Query 012808
Match_columns 456
No_of_seqs 293 out of 2150
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0456 Aspartate kinase [Amin 100.0 1.1E-93 2.4E-98 707.3 32.2 449 2-454 1-452 (559)
2 PLN02551 aspartokinase 100.0 7.3E-88 1.6E-92 716.4 40.6 411 41-451 12-422 (521)
3 COG0527 LysC Aspartokinases [A 100.0 5.5E-78 1.2E-82 629.2 38.6 351 82-447 3-361 (447)
4 PRK09084 aspartate kinase III; 100.0 1.4E-75 3E-80 615.5 42.3 353 82-446 1-357 (448)
5 PRK09034 aspartate kinase; Rev 100.0 1.6E-75 3.5E-80 616.2 40.9 352 82-447 1-360 (454)
6 PRK06291 aspartate kinase; Pro 100.0 3E-73 6.6E-78 600.9 40.8 364 81-447 1-375 (465)
7 PRK09181 aspartate kinase; Val 100.0 1.2E-70 2.6E-75 579.4 37.9 346 81-443 3-377 (475)
8 PRK09466 metL bifunctional asp 100.0 4.6E-70 1E-74 605.2 38.1 352 80-446 10-370 (810)
9 PRK05925 aspartate kinase; Pro 100.0 2.8E-69 6.1E-74 564.5 40.4 346 81-446 2-349 (440)
10 PRK09436 thrA bifunctional asp 100.0 1.4E-68 3E-73 596.8 40.1 356 82-447 1-369 (819)
11 PRK08961 bifunctional aspartat 100.0 1.4E-66 3.1E-71 585.3 40.0 358 80-445 7-372 (861)
12 cd04258 AAK_AKiii-LysC-EC AAK_ 100.0 1.7E-66 3.7E-71 517.0 32.6 288 82-376 1-292 (292)
13 TIGR00657 asp_kinases aspartat 100.0 6.8E-66 1.5E-70 542.1 38.0 349 81-447 1-355 (441)
14 cd04245 AAK_AKiii-YclM-BS AAK_ 100.0 2.1E-66 4.6E-71 515.4 32.0 281 82-376 1-288 (288)
15 cd04244 AAK_AK-LysC-like AAK_A 100.0 1E-65 2.2E-70 514.2 32.0 290 83-376 2-298 (298)
16 cd04257 AAK_AK-HSDH AAK_AK-HSD 100.0 4E-65 8.6E-70 508.5 32.4 286 82-376 1-294 (294)
17 cd04243 AAK_AK-HSDH-like AAK_A 100.0 7.4E-65 1.6E-69 506.4 31.9 285 82-376 1-293 (293)
18 cd04259 AAK_AK-DapDC AAK_AK-Da 100.0 1E-64 2.3E-69 505.5 32.0 284 82-376 1-295 (295)
19 cd04247 AAK_AK-Hom3 AAK_AK-Hom 100.0 2.4E-64 5.2E-69 504.0 31.1 288 82-377 2-305 (306)
20 TIGR00656 asp_kin_monofn aspar 100.0 1.6E-60 3.5E-65 495.6 35.9 309 81-447 1-314 (401)
21 PRK08841 aspartate kinase; Val 100.0 8.2E-61 1.8E-65 495.1 32.9 300 81-447 2-303 (392)
22 PRK08373 aspartate kinase; Val 100.0 1.8E-60 4E-65 482.0 33.1 323 81-445 4-328 (341)
23 cd04248 AAK_AK-Ectoine AAK_AK- 100.0 7.6E-58 1.6E-62 452.4 29.7 279 83-376 2-304 (304)
24 TIGR02078 AspKin_pair Pyrococc 100.0 1.5E-57 3.2E-62 458.5 30.0 288 82-401 1-291 (327)
25 PRK08210 aspartate kinase I; R 100.0 2.2E-56 4.7E-61 465.1 34.4 311 81-451 2-326 (403)
26 PRK06635 aspartate kinase; Rev 100.0 2.7E-56 5.8E-61 464.4 34.4 306 81-446 2-316 (404)
27 PRK07431 aspartate kinase; Pro 100.0 3.9E-55 8.4E-60 475.4 34.8 308 81-447 2-325 (587)
28 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 1.9E-47 4.2E-52 371.6 26.0 237 82-376 1-239 (239)
29 cd04234 AAK_AK AAK_AK: Amino A 100.0 1.4E-47 3.1E-52 369.8 24.0 225 82-376 1-227 (227)
30 cd04246 AAK_AK-DapG-like AAK_A 100.0 4.9E-47 1.1E-51 368.6 26.3 237 82-376 1-239 (239)
31 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 1.8E-46 3.9E-51 366.0 25.9 237 82-376 1-244 (244)
32 cd02115 AAK Amino Acid Kinases 100.0 7.6E-37 1.6E-41 297.1 24.7 237 84-375 1-248 (248)
33 PRK12314 gamma-glutamyl kinase 100.0 1.3E-31 2.8E-36 264.5 21.3 226 80-377 9-264 (266)
34 PF00696 AA_kinase: Amino acid 100.0 5.1E-33 1.1E-37 269.3 9.4 233 81-364 1-242 (242)
35 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 5.5E-31 1.2E-35 258.0 19.9 221 83-375 2-250 (251)
36 PRK14557 pyrH uridylate kinase 100.0 1.1E-29 2.3E-34 248.0 21.6 216 81-378 5-239 (247)
37 cd04239 AAK_UMPK-like AAK_UMPK 100.0 6.4E-30 1.4E-34 247.1 19.3 204 83-369 2-213 (229)
38 PRK00358 pyrH uridylate kinase 100.0 9.1E-30 2E-34 246.2 20.3 212 81-375 1-230 (231)
39 PRK14558 pyrH uridylate kinase 100.0 2.1E-29 4.5E-34 243.9 21.5 161 190-377 61-230 (231)
40 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0 1.1E-29 2.3E-34 246.0 17.4 213 81-376 1-231 (231)
41 TIGR02075 pyrH_bact uridylate 100.0 2.2E-28 4.8E-33 237.1 20.7 213 81-376 2-233 (233)
42 cd04253 AAK_UMPK-PyrH-Pf AAK_U 100.0 1.7E-27 3.7E-32 229.1 19.7 201 83-375 2-220 (221)
43 PRK13402 gamma-glutamyl kinase 100.0 3.9E-27 8.5E-32 241.6 20.0 225 80-378 5-258 (368)
44 TIGR02076 pyrH_arch uridylate 99.9 9.2E-27 2E-31 223.9 19.4 202 83-375 1-220 (221)
45 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.9 1.5E-26 3.2E-31 226.7 17.7 224 83-369 1-237 (252)
46 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.9 4E-26 8.6E-31 227.0 18.1 230 81-369 15-263 (279)
47 PRK05429 gamma-glutamyl kinase 99.9 1.3E-25 2.9E-30 231.4 20.5 227 80-378 8-262 (372)
48 PRK00942 acetylglutamate kinas 99.9 9.9E-26 2.2E-30 224.5 17.8 236 81-377 24-282 (283)
49 TIGR00761 argB acetylglutamate 99.9 7.6E-26 1.7E-30 218.8 16.5 216 82-360 1-228 (231)
50 TIGR01027 proB glutamate 5-kin 99.9 8.4E-25 1.8E-29 224.8 19.2 225 82-378 2-254 (363)
51 PRK14556 pyrH uridylate kinase 99.9 1.8E-24 3.8E-29 210.2 20.1 215 80-376 15-247 (249)
52 PLN02418 delta-1-pyrroline-5-c 99.9 6.3E-25 1.4E-29 243.0 19.4 237 80-379 15-285 (718)
53 cd04238 AAK_NAGK-like AAK_NAGK 99.9 6.2E-25 1.3E-29 215.7 16.1 223 83-369 1-240 (256)
54 PRK14058 acetylglutamate/acety 99.9 2.7E-24 5.9E-29 212.7 19.7 174 189-377 66-267 (268)
55 COG0528 PyrH Uridylate kinase 99.9 1.4E-23 3E-28 199.4 19.8 214 81-376 6-237 (238)
56 cd04241 AAK_FomA-like AAK_FomA 99.9 1.1E-22 2.3E-27 199.2 21.3 148 203-368 80-236 (252)
57 PLN02512 acetylglutamate kinas 99.9 1.2E-21 2.5E-26 197.6 22.8 236 81-376 48-308 (309)
58 CHL00202 argB acetylglutamate 99.9 5.7E-22 1.2E-26 197.7 17.7 235 81-376 24-283 (284)
59 COG0548 ArgB Acetylglutamate k 99.9 2.2E-21 4.7E-26 189.3 18.1 228 81-369 3-247 (265)
60 cd04255 AAK_UMPK-MosAB AAK_UMP 99.9 1.2E-20 2.6E-25 185.9 22.0 212 81-375 31-261 (262)
61 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.9 2.2E-20 4.9E-25 183.7 20.6 221 83-369 1-244 (257)
62 cd04256 AAK_P5CS_ProBA AAK_P5C 99.8 4.4E-20 9.6E-25 183.9 19.4 170 193-375 93-283 (284)
63 TIGR01092 P5CS delta l-pyrroli 99.8 4E-20 8.6E-25 205.1 18.6 236 80-381 7-279 (715)
64 PTZ00489 glutamate 5-kinase; P 99.8 1.1E-18 2.5E-23 171.9 21.4 169 194-378 72-260 (264)
65 COG0263 ProB Glutamate 5-kinas 99.8 1.2E-18 2.7E-23 173.9 21.0 229 80-379 6-261 (369)
66 TIGR01890 N-Ac-Glu-synth amino 99.7 1.4E-16 3.1E-21 167.6 21.2 234 81-378 18-280 (429)
67 cd04252 AAK_NAGK-fArgBP AAK_NA 99.7 8.1E-16 1.8E-20 150.7 19.1 212 84-364 2-230 (248)
68 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.7 7.7E-16 1.7E-20 153.4 18.6 224 81-369 19-264 (280)
69 PRK05279 N-acetylglutamate syn 99.7 3.5E-16 7.6E-21 165.2 16.4 233 81-378 26-292 (441)
70 cd04236 AAK_NAGS-Urea AAK_NAGS 99.7 1.2E-15 2.7E-20 150.7 18.5 207 78-364 33-253 (271)
71 PRK12353 putative amino acid k 99.7 7.2E-16 1.6E-20 155.8 16.0 119 255-376 179-313 (314)
72 cd04240 AAK_UC AAK_UC: Unchara 99.7 2.4E-15 5.3E-20 143.1 16.1 135 190-369 50-187 (203)
73 PLN02825 amino-acid N-acetyltr 99.6 1.4E-14 3E-19 154.5 20.1 196 81-340 18-236 (515)
74 PRK12352 putative carbamate ki 99.6 8.3E-15 1.8E-19 147.7 16.4 88 287-377 216-315 (316)
75 TIGR00746 arcC carbamate kinas 99.6 4.1E-14 9E-19 142.4 19.2 118 256-376 177-309 (310)
76 cd04235 AAK_CK AAK_CK: Carbama 99.6 1E-13 2.2E-18 139.0 17.7 118 256-375 176-307 (308)
77 COG1608 Predicted archaeal kin 99.5 8.7E-13 1.9E-17 126.0 18.3 156 203-376 81-251 (252)
78 PRK12686 carbamate kinase; Rev 99.5 2.1E-12 4.5E-17 129.8 18.8 120 255-376 177-311 (312)
79 PRK04531 acetylglutamate kinas 99.4 2.5E-12 5.4E-17 133.8 14.8 109 258-378 126-250 (398)
80 PRK12354 carbamate kinase; Rev 99.4 4.5E-12 9.7E-17 126.9 15.6 121 255-378 169-301 (307)
81 PRK12454 carbamate kinase-like 99.4 3.6E-11 7.7E-16 120.8 19.9 119 256-376 180-312 (313)
82 KOG1154 Gamma-glutamyl kinase 99.3 1.5E-11 3.4E-16 116.6 13.0 159 197-374 92-263 (285)
83 PRK09411 carbamate kinase; Rev 99.2 1.2E-09 2.6E-14 108.9 18.8 115 256-376 171-296 (297)
84 COG2054 Uncharacterized archae 98.9 5.9E-08 1.3E-12 89.3 15.3 88 276-377 113-210 (212)
85 cd04933 ACT_AK1-AT_1 ACT domai 98.8 1E-08 2.2E-13 83.0 7.2 58 395-452 1-58 (78)
86 cd04932 ACT_AKiii-LysC-EC_1 AC 98.7 3.6E-08 7.7E-13 79.2 7.9 53 395-447 1-53 (75)
87 cd04937 ACT_AKi-DapG-BS_2 ACT 98.7 3.2E-08 6.9E-13 76.7 5.8 53 395-447 1-53 (64)
88 PF13840 ACT_7: ACT domain ; P 98.6 9.1E-08 2E-12 74.6 6.3 56 391-447 2-58 (65)
89 cd04935 ACT_AKiii-DAPDC_1 ACT 98.6 1.6E-07 3.4E-12 75.5 7.5 50 395-444 1-50 (75)
90 cd04934 ACT_AK-Hom3_1 CT domai 98.6 1.7E-07 3.8E-12 74.8 7.2 52 395-446 1-52 (73)
91 cd04912 ACT_AKiii-LysC-EC-like 98.6 1.7E-07 3.7E-12 75.0 7.0 51 395-445 1-51 (75)
92 cd04890 ACT_AK-like_1 ACT doma 98.5 1.8E-07 4E-12 71.6 6.4 50 397-446 2-51 (62)
93 COG0549 ArcC Carbamate kinase 98.5 8.9E-06 1.9E-10 80.1 18.1 115 253-376 176-311 (312)
94 cd04919 ACT_AK-Hom3_2 ACT doma 98.5 2.8E-07 6.1E-12 71.1 5.9 52 395-446 1-54 (66)
95 cd04922 ACT_AKi-HSDH-ThrA_2 AC 98.4 5E-07 1.1E-11 69.5 5.9 52 395-446 1-54 (66)
96 cd04918 ACT_AK1-AT_2 ACT domai 98.3 9.3E-07 2E-11 68.7 5.5 51 396-447 2-54 (65)
97 cd04924 ACT_AK-Arch_2 ACT doma 98.3 1.1E-06 2.3E-11 67.6 5.7 53 395-447 1-55 (66)
98 cd04915 ACT_AK-Ectoine_2 ACT d 98.3 9.9E-07 2.2E-11 68.9 5.5 52 395-447 2-55 (66)
99 cd04936 ACT_AKii-LysC-BS-like_ 98.3 1.1E-06 2.5E-11 66.5 5.5 52 396-447 1-52 (63)
100 cd04923 ACT_AK-LysC-DapG-like_ 98.3 1.2E-06 2.7E-11 66.4 5.5 52 396-447 1-52 (63)
101 COG0527 LysC Aspartokinases [A 98.3 1.3E-06 2.8E-11 92.5 7.2 103 344-447 322-435 (447)
102 cd04916 ACT_AKiii-YclM-BS_2 AC 98.3 1.6E-06 3.5E-11 66.6 5.9 53 395-447 1-55 (66)
103 cd04920 ACT_AKiii-DAPDC_2 ACT 98.2 1.4E-06 3.1E-11 67.3 4.3 52 396-447 1-52 (63)
104 TIGR00657 asp_kinases aspartat 98.2 5.4E-06 1.2E-10 87.9 9.5 104 344-447 316-430 (441)
105 PRK06635 aspartate kinase; Rev 98.1 7.7E-06 1.7E-10 85.6 8.5 104 344-447 275-392 (404)
106 PRK06291 aspartate kinase; Pro 98.1 1.1E-05 2.3E-10 86.3 9.6 103 344-446 336-451 (465)
107 TIGR00656 asp_kin_monofn aspar 98.1 1.1E-05 2.5E-10 84.3 9.5 104 344-447 275-389 (401)
108 PLN02551 aspartokinase 98.0 1.6E-05 3.5E-10 85.8 9.6 101 344-447 381-498 (521)
109 PRK07431 aspartate kinase; Pro 98.0 1.7E-05 3.8E-10 87.0 9.9 103 345-447 453-571 (587)
110 cd04868 ACT_AK-like ACT domain 98.0 7.9E-06 1.7E-10 60.3 4.5 50 396-445 1-52 (60)
111 cd04921 ACT_AKi-HSDH-ThrA-like 98.0 1.2E-05 2.7E-10 64.4 5.9 53 395-447 1-55 (80)
112 PRK09034 aspartate kinase; Rev 98.0 1.2E-05 2.6E-10 85.7 7.1 62 386-447 376-439 (454)
113 cd04892 ACT_AK-like_2 ACT doma 98.0 1.4E-05 3E-10 60.2 5.3 52 396-447 1-54 (65)
114 cd04911 ACT_AKiii-YclM-BS_1 AC 97.9 1.4E-05 3E-10 64.2 4.9 52 396-447 2-53 (76)
115 PRK09436 thrA bifunctional asp 97.9 3.8E-05 8.3E-10 87.3 9.7 102 345-446 331-449 (819)
116 cd04914 ACT_AKi-DapG-BS_1 ACT 97.9 4.3E-05 9.3E-10 59.9 6.4 56 396-453 2-58 (67)
117 cd04917 ACT_AKiii-LysC-EC_2 AC 97.8 3.3E-05 7.2E-10 59.5 5.3 51 395-447 1-53 (64)
118 PRK05925 aspartate kinase; Pro 97.8 0.00013 2.9E-09 77.4 10.2 97 347-446 316-422 (440)
119 PRK08210 aspartate kinase I; R 97.8 5.1E-05 1.1E-09 79.6 7.0 102 344-447 284-391 (403)
120 PRK09181 aspartate kinase; Val 97.7 6.5E-05 1.4E-09 80.4 6.1 100 344-447 344-455 (475)
121 PRK09466 metL bifunctional asp 97.6 0.0002 4.4E-09 81.3 8.9 102 345-447 333-443 (810)
122 PRK08841 aspartate kinase; Val 97.6 0.00011 2.5E-09 76.8 6.4 94 347-446 269-366 (392)
123 PRK08961 bifunctional aspartat 97.5 0.00032 7E-09 80.4 8.8 102 343-446 336-449 (861)
124 cd04891 ACT_AK-LysC-DapG-like_ 97.5 0.00016 3.5E-09 53.7 4.3 48 397-446 2-54 (61)
125 PRK09084 aspartate kinase III; 97.4 0.00027 5.9E-09 75.3 6.2 100 344-446 321-435 (448)
126 cd04913 ACT_AKii-LysC-BS-like_ 97.3 0.00041 8.9E-09 53.9 4.8 51 395-447 1-56 (75)
127 cd04910 ACT_AK-Ectoine_1 ACT d 97.0 0.0021 4.6E-08 51.1 6.7 49 396-444 2-50 (71)
128 KOG0456 Aspartate kinase [Amin 97.0 0.00025 5.5E-09 72.5 1.2 102 343-445 407-523 (559)
129 KOG2436 Acetylglutamate kinase 96.2 0.03 6.6E-07 59.4 10.1 121 200-338 171-302 (520)
130 PF01842 ACT: ACT domain; Int 93.5 0.15 3.2E-06 38.4 4.7 26 405-430 7-32 (66)
131 cd04888 ACT_PheB-BS C-terminal 93.4 0.3 6.5E-06 38.1 6.5 42 405-446 7-53 (76)
132 COG3830 ACT domain-containing 91.2 0.23 5E-06 41.1 3.4 47 394-443 2-52 (90)
133 cd04908 ACT_Bt0572_1 N-termina 90.5 0.9 2E-05 34.8 6.0 50 405-454 8-60 (66)
134 PRK04435 hypothetical protein; 90.0 1 2.2E-05 40.8 6.8 57 393-452 67-130 (147)
135 PRK06737 acetolactate synthase 89.7 0.93 2E-05 36.5 5.6 48 406-453 10-63 (76)
136 PRK13562 acetolactate synthase 88.6 1.2 2.7E-05 36.5 5.6 37 405-441 9-51 (84)
137 PRK08178 acetolactate synthase 86.2 2.2 4.7E-05 36.0 5.8 38 405-442 15-58 (96)
138 cd04870 ACT_PSP_1 CT domains f 86.1 2.9 6.2E-05 32.9 6.4 43 397-442 1-47 (75)
139 cd02116 ACT ACT domains are co 85.2 2.4 5.1E-05 29.1 5.1 38 407-444 7-50 (60)
140 PRK11152 ilvM acetolactate syn 84.9 3 6.4E-05 33.6 5.9 37 405-441 10-52 (76)
141 PF13710 ACT_5: ACT domain; PD 83.8 2 4.3E-05 33.1 4.3 47 407-453 1-53 (63)
142 TIGR00119 acolac_sm acetolacta 82.9 2.7 5.8E-05 38.6 5.5 39 405-443 8-52 (157)
143 TIGR00719 sda_beta L-serine de 82.7 22 0.00049 33.9 12.1 46 406-452 156-206 (208)
144 cd04882 ACT_Bt0572_2 C-termina 82.2 2.6 5.6E-05 31.4 4.5 26 405-430 6-31 (65)
145 PRK11895 ilvH acetolactate syn 82.1 3 6.4E-05 38.5 5.5 40 405-444 9-54 (161)
146 PRK13581 D-3-phosphoglycerate 80.7 11 0.00024 41.2 10.3 107 347-453 385-511 (526)
147 PF13740 ACT_6: ACT domain; PD 80.1 5.8 0.00012 31.4 5.9 45 396-443 3-51 (76)
148 PRK00194 hypothetical protein; 78.1 3.3 7.2E-05 33.6 4.1 32 396-430 4-35 (90)
149 cd04889 ACT_PDH-BS-like C-term 78.0 3.4 7.3E-05 30.3 3.8 26 405-430 5-30 (56)
150 cd04875 ACT_F4HF-DF N-terminal 78.0 8.4 0.00018 30.0 6.3 32 397-431 1-32 (74)
151 cd04883 ACT_AcuB C-terminal AC 77.2 9.9 0.00021 29.0 6.4 40 405-444 8-53 (72)
152 TIGR01327 PGDH D-3-phosphoglyc 77.1 12 0.00025 41.0 9.1 105 347-452 384-509 (525)
153 cd04872 ACT_1ZPV ACT domain pr 76.1 12 0.00027 30.2 7.0 32 396-430 2-33 (88)
154 COG4747 ACT domain-containing 76.0 13 0.00029 32.6 7.2 96 348-447 19-121 (142)
155 CHL00100 ilvH acetohydroxyacid 75.8 7 0.00015 36.5 6.0 43 398-443 5-53 (174)
156 cd04893 ACT_GcvR_1 ACT domains 75.8 11 0.00024 29.8 6.5 32 396-430 2-33 (77)
157 COG4747 ACT domain-containing 75.5 11 0.00023 33.1 6.5 48 397-447 5-56 (142)
158 PRK08577 hypothetical protein; 74.5 9 0.00019 33.9 6.2 35 393-430 54-88 (136)
159 cd04880 ACT_AAAH-PDT-like ACT 74.3 7.3 0.00016 30.4 5.0 26 406-431 7-32 (75)
160 cd04869 ACT_GcvR_2 ACT domains 71.5 21 0.00047 27.9 7.2 30 398-430 2-31 (81)
161 PF13291 ACT_4: ACT domain; PD 70.8 11 0.00023 29.8 5.2 49 396-447 7-61 (80)
162 COG3603 Uncharacterized conser 67.4 18 0.00039 31.7 6.1 67 385-452 53-120 (128)
163 cd04884 ACT_CBS C-terminal ACT 67.3 9.7 0.00021 29.4 4.2 26 405-430 6-31 (72)
164 cd04878 ACT_AHAS N-terminal AC 67.2 24 0.00052 26.1 6.4 38 405-442 7-50 (72)
165 cd04903 ACT_LSD C-terminal ACT 66.7 20 0.00044 26.5 5.9 25 406-430 7-31 (71)
166 cd04879 ACT_3PGDH-like ACT_3PG 66.4 18 0.00039 26.7 5.5 26 405-430 6-31 (71)
167 cd04902 ACT_3PGDH-xct C-termin 66.4 14 0.00031 28.0 5.0 26 405-430 6-31 (73)
168 cd04887 ACT_MalLac-Enz ACT_Mal 66.0 18 0.0004 27.7 5.6 43 405-447 6-53 (74)
169 cd04905 ACT_CM-PDT C-terminal 65.9 14 0.0003 29.3 4.9 39 405-443 8-51 (80)
170 cd04881 ACT_HSDH-Hom ACT_HSDH_ 64.9 25 0.00055 26.5 6.2 40 405-444 7-52 (79)
171 cd04909 ACT_PDH-BS C-terminal 63.3 13 0.00028 28.3 4.2 37 405-441 8-50 (69)
172 cd04886 ACT_ThrD-II-like C-ter 63.2 16 0.00036 27.1 4.8 26 405-430 5-30 (73)
173 cd04873 ACT_UUR-ACR-like ACT d 58.9 32 0.00069 25.6 5.7 30 398-430 3-32 (70)
174 cd04871 ACT_PSP_2 ACT domains 58.0 9.2 0.0002 31.1 2.6 32 397-430 1-32 (84)
175 cd04874 ACT_Af1403 N-terminal 57.7 45 0.00097 24.7 6.4 26 405-430 7-32 (72)
176 cd04895 ACT_ACR_1 ACT domain-c 57.6 19 0.0004 28.7 4.2 31 396-429 2-32 (72)
177 cd04899 ACT_ACR-UUR-like_2 C-t 57.2 18 0.00039 27.3 4.1 31 397-430 2-32 (70)
178 cd04926 ACT_ACR_4 C-terminal 56.7 21 0.00046 27.8 4.4 38 405-442 8-49 (72)
179 COG0440 IlvH Acetolactate synt 56.4 17 0.00036 33.6 4.2 48 406-453 12-65 (163)
180 PRK05788 cobalamin biosynthesi 55.7 2.4E+02 0.0053 28.8 13.3 123 284-428 99-227 (315)
181 PRK13011 formyltetrahydrofolat 55.5 42 0.00091 33.8 7.4 34 396-432 8-41 (286)
182 cd04925 ACT_ACR_2 ACT domain-c 54.6 19 0.00042 28.2 3.9 43 397-442 2-48 (74)
183 cd04877 ACT_TyrR N-terminal AC 54.4 43 0.00092 26.0 5.9 42 406-447 8-50 (74)
184 COG1058 CinA Predicted nucleot 54.1 61 0.0013 32.2 8.1 68 205-301 22-89 (255)
185 PRK11589 gcvR glycine cleavage 52.7 34 0.00075 32.3 5.9 48 393-443 6-57 (190)
186 cd04900 ACT_UUR-like_1 ACT dom 49.8 30 0.00065 26.9 4.3 30 397-429 3-32 (73)
187 PRK03670 competence damage-ind 49.0 83 0.0018 31.1 8.2 70 204-301 20-89 (252)
188 PRK13010 purU formyltetrahydro 46.4 25 0.00054 35.5 4.1 33 396-431 10-42 (289)
189 cd04819 PA_2 PA_2: Protease-as 43.6 1.7E+02 0.0038 25.3 8.6 63 276-338 44-114 (127)
190 cd04927 ACT_ACR-like_2 Second 43.5 32 0.00069 27.2 3.6 30 397-429 2-31 (76)
191 cd04904 ACT_AAAH ACT domain of 42.9 33 0.00071 26.9 3.5 36 406-441 8-48 (74)
192 cd00885 cinA Competence-damage 42.6 1.6E+02 0.0035 27.1 8.6 69 204-301 19-87 (170)
193 PF00994 MoCF_biosynth: Probab 42.6 1.1E+02 0.0024 26.9 7.3 69 203-300 16-84 (144)
194 COG2150 Predicted regulator of 42.1 53 0.0012 30.3 5.1 25 406-430 103-127 (167)
195 cd04896 ACT_ACR-like_3 ACT dom 40.9 38 0.00083 27.1 3.6 30 397-429 2-31 (75)
196 COG0077 PheA Prephenate dehydr 40.9 2.2E+02 0.0049 28.6 9.8 113 322-443 122-244 (279)
197 PF13511 DUF4124: Domain of un 40.2 25 0.00054 26.3 2.4 29 291-319 3-33 (60)
198 TIGR00177 molyb_syn molybdenum 39.6 1.3E+02 0.0027 26.8 7.2 66 204-298 27-92 (144)
199 PRK03673 hypothetical protein; 39.2 1.6E+02 0.0034 31.2 8.9 69 204-301 21-89 (396)
200 cd04929 ACT_TPH ACT domain of 38.9 44 0.00096 26.5 3.7 25 406-430 8-32 (74)
201 COG3602 Uncharacterized protei 38.5 22 0.00047 31.0 1.9 44 388-431 63-106 (134)
202 PRK08198 threonine dehydratase 38.3 76 0.0016 33.2 6.5 57 388-447 320-385 (404)
203 cd04876 ACT_RelA-SpoT ACT dom 36.8 76 0.0016 22.4 4.6 25 406-430 6-30 (71)
204 cd04931 ACT_PAH ACT domain of 36.2 49 0.0011 27.4 3.7 36 406-441 22-62 (90)
205 PRK06027 purU formyltetrahydro 36.0 51 0.0011 33.1 4.5 34 395-431 6-39 (286)
206 PRK11589 gcvR glycine cleavage 35.8 45 0.00096 31.6 3.8 32 396-430 96-127 (190)
207 cd04897 ACT_ACR_3 ACT domain-c 35.6 69 0.0015 25.7 4.3 31 396-429 2-32 (75)
208 COG0462 PrsA Phosphoribosylpyr 33.8 4.7E+02 0.01 26.9 10.9 27 195-221 99-125 (314)
209 cd04901 ACT_3PGDH C-terminal A 33.6 44 0.00096 25.0 2.9 26 405-430 6-31 (69)
210 COG4492 PheB ACT domain-contai 33.2 1.6E+02 0.0035 26.4 6.5 41 405-445 79-124 (150)
211 PRK01215 competence damage-ind 33.1 2E+02 0.0043 28.6 8.1 70 203-301 22-91 (264)
212 cd04930 ACT_TH ACT domain of t 31.8 56 0.0012 28.3 3.5 25 406-430 49-73 (115)
213 PF11823 DUF3343: Protein of u 30.4 83 0.0018 24.6 4.0 47 410-456 12-64 (73)
214 PRK00549 competence damage-ind 28.0 2.9E+02 0.0063 29.3 8.8 70 203-301 19-88 (414)
215 COG3367 Uncharacterized conser 27.3 6.2E+02 0.013 26.2 10.4 115 299-438 67-192 (339)
216 PRK06382 threonine dehydratase 27.3 1.6E+02 0.0034 31.0 6.6 62 388-452 323-394 (406)
217 TIGR02667 moaB_proteo molybden 26.9 1.9E+02 0.0041 26.4 6.3 69 203-299 21-90 (163)
218 TIGR02726 phenyl_P_delta pheny 26.6 39 0.00085 31.2 1.7 49 304-366 9-59 (169)
219 smart00852 MoCF_biosynth Proba 26.5 2.3E+02 0.005 24.5 6.6 69 203-300 17-85 (135)
220 cd05014 SIS_Kpsf KpsF-like pro 26.4 2.3E+02 0.005 23.8 6.5 79 277-364 1-81 (128)
221 PRK11790 D-3-phosphoglycerate 25.1 1.2E+02 0.0025 32.2 5.1 48 406-453 346-395 (409)
222 COG0303 MoeA Molybdopterin bio 24.8 2.3E+02 0.0049 30.1 7.2 71 205-306 204-274 (404)
223 COG1778 Low specificity phosph 24.6 48 0.001 30.7 1.8 52 304-367 10-61 (170)
224 cd04928 ACT_TyrKc Uncharacteri 24.4 1E+02 0.0022 24.3 3.4 25 405-429 8-32 (68)
225 cd00758 MoCF_BD MoCF_BD: molyb 24.1 3.5E+02 0.0075 23.5 7.3 66 204-298 19-84 (133)
226 cd04885 ACT_ThrD-I Tandem C-te 23.9 1.7E+02 0.0038 22.1 4.7 42 405-447 5-51 (68)
227 TIGR01127 ilvA_1Cterm threonin 23.8 1.7E+02 0.0037 30.2 6.1 54 388-444 298-360 (380)
228 TIGR00200 cinA_nterm competenc 23.5 4.2E+02 0.0092 28.1 9.0 68 205-301 21-88 (413)
229 cd04906 ACT_ThrD-I_1 First of 23.4 2.5E+02 0.0055 22.4 5.8 40 405-444 8-50 (85)
230 PRK11898 prephenate dehydratas 23.3 4.9E+02 0.011 26.0 9.0 115 320-441 121-245 (283)
231 cd00886 MogA_MoaB MogA_MoaB fa 22.1 3.2E+02 0.007 24.4 6.8 67 204-299 20-88 (152)
232 PF11713 Peptidase_C80: Peptid 22.1 1.1E+02 0.0023 28.1 3.6 40 397-436 105-148 (157)
233 PRK05686 fliG flagellar motor 21.8 6.6E+02 0.014 25.7 9.8 70 147-217 233-302 (339)
No 1
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-93 Score=707.32 Aligned_cols=449 Identities=71% Similarity=1.022 Sum_probs=421.8
Q ss_pred Cccccccccccccccc---ccccccccccccccccccccceecccCCCcccceeEEeecCcceeeeccccccccccccCC
Q 012808 2 ANTMQFSSIIQKNSLH---CQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESE 78 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (456)
++++|++|+.+++..- -.+..+++.+|+.-.+++.+.++ .++||++ ++|++|+..++...+++.+++....+ +
T Consensus 1 ~a~~~~~~~~~~~l~l~~~r~~~~~~~~~f~~~~~~~~~~~~--~~s~~~i-~~~~~~~~~r~~l~~~k~~e~~~s~g-~ 76 (559)
T KOG0456|consen 1 MASTQVYGVKTPRLALTSKRLEFSSKGVDFSTLKKSSLPIGR--GSSCRNI-SLRVSCEAVRVVLLERKNPETDPSNG-E 76 (559)
T ss_pred CCceeEEeecCCCcccccccccccccCccchhhccccccccC--Cccceec-eeeeeeeeeeEeeecccCcccCccCC-C
Confidence 4689999997665442 25566778888887777764445 5667777 89999999999999999888855555 7
Q ss_pred CcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 79 KQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 79 ~~~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
+..|+|+|||||||++++++..++..+..+++++++||+|||+++|+.|+.+++++..|+..+.+..++++.|++.|++.
T Consensus 77 k~~~~V~KFGGsSV~s~~~~i~v~~l~~~~~~e~~~vV~SA~sk~Tna~~ta~~~~~~c~va~~~sie~l~iIke~Hi~t 156 (559)
T KOG0456|consen 77 KGLTCVMKFGGSSVGSAERMIEVAVLILYFPDERPVVVLSAMSKTTNALLTAGEKAVCCGVANVESIEELSIIKELHIRT 156 (559)
T ss_pred cceEEEEecCCccccccchhhhhhHHHHhcCCCCeEEEEEccccchhhhhhhhhheecccccCcchHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
+++|+.+...+.++++.|+++|+|+++++|.+++++|++++|||++|+++|+++|+..|+++.++|+.++++++.+++.+
T Consensus 157 a~e~~~d~~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~ 236 (559)
T KOG0456|consen 157 AHELIVDPAVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTN 236 (559)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (456)
Q Consensus 239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~ 318 (456)
.++.+.+++.+.+.+...|..++.|||++||.|..++.|.++++||||||++|+.||.+||++++++|+|||||+|+||+
T Consensus 237 ~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~ 316 (559)
T KOG0456|consen 237 DDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPR 316 (559)
T ss_pred hhHHHHHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCc
Confidence 99988899888887777788889999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeEEE
Q 012808 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTML 398 (456)
Q Consensus 319 ~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nvalI 398 (456)
++|.|+++|.++++||.||+|||++|+||-+++|+++.+|||||+|.+||.+|||.|++++++++...++|+.++|+.+|
T Consensus 317 ~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~~~GTvI~~d~~m~k~~~TsI~lK~nv~ml 396 (559)
T KOG0456|consen 317 IYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPTAPGTVITPDRDMSKAGLTSIVLKRNVTML 396 (559)
T ss_pred cCCCccccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCCCCceEeccchhhhhccceEEEEeccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCcHHHHhhh
Q 012808 399 DIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQA 454 (456)
Q Consensus 399 sv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~~~l~~~~ 454 (456)
.|.+.+|.+..||++++|.+|+++||+||+|+|||++||++++.+++++|||||++
T Consensus 397 dI~Str~l~q~GFLAkvFti~ek~~isVDvvaTSEV~iSltL~~~~~~sreliq~~ 452 (559)
T KOG0456|consen 397 DIASTRMLGQHGFLAKVFTIFEKLGISVDVVATSEVSISLTLDPSKLDSRELIQGE 452 (559)
T ss_pred EecccchhhhhhHHHHHHHHHHHhCcEEEEEEeeeEEEEEecChhhhhhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999863
No 2
>PLN02551 aspartokinase
Probab=100.00 E-value=7.3e-88 Score=716.39 Aligned_cols=411 Identities=82% Similarity=1.210 Sum_probs=369.3
Q ss_pred cccCCCcccceeEEeecCcceeeeccccccccccccCCCcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012808 41 SVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAM 120 (456)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~ 120 (456)
+...++.+++.+++.|..+......+..++........+++++|+|||||||+|+++|++|+++|.+..+.++|||||||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~~vVVvSA~ 91 (521)
T PLN02551 12 RSVGSSCRNIVLRVNCSAGRVEALVEAPSETRQGGGTEKQLTVVMKFGGSSVASAERMREVADLILSFPDERPVVVLSAM 91 (521)
T ss_pred ccccccchhHHHHhhhhhhhhHhhhhcccccccccccccCceEEEEECCCccCCHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 33344444457888887777655555555665566667779999999999999999999999999987666789999999
Q ss_pred CcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhh
Q 012808 121 GKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200 (456)
Q Consensus 121 g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~ 200 (456)
+|+||.|+++++.+..++..+.++.+.++.++++|..++++|+.+...+..++++|+++++++.++++++++.+|+|+|+
T Consensus 92 ~~~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~ 171 (521)
T PLN02551 92 GKTTNNLLLAGEKAVSCGVTNVSEIEELSAIRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSF 171 (521)
T ss_pred CCchHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHhH
Confidence 99999999998888765544455677899999999999999998888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCcee
Q 012808 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAIT 280 (456)
Q Consensus 201 GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vt 280 (456)
||++|+.||+++|++.|+++.++|++++|++|++.|+++++.+.+++++.+.+...|...+.|||++||+|.++++|++|
T Consensus 172 GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~t 251 (521)
T PLN02551 172 GERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAIT 251 (521)
T ss_pred HHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEE
Confidence 99999999999999999999999999999999999999998877888887777655555678999999999982389999
Q ss_pred eccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCE
Q 012808 281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 360 (456)
Q Consensus 281 tlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv 360 (456)
|||||||||||+++|.+|+|++++||||||||||+|||++|+|++|++|||+||.||++|||+||||+|++||++++|||
T Consensus 252 tLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi 331 (521)
T PLN02551 252 TLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 331 (521)
T ss_pred ecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCceEEeeccCCccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEE
Q 012808 361 RVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTL 440 (456)
Q Consensus 361 ~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V 440 (456)
+|+|+|+|+.+||+|+...++.+..|++|+.++|+++|+|.+.+|.+.+||++++|+.|+++||+|+||++|+.+|+|++
T Consensus 332 ~vknt~~p~~~GT~I~~~~~~~~~~v~~It~~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssSe~sIs~~v 411 (521)
T PLN02551 332 RVKNSYNPTAPGTLITKTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSISLTL 411 (521)
T ss_pred EEEecCCCCCCCcEEecccccCCCcccceecCCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEeccCCEEEEEE
Confidence 99999999999999987655455579999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCcHHHH
Q 012808 441 DPSKLWSRELI 451 (456)
Q Consensus 441 ~~~d~~~~~l~ 451 (456)
+.++++.++.+
T Consensus 412 ~~~~~~~~~~i 422 (521)
T PLN02551 412 DPSKLWSRELI 422 (521)
T ss_pred ehhHhhhhhhH
Confidence 99987664333
No 3
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-78 Score=629.17 Aligned_cols=351 Identities=40% Similarity=0.652 Sum_probs=309.8
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCC--CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~~--~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
|+|+|||||||+|+++|++++++|++..+ .++|||+||||++||.|+++++.+..... ... .++|...+
T Consensus 3 ~iV~KFGGTSva~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~-----~~~----~~~~~~~~ 73 (447)
T COG0527 3 LIVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRD-----AVA----EQRHRDIA 73 (447)
T ss_pred eEEEEeCCcccCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccc-----hhH----HHHHHHHH
Confidence 78999999999999999999999998653 57889999999999999999876543221 111 55666676
Q ss_pred HHhCCCHH---HHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC
Q 012808 160 DELGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (456)
Q Consensus 160 ~~l~~~~~---~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~ 236 (456)
.++..+.. .+.....++++.+.++....+.+++.+|+|+|+||++|+.||+++|+++|++|.+++++++++.+++.|
T Consensus 74 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~ 153 (447)
T COG0527 74 SELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNH 153 (447)
T ss_pred HHHhhcchhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcc
Confidence 66665442 233334444677888889999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeecchHH-HHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccC
Q 012808 237 TNADILEATYPA-VAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (456)
Q Consensus 237 ~~a~i~~~~~~~-i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta 315 (456)
+++++....+.+ +.+ +++.+.|||++||+|.+ ++|+++|||||||||||++||++|+|++|.||||||||||+
T Consensus 154 ~~a~i~~~~~~~~l~~-----~~~~~~v~Vv~GF~G~~-~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~Ta 227 (447)
T COG0527 154 GNARILDEDSERRLLR-----LLEEGKVPVVAGFQGIN-EDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTA 227 (447)
T ss_pred cccccchhhhhhhHHH-----HhcCCcEEEecCceeec-CCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccC
Confidence 999887655544 322 35678999999999999 58999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCe
Q 012808 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNV 395 (456)
Q Consensus 316 DP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nv 395 (456)
|||++|+|++|++|||+||+||+++|||||||+|++|+++++||++|+|+++|+.+||+|.++.......+++|+.++|+
T Consensus 228 DPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p~~~GTlI~~~~~~~~~~v~gIa~~~~~ 307 (447)
T COG0527 228 DPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAPGTLITAETESDEPVVKGIALDDNV 307 (447)
T ss_pred CCCCCCcceEcCccCHHHHHHHHHCCchhcCHHHHHHHHhcCCcEEEEecCCCCCCceEEecCCcCCCCceEEEEeCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999998864434689999999999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC--CCEEEEEEcCCCcCc
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--EVSLSLTLDPSKLWS 447 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS--e~sIsi~V~~~d~~~ 447 (456)
++|++.+..|.+.+|+++++|.+|+++||+|+||.++ +.+|+|+++.++...
T Consensus 308 ~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~ 361 (447)
T COG0527 308 ALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVSISFTVPESDAPR 361 (447)
T ss_pred EEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHH
Confidence 9999999999999999999999999999999999755 899999999888644
No 4
>PRK09084 aspartate kinase III; Validated
Probab=100.00 E-value=1.4e-75 Score=615.46 Aligned_cols=353 Identities=37% Similarity=0.540 Sum_probs=319.1
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (456)
|+|+|||||||+|++++++|+++|++. +.+++||||||+|+||.|+++++.+..+ .++.+.++.++++|..++++
T Consensus 1 m~V~KFGGtSv~~~e~i~~v~~ii~~~-~~~~vvVVSA~~~~Td~L~~~~~~~~~~----~~~~~~~~~i~~~h~~~~~~ 75 (448)
T PRK09084 1 LVVAKFGGTSVADFDAMNRSADIVLSN-PNTRLVVLSASAGVTNLLVALAEGAEPG----DERLALLDEIRQIQYAILDR 75 (448)
T ss_pred CEEEEECccCcCCHHHHHHHHHHHhcC-CCCEEEEEcCCCCchHHHHHHHHHHHcC----ccHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999873 4678999999999999999988776542 45777899999999999999
Q ss_pred hCCCH---HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 162 LGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 162 l~~~~---~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
|..+. ..+++++++|+++++++.. +.+++.+|+|+|+||++|+.+++++|+++|+++.++|++++ ++|+++|++
T Consensus 76 l~~~~~~~~~i~~~~~~l~~l~~~~~~--~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~-i~t~~~~~~ 152 (448)
T PRK09084 76 LGDPNVVREEIERLLENITVLAEAASL--ATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGR 152 (448)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhhhh--cCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHe-EEecCCCCc
Confidence 97654 3588899999999998866 77889999999999999999999999999999999999998 899999999
Q ss_pred cceeecch-HHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808 239 ADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (456)
Q Consensus 239 a~i~~~~~-~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (456)
++++.... ..+.+.+.+ +++.+ |||++||+|.+ .+|.++|||||||||+|+++|.+|+|+++++|||||||||+||
T Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~-v~Vv~Gf~g~~-~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP 229 (448)
T PRK09084 153 AEPDVAALAELAQEQLLP-LLAEG-VVVTQGFIGSD-EKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDP 229 (448)
T ss_pred ccccHHHHHHHHHHHHHH-hhcCC-cEEecCeeecC-CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCC
Confidence 88754322 233333333 34566 99999999998 6999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeEE
Q 012808 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM 397 (456)
Q Consensus 318 ~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nval 397 (456)
+++|+|+++++|||+||.||+++|++++||++++|+++++||++|+|+++|+.+||+|..... ....|++|+.++|+++
T Consensus 230 ~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~-~~~~v~~it~~~~i~l 308 (448)
T PRK09084 230 RIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGTWICNDTE-NPPLFRAIALRRNQTL 308 (448)
T ss_pred CCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCceEEecCCC-CCCeeEEEEeeCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999987543 2347999999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW 446 (456)
Q Consensus 398 Isv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~ 446 (456)
|+|.+.+|.+.+|+++++|+.|+++||+|+||++|+.+|||+|++++..
T Consensus 309 Itv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~sse~sIs~~i~~~~~~ 357 (448)
T PRK09084 309 LTLHSLNMLHARGFLAEVFGILARHKISVDLITTSEVSVSLTLDTTGST 357 (448)
T ss_pred EEEecCCCCccccHHHHHHHHHHHcCCeEEEEeccCcEEEEEEechhhh
Confidence 9999999999999999999999999999999999999999999988753
No 5
>PRK09034 aspartate kinase; Reviewed
Probab=100.00 E-value=1.6e-75 Score=616.19 Aligned_cols=352 Identities=33% Similarity=0.477 Sum_probs=317.3
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCc-------CchHHHHhhHHHHhcCCCccchHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~-------vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (456)
|+|+|||||||+|++++++|+++|++. .++++||||||+| +||.|+++++.+.+. .++.+.++.++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vvVVSA~~~~~~~~~~~Td~L~~~~~~~~~~----~~~~~~~~~~~~~ 75 (454)
T PRK09034 1 MKVVKFGGSSLASAEQFKKVLNIVKSD-PERKIVVVSAPGKRFKEDTKVTDLLILYAEAVLAG----EDYEDIFEAIIAR 75 (454)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHhcc-CCCEEEEEcCCcCCCCCccChHHHHHHHHHHHhcC----CcHHHHHHHHHHH
Confidence 689999999999999999999999965 4578999999986 999999988776542 3567789999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (456)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~ 234 (456)
|..++++|+.+...+++..++|+++...+ .+.+++.+|+|+|+||++|+.+|+++|+++|+++.++|++++|++|++
T Consensus 76 ~~~~~~~L~~~~~~~~~~~~~l~~l~~~~---~~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~ 152 (454)
T PRK09034 76 YAEIAKELGLDADILEKIEEILEHLANLA---SRNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTD 152 (454)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecC
Confidence 99999999887776677777777776543 467889999999999999999999999999999999999999999999
Q ss_pred CCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (456)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (456)
.|+++.+...++.++.+. ...+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|++++||||||||||
T Consensus 153 ~~~~a~i~~~~~~~~~~~-----~~~~~v~Vv~GFig~~-~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~t 226 (454)
T PRK09034 153 EPGNAQVLPESYDNLKKL-----RDRDEKLVIPGFFGVT-KDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYA 226 (454)
T ss_pred CcCceeEcHhhHHHHHHH-----HhcCCEEEecCccccC-CCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCc
Confidence 999998866565554432 2356799999999999 5999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCcc-ceeeEEEEec
Q 012808 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK-AVLTSIVLKR 393 (456)
Q Consensus 315 aDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~-~~i~~I~~~~ 393 (456)
+|||++|+|+++++|||+||.||+++|++||||+|++||++++|||+|+|+++|+++||+|+...+... ..|++|+.++
T Consensus 227 aDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~~~GT~I~~~~~~~~~~~Vk~It~~~ 306 (454)
T PRK09034 227 ANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVPDRDNKNKNPITGIAGDK 306 (454)
T ss_pred CCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCCEEEEcCCCCCCCccEEEeccccCccccceEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999987643322 4799999999
Q ss_pred CeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 394 nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
|+++|++.+.+|.+.+|+++++|+.|+++||+|+|+++|+.+|||+|+++++..
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~ss~~sis~~v~~~~~~~ 360 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMPSGIDDLSIIIRERQLTP 360 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEcCCCcEEEEEEeHHHhhH
Confidence 999999999999999999999999999999999999999999999999887643
No 6
>PRK06291 aspartate kinase; Provisional
Probab=100.00 E-value=3e-73 Score=600.94 Aligned_cols=364 Identities=42% Similarity=0.691 Sum_probs=329.9
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
|++|+|||||||+|++++++++++|++. .+.+++||||||+|+||.|+++++.+... ...+++.+.++.++++|..+
T Consensus 1 ~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~ 79 (465)
T PRK06291 1 MRLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDV-RDIAKVKDFIADLRERHYKA 79 (465)
T ss_pred CcEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999964 34578999999999999999988765431 11245777899999999999
Q ss_pred HHHhCCCH-------HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808 159 VDELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (456)
Q Consensus 159 ~~~l~~~~-------~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii 231 (456)
+++|..++ ..++.++++|+++++++..+++++++.+|+|+++||++|+.|++++|++.|+++.++++++++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~ 159 (465)
T PRK06291 80 IEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGII 159 (465)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEE
Confidence 99997543 24788899999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (456)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (456)
|++.|+++.+.+.++.++.+.+.. +++.+.|||++||+|.+ .+|+++|+|||||||+|+++|.+|+|+++++||||||
T Consensus 160 t~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~vpVv~Gfig~~-~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~G 237 (465)
T PRK06291 160 TDSNFGNARPLPKTYERVKERLEP-LLKEGVIPVVTGFIGET-EEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDG 237 (465)
T ss_pred ecCCCCceeechhhHHHHHHHHHH-HhhcCcEEEEeCcEEcC-CCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCC
Confidence 999999888766677777665544 46788999999999998 5999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEE
Q 012808 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVL 391 (456)
Q Consensus 312 V~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~ 391 (456)
|||+||+++|+|+++++|+|+||.+|+++|++++||+|++||+++|||++|+|+++|+++||+|..........|++|+.
T Consensus 238 i~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~gt~i~~~~~~~~~~V~~It~ 317 (465)
T PRK06291 238 VMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGTLITSDSESSKRVVKAVTL 317 (465)
T ss_pred CCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCCCCceEEEecccccCcccceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999998765434457999999
Q ss_pred ecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 392 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 392 ~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
++|+++|++.|.+|.+.+|+++++|++|+++||+|+|++ +|+.+|+|+|+.++...
T Consensus 318 ~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~ 375 (465)
T PRK06291 318 IKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEK 375 (465)
T ss_pred eCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHH
Confidence 999999999999999999999999999999999999998 68999999999987543
No 7
>PRK09181 aspartate kinase; Validated
Probab=100.00 E-value=1.2e-70 Score=579.35 Aligned_cols=346 Identities=25% Similarity=0.336 Sum_probs=290.7
Q ss_pred ceEEEEeCccccCCHHHHHHHHH-HHHcCC----CCCcEEEEcCCCcCchHHHHhhHHH-------HhcCCCccchHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAE-LILSFP----NERPVIVLSAMGKTTNKLLLAGEKA-------VSCGVTNISCIDEL 148 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~-iI~~~~----~~~~vvVVSA~g~vTd~Ll~~~~~~-------~~~~~~~~~~~~~l 148 (456)
+.+|+||||||| +++++|.+ ++.+.. ..+++||||||||+||+|+++.+++ ...+ .+.++.+.+
T Consensus 3 ~~~V~KFGGtSv---~~~~~v~~~iv~~~~~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~-~~~~~~~~l 78 (475)
T PRK09181 3 MHTVEKIGGTSM---SAFDAVLDNIILRPRKGEDLYNRIFVVSAYGGVTDALLEHKKTGEPGVYALFAKA-NDEAWREAL 78 (475)
T ss_pred ceEEEEECCCcH---HHHHHHHhheEeccccccCCCCeEEEEeCCCcchHHHHHhHhhcchhHHHHHHHh-cCccHHHHH
Confidence 359999999999 45666777 444331 2578999999999999999866411 1110 234677789
Q ss_pred HHHHHHHHHHHHHhCCCH-------HH-------HHHHHHHHHHHHH-HhhhcccCCHHHHHHHHhhhHHHHHHHHHHHH
Q 012808 149 SFVKDLHHRTVDELGIDR-------SI-------IATHLEELEQLLK-GIAMLKELTPRSRDYLVSFGECMSTRIFAAYL 213 (456)
Q Consensus 149 ~~i~~~~~~~~~~l~~~~-------~~-------i~~~~~~L~~ll~-gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L 213 (456)
+.|+++|..++++|..+. +. +..+|.+++++++ ++.++++++++.+|+|+|+||++|+.||+.+|
T Consensus 79 ~~i~~~~~~i~~~L~~~~~~~~~~~~~i~~~~~~~~~~l~~l~~~l~~~~~~l~e~~~~~~D~l~s~GE~lSa~lla~~L 158 (475)
T PRK09181 79 EAVEQRMLAINAELFADGLDLARADKFIRERIEEARACLIDLQRLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALLL 158 (475)
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhccChhHhHHHhhHhHHHHHHHHHHHH
Confidence 999999999999997421 12 3667777788777 88889999999999999999999999999999
Q ss_pred HHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHH
Q 012808 214 NKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATT 293 (456)
Q Consensus 214 ~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~ 293 (456)
+++|+++.++|+..+ ...+ . ....+++.+.+.. |...+.|||++||++ + ++|++||||||||||||++
T Consensus 159 ~~~Gi~a~~ld~~~~--~~~~------~-~~~~~~i~~~l~~-~~~~~~v~Vv~GF~~-~-~~G~itTLGRGGSDyTAai 226 (475)
T PRK09181 159 QNRGVNARFVDLTGW--DDDD------P-LTLDERIKKAFKD-IDVTKELPIVTGYAK-C-KEGLMRTFDRGYSEMTFSR 226 (475)
T ss_pred HhCCCCeEEeccccc--cCCc------c-cchHHHHHHHHhh-hccCCcEEEecCCcC-C-CCCCEEecCCChHHHHHHH
Confidence 999999999987543 1111 1 1123444444332 223567999999975 5 4799999999999999999
Q ss_pred HHHHcCCceEEEeecCCccccCCCCCC--CCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCC
Q 012808 294 IGKALGLQEIQVWKDVDGVLTCDPNIH--PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP 371 (456)
Q Consensus 294 lA~~L~A~~l~i~TDV~GV~taDP~~v--~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~ 371 (456)
+|++|+|++++|||||+ |||+|||++ |+|++|++|||+||.||+++||+||||+|++||++++||++|+|+++|+.+
T Consensus 227 lAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~nt~~p~~~ 305 (475)
T PRK09181 227 IAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPEHP 305 (475)
T ss_pred HHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCCCC
Confidence 99999999999999996 999999999 699999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeccCCccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCC
Q 012808 372 GTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPS 443 (456)
Q Consensus 372 GT~I~~~~~~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~ 443 (456)
||+|+....+....|++|+.++|+++|+|.+.+|.+.+|+++++|++|+++||+|+|+++|+.+|||+|+.+
T Consensus 306 GT~I~~~~~~~~~~ik~It~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~ss~~sis~~v~~~ 377 (475)
T PRK09181 306 GTLITKDYVSEQPRVEIIAGSDKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKATNANTITHYLWGS 377 (475)
T ss_pred CeEEecCcccccccceeEeccCCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEEecCcEEEEEEcCC
Confidence 999987543334568999999999999999999999999999999999999999999999999999999887
No 8
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=100.00 E-value=4.6e-70 Score=605.24 Aligned_cols=352 Identities=26% Similarity=0.363 Sum_probs=300.9
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
+.|+|+|||||||+|++++++|+++|++..+.+++||||||+|+||+|+++++.+.. ......+.++.++++|..++
T Consensus 10 M~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~~vVVVSA~~~~Td~L~~~~~~~~~---~~~~~~~~l~~i~~~h~~~~ 86 (810)
T PRK09466 10 MGRQLHKFGGSSLADAKCYRRVAGILAEYSQPDDLVVVSAAGKTTNQLISWLKLSQT---DRLSAHQVQQTLRRYQQDLI 86 (810)
T ss_pred ceeEEEEECccccCCHHHHHHHHHHHhhhccCCEEEEEcCCCCCHHHHHHHHHHhhc---CchhHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999765556899999999999999998875532 12345677899999999999
Q ss_pred HHhCCCHH------HHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEee
Q 012808 160 DELGIDRS------IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (456)
Q Consensus 160 ~~l~~~~~------~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~ 233 (456)
++|..+.. .|.+.+++|+++++ ++++++.+|+|+|+||++|+.||+.+|+++|+++.++|++++ ++.
T Consensus 87 ~~L~~~~~~~~~~~~i~~~~~~l~~~l~-----~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~--i~~ 159 (810)
T PRK09466 87 EGLLPAEQARSLLSRLISDLERLAALLD-----GGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSF--LRA 159 (810)
T ss_pred HHhhcchhhhHHHHHHHHHHHHHHHHhh-----ccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHh--eec
Confidence 99976431 25556666666665 378899999999999999999999999999999999999995 555
Q ss_pred cCCCCccee-ecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808 234 DDFTNADIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (456)
Q Consensus 234 ~~~~~a~i~-~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (456)
+.+.++++. ..+.+.+.+.+.+ ..+.+||++||+|.+ ++|++||||||||||||+++|++|+|++++||||||||
T Consensus 160 ~~~~~~~i~~~~~~~~l~~~~~~---~~~~v~Vv~GF~g~~-~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi 235 (810)
T PRK09466 160 ERAAQPQVDEGLSYPLLQQLLAQ---HPGKRLVVTGFISRN-EAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGV 235 (810)
T ss_pred CCCCCcccchhhhHHHHHHHHhc---cCCeEEEeeCccccC-CCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 555556653 2334444443321 134799999999999 59999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEe
Q 012808 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLK 392 (456)
Q Consensus 313 ~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~ 392 (456)
||+|||++|+|++|++|||+||.||+++||+||||+|++|++++||||+|+|+|+|+.+||+|..... ....+++|+.+
T Consensus 236 ~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~~~GT~I~~~~~-~~~~v~~It~~ 314 (810)
T PRK09466 236 YSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLA-SGTGARIVTSL 314 (810)
T ss_pred ccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCeEEEecCCCCCCCceEEecCcc-cccceeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999976422 23358999999
Q ss_pred cCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808 393 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW 446 (456)
Q Consensus 393 ~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~ 446 (456)
+|+++|++.+.+|.+.+|+++++|+.|+++||+|+|++ +++.+|+|+++.++..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~~~~~~ 370 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYTSEVAD 370 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEeHHHHH
Confidence 99999999998888999999999999999999999996 5577899999866543
No 9
>PRK05925 aspartate kinase; Provisional
Probab=100.00 E-value=2.8e-69 Score=564.53 Aligned_cols=346 Identities=27% Similarity=0.417 Sum_probs=303.0
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (456)
.|+|+|||||||+|++++++++++|++. .+++||||||+|+||.|+++++.+. ....+.++.++++|..+++
T Consensus 2 ~~~V~KFGGtSv~~~e~i~~v~~ii~~~--~~~vVVvSA~~~~Td~L~~~~~~a~------~~~~~~~~~i~~~~~~~~~ 73 (440)
T PRK05925 2 APLVYKFGGTSLGTAESIRRVCDIICKE--KPSFVVVSAVAGVTDLLEEFCRLSK------GKREALTEKIREKHEEIAK 73 (440)
T ss_pred CcEEEEECccccCCHHHHHHHHHHHhcC--CCEEEEECCCCCCHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999863 5689999999999999999877542 2234578899999999999
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcc
Q 012808 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD 240 (456)
Q Consensus 161 ~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~ 240 (456)
+|..+. .+..++++|+++++ .++++++.+|+++++||++|+.|++++|++.|+++.++|++++ ++|++.|++++
T Consensus 74 ~l~~~~-~~~~~~~~L~~~~~----~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~ 147 (440)
T PRK05925 74 ELGIEF-SLSPWWERLEHFED----VEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRAV 147 (440)
T ss_pred Hhhcch-hhhHHHHHHHHHHH----hCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHh-EeecCCccccc
Confidence 997543 25566677777765 4577889999999999999999999999999999999999998 89999999888
Q ss_pred eeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCC
Q 012808 241 ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320 (456)
Q Consensus 241 i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v 320 (456)
++ .+.+.+.+....++.+.|||++||+|.+ ++|+++|||||||||+|+++|.+|+|+++++|||||||||+||+++
T Consensus 148 ~~---~~~~~~~~~~~~~~~~~v~Vv~GF~g~~-~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~ 223 (440)
T PRK05925 148 PD---LALMQTAWHELALQEDAIYIMQGFIGAN-SSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKII 223 (440)
T ss_pred cC---HHHHHHHHHHhhccCCcEEEecCcceeC-CCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCC
Confidence 74 2333344443334566899999999999 5999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC--CccceeeEEEEecCeEEE
Q 012808 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--MSKAVLTSIVLKRNVTML 398 (456)
Q Consensus 321 ~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--~~~~~i~~I~~~~nvalI 398 (456)
|+|++|++++|+||.+|+++|++++||++++||+++|||++|+|+++|+++||+|.+... .....|++|+.++|+++|
T Consensus 224 ~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~~~GT~i~~~~~~~~~~~~ik~It~~~~~~~i 303 (440)
T PRK05925 224 KDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYASDKEVSYEPRIKALSLKQNQALW 303 (440)
T ss_pred CCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCCcEEEecCCCCCCCccEEecCCccccCCCceEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999987531 233469999999999999
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808 399 DIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW 446 (456)
Q Consensus 399 sv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~ 446 (456)
++.+.. ..+++++++|+.|+++||+|+++++++.+|+|+++.++..
T Consensus 304 ~v~~~~--~~~~~~~~if~~l~~~~I~vd~i~s~~~sis~~i~~~~~~ 349 (440)
T PRK05925 304 SVDYNS--LGLVRLEDVLGILRSLGIVPGLVMAQNLGVYFTIDDDDIS 349 (440)
T ss_pred EEecCC--cchhHHHHHHHHHHHcCCcEEEEeccCCEEEEEEechhcc
Confidence 997643 3578899999999999999999988899999999988753
No 10
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=100.00 E-value=1.4e-68 Score=596.80 Aligned_cols=356 Identities=32% Similarity=0.505 Sum_probs=314.4
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (456)
|+|+|||||||++++++++++++|++.. +.++|||||||+|+||.|+++++.+.+. +.++.+.++.++++|. +++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~vVVVSA~~~vTd~L~~~~~~~~~~---~~~~~~~~~~~~~~h~-~~~ 76 (819)
T PRK09436 1 MRVLKFGGTSVANAERFLRVADIIESNARQEQVAVVLSAPAKVTNHLVAMIEKAAKG---DDAYPEILDAERIFHE-LLD 76 (819)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHhhcccCCEEEEEcCCcCcHHHHHHHHHHHhcC---CchHHHHHHHHHHHHH-HHH
Confidence 6899999999999999999999999753 3578999999999999999988876542 2345566788888884 222
Q ss_pred Hh---CCC------HHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808 161 EL---GID------RSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (456)
Q Consensus 161 ~l---~~~------~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii 231 (456)
.+ ... ...|.+++++|++++++++++++++++.+|+|+|+||++|+.|++++|++.|+++.++|++++ ++
T Consensus 77 ~l~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~ 155 (819)
T PRK09436 77 GLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPREL-LL 155 (819)
T ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHe-EE
Confidence 22 111 135888999999999999999999999999999999999999999999999999999999998 88
Q ss_pred eecCCCCccee-ecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 232 TTDDFTNADIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 232 t~~~~~~a~i~-~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
|++.|++++++ +.+.+.+++. +...+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++++|||||
T Consensus 156 t~~~~~~~~~~~~~~~~~i~~~----~~~~~~v~Vv~Gfig~~-~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVd 230 (819)
T PRK09436 156 ADGHYLESTVDIAESTRRIAAS----FIPADHVILMPGFTAGN-EKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVD 230 (819)
T ss_pred ecCCCCCceechHhhHHHHHHH----HhcCCcEEEecCcccCC-CCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCC
Confidence 88888888774 3333334333 23457899999999998 699999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEE
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIV 390 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~ 390 (456)
||||+||+++|+|++|++|||+||.+|+++|++++||+|++||+++|||++|+|+++|+.+||+|+.+.++....|++|+
T Consensus 231 Gvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~~~GT~I~~~~~~~~~~Vk~It 310 (819)
T PRK09436 231 GVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGAESDEDSLPVKGIS 310 (819)
T ss_pred ceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCCCCceEEEecCcccccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999876433445799999
Q ss_pred EecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 391 ~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
.++|+++|+++|.+|.+.+|+++++|++|+++||+|+|++ +|+.+|+|+|++++...
T Consensus 311 ~~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~ 369 (819)
T PRK09436 311 NLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAK 369 (819)
T ss_pred EeCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHH
Confidence 9999999999999999999999999999999999999998 68999999999987643
No 11
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=1.4e-66 Score=585.31 Aligned_cols=358 Identities=29% Similarity=0.486 Sum_probs=313.3
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHH
Q 012808 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (456)
+.|+|+|||||||+|++++++++++|++. .+++++||||||+|+||+|+++++.+.+ .++.+.++.|+++|..
T Consensus 7 ~~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~-----~~~~~~~~~i~~~~~~ 81 (861)
T PRK08961 7 DRWVVLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGA-----GDSASRVAAIRQRHRE 81 (861)
T ss_pred CCcEEEEECccccCCHHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhc-----cCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999853 2467899999999999999998764432 3567789999999999
Q ss_pred HHHHhCCCHH-HHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC-
Q 012808 158 TVDELGIDRS-IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD- 235 (456)
Q Consensus 158 ~~~~l~~~~~-~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~- 235 (456)
++++|+.+.. .+.+.+++|+++++++.++++.+++.+|.++|+||++|+.||+++|++.|+++.++|++++ ++++++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-~~~~~~~ 160 (861)
T PRK08961 82 LLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREW-LTALPQP 160 (861)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHh-EeecCcc
Confidence 9999976543 6889999999999999999999999999999999999999999999999999999999998 556552
Q ss_pred CC--Ccceeecch-HHHHHHHhhccccC-CceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808 236 FT--NADILEATY-PAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (456)
Q Consensus 236 ~~--~a~i~~~~~-~~i~~~l~~~ll~~-~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (456)
+. ..+...... ....+.+...++.. +.|||++||+|.+ .+|+++||||||||++|+++|.+|+|+++++||||||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~-~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~G 239 (861)
T PRK08961 161 NQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARN-ADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPG 239 (861)
T ss_pred ccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeC-CCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 11 122211110 11222233222333 3599999999998 5899999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEE
Q 012808 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVL 391 (456)
Q Consensus 312 V~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~ 391 (456)
|||+||+++|+|++|++|||+||.+|+++|++++||+|++||+++||||+|+|+++|+.+||+|..+. +....|++|+.
T Consensus 240 v~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~~~gT~I~~~~-~~~~~v~~It~ 318 (861)
T PRK08961 240 MFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSGTSIDGDA-EPVPGVKAISR 318 (861)
T ss_pred cccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCCCCccEEeCCC-CCCCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998754 23457999999
Q ss_pred ecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCc
Q 012808 392 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (456)
Q Consensus 392 ~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~ 445 (456)
++|+++|+|.+.+|.+.+|+++++|+.|+++||+|+||++|+.+|+|++++.+.
T Consensus 319 ~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~sse~sis~~i~~~~~ 372 (861)
T PRK08961 319 KNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISSSETNVTVSLDPSEN 372 (861)
T ss_pred ECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEEcCCCEEEEEEccccc
Confidence 999999999999999999999999999999999999999999999999998775
No 12
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=100.00 E-value=1.7e-66 Score=517.00 Aligned_cols=288 Identities=39% Similarity=0.565 Sum_probs=259.8
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (456)
|+|+|||||||+|++++++++++|+.. ++++|||||||+|+||.|+++++.+.++. ..++.+.++.++++|..++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vVVVSA~~~vTd~L~~~~~~~~~~~--~~~~~~~l~~l~~~h~~~~~~ 77 (292)
T cd04258 1 MVVAKFGGTSVADYAAMLRCAAIVKSD-ASVRLVVVSASAGVTNLLVALADAAESGE--EIESIPQLHEIRAIHFAILNR 77 (292)
T ss_pred CEEEEECccccCCHHHHHHHHHHHhcc-CCCEEEEEeCCCCchHHHHHHHHHHhcCC--cchhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999975 56789999999999999999888765532 123455799999999999999
Q ss_pred hCCCHH---HHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 162 LGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 162 l~~~~~---~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
|..+.. .|..++++|+++++++.++++++++.+|+|+++||++|+.+++++|+++|+++.++|++++ ++|+++|++
T Consensus 78 L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~ 156 (292)
T cd04258 78 LGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGR 156 (292)
T ss_pred hhcchhHHHHHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHe-EEecCCCcc
Confidence 987653 5888999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred cceeecc-hHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808 239 ADILEAT-YPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (456)
Q Consensus 239 a~i~~~~-~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (456)
++++... ..++.+.+.. +.++.|||++||+|.+ .+|++|||||||||++|+++|.+|+|+++++||||+||||+||
T Consensus 157 a~~~~~~~~~~~~~~~~~--~~~~~v~Vv~Gf~g~~-~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP 233 (292)
T cd04258 157 AAPDLNALAELAAKLLKP--LLAGTVVVTQGFIGST-EKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDP 233 (292)
T ss_pred ccccHHHHHHHHHHHHHH--hhcCCEEEECCccccC-CCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCC
Confidence 9885432 3333333322 2355899999999998 5999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (456)
Q Consensus 318 ~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (456)
+++|+|+++++|||+||.||+++|++++||+|+.|+++++|||+|+|+++|+++||+|+
T Consensus 234 ~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~~~GT~I~ 292 (292)
T cd04258 234 RICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLIT 292 (292)
T ss_pred CCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCCceeC
Confidence 99999999999999999999999999999999999999999999999999999999995
No 13
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=100.00 E-value=6.8e-66 Score=542.12 Aligned_cols=349 Identities=37% Similarity=0.593 Sum_probs=301.4
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
+|+|+|||||||+|++++++++++|.... +.+++||||||+++||.|+++++.+... ...+.++.+.++|..+
T Consensus 1 ~~~V~KFGGssv~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~-----~~~~~~~~i~~~~~~~ 75 (441)
T TIGR00657 1 ALIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPG-----PSKEFLEKIREKHIEI 75 (441)
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHH
Confidence 57999999999999999999999999642 4578999999999999999988766432 1256789999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
+++|. +. ...++++++...+.. ...+++.+|+++++||++|+.+++++|+++|++++++++.+.+++++++|++
T Consensus 76 ~~~l~-~~----~~~~~~~~~~~~~~~-~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~ 149 (441)
T TIGR00657 76 LERLI-PQ----AIAEELKRLLDAELV-LEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGR 149 (441)
T ss_pred HHHhh-hH----HHHHHHHHHHHHHHh-hhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCc
Confidence 99997 32 233334444433321 1224678899999999999999999999999999999999999999998887
Q ss_pred cc-eeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808 239 AD-ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (456)
Q Consensus 239 a~-i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (456)
+. +...+...+. .+++.+.|||++||+|.+ .+|+++++||||||++|+++|.+|+|+++++||||||||++||
T Consensus 150 ~~~~~~~~~~~l~-----~~l~~~~vpVv~G~~g~~-~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP 223 (441)
T TIGR00657 150 ARVIIEILTERLE-----PLLEEGIIPVVAGFQGAT-EKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDP 223 (441)
T ss_pred eeecHhhhHHHHH-----HHHhcCCEEEEeCcEeeC-CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCC
Confidence 65 3333333222 235678999999999998 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC-CccceeeEEEEecCeE
Q 012808 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD-MSKAVLTSIVLKRNVT 396 (456)
Q Consensus 318 ~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~-~~~~~i~~I~~~~nva 396 (456)
+++|++++++++||+||.+|+++|++++||+|++|+++++||++|+|+++|+.+||+|.+..+ +.+..+++|+.++|++
T Consensus 224 ~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~~~~~~~i~~It~~~~v~ 303 (441)
T TIGR00657 224 RIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPEAPGTLIVASTKEMEEPIVKGLSLDRNQA 303 (441)
T ss_pred CCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHHHHHcCCeEEEecCCCCCCCceEEEeCCCccccCccceEEEeCCEE
Confidence 999999999999999999999999999999999999999999999999999999999987643 3344699999999999
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
+|++.|.+|.+ +|+++++|+.|+++||+|++++ +|+.+|+|+|+.++...
T Consensus 304 ~Isv~g~~~~~-~g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~ 355 (441)
T TIGR00657 304 RVTVSGLGMKG-PGFLARVFGALAEAGINVDLITQSSSETSISFTVDKEDADQ 355 (441)
T ss_pred EEEEECCCCCC-ccHHHHHHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHH
Confidence 99999999998 9999999999999999999996 67899999999887543
No 14
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=100.00 E-value=2.1e-66 Score=515.43 Aligned_cols=281 Identities=35% Similarity=0.514 Sum_probs=250.1
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCC-------cCchHHHHhhHHHHhcCCCccchHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMG-------KTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g-------~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (456)
|.|+|||||||+|++++++++++|+.. .++++||||||+ |+||.|+++++.+.+. .++.+.++.++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vvVvSA~~~~~~~~~~vTd~L~~~~~~~~~~----~~~~~~~~~i~~~ 75 (288)
T cd04245 1 MKVVKFGGSSLASAEQFQKVKAIVKAD-PERKIVVVSAPGKRFKDDTKVTDLLILYAEAVLAG----EDTESIFEAIVDR 75 (288)
T ss_pred CEEEEECcCccCCHHHHHHHHHHHHhc-CCCEEEEEcCCCCCCCchhhHHHHHHHHHHHHhcC----cchHHHHHHHHHH
Confidence 689999999999999999999999965 467899999998 5999999988766442 2456789999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (456)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~ 234 (456)
|..++++|+.+.+.+++..+.++++.+. ...++++.+|+|+++||++|+.+|+.+|++.|+++.++|++++|++|++
T Consensus 76 h~~~~~~L~~~~~~~~~i~~~~~~l~~~---~~~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~ 152 (288)
T cd04245 76 YAEIADELGLPMSILEEIAEILENLANL---DYANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTD 152 (288)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecC
Confidence 9999999987765555555555555442 2356889999999999999999999999999999999999999999999
Q ss_pred CCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (456)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (456)
.|+++++...+.+++.+. +..+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++++|||||||||
T Consensus 153 ~~~~a~~~~~~~~~~~~~-----~~~~~v~Vv~Gf~g~~-~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvyt 226 (288)
T cd04245 153 EPGNAQILPESYQKIKKL-----RDSDEKLVIPGFYGYS-KNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYA 226 (288)
T ss_pred CccccccchhhHHHHHHH-----HhCCCEEEEeCccccC-CCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceEC
Confidence 999998876666655543 3457899999999998 5999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (456)
Q Consensus 315 aDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (456)
+||+++|+|+++++|||+||.||+++|++||||+|+.|+++++|||+|+|+++|+.+||+|.
T Consensus 227 aDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~~~GT~I~ 288 (288)
T cd04245 227 ANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLIV 288 (288)
T ss_pred CCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCcEEEeeCCCCCCCCceeC
Confidence 99999999999999999999999999999999999999999999999999999999999984
No 15
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=100.00 E-value=1e-65 Score=514.21 Aligned_cols=290 Identities=55% Similarity=0.830 Sum_probs=264.6
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcC-CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808 83 CVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (456)
Q Consensus 83 ~V~KFGGsSv~s~~~~~~va~iI~~~-~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (456)
+|+|||||||+|++++++++++|++. .+++++||||||+|+||.|+++++.+.... ..++.+.++.+.++|..++++
T Consensus 2 ~V~KFGGtSv~~~~~~~~v~~iI~~~~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~--~~~~~~~l~~i~~~h~~~~~~ 79 (298)
T cd04244 2 LVMKFGGTSVGSAERIRHVADLVGTYAEGHEVVVVVSAMGGVTDRLLLAAEAAVSGR--IAGVKDFIEILRLRHIKAAKE 79 (298)
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHhhcCCCEEEEEeCCCCcHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999974 346789999999999999999887664321 235667799999999999999
Q ss_pred hCCCH------HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC
Q 012808 162 LGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (456)
Q Consensus 162 l~~~~------~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~ 235 (456)
|..+. +.|+.++++|+++++++..+++++++.+|+|+|+||++|+.|++++|+++|+++.++++++++++|+++
T Consensus 80 l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~ 159 (298)
T cd04244 80 AISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDN 159 (298)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCc
Confidence 98653 458899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccC
Q 012808 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (456)
Q Consensus 236 ~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta 315 (456)
++++.+...++.++.+.+.. +++.+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|++++|||||+|||++
T Consensus 160 ~~~a~~~~~~~~~i~~~l~~-ll~~~~vpVv~Gfig~~-~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~ 237 (298)
T cd04244 160 FGNARPLPATYERVRKRLLP-MLEDGKIPVVTGFIGAT-EDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTA 237 (298)
T ss_pred ccccccchhHHHHHHHHHHH-HhhcCCEEEEeCccccC-CCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 88877665566777766653 46678999999999998 58999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (456)
Q Consensus 316 DP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (456)
||+++|+|+++++|||+||.+|+++|++++||+|++||+++||||+|+|+++|+.+||+|+
T Consensus 238 dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~~~GT~I~ 298 (298)
T cd04244 238 DPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT 298 (298)
T ss_pred CCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCCCCCCEeC
Confidence 9999999999999999999999999999999999999999999999999999999999995
No 16
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=100.00 E-value=4e-65 Score=508.54 Aligned_cols=286 Identities=39% Similarity=0.619 Sum_probs=257.9
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (456)
|+|+|||||||+|++++++++++|.+.. +.+++||||||+|+||.|+++++.+.+. +..+...++.++++|..+++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~vvVvSA~~gvTd~L~~~~~~~~~~---~~~~~~~l~~i~~~h~~~~~ 77 (294)
T cd04257 1 MKVLKFGGTSLANAERIRRVADIILNAAKQEQVAVVVSAPGKVTDLLLELAELASSG---DDAYEDILQELESKHLDLIT 77 (294)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCcHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999653 4678999999999999999988866542 22355679999999999999
Q ss_pred HhCCCH------HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808 161 ELGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (456)
Q Consensus 161 ~l~~~~------~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~ 234 (456)
+|..+. ..|++.+++|+++++++.++++++++.+|+|+|+||+||+.||+++|+++|+++.++|++++ ++|++
T Consensus 78 ~l~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~ 156 (294)
T cd04257 78 ELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDG 156 (294)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHe-eEecC
Confidence 997653 35888999999999999999999999999999999999999999999999999999999996 88999
Q ss_pred CCCCcceee-cchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808 235 DFTNADILE-ATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (456)
Q Consensus 235 ~~~~a~i~~-~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (456)
+|+++++.. .+..++.+.+. ..+.|||++||+|.+ .+|.++||||||||++|+++|.+|+|+++++||||||||
T Consensus 157 ~~~~a~~~~~~~~~~l~~~~~----~~~~v~Vv~Gfig~~-~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvy 231 (294)
T cd04257 157 GYLNAVVDIELSKERIKAWFS----SNGKVIVVTGFIASN-PQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVY 231 (294)
T ss_pred CCCceEechHhhHHHHHHHHh----cCCCEEEecCcccCC-CCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccC
Confidence 999888854 33444444322 227899999999998 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (456)
Q Consensus 314 taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (456)
|+||+++|+|+++++|||+||.+|+++|++++||+|++|++++|||++|+|+++|+.+||+|+
T Consensus 232 t~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~~~GT~I~ 294 (294)
T cd04257 232 SADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLIS 294 (294)
T ss_pred CCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCCCCCCEeC
Confidence 999999999999999999999999999999999999999999999999999999999999994
No 17
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=100.00 E-value=7.4e-65 Score=506.39 Aligned_cols=285 Identities=40% Similarity=0.642 Sum_probs=256.7
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (456)
|+|+|||||||+|++++++++++|.+..+.+++||||||+|+||.|+++++.+.... ..+.+.++.++++|..++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~vvVvSA~~gvTd~L~~~~~~a~~~~---~~~~~~l~~i~~~h~~~~~~ 77 (293)
T cd04243 1 MKVLKFGGTSVASAERIRRVADIIKSRASSPVLVVVSALGGVTNRLVALAELAASGD---DAQAIVLQEIRERHLDLIKE 77 (293)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCCCcHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999875456889999999999999999888765432 23344689999999999999
Q ss_pred hCCCH------HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC
Q 012808 162 LGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (456)
Q Consensus 162 l~~~~------~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~ 235 (456)
|..+. ..|..++++|+++++++.++++++++.+|+|+++||+||+.|++.+|+++|+++.++|++++ +++++.
T Consensus 78 L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~ 156 (293)
T cd04243 78 LLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDG 156 (293)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHe-EEecCC
Confidence 98654 35888999999999999999999999999999999999999999999999999999999987 888888
Q ss_pred CCCcceeecc-hHHHHHHHhhccccC-CceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808 236 FTNADILEAT-YPAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (456)
Q Consensus 236 ~~~a~i~~~~-~~~i~~~l~~~ll~~-~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (456)
++++.+.... ...+... +.. +.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++++||||||||
T Consensus 157 ~~~~~~~~~~s~~~~~~~-----~~~~~~v~Vv~Gfig~~-~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiy 230 (293)
T cd04243 157 FLNAVVDLKLSKERLAQL-----LAEHGKVVVTQGFIASN-EDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVY 230 (293)
T ss_pred CCcchhhhHHHHHHHHHH-----HhcCCCEEEecCccccC-CCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccC
Confidence 8888764432 3333332 233 7899999999998 599999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (456)
Q Consensus 314 taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (456)
|+||+++|+|++|++|||+||.+|+++|++++||+|++|+++++||++|+|+++|+.+||+|+
T Consensus 231 t~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~~~GT~I~ 293 (293)
T cd04243 231 TADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLIS 293 (293)
T ss_pred CCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEeC
Confidence 999999999999999999999999999999999999999999999999999999999999994
No 18
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=100.00 E-value=1e-64 Score=505.50 Aligned_cols=284 Identities=34% Similarity=0.550 Sum_probs=253.0
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
|+|+|||||||+|++++++++++|++.. +++++||||||+|+||.|+++++.+.. ..+.+.++.+.++|..++
T Consensus 1 ~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~-----~~~~~~l~~i~~~~~~~~ 75 (295)
T cd04259 1 WVVLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALL-----DEHHSLFNAIQSRHLNLA 75 (295)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhc-----cChHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998642 357899999999999999998876643 225667999999999999
Q ss_pred HHhCCCH-HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 160 DELGIDR-SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 160 ~~l~~~~-~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
++|..+. ..|+..+++|+++++++.++++++++.+|+|+|+||++|+.||+.+|++.|+++.++|++++ +++++++++
T Consensus 76 ~~L~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~~~~~~~~ 154 (295)
T cd04259 76 EQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDAREL-LTATPTLGG 154 (295)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHh-eeecccccc
Confidence 9998654 46889999999999999999999999999999999999999999999999999999999998 777777754
Q ss_pred c-------cee-ecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 239 A-------DIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 239 a-------~i~-~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
+ ++. +.+..++.+.+ ...+.|||++||+|.+ ++|++|||||||||++|+++|.+|+|+++++||||+
T Consensus 155 ~~~~~~~a~v~~~~~~~~l~~~l----~~~~~v~Vv~GFig~~-~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~ 229 (295)
T cd04259 155 ETMNYLSARCESEYADALLQKRL----ADGAQLIITQGFIARN-AHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVP 229 (295)
T ss_pred cccccccceehhhhhHHHHHHHH----hcCCceeEeCCceeeC-CCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCC
Confidence 3 331 22333444332 2235799999999999 599999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (456)
|||++||+++|+|++|++|||+||.+|+++|++++||+|++|+++++||++|+|+++|+.+||+|+
T Consensus 230 Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~~~GT~I~ 295 (295)
T cd04259 230 GLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTLIT 295 (295)
T ss_pred ccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCCCCCcEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999995
No 19
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=100.00 E-value=2.4e-64 Score=503.97 Aligned_cols=288 Identities=32% Similarity=0.500 Sum_probs=246.1
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCC------cCchHHHHhhHHHHhcCCCccchHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMG------KTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g------~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~ 153 (456)
|+|+|||||||+|++ ++++++|.+. .+.+++||||||+ |+||.|+++++.+.... ..++.+.++.+++
T Consensus 2 ~~V~KFGGtSv~~~~--~~v~~~i~~~~~~~~~~vVVvSA~~~~~~~~gvTd~L~~~~~~a~~~~--~~~~~~~l~~i~~ 77 (306)
T cd04247 2 WVVQKFGGTSVGKFP--DNIADDIVKAYLKGNKVAVVCSARSTGTKAEGTTNRLLQAADEALDAQ--EKAFHDIVEDIRS 77 (306)
T ss_pred CEEEEeCchhhccHH--HHHHHHHHhhhccCCceEEEEeccccCCCccChHHHHHHHHHHHHhhc--cccHHHHHHHHHH
Confidence 789999999999984 7999866642 2457899999998 99999999988765321 3467788999999
Q ss_pred HHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEeccc
Q 012808 154 LHHRTVDELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAF 226 (456)
Q Consensus 154 ~~~~~~~~l~~~~-------~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~ 226 (456)
+|..++++|..+. ..+++++++|+++++++.++++++++.+|+|+|+||+||+.||+.+|++.|+++.++|++
T Consensus 78 ~h~~~~~~L~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~ 157 (306)
T cd04247 78 DHLAAARKFIKNPELQAELEEEINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLS 157 (306)
T ss_pred HHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHH
Confidence 9999999997643 247788999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeecCCCCcceeecchHHHHHHHhhcccc-CCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEE
Q 012808 227 DIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (456)
Q Consensus 227 ~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~-~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i 305 (456)
++ +.++.. ........+.++.+.+...+.+ .+.|||++||+|.+ .+|++||||||||||+|+++|..|+|++++|
T Consensus 158 ~~-i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~-~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i 233 (306)
T cd04247 158 HI-VDLDFS--IEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNV-PGGLLSQIGRGYTDLCAALCAVGLNADELQI 233 (306)
T ss_pred Hh-eecCCC--ccccccchhHHHHHHHHHHhhccCCceEEeeccEecC-CCCCeEEeCCCchHHHHHHHHHHcCCCEEEE
Confidence 96 444332 1111111112233333332222 46799999999998 5899999999999999999999999999999
Q ss_pred eecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEee
Q 012808 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377 (456)
Q Consensus 306 ~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~ 377 (456)
||||+||||+||+++|+|++|++|||+||.||+++|++||||+|++||+++||||+|+|+++|+.+||+|.+
T Consensus 234 ~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~Ipi~i~nt~~P~~~GT~I~~ 305 (306)
T cd04247 234 WKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVIYP 305 (306)
T ss_pred eecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcCCcEEEecCCCCCCCCcEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999975
No 20
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=100.00 E-value=1.6e-60 Score=495.59 Aligned_cols=309 Identities=39% Similarity=0.624 Sum_probs=275.3
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
|++|+|||||+|.+++.+++++++|+.. .+.+++|||||++++||+|+++++....
T Consensus 1 ~~iViK~GGs~~~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~---------------------- 58 (401)
T TIGR00656 1 ELIVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIR---------------------- 58 (401)
T ss_pred CcEEEEECCcCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhc----------------------
Confidence 5689999999999999999999999854 3467899999999999999876431100
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
...++..+|.++++||++|+.+++++|+++|+++.++++.+.++++++.+++
T Consensus 59 ----------------------------~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~ 110 (401)
T TIGR00656 59 ----------------------------DAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGN 110 (401)
T ss_pred ----------------------------cCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCc
Confidence 1235677899999999999999999999999999999999988999998888
Q ss_pred cceeecch-HHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808 239 ADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (456)
Q Consensus 239 a~i~~~~~-~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (456)
+++.+... ..+.+ +++.+.|||++||+|.+ .+|.++|+||||||++|+++|.+|+|+++++|||||||||+||
T Consensus 111 ~~~~~~~~~~~l~~-----~l~~~~vpVi~g~~~~~-~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP 184 (401)
T TIGR00656 111 AKIDIIATEERLLP-----LLEEGIIVVVAGFQGAT-EKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDP 184 (401)
T ss_pred eEeeecchHHHHHH-----HHhCCCEEEecCcceeC-CCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCC
Confidence 87765444 33332 35678999999999988 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeEE
Q 012808 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM 397 (456)
Q Consensus 318 ~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nval 397 (456)
+++|+|+++++|||+||.+|+++|++++||+|++||++++||++|+|+++|+ +||+|.+..+ ..+.+++|+.++|+++
T Consensus 185 ~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~-~gT~I~~~~~-~~~~v~~I~~~~~va~ 262 (401)
T TIGR00656 185 RVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE-EGTLITNSME-NPPLVKGIALRKNVTR 262 (401)
T ss_pred CCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC-CCeEEEeCcc-cCCceEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999999998 8999987532 2246999999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe--CCCEEEEEEcCCCcCc
Q 012808 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKLWS 447 (456)
Q Consensus 398 Isv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist--Se~sIsi~V~~~d~~~ 447 (456)
|++.|.+|.+.+|+++++|++|++++|+++++++ |+.+|+|+|+++|...
T Consensus 263 vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~d~~~ 314 (401)
T TIGR00656 263 VTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLTVDETDADE 314 (401)
T ss_pred EEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHHHHHH
Confidence 9999999999999999999999999999999998 8899999998776543
No 21
>PRK08841 aspartate kinase; Validated
Probab=100.00 E-value=8.2e-61 Score=495.07 Aligned_cols=300 Identities=33% Similarity=0.483 Sum_probs=263.6
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
.|+|+|||||||+|++++++++++|+.. .+.+++||||||+++||.|++.+...
T Consensus 2 ~~~V~KfGGtsv~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~------------------------ 57 (392)
T PRK08841 2 PLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQV------------------------ 57 (392)
T ss_pred CeEEEeECcccCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhh------------------------
Confidence 3799999999999999999999999863 34578999999999999998743210
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
. ...+++.+|.++++||++|+.|++.+|++.|+++.++++++.++++++.+.+
T Consensus 58 ----~-----------------------~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~ 110 (392)
T PRK08841 58 ----D-----------------------SVPTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHND 110 (392)
T ss_pred ----c-----------------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCC
Confidence 0 0124567899999999999999999999999999999999988999888877
Q ss_pred cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (456)
Q Consensus 239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~ 318 (456)
+++...+...+.+ +++.+.|||++||+|.+ ++|+++|||||||||+|+++|.+|+|+++++|||||||||+||+
T Consensus 111 ~~i~~~~~~~i~~-----ll~~~~vpVv~Gf~g~~-~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~ 184 (392)
T PRK08841 111 ATIKHIDTSTITE-----LLEQDQIVIVAGFQGRN-ENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPR 184 (392)
T ss_pred ceechhhHHHHHH-----HHhCCCEEEEeCCcccC-CCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCC
Confidence 7775544433332 35678899999999998 58999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeEEE
Q 012808 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTML 398 (456)
Q Consensus 319 ~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nvalI 398 (456)
++|+|+++++|||+||.||+++|+++|||+|++||+++|||++|+|+++| .+||+|..+. ....|++|+.++|+++|
T Consensus 185 ~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~-~~GT~I~~~~--~~~~i~~i~~~~~~~~i 261 (392)
T PRK08841 185 VVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEV-GEGTLIKGEA--GTQAVCGIALQRDLALI 261 (392)
T ss_pred CCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCC-CCCeEEEecc--CCCcEEEEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999997 5799997543 23479999999999999
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 399 DIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 399 sv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
++.+. .++++|+.|+++||+++++++++.+++|+|+..++..
T Consensus 262 ~v~~~-------~~~~i~~~l~~~~i~v~~i~~~~~~~~~~v~~~~~~~ 303 (392)
T PRK08841 262 EVESE-------SLPSLTKQCQMLGIEVWNVIEEADRAQIVIKQDACAK 303 (392)
T ss_pred Eeccc-------hHHHHHHHHHHcCCCEEEEEecCCcEEEEECHHHHHH
Confidence 99762 4689999999999999999999999999998776544
No 22
>PRK08373 aspartate kinase; Validated
Probab=100.00 E-value=1.8e-60 Score=482.04 Aligned_cols=323 Identities=30% Similarity=0.463 Sum_probs=267.1
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
.|+|+|||||||+| ++++++++|.... +++++||||||+|+||.|+++++.+ +.+.++.+.++|.+++
T Consensus 4 ~m~V~KFGGsSv~~--~~~~v~~ii~~~~~~~~vvVVVSA~~gvTd~L~~l~~~~---------~~~~l~~i~~~h~~~~ 72 (341)
T PRK08373 4 KMIVVKFGGSSVRY--DFEEALELVKYLSEENEVVVVVSALKGVTDKLLKLAETF---------DKEALEEIEEIHEEFA 72 (341)
T ss_pred CCEEEEECCcchHh--HHHHHHHHHHHHhcCCCEEEEecCCchHHHHHHHHHHHH---------hHHHHHHHHHHHHHHH
Confidence 68999999999998 5999999998543 4578999999999999999987643 2457899999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a 239 (456)
++|+.+.. .+.++|+++++.+.-+ .+++.+|+|+|+||++|+.+++.+|+++|+++.+++++++ +.|++.++++
T Consensus 73 ~~L~~~~~---~~~~~l~~~~~~~~~~--~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~a 146 (341)
T PRK08373 73 KRLGIDLE---ILSPYLKKLFNSRPDL--PSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNA 146 (341)
T ss_pred HHhccchh---hHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccce
Confidence 99987653 3445566666553322 3578899999999999999999999999999999999998 8888889988
Q ss_pred ceeec-chHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808 240 DILEA-TYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (456)
Q Consensus 240 ~i~~~-~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~ 318 (456)
++... +...+ +.+.. +++.+.|||++||+| + .+|.++|||||||||+|+++|.+|+|++++||||||||||+||+
T Consensus 147 ~i~~~~s~~~~-~~l~~-~l~~g~VpVv~Gf~g-~-~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~ 222 (341)
T PRK08373 147 FIDIKKSKRNV-KILYE-LLERGRVPVVPGFIG-N-LNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPK 222 (341)
T ss_pred eechhhhhhhH-HHHHH-HHhCCcEEEEeCCcc-C-CCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCC
Confidence 77321 11111 22322 357789999999999 6 58999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeEEE
Q 012808 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTML 398 (456)
Q Consensus 319 ~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nvalI 398 (456)
++|+|+++++|||+||.+|+++|++++||+|++|+++ +||++|+|+++| .+||+|+.... ....++++ +.+|.+.|
T Consensus 223 ~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~Ipi~v~~t~~~-~~GT~I~~~~~-~~~~~~~~-~~~~~~~i 298 (341)
T PRK08373 223 LVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG-KIPIIFGRTRDW-RMGTLVSNESS-GMPILVHK-VGEEHAEI 298 (341)
T ss_pred CCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-CCcEEEecCCCC-CCCcEEecCCC-CCceEEEE-ecCCEEEE
Confidence 9999999999999999999999999999999999999 999999999998 58999987543 23568888 89999999
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCc
Q 012808 399 DIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (456)
Q Consensus 399 sv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~ 445 (456)
++.+. ...+|+- .+.-.+..+.+.|+.+++
T Consensus 299 ~~~~~--~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 328 (341)
T PRK08373 299 LVVGV--EEEIGYP---------------VYEEGEFWFKIKVPKEEL 328 (341)
T ss_pred EEecc--CCCCCCC---------------ceecCCceEEEecCHHHH
Confidence 99973 2334321 234556666666666554
No 23
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=100.00 E-value=7.6e-58 Score=452.40 Aligned_cols=279 Identities=28% Similarity=0.401 Sum_probs=223.9
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcCCC--CCcEEEEcCCCcCchHHHHh---hHHHHhcCC--CccchHHHHHHHHHHH
Q 012808 83 CVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLA---GEKAVSCGV--TNISCIDELSFVKDLH 155 (456)
Q Consensus 83 ~V~KFGGsSv~s~~~~~~va~iI~~~~~--~~~vvVVSA~g~vTd~Ll~~---~~~~~~~~~--~~~~~~~~l~~i~~~~ 155 (456)
.|+|||||||++.+.+.. ++|..... .++|+||||++|+||+|++. ++..+...+ .+..|.+.|+.+.++|
T Consensus 2 ~V~K~GGTSms~~~~~~d--~i~~~~~~~~~~rv~VVSA~~gvT~~Lle~k~t~~~gv~~~~~~~~~~~~~al~~~~~~~ 79 (304)
T cd04248 2 TVEKIGGTSMSAFGAVLD--NIILKPDSDLYGRVFVVSAYSGVTNALLEHKKTGAPGIYQHFVDADEAWREALSALKQAM 79 (304)
T ss_pred ceeeecCcccccHHHHhh--hHhcCCcccCccEEEEEECCccchHHHHHhhhcCCcchhHHHhcCchHHHHHHHHHHHHH
Confidence 699999999999988888 66663221 25899999999999999973 111111111 2234677899999998
Q ss_pred HHHHHHhCCCH-------HHHHHH-------HHHHHHHH-HHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCce
Q 012808 156 HRTVDELGIDR-------SIIATH-------LEELEQLL-KGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKA 220 (456)
Q Consensus 156 ~~~~~~l~~~~-------~~i~~~-------~~~L~~ll-~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a 220 (456)
..+.++|..+. .++.+. +.++..++ .|+..+++++++.+|+|+|+||++|+.+++.+|++.|++|
T Consensus 80 ~~~~~~l~~~~~~~~~a~~~i~~r~~~~~~~l~~~~~~~~~g~~~l~e~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A 159 (304)
T cd04248 80 LKINEAFADIGLDVEQADAFIGARIQDARACLHDLARLCSSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVNA 159 (304)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhCCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCe
Confidence 88877776431 234444 34444444 5778889999999999999999999999999999999999
Q ss_pred EEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCC
Q 012808 221 RQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGL 300 (456)
Q Consensus 221 ~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A 300 (456)
.++|...+ ...+.+. ....+.+.+.. +...+.|||++||.+ + .+|+++|||||||||||++||.+|+|
T Consensus 160 ~~vD~~~~--~~~~~~t-------~~~~i~~~~~~-~~~~~~v~IvtGF~~-~-~~G~itTLGRGGSDyTAs~iAa~l~A 227 (304)
T cd04248 160 RFVDLSGW--RDSGDMT-------LDERISEAFRD-IDPRDELPIVTGYAK-C-AEGLMREFDRGYSEMTFSRIAVLTGA 227 (304)
T ss_pred EEECcccc--cccCCCC-------cHHHHHHHHHh-hccCCcEEEeCCccC-C-CCCCEEEcCCCcHHHHHHHHHHHcCC
Confidence 99987653 2112111 12344444432 223567999999954 5 48999999999999999999999999
Q ss_pred ceEEEeecCCccccCCCCCC--CCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808 301 QEIQVWKDVDGVLTCDPNIH--PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (456)
Q Consensus 301 ~~l~i~TDV~GV~taDP~~v--~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (456)
++++|||||+ |||+|||+| |+|++|++|||+||.||+++|+++|||+|++|++++||||+|+|+|+|+++||+|+
T Consensus 228 ~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~Vkntf~P~~~GTlIt 304 (304)
T cd04248 228 SEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPDHPGTLIT 304 (304)
T ss_pred CEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCeEEEecCCCCCCCCceeC
Confidence 9999999996 999999999 68999999999999999999999999999999999999999999999999999995
No 24
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=100.00 E-value=1.5e-57 Score=458.50 Aligned_cols=288 Identities=31% Similarity=0.465 Sum_probs=243.3
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (456)
|+|+|||||||+++ +++++++|.... +.+++||||||+|+||+|+++++.+ ..+.++.++++|.++++
T Consensus 1 m~V~KFGGsSv~~~--~~~v~~ii~~~~~~~~~vVVVSA~~gvTd~L~~~~~~~---------~~~~l~~i~~~h~~~~~ 69 (327)
T TIGR02078 1 MIVVKFGGSSVRYA--FEEALELVKSLSEEKRVIVVVSALKGITDCLIRYANTF---------DKSAALEIEEIYEEFAK 69 (327)
T ss_pred CEEEEECCcchHHH--HHHHHHHHHHHhcCCCEEEEeCCCcchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 68999999999986 999999998643 4578999999999999999976421 13568899999999999
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcc
Q 012808 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD 240 (456)
Q Consensus 161 ~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~ 240 (456)
+|+.+...+.+.++++.+. .. -.++..+|+|+++||++|+.|++. |+++.+++++++ ++|++.|+++.
T Consensus 70 ~L~~~~~~~~~~l~~~~~~---~~---l~~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~-i~t~~~~~~a~ 137 (327)
T TIGR02078 70 ELGVDLNILSPYLKELFNP---PD---LPKEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDI-FFAKGDFGNAF 137 (327)
T ss_pred HhccchhhhHHHHHHHHhh---hc---cCChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHH-hccCCcCCcee
Confidence 9998665555555555443 22 235678999999999999999986 799999999998 88889999988
Q ss_pred eee-cchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808 241 ILE-ATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (456)
Q Consensus 241 i~~-~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (456)
++. .+..++. .+.. +++.+.|||++||+| + .+|.++|+|||||||+|+++|.+|+|+++++|||||||||+||++
T Consensus 138 ~~~~~~~~~~~-~l~~-~l~~g~IpVv~Gf~~-~-~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~ 213 (327)
T TIGR02078 138 IDIKKSKRNAK-ILYE-VLESGKIPVIPGFYG-N-LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKL 213 (327)
T ss_pred echhhhHhhHH-HHHH-HHhCCcEEEEeCCcc-C-CCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCc
Confidence 753 2222222 2222 356789999999999 6 589999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecC-eEEE
Q 012808 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRN-VTML 398 (456)
Q Consensus 320 v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~n-valI 398 (456)
+|+|++|+++||+||.+++++|++++||+|++|++++|||++|+|+++|+ +||+|+...+ . +..|++++. ++.|
T Consensus 214 v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~~-~GT~I~~~~~--~--~~~i~~~~~~i~~v 288 (327)
T TIGR02078 214 VPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDWR-MGTLISNRSS--G--MPLMVYKDGELLVV 288 (327)
T ss_pred CCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCcC-CCcEEecCCC--C--CcEEEEccCcEEEE
Confidence 99999999999999999999999999999999999999999999999997 7999986542 2 345888888 8888
Q ss_pred EEE
Q 012808 399 DIV 401 (456)
Q Consensus 399 sv~ 401 (456)
++.
T Consensus 289 ~~~ 291 (327)
T TIGR02078 289 NVR 291 (327)
T ss_pred EEe
Confidence 873
No 25
>PRK08210 aspartate kinase I; Reviewed
Probab=100.00 E-value=2.2e-56 Score=465.05 Aligned_cols=311 Identities=33% Similarity=0.564 Sum_probs=267.0
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCc-----CchHHHHhhHHHHhcCCCccchHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGK-----TTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~-----vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~ 153 (456)
.++|+|||||++.+++.++++++.|... .+.+++|||||||+ +|+.|++.+...
T Consensus 2 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~------------------- 62 (403)
T PRK08210 2 KIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEE------------------- 62 (403)
T ss_pred CeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHh-------------------
Confidence 3689999999999999999999998853 24578999999976 588776533210
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEee
Q 012808 154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (456)
Q Consensus 154 ~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~ 233 (456)
....+++.+|.++++||.+|+.+++++|+++|+++.++++.+.+++|+
T Consensus 63 --------------------------------~~~~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~ 110 (403)
T PRK08210 63 --------------------------------FSEISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITD 110 (403)
T ss_pred --------------------------------ccCCChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEcc
Confidence 012356677889999999999999999999999999999999889999
Q ss_pred cCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (456)
Q Consensus 234 ~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (456)
++++++++...+...+.+ +++.+.|||++||+|.+ .+|+++|+||||||++|+++|.+|+|++++|||||||||
T Consensus 111 ~~~~~~~v~~~~~~~l~~-----~l~~~~vpVi~G~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~ 184 (403)
T PRK08210 111 DNFTNAKIIEVNPDRILE-----ALEEGDVVVVAGFQGVT-ENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIM 184 (403)
T ss_pred CCCCceeeehhhHHHHHH-----HHhcCCEEEeeCeeecC-CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 988877765544433332 35678999999999988 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC------Cccceee
Q 012808 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD------MSKAVLT 387 (456)
Q Consensus 314 taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~------~~~~~i~ 387 (456)
++||+++|++++|++|||+||.+|+++|++++||+|++||++++||++|+|++++ .+||+|.+..+ +....|+
T Consensus 185 ~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~-~~gT~I~~~~~~~~~~~~~~~~v~ 263 (403)
T PRK08210 185 TADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSD-SPGTLITSLGDAKGGIDVEERLIT 263 (403)
T ss_pred cCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEEEecCCC-cCCcEEEecCccccccccccCceE
Confidence 9999999999999999999999999999999999999999999999999999985 46999987532 1345799
Q ss_pred EEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc-HHHH
Q 012808 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS-RELI 451 (456)
Q Consensus 388 ~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~-~~l~ 451 (456)
+|+.++|+++|+|.+..+ .+|+++++|++|+++||||++++++..+++|+++.++... .+++
T Consensus 264 ~It~~~~i~~isv~~~~~--~~g~la~If~~L~~~~I~i~~i~~~~~~is~~v~~~~~~~a~~~l 326 (403)
T PRK08210 264 GIAHVSNVTQIKVKAKEN--AYDLQQEVFKALAEAGISVDFINIFPTEVVFTVSDEDSEKAKEIL 326 (403)
T ss_pred EEEEcCCcEEEEEecCCC--cchHHHHHHHHHHHcCCeEEEEEecCceEEEEEcHHHHHHHHHHH
Confidence 999999999999987654 4999999999999999999999988889999999876544 3443
No 26
>PRK06635 aspartate kinase; Reviewed
Probab=100.00 E-value=2.7e-56 Score=464.38 Aligned_cols=306 Identities=34% Similarity=0.567 Sum_probs=270.5
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
+++|+|||||+|.+++.++++++.|.... +.+++|||||++++||+|++..+...
T Consensus 2 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~----------------------- 58 (404)
T PRK06635 2 ALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVS----------------------- 58 (404)
T ss_pred CeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhc-----------------------
Confidence 46899999999999999999999998642 45789999999999999987532100
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
...++..+|.++++||++|+.+++.+|+++|+++.++++.++++++++.|++
T Consensus 59 ----------------------------~~~~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~ 110 (404)
T PRK06635 59 ----------------------------PLPDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGK 110 (404)
T ss_pred ----------------------------cCCCHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCc
Confidence 0114567789999999999999999999999999999999998899888888
Q ss_pred cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (456)
Q Consensus 239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~ 318 (456)
+++...+...+.+ +++.+.|||++||+|.+ .+|.++++||||||++|+++|.+|+|+++++||||||||++||+
T Consensus 111 ~~~~~~~~~~l~~-----~l~~~~ipVi~g~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~ 184 (404)
T PRK06635 111 ARITDIDPSRIRE-----ALDEGDVVVVAGFQGVD-EDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPR 184 (404)
T ss_pred eEeeecCHHHHHH-----HHhCCCEEEecCccEeC-CCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCC
Confidence 8776555544443 24678999999999998 58999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC--CccceeeEEEEecCeE
Q 012808 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--MSKAVLTSIVLKRNVT 396 (456)
Q Consensus 319 ~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--~~~~~i~~I~~~~nva 396 (456)
++|+++++++++|+|+.+|+++|++++||+|++++++++||++|+|++++ .+||+|..... +.+..+++|+..++++
T Consensus 185 ~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~~-~~gT~i~~~~~~~~~~~~i~~I~~~~~v~ 263 (404)
T PRK06635 185 IVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSD-NPGTLITGEEEEIMEQPVVTGIAFDKDEA 263 (404)
T ss_pred CCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCCC-CCCCEEeeCCccccccCceEEEEecCCeE
Confidence 99999999999999999999999999999999999999999999999987 67999987643 2345799999999999
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCcC
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLW 446 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~~ 446 (456)
+|++.| |.+.+|+++++|++|+++||+|+++++| +.+|+|+|++++..
T Consensus 264 ~Isv~g--~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~ 316 (404)
T PRK06635 264 KVTVVG--VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLE 316 (404)
T ss_pred EEEECC--CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHH
Confidence 999998 8899999999999999999999999876 48899999887654
No 27
>PRK07431 aspartate kinase; Provisional
Probab=100.00 E-value=3.9e-55 Score=475.43 Aligned_cols=308 Identities=32% Similarity=0.512 Sum_probs=267.8
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
.|+|+|||||||+|++.++++++.|+.. .+.+++|||||+|++||+|++.+...
T Consensus 2 ~~iViKfGGss~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~------------------------ 57 (587)
T PRK07431 2 ALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEI------------------------ 57 (587)
T ss_pred CeEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHh------------------------
Confidence 3789999999999999999999999864 24578999999999999998643210
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
..+.+....|+++++||++|+.+++.+|+++|++++++++.++++++++.++.
T Consensus 58 ---------------------------t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~ 110 (587)
T PRK07431 58 ---------------------------SSNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGR 110 (587)
T ss_pred ---------------------------ccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCc
Confidence 11235567799999999999999999999999999999999998888888887
Q ss_pred cceeecchHHHHHHHhhccccCCceEEEcCCCcCCC-CCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW-RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (456)
Q Consensus 239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~-~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (456)
+++...+.+.+.+ +++.+.|||++||+|.+. .+|+++|+||||||++|+++|.+|+|+++++||||||||++||
T Consensus 111 ~~i~~~~~~~l~~-----~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP 185 (587)
T PRK07431 111 ARILEIKTDRIQR-----HLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDP 185 (587)
T ss_pred eeeeeccHHHHHH-----HHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCC
Confidence 7776655544443 346789999999998752 2388999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCc--------cceeeEE
Q 012808 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS--------KAVLTSI 389 (456)
Q Consensus 318 ~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~--------~~~i~~I 389 (456)
+++|+|++|++|+|+||.+|+++|+++|||+|++|++++|||++|+|++. +.+||+|.+..+.. ...++++
T Consensus 186 ~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~-~~~GT~i~~~~~~~~~~~~~~~~~~i~gi 264 (587)
T PRK07431 186 RLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS-DAPGTLVTSPPPRPRSLGGLELGKPVDGV 264 (587)
T ss_pred CCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCCC-CCCCeEEEeCCcccccccchhcccccceE
Confidence 99999999999999999999999999999999999999999999999994 56899998764321 3468999
Q ss_pred EEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCcCc
Q 012808 390 VLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWS 447 (456)
Q Consensus 390 ~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~~~ 447 (456)
++.+|++++++. +|.+.+|+++++|+.|+++||||+||+++ ..+|||+++.+++..
T Consensus 265 ~~~~~~a~itl~--~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~~~ 325 (587)
T PRK07431 265 ELDEDQAKVALL--RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENELKK 325 (587)
T ss_pred EEecCceEEEEe--cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHHHH
Confidence 999999999997 68889999999999999999999999753 388999999887643
No 28
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=100.00 E-value=1.9e-47 Score=371.57 Aligned_cols=237 Identities=38% Similarity=0.607 Sum_probs=209.9
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
++|+||||+++.|++.++++++.|.... +.+++||+||+++.|++|++......
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~------------------------ 56 (239)
T cd04261 1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEIS------------------------ 56 (239)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhc------------------------
Confidence 4799999999999999999999998643 45789999999999999987532110
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a 239 (456)
...+.+.+|.++++||++|+.++++.|+++|++++++++.++++++.++|+.+
T Consensus 57 ---------------------------~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~ 109 (239)
T cd04261 57 ---------------------------PRPPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKA 109 (239)
T ss_pred ---------------------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcc
Confidence 12245677889999999999999999999999999999999888898888777
Q ss_pred ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (456)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (456)
++...+...+.+ +++.+.|||++||+|.+ ++|.++++|||++|++|+.+|.+|+|+++++||||||||++||++
T Consensus 110 ~i~~~~~~~l~~-----ll~~~~ipVi~G~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~ 183 (239)
T cd04261 110 RIIDIDPDRIRE-----LLEEGDVVIVAGFQGIN-EDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRI 183 (239)
T ss_pred eechhhHHHHHH-----HHHcCCeEEEcCccccC-CCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCC
Confidence 765544433332 35678999999999998 589999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (456)
Q Consensus 320 v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (456)
+|+++++++|+|+|+.+|+++|++++||+|++|++++|||++|.|+++|+ +||+|+
T Consensus 184 ~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~-~gt~i~ 239 (239)
T cd04261 184 VPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE-PGTLIT 239 (239)
T ss_pred CCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC-CCcEeC
Confidence 99999999999999999999999999999999999999999999999999 999995
No 29
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=100.00 E-value=1.4e-47 Score=369.84 Aligned_cols=225 Identities=49% Similarity=0.858 Sum_probs=197.3
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcC-CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~-~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (456)
|+|+||||||+.+++.++++++.|.+. .+.++|||+||++++|+.|++.+
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~t~~l~~~~----------------------------- 51 (227)
T cd04234 1 MVVQKFGGTSVASAERIKRVADIIKAYEKGNRVVVVVSAMGGVTDLLIELA----------------------------- 51 (227)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhhcCCCEEEEEcCCCcccHHHHHHH-----------------------------
Confidence 689999999999999999999999875 24578999999999999886520
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcc
Q 012808 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD 240 (456)
Q Consensus 161 ~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~ 240 (456)
.++++||.+|+.+++++|+++|+++.++++.++++.+.+.+...+
T Consensus 52 -----------------------------------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~ 96 (227)
T cd04234 52 -----------------------------------LLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDNHGAAR 96 (227)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhh
Confidence 578899999999999999999999999999998544443322223
Q ss_pred eeecchHHHHHHHhhccccC-CceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808 241 ILEATYPAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (456)
Q Consensus 241 i~~~~~~~i~~~l~~~ll~~-~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (456)
+...+...+.+ +++. +.|||++||+|.+ ++|.++++||||+|++|+++|.+|+|+++++|||||||||+||+.
T Consensus 97 ~~~~~~~~l~~-----~l~~~~~vpVv~g~i~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~ 170 (227)
T cd04234 97 IIEISYERLKE-----LLAEIGKVPVVTGFIGRN-EDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170 (227)
T ss_pred HHHHHHHHHHH-----HHhhCCCEEEecCceecC-CCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCC
Confidence 33333333322 3566 8999999999998 589999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (456)
Q Consensus 320 v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (456)
+|++++|++++|+|+.+|+++|+++|||+|++++++++||++|.|+++|+.+||+|+
T Consensus 171 ~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~~~gT~I~ 227 (227)
T cd04234 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT 227 (227)
T ss_pred CCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCCCCCCEeC
Confidence 999999999999999999999999999999999999999999999999999999984
No 30
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=100.00 E-value=4.9e-47 Score=368.63 Aligned_cols=237 Identities=39% Similarity=0.627 Sum_probs=209.3
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
|+|+||||+++.|++.++++++.|.... +.++++|+||+++.+++|++......
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~------------------------ 56 (239)
T cd04246 1 IIVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVS------------------------ 56 (239)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhc------------------------
Confidence 6899999999999999999999998653 45789999999999999987432100
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a 239 (456)
...+...+|.++++||.+|+.++++.|+++|+++.++++.+.++++.+.|+++
T Consensus 57 ---------------------------~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~ 109 (239)
T cd04246 57 ---------------------------PRPSPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNA 109 (239)
T ss_pred ---------------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCce
Confidence 01245667889999999999999999999999999999999878888888777
Q ss_pred ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (456)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (456)
++...+...+.+ +++++.|||++||+|.+ ++|.++++|||++|++|+.+|.+|+|+++++||||||||++||+.
T Consensus 110 ~~~~~~~~~l~~-----ll~~g~ipVi~g~~~~~-~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~ 183 (239)
T cd04246 110 RIIDIDPKRILE-----ALEEGDVVVVAGFQGVN-EDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRI 183 (239)
T ss_pred eechhhHHHHHH-----HHhcCCEEEEcCccccC-CCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCC
Confidence 765544443332 35678999999999988 589999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (456)
Q Consensus 320 v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (456)
+|+++++++|+|+|+.+|+++|++++||+|++|++++|||++|.|+++|+ +||+|+
T Consensus 184 ~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~-~gt~i~ 239 (239)
T cd04246 184 VPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN-PGTLIT 239 (239)
T ss_pred CCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC-CCcEeC
Confidence 99999999999999999999999999999999999999999999999999 999995
No 31
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=100.00 E-value=1.8e-46 Score=365.95 Aligned_cols=237 Identities=34% Similarity=0.611 Sum_probs=205.9
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcC-----chHHHHhhHHHHhcCCCccchHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKT-----TNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~v-----Td~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (456)
++|+|||||++.|++.++++++.|.... +.+++||+||+|+. |+.|++...
T Consensus 1 ~~ViK~GGs~l~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~---------------------- 58 (244)
T cd04260 1 IIVQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVY---------------------- 58 (244)
T ss_pred CEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHH----------------------
Confidence 3799999999999999999999998653 34689999998773 554443210
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (456)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~ 234 (456)
.. + ...++..+|.++++||.+++.+++++|+++|+++.++++.+.++++.+
T Consensus 59 ------~~-------------------~----~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~ 109 (244)
T cd04260 59 ------AE-------------------N----SDISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDD 109 (244)
T ss_pred ------hh-------------------c----CCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecC
Confidence 00 0 123566789999999999999999999999999999999999899999
Q ss_pred CCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (456)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (456)
.+++.++...+...+.+ +++.+.|||++||+|.+ .+|++++++|||+|++|+.+|.+|+|+++++||||||||+
T Consensus 110 ~~~~~~v~~~~~~~l~~-----ll~~g~VPVv~g~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~ 183 (244)
T cd04260 110 NYSNAKIIKVNPKKILS-----ALKEGDVVVVAGFQGVT-EDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMT 183 (244)
T ss_pred CCCceeeeccCHHHHHH-----HHhCCCEEEecCCcccC-CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCc
Confidence 88777665555544432 35678999999999998 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (456)
Q Consensus 315 aDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (456)
+||+.+|++++|++|+|+|+.+|+++|++++||+|++++++++|||+|+|+++|+ +||+|+
T Consensus 184 ~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~~-~gt~i~ 244 (244)
T cd04260 184 ADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN-PGTLIT 244 (244)
T ss_pred CCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC-CCCEeC
Confidence 9999999999999999999999999999999999999999999999999999998 999995
No 32
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=100.00 E-value=7.6e-37 Score=297.09 Aligned_cols=237 Identities=40% Similarity=0.602 Sum_probs=198.0
Q ss_pred EEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (456)
Q Consensus 84 V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (456)
|+||||+++.+++.++++++.|+.. .+.+.|+|+||++..++.|.+.....
T Consensus 1 ViKiGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~--------------------------- 53 (248)
T cd02115 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL--------------------------- 53 (248)
T ss_pred CEeeCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhh---------------------------
Confidence 7899999999999999999999974 24578999999999999887643211
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC-cc
Q 012808 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN-AD 240 (456)
Q Consensus 162 l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~-a~ 240 (456)
.+.++ ...+....+.++++|+.+++.++.++|+++|+++.++++.++++.+ ++++. .+
T Consensus 54 ----------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~-~~~~~~g~ 112 (248)
T cd02115 54 ----------------GYARG----LRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFAS-PNQGHVGK 112 (248)
T ss_pred ----------------hhhhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEe-CCCCCccc
Confidence 00111 1346777899999999999999999999999999999999885544 44444 34
Q ss_pred eeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCC
Q 012808 241 ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320 (456)
Q Consensus 241 i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v 320 (456)
+...+.+.+.+. ++.+.|||++||.+.+. + +..+++|++||++|+.+|.+|+|++++|||||+|||++||+++
T Consensus 113 ~~~~~~~~l~~~-----l~~~~ipVv~g~~~~~~-~-~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~ 185 (248)
T cd02115 113 ITKVSTDRLKSL-----LENGILPILSGFGGTDE-K-ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKV 185 (248)
T ss_pred ceeeCHHHHHHH-----HhCCcEEEecCeEeccC-C-ceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcC
Confidence 444455444433 46789999999988762 4 6788999999999999999999999999999999999999999
Q ss_pred CCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCC--------CCCCceEE
Q 012808 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN--------PNAPGTLI 375 (456)
Q Consensus 321 ~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~--------p~~~GT~I 375 (456)
|++++|++|+|+|+.+|+++|+.++||+++.++.++++|++|.|+++ ++.+||+|
T Consensus 186 ~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~GT~I 248 (248)
T cd02115 186 PDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGALALFTPDGGGTLI 248 (248)
T ss_pred CcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999988 45667764
No 33
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=1.3e-31 Score=264.53 Aligned_cols=226 Identities=22% Similarity=0.303 Sum_probs=178.0
Q ss_pred cceEEEEeCccccC------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808 80 QLTCVMKFGGSSLA------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (456)
Q Consensus 80 ~~~~V~KFGGsSv~------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i 151 (456)
..++|+||||||+. +.++++++++.|.... +.++|+|+||+++.+..++....
T Consensus 9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~------------------- 69 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDK------------------- 69 (266)
T ss_pred CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeecccc-------------------
Confidence 35799999999999 7899999999998642 34567778998888876654210
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (456)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii 231 (456)
. ......++.+.+.||.++..++..+|+++|+++ +++ ++
T Consensus 70 ------------~-----------------------~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-----~q~-ll 108 (266)
T PRK12314 70 ------------R-----------------------PTSLAEKQALAAVGQPELMSLYSKFFAEYGIVV-----AQI-LL 108 (266)
T ss_pred ------------C-----------------------CCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEE-EE
Confidence 0 001234588999999999999999999999975 566 88
Q ss_pred eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeecc----CCCChhHHHHHHHHcCCceEEEee
Q 012808 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG----RGGSDLTATTIGKALGLQEIQVWK 307 (456)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlg----RGGSD~tAa~lA~~L~A~~l~i~T 307 (456)
|.++|.+.+.. .+..+.+. .+++.|.|||+.+ |+.+++.+ +|++|++|++||.+|+|+.++|||
T Consensus 109 T~~~~~~~~~~----~~~~~~l~-~ll~~g~IPVv~~-------nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilT 176 (266)
T PRK12314 109 TRDDFDSPKSR----ANVKNTFE-SLLELGILPIVNE-------NDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILS 176 (266)
T ss_pred ecccccchHHH----HHHHHHHH-HHHHCCCEEEEcC-------CCCeeeccccceecchHHHHHHHHHHhCCCEEEEEe
Confidence 88888766542 22333333 3467899999954 45566666 899999999999999999999999
Q ss_pred cCCccccCCCCCCCCCccccccCH--HHHHHHHHc-------CCCcchHHHHHHHHhCCCCEEEecCCCCC---------
Q 012808 308 DVDGVLTCDPNIHPHAKPVPYLTF--DEAAELAYF-------GAQVLHPQSMRPAREGDIPVRVKNSYNPN--------- 369 (456)
Q Consensus 308 DV~GV~taDP~~v~~Ak~i~~ls~--~Ea~eLa~~-------Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~--------- 369 (456)
||||||++||+.+|+|++|+.+++ +|..+++.. |..+.|++++..+.++|+|++|.|+++|+
T Consensus 177 DVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~ 256 (266)
T PRK12314 177 DIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGE 256 (266)
T ss_pred CCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCC
Confidence 999999999999999999999987 666666532 34567788999999999999999988774
Q ss_pred CCceEEee
Q 012808 370 APGTLIRR 377 (456)
Q Consensus 370 ~~GT~I~~ 377 (456)
..||+|.+
T Consensus 257 ~~GT~i~~ 264 (266)
T PRK12314 257 SIGTLFAP 264 (266)
T ss_pred CCceEEcc
Confidence 46898864
No 34
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.98 E-value=5.1e-33 Score=269.25 Aligned_cols=233 Identities=34% Similarity=0.447 Sum_probs=178.7
Q ss_pred ceEEEEeCccccCCH--HHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASA--ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~--~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (456)
+++|+|||||++.++ + ++++++.|.... ...++||||++|+.+|.+++....... ..+ ..+|..
T Consensus 1 k~~ViK~GGs~l~~~~~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~--~~~----------~~r~~~ 67 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKDEE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPK--FVD----------GSRVTD 67 (242)
T ss_dssp SEEEEEE-HHGHSSHSHH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTS--EET----------HHCHBH
T ss_pred CeEEEEECchhhCCchHH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCcc--cch----------hhhhhh
Confidence 578999999999998 7 999999998542 346679999999999999875321100 000 011111
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC
Q 012808 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (456)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~ 237 (456)
....+.. -.....+|.+ ....+.+.+.|+.+++.++...+.+.|+.+...++..
T Consensus 68 ~~~~~~~----~~~~~~~l~~------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 121 (242)
T PF00696_consen 68 IETGLII----TMAAAAELNR------------DALLDEIVSAGERLGAHAVGLSLSDGGISAAKRDARE---------- 121 (242)
T ss_dssp HHHHHHH----HHHHHHHHHH------------HHHHHHHHHHHHHCTHHEEEHHHTGGTEEEEEEESSE----------
T ss_pred hhhhHHH----HHHHhhcccc------------chhHHHHHHhhhhhhHHHHhhhhhcccchhhhhhhhh----------
Confidence 1110000 0000111111 4677889999999999999999998888777655431
Q ss_pred CcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (456)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (456)
.+...+.+ +++++.|||++||.+.+ .+|++++++++++|++|+.||.+|+|++++|||||||||++||
T Consensus 122 ------~~~~~i~~-----~l~~~~ipVv~g~~~~~-~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP 189 (242)
T PF00696_consen 122 ------VDKEAIRE-----LLEQGIIPVVSGFAGID-DDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADP 189 (242)
T ss_dssp ------EHHHHHHH-----HHHTTSEEEEESEEEEE-TTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSST
T ss_pred ------hHHHHHHH-----HHHCCCEEEEeCCcccC-CCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCC
Confidence 12233333 24568999999999888 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHH------HcCCCcchHHHHHHHHhCCCCEEEec
Q 012808 318 NIHPHAKPVPYLTFDEAAELA------YFGAQVLHPQSMRPAREGDIPVRVKN 364 (456)
Q Consensus 318 ~~v~~Ak~i~~ls~~Ea~eLa------~~Ga~vlhp~a~~~a~~~~Ipv~I~n 364 (456)
+.+|+++++++|+|+|+.+|+ ++|++++||.|+++++++++|++|.|
T Consensus 190 ~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 190 RIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp TTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 999999999999999999999 89999999999999999999999986
No 35
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.97 E-value=5.5e-31 Score=258.00 Aligned_cols=221 Identities=24% Similarity=0.394 Sum_probs=173.3
Q ss_pred EEEEeCccccCCHH------HHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHH
Q 012808 83 CVMKFGGSSLASAE------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (456)
Q Consensus 83 ~V~KFGGsSv~s~~------~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (456)
+|+|||||++.+.+ .++++++.|++.. +.+.|+|+||+++.+...++
T Consensus 2 iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~------------------------- 56 (251)
T cd04242 2 IVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLG------------------------- 56 (251)
T ss_pred EEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhhc-------------------------
Confidence 79999999999876 9999999998643 34567788887776632111
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (456)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~ 234 (456)
... +......++.+++.||..+..+++.+|+++|+++. ++ ++|++
T Consensus 57 ---------~~~--------------------~~~~~~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~-----q~-l~t~~ 101 (251)
T cd04242 57 ---------LEK--------------------RPKTLPEKQALAAVGQSLLMALYEQLFAQYGIKVA-----QI-LLTRD 101 (251)
T ss_pred ---------cCc--------------------CCCchhHHHHHHHHhHHHHHHHHHHHHHHcCCeEE-----EE-EEehh
Confidence 000 00011345789999999999999999999999963 44 67777
Q ss_pred CCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceee--ccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (456)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vtt--lgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (456)
+|.++.. +....+. ...+++.+.|||+.+ +|.+++ +++|++|++|+.+|.+|+|++++||||||||
T Consensus 102 ~~~~~~~----~~~~~~~-i~~ll~~g~iPVv~~-------~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGv 169 (251)
T cd04242 102 DFEDRKR----YLNARNT-LETLLELGVIPIINE-------NDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGL 169 (251)
T ss_pred HhcchHH----HHHHHHH-HHHHHHCCCEEEEcC-------CCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEE
Confidence 7765532 1222222 334567889999954 345666 8999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccC--HHHHHHHH-----HcCCCcchH--HHHHHHHhCCCCEEEecCCCCC---------CCceE
Q 012808 313 LTCDPNIHPHAKPVPYLT--FDEAAELA-----YFGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------APGTL 374 (456)
Q Consensus 313 ~taDP~~v~~Ak~i~~ls--~~Ea~eLa-----~~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~ 374 (456)
|++||+.+|++++|++++ ++|+.+++ .+|+.+|+| +++..+.++|+|++|.|++.|+ ..||+
T Consensus 170 y~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~ 249 (251)
T cd04242 170 YDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTL 249 (251)
T ss_pred EeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCCCeE
Confidence 999999999999999999 99999986 678899999 6899999999999999998774 35776
Q ss_pred E
Q 012808 375 I 375 (456)
Q Consensus 375 I 375 (456)
|
T Consensus 250 i 250 (251)
T cd04242 250 F 250 (251)
T ss_pred e
Confidence 6
No 36
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.97 E-value=1.1e-29 Score=248.00 Aligned_cols=216 Identities=25% Similarity=0.343 Sum_probs=167.0
Q ss_pred ceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808 81 LTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (456)
Q Consensus 81 ~~~V~KFGGsSv~s-------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i 151 (456)
..+|+||||+++.+ ++.++++++.|+... +.+++||||| | |.+.. +
T Consensus 5 ~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGg-G---n~~rg--~------------------- 59 (247)
T PRK14557 5 KRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-G---NIFRG--H------------------- 59 (247)
T ss_pred cEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECC-c---HHHHH--H-------------------
Confidence 56899999999988 789999999998642 3467888887 3 43431 0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (456)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii 231 (456)
.++.++. +....|+++++||++|+.+++.+|++. ++.+.+++
T Consensus 60 ------~a~~~~~-------------------------~~~~~D~ig~~g~~lna~ll~~~l~~~-------~~~~~~i~ 101 (247)
T PRK14557 60 ------LAEEWGI-------------------------DRVEADNIGTLGTIINSLMLRGVLTSK-------TNKEVRVM 101 (247)
T ss_pred ------HHHhcCC-------------------------ChHHHHHHHHHHHHHHHHHHHHHHHhh-------hCCceeEE
Confidence 1111221 234569999999999999999999884 34455677
Q ss_pred eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEee-cCC
Q 012808 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DVD 310 (456)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~T-DV~ 310 (456)
|+..+.... .. + ...++.+. +++|.|||++||+|.. .++ +|++|+++|..++|+.+++|| |||
T Consensus 102 t~~~~~~~~-~~--~--~~~~~~~~-l~~g~VvV~~G~~g~~----~~s------tD~lAallA~~l~Ad~li~~ttdVd 165 (247)
T PRK14557 102 TSIPFNAVA-EP--Y--IRLRAVHH-LDNGYIVIFGGGNGQP----FVT------TDYPSVQRAIEMNSDAILVAKQGVD 165 (247)
T ss_pred ecccccccc-ch--h--hHHHHHHH-HhCCCEEEEECCcCCC----ccC------hHHHHHHHHHHhCCCEEEEecCCcC
Confidence 777665321 11 1 11223332 4677899999998853 344 899999999999999999995 999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEeec
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRS 378 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (456)
||||+||+.+|+|++|++++|+|+. +.+.++|||+|+++|++++||++|.|+.+|+ ..||+|.+.
T Consensus 166 GvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~ 239 (247)
T PRK14557 166 GVFTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 239 (247)
T ss_pred EeECCCCCCCCCCEEeeEEChhhhc---ccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecC
Confidence 9999999999999999999999884 4678899999999999999999999998775 479999754
No 37
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.97 E-value=6.4e-30 Score=247.14 Aligned_cols=204 Identities=23% Similarity=0.326 Sum_probs=158.8
Q ss_pred EEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHH
Q 012808 83 CVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (456)
Q Consensus 83 ~V~KFGGsSv~s------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (456)
+|+|||||++.+ .+.++++++.|++.. +.+.++|+|| |...+....
T Consensus 2 iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~gg-G~~a~~~~~------------------------- 55 (229)
T cd04239 2 IVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGG-GNIARGYIA------------------------- 55 (229)
T ss_pred EEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-ChHHhhHHH-------------------------
Confidence 699999999988 789999999998642 2355666665 433332110
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (456)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~ 234 (456)
... ..++...|.+.+.|+++|+.+|+.+|+++|+++..+++.+++.++.
T Consensus 56 -----~~~-------------------------~~~~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~- 104 (229)
T cd04239 56 -----AAR-------------------------GMPRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAE- 104 (229)
T ss_pred -----hhc-------------------------CCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhc-
Confidence 000 0122345788889999999999999999999999988876532211
Q ss_pred CCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (456)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (456)
. .+... +. .+++.+.|||++||.|... +.+|++|+.+|.+|+|+++++||||||||+
T Consensus 105 ~--------~~~~~----l~-~~l~~g~ipVi~g~~g~~~----------~~sD~~A~~lA~~l~a~~li~~tdVdGvy~ 161 (229)
T cd04239 105 P--------YIRRR----AI-RHLEKGRIVIFGGGTGNPG----------FTTDTAAALRAEEIGADVLLKATNVDGVYD 161 (229)
T ss_pred c--------ccHHH----HH-HHHhCCCEEEEeCccCCCC----------CCcHHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 0 12222 22 2356789999999986431 139999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC
Q 012808 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN 369 (456)
Q Consensus 315 aDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~ 369 (456)
+||+.+|+|++|++++|+|+.+++. +++||.+++++.++++|++|.|+++|+
T Consensus 162 ~dP~~~~~a~~i~~i~~~e~~~~~~---~~~~~~a~~~~~~~~i~v~I~~g~~~~ 213 (229)
T cd04239 162 ADPKKNPDAKKYDRISYDELLKKGL---KVMDATALTLCRRNKIPIIVFNGLKPG 213 (229)
T ss_pred CCCCCCCCCeEEeEEcHHHHHHHhc---CCccHHHHHHHHHCCCeEEEECCCChh
Confidence 9999999999999999999998864 889999999999999999999998874
No 38
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.97 E-value=9.1e-30 Score=246.24 Aligned_cols=212 Identities=25% Similarity=0.337 Sum_probs=159.8
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (456)
Q Consensus 81 ~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i 151 (456)
+++|+|||||++. +.+.++++++.|++.. +.++++|+|+ |.....
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gG-G~~a~~------------------------- 54 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGG-GNIFRG------------------------- 54 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-CHHHHH-------------------------
Confidence 4689999999998 6789999999998643 2355666663 322111
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (456)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii 231 (456)
|... .++ .+....|.+.++++++|+.+++..|+++|+++..+++.+.+.+
T Consensus 55 ---~~~~--~~~-------------------------~~~~~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~ 104 (231)
T PRK00358 55 ---YIGA--AAG-------------------------MDRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQV 104 (231)
T ss_pred ---HHHh--hcC-------------------------CChhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcccc
Confidence 0000 011 1223457788889999999999999999999986666544322
Q ss_pred eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (456)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (456)
+. . . ..+ .+. .+++.+.|||++||.+.. .+.+|++|+.+|.+|+|+++++||||||
T Consensus 105 ~~-----~--~--~~~----~~~-~~l~~g~vPVv~g~~~~~----------~~ssD~~A~~lA~~l~A~~li~~tdVdG 160 (231)
T PRK00358 105 AE-----P--Y--IRR----RAI-RHLEKGRVVIFAAGTGNP----------FFTTDTAAALRAEEIGADVLLKATNVDG 160 (231)
T ss_pred cC-----c--c--cHH----HHH-HHHHCCCEEEEECCCCCC----------CCCchHHHHHHHHHcCCCEEEEeeCcCc
Confidence 21 0 0 112 232 236788999999865421 1238999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEE
Q 012808 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLI 375 (456)
Q Consensus 312 V~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I 375 (456)
||++||+.+|+|++|++++|+|+.++ |++++||+++++|.+++||++|.|+++|+ ..||+|
T Consensus 161 Vy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 230 (231)
T PRK00358 161 VYDADPKKDPDAKKYDRLTYDEVLEK---GLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLV 230 (231)
T ss_pred eEcCCCCCCCCCEEeeEecHHHHHHc---CCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEe
Confidence 99999999999999999999998777 99999999999999999999999998775 357766
No 39
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.97 E-value=2.1e-29 Score=243.91 Aligned_cols=161 Identities=22% Similarity=0.306 Sum_probs=130.1
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCC
Q 012808 190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGF 269 (456)
Q Consensus 190 ~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gf 269 (456)
++...|.++.+||+||+.+++.+|.+.|+++.++++ +....+ +...+.. .+.. +++.+.|||++||
T Consensus 61 ~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~----~~~~~~-----~~~~~~~----~i~~-ll~~g~vpV~~G~ 126 (231)
T PRK14558 61 SPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQ----IVNLPS-----VEPINYD----DIEL-YFRAGYIVIFAGG 126 (231)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecc----ccccch-----hhhhhHH----HHHH-HHHCCCEEEEECC
Confidence 345678899999999999999999999999999885 222111 1111222 2222 3567899999998
Q ss_pred CcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHH
Q 012808 270 LGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQS 349 (456)
Q Consensus 270 ig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a 349 (456)
.+.. .+.+|++|+++|..|+|+.+++||||||||++||+++|+|+++++++|+|+.++ |++++||++
T Consensus 127 ~~~~----------~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a 193 (231)
T PRK14558 127 TSNP----------FFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMDTEA 193 (231)
T ss_pred CCCC----------CCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---CcccccHHH
Confidence 6532 123899999999999999999999999999999999999999999999999886 889999999
Q ss_pred HHHHHhCCCCEEEecCCCCC---------CCceEEee
Q 012808 350 MRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (456)
Q Consensus 350 ~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (456)
+++|+++|||++|.|+++|+ ..||+|.+
T Consensus 194 ~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 194 FSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP 230 (231)
T ss_pred HHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence 99999999999999998764 35777643
No 40
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.97 E-value=1.1e-29 Score=246.00 Aligned_cols=213 Identities=24% Similarity=0.341 Sum_probs=163.2
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (456)
Q Consensus 81 ~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i 151 (456)
+++|+|||||++. +.+.++++++.|++.. +.++|+|+|| |..... .. +
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGg-G~~~~~-~~----~----------------- 57 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGG-GNIFRG-AS----A----------------- 57 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-Cccccc-ch----h-----------------
Confidence 4689999999996 7899999999998643 3467788887 422100 00 0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (456)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii 231 (456)
..++. .....|.+.++++++|+.+++..|++.|+++.++++.+.+.+
T Consensus 58 --------~~~~~-------------------------~~~~~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~ 104 (231)
T cd04254 58 --------AEAGM-------------------------DRATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGV 104 (231)
T ss_pred --------hhcCC-------------------------CchhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhh
Confidence 00111 111236677889999999999999999999999999875222
Q ss_pred eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (456)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (456)
+. ..+...+. .+++.+.|||++||.|.. ..+ +|++|+.+|.+|+|+++++||||||
T Consensus 105 ~~---------~~~~~~l~-----~~l~~g~ipV~~g~~G~~----~~~------~D~~a~~lA~~l~a~~l~~~tdVdG 160 (231)
T cd04254 105 AE---------PYIRRRAI-----RHLEKGRVVIFAGGTGNP----FFT------TDTAAALRAIEINADVILKATKVDG 160 (231)
T ss_pred hc---------ccCHHHHH-----HHHHCCCEEEEECCcCCC----CCC------cHHHHHHHHHHcCCCEEEEEeCCCE
Confidence 10 11222222 235678899999987632 122 8999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (456)
Q Consensus 312 V~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (456)
||++||+.+|+++++++++++|+.+ +|++++|+.++++|++++||++|.|+++|+ ..||+|+
T Consensus 161 vy~~dp~~~~~a~~i~~i~~~~~~~---~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 161 VYDADPKKNPNAKRYDHLTYDEVLS---KGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred EEecCCCCCCCcEEeeEecHHHHHh---cchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 9999999999999999999999866 488999999999999999999999998775 4577763
No 41
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.96 E-value=2.2e-28 Score=237.10 Aligned_cols=213 Identities=24% Similarity=0.352 Sum_probs=161.7
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (456)
Q Consensus 81 ~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i 151 (456)
.++|+|||||++. +.+.++++++.|++.. +.+.|+|+|| | +.+...
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~-G---s~~~~~--------------------- 56 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGG-G---NIFRGV--------------------- 56 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-C---HHHHHH---------------------
Confidence 4789999999998 5788999999998543 2345666666 3 222111
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (456)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii 231 (456)
. ++.++. +....|.+.++++++++.+|+.+|++.|+++..+++.+.+ .
T Consensus 57 ----~--a~~~~~-------------------------~~~~~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~-~ 104 (233)
T TIGR02075 57 ----S--AKELGI-------------------------DRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMP-Q 104 (233)
T ss_pred ----H--HHhcCC-------------------------CCccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCC-C
Confidence 0 111221 1112467889999999999999999999999999987643 1
Q ss_pred eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeec-CC
Q 012808 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VD 310 (456)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TD-V~ 310 (456)
+...+ ... .+.+ +++.+.|||++||.|.. .. .+|++|+++|..|+|+.++|||| ||
T Consensus 105 ~~~~~--------~~~----~i~~-ll~~g~VpV~~g~~g~~----~~------s~D~~a~~lA~~l~a~~li~~td~Vd 161 (233)
T TIGR02075 105 ICESY--------IRR----KAIK-HLEKGKVVIFSGGTGNP----FF------TTDTAAALRAIEINADVILKGTNGVD 161 (233)
T ss_pred Ccccc--------CHH----HHHH-HHHCCCEEEEECCCCCC----CC------CchHHHHHHHHHcCCCEEEEeecccC
Confidence 11111 112 2222 35678899999987642 12 28999999999999999999999 99
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (456)
|||++||+.+|+++++++++|+|+.++ |++++||.++++|.+++||++|.|+.+|+ ..||+|+
T Consensus 162 Gvy~~dp~~~~~a~~i~~i~~~e~~~~---~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 162 GVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred eEEcCCCCCCCCCeECcEecHHHHHhc---CHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 999999999999999999999998764 78899999999999999999999988764 4677763
No 42
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.95 E-value=1.7e-27 Score=229.11 Aligned_cols=201 Identities=22% Similarity=0.306 Sum_probs=158.1
Q ss_pred EEEEeCccccCC---HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 83 CVMKFGGSSLAS---AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 83 ~V~KFGGsSv~s---~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
+|+|||||++.+ .+.++++++.|++..+.+++++|+++|..++.+.+..
T Consensus 2 iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~~~~iiiV~GgG~~a~~~~~~~---------------------------- 53 (221)
T cd04253 2 IVISLGGSVLAPEKDADFIKEYANVLRKISDGHKVAVVVGGGRLAREYISVA---------------------------- 53 (221)
T ss_pred EEEEeccceeCCCCChHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHH----------------------------
Confidence 699999999998 6999999999996543345666777787776655422
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a 239 (456)
++++. +....|.+...++++|+.+++.+|. .|++++.++
T Consensus 54 ~~~~~-------------------------~~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~~--------------- 92 (221)
T cd04253 54 RKLGA-------------------------SEAFLDEIGIMATRLNARLLIAALG-DAYPPVPTS--------------- 92 (221)
T ss_pred HHcCC-------------------------CHHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCCC---------------
Confidence 11211 2234577888899999999998887 777654331
Q ss_pred ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (456)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (456)
...+.+ +++.+.|||++||++ + .+ +|++|+.+|..|+|+.+++||||||||++||+.
T Consensus 93 ------~~~~~~-----~l~~g~vpv~~G~~~-----~-~s------~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~ 149 (221)
T cd04253 93 ------YEEALE-----AMFTGKIVVMGGTEP-----G-QS------TDAVAALLAERLGADLLINATNVDGVYSKDPRK 149 (221)
T ss_pred ------HHHHHH-----HHHcCCeEEEECCCC-----C-Cc------cHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCC
Confidence 112222 245678999999874 2 22 799999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHc-----CC-CcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEE
Q 012808 320 HPHAKPVPYLTFDEAAELAYF-----GA-QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLI 375 (456)
Q Consensus 320 v~~Ak~i~~ls~~Ea~eLa~~-----Ga-~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I 375 (456)
+|+|++|++++++|+.++++. |. .++|+.+++++.++++|++|.|+.+|+ ..||+|
T Consensus 150 ~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I 220 (221)
T cd04253 150 DPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII 220 (221)
T ss_pred CCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEe
Confidence 999999999999999999876 54 688999999999999999999987764 357776
No 43
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.95 E-value=3.9e-27 Score=241.65 Aligned_cols=225 Identities=20% Similarity=0.316 Sum_probs=172.0
Q ss_pred cceEEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCc-hHHHHhhHHHHhcCCCccchHHHHHH
Q 012808 80 QLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTT-NKLLLAGEKAVSCGVTNISCIDELSF 150 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vT-d~Ll~~~~~~~~~~~~~~~~~~~l~~ 150 (456)
..++|+||||++|.+ .+.+.++++.|.... +.++|+|+|++-... +.|
T Consensus 5 ~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~~~l----------------------- 61 (368)
T PRK13402 5 WKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGYHKL----------------------- 61 (368)
T ss_pred CcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCcccc-----------------------
Confidence 367999999999985 489999999998542 345677777641111 111
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (456)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i 230 (456)
+. .+ ......++.+.+.||.++..++...|+++|+++. ++ +
T Consensus 62 ------------~~---------------~~------~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~a-----qv-L 102 (368)
T PRK13402 62 ------------GF---------------ID------RPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAA-----QL-L 102 (368)
T ss_pred ------------CC---------------CC------CCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEE-----EE-E
Confidence 00 00 0011245788899999999999999999999984 34 5
Q ss_pred EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceee--ccCCCChhHHHHHHHHcCCceEEEeec
Q 012808 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKD 308 (456)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vtt--lgRGGSD~tAa~lA~~L~A~~l~i~TD 308 (456)
+|.+++.+.+ .|.++++.+.. +++.+.|||+.. ++.+++ +++|++|++|+++|.+++|+.++||||
T Consensus 103 lT~~d~~~~~----~y~n~~~~l~~-LL~~g~IPIine-------nD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTD 170 (368)
T PRK13402 103 LTHGDLRDRE----RYINIRNTINV-LLERGILPIINE-------NDAVTTDRLKVGDNDNLSAMVAALADADTLIILSD 170 (368)
T ss_pred EecchhhhHH----HHHHHHHHHHH-HHHCCcEEEEeC-------CCcEeecccccCChHHHHHHHHHHhCCCEEEEEec
Confidence 6766654322 24444554443 568899999953 233555 889999999999999999999999999
Q ss_pred CCccccCCCCCCCCCccccccCH--HHHHHHH-----HcCCCcchH--HHHHHHHhCCCCEEEecCCCCC---------C
Q 012808 309 VDGVLTCDPNIHPHAKPVPYLTF--DEAAELA-----YFGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------A 370 (456)
Q Consensus 309 V~GV~taDP~~v~~Ak~i~~ls~--~Ea~eLa-----~~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~ 370 (456)
|||||++||+.+|+|++|+++++ +|+.+++ .+|..+|+| +++..|.++|+|++|.|+.+|+ .
T Consensus 171 VdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~ 250 (368)
T PRK13402 171 IDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQN 250 (368)
T ss_pred CCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhcCCC
Confidence 99999999999999999999997 7787776 467889999 5899999999999999998873 5
Q ss_pred CceEEeec
Q 012808 371 PGTLIRRS 378 (456)
Q Consensus 371 ~GT~I~~~ 378 (456)
.||+|.+.
T Consensus 251 ~GT~i~~~ 258 (368)
T PRK13402 251 PGTYFTPE 258 (368)
T ss_pred CceEEecC
Confidence 79999874
No 44
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.95 E-value=9.2e-27 Score=223.90 Aligned_cols=202 Identities=24% Similarity=0.261 Sum_probs=154.7
Q ss_pred EEEEeCccccCC---HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 83 CVMKFGGSSLAS---AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 83 ~V~KFGGsSv~s---~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
+|+|||||++.+ .+.++++++.|++..+.+.+++|+++|..++.+++.+
T Consensus 1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~~a~~~~~~~---------------------------- 52 (221)
T TIGR02076 1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGKTARRYIGVA---------------------------- 52 (221)
T ss_pred CEEEechhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcHHHHHHHHHH----------------------------
Confidence 489999999988 5999999999986543245655556665554443321
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a 239 (456)
++++. +....|.+...++++|+.++...|+..++++...+..
T Consensus 53 ~~~~~-------------------------~~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~~~------------- 94 (221)
T TIGR02076 53 RELGA-------------------------SETFLDEIGIDATRLNAMLLIAALGDDAYPKVPENFE------------- 94 (221)
T ss_pred HHcCC-------------------------CHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCCHH-------------
Confidence 12221 2335577888899999999999988888876533211
Q ss_pred ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (456)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (456)
...+ .+..+.+||++||++ | ++ +|++|+.+|.+|+|+.+++||||||||++||+.
T Consensus 95 --------~~~~-----~l~~g~ipv~~G~~~-----~-~s------~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~ 149 (221)
T TIGR02076 95 --------EALE-----AMSLGKIVVMGGTHP-----G-HT------TDAVAALLAEFSKADLLINATNVDGVYDKDPKK 149 (221)
T ss_pred --------HHHH-----HHHcCCEEEEcCCCC-----C-CC------cHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCC
Confidence 1111 135678999999862 2 22 799999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHH---cCC---CcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEE
Q 012808 320 HPHAKPVPYLTFDEAAELAY---FGA---QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLI 375 (456)
Q Consensus 320 v~~Ak~i~~ls~~Ea~eLa~---~Ga---~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I 375 (456)
+|+|++|++++++|+.+++. +|. ..+|+.+++.+.+.++|++|.|+.+|+ ..||+|
T Consensus 150 ~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 220 (221)
T TIGR02076 150 DPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220 (221)
T ss_pred CCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEe
Confidence 99999999999999999986 333 367999999999999999999988774 357776
No 45
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.94 E-value=1.5e-26 Score=226.74 Aligned_cols=224 Identities=18% Similarity=0.292 Sum_probs=170.5
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808 83 CVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (456)
Q Consensus 83 ~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (456)
.|+|||||++.+++.++++++.|+... ...++|+||++|+.+|.|++...
T Consensus 1 ~ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g---------------------------- 52 (252)
T cd04249 1 LVIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLN---------------------------- 52 (252)
T ss_pred CEEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC----------------------------
Confidence 389999999999989999999998542 34678999999999999886321
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHH-hhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC--
Q 012808 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT-- 237 (456)
Q Consensus 161 ~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~-s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~-- 237 (456)
.+.. +.++++. .++...+.+. .+++++|..+++.++ ++|++++++++.+.++++.+.++
T Consensus 53 ---~~~~-----------~~~g~rv---t~~~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~ 114 (252)
T cd04249 53 ---FPSE-----------KKNGLRV---TPKEQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPE 114 (252)
T ss_pred ---CCCE-----------EECCEec---CCHHHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCC
Confidence 1100 1122222 2445556654 347899999998865 89999999999998899886543
Q ss_pred --C-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808 238 --N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (456)
Q Consensus 238 --~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (456)
. .++.+.+.+.+.+ +++.+.|||++| +|.+ .+|++++++ +|++|+.+|.+|+|+ +++||||+|||+
T Consensus 115 ~~~~G~v~~i~~~~l~~-----ll~~g~ipVi~~-~g~~-~~g~~~~~~---~D~~A~~lA~~l~A~-~i~ltdv~Gv~~ 183 (252)
T cd04249 115 LGAVGKATANDPSLLND-----LLKAGFLPIISS-IGAD-DQGQLMNVN---ADQAATAIAQLLNAD-LVLLSDVSGVLD 183 (252)
T ss_pred CCcccceEEEcHHHHHH-----HHHCCCEEEECC-CEEC-CCCCEeeec---HHHHHHHHHHHcCCC-EEEEeCCcccCC
Confidence 2 3444444444433 356789999997 6877 479999998 999999999999999 689999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCC-----CcchHHHHHHHHhCCCCEEEecCCCCC
Q 012808 315 CDPNIHPHAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPN 369 (456)
Q Consensus 315 aDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~ 369 (456)
.|| ++|++++++|+.++...|. ...++.+++.+++.+++++|.|+..|+
T Consensus 184 ~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~ 237 (252)
T cd04249 184 ADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPE 237 (252)
T ss_pred CCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence 876 5799999999999987653 334456788888888999999987663
No 46
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.94 E-value=4e-26 Score=226.97 Aligned_cols=230 Identities=21% Similarity=0.296 Sum_probs=169.7
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
.+.|+|||||++.+++.+.++++.|... .+.++|+|++|++.+++.|.+.+..
T Consensus 15 ~~~ViKlGGs~i~~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~------------------------- 69 (279)
T cd04250 15 KTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIE------------------------- 69 (279)
T ss_pred CEEEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCC-------------------------
Confidence 4799999999999988888888887732 2346788888877677666553211
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
.. +.+|++.+.+.+....+.+++ | ++|..+ .+.|++.|++++++++.+.++++.+.++.
T Consensus 70 -------~~-----------~~~g~r~t~~~~~~~~~~~~~-g-~ln~~l-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~ 128 (279)
T cd04250 70 -------SE-----------FVNGLRVTDEETMEIVEMVLV-G-KVNKEI-VSLINRAGGKAVGLSGKDGNLIKAKKKDA 128 (279)
T ss_pred -------CE-----------eECCeecCCHHHHHHHHHHHc-C-chHHHH-HHHHHHcCCCcceeecCCCCEEEEEECcc
Confidence 00 111222222111122234444 7 688886 77899999999999999988999876652
Q ss_pred ------------cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEe
Q 012808 239 ------------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVW 306 (456)
Q Consensus 239 ------------a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~ 306 (456)
.++...+...+.+ +++.+.|||++| ++.+ ..|++++++ +|++|+.+|.+|+|+++++|
T Consensus 129 ~~~~~~~~~~~~g~i~~i~~~~i~~-----ll~~g~IPVi~~-~~~~-~~g~~~~~~---~D~~A~~lA~~l~A~~li~l 198 (279)
T cd04250 129 TVIEEIIDLGFVGEVTEVNPELLET-----LLEAGYIPVIAP-VGVG-EDGETYNIN---ADTAAGAIAAALKAEKLILL 198 (279)
T ss_pred cccCCCcccCcccceEEEcHHHHHH-----HHHCCCeEEEcC-CccC-CCCcEEEeC---HHHHHHHHHHHhCCCEEEEE
Confidence 2343444433332 457789999999 6777 478888887 99999999999999999999
Q ss_pred ecCCccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCC-EEEecCCCCC
Q 012808 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN 369 (456)
Q Consensus 307 TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~ 369 (456)
|||+|||++||+ ++++|++++++|+.++++.| ...|.++ ++..+.+++++ ++|.|+.+|+
T Consensus 199 tdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~ 263 (279)
T cd04250 199 TDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEACIEALEGGVKAAHIIDGRVPH 263 (279)
T ss_pred ECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 999999999984 47999999999999998643 3577775 66677788886 9999987764
No 47
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.94 E-value=1.3e-25 Score=231.42 Aligned_cols=227 Identities=23% Similarity=0.369 Sum_probs=167.6
Q ss_pred cceEEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808 80 QLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i 151 (456)
.+++|+|||||++.+ .+.+.++++.|.... +.++|+|+|++-+....
T Consensus 8 ~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGai~~g~~------------------------- 62 (372)
T PRK05429 8 ARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGAVAAGRE------------------------- 62 (372)
T ss_pred CCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccHhhhhHh-------------------------
Confidence 357999999999986 789999999998653 23555666543111110
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (456)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii 231 (456)
.+++... ......++.+.+.||...+.++..+|+++|+++.. + ++
T Consensus 63 ---------~l~l~~~--------------------~~~~~~~qa~aavGq~~L~~~~~~~l~~~gi~~~q-----i-l~ 107 (372)
T PRK05429 63 ---------RLGLPER--------------------PKTLAEKQAAAAVGQSRLMQAYEELFARYGITVAQ-----I-LL 107 (372)
T ss_pred ---------hcCCCCC--------------------CCchHHHHHHHHHhHHHHHHHHHHHHHHCCCCEEE-----E-Ee
Confidence 1111100 01123457788999999999999999999999755 3 46
Q ss_pred eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCcee--eccCCCChhHHHHHHHHcCCceEEEeecC
Q 012808 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAIT--TLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (456)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vt--tlgRGGSD~tAa~lA~~L~A~~l~i~TDV 309 (456)
|.+++.+.. .+.+..+.+ ..+++.+.|||++. ++.+. .+++|++|++|+++|.+|+|+.++|||||
T Consensus 108 t~~d~~~~~----~~ln~~~~i-~~Ll~~g~IPVi~~-------nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDV 175 (372)
T PRK05429 108 TRDDLEDRE----RYLNARNTL-RTLLELGVVPIINE-------NDTVATDEIKFGDNDTLSALVANLVEADLLILLTDV 175 (372)
T ss_pred ehhHhhhhh----HhhhHHHHH-HHHHHCCCEEEEcC-------CCccceecccccChHHHHHHHHHHcCCCEEEEecCC
Confidence 665553211 111222222 33567899999964 22222 36889999999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchH--HHHHHHHhCCCCEEEecCCCCC---------CC
Q 012808 310 DGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------AP 371 (456)
Q Consensus 310 ~GV~taDP~~v~~Ak~i~~ls~--~Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~~ 371 (456)
||||++||+.+|++++|+++++ +|+.+++. +|..+|+| +++..+.++|+|++|.|+.+|+ ..
T Consensus 176 dGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~ 255 (372)
T PRK05429 176 DGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAV 255 (372)
T ss_pred CeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCCC
Confidence 9999999999999999999998 67888863 67889999 5899999999999999987763 57
Q ss_pred ceEEeec
Q 012808 372 GTLIRRS 378 (456)
Q Consensus 372 GT~I~~~ 378 (456)
||+|.+.
T Consensus 256 GT~i~~~ 262 (372)
T PRK05429 256 GTLFLPQ 262 (372)
T ss_pred CEEEeeC
Confidence 9999875
No 48
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.94 E-value=9.9e-26 Score=224.52 Aligned_cols=236 Identities=23% Similarity=0.328 Sum_probs=171.8
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
.++|+||||+++.+++.+..+++.|....+ ..++||||++|+.++.+++...
T Consensus 24 ~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g--------------------------- 76 (283)
T PRK00942 24 KTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLG--------------------------- 76 (283)
T ss_pred CeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCC---------------------------
Confidence 468999999999999999999988874321 2346899999999998876211
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC---
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--- 236 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~--- 236 (456)
.... +.+|++.+.+.+-...+.+++ | +++..++ ++|+++|+++.++++.+.++++.+++
T Consensus 77 ----~~~~-----------~~~g~~~t~~~~l~~~~~a~~-G-~l~~~i~-~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~ 138 (283)
T PRK00942 77 ----IESE-----------FVNGLRVTDAETMEVVEMVLA-G-KVNKELV-SLINKHGGKAVGLSGKDGGLITAKKLEED 138 (283)
T ss_pred ----CCcE-----------eeCCEecCCHHHHHHHHHHHc-C-chHHHHH-HHHHhCCCCccceeeccCCEEEEEECCCC
Confidence 0000 112222211111112234444 7 7787766 78999999999999999989998655
Q ss_pred ---CC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808 237 ---TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (456)
Q Consensus 237 ---~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (456)
+. .++...+...+.+ +++.|.|||+++ ++.+ .+|++++++ +|++|+.+|.+|+|++++|||||+||
T Consensus 139 ~~~~~~g~i~~i~~~~l~~-----ll~~g~vpVv~~-~~~~-~~g~~~~l~---~D~~A~~lA~~l~A~~li~~tdv~Gv 208 (283)
T PRK00942 139 EDLGFVGEVTPVNPALLEA-----LLEAGYIPVISP-IGVG-EDGETYNIN---ADTAAGAIAAALGAEKLILLTDVPGV 208 (283)
T ss_pred CCCccccceEEECHHHHHH-----HHHCCCEEEEcC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCccc
Confidence 21 3444444443333 357789999997 6877 478999897 99999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchHH--HHHHHHhCCC-CEEEecCCCCC----------CCceEEee
Q 012808 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHPQ--SMRPAREGDI-PVRVKNSYNPN----------APGTLIRR 377 (456)
Q Consensus 313 ~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga--~vlhp~--a~~~a~~~~I-pv~I~n~~~p~----------~~GT~I~~ 377 (456)
|++ ++++|++++++|+.+++..+. ..|.|+ ++..+.++|+ +++|.|+..|+ ..||+|.+
T Consensus 209 ~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 282 (283)
T PRK00942 209 LDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP 282 (283)
T ss_pred ccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence 986 478999999999999987642 466665 5556667887 59999876654 36888865
No 49
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.94 E-value=7.6e-26 Score=218.85 Aligned_cols=216 Identities=19% Similarity=0.264 Sum_probs=159.9
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (456)
++|+||||+++.++ ++++++.|.... ...++|+||++++.+|.+++....
T Consensus 1 ~~ViK~GGs~l~~~--~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~--------------------------- 51 (231)
T TIGR00761 1 TIVIKIGGAAISDL--LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGI--------------------------- 51 (231)
T ss_pred CEEEEEChHHHhcc--HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCC---------------------------
Confidence 47999999999987 889999888542 233467889999999988763210
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC--
Q 012808 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT-- 237 (456)
Q Consensus 161 ~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~-- 237 (456)
+.. +.++++ ..++...+.+ .++++++|..+++ .|+++|++++++++.+.++++.+.+.
T Consensus 52 ----~~~-----------~~~g~r---~t~~~~~~~~~~~~~g~~~~~i~~-~L~~~G~~a~~l~~~~~~~it~~~~~~~ 112 (231)
T TIGR00761 52 ----PPE-----------FKNGLR---VTDKETLEVVEMVLIGQVNKELVA-LLNKHGINAIGLTGGDGQLFTARSLDKE 112 (231)
T ss_pred ----CCE-----------ecCCCc---cCCHHHHHHHHHHHhcchHHHHHH-HHHhCCCCcccccCCCCCEEEEEECCCc
Confidence 000 011111 1223333332 2335688988776 79999999999999998888876443
Q ss_pred ---C-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808 238 ---N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (456)
Q Consensus 238 ---~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (456)
+ .++...+.+.+.+ +++.+.|||++| +|.+ .+|++++++ +|++|+.+|.+|+|++++|||||+|||
T Consensus 113 ~~~~~g~i~~i~~~~i~~-----~l~~g~IPVi~~-~~~~-~~g~~~~l~---sD~~A~~lA~~l~A~~li~ltdv~Gv~ 182 (231)
T TIGR00761 113 DLGYVGEIKKVNKALLEA-----LLKAGYIPVISS-LALT-AEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGIL 182 (231)
T ss_pred cCCcccceEEEcHHHHHH-----HHHCCCeEEECC-CccC-CCCcEEEeC---HHHHHHHHHHHcCCCEEEEEECCCCee
Confidence 2 3444444444433 356789999999 5777 489999997 999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCCE
Q 012808 314 TCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIPV 360 (456)
Q Consensus 314 taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ipv 360 (456)
++||+ ++|++|+++|+.+|++.| ...|.|| ++..+.++|++-
T Consensus 183 ~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~ 228 (231)
T TIGR00761 183 NGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKS 228 (231)
T ss_pred cCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCE
Confidence 99884 689999999999999876 4678886 677777888863
No 50
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.93 E-value=8.4e-25 Score=224.77 Aligned_cols=225 Identities=22% Similarity=0.383 Sum_probs=165.0
Q ss_pred eEEEEeCccccCCHH------HHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAE------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~------~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~ 153 (456)
++|+|||||++.+++ .++++++.|.... +.++|+|+|++ +.- +.
T Consensus 2 riVIKiGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~--~~~-----g~--------------------- 53 (363)
T TIGR01027 2 RIVVKVGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGA--IAA-----GF--------------------- 53 (363)
T ss_pred eEEEEeccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcH--Hhc-----Cc---------------------
Confidence 589999999999854 4889999988643 23455666643 210 00
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEee
Q 012808 154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (456)
Q Consensus 154 ~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~ 233 (456)
+.+++... ...-..++.+.+.|+.++..++...|.++|+++. ++ ++|.
T Consensus 54 ------~~lg~~~~--------------------~~~l~~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~a-----qi-llt~ 101 (363)
T TIGR01027 54 ------EALGLPER--------------------PKTLAEKQALAAVGQVRLMQLYEQLFSQYGIKVA-----QI-LLTR 101 (363)
T ss_pred ------cccCCCCC--------------------ccchHHHHHHHHhChHHHHHHHHHHHHHcCCeEE-----EE-EEec
Confidence 01111110 0112344678899999999999999999999963 33 6777
Q ss_pred cCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCce--eeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI--TTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (456)
Q Consensus 234 ~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~v--ttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (456)
++|.+.+ .+.+.+..+. .+++.+.|||++- ++.+ +.+++|++|++|+++|.+++|+.++|||||||
T Consensus 102 ~d~~~~~----~~lna~~~i~-~Ll~~g~iPVi~e-------nd~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdG 169 (363)
T TIGR01027 102 ADFSDRE----RYLNARNTLE-ALLELGVVPIINE-------NDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDG 169 (363)
T ss_pred cchhhHH----HHHHHHHHHH-HHHhCCCEEEEeC-------CCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 7665421 2222333333 3467889999952 2222 44789999999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHH--HHHHHH-----HcCCCcchHH--HHHHHHhCCCCEEEecCCCCC---------CCce
Q 012808 312 VLTCDPNIHPHAKPVPYLTFD--EAAELA-----YFGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN---------APGT 373 (456)
Q Consensus 312 V~taDP~~v~~Ak~i~~ls~~--Ea~eLa-----~~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~---------~~GT 373 (456)
||++||+.+|+|++|+++++. +..+++ .+|...|+|+ ++..|.++|+|++|.|+.+|+ ..||
T Consensus 170 Vy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT 249 (363)
T TIGR01027 170 LYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGT 249 (363)
T ss_pred ccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcE
Confidence 999999999999999999964 455565 4678899998 899999999999999998764 4699
Q ss_pred EEeec
Q 012808 374 LIRRS 378 (456)
Q Consensus 374 ~I~~~ 378 (456)
+|.+.
T Consensus 250 ~i~~~ 254 (363)
T TIGR01027 250 LFHAQ 254 (363)
T ss_pred EEeeC
Confidence 99874
No 51
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.93 E-value=1.8e-24 Score=210.16 Aligned_cols=215 Identities=21% Similarity=0.286 Sum_probs=164.0
Q ss_pred cceEEEEeCccccCC-------HHHHHHHHHHHHcCCC--CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s-------~~~~~~va~iI~~~~~--~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~ 150 (456)
...+|+|++|..+.. ++.++++++.|+...+ .+..||| ++|++-.-.
T Consensus 15 ~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVv-GGGni~Rg~----------------------- 70 (249)
T PRK14556 15 LKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVV-GGGNILRGG----------------------- 70 (249)
T ss_pred hCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEE-CCCHHHhCc-----------------------
Confidence 356899999999974 4789999999987543 3555666 455443310
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (456)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i 230 (456)
...++ ........|++..++.++|+.++..+|.+.|+++..+++-..
T Consensus 71 --------~~~~~-----------------------~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa~~~-- 117 (249)
T PRK14556 71 --------RANFG-----------------------NKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGV-- 117 (249)
T ss_pred --------hhhcc-----------------------CCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeecccc--
Confidence 00000 012345679999999999999999999999999988877442
Q ss_pred EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
..+ +++. +++++. +. ++.|.|+|+.|+.|.. .++ +|++|+++|..++|+.+++|||||
T Consensus 118 ---~~~--~e~~--~~~~~~----~~-l~~g~vvi~~gg~G~p----~~S------tD~lAallA~~l~Ad~Lii~TdVD 175 (249)
T PRK14556 118 ---DGL--LKVA--SAHEFN----QE-LAKGRVLIFAGGTGNP----FVT------TDTTASLRAVEIGADALLKATTVN 175 (249)
T ss_pred ---CcC--CCCC--CHHHHH----HH-HhCCCEEEEECCCCCC----cCC------cHHHHHHHHHHcCCCEEEEEeCCC
Confidence 111 2222 333333 22 4678899989987743 234 899999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (456)
||||+||+++|+|+++++++|+|+.+. +.+++++.+++++++++||++|.|+.+|+ ..||+|.
T Consensus 176 GVYd~DP~~~p~A~~i~~I~~~e~~~~---~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~ 247 (249)
T PRK14556 176 GVYDKDPNKYSDAKRFDKVTFSEVVSK---ELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVT 247 (249)
T ss_pred ccCCCCCCCCCCceEeeEEchhhhccc---chHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEE
Confidence 999999999999999999999998663 56899999999999999999999988774 4688875
No 52
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.93 E-value=6.3e-25 Score=242.99 Aligned_cols=237 Identities=19% Similarity=0.259 Sum_probs=175.5
Q ss_pred cceEEEEeCccccCCHH------HHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808 80 QLTCVMKFGGSSLASAE------RMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s~~------~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i 151 (456)
..++|+|||||||.+.+ +|++++++|.+. .+.++|+|+||+.++|+.++...+..
T Consensus 15 ~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~----------------- 77 (718)
T PLN02418 15 VKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLV----------------- 77 (718)
T ss_pred CCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhh-----------------
Confidence 35799999999999988 999999999853 34568999999999999888754310
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (456)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii 231 (456)
+++..+ +. .......+..+.++||.+++.+++.+|+++|+++ +++ ++
T Consensus 78 --------~~~~~~-------------~~------~~~~~~~~qa~aa~Gq~~l~~~~~~~f~~~g~~~-----~qi-ll 124 (718)
T PLN02418 78 --------NSSFAD-------------LQ------KPQMELDGKACAAVGQSELMALYDTLFSQLDVTA-----SQL-LV 124 (718)
T ss_pred --------hccccc-------------CC------CCcchHHHHHHHHhhHHHHHHHHHHHHHHcCCeE-----EEE-Ee
Confidence 000000 00 0001112237899999999999999999999954 556 78
Q ss_pred eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccC---------CCChhHHHHHHHHcCCce
Q 012808 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---------GGSDLTATTIGKALGLQE 302 (456)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgR---------GGSD~tAa~lA~~L~A~~ 302 (456)
|+++|.+.+. +.+..+.+. .+++.|.|||+.| ++.+++..+ +++|++|+++|.+++|+.
T Consensus 125 T~~~~~~~~~----~~~~~~~l~-~ll~~g~iPVv~~-------nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~ 192 (718)
T PLN02418 125 TDSDFRDPDF----RKQLSETVE-SLLDLRVIPIFNE-------NDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADL 192 (718)
T ss_pred cHhHhcchhH----hHhHHHHHH-HHHHCCCEEEEcC-------CCCccccccccccccCeecCcHHHHHHHHHHcCCCE
Confidence 8888876543 233334443 3467889999965 344554422 269999999999999999
Q ss_pred EEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHc------CCCcchHH--HHHHHHhCCCCEEEecCCCCC-----
Q 012808 303 IQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF------GAQVLHPQ--SMRPAREGDIPVRVKNSYNPN----- 369 (456)
Q Consensus 303 l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~------Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~----- 369 (456)
++|||||||||++||+ .|++++|++++..+....... |...|.|| ++..+.++|++++|.|+..|+
T Consensus 193 li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~~ 271 (718)
T PLN02418 193 LILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDNIRKV 271 (718)
T ss_pred EEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHHCCCcEEEeCCCCcchHHHH
Confidence 9999999999999998 599999999987654332222 45688884 888999999999999987664
Q ss_pred ----CCceEEeecc
Q 012808 370 ----APGTLIRRSR 379 (456)
Q Consensus 370 ----~~GT~I~~~~ 379 (456)
..||+|.+..
T Consensus 272 l~g~~~GT~i~~~~ 285 (718)
T PLN02418 272 LRGERVGTLFHQDA 285 (718)
T ss_pred hcCCCCceEecccc
Confidence 4799997643
No 53
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.92 E-value=6.2e-25 Score=215.70 Aligned_cols=223 Identities=22% Similarity=0.293 Sum_probs=163.0
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808 83 CVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (456)
Q Consensus 83 ~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (456)
.|+||||+++.+++.++++++.|.... ...++|||+++++.+|.|++.....
T Consensus 1 ~ViKlGGs~l~~~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~--------------------------- 53 (256)
T cd04238 1 VVIKYGGSAMKDEELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIE--------------------------- 53 (256)
T ss_pred CEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCC---------------------------
Confidence 489999999999999999999887432 1234667799999999988642210
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHH---HHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC--
Q 012808 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSR---DYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF-- 236 (456)
Q Consensus 162 l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~---d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~-- 236 (456)
.. +.++++ ..++... +..++ | ++|..| .++|+++|++++++++.+.++++++.+
T Consensus 54 ----~~-----------~~~~~r---~t~~~~l~~~~~a~~-g-~ln~~i-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~ 112 (256)
T cd04238 54 ----SE-----------FVNGLR---VTDKETMEIVEMVLA-G-KVNKEL-VSLLNRAGGKAVGLSGKDGGLIKAEKKEE 112 (256)
T ss_pred ----CE-----------eECCee---cCCHHHHHHHHHHHc-C-chHHHH-HHHHHhCCCCCCCcccccCCEEEEEECCC
Confidence 00 001111 1122222 23333 6 888887 778999999999999999888988652
Q ss_pred -----CC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 237 -----TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 237 -----~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
+. .++...+...+.+ +++.+.|||++| ++.+ .+|++++++ +|++|+.+|.+|+|++++|||||+
T Consensus 113 ~~~~~~~~g~i~~i~~~~l~~-----ll~~g~ipVv~~-~~~~-~~g~~~~~~---~D~~A~~lA~~l~a~~li~ltdv~ 182 (256)
T cd04238 113 KDIDLGFVGEVTEVNPELLET-----LLEAGYIPVIAP-IAVD-EDGETYNVN---ADTAAGAIAAALKAEKLILLTDVP 182 (256)
T ss_pred CCCCcccccceEEECHHHHHH-----HHHCCCEEEECC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEeCCc
Confidence 21 3444444444433 357789999998 5777 478888887 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCC-CEEEecCCCCC
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDI-PVRVKNSYNPN 369 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~I-pv~I~n~~~p~ 369 (456)
|||++ +++++++++++|+.++...+ ...|.|+ ++..+.++++ +++|.|+..|+
T Consensus 183 Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~ 240 (256)
T cd04238 183 GVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPH 240 (256)
T ss_pred cccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 99987 27899999999999998533 3567765 5556667676 59999987663
No 54
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.92 E-value=2.7e-24 Score=212.68 Aligned_cols=174 Identities=18% Similarity=0.247 Sum_probs=138.3
Q ss_pred CCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec----------------CCCC-cceeecchHHHH
Q 012808 189 LTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD----------------DFTN-ADILEATYPAVA 250 (456)
Q Consensus 189 ~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~----------------~~~~-a~i~~~~~~~i~ 250 (456)
.+++..+.+ .++| ++|..+++ .|+++|++|+.+++.+.++++.+ +++. .++...+.+.+.
T Consensus 66 t~~~~l~~~~~a~~-~ln~~lv~-~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~ 143 (268)
T PRK14058 66 TDRETLEVFIMAMA-LINKQLVE-RLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLK 143 (268)
T ss_pred CCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHH
Confidence 356666664 6888 99999886 89999999999999998777643 1222 344444444443
Q ss_pred HHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccC
Q 012808 251 KRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (456)
Q Consensus 251 ~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls 330 (456)
. +++.+.|||++|+ +.+ .+|+.++++ +|++|+.+|.+|+|++++|||||+|||++||+ ++++|++++
T Consensus 144 ~-----ll~~g~iPVi~~~-~~~-~~g~~~~i~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~ 210 (268)
T PRK14058 144 L-----LLKAGYLPVVAPP-ALS-EEGEPLNVD---GDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERIT 210 (268)
T ss_pred H-----HHHCCCEEEEeCc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcC
Confidence 3 3577899999996 545 478888776 99999999999999999999999999999994 578999999
Q ss_pred HHHHHHHHHcCCCcchHH--HHHHHHhCCC-CEEEecCCCCC-------CCceEEee
Q 012808 331 FDEAAELAYFGAQVLHPQ--SMRPAREGDI-PVRVKNSYNPN-------APGTLIRR 377 (456)
Q Consensus 331 ~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~I-pv~I~n~~~p~-------~~GT~I~~ 377 (456)
++|+.++..+....|.|| ++..+.++|+ +++|.|+.+|+ ..||+|.+
T Consensus 211 ~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~GT~I~~ 267 (268)
T PRK14058 211 PEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGEGTVIVN 267 (268)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCCceEEec
Confidence 999999987777788886 6777888899 79999987775 35999864
No 55
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.92 E-value=1.4e-23 Score=199.41 Aligned_cols=214 Identities=24% Similarity=0.360 Sum_probs=164.3
Q ss_pred ceEEEEeCccccCC-------HHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHH
Q 012808 81 LTCVMKFGGSSLAS-------AERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (456)
Q Consensus 81 ~~~V~KFGGsSv~s-------~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~ 152 (456)
+.+|+|+||+.+.. ++.++++++.|++..+ +..|.||-++|++-......
T Consensus 6 ~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~---------------------- 63 (238)
T COG0528 6 MRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGA---------------------- 63 (238)
T ss_pred EEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHH----------------------
Confidence 66999999999975 5899999999987643 33464555666655432221
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEe
Q 012808 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (456)
Q Consensus 153 ~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit 232 (456)
+ .|. +....|++..++.++|+.+|...|++.|+++..+++..+..+
T Consensus 64 ------~--~g~-------------------------~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai~~~~~- 109 (238)
T COG0528 64 ------A--AGM-------------------------DRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQV- 109 (238)
T ss_pred ------H--cCC-------------------------chhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccccCccc-
Confidence 1 021 334569999999999999999999999999998887654211
Q ss_pred ecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeec-CCc
Q 012808 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VDG 311 (456)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TD-V~G 311 (456)
+++ .++.+ ..++ ++.+.|+|..|-.|.. |.+ +|++|+++|..++||-++..|+ |||
T Consensus 110 ------~e~--~~~~~----A~~~-l~~grVvIf~gGtg~P---~fT-------TDt~AALrA~ei~ad~ll~atn~VDG 166 (238)
T COG0528 110 ------AEP--YSRRE----AIRH-LEKGRVVIFGGGTGNP---GFT-------TDTAAALRAEEIEADVLLKATNKVDG 166 (238)
T ss_pred ------cCc--cCHHH----HHHH-HHcCCEEEEeCCCCCC---CCc-------hHHHHHHHHHHhCCcEEEEeccCCCc
Confidence 111 12222 2222 5678999998844432 333 7999999999999999999995 999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (456)
Q Consensus 312 V~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (456)
||++||+++|+|+.+++|||+|+.++ +-++|+|.|+..+++++||++|.|.++|. +.||.|.
T Consensus 167 VY~~DPkk~pdA~~~~~Lty~e~l~~---~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~ 237 (238)
T COG0528 167 VYDADPKKDPDAKKYDTLTYDEVLKI---GLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE 237 (238)
T ss_pred eeCCCCCCCCCceecccCCHHHHHHh---cCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEec
Confidence 99999999999999999999998887 47999999999999999999999977764 4566664
No 56
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.90 E-value=1.1e-22 Score=199.24 Aligned_cols=148 Identities=20% Similarity=0.257 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeec
Q 012808 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (456)
Q Consensus 203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttl 282 (456)
+++.. +.++|.++|+++.++++.++ +.+.. .++...+...+.+ +++.+.|||++|+.+.+ .+|.+.++
T Consensus 80 ~ln~~-~~~~l~~~g~~a~~l~~~~~-~~~~~----g~~~~~~~~~l~~-----ll~~g~iPVi~~~~~~~-~~~~~~~~ 147 (252)
T cd04241 80 ELNSI-VVDALLEAGVPAVSVPPSSF-FVTEN----GRIVSFDLEVIKE-----LLDRGFVPVLHGDVVLD-EGGGITIL 147 (252)
T ss_pred HHHHH-HHHHHHHCCCCeEEEChHHe-EEecC----CeeeeecHHHHHH-----HHhCCCEEEEcCCeEec-CCCCeEEe
Confidence 66665 56678999999999999886 33321 2333334333332 35789999999987766 46767777
Q ss_pred cCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHc-------CCCcchHH--HHHHH
Q 012808 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF-------GAQVLHPQ--SMRPA 353 (456)
Q Consensus 283 gRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~-------Ga~vlhp~--a~~~a 353 (456)
+ +|++|+.+|.+|+|+++++||||||||++|| |++++|++++++|+.++... ....|.|+ ++..+
T Consensus 148 ~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a 221 (252)
T cd04241 148 S---GDDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLEL 221 (252)
T ss_pred C---hHHHHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHH
Confidence 6 9999999999999999999999999999999 89999999999988888652 23567776 67778
Q ss_pred HhCCCCEEEecCCCC
Q 012808 354 REGDIPVRVKNSYNP 368 (456)
Q Consensus 354 ~~~~Ipv~I~n~~~p 368 (456)
.++|++++|.|+.+|
T Consensus 222 ~~~Gv~v~I~~g~~~ 236 (252)
T cd04241 222 ARRGIEVYIFNGDKP 236 (252)
T ss_pred HhcCCeEEEEeCCCH
Confidence 889999999998776
No 57
>PLN02512 acetylglutamate kinase
Probab=99.89 E-value=1.2e-21 Score=197.62 Aligned_cols=236 Identities=20% Similarity=0.291 Sum_probs=164.2
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
.++|+||||+++.+++....+.+.|... .+.++|+|+ ++|...+.+++
T Consensus 48 ~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlVH-GgG~~i~~~~~----------------------------- 97 (309)
T PLN02512 48 KTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLVH-GGGPEINSWLK----------------------------- 97 (309)
T ss_pred CeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEEE-CCcHHHHHHHH-----------------------------
Confidence 5699999999999877666666666532 233445555 45555554443
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~ 237 (456)
.+++++. +.+|++. .++.+.+.+ ..+.-.++..+. +.|+++|++++++++.+.++++.+.+.
T Consensus 98 --~~gi~~~-----------~~~G~rv---T~~~~lei~~~~l~g~ln~~lv-~~L~~~Gv~av~l~g~d~~~i~a~~~~ 160 (309)
T PLN02512 98 --KVGIEPQ-----------FKNGLRV---TDAETMEVVEMVLVGKVNKSLV-SLINKAGGTAVGLSGKDGRLLRARPSP 160 (309)
T ss_pred --HcCCCCc-----------CCCCCcC---CCHHHHHHHHHHHhhHHHHHHH-HHHHHcCCCeEEeehhhCCEEEEEEcC
Confidence 1122211 2233332 234444443 222226677765 579999999999999998888887553
Q ss_pred C-------cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 238 N-------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 238 ~-------a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
+ .++...+...+. .+++.+.|||++|+ +.+ .+|+..+++ +|++|+.+|.+|+|++++|||||+
T Consensus 161 ~~~~~~~~G~i~~v~~~~i~-----~lL~~g~IPVi~~~-~~d-~~g~~~~i~---~D~~A~~lA~~L~Ad~li~lTdV~ 230 (309)
T PLN02512 161 NSADLGFVGEVTRVDPTVLR-----PLVDDGHIPVIATV-AAD-EDGQAYNIN---ADTAAGEIAAALGAEKLILLTDVA 230 (309)
T ss_pred cCccccccceeeecCHHHHH-----HHHhCCCEEEEeCc-eEC-CCCCEeccC---HHHHHHHHHHHcCCCEEEEEeCCc
Confidence 2 234344443333 24578899999995 777 478888886 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCC-EEEecCCCCC----------CCceEE
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTLI 375 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~I 375 (456)
|||++|| +++++|++++++|+.++...| ...|.|| ++..+.++|++ ++|.|+..|+ ..||+|
T Consensus 231 GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I 307 (309)
T PLN02512 231 GVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMI 307 (309)
T ss_pred ceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEE
Confidence 9999864 358899999999999998544 4678886 55666788996 8999876653 357777
Q ss_pred e
Q 012808 376 R 376 (456)
Q Consensus 376 ~ 376 (456)
.
T Consensus 308 ~ 308 (309)
T PLN02512 308 T 308 (309)
T ss_pred e
Confidence 5
No 58
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.88 E-value=5.7e-22 Score=197.66 Aligned_cols=235 Identities=17% Similarity=0.250 Sum_probs=166.4
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
.+.|.|+||+.+.++...+.+++.|.... ...++|+|++.|..-+.+++
T Consensus 24 ~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~------------------------------ 73 (284)
T CHL00202 24 RIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLK------------------------------ 73 (284)
T ss_pred CeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH------------------------------
Confidence 57999999999988666667777776532 22345555565654444433
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHH-hhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC--
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF-- 236 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~-s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~-- 236 (456)
++++++. +.+|++.+ ++.+.+.+. .+.-.++..+.+ .|++.|++++++++.+.++++....
T Consensus 74 -~~g~~~~-----------~~~G~rvT---~~~~l~~~~~~l~g~ln~~lv~-~L~~~Gv~av~l~~~d~~~i~a~~~~~ 137 (284)
T CHL00202 74 -QLNISPK-----------FWNGIRVT---DKVTMEIVEMVLAGKVNKDLVG-SINANGGKAVGLCGKDANLIVARASDK 137 (284)
T ss_pred -HCCCCCE-----------eECCcccC---CHHHHHHHHHHHhhHHHHHHHH-HHHhCCCCeeeeeeccCCEEEEEeCCC
Confidence 1222221 23455433 445555442 233367888654 5899999999999999888876532
Q ss_pred ---CC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808 237 ---TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (456)
Q Consensus 237 ---~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (456)
+. .++...+...+.. +++.+.|||++|+ +.+ ..|++++++ +|++|+.+|.+|+|++++|||||+||
T Consensus 138 ~d~~~~G~i~~v~~~~i~~-----ll~~g~iPVi~~~-~~~-~~g~~~ni~---~D~~A~~lA~~l~Ad~li~lTdv~Gv 207 (284)
T CHL00202 138 KDLGLVGEIQQVDPQLIDM-----LLEKNYIPVIASV-AAD-HDGQTYNIN---ADVVAGEIAAKLNAEKLILLTDTPGI 207 (284)
T ss_pred cccccceeEEecCHHHHHH-----HHHCCCEEEECCC-ccC-CCCcEEecC---HHHHHHHHHHHhCCCEEEEEeCChhh
Confidence 22 2444444443433 3577899999994 777 478888888 99999999999999999999999999
Q ss_pred ccC--CCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCC-EEEecCCCCC----------CCceEE
Q 012808 313 LTC--DPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTLI 375 (456)
Q Consensus 313 ~ta--DP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~I 375 (456)
|+. || .+++++++++|+.++...| ...|.|| ++..+.++|++ ++|.++.+|+ ..||+|
T Consensus 208 ~~~~~d~-----~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i 282 (284)
T CHL00202 208 LADINDP-----NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSML 282 (284)
T ss_pred cCCCCCC-----CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEE
Confidence 984 34 3799999999999998765 3578886 66777888987 7899887764 358877
Q ss_pred e
Q 012808 376 R 376 (456)
Q Consensus 376 ~ 376 (456)
.
T Consensus 283 ~ 283 (284)
T CHL00202 283 V 283 (284)
T ss_pred e
Confidence 4
No 59
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.87 E-value=2.2e-21 Score=189.29 Aligned_cols=228 Identities=23% Similarity=0.333 Sum_probs=173.9
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
.+.|.|+||+.+.+.+.+..+++.|.-. .+.++|||+ +.|...|++++
T Consensus 3 k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVH-Gggp~I~~~l~----------------------------- 52 (265)
T COG0548 3 KTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVH-GGGPQIDEMLA----------------------------- 52 (265)
T ss_pred ceEEEEECceeecCchHHHHHHHHHHHHHHCCCcEEEEe-CCchHHHHHHH-----------------------------
Confidence 5799999999999999899999987643 345775555 55555554443
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC--
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-- 235 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~-- 235 (456)
.+++++. |.+|+|++ ++.+.+.+ +.++-.+|..|.+ .|+..|.+++.+++.+.++++...
T Consensus 53 --~~gie~~-----------f~~glRvT---d~~tlevv~mvl~G~vNk~iva-~l~~~g~~avGlsg~Dg~li~A~~~~ 115 (265)
T COG0548 53 --KLGIEPE-----------FVKGLRVT---DAETLEVVEMVLGGTVNKEIVA-RLSKHGGQAVGLSGVDGNLVTAKKLD 115 (265)
T ss_pred --HcCCCCe-----------eeCCEEcC---CHHHHHHHHHHHHHHHHHHHHH-HHHHhCCcceeeeecCCCEEEEEEcc
Confidence 2333332 55666554 44555554 4556678888765 589999999999999988888753
Q ss_pred ------CCCc-ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeec
Q 012808 236 ------FTNA-DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308 (456)
Q Consensus 236 ------~~~a-~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TD 308 (456)
++.. ++..++..- ...+++++.|||+++ +|.+ .+|++.+++ +|+.|+.+|.+|+|++++++||
T Consensus 116 ~~~~id~g~vG~i~~Vn~~~-----i~~ll~~~~IpViap-ia~~-~~G~~~Nvn---aD~~A~~iA~aLkAekLi~ltd 185 (265)
T COG0548 116 VDDGVDLGYVGEIRKVNPEL-----IERLLDNGAIPVIAP-IAVD-EDGETLNVN---ADTAAGALAAALKAEKLILLTD 185 (265)
T ss_pred cccccccceeeeEEEECHHH-----HHHHHhCCCceEEec-ceEC-CCCcEEeeC---HHHHHHHHHHHcCCCeEEEEeC
Confidence 3332 444455433 333467899999998 7888 589999999 9999999999999999999999
Q ss_pred CCccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCC-CEEEecCCCCC
Q 012808 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDI-PVRVKNSYNPN 369 (456)
Q Consensus 309 V~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~I-pv~I~n~~~p~ 369 (456)
|+||++.+|+. ..+++++.+|+.+|...| ...|.|+ ++..|.+.|+ +++|.|+..|.
T Consensus 186 v~Gvl~~~~~~----s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~~~ 247 (265)
T COG0548 186 VPGVLDDKGDP----SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRVPH 247 (265)
T ss_pred CcccccCCCCc----eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCCcc
Confidence 99999987642 689999999999999987 4678886 7788899999 59999987764
No 60
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.87 E-value=1.2e-20 Score=185.89 Aligned_cols=212 Identities=20% Similarity=0.275 Sum_probs=146.6
Q ss_pred ceEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s--~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
.++|+|+|||.+.+ .+.++++++.|++..+...+++|++.|..... |...
T Consensus 31 ~~~ViKiGGSvitdk~~~~i~~la~~i~~~~~~~~vilV~GGG~~~r~----------------------------~~~~ 82 (262)
T cd04255 31 DLNVVKIGGQSIIDRGAEAVLPLVEEIVALRPEHKLLILTGGGTRARH----------------------------VYSI 82 (262)
T ss_pred CcEEEEeccceecCCcHHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH----------------------------HHHH
Confidence 35899999999964 57899999999876544455555544432210 1111
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
+..++. +....|++......+|+.++...|...|+++.. ..
T Consensus 83 ~~~~g~-------------------------~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i~----------~~---- 123 (262)
T cd04255 83 GLDLGM-------------------------PTGVLAKLGASVSEQNAEMLATLLAKHGGSKVG----------HG---- 123 (262)
T ss_pred HHHcCC-------------------------CchHHHHHHHHHHHHHHHHHHHHHHHcCCCccc----------cc----
Confidence 112222 222344555555678888887888888886521 11
Q ss_pred cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCC------ChhHHHHHHHHcCCceEEEeecCCcc
Q 012808 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG------SDLTATTIGKALGLQEIQVWKDVDGV 312 (456)
Q Consensus 239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGG------SD~tAa~lA~~L~A~~l~i~TDV~GV 312 (456)
+...+.+ +++.+.|||++|+.+.+ ..++++|+| +|++|+++|.+|+|+.+++|||||||
T Consensus 124 ------~~~~l~~-----lL~~g~vPVi~g~~~~~----~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGV 188 (262)
T cd04255 124 ------DLLQLPT-----FLKAGRAPVISGMPPYG----LWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGL 188 (262)
T ss_pred ------cHHHHHH-----HHHCCCeEEEeCCcCCC----eeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCee
Confidence 1122222 35788999999987643 345566666 99999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCC--CCEEEecCCCCC---------CCceEE
Q 012808 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGD--IPVRVKNSYNPN---------APGTLI 375 (456)
Q Consensus 313 ~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~--Ipv~I~n~~~p~---------~~GT~I 375 (456)
|++||+.+|+|++|++++++|+.++.. +..+|...+...++.++ +|++|.|+.+|+ ..||+|
T Consensus 189 y~~dP~~~~~a~~i~~i~~~~~~~~~~-~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~i 261 (262)
T cd04255 189 YTADPKKNKKAEFIPEISAAELLKKDL-DDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTII 261 (262)
T ss_pred ECCCCCCCCCCeEccEeCHHHHHHHhc-CCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceEe
Confidence 999999999999999999999888752 23346666555555333 699999987774 357776
No 61
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.86 E-value=2.2e-20 Score=183.69 Aligned_cols=221 Identities=20% Similarity=0.288 Sum_probs=158.7
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHHh
Q 012808 83 CVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDEL 162 (456)
Q Consensus 83 ~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l 162 (456)
.|+||||+.+.+. +++++.|+.. +. ++|+|+++|...+.+++. +
T Consensus 1 ~VIKlGGs~l~~~---~~~~~~i~~l-g~-~~VlVHGgg~~i~~~~~~-------------------------------~ 44 (257)
T cd04251 1 IVVKIGGSVVSDL---DKVIDDIANF-GE-RLIVVHGGGNYVNEYLKR-------------------------------L 44 (257)
T ss_pred CEEEEChHHhhCh---HHHHHHHHHc-CC-CEEEECCCHHHHHHHHHH-------------------------------c
Confidence 4899999999864 5677777765 33 477888888766665541 1
Q ss_pred CCCHHHHHHHHHHHHHHH---HHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC---
Q 012808 163 GIDRSIIATHLEELEQLL---KGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--- 236 (456)
Q Consensus 163 ~~~~~~i~~~~~~L~~ll---~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~--- 236 (456)
+++.. +. +|+. .+-.+++..+.+..-.+.+|..+++ .|+++|++++++++.+.++++.+..
T Consensus 45 gi~~~-----------~~~~~~G~~-~Rvt~~~~l~~~~~a~~~ln~~iv~-~L~~~Gi~a~~l~~~~~~~~~~~~~~~~ 111 (257)
T cd04251 45 GVEPK-----------FVTSPSGIR-SRYTDKETLEVFVMVMGLINKKIVA-RLHSLGVKAVGLTGLDGRLLEAKRKEIV 111 (257)
T ss_pred CCCcE-----------EEeCCCCCc-cccCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceecccccCCEEEEEEeecc
Confidence 22111 11 1210 0123456666664444899999776 8999999999999999877765432
Q ss_pred -------------CC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCce
Q 012808 237 -------------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQE 302 (456)
Q Consensus 237 -------------~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~ 302 (456)
+. .++...+.+.+.. +++.+.|||+++|. .+ .+|++++++ +|++|+.+|.+|+|++
T Consensus 112 ~~~~~~~~~~~d~~~~G~v~~v~~~~i~~-----ll~~g~vpVi~~~~-~~-~~G~~~~i~---~D~~A~~lA~~L~A~~ 181 (257)
T cd04251 112 RVNERGRKMIIRGGYTGKVEKVNSDLIEA-----LLDAGYLPVVSPVA-YS-EEGEPLNVD---GDRAAAAIAAALKAER 181 (257)
T ss_pred cccccCcccccCCcceEEEEEEcHHHHHH-----HHhCCCeEEEeCcE-EC-CCCcEEecC---HHHHHHHHHHHcCCCE
Confidence 11 2343334443332 35788999999864 44 478888887 9999999999999999
Q ss_pred EEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHH--HHHHHHhCCC-CEEEecCCCCC
Q 012808 303 IQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDI-PVRVKNSYNPN 369 (456)
Q Consensus 303 l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~I-pv~I~n~~~p~ 369 (456)
++|||||+|||++ ++++++++++|+.++...-...|.|+ ++..+.++++ .++|.++..|+
T Consensus 182 li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~ 244 (257)
T cd04251 182 LILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADS 244 (257)
T ss_pred EEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCcc
Confidence 9999999999973 78999999999999986555677775 7777888888 58898887765
No 62
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.85 E-value=4.4e-20 Score=183.91 Aligned_cols=170 Identities=16% Similarity=0.227 Sum_probs=128.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcC
Q 012808 193 SRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGK 272 (456)
Q Consensus 193 ~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~ 272 (456)
.+..+.++|+..-..++...|..+|+++ .|+ ++|.++|.+.+. +.+..+.+. .+++.|.|||++|+-..
T Consensus 93 ~~qa~aa~gq~~L~~~y~~~f~~~~~~~-----~q~-llt~~d~~~~~~----~~~~~~~l~-~lL~~g~iPVi~~nD~v 161 (284)
T cd04256 93 DGRACAAVGQSGLMALYEAMFTQYGITV-----AQV-LVTKPDFYDEQT----RRNLNGTLE-ELLRLNIIPIINTNDAV 161 (284)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHcCCcH-----HHe-eeeccccccHHH----HHHHHHHHH-HHHHCCCEEEEeCCCcc
Confidence 3566788999999999999999999875 566 888888887643 233344333 35788999999863221
Q ss_pred CC-----CCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHH-----cCC
Q 012808 273 AW-----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY-----FGA 342 (456)
Q Consensus 273 ~~-----~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~-----~Ga 342 (456)
.. ++|+.. ...+++|+.|+.+|..++|+.++++|||||||++||+ .|++++|++++..|..+++. .|.
T Consensus 162 ~~~~~~~~~~~~~-~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gt 239 (284)
T cd04256 162 SPPPEPDEDLQGV-ISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGT 239 (284)
T ss_pred ccccccccccccc-ccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCccc
Confidence 10 011110 1125799999999999999999999999999999997 69999999999988766643 245
Q ss_pred CcchHH--HHHHHHhCCCCEEEecCCCCC---------CCceEE
Q 012808 343 QVLHPQ--SMRPAREGDIPVRVKNSYNPN---------APGTLI 375 (456)
Q Consensus 343 ~vlhp~--a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I 375 (456)
..|.|| ++..+.++|++++|.|+..|+ ..||+|
T Consensus 240 GGM~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~ 283 (284)
T cd04256 240 GGMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFF 283 (284)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEe
Confidence 789885 888899999999999987764 467776
No 63
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.84 E-value=4e-20 Score=205.11 Aligned_cols=236 Identities=17% Similarity=0.282 Sum_probs=164.0
Q ss_pred cceEEEEeCccccCCHH------HHHHHHHHHHcC--CCCCcEEEEc---CCCcCchHHHHhhHHHHhcCCCccchHHHH
Q 012808 80 QLTCVMKFGGSSLASAE------RMREVAELILSF--PNERPVIVLS---AMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s~~------~~~~va~iI~~~--~~~~~vvVVS---A~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l 148 (456)
...+|+|||||++.+.+ .+.++++.|... .+.+.|+|+| |+|..+..+.+....
T Consensus 7 ~~~iViKiGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~--------------- 71 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNS--------------- 71 (715)
T ss_pred CCEEEEEeCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccc---------------
Confidence 36799999999998764 899999998853 2345677788 566555443321100
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccce
Q 012808 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI 228 (456)
Q Consensus 149 ~~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~ 228 (456)
+.. ...+..+...+..+.+.|+..-..+....+...++.+ .++
T Consensus 72 --------------~~~------------------~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~i~~-----aQ~ 114 (715)
T TIGR01092 72 --------------SFA------------------DLQKPQPELDGKACAAVGQSGLMALYETMFTQLDITA-----AQI 114 (715)
T ss_pred --------------ccc------------------ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCee-----EEE
Confidence 000 0000112223344556676666666777777777765 556
Q ss_pred eEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCC---------ChhHHHHHHHHcC
Q 012808 229 GFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG---------SDLTATTIGKALG 299 (456)
Q Consensus 229 ~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGG---------SD~tAa~lA~~L~ 299 (456)
++|.++|.+.+. +.+..+.+. .+++.|.|||+.+ ||.+++.++++ +|++|+++|.+|+
T Consensus 115 -Llt~~d~~~~~~----~~~~~~~l~-~lL~~g~iPVin~-------nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~ 181 (715)
T TIGR01092 115 -LVTDLDFRDEQF----RRQLNETVH-ELLRMNVVPVVNE-------NDAVSTRAAPYSDSQGIFWDNDSLAALLALELK 181 (715)
T ss_pred -EechhhcccHHH----HHHHHHHHH-HHHHCCCEEEEcC-------CCcccccccccccccceecchHHHHHHHHHHcC
Confidence 888888776543 233333333 3568899999965 45667777654 6999999999999
Q ss_pred CceEEEeecCCccccCCCCCCCCCccccccCHHHHH-HHHH-----cCCCcchH--HHHHHHHhCCCCEEEecCCCCC--
Q 012808 300 LQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA-ELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN-- 369 (456)
Q Consensus 300 A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~-eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~-- 369 (456)
|+.++++|||||||++||+ .|++++|++++..+.. +++. .+...|.| +++..+.++|++++|.|+.+|+
T Consensus 182 Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l 260 (715)
T TIGR01092 182 ADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNI 260 (715)
T ss_pred CCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCCCcchH
Confidence 9999999999999999996 6999999999876554 3322 23567887 5888999999999999987763
Q ss_pred -------CCceEEeeccCC
Q 012808 370 -------APGTLIRRSRDM 381 (456)
Q Consensus 370 -------~~GT~I~~~~~~ 381 (456)
..||+|.+...|
T Consensus 261 ~~~l~g~~~GT~~~~~~~~ 279 (715)
T TIGR01092 261 TKVVEGKKVGTLFHEDAHL 279 (715)
T ss_pred HHHhcCCCCceEecccchh
Confidence 469999765443
No 64
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.82 E-value=1.1e-18 Score=171.92 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=123.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCC
Q 012808 194 RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKA 273 (456)
Q Consensus 194 ~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~ 273 (456)
+..+.+.|+..-..++...|.++|+++.. + ++|..++.+.. .+.+..+.+. .+++.+.|||+.|.-..
T Consensus 72 ~qa~aaiGq~~L~~~y~~~f~~~~~~~aq-----i-Llt~~d~~~~~----~~~n~~~~l~-~lL~~g~VPIinend~~- 139 (264)
T PTZ00489 72 KQALASMGQPLLMHMYYTELQKHGILCAQ-----M-LLAAYDLDSRK----RTINAHNTIE-VLISHKVIPIINENDAT- 139 (264)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCCCeEEE-----e-eeeccccccch----hhHHHHHHHH-HHHHCCCEEEECCCCCc-
Confidence 45566778877777888999999998743 3 45555554321 2223333343 35688999999872111
Q ss_pred CCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcc---ccccCHHHHHHHH----HcCCCcch
Q 012808 274 WRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKP---VPYLTFDEAAELA----YFGAQVLH 346 (456)
Q Consensus 274 ~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~---i~~ls~~Ea~eLa----~~Ga~vlh 346 (456)
..++. -.|++|..|+++|..++|+.++|+|||||||++||+.+|+|++ ++++++++..... ..|...|.
T Consensus 140 -~~~e~---~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~ 215 (264)
T PTZ00489 140 -ALHEL---VFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIV 215 (264)
T ss_pred -cccee---EeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChH
Confidence 01122 2457999999999999999999999999999999999999998 7889988764432 23456777
Q ss_pred HH--HHHHHHhCCCCEEEecCCCCC-----------CCceEEeec
Q 012808 347 PQ--SMRPAREGDIPVRVKNSYNPN-----------APGTLIRRS 378 (456)
Q Consensus 347 p~--a~~~a~~~~Ipv~I~n~~~p~-----------~~GT~I~~~ 378 (456)
+| ++..+.++|++++|.|+.+|+ ..||+|.+.
T Consensus 216 ~Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 216 TKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeec
Confidence 65 889999999999999987663 268888653
No 65
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.82 E-value=1.2e-18 Score=173.93 Aligned_cols=229 Identities=21% Similarity=0.404 Sum_probs=172.3
Q ss_pred cceEEEEeCccccCCH------HHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHH
Q 012808 80 QLTCVMKFGGSSLASA------ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s~------~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~ 152 (456)
.+.+|.|+|-|++.++ +.+..+++.|.+.. ..+.||+||.+. +. + +.
T Consensus 6 ~~riVvKiGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGA-ia-----a-------G~------------- 59 (369)
T COG0263 6 ARRIVVKIGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGA-IA-----A-------GR------------- 59 (369)
T ss_pred ceEEEEEECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccch-hh-----h-------Ch-------------
Confidence 3679999999998763 56777777776543 345577776322 11 0 10
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEe
Q 012808 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (456)
Q Consensus 153 ~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit 232 (456)
..|+.+. +...-..++.+.+.|+..-.......|..+|++.- |+ ++|
T Consensus 60 -------~~Lg~~~--------------------rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v~-----Qi-LLT 106 (369)
T COG0263 60 -------TRLGLPK--------------------RPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKVG-----QI-LLT 106 (369)
T ss_pred -------hhcCCCC--------------------CCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCeee-----EE-Eee
Confidence 1233221 11223456778899999999999999999999863 55 778
Q ss_pred ecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceee--ccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vtt--lgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
.+++.+-+ .|.+.+..+.. |++.|.|||| | +|+.+.+ +-.|++|..++++|...+||.++++||+|
T Consensus 107 r~D~~~r~----ry~Nar~Tl~~-Ll~~gvVPII------N-ENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiD 174 (369)
T COG0263 107 RDDFSDRR----RYLNARNTLSA-LLELGVVPII------N-ENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDID 174 (369)
T ss_pred hhhhhhHH----HHHHHHHHHHH-HHHCCceeee------c-CCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccC
Confidence 77766542 45666666654 5788999999 5 3666655 67899999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchHH--HHHHHHhCCCCEEEecCCCCC---------CCc
Q 012808 311 GVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN---------APG 372 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~--~Ea~eLa~-----~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~---------~~G 372 (456)
|+||+||+.+|+|++|+++.- .|...++. +|...|..| |.+.|.++|+|+.|.|+.+|+ ..|
T Consensus 175 GLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~G 254 (369)
T COG0263 175 GLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVG 254 (369)
T ss_pred cccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHHhCCCCc
Confidence 999999999999999999873 46666664 466688765 899999999999999999875 579
Q ss_pred eEEeecc
Q 012808 373 TLIRRSR 379 (456)
Q Consensus 373 T~I~~~~ 379 (456)
|++.+..
T Consensus 255 T~F~~~~ 261 (369)
T COG0263 255 TLFEPQA 261 (369)
T ss_pred cEEecCC
Confidence 9998653
No 66
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.74 E-value=1.4e-16 Score=167.58 Aligned_cols=234 Identities=15% Similarity=0.159 Sum_probs=158.2
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
.+.|+|+||+.+.++ .+..+++.|..... ..++|+|++.|..-+++++
T Consensus 18 ~~~ViK~GG~~~~~~-~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~------------------------------ 66 (429)
T TIGR01890 18 KTFVVGLGGELVEGG-NLGNIVADIALLHSLGVRLVLVHGARPQIERILA------------------------------ 66 (429)
T ss_pred CEEEEEEChhhccCc-cHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHH------------------------------
Confidence 579999999999875 34677777765432 2345666666655544443
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEE-----ecccceeEEeec
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQ-----YDAFDIGFITTD 234 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~-----ld~~~~~iit~~ 234 (456)
.++++++ +.+|++++ ++.+.+.+......+|..|.+. |++. +++.. +.+.+.++++..
T Consensus 67 -~~g~~~~-----------~~~G~RvT---~~~~l~~~~~~~g~vn~~l~~~-l~~~-~~~~~~~~~~l~~~dg~~~~a~ 129 (429)
T TIGR01890 67 -ARGRTPH-----------YHRGLRVT---DEASLEQAQQAAGTLRLAIEAR-LSMS-LSNTPMAGSRLPVVSGNFVTAR 129 (429)
T ss_pred -HcCCCce-----------eeCCcccC---CHHHHHHHHHHhChHHHHHHHH-HHhc-CCcccccccCceEccceEEEEE
Confidence 2333332 45676654 4455555433333668776654 6555 44333 455555566533
Q ss_pred --------CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEE
Q 012808 235 --------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (456)
Q Consensus 235 --------~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i 305 (456)
+++. .++...+.+.+.. +++.+.+||+++ +|.+ .+|+..+++ +|..|+.||.+|+|+++++
T Consensus 130 ~~~~~~~~~~g~~G~v~~v~~~~l~~-----ll~~g~ipvi~p-i~~~-~~g~~~nvn---aD~~A~~lA~al~a~kli~ 199 (429)
T TIGR01890 130 PIGVIEGVDYEHTGVIRKIDTEGIRR-----QLDAGSIVLLSP-LGHS-PTGETFNLD---MEDVATSVAISLKADKLIY 199 (429)
T ss_pred ECCCCcCccccccceEEEEcHHHHHH-----HHHCCCeEEECC-cccC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEE
Confidence 2333 2555555544443 357789999988 7777 489999999 9999999999999999999
Q ss_pred eecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCc-chHH--HHHHHHhCCC-CEEEecCCCCC----------CC
Q 012808 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQV-LHPQ--SMRPAREGDI-PVRVKNSYNPN----------AP 371 (456)
Q Consensus 306 ~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~v-lhp~--a~~~a~~~~I-pv~I~n~~~p~----------~~ 371 (456)
+|||+|||+. +.++|++|+.+|+.++....... +.|+ ++..|.+.|+ +++|.++..|+ ..
T Consensus 200 ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~ 273 (429)
T TIGR01890 200 FTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGI 273 (429)
T ss_pred EeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCC
Confidence 9999999963 36789999999999887543233 3676 6667788896 69999986553 47
Q ss_pred ceEEeec
Q 012808 372 GTLIRRS 378 (456)
Q Consensus 372 GT~I~~~ 378 (456)
||.|..+
T Consensus 274 GT~i~~d 280 (429)
T TIGR01890 274 GTSISKE 280 (429)
T ss_pred cceEecc
Confidence 9999874
No 67
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.70 E-value=8.1e-16 Score=150.66 Aligned_cols=212 Identities=18% Similarity=0.278 Sum_probs=143.2
Q ss_pred EEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808 84 VMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (456)
Q Consensus 84 V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (456)
|.|+||+.+.+. +.++++.|.... +.++ |+|++.|..-+.+++ +
T Consensus 2 ViKiGG~~~~~~--l~~~~~di~~l~~~g~~~-VlVHGgg~~i~~~~~-------------------------------~ 47 (248)
T cd04252 2 VIKVGGAIIEDD--LDELAASLSFLQHVGLYP-IVVHGAGPQLNEELE-------------------------------A 47 (248)
T ss_pred EEEEChhhhhcc--HHHHHHHHHHHHHCCCcE-EEEeCCCHHHHHHHH-------------------------------H
Confidence 899999999874 677777776542 3355 555555554444433 2
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEee-----cC
Q 012808 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT-----DD 235 (456)
Q Consensus 162 l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~-----~~ 235 (456)
++++.. +.+|++++ ++...+.+ .+++ .+|..+++. |+++|++++.+.+. +++. .+
T Consensus 48 ~gi~~~-----------~~~g~RvT---~~~~l~~v~~al~-~vn~~iv~~-l~~~g~~a~~l~~~---~~~a~~~~~~d 108 (248)
T cd04252 48 AGVEPE-----------YVDGLRVT---DPETLAVARKVFL-EENLKLVEA-LERNGARARPITSG---VFEAEYLDKDK 108 (248)
T ss_pred cCCCcE-----------eeCCcccC---CHHHHHHHHHHHH-HHHHHHHHH-HHhCCCCcccccCc---eEEEEECcCcc
Confidence 233322 33444433 34444444 4556 778887765 89999999999874 2332 23
Q ss_pred CCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808 236 FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (456)
Q Consensus 236 ~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (456)
|+. .++...+.+.++. +++.+.|||++| +|.+ .+|++.+++ +|..|+.+|.+|+|++++|+|||+|||+
T Consensus 109 ~g~~G~v~~i~~~~i~~-----~L~~g~IPVi~p-~~~~-~~g~~~nvn---aD~~A~~lA~aL~a~kli~ltdv~GV~~ 178 (248)
T cd04252 109 YGLVGKITGVNKAPIEA-----AIRAGYLPILTS-LAET-PSGQLLNVN---ADVAAGELARVLEPLKIVFLNETGGLLD 178 (248)
T ss_pred CCccCceeeECHHHHHH-----HHHCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCeEEEEECCcccCC
Confidence 433 2454455544443 357899999998 6776 478888998 9999999999999999999999999996
Q ss_pred CCCCCCCCCccccccCH-HHHHHHHHcCC--CcchHH--HHHHHHhC--C-CCEEEec
Q 012808 315 CDPNIHPHAKPVPYLTF-DEAAELAYFGA--QVLHPQ--SMRPAREG--D-IPVRVKN 364 (456)
Q Consensus 315 aDP~~v~~Ak~i~~ls~-~Ea~eLa~~Ga--~vlhp~--a~~~a~~~--~-Ipv~I~n 364 (456)
. +.+++++++. +++.++...|. ..|.|| ++..+.+. + ..++|.+
T Consensus 179 ~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~ 230 (248)
T cd04252 179 G------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS 230 (248)
T ss_pred C------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4 3578999997 57777876552 467776 44455555 3 4577765
No 68
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.70 E-value=7.7e-16 Score=153.38 Aligned_cols=224 Identities=19% Similarity=0.249 Sum_probs=145.9
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
.+.|+|+||+.+.++ .++++++.|..... ..++|+|++.|..-+++++
T Consensus 19 ~~~VIKlGG~ai~~~-~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~------------------------------ 67 (280)
T cd04237 19 KTFVIAFGGEAVAHP-NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLA------------------------------ 67 (280)
T ss_pred CEEEEEEChHHhcCc-hHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHH------------------------------
Confidence 579999999999774 45666666665432 2334455555554443332
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEeccc-----ceeEEee
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAF-----DIGFITT 233 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~-----~~~iit~ 233 (456)
.+++++ ++.+|++.+ ++...+.+ .++|+. +..| .+.|+. |++++.+.+. +..++..
T Consensus 68 -~~gi~~-----------~~~~G~RvT---~~~~l~~~~~~~g~v-~~~l-~~~l~~-~~~a~~~~~~~~~~~~~~~v~~ 129 (280)
T cd04237 68 -ERGLEP-----------RYHRGLRIT---DAAALECVKEAAGAV-RLEI-EALLSM-GLPNSPMAGARIRVVSGNFVTA 129 (280)
T ss_pred -HcCCCc-----------cccCCcCcC---CHHHHHHHHHHHHHH-HHHH-HHHHHh-hccccCcCCCceEEecCeEEEE
Confidence 122222 133454433 34444444 344544 6665 445655 8887654332 2222333
Q ss_pred cC--------CCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEE
Q 012808 234 DD--------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (456)
Q Consensus 234 ~~--------~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~ 304 (456)
.. ++. .++...+.+.+. .+++.+.+||+++ +|.+ .+|+..+++ +|..|+.||.+|+|++++
T Consensus 130 ~~~~~~~~~~~g~~G~v~~v~~~~i~-----~lL~~g~ipv~~~-~g~~-~~g~~lnvn---aD~~A~~LA~~L~a~klv 199 (280)
T cd04237 130 RPLGVVDGVDFGHTGEVRRIDADAIR-----RQLDQGSIVLLSP-LGYS-PTGEVFNLS---MEDVATAVAIALKADKLI 199 (280)
T ss_pred EECCcccCceEeeeccEEEEcHHHHH-----HHHHCCCEEEECC-ceEC-CCCCEEeeC---HHHHHHHHHHHcCCCEEE
Confidence 21 111 233333443333 3457788999987 6666 478998888 899999999999999999
Q ss_pred EeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCC---CcchHH--HHHHHHhCCC-CEEEecCCCCC
Q 012808 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA---QVLHPQ--SMRPAREGDI-PVRVKNSYNPN 369 (456)
Q Consensus 305 i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga---~vlhp~--a~~~a~~~~I-pv~I~n~~~p~ 369 (456)
|+|||||||+. +.+++++++.+|+.++...|. ..|.|| ++..+.++++ +++|.+...|+
T Consensus 200 ~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~~ 264 (280)
T cd04237 200 FLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARLLQAAIEACRGGVPRVHLISYAEDG 264 (280)
T ss_pred EEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 99999999973 368899999999999987764 578887 6667778899 69999987663
No 69
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.69 E-value=3.5e-16 Score=165.16 Aligned_cols=233 Identities=19% Similarity=0.243 Sum_probs=153.6
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
.++|+|+||+.+.+++ ++++++.|..... ..++|+|++.|..-+++++
T Consensus 26 ~~~VIk~GG~~l~~~~-~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~------------------------------ 74 (441)
T PRK05279 26 KTFVIMLGGEAIAHGN-FSNIVHDIALLHSLGIRLVLVHGARPQIEEQLA------------------------------ 74 (441)
T ss_pred CEEEEEECchhccChh-HHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH------------------------------
Confidence 5799999999998753 5677777665432 2345555555554444432
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEeccccee-----EEee
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIG-----FITT 233 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~-----iit~ 233 (456)
.+++++ ++.+|++++ ++.+.+.+ .++| .++..|. +.|+ .|++++.+.+..+. ++..
T Consensus 75 -~~g~~~-----------~~~~G~RvT---~~~~l~~~~~~~g-~v~~~l~-~~l~-~g~~a~~~~~~~~~~~~~~~~~~ 136 (441)
T PRK05279 75 -ARGIEP-----------RYHKGLRVT---DAAALECVKQAAG-ELRLDIE-ARLS-MGLPNTPMAGAHIRVVSGNFVTA 136 (441)
T ss_pred -HcCCCc-----------eecCCcccC---CHHHHHHHHHHHH-HHHHHHH-HHHh-ccCCCCcccCCcceEeeccEEEE
Confidence 122222 134565544 34444443 3346 6777764 4565 49988776544321 2221
Q ss_pred c--------CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEE
Q 012808 234 D--------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (456)
Q Consensus 234 ~--------~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~ 304 (456)
. +++. .++...+.+.+. .+++.|.|||+++ ++.+ .+|++.+++ +|..|+.||.+|+|++++
T Consensus 137 ~~~~~~~~~~~g~~G~v~~v~~~~i~-----~ll~~g~ipV~~~-i~~~-~~g~~~ni~---~D~~a~~lA~~l~a~~lv 206 (441)
T PRK05279 137 RPLGVDDGVDYQHTGEVRRIDAEAIR-----RQLDSGAIVLLSP-LGYS-PTGESFNLT---MEEVATQVAIALKADKLI 206 (441)
T ss_pred EECCCCCCccccceeeEEEEeHHHHH-----HHHHCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 1 2222 233333333333 3467889999965 6766 478888888 999999999999999999
Q ss_pred EeecCCccccCCCCCCCCCccccccCHHHHHHHHH---cC--CCcchHH--HHHHHHhCCC-CEEEecCCCCC-------
Q 012808 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY---FG--AQVLHPQ--SMRPAREGDI-PVRVKNSYNPN------- 369 (456)
Q Consensus 305 i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~---~G--a~vlhp~--a~~~a~~~~I-pv~I~n~~~p~------- 369 (456)
|+|||+|||+. ++++|++++.+|+.++.. .| ...|-|| ++..+.++++ +++|.++..|+
T Consensus 207 ~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~ 280 (441)
T PRK05279 207 FFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELF 280 (441)
T ss_pred EEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHh
Confidence 99999999953 478999999999998876 33 3578886 5556677899 69999876653
Q ss_pred ---CCceEEeec
Q 012808 370 ---APGTLIRRS 378 (456)
Q Consensus 370 ---~~GT~I~~~ 378 (456)
..||.|..+
T Consensus 281 ~~~g~GT~i~~~ 292 (441)
T PRK05279 281 TRDGIGTMIVME 292 (441)
T ss_pred cCCCCceEEecC
Confidence 479999875
No 70
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.69 E-value=1.2e-15 Score=150.67 Aligned_cols=207 Identities=11% Similarity=0.091 Sum_probs=149.2
Q ss_pred CCcceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHH
Q 012808 78 EKQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (456)
Q Consensus 78 ~~~~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~ 155 (456)
..+.+.|+|+||+.+.+++.+..++..|.-.. +.++|+|+.++..++..|. .
T Consensus 33 ~~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~---~----------------------- 86 (271)
T cd04236 33 DWPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS---D----------------------- 86 (271)
T ss_pred CCCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc---C-----------------------
Confidence 45688999999999999999999998887543 4577777765443333221 0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec-
Q 012808 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (456)
Q Consensus 156 ~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~- 234 (456)
. .......++ . ..|..|. ..|++.|++++++.+.. ++++..
T Consensus 87 --------~-------------------------~~~~~~~v~--~-~~n~~Lv-~~L~~~G~~A~gl~g~~-~~i~a~~ 128 (271)
T cd04236 87 --------L-------------------------ELQAARSRL--V-KDCKTLV-EALQANSAAAHPLFSGE-SVLQAEE 128 (271)
T ss_pred --------C-------------------------cchheehhH--H-HHHHHHH-HHHHhCCCCeeeecCcc-ceEEEEE
Confidence 0 000011111 1 3455544 56889999999998874 466543
Q ss_pred --CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808 235 --DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (456)
Q Consensus 235 --~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (456)
+++. .++..++.+.++. +++.|.|||+++ +|.+ .+|++.+++ +|..|+.+|.+|+|++++++||++|
T Consensus 129 ~~d~g~vG~V~~Vd~~~I~~-----lL~~g~IPVisp-lg~~-~~G~~~NiN---aD~~A~~lA~aL~A~KLIfltd~~G 198 (271)
T cd04236 129 PEPGASKGPSVSVDTELLQW-----CLGSGHIPLVCP-IGET-SSGRSVSLD---SSEVTTAIAKALQPIKVIFLNRSGG 198 (271)
T ss_pred cccCCccceEEEECHHHHHH-----HHhCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 2222 2454555554443 357899999999 8888 589999999 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCH-HHHHHHHHcCC--Ccc---hHH--HHHHHHhCCCCEEEec
Q 012808 312 VLTCDPNIHPHAKPVPYLTF-DEAAELAYFGA--QVL---HPQ--SMRPAREGDIPVRVKN 364 (456)
Q Consensus 312 V~taDP~~v~~Ak~i~~ls~-~Ea~eLa~~Ga--~vl---hp~--a~~~a~~~~Ipv~I~n 364 (456)
||+. +.++|++|+. +|..+|...|. ..| -|+ ++..+...+..++|.+
T Consensus 199 V~~~------~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~ 253 (271)
T cd04236 199 LRDQ------KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS 253 (271)
T ss_pred eECC------CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC
Confidence 9973 2578999995 99999988763 455 454 6667788899999887
No 71
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.68 E-value=7.2e-16 Score=155.76 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=87.6
Q ss_pred hccccCCceEEEcCC--CcCCCCCCceeecc-CCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCH
Q 012808 255 GDWITDLAIPIVTGF--LGKAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF 331 (456)
Q Consensus 255 ~~ll~~~~VpVv~Gf--ig~~~~~G~vttlg-RGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~ 331 (456)
..+++.+.|||++|. ++....++.+.+.. -+.+|..|+.+|.+|+|++++++|||||||++|| .|++++|+++++
T Consensus 179 ~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~--~~~a~~i~~i~~ 256 (314)
T PRK12353 179 KTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFG--KPNQKKLDEVTV 256 (314)
T ss_pred HHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC--CCCCeECcCcCH
Confidence 345688999999975 22211233332211 3558999999999999999999999999999766 389999999999
Q ss_pred HHHHHHHHc---CCCcchHH--HH-HHH-HhCCCCEEEecCCC------CCCCceEEe
Q 012808 332 DEAAELAYF---GAQVLHPQ--SM-RPA-REGDIPVRVKNSYN------PNAPGTLIR 376 (456)
Q Consensus 332 ~Ea~eLa~~---Ga~vlhp~--a~-~~a-~~~~Ipv~I~n~~~------p~~~GT~I~ 376 (456)
+|+.++... +...|.|+ ++ +.+ .+.+++++|.|..+ .+ .||+|.
T Consensus 257 ~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~~~~i~~~l~g~-~GT~i~ 313 (314)
T PRK12353 257 SEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITSLEKAKEALEGK-AGTVIV 313 (314)
T ss_pred HHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECCchHHHHHhCCC-CCeEec
Confidence 999988743 45678885 44 445 47789999987422 22 688884
No 72
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.66 E-value=2.4e-15 Score=143.07 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=95.8
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCC
Q 012808 190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGF 269 (456)
Q Consensus 190 ~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gf 269 (456)
++...|++..++-.+|+.+++..+...++ .+..++... +..+.+||+.++
T Consensus 50 ~~~~ad~mgilat~~na~~l~~~~~~~~~-------------------------~~~~~~~~~-----~~~g~ipV~~P~ 99 (203)
T cd04240 50 SDAAAHWMAILAMEQYGYLLADLEPRLVA-------------------------RTLAELTDV-----LERGKIAILLPY 99 (203)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccCCcccc-------------------------CCHHHHHHH-----HHCCCcEEEeCc
Confidence 45667888888888888876532211110 012233332 356789999775
Q ss_pred Cc---CCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcch
Q 012808 270 LG---KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346 (456)
Q Consensus 270 ig---~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlh 346 (456)
-- .+ ..++..++. +|..|+.+|..|+|+.+++.|||||||++| ++++++++++|+.+ ..+++
T Consensus 100 ~~~~~~~-~~~~~~~~t---tD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i~~i~~~e~~~-----~~~id 164 (203)
T cd04240 100 RLLLDTD-PLPHSWEVT---SDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLVNEIAAAELLG-----ETSVD 164 (203)
T ss_pred hhhcccC-CCCcccccC---HHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCccccCHHHhCC-----CCeeh
Confidence 21 01 122233333 899999999999999999999999999865 89999999987643 56777
Q ss_pred HHHHHHHHhCCCCEEEecCCCCC
Q 012808 347 PQSMRPAREGDIPVRVKNSYNPN 369 (456)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n~~~p~ 369 (456)
+-+.+.+.++++|++|.|+.+|+
T Consensus 165 ~~~~~~~~~~gi~v~I~~g~~~~ 187 (203)
T cd04240 165 PAFPRLLTKYGIRCYVVNGDDPE 187 (203)
T ss_pred hhHHHHHHhCCCeEEEECCCCcc
Confidence 76777889999999999988774
No 73
>PLN02825 amino-acid N-acetyltransferase
Probab=99.63 E-value=1.4e-14 Score=154.53 Aligned_cols=196 Identities=16% Similarity=0.200 Sum_probs=137.3
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
.+.|+||||+.+.++ .+..++..|.... +.++|+|+ +.+..-|++++
T Consensus 18 ktfVIk~gG~~l~~~-~~~~l~~DialL~~lGi~~VlVH-GggpqI~~~l~----------------------------- 66 (515)
T PLN02825 18 STFVVVISGEVVAGP-HLDNILQDISLLHGLGIKFVLVP-GTHVQIDKLLA----------------------------- 66 (515)
T ss_pred CEEEEEECchhhcCc-hHHHHHHHHHHHHHCCCCEEEEc-CCCHHHHHHHH-----------------------------
Confidence 579999999999887 6888888877542 34555555 55554444443
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHH--------HHHHcCCce----EEeccc
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAA--------YLNKIGVKA----RQYDAF 226 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~--------~L~~~Gi~a----~~ld~~ 226 (456)
+++++++ +.+|++++. +.+.+.+....-.++..|.+. .|+++|+++ ..+...
T Consensus 67 --~~gi~~~-----------f~~G~RVTd---~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~ 130 (515)
T PLN02825 67 --ERGREPK-----------YVGAYRITD---SAALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVA 130 (515)
T ss_pred --HcCCCce-----------eeCCcccCC---HHHHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEec
Confidence 1223221 445555543 444444433344567776654 489999999 777777
Q ss_pred ceeEEeec--------CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHH
Q 012808 227 DIGFITTD--------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA 297 (456)
Q Consensus 227 ~~~iit~~--------~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~ 297 (456)
+.++++.. +|+. .+|..++...++. +++.|.|||++. +|.+ .+|++.+++ +|..|+.+|.+
T Consensus 131 ~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~-----~L~~g~Ipvisp-lg~s-~~Ge~~Nin---aD~vA~avA~a 200 (515)
T PLN02825 131 SGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKE-----RLDSNCIVLLSN-LGYS-SSGEVLNCN---TYEVATACALA 200 (515)
T ss_pred cCcEEEEEECCCCcCccccceeeEEEEcHHHHHH-----HHhCCCeEEECC-ceEC-CCCCEEeeC---HHHHHHHHHHH
Confidence 77778774 3333 2455555544443 467899999998 7888 589999999 99999999999
Q ss_pred cCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHc
Q 012808 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF 340 (456)
Q Consensus 298 L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~ 340 (456)
|+|++++++||++ +++. +.+++++|+.+|+.+|...
T Consensus 201 L~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~~ 236 (515)
T PLN02825 201 IGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIRK 236 (515)
T ss_pred cCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHHh
Confidence 9999999999977 5542 3578999999999988653
No 74
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.62 E-value=8.3e-15 Score=147.69 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=69.4
Q ss_pred ChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcC---CCcchHH--HHHHHHhCC-CCE
Q 012808 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG---AQVLHPQ--SMRPAREGD-IPV 360 (456)
Q Consensus 287 SD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G---a~vlhp~--a~~~a~~~~-Ipv 360 (456)
.|..|+.+|.+|+|++++|+|||+|||..+|+ |++++|++++.+|+.++...| ...|-|+ ++..+.+.+ .++
T Consensus 216 aD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~--~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v 293 (316)
T PRK12352 216 KDLSTALLAREIHADILVITTGVEKVCIHFGK--PQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEV 293 (316)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCchhhccCCCC--CCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeE
Confidence 89999999999999999999999999987654 678899999999999998754 3468885 443444555 579
Q ss_pred EEecCC------CCCCCceEEee
Q 012808 361 RVKNSY------NPNAPGTLIRR 377 (456)
Q Consensus 361 ~I~n~~------~p~~~GT~I~~ 377 (456)
+|.+.. +.+ .||+|..
T Consensus 294 ~I~~~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 294 IITTPECLPAALRGE-TGTHIIK 315 (316)
T ss_pred EEcchHHHHHHHcCC-CCeEEEe
Confidence 988632 222 7898864
No 75
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.60 E-value=4.1e-14 Score=142.39 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=85.1
Q ss_pred ccccCCceEEEcCC--CcCCCCCCceeec-cCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHH
Q 012808 256 DWITDLAIPIVTGF--LGKAWRTCAITTL-GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (456)
Q Consensus 256 ~ll~~~~VpVv~Gf--ig~~~~~G~vttl-gRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~ 332 (456)
.+++.|.++|.+|. ++.-.++|.+... -.+..|..|+++|..|+||.++++|||||||++ | ..|++++|++++++
T Consensus 177 ~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~-~-~~p~a~~i~~it~~ 254 (310)
T TIGR00746 177 TLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN-Y-GKPDEKALREVTVE 254 (310)
T ss_pred HHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC-C-CCCCCcCCcCcCHH
Confidence 35677876666643 3331134443211 124689999999999999999999999999996 4 35899999999999
Q ss_pred HHHHHHH---cCCCcchHH---HHHHHHhCCCCEEEecCC------CCCCCceEEe
Q 012808 333 EAAELAY---FGAQVLHPQ---SMRPAREGDIPVRVKNSY------NPNAPGTLIR 376 (456)
Q Consensus 333 Ea~eLa~---~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~------~p~~~GT~I~ 376 (456)
|+.++.. ++...|.|| |++.+.+.+++++|.|.. +.+ .||+|.
T Consensus 255 e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 255 ELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLENAVEALEGK-AGTRVT 309 (310)
T ss_pred HHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEechHHHHHHHCCC-CCcEEe
Confidence 9999874 455678775 446666677899998732 123 688885
No 76
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.56 E-value=1e-13 Score=139.04 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=87.3
Q ss_pred ccccCCceEEEcCCCcCCC--CCCceeecc-CCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHH
Q 012808 256 DWITDLAIPIVTGFLGKAW--RTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (456)
Q Consensus 256 ~ll~~~~VpVv~Gfig~~~--~~G~vttlg-RGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~ 332 (456)
.+++.+.|||+.|--|... .+|...+.. -...|++|+++|..|+|+.++++|||||||+.+| .|++++|++++++
T Consensus 176 ~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~i~~Is~~ 253 (308)
T cd04235 176 TLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKALEQVTVE 253 (308)
T ss_pred HHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeEcCCcCHH
Confidence 3568899999987422211 122222110 2346999999999999999999999999999654 4899999999999
Q ss_pred HHHHHHH---cCCCcchHH---HHHHHHhCCCCEEEecCCCC-----CCCceEE
Q 012808 333 EAAELAY---FGAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLI 375 (456)
Q Consensus 333 Ea~eLa~---~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I 375 (456)
|+.++.. +++..|+|| +++.+.+.+++++|.+..+- ...||+|
T Consensus 254 e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~~~~i~~aL~G~~GT~I 307 (308)
T cd04235 254 ELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITSLENAEAALEGKAGTVI 307 (308)
T ss_pred HHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECCHHHHHHHHCCCCCeEE
Confidence 9999985 566789998 67777777789999764220 1258876
No 77
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.51 E-value=8.7e-13 Score=126.01 Aligned_cols=156 Identities=21% Similarity=0.190 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeec
Q 012808 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (456)
Q Consensus 203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttl 282 (456)
.++.. ++..|.+.|++++...|... .+. +.++.......+.. +++.+.|||+.|-+-.+..+| ...+
T Consensus 81 ~L~~~-V~~~l~~~Gv~av~~~P~s~--~~~----~gr~~~~~l~~i~~-----~l~~gfvPvl~GDVv~d~~~g-~~Ii 147 (252)
T COG1608 81 ELNSI-VVDALLDAGVRAVSVVPISF--STF----NGRILYTYLEAIKD-----ALEKGFVPVLYGDVVPDDDNG-YEII 147 (252)
T ss_pred HHHHH-HHHHHHhcCCccccccCcce--eec----CCceeechHHHHHH-----HHHcCCEeeeecceEEcCCCc-eEEE
Confidence 34444 45678899999986666553 221 12222111122222 357899999999765543223 2223
Q ss_pred cCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcC-CC---cch--HHHHHHHHhC
Q 012808 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG-AQ---VLH--PQSMRPAREG 356 (456)
Q Consensus 283 gRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G-a~---vlh--p~a~~~a~~~ 356 (456)
. .|-.+..||..|+++++.|.|||||||+.||.++|+++.+.++...++ +..-+ .. .|- -+++....+.
T Consensus 148 S---GDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~--~~gs~~~DVTGGi~~Kl~~~~~~~~~ 222 (252)
T COG1608 148 S---GDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVA--LGGSGGTDVTGGIAKKLEALLEIARY 222 (252)
T ss_pred e---ccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhh--hcCcCcccchhhHHHHHHHHHHHHhc
Confidence 3 599999999999999999999999999999999999999888765432 21111 11 233 3466666777
Q ss_pred CCCEEEecCCCCC---------CCceEEe
Q 012808 357 DIPVRVKNSYNPN---------APGTLIR 376 (456)
Q Consensus 357 ~Ipv~I~n~~~p~---------~~GT~I~ 376 (456)
+-++++.|+..|+ ..||+|.
T Consensus 223 ~~~vyi~ng~~~~ni~~~l~G~~vGT~I~ 251 (252)
T COG1608 223 GKEVYIFNGNKPENIYRALRGENVGTRID 251 (252)
T ss_pred CceEEEECCCCHHHHHHHhcCCCCceEec
Confidence 7889999987664 6788885
No 78
>PRK12686 carbamate kinase; Reviewed
Probab=99.48 E-value=2.1e-12 Score=129.77 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=86.6
Q ss_pred hccccCCceEEEcCCCc--CCCCCCceeecc-CCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCH
Q 012808 255 GDWITDLAIPIVTGFLG--KAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF 331 (456)
Q Consensus 255 ~~ll~~~~VpVv~Gfig--~~~~~G~vttlg-RGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~ 331 (456)
+.|++.|.|||.+|--| .-.++|.+.... -+..|..|+.||.+|+|+.++|+|||+|||+ ||. .|++++|++++.
T Consensus 177 ~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~-~~~-~p~ak~I~~I~~ 254 (312)
T PRK12686 177 RTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFI-NFN-KPNQQKLDDITV 254 (312)
T ss_pred HHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhcc-CCC-CCCCeECCccCH
Confidence 34567899999876522 211244433332 3568999999999999999999999999999 565 488999999999
Q ss_pred HHHHHHHHc---CCCcchHH--HHHHHHh--CCCCEEEecCCCC-----CCCceEEe
Q 012808 332 DEAAELAYF---GAQVLHPQ--SMRPARE--GDIPVRVKNSYNP-----NAPGTLIR 376 (456)
Q Consensus 332 ~Ea~eLa~~---Ga~vlhp~--a~~~a~~--~~Ipv~I~n~~~p-----~~~GT~I~ 376 (456)
+|+.++... +...|.|| ++..+.+ .+.+++|.+..+. ...||+|.
T Consensus 255 ~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~~~~i~~aL~G~~GT~I~ 311 (312)
T PRK12686 255 AEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITSLEQAKEALAGNAGTHIT 311 (312)
T ss_pred HHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeCchHHHHHhCCCCCeEEe
Confidence 999998754 44679887 4444443 3578888874321 12688884
No 79
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.41 E-value=2.5e-12 Score=133.84 Aligned_cols=109 Identities=21% Similarity=0.345 Sum_probs=79.5
Q ss_pred ccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCH-HHHHH
Q 012808 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF-DEAAE 336 (456)
Q Consensus 258 l~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~-~Ea~e 336 (456)
++.|.|||+++ +|.+ .+|++.+++ +|..|+.+|.+|+|++++++|||+|||+.| .+++++|+. +|...
T Consensus 126 L~~g~IPVlsp-lg~~-~~G~~~Nvn---aD~vA~~LA~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~~e~~~ 194 (398)
T PRK04531 126 LRAGSIPVIAS-LGET-PSGQILNIN---ADVAANELVSALQPYKIIFLTGTGGLLDAD------GKLISSINLSTEYDH 194 (398)
T ss_pred HHCCCEEEEeC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCCC------CCCcccCCHHHHHHH
Confidence 56889999987 5666 479988898 999999999999999999999999999743 678999996 57777
Q ss_pred HHHcCC--CcchHH--HHHHHHhCCCC-EEEecCCCC----------CCCceEEeec
Q 012808 337 LAYFGA--QVLHPQ--SMRPAREGDIP-VRVKNSYNP----------NAPGTLIRRS 378 (456)
Q Consensus 337 La~~Ga--~vlhp~--a~~~a~~~~Ip-v~I~n~~~p----------~~~GT~I~~~ 378 (456)
|...|. ..|.|+ ++..+.+ ++| +.+.....| +..||+|...
T Consensus 195 l~~~~~vtgGM~~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g 250 (398)
T PRK04531 195 LMQQPWINGGMKLKLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRRG 250 (398)
T ss_pred HHhcCCCCccHHHHHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEecC
Confidence 765432 456665 4444443 333 332222222 3479999764
No 80
>PRK12354 carbamate kinase; Reviewed
Probab=99.41 E-value=4.5e-12 Score=126.91 Aligned_cols=121 Identities=20% Similarity=0.175 Sum_probs=86.1
Q ss_pred hccccCCceEEEcCCCcCC--C-CCCceeecc-CCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccC
Q 012808 255 GDWITDLAIPIVTGFLGKA--W-RTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (456)
Q Consensus 255 ~~ll~~~~VpVv~Gfig~~--~-~~G~vttlg-RGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls 330 (456)
..|++.+.|||.+|.=|.. . .+|...... -.+.|.+|+.||..|+|+.++|+|||||||++++ .|++++|++++
T Consensus 169 ~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~i~~it 246 (307)
T PRK12354 169 RWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRAIAQAT 246 (307)
T ss_pred HHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeECCCCC
Confidence 3456788887776532221 1 113222111 3468999999999999999999999999999754 48899999999
Q ss_pred HHHHHHHHHcCCCcchHH---HHHHHHhCCCCEEEecCCCC-----CCCceEEeec
Q 012808 331 FDEAAELAYFGAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIRRS 378 (456)
Q Consensus 331 ~~Ea~eLa~~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~~~ 378 (456)
++|+.++ .++...|.|| +++.+.+.+.+++|.+..+. ...||+|.+.
T Consensus 247 ~~e~~~~-~f~~GgM~pKV~AA~~~~~~gg~~viI~~~~~l~~al~G~~GT~I~~~ 301 (307)
T PRK12354 247 PDELREL-GFAAGSMGPKVEAACEFVRATGKIAGIGSLEDIQAILAGEAGTRISPE 301 (307)
T ss_pred HHHHHhh-CCCcCChHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCCCceEEecC
Confidence 9999988 6777889987 44555566667888643210 1369999764
No 81
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.38 E-value=3.6e-11 Score=120.80 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=85.5
Q ss_pred ccccCCceEEEcCCCc--CCCCCCceeecc-CCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHH
Q 012808 256 DWITDLAIPIVTGFLG--KAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (456)
Q Consensus 256 ~ll~~~~VpVv~Gfig--~~~~~G~vttlg-RGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~ 332 (456)
.+++.+.|||++|.-| .-..+|++.++. -...|.+|+.+|..|+||+++|+|||||||+. |+ .|++++|++++++
T Consensus 180 ~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i~~It~~ 257 (313)
T PRK12454 180 ALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPLDKVTVE 257 (313)
T ss_pred HHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEccccCHH
Confidence 3567899999987422 111345443322 23479999999999999999999999999985 43 5789999999999
Q ss_pred HHHHHHHc---CCCcchHH---HHHHHHhCCCCEEEecCCCC-----CCCceEEe
Q 012808 333 EAAELAYF---GAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIR 376 (456)
Q Consensus 333 Ea~eLa~~---Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~ 376 (456)
|+.++... +...|.|| +++.+.+.+.+++|.+..+. ...||+|.
T Consensus 258 e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~~~~i~~aL~G~~GT~I~ 312 (313)
T PRK12454 258 EAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIASLEKAVEALEGKTGTRII 312 (313)
T ss_pred HHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECchHHHHHHHCCCCCeEeC
Confidence 99888753 34568885 44555556678888753221 12688885
No 82
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.33 E-value=1.5e-11 Score=116.64 Aligned_cols=159 Identities=16% Similarity=0.273 Sum_probs=112.9
Q ss_pred HHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCC
Q 012808 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT 276 (456)
Q Consensus 197 i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~ 276 (456)
+.+.|+-=-..+.-..+.++|+.. .++ ++|..++.+ +..+.++...+.+ |+.-+.|||+.- |
T Consensus 92 ~AAvGQ~~Lmalye~lF~Qy~~~i-----AQv-LvT~~Di~d----~~~r~Nl~~Ti~e-LL~m~viPIvNe-------N 153 (285)
T KOG1154|consen 92 CAAVGQSGLMALYETLFTQYGITI-----AQV-LVTRNDILD----EQQRKNLQNTISE-LLSMNVIPIVNE-------N 153 (285)
T ss_pred HHHhCcchHHHHHHHHHHHhccch-----hee-eecCcchhh----HHHHHHHHHHHHH-HHhCCceeeecC-------C
Confidence 444454444445666788999876 455 677665443 3345666666654 577899999943 4
Q ss_pred Cceee--ccCCC---ChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHH------HHHcCCCcc
Q 012808 277 CAITT--LGRGG---SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAE------LAYFGAQVL 345 (456)
Q Consensus 277 G~vtt--lgRGG---SD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~e------La~~Ga~vl 345 (456)
+.+.+ ..+|. +|..|+++|..++||.++++|||+|+||..|. ...+++++..+..+... -+..|...|
T Consensus 154 Davs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd-~~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM 232 (285)
T KOG1154|consen 154 DAVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPD-ADPSKLIHTFSPGDPQVSTTFGSKSKVGTGGM 232 (285)
T ss_pred CccCCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCC-CCcceeeeeeccCCCCCccccCccCccCcCcc
Confidence 43332 45666 89999999999999999999999999995444 34577888887766542 233455678
Q ss_pred hHH--HHHHHHhCCCCEEEecCCCCCCCceE
Q 012808 346 HPQ--SMRPAREGDIPVRVKNSYNPNAPGTL 374 (456)
Q Consensus 346 hp~--a~~~a~~~~Ipv~I~n~~~p~~~GT~ 374 (456)
..+ |+..|...|+++.|.|+..|+..++.
T Consensus 233 ~tKv~AA~~A~~~Gv~viI~~g~~p~~I~~i 263 (285)
T KOG1154|consen 233 ETKVKAAVNALNAGVSVIITNGDAPENITDI 263 (285)
T ss_pred hhhHHHHHHHhcCCceEEEeCCCChHHHHHH
Confidence 764 88899999999999999999854333
No 83
>PRK09411 carbamate kinase; Reviewed
Probab=99.19 E-value=1.2e-09 Score=108.85 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=83.2
Q ss_pred ccccCCceEEEcCC--CcCCC-CCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHH
Q 012808 256 DWITDLAIPIVTGF--LGKAW-RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (456)
Q Consensus 256 ~ll~~~~VpVv~Gf--ig~~~-~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~ 332 (456)
.|++++.|||.+|. ++... .+|...+.+ .|.+|+.||.+|+|+.++|+|||+|||..++ .|++++|++++.+
T Consensus 171 ~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vID---kD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I~~it~~ 245 (297)
T PRK09411 171 LLLKEGHVVICSGGGGVPVTEDGAGSEAVID---KDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAIRHATPD 245 (297)
T ss_pred HHHHCCCEEEecCCCCCCeEEcCCCeEEecC---HHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCCCCcCHH
Confidence 35678888888642 33221 124333344 7999999999999999999999999998643 5788999999999
Q ss_pred HHHHHHHcCCCcchHH---HHHHHHhCCCCEEEecCCCC-----CCCceEEe
Q 012808 333 EAAELAYFGAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIR 376 (456)
Q Consensus 333 Ea~eLa~~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~ 376 (456)
|+.++.. ....|.|| +++.+...+.+++|.+..+. ...||+|.
T Consensus 246 e~~~~~~-~~GgM~pKVeAA~~~v~~~g~~a~I~~l~~~~~~l~G~~GT~I~ 296 (297)
T PRK09411 246 ELAPFAK-ADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCIS 296 (297)
T ss_pred HHHHhcc-CCCCcHHHHHHHHHHHHhCCCeEEECChhHHHHHHCCCCCeEEe
Confidence 9977764 34568887 45667777889998763221 13588874
No 84
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=98.89 E-value=5.9e-08 Score=89.25 Aligned_cols=88 Identities=27% Similarity=0.332 Sum_probs=75.1
Q ss_pred CCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHh
Q 012808 276 TCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPARE 355 (456)
Q Consensus 276 ~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~ 355 (456)
.+++| ||..+..+|+.+++.++++.|||||||+.+|. ++++++|+..|... |-..++|-.=+.+.+
T Consensus 113 SW~VT------SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~----~~t~vD~~~P~Ll~k 178 (212)
T COG2054 113 SWEVT------SDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT----GETSVDPYLPKLLVK 178 (212)
T ss_pred ceeec------ccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc----CcccccchhhHHHHH
Confidence 45788 99999999999999999999999999998874 58999988766543 667889888888999
Q ss_pred CCCCEEEecCCCCC----------CCceEEee
Q 012808 356 GDIPVRVKNSYNPN----------APGTLIRR 377 (456)
Q Consensus 356 ~~Ipv~I~n~~~p~----------~~GT~I~~ 377 (456)
.++..+|.|+.+|+ .+||+|.+
T Consensus 179 ~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 179 YKMNCRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred cCCceEEECCCCHHHHHHHHhccccceEEEeC
Confidence 99999999999886 36777653
No 85
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.83 E-value=1e-08 Score=82.99 Aligned_cols=58 Identities=93% Similarity=1.286 Sum_probs=53.4
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCcHHHHh
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQ 452 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~~~l~~ 452 (456)
+++|+|.+.+|.+.||+++++|+.|+++||||+||++++.++||+|+.++.+.+.+++
T Consensus 1 ~~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~qs~~sISftV~~sd~~~~~~~~ 58 (78)
T cd04933 1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVATSEVSISLTLDPSKLWSRELIQ 58 (78)
T ss_pred CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEecCCEEEEEEEhhhhhhhhhHH
Confidence 4789999999999999999999999999999999999999999999999987655554
No 86
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.75 E-value=3.6e-08 Score=79.21 Aligned_cols=53 Identities=45% Similarity=0.606 Sum_probs=49.2
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
+++|+|.+.+|.+.||+++++|+.|+++||||+||++|+.++||+|+.++...
T Consensus 1 ~~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~s~~~iSftv~~~d~~~ 53 (75)
T cd04932 1 QTLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTSEISVALTLDNTGSTS 53 (75)
T ss_pred CEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEeecCCEEEEEEeccccch
Confidence 47899988899999999999999999999999999999999999999988553
No 87
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=98.69 E-value=3.2e-08 Score=76.66 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=49.6
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
+++|+++|.+|...||+++++|++|+++||++.++++||.+|+|+|++++...
T Consensus 1 ~~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~Se~~is~~v~~~~~~~ 53 (64)
T cd04937 1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADSHTTISCLVSEDDVKE 53 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEcCccEEEEEEcHHHHHH
Confidence 47899999999999999999999999999999999999999999999987643
No 88
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=98.61 E-value=9.1e-08 Score=74.65 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=51.2
Q ss_pred EecCeEEEEEEeCCCCC-chhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 391 LKRNVTMLDIVSTRMLG-QYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 391 ~~~nvalIsv~g~~m~~-~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
..++++.|+|.|.+|.. .||+++++|+.|+++||||.+++ |+.+++++|+++++..
T Consensus 2 ~~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-S~~~~~ilV~~~~~~~ 58 (65)
T PF13840_consen 2 IEEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-SEISISILVKEEDLEK 58 (65)
T ss_dssp EESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-ESSEEEEEEEGGGHHH
T ss_pred ccCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-EeeeEEEEEeHHHHHH
Confidence 46889999999999977 99999999999999999999999 9999999999988754
No 89
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.60 E-value=1.6e-07 Score=75.46 Aligned_cols=50 Identities=40% Similarity=0.728 Sum_probs=47.9
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCC
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d 444 (456)
+++|++.+.+|.+.+|+++++|++|+++||||+||++++.+++|+|+.++
T Consensus 1 ~~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~s~~~isftv~~~~ 50 (75)
T cd04935 1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVSTSETNVTVSLDPDP 50 (75)
T ss_pred CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEeCCCEEEEEEeCcc
Confidence 46899999999999999999999999999999999999999999999887
No 90
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=98.58 E-value=1.7e-07 Score=74.84 Aligned_cols=52 Identities=31% Similarity=0.507 Sum_probs=48.9
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW 446 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~ 446 (456)
++.|+|.+.+|.+.+|+++++|+.|+++|||++||++++.+++|+++.+++.
T Consensus 1 ~~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~s~~~isftv~~~~~~ 52 (73)
T cd04934 1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLISTSEVHVSMALHMENAE 52 (73)
T ss_pred CEEEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEeCCCEEEEEEehhhcC
Confidence 4689999999999999999999999999999999999999999999988764
No 91
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=98.57 E-value=1.7e-07 Score=74.97 Aligned_cols=51 Identities=63% Similarity=0.939 Sum_probs=48.6
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCc
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~ 445 (456)
+++|+++|.+|.+.+|+++++|+.|+++||+++++++|+.+|||+|++++.
T Consensus 1 ~~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s~~~is~~v~~~~~ 51 (75)
T cd04912 1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTSEVSVSLTLDPTKN 51 (75)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcCCcEEEEEEEchhh
Confidence 478999999999999999999999999999999999999999999999875
No 92
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=98.55 E-value=1.8e-07 Score=71.56 Aligned_cols=50 Identities=46% Similarity=0.645 Sum_probs=47.1
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW 446 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~ 446 (456)
.|+|.+.+|.+.+|+.+++|+.|+++||+++|+++++.+++|+++.++..
T Consensus 2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t~~~~is~~v~~~~~~ 51 (62)
T cd04890 2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPTSENSVTLYLDDSLLP 51 (62)
T ss_pred EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEecCCCEEEEEEehhhhh
Confidence 57899999999999999999999999999999999999999999988753
No 93
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=98.50 E-value=8.9e-06 Score=80.07 Aligned_cols=115 Identities=18% Similarity=0.233 Sum_probs=83.5
Q ss_pred HhhccccCCceEEEcCCCcCCCCCCceeeccCCC----------ChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCC
Q 012808 253 LHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG----------SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPH 322 (456)
Q Consensus 253 l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGG----------SD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~ 322 (456)
.++.|+++|.++|..|-= | +-+...++ -|+++++||..++||.++|+||||+||-.--+ |+
T Consensus 176 ~Ik~L~~~g~vVI~~GGG------G-IPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gk--p~ 246 (312)
T COG0549 176 AIKALLESGHVVIAAGGG------G-IPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGK--PN 246 (312)
T ss_pred HHHHHHhCCCEEEEeCCC------C-cceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCC--cc
Confidence 344456788888887621 2 11221111 39999999999999999999999999965432 67
Q ss_pred CccccccCHHHHHHHHHc---CCCcchHH---HHHHHHhCCCCEEEecCCCC-----CCCceEEe
Q 012808 323 AKPVPYLTFDEAAELAYF---GAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIR 376 (456)
Q Consensus 323 Ak~i~~ls~~Ea~eLa~~---Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~ 376 (456)
.+.|.+++.+|+.+.... ...-|-|| |+..++..|=+..|.+-.+- ...||.|.
T Consensus 247 q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~ItsLe~~~~~l~g~~GT~I~ 311 (312)
T COG0549 247 QQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITSLENAEAALEGKAGTVIV 311 (312)
T ss_pred chhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECcHHHHHHHhccCCCcEec
Confidence 899999999999887754 45678887 77788777788888764331 24688875
No 94
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.48 E-value=2.8e-07 Score=71.11 Aligned_cols=52 Identities=23% Similarity=0.500 Sum_probs=47.8
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW 446 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~ 446 (456)
+++|+++|.+|.+.+++.+++|+.|+++||+++|++ +|+.+++|++++++..
T Consensus 1 ~~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~~~ 54 (66)
T cd04919 1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKDAV 54 (66)
T ss_pred CeEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHH
Confidence 478999999999999999999999999999999997 4889999999988754
No 95
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=98.42 E-value=5e-07 Score=69.46 Aligned_cols=52 Identities=25% Similarity=0.431 Sum_probs=47.8
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW 446 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~ 446 (456)
+++|+++|.+|.+.+++.+++|+.|+++||+++|++ +|+.+++|+|++++..
T Consensus 1 ~~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~ 54 (66)
T cd04922 1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDAT 54 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHH
Confidence 478999999999999999999999999999999997 4889999999987754
No 96
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.33 E-value=9.3e-07 Score=68.73 Aligned_cols=51 Identities=18% Similarity=0.379 Sum_probs=46.5
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
++|+++|. +...+|+++++|++|+++||+|.|++ +|+.+|+|+|+++|...
T Consensus 2 a~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~ 54 (65)
T cd04918 2 SIISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEG 54 (65)
T ss_pred cEEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHH
Confidence 68999998 77889999999999999999999998 89999999999987643
No 97
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.33 E-value=1.1e-06 Score=67.55 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=48.1
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
+++|+++|.++.+.+++.+++|+.|+++||+++|++ .++.+++|+++.++..+
T Consensus 1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~ 55 (66)
T cd04924 1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWA 55 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHH
Confidence 478999999999999999999999999999999997 47899999999887644
No 98
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=98.32 E-value=9.9e-07 Score=68.93 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=46.9
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe--CCCEEEEEEcCCCcCc
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKLWS 447 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist--Se~sIsi~V~~~d~~~ 447 (456)
+++|+++|.+|. .+|+++++|++|++.||++.|+++ |+.+||++|+++|...
T Consensus 2 ~a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~ 55 (66)
T cd04915 2 VAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDN 55 (66)
T ss_pred EEEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHH
Confidence 689999999995 899999999999999999999986 6699999999887654
No 99
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=98.31 E-value=1.1e-06 Score=66.53 Aligned_cols=52 Identities=27% Similarity=0.468 Sum_probs=47.9
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
++|+++|.++.+.+++.+++|+.|+++||+++++++++.+++|+|+++|...
T Consensus 1 ~~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s~~~is~~v~~~d~~~ 52 (63)
T cd04936 1 AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTSEIKISCLIDEDDAEK 52 (63)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEccCceEEEEEeHHHHHH
Confidence 4689999999999999999999999999999999999999999999987644
No 100
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.30 E-value=1.2e-06 Score=66.36 Aligned_cols=52 Identities=27% Similarity=0.461 Sum_probs=47.9
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
++|+++|.++.+.+++.+++|+.|++++|+++++++++.+++|+|+.++...
T Consensus 1 ~~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s~~~is~~v~~~~~~~ 52 (63)
T cd04923 1 AKVSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTSEIKISCLVDEDDAEK 52 (63)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEccCCeEEEEEeHHHHHH
Confidence 3689999999999999999999999999999999999999999999887644
No 101
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=98.28 E-value=1.3e-06 Score=92.47 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=75.3
Q ss_pred cchHHHHHHHHhCCCCEEEecCCCCCCCc-eEEeeccCCc----------cceeeEEEEecCeEEEEEEeCCCCCchhHH
Q 012808 344 VLHPQSMRPAREGDIPVRVKNSYNPNAPG-TLIRRSRDMS----------KAVLTSIVLKRNVTMLDIVSTRMLGQYGFL 412 (456)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~G-T~I~~~~~~~----------~~~i~~I~~~~nvalIsv~g~~m~~~~g~~ 412 (456)
.+..+-+..+.+++|++-....... ..+ +...+..+.. ......+...+++++|+++|.+|.++||++
T Consensus 322 g~~a~vf~~l~~~~i~v~~I~q~~~-~~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~gm~~~~gva 400 (447)
T COG0527 322 GFAARVFGILAEAGINVDLITQSIS-EVSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLALVSIVGAGMRSNPGVA 400 (447)
T ss_pred cHHHHHHHHHHHcCCcEEEEEeccC-CCeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccccccCcCHH
Confidence 4455677778899998644322211 112 2222221100 001126788999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 413 AKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 413 akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
+++|++|+++||||.|+++||.+|||+|++++...
T Consensus 401 a~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~ 435 (447)
T COG0527 401 ARIFQALAEENINIIMISSSEISISFVVDEKDAEK 435 (447)
T ss_pred HHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHH
Confidence 99999999999999999999999999999988654
No 102
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.28 E-value=1.6e-06 Score=66.58 Aligned_cols=53 Identities=17% Similarity=0.325 Sum_probs=47.9
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe--CCCEEEEEEcCCCcCc
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKLWS 447 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist--Se~sIsi~V~~~d~~~ 447 (456)
+++|+++|.++...+++.+++|+.|+++||+++|+++ ++.+++|+|+.+|...
T Consensus 1 ~~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~ 55 (66)
T cd04916 1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADK 55 (66)
T ss_pred CeEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHH
Confidence 4789999999999999999999999999999999974 7899999999887543
No 103
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.22 E-value=1.4e-06 Score=67.33 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=48.0
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
++|+++|.+|...+|+++++|++|++.+|++.+..+|+.+|||+|+++|...
T Consensus 1 a~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~s~~~is~vv~~~d~~~ 52 (63)
T cd04920 1 AAVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAANDLNLTFVVDEDQADG 52 (63)
T ss_pred CEEEEECCCcccCccHHHHHHHHHhcCCceEEEEeCCCCeEEEEEeHHHHHH
Confidence 5799999999999999999999999999999888999999999999987643
No 104
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=98.20 E-value=5.4e-06 Score=87.94 Aligned_cols=104 Identities=16% Similarity=0.310 Sum_probs=77.4
Q ss_pred cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCC-----------ccceeeEEEEecCeEEEEEEeCCCCCchhHH
Q 012808 344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDM-----------SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFL 412 (456)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~-----------~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~ 412 (456)
.+-.+.+..+.+++|++.......++..=+......+. ....+++|++.+|+++|+++|.+|.+.||++
T Consensus 316 g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~VsvvG~~~~~~~g~~ 395 (441)
T TIGR00657 316 GFLARVFGALAEAGINVDLITQSSSETSISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVA 395 (441)
T ss_pred cHHHHHHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEEEEEEcCCCCCCCchH
Confidence 34456778889999987766421111100111121110 0134678999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 413 AKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 413 akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
+++|+.|+++||||+|+++|+.+|+|+|+.+|...
T Consensus 396 a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~ 430 (441)
T TIGR00657 396 SKIFEALAQNGINIEMISSSEINISFVVDEKDAEK 430 (441)
T ss_pred HHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHH
Confidence 99999999999999999999999999999887643
No 105
>PRK06635 aspartate kinase; Reviewed
Probab=98.11 E-value=7.7e-06 Score=85.64 Aligned_cols=104 Identities=20% Similarity=0.284 Sum_probs=79.2
Q ss_pred cchHHHHHHHHhCCCCEEEecCCCCCC--C-ceEEeeccCCc-------c----ceeeEEEEecCeEEEEEEeCCCCCch
Q 012808 344 VLHPQSMRPAREGDIPVRVKNSYNPNA--P-GTLIRRSRDMS-------K----AVLTSIVLKRNVTMLDIVSTRMLGQY 409 (456)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~--~-GT~I~~~~~~~-------~----~~i~~I~~~~nvalIsv~g~~m~~~~ 409 (456)
.+-.+.+..+.++||++...+...++. . =+......+.. + ..++.+++.+|+++++++|.+|.+.|
T Consensus 275 g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~~~~~~~~~~i~~~~~ia~isvvG~~~~~~~ 354 (404)
T PRK06635 275 GIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDIAKVSVVGVGMRSHP 354 (404)
T ss_pred cHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHHHHHHcCcceEEEcCCeEEEEEECCCCCCCc
Confidence 344467788899999988776654331 1 11222211100 0 13677999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 410 g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
|+++++|++|+++||||+++++|+.+++|+|+.+|...
T Consensus 355 g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~ 392 (404)
T PRK06635 355 GVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLEL 392 (404)
T ss_pred hHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHH
Confidence 99999999999999999999999999999999887643
No 106
>PRK06291 aspartate kinase; Provisional
Probab=98.11 E-value=1.1e-05 Score=86.30 Aligned_cols=103 Identities=17% Similarity=0.341 Sum_probs=77.1
Q ss_pred cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCc-----------cceeeEEEEecCeEEEEEEeCCCCCchhHH
Q 012808 344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS-----------KAVLTSIVLKRNVTMLDIVSTRMLGQYGFL 412 (456)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~-----------~~~i~~I~~~~nvalIsv~g~~m~~~~g~~ 412 (456)
.+..+.+..+.+++|++...+....+..=+...+..+.. ...++.|.+.+|+++|+++|.+|.+.+|++
T Consensus 336 g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~av~~L~~~~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gv~ 415 (465)
T PRK06291 336 GTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEKALKALRREFGEGLVRDVTFDKDVCVVAVVGAGMAGTPGVA 415 (465)
T ss_pred cHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHHHHHHHHHHHHHhcCcceEEeCCEEEEEEEcCCccCCcChH
Confidence 455677888899999987665321111001122221100 012567999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808 413 AKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW 446 (456)
Q Consensus 413 akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~ 446 (456)
+++|++|+++||+|.||+ +|+.+|||+|++++..
T Consensus 416 ~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~ 451 (465)
T PRK06291 416 GRIFSALGESGINIKMISQGSSEVNISFVVDEEDGE 451 (465)
T ss_pred HHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHH
Confidence 999999999999999998 8999999999988754
No 107
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=98.10 E-value=1.1e-05 Score=84.28 Aligned_cols=104 Identities=19% Similarity=0.287 Sum_probs=78.1
Q ss_pred cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCc-----------cceeeEEEEecCeEEEEEEeCCCCCchhHH
Q 012808 344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS-----------KAVLTSIVLKRNVTMLDIVSTRMLGQYGFL 412 (456)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~-----------~~~i~~I~~~~nvalIsv~g~~m~~~~g~~ 412 (456)
.+-.+.+..+.+++|++...+....+..=+.+.+..+.. ...+..+...+|+++|+++|.+|.+.||++
T Consensus 275 g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~d~~~a~~~L~~~~~~~~~~~i~~~~~~a~IsvVG~~~~~~~g~~ 354 (401)
T TIGR00656 275 GFLARIFGALAERNINVDLISQTPSETSISLTVDETDADEAVRALKDQSGAAGLDRVEVEEGLAKVSIVGAGMVGAPGVA 354 (401)
T ss_pred cHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCcccCccHH
Confidence 344567778889999988776533221112222221110 011356788999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 413 AKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 413 akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
+++|++|+++||||.++++|+.+|+|+|+++|...
T Consensus 355 a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~ 389 (401)
T TIGR00656 355 SEIFSALEEKNINILMIGSSETNISFLVDEKDAEK 389 (401)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHH
Confidence 99999999999999999999999999999988654
No 108
>PLN02551 aspartokinase
Probab=98.04 E-value=1.6e-05 Score=85.85 Aligned_cols=101 Identities=15% Similarity=0.230 Sum_probs=73.5
Q ss_pred cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCcc---------------ceeeEEEEecCeEEEEEEeCCCCCc
Q 012808 344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK---------------AVLTSIVLKRNVTMLDIVSTRMLGQ 408 (456)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~---------------~~i~~I~~~~nvalIsv~g~~m~~~ 408 (456)
.+..+-+..+.+++|+|....+.+ ... +......+... ..+..|.+.+++++|+++|. |...
T Consensus 381 g~~arvf~~l~~~~I~Vd~IssSe-~sI-s~~v~~~~~~~~~~i~~~l~~l~~el~~~~~V~v~~~vAiISvVG~-~~~~ 457 (521)
T PLN02551 381 GFLAKVFSTFEDLGISVDVVATSE-VSI-SLTLDPSKLWSRELIQQELDHLVEELEKIAVVNLLQGRSIISLIGN-VQRS 457 (521)
T ss_pred cHHHHHHHHHHHcCCcEEEEeccC-CEE-EEEEehhHhhhhhhHHHHHHHHHHHhhcCCeEEEeCCEEEEEEEcc-CCCC
Confidence 345566777888888877665432 111 11111111000 12357888999999999998 8889
Q ss_pred hhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 409 YGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 409 ~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
+|+++++|++|+++||||+||+ +|+.+||++|+++|...
T Consensus 458 ~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~ 498 (521)
T PLN02551 458 SLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQ 498 (521)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHH
Confidence 9999999999999999999998 78999999999987644
No 109
>PRK07431 aspartate kinase; Provisional
Probab=98.04 E-value=1.7e-05 Score=87.04 Aligned_cols=103 Identities=19% Similarity=0.224 Sum_probs=78.1
Q ss_pred chHHHHHHHHhCCCCEEEecCCCCCC--CceEEe---eccCCc-----------cceeeEEEEecCeEEEEEEeCCCCCc
Q 012808 345 LHPQSMRPAREGDIPVRVKNSYNPNA--PGTLIR---RSRDMS-----------KAVLTSIVLKRNVTMLDIVSTRMLGQ 408 (456)
Q Consensus 345 lhp~a~~~a~~~~Ipv~I~n~~~p~~--~GT~I~---~~~~~~-----------~~~i~~I~~~~nvalIsv~g~~m~~~ 408 (456)
+..+-+..+.+++|++-..+...+.. ..+.|+ +..+.. ......+.+.+++++|+++|.+|...
T Consensus 453 ~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i~~~~~va~VSvVG~gm~~~ 532 (587)
T PRK07431 453 MAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEVEDGPAIAKVSIVGAGMPGT 532 (587)
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCccCC
Confidence 34557788999999988776643322 112222 211100 11234578899999999999999999
Q ss_pred hhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 409 YGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 409 ~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
||+++|+|++|+++||++.++++|+.+|+|+|++++..+
T Consensus 533 ~gv~~ri~~aL~~~~I~v~~i~~S~~~Is~vV~~~~~~~ 571 (587)
T PRK07431 533 PGVAARMFRALADAGINIEMIATSEIRTSCVVAEDDGVK 571 (587)
T ss_pred cCHHHHHHHHHHHCCCcEEEeeccceEEEEEEeHHHHHH
Confidence 999999999999999999999999999999999887644
No 110
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=98.01 E-value=7.9e-06 Score=60.30 Aligned_cols=50 Identities=42% Similarity=0.661 Sum_probs=45.3
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCC--CEEEEEEcCCCc
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE--VSLSLTLDPSKL 445 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe--~sIsi~V~~~d~ 445 (456)
++|++.|.+|.+.+|+.+++|+.|++++|++++++++. .+++|+++.++.
T Consensus 1 ~~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v~~~~~ 52 (60)
T cd04868 1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDL 52 (60)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEEeHHHH
Confidence 36899999998999999999999999999999999876 889999988754
No 111
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=98.01 E-value=1.2e-05 Score=64.40 Aligned_cols=53 Identities=34% Similarity=0.522 Sum_probs=47.5
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
+++|+++|.+|.+.+++.+++|+.|++++|+++|++ +++.+++|+++.++...
T Consensus 1 ~~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~v~~~d~~~ 55 (80)
T cd04921 1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDADK 55 (80)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcceEEEEEeHHHHHH
Confidence 478999999999999999999999999999999997 46789999999877543
No 112
>PRK09034 aspartate kinase; Reviewed
Probab=97.99 E-value=1.2e-05 Score=85.68 Aligned_cols=62 Identities=15% Similarity=0.311 Sum_probs=57.4
Q ss_pred eeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 386 i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
+.+|++.+|+++|+++|.+|.+.+|+++++|++|+++||||+|++ +|+.+|||+|++++...
T Consensus 376 ~~~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~ 439 (454)
T PRK09034 376 PDELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEK 439 (454)
T ss_pred CceEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHH
Confidence 468999999999999999999999999999999999999999998 68999999999887543
No 113
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=97.97 E-value=1.4e-05 Score=60.15 Aligned_cols=52 Identities=27% Similarity=0.509 Sum_probs=46.3
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe--CCCEEEEEEcCCCcCc
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKLWS 447 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist--Se~sIsi~V~~~d~~~ 447 (456)
++|+++|.+|.+.+++.+++|+.|++++|+++++++ ++.+++|+++.++...
T Consensus 1 ~~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v~~~~~~~ 54 (65)
T cd04892 1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADK 54 (65)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCCCceeEEEEEeHHHHHH
Confidence 478999999999999999999999999999999987 4599999999877543
No 114
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.93 E-value=1.4e-05 Score=64.24 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=48.0
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
+.|++....|....||..|++++|+++||++++++|+.+++|++++++++..
T Consensus 2 ~~I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~PSGID~~Siii~~~~~~~ 53 (76)
T cd04911 2 CSIYISKYLMNREVGFGRKLLSILEDNGISYEHMPSGIDDISIIIRDNQLTD 53 (76)
T ss_pred ceEehhHhhccchhcHHHHHHHHHHHcCCCEeeecCCCccEEEEEEccccch
Confidence 4577788899999999999999999999999999999999999999997765
No 115
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.90 E-value=3.8e-05 Score=87.34 Aligned_cols=102 Identities=19% Similarity=0.288 Sum_probs=75.8
Q ss_pred chHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCc---------------cceeeEEEEecCeEEEEEEeCCCCCch
Q 012808 345 LHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS---------------KAVLTSIVLKRNVTMLDIVSTRMLGQY 409 (456)
Q Consensus 345 lhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~---------------~~~i~~I~~~~nvalIsv~g~~m~~~~ 409 (456)
+-.+.+..+.+++|++...+....+..=+...+..+.. ...++.|...+|+++|+++|.+|.+.+
T Consensus 331 ~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i~~~~~valIsvvG~gm~~~~ 410 (819)
T PRK09436 331 MASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENLAIISVVGDGMRTHP 410 (819)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCEEEEEEEccCcccCc
Confidence 34567788889999987665221111112222221100 012667999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808 410 GFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW 446 (456)
Q Consensus 410 g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~ 446 (456)
|+++++|++|++.||||.||+ +|+.+|||+|+++|..
T Consensus 411 gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~ 449 (819)
T PRK09436 411 GIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDAT 449 (819)
T ss_pred CHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHH
Confidence 999999999999999999998 8899999999998754
No 116
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=97.86 E-value=4.3e-05 Score=59.88 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=45.0
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc-HHHHhh
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS-RELIQQ 453 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~-~~l~~~ 453 (456)
+.|+|.+. .+.+|+++++|+.|+++||+|+||+.+..+++|+++.++... .+++++
T Consensus 2 ~~vtv~~~--~~~~~~~a~if~~La~~~InvDmI~~~~~~isFtv~~~d~~~~~~il~~ 58 (67)
T cd04914 2 TQIKVKAK--DNENDLQQRVFKALANAGISVDLINVSPEEVIFTVDGEVAEKAVDILEK 58 (67)
T ss_pred eEEEEecC--CCCccHHHHHHHHHHHcCCcEEEEEecCCCEEEEEchhhHHHHHHHHHH
Confidence 56788864 466999999999999999999999755448999999988755 555554
No 117
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.83 E-value=3.3e-05 Score=59.52 Aligned_cols=51 Identities=16% Similarity=0.356 Sum_probs=43.8
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
+++|+++|.+|.+.+++++++|++|++ ++|.+++ +|+.+|+|+|+++|...
T Consensus 1 ~alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~~s~~~is~~V~~~~~~~ 53 (64)
T cd04917 1 LALVALIGNDISETAGVEKRIFDALED--INVRMICYGASNHNLCFLVKEEDKDE 53 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEecCccEEEEEEeHHHHHH
Confidence 479999999999999999999999976 6666665 78999999999887543
No 118
>PRK05925 aspartate kinase; Provisional
Probab=97.75 E-value=0.00013 Score=77.36 Aligned_cols=97 Identities=9% Similarity=0.138 Sum_probs=72.4
Q ss_pred HHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCcc----------ceeeEEEEecCeEEEEEEeCCCCCchhHHHHHH
Q 012808 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK----------AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVF 416 (456)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~----------~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif 416 (456)
.+-+..+.++||++.+.++.. ... +......+..+ ..+..+...+++++|+++|.+|.+ +++++++|
T Consensus 316 ~~if~~l~~~~I~vd~i~s~~-~si-s~~i~~~~~~~~~~~~l~~~l~~~~~i~~~~~~a~VsvVG~gm~~-~~v~~~~~ 392 (440)
T PRK05925 316 EDVLGILRSLGIVPGLVMAQN-LGV-YFTIDDDDISEEYPQHLTDALSAFGTVSCEGPLALITMIGAKLAS-WKVVRTFT 392 (440)
T ss_pred HHHHHHHHHcCCcEEEEeccC-CEE-EEEEechhccHHHHHHHHHHhcCCceEEEECCEEEEEEeCCCccc-ccHHHHHH
Confidence 467788899999985553332 111 11112111100 123468889999999999999987 78999999
Q ss_pred HHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808 417 STFEDLGISVDVVATSEVSLSLTLDPSKLW 446 (456)
Q Consensus 417 ~~L~~~gI~V~~IstSe~sIsi~V~~~d~~ 446 (456)
++|++.||||.++++|+.+|||+|+++|..
T Consensus 393 ~aL~~~~Ini~~i~~s~~~is~vV~~~d~~ 422 (440)
T PRK05925 393 EKLRGYQTPVFCWCQSDMALNLVVNEELAV 422 (440)
T ss_pred HHHhhCCCCEEEEECCCceEEEEEehHHHH
Confidence 999999999999999999999999998754
No 119
>PRK08210 aspartate kinase I; Reviewed
Probab=97.75 E-value=5.1e-05 Score=79.58 Aligned_cols=102 Identities=20% Similarity=0.288 Sum_probs=76.8
Q ss_pred cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCcc--ce---e-eEEEEecCeEEEEEEeCCCCCchhHHHHHHH
Q 012808 344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK--AV---L-TSIVLKRNVTMLDIVSTRMLGQYGFLAKVFS 417 (456)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~--~~---i-~~I~~~~nvalIsv~g~~m~~~~g~~akif~ 417 (456)
.+..+-+..+.++||++...+... + .++..-...+..+ .. . ..+...+|+++|+++|.+|.+.||+++++|+
T Consensus 284 g~la~If~~L~~~~I~i~~i~~~~-~-~is~~v~~~~~~~a~~~l~~~~~~v~~~~~~a~isvvG~~~~~~~g~~~~i~~ 361 (403)
T PRK08210 284 DLQQEVFKALAEAGISVDFINIFP-T-EVVFTVSDEDSEKAKEILENLGLKPSVRENCAKVSIVGAGMAGVPGVMAKIVT 361 (403)
T ss_pred hHHHHHHHHHHHcCCeEEEEEecC-c-eEEEEEcHHHHHHHHHHHHHhCCcEEEeCCcEEEEEEcCCcCCCccHHHHHHH
Confidence 455567778899999987665443 2 2343333211110 00 0 1577889999999999999999999999999
Q ss_pred HHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 418 TFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 418 ~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
+|+++||+|.++++|+.+|+|+|++++...
T Consensus 362 aL~~~~I~i~~~~~s~~~is~vv~~~~~~~ 391 (403)
T PRK08210 362 ALSEEGIEILQSADSHTTIWVLVKEEDMEK 391 (403)
T ss_pred HHHhCCCCEEEEecCCCEEEEEEcHHHHHH
Confidence 999999999999999999999999987543
No 120
>PRK09181 aspartate kinase; Validated
Probab=97.66 E-value=6.5e-05 Score=80.41 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=68.9
Q ss_pred cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeecc-CC-c-------c-ceeeEEEEecCeEEEEEEeCCCCCchhHHH
Q 012808 344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSR-DM-S-------K-AVLTSIVLKRNVTMLDIVSTRMLGQYGFLA 413 (456)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~-~~-~-------~-~~i~~I~~~~nvalIsv~g~~m~~~~g~~a 413 (456)
.+..+-+..+.+++|++....+... .. +...... +. . + -....+.. +++++|+++|.+|. .+|+.+
T Consensus 344 g~~~~if~~l~~~~i~v~~i~ss~~-si-s~~v~~~~~~~~~~~~~L~~~~~~~~i~~-~~~a~VsvVG~gm~-~~gv~a 419 (475)
T PRK09181 344 GYDLEILEILTRHKVSYISKATNAN-TI-THYLWGSLKTLKRVIAELEKRYPNAEVTV-RKVAIVSAIGSNIA-VPGVLA 419 (475)
T ss_pred hHHHHHHHHHHHcCCeEEEEEecCc-EE-EEEEcCChHHHHHHHHHHHHhcCCceEEE-CCceEEEEeCCCCC-cccHHH
Confidence 3445666777888888765543221 11 1111111 00 0 0 01124554 99999999999994 899999
Q ss_pred HHHHHHHhCCCcEEEEEeC--CCEEEEEEcCCCcCc
Q 012808 414 KVFSTFEDLGISVDVVATS--EVSLSLTLDPSKLWS 447 (456)
Q Consensus 414 kif~~L~~~gI~V~~IstS--e~sIsi~V~~~d~~~ 447 (456)
++|++|++.||||.|++++ |.+||++|+++|...
T Consensus 420 k~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~ 455 (475)
T PRK09181 420 KAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEK 455 (475)
T ss_pred HHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHH
Confidence 9999999999999999865 999999999987653
No 121
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.58 E-value=0.0002 Score=81.28 Aligned_cols=102 Identities=8% Similarity=0.049 Sum_probs=75.3
Q ss_pred chHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC-Cc--------cceeeEEEEecCeEEEEEEeCCCCCchhHHHHH
Q 012808 345 LHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD-MS--------KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKV 415 (456)
Q Consensus 345 lhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~-~~--------~~~i~~I~~~~nvalIsv~g~~m~~~~g~~aki 415 (456)
+..+-+..+.+++|++...+....+ ....+.-..+ .. ......|.+.+++++|+++|.+|.+.+|+++++
T Consensus 333 ~~~~if~~l~~~~I~v~~i~~~~s~-~sis~~i~~~~~~~~~~~l~~~~~~~~i~v~~~~a~VsvVG~gm~~~~gv~~~~ 411 (810)
T PRK09466 333 AQKELDQLLKRAQLRPLAVGVHPDR-QLLQLAYTSEVADSALKLLDDAALPGELKLREGLALVALVGAGVTRNPLHCHRF 411 (810)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCC-cEEEEEEeHHHHHHHHHHHHhhcCCCcEEEeCCeEEEEEeCCCcccCccHHHHH
Confidence 3456777788999987766433211 1122221110 00 002256888999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 416 FSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 416 f~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
|++|++.||++.++++|+.+||++|+++|...
T Consensus 412 f~aL~~~~I~ii~~~~s~~sis~vV~~~d~~~ 443 (810)
T PRK09466 412 YQQLKDQPVEFIWQSEDGLSLVAVLRQGPTES 443 (810)
T ss_pred HHHHHhCCCcEEEEeCCCcEEEEEEehHHHHH
Confidence 99999999999999999999999999987543
No 122
>PRK08841 aspartate kinase; Validated
Probab=97.57 E-value=0.00011 Score=76.78 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=69.1
Q ss_pred HHHHHHHHhCCCCEEEecCCCCCCCce-EEeeccCCc---cceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhC
Q 012808 347 PQSMRPAREGDIPVRVKNSYNPNAPGT-LIRRSRDMS---KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDL 422 (456)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n~~~p~~~GT-~I~~~~~~~---~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~ 422 (456)
++.+..+.+++|++....... ... .+.+..+.. ......+...+|+++|+++|.+| ||+++++|++|+++
T Consensus 269 ~~i~~~l~~~~i~v~~i~~~~---~~~~~~v~~~~~~~~~~~~~~~i~~~~~~a~vsvVG~~~---~gv~~~~~~aL~~~ 342 (392)
T PRK08841 269 PSLTKQCQMLGIEVWNVIEEA---DRAQIVIKQDACAKLKLVFDDKIRNSESVSLLTLVGLEA---NGMVEHACNLLAQN 342 (392)
T ss_pred HHHHHHHHHcCCCEEEEEecC---CcEEEEECHHHHHHHHHhCcccEEEeCCEEEEEEECCCC---hHHHHHHHHHHHhC
Confidence 455667788899977665322 112 222222111 11223577889999999999864 99999999999999
Q ss_pred CCcEEEEEeCCCEEEEEEcCCCcC
Q 012808 423 GISVDVVATSEVSLSLTLDPSKLW 446 (456)
Q Consensus 423 gI~V~~IstSe~sIsi~V~~~d~~ 446 (456)
||++.++++|+.+|||+|+++|..
T Consensus 343 ~I~i~~i~~s~~~is~vv~~~~~~ 366 (392)
T PRK08841 343 GIDVRQCSTEPQSSMLVLDPANVD 366 (392)
T ss_pred CCCEEEEECCCcEEEEEEeHHHHH
Confidence 999999999999999999988654
No 123
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=97.47 E-value=0.00032 Score=80.45 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=75.6
Q ss_pred CcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCc--c----------ceeeEEEEecCeEEEEEEeCCCCCchh
Q 012808 343 QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS--K----------AVLTSIVLKRNVTMLDIVSTRMLGQYG 410 (456)
Q Consensus 343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~--~----------~~i~~I~~~~nvalIsv~g~~m~~~~g 410 (456)
..+..+-+..+.+++|+|....+.. ... |......+.. . ..+..+...+++++|+++|.+|.+.+|
T Consensus 336 ~g~~a~if~~la~~~I~Vd~I~sse-~si-s~~i~~~~~~~~~~~~~~l~~~l~~~~~i~~~~~va~ISvVG~gm~~~~g 413 (861)
T PRK08961 336 VGFLADVFTLFKKHGLSVDLISSSE-TNV-TVSLDPSENLVNTDVLAALSADLSQICRVKIIVPCAAVSLVGRGMRSLLH 413 (861)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEcCC-CEE-EEEEccccccchHHHHHHHHHHHhhcCcEEEeCCeEEEEEeCCCcccCcC
Confidence 4566677888899999987765432 111 2222211100 0 013457788999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808 411 FLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW 446 (456)
Q Consensus 411 ~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~ 446 (456)
+++++|++|++.||++.+..+|+.+|||+|+++|..
T Consensus 414 v~arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~ 449 (861)
T PRK08961 414 KLGPAWATFGAERVHLISQASNDLNLTFVIDESDAD 449 (861)
T ss_pred hHHHHHHHHhhcCeEEEECCCccccEEEEEeHHHHH
Confidence 999999999999888877789999999999998764
No 124
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.47 E-value=0.00016 Score=53.74 Aligned_cols=48 Identities=31% Similarity=0.462 Sum_probs=40.5
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCC-----CEEEEEEcCCCcC
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-----VSLSLTLDPSKLW 446 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe-----~sIsi~V~~~d~~ 446 (456)
+|+++| +.+.+|+++++|+.|+++||++++++++. .+++|++++++..
T Consensus 2 ~v~v~~--~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~~~~~ 54 (61)
T cd04891 2 QVTIKG--VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSDLE 54 (61)
T ss_pred EEEEec--CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeHHHHH
Confidence 577776 67889999999999999999999998643 7799999887653
No 125
>PRK09084 aspartate kinase III; Validated
Probab=97.37 E-value=0.00027 Score=75.27 Aligned_cols=100 Identities=11% Similarity=0.210 Sum_probs=69.7
Q ss_pred cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCc-------c------ceeeEEEEecCeEEEEEEeCCCCCchh
Q 012808 344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS-------K------AVLTSIVLKRNVTMLDIVSTRMLGQYG 410 (456)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~-------~------~~i~~I~~~~nvalIsv~g~~m~~~~g 410 (456)
.+-.+.+..+.+++|++...++.. ....-.|....... . ..+..+.+.+|+++|+++|.+|.+.||
T Consensus 321 g~~a~if~~l~~~~I~Vd~I~sse-~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~i~~~~~va~IsvvG~gm~~~~g 399 (448)
T PRK09084 321 GFLAEVFGILARHKISVDLITTSE-VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCRVEVEEGLALVALIGNNLSKACG 399 (448)
T ss_pred cHHHHHHHHHHHcCCeEEEEeccC-cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCeEEEECCeEEEEEECCCcccCcC
Confidence 344566777888888877665422 11111111111000 0 023578889999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808 411 FLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW 446 (456)
Q Consensus 411 ~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~ 446 (456)
+++++|++|++. ||.|++ +|+.+||++|+++|..
T Consensus 400 v~arif~aL~~~--nI~~I~qgsSe~sIS~vV~~~d~~ 435 (448)
T PRK09084 400 VAKRVFGVLEPF--NIRMICYGASSHNLCFLVPESDAE 435 (448)
T ss_pred hHHHHHHHHHhC--CeEEEEEcCCCCcEEEEEcHHHHH
Confidence 999999999874 666665 8999999999988754
No 126
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=97.29 E-value=0.00041 Score=53.86 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=41.8
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCcCc
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWS 447 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~~~ 447 (456)
+++|++++ +.+.+|+++++|+.|+++||++++++++ ..+++|+++.++...
T Consensus 1 ~~~v~v~~--~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~~d~~~ 56 (75)
T cd04913 1 QAKITLRG--VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDLKK 56 (75)
T ss_pred CeEEEECC--CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecHHHHHH
Confidence 36788865 6788999999999999999999999754 247999998876543
No 127
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=97.05 E-value=0.0021 Score=51.07 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=45.3
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCC
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d 444 (456)
..|.+.+.+|.|.+|+.+++|++|+++++++.+..+..++|+..+..+.
T Consensus 2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~ 50 (71)
T cd04910 2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTNANTITHYLAGSL 50 (71)
T ss_pred eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCH
Confidence 5679999999999999999999999999999999999999999997664
No 128
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.00025 Score=72.45 Aligned_cols=102 Identities=17% Similarity=0.319 Sum_probs=71.2
Q ss_pred CcchHHHHHHHHhCCCCEEEecC--------CCCCCCc--eEEeeccCC---ccceeeEEEEecCeEEEEEEeCCCCCch
Q 012808 343 QVLHPQSMRPAREGDIPVRVKNS--------YNPNAPG--TLIRRSRDM---SKAVLTSIVLKRNVTMLDIVSTRMLGQY 409 (456)
Q Consensus 343 ~vlhp~a~~~a~~~~Ipv~I~n~--------~~p~~~G--T~I~~~~~~---~~~~i~~I~~~~nvalIsv~g~~m~~~~ 409 (456)
-.+-.+-+....+.+|.|-+..+ .+|..-- -+|..+-+. .-..+-.+.+.+..++|+++|. |.+..
T Consensus 407 ~GFLAkvFti~ek~~isVDvvaTSEV~iSltL~~~~~~sreliq~~l~~a~eeL~ki~~vdll~~~sIiSLiGn-vq~ss 485 (559)
T KOG0456|consen 407 HGFLAKVFTIFEKLGISVDVVATSEVSISLTLDPSKLDSRELIQGELDQAVEELEKIAVVDLLKGRSIISLIGN-VQNSS 485 (559)
T ss_pred hhHHHHHHHHHHHhCcEEEEEEeeeEEEEEecChhhhhhHHHHHhhHHHHHHHHHHhhhhhhhccchHHhhhhh-hhhhh
Confidence 34444555667788887666544 2322110 012111000 0013556777899999999997 99999
Q ss_pred hHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCc
Q 012808 410 GFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (456)
Q Consensus 410 g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~ 445 (456)
|++.++|..|+++||||.||+ .|+++||++|++++.
T Consensus 486 ~i~~rmF~~l~e~giNvqMISQGAskvNIS~ivne~ea 523 (559)
T KOG0456|consen 486 GILERMFCVLAENGINVQMISQGASKVNISCIVNEKEA 523 (559)
T ss_pred HHHHHHHHHHHhcCcceeeeccccccceEEEEEChHHH
Confidence 999999999999999999999 579999999998754
No 129
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=96.19 E-value=0.03 Score=59.37 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHHHcCCceEEeccccee--EEeec--------CCCCc-ceeecchHHHHHHHhhccccCCceEEEcC
Q 012808 200 FGECMSTRIFAAYLNKIGVKARQYDAFDIG--FITTD--------DFTNA-DILEATYPAVAKRLHGDWITDLAIPIVTG 268 (456)
Q Consensus 200 ~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~--iit~~--------~~~~a-~i~~~~~~~i~~~l~~~ll~~~~VpVv~G 268 (456)
+||.--. ++ ..|+++|-.++..+....- +++.+ +|+.. ++...+.++++ ++++.|.+|++.-
T Consensus 171 ~~E~n~~-lv-~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~-----~l~~~G~mp~L~s 243 (520)
T KOG2436|consen 171 SLEANLN-LV-INLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIR-----HLLDAGSMPLLRS 243 (520)
T ss_pred hhhhhhH-HH-HHHHHhhceeccccccccccceeecccccccccceeeeecccceechhhhh-----hhhhCCCchhehh
Confidence 3555333 33 3478888877776654211 23333 23321 22233333333 3467899999987
Q ss_pred CCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHH
Q 012808 269 FLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELA 338 (456)
Q Consensus 269 fig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa 338 (456)
.+.+ ..|+++|.+ +|..|..+|.+|+++++++.+|+.=+...+| ..++.+..+|...+-
T Consensus 244 -la~T-aSGqvlnvN---a~~~a~elA~~L~~~kli~l~d~g~~l~e~g------e~~S~l~l~~e~~~l 302 (520)
T KOG2436|consen 244 -LAAT-ASGQVLNVN---ADEVAGELALALGPDKLILLMDKGRILKENG------EDISSLILQEEDAGL 302 (520)
T ss_pred -hccc-CccceEEee---HHHHhhHHHhccCcceeEEecccccccccCc------ccccccccchhHhhh
Confidence 6666 489999999 9999999999999999999999733444444 345666666655443
No 130
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=93.48 E-value=0.15 Score=38.42 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=24.3
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
+.+.||.+++++++|+++||||..+.
T Consensus 7 ~~drpG~l~~v~~~la~~~inI~~~~ 32 (66)
T PF01842_consen 7 VPDRPGILADVTEILADHGINIDSIS 32 (66)
T ss_dssp EETSTTHHHHHHHHHHHTTEEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHeE
Confidence 56899999999999999999999985
No 131
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.36 E-value=0.3 Score=38.09 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=34.6
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEeC---C--CEEEEEEcCCCcC
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVATS---E--VSLSLTLDPSKLW 446 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~IstS---e--~sIsi~V~~~d~~ 446 (456)
+.+.||.++++++.|+++|+|++++.++ + ..++|.++..+..
T Consensus 7 ~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~ 53 (76)
T cd04888 7 LEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN 53 (76)
T ss_pred ecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH
Confidence 3467999999999999999999999752 2 5588888877765
No 132
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=91.24 E-value=0.23 Score=41.14 Aligned_cols=47 Identities=13% Similarity=0.295 Sum_probs=37.8
Q ss_pred CeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC----CCEEEEEEcCC
Q 012808 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS----EVSLSLTLDPS 443 (456)
Q Consensus 394 nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS----e~sIsi~V~~~ 443 (456)
..++|+|.|. +.||+.+.++.+|+++|+||.=|+++ -.+.-+.|+-+
T Consensus 2 ~~avITV~Gk---Dr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~ 52 (90)
T COG3830 2 MRAVITVIGK---DRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS 52 (90)
T ss_pred ceEEEEEEcC---CCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC
Confidence 4578999984 58999999999999999999999854 35566666543
No 133
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=90.52 E-value=0.9 Score=34.81 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=34.1
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCc-CcHHHHhhh
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL-WSRELIQQA 454 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~-~~~~l~~~~ 454 (456)
+.+.||.++++.+.|+++||||+-+- ..+....+-++.++. .-.+.+++.
T Consensus 8 v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~~ 60 (66)
T cd04908 8 LENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKEA 60 (66)
T ss_pred EcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHHC
Confidence 66899999999999999999997663 222234555544554 335555543
No 134
>PRK04435 hypothetical protein; Provisional
Probab=90.01 E-value=1 Score=40.79 Aligned_cols=57 Identities=19% Similarity=0.411 Sum_probs=41.6
Q ss_pred cCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC---C--CEEEEEEcCCCcC-c-HHHHh
Q 012808 393 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS---E--VSLSLTLDPSKLW-S-RELIQ 452 (456)
Q Consensus 393 ~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS---e--~sIsi~V~~~d~~-~-~~l~~ 452 (456)
...+-|.+. +.+.||+++++++.|+++|+||+.|.++ + .+++|+|+..+.. + .+|++
T Consensus 67 ~r~vtL~i~---l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~ 130 (147)
T PRK04435 67 GKIITLSLL---LEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLE 130 (147)
T ss_pred CcEEEEEEE---EecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHH
Confidence 344455555 4568999999999999999999999752 2 5688888877764 3 44444
No 135
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=89.73 E-value=0.93 Score=36.55 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=35.4
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEEeCC------CEEEEEEcCCCcCcHHHHhh
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQ 453 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~IstSe------~sIsi~V~~~d~~~~~l~~~ 453 (456)
.+.||+++++...|+..|.||+-++.++ ..+++++..++-.=.++.+|
T Consensus 10 ~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQ 63 (76)
T PRK06737 10 HNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQ 63 (76)
T ss_pred ecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHH
Confidence 4799999999999999999999997442 46778876554333444443
No 136
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=88.63 E-value=1.2 Score=36.54 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEeCC------CEEEEEEc
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLD 441 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~IstSe------~sIsi~V~ 441 (456)
..+.||+++|+-..|.+.|+||+-++.++ ..++++++
T Consensus 9 VeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~ 51 (84)
T PRK13562 9 VADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD 51 (84)
T ss_pred EECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe
Confidence 34799999999999999999999997443 58889986
No 137
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=86.16 E-value=2.2 Score=36.00 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=31.6
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEeC------CCEEEEEEcC
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVATS------EVSLSLTLDP 442 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~IstS------e~sIsi~V~~ 442 (456)
..+.||+++++...|++.|.||+-++.+ -..+++++.+
T Consensus 15 v~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~ 58 (96)
T PRK08178 15 VRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND 58 (96)
T ss_pred EECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC
Confidence 3479999999999999999999999633 2678888873
No 138
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.06 E-value=2.9 Score=32.94 Aligned_cols=43 Identities=12% Similarity=0.284 Sum_probs=32.4
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC----CCEEEEEEcC
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS----EVSLSLTLDP 442 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS----e~sIsi~V~~ 442 (456)
+|++.|. +.||+++++.+.|+++|+||.-++++ .....+.++-
T Consensus 1 ~vtv~G~---DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~ 47 (75)
T cd04870 1 LITVTGP---DRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI 47 (75)
T ss_pred CEEEEcC---CCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc
Confidence 3677774 58999999999999999999887532 3455555543
No 139
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=85.17 E-value=2.4 Score=29.06 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=30.0
Q ss_pred CchhHHHHHHHHHHhCCCcEEEEEeC------CCEEEEEEcCCC
Q 012808 407 GQYGFLAKVFSTFEDLGISVDVVATS------EVSLSLTLDPSK 444 (456)
Q Consensus 407 ~~~g~~akif~~L~~~gI~V~~IstS------e~sIsi~V~~~d 444 (456)
+.+|.++++++.|+++++++..+..+ ...+.+.++..+
T Consensus 7 ~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 50 (60)
T cd02116 7 DRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG 50 (60)
T ss_pred CCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH
Confidence 47899999999999999999998643 245667776654
No 140
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=84.93 E-value=3 Score=33.61 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=31.5
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEeCC------CEEEEEEc
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLD 441 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~IstSe------~sIsi~V~ 441 (456)
..+.||+++++...|+..|.||+-++-.+ ..+++++.
T Consensus 10 v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~ 52 (76)
T PRK11152 10 ARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA 52 (76)
T ss_pred EECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC
Confidence 45799999999999999999999997332 57888885
No 141
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=83.78 E-value=2 Score=33.11 Aligned_cols=47 Identities=15% Similarity=0.327 Sum_probs=34.4
Q ss_pred CchhHHHHHHHHHHhCCCcEEEEEeC------CCEEEEEEcCCCcCcHHHHhh
Q 012808 407 GQYGFLAKVFSTFEDLGISVDVVATS------EVSLSLTLDPSKLWSRELIQQ 453 (456)
Q Consensus 407 ~~~g~~akif~~L~~~gI~V~~IstS------e~sIsi~V~~~d~~~~~l~~~ 453 (456)
+.||++.++...|...|+||+-++.+ -..++++++.++-.-..|.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Q 53 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQ 53 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHH
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHH
Confidence 47999999999999999999998633 277888888755444445444
No 142
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=82.89 E-value=2.7 Score=38.63 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=30.8
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEeC--C----CEEEEEEcCC
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVATS--E----VSLSLTLDPS 443 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~IstS--e----~sIsi~V~~~ 443 (456)
..+.||.++++...|+++|+||+-++.+ + ..+++.++.+
T Consensus 8 ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d 52 (157)
T TIGR00119 8 VENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD 52 (157)
T ss_pred EcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC
Confidence 4579999999999999999999987522 2 3477777763
No 143
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=82.69 E-value=22 Score=33.91 Aligned_cols=46 Identities=20% Similarity=0.363 Sum_probs=31.6
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCcCcHHHHh
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQ 452 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~~~~~l~~ 452 (456)
.+.||+++++-+.|.+++|||-.+.-+ ...+ .++.-++-...++++
T Consensus 156 ~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai-~vl~vD~~v~~~vl~ 206 (208)
T TIGR00719 156 NDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIAL-LTIEIDKNIDDHIKD 206 (208)
T ss_pred CCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEE-EEEEeCCCCCHHHHh
Confidence 468999999999999999999877522 2333 334444444555544
No 144
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.25 E-value=2.6 Score=31.45 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
+.+.||.++++++.|+++|+||..+.
T Consensus 6 ~~d~pG~L~~i~~~l~~~~~nI~~i~ 31 (65)
T cd04882 6 VPDKPGGLHEILQILSEEGINIEYMY 31 (65)
T ss_pred eCCCCcHHHHHHHHHHHCCCChhheE
Confidence 56789999999999999999997664
No 145
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=82.15 E-value=3 Score=38.51 Aligned_cols=40 Identities=15% Similarity=0.338 Sum_probs=31.4
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEeC--C----CEEEEEEcCCC
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVATS--E----VSLSLTLDPSK 444 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~IstS--e----~sIsi~V~~~d 444 (456)
..+.||.++++...|+++|+||+-++.+ + ..+++.++.++
T Consensus 9 veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~ 54 (161)
T PRK11895 9 VENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE 54 (161)
T ss_pred EcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH
Confidence 4579999999999999999999887532 2 34778887543
No 146
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.67 E-value=11 Score=41.17 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=61.4
Q ss_pred HHHHHHHHhCCCCEEEecCC-CCCCCceEEee-ccCCccceeeEEEEecC-eEEEEEEeCC-------------CCCchh
Q 012808 347 PQSMRPAREGDIPVRVKNSY-NPNAPGTLIRR-SRDMSKAVLTSIVLKRN-VTMLDIVSTR-------------MLGQYG 410 (456)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n~~-~p~~~GT~I~~-~~~~~~~~i~~I~~~~n-valIsv~g~~-------------m~~~~g 410 (456)
+.|...|++.||.+...... .+.+|.|.-.. ..+.....+.+.++-.+ +-++.|.|.. ..+.||
T Consensus 385 ~nA~~iA~e~GI~~~~~~~~~~~~hpNtv~i~l~~~~~~~~v~G~s~ggg~~~I~~ing~~v~~~~~~~~li~~~~D~pG 464 (526)
T PRK13581 385 VNAPLLAKERGIEVEESKSEESPDYSNLITVTVTTDDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRDRPG 464 (526)
T ss_pred cCHHHHHHHcCCEEEEEEecCCCCCCCEEEEEEEeCCeEEEEEEEEecCCceEEEEECCEEEEeeCCceEEEEEeCCcCC
Confidence 45888999999998765443 33456653221 11111222444433222 2222233211 146899
Q ss_pred HHHHHHHHHHhCCCcEEEEEeC----CCEEEEEEcCCCcCcHHHHhh
Q 012808 411 FLAKVFSTFEDLGISVDVVATS----EVSLSLTLDPSKLWSRELIQQ 453 (456)
Q Consensus 411 ~~akif~~L~~~gI~V~~IstS----e~sIsi~V~~~d~~~~~l~~~ 453 (456)
+++++-+.|++++|||..+..+ ...-.++++-++..+.+++++
T Consensus 465 ~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~ 511 (526)
T PRK13581 465 VIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEE 511 (526)
T ss_pred hhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHH
Confidence 9999999999999999887643 133334455565555666553
No 147
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=80.07 E-value=5.8 Score=31.38 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=31.6
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe----CCCEEEEEEcCC
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT----SEVSLSLTLDPS 443 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist----Se~sIsi~V~~~ 443 (456)
.+|++.|. +.||+++.+++.|+++|+||.-+.. ...+..+.|+-.
T Consensus 3 ~vItv~G~---DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~ 51 (76)
T PF13740_consen 3 LVITVVGP---DRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP 51 (76)
T ss_dssp EEEEEEEE-----TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEec---CCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC
Confidence 57899985 5899999999999999999887752 244555555433
No 148
>PRK00194 hypothetical protein; Validated
Probab=78.09 E-value=3.3 Score=33.63 Aligned_cols=32 Identities=13% Similarity=0.422 Sum_probs=28.2
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
.++++.|. +.||+++++.+.|+++|+||.-++
T Consensus 4 ~~ltv~g~---DrpGiva~vt~~la~~g~nI~~~~ 35 (90)
T PRK00194 4 AIITVIGK---DKVGIIAGVSTVLAELNVNILDIS 35 (90)
T ss_pred EEEEEEcC---CCCCHHHHHHHHHHHcCCCEEehh
Confidence 46788875 589999999999999999999886
No 149
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=78.04 E-value=3.4 Score=30.30 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.4
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
+.+.||.++++.+.|.++|+||..+.
T Consensus 5 ~~d~~G~l~~i~~~l~~~~inI~~~~ 30 (56)
T cd04889 5 VENKPGRLAEVTEILAEAGINIKAIS 30 (56)
T ss_pred eCCCCChHHHHHHHHHHcCCCEeeEE
Confidence 56789999999999999999997774
No 150
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.00 E-value=8.4 Score=29.99 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=27.2
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist 431 (456)
+|++.|. +.||+++++.+.|+++|+||.-+.+
T Consensus 1 ii~v~g~---D~~Giv~~it~~l~~~g~nI~~~~~ 32 (74)
T cd04875 1 ILTLSCP---DRPGIVAAVSGFLAEHGGNIVESDQ 32 (74)
T ss_pred CEEEEcC---CCCCHHHHHHHHHHHcCCCEEeeee
Confidence 3677764 5899999999999999999988863
No 151
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.24 E-value=9.9 Score=29.00 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=29.6
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEeC------CCEEEEEEcCCC
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVATS------EVSLSLTLDPSK 444 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~IstS------e~sIsi~V~~~d 444 (456)
+.+.||.++++.+.|+++|+||.-+... ...+.|.++..+
T Consensus 8 ~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~ 53 (72)
T cd04883 8 VPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN 53 (72)
T ss_pred ECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC
Confidence 6688999999999999999999877421 223555665444
No 152
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=77.06 E-value=12 Score=40.96 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=59.5
Q ss_pred HHHHHHHHhCCCCEEEecCC-CCCCCceE-EeeccCCccceeeEEEEec-CeEEEEEEeCCC-------------CCchh
Q 012808 347 PQSMRPAREGDIPVRVKNSY-NPNAPGTL-IRRSRDMSKAVLTSIVLKR-NVTMLDIVSTRM-------------LGQYG 410 (456)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n~~-~p~~~GT~-I~~~~~~~~~~i~~I~~~~-nvalIsv~g~~m-------------~~~~g 410 (456)
+.|...|++.||.+...... .+.+|.|. |.-..+.....+.+.++-. .+-++.|.|..+ .+.||
T Consensus 384 ~nA~~iA~e~GI~v~~~~~~~~~~hpNtv~i~l~~~~~~~~v~G~s~gGg~~~I~~ing~~v~~~~~~~~li~~~~D~pG 463 (525)
T TIGR01327 384 VNAPAVAKERGITVEESKSESSPDYKNYLSVTVTGDSGTVSVAGTVFGGFSPRIVEIDGFHVDLEPEGIMLIILHLDKPG 463 (525)
T ss_pred cCHHHHHHHcCCEEEEEEccCCCCCCCEEEEEEEeCCcEEEEEEEEecCCcEEEEEECCEEEEEecCccEEEEEecCcCC
Confidence 45888999999998665443 33466663 2222211222344444322 222222332211 36899
Q ss_pred HHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCcCcHHHHh
Q 012808 411 FLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQ 452 (456)
Q Consensus 411 ~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~~~~~l~~ 452 (456)
+++++-+.|++++|||-.+..+ ...+ +++.-++-.+.++++
T Consensus 464 ~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al-~~i~~D~~v~~~~l~ 509 (525)
T TIGR01327 464 VIGKVGTLLGTAGINIASMQLGRKEKGGEAL-MLLSLDQPVPDEVLE 509 (525)
T ss_pred cchHHHhHHhhcCCChHHcEeecCCCCCeEE-EEEEcCCCCCHHHHH
Confidence 9999999999999999776532 2333 344445444555544
No 153
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.11 E-value=12 Score=30.20 Aligned_cols=32 Identities=16% Similarity=0.406 Sum_probs=27.8
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
.+|++.|. +.||+++++.+.|+++|+||.-++
T Consensus 2 ~vl~i~g~---D~pGiva~vt~~la~~g~nI~~~~ 33 (88)
T cd04872 2 AVITVVGK---DRVGIVAGVSTKLAELNVNILDIS 33 (88)
T ss_pred EEEEEEcC---CCCCHHHHHHHHHHHcCCCEEech
Confidence 35777875 589999999999999999999886
No 154
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=76.05 E-value=13 Score=32.56 Aligned_cols=96 Identities=15% Similarity=0.207 Sum_probs=54.7
Q ss_pred HHHHHHHhCCCCEEEecCCCCCCCce--EEeeccCCccc--eeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCC
Q 012808 348 QSMRPAREGDIPVRVKNSYNPNAPGT--LIRRSRDMSKA--VLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLG 423 (456)
Q Consensus 348 ~a~~~a~~~~Ipv~I~n~~~p~~~GT--~I~~~~~~~~~--~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~g 423 (456)
.++..++++||.++-.+--+...-|- .|...++.... .=.+.+++.+ ++.+-.|.+.||-+.+|.++|.+++
T Consensus 19 ~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A~~~Lee~gF~Vr~~----dVlaVEmeD~PG~l~~I~~vl~d~d 94 (142)
T COG4747 19 SVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEAHSVLEEAGFTVRET----DVLAVEMEDVPGGLSRIAEVLGDAD 94 (142)
T ss_pred HHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHHHHHHHHCCcEEEee----eEEEEEecCCCCcHHHHHHHHhhcC
Confidence 45667789999988665444333342 23333322111 0112222211 2333347789999999999999999
Q ss_pred CcEEEEE--eCCCE-EEEEEcCCCcCc
Q 012808 424 ISVDVVA--TSEVS-LSLTLDPSKLWS 447 (456)
Q Consensus 424 I~V~~Is--tSe~s-Isi~V~~~d~~~ 447 (456)
||++.+- .++.. --++++.+|+..
T Consensus 95 iNldYiYAFv~ek~KAlli~r~ed~d~ 121 (142)
T COG4747 95 INLDYIYAFVTEKQKALLIVRVEDIDR 121 (142)
T ss_pred cCceeeeeeeecCceEEEEEEhhHHHH
Confidence 9999873 44433 334445555543
No 155
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=75.83 E-value=7 Score=36.54 Aligned_cols=43 Identities=14% Similarity=0.350 Sum_probs=34.9
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC------CCEEEEEEcCC
Q 012808 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS------EVSLSLTLDPS 443 (456)
Q Consensus 398 Isv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS------e~sIsi~V~~~ 443 (456)
+++.+ .+.||+++++...|+++|+||+-++++ ...++++++.+
T Consensus 5 isvlv---~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~ 53 (174)
T CHL00100 5 LSVLV---EDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGD 53 (174)
T ss_pred EEEEE---eCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECC
Confidence 45553 469999999999999999999999743 36788888765
No 156
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=75.76 E-value=11 Score=29.80 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=27.7
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
.+|++.|. +.||+++++.+.|+++|.||.-++
T Consensus 2 ~iltv~g~---Dr~GiVa~vs~~la~~g~nI~d~~ 33 (77)
T cd04893 2 LVISALGT---DRPGILNELTRAVSESGCNILDSR 33 (77)
T ss_pred EEEEEEeC---CCChHHHHHHHHHHHcCCCEEEce
Confidence 35788875 589999999999999999998875
No 157
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=75.52 E-value=11 Score=33.12 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=35.9
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE---eCCCEE-EEEEcCCCcCc
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA---TSEVSL-SLTLDPSKLWS 447 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is---tSe~sI-si~V~~~d~~~ 447 (456)
.|++. .-+.||=++.+...|.++|||+...+ +|+.-| .++|++.|...
T Consensus 5 QISvF---lENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A~ 56 (142)
T COG4747 5 QISVF---LENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEAH 56 (142)
T ss_pred EEEEE---ecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHHH
Confidence 46666 45789999999999999999999886 666554 45555555433
No 158
>PRK08577 hypothetical protein; Provisional
Probab=74.53 E-value=9 Score=33.93 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=29.2
Q ss_pred cCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 393 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 393 ~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
++.+.|++.. .+.+|.++++.+.|+++++++.-+.
T Consensus 54 k~~~~I~V~~---~Dr~GvLa~I~~~l~~~~inI~~i~ 88 (136)
T PRK08577 54 KKLVEIELVV---EDRPGVLAKITGLLAEHGVDILATE 88 (136)
T ss_pred ccEEEEEEEE---cCCCCHHHHHHHHHHHCCCCEEEEE
Confidence 3467788884 5689999999999999999998664
No 159
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=74.30 E-value=7.3 Score=30.38 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.4
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEEe
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVAT 431 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~Ist 431 (456)
.+.||.++++++.|+++|+|+..|.+
T Consensus 7 ~d~pG~L~~vL~~f~~~~vni~~I~S 32 (75)
T cd04880 7 KNKPGALAKALKVFAERGINLTKIES 32 (75)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEEEe
Confidence 46899999999999999999999953
No 160
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=71.51 E-value=21 Score=27.88 Aligned_cols=30 Identities=13% Similarity=0.348 Sum_probs=25.8
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 398 Isv~g~~m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
|++.|. +.||.++++.+.|+++|+||.-+.
T Consensus 2 l~v~g~---D~~Giv~~it~~l~~~~~nI~~~~ 31 (81)
T cd04869 2 VEVVGN---DRPGIVHEVTQFLAQRNINIEDLS 31 (81)
T ss_pred EEEEeC---CCCCHHHHHHHHHHHcCCCeEEeE
Confidence 566664 489999999999999999998885
No 161
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=70.83 E-value=11 Score=29.82 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=33.5
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCC------CEEEEEEcCCCcCc
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWS 447 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe------~sIsi~V~~~d~~~ 447 (456)
+.|.|.+ .+.+|.+++|.+++++.|+||..+.... ..+.|.|.-.+..+
T Consensus 7 ~~l~i~~---~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~ 61 (80)
T PF13291_consen 7 VRLRIEA---EDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEH 61 (80)
T ss_dssp EEEEEEE---E--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHH
T ss_pred EEEEEEE---EcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHH
Confidence 3455553 4689999999999999999999986221 35666665555544
No 162
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=67.39 E-value=18 Score=31.66 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=52.4
Q ss_pred eeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc-HHHHh
Q 012808 385 VLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS-RELIQ 452 (456)
Q Consensus 385 ~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~-~~l~~ 452 (456)
....|.+..+-..+++.|.=--+.+|+++.|.+.|+++||.|-.+||-..+- +.|..+|+.. .+.+.
T Consensus 53 vp~~V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStydtDh-iLVr~~dLekAv~~L~ 120 (128)
T COG3603 53 VPDVVQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYDTDH-ILVREEDLEKAVKALE 120 (128)
T ss_pred CCcceEecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEeccCce-EEEehhhHHHHHHHHH
Confidence 3457788899999999998667899999999999999999999998654432 4667777644 44443
No 163
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.27 E-value=9.7 Score=29.43 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.5
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
+.+.||.++++.+.|+++|+||.-+.
T Consensus 6 ~~d~pG~L~~l~~~i~~~g~nI~~i~ 31 (72)
T cd04884 6 LEDKPGTLKPVVDTLREFNARIISIL 31 (72)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEEE
Confidence 66899999999999999999998664
No 164
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=67.18 E-value=24 Score=26.11 Aligned_cols=38 Identities=11% Similarity=0.345 Sum_probs=28.9
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEeCC------CEEEEEEcC
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDP 442 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~IstSe------~sIsi~V~~ 442 (456)
+.+.+|.++++...|+++|+++..+.... ..+.+.++.
T Consensus 7 ~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 7 VENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 34689999999999999999999885332 235666654
No 165
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.67 E-value=20 Score=26.51 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.4
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
.+.||.++++...|+++|+++..+.
T Consensus 7 ~d~~g~l~~i~~~l~~~~~~I~~~~ 31 (71)
T cd04903 7 KDKPGAIAKVTSVLADHEINIAFMR 31 (71)
T ss_pred CCCCChHHHHHHHHHHcCcCeeeeE
Confidence 4689999999999999999998774
No 166
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=66.42 E-value=18 Score=26.71 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=23.0
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
+.+.+|.++++.+.|+++|++|.-+.
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~nI~~~~ 31 (71)
T cd04879 6 HKDVPGVIGKVGTILGEHGINIAAMQ 31 (71)
T ss_pred ecCCCCHHHHHHHHHHhcCCCeeeEE
Confidence 45689999999999999999998774
No 167
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=66.39 E-value=14 Score=28.00 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.5
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
+.+.||.++++.+.|+++|+||..+.
T Consensus 6 ~~d~~G~l~~i~~~l~~~~inI~~~~ 31 (73)
T cd04902 6 NTDRPGVIGKVGTILGEAGINIAGMQ 31 (73)
T ss_pred eCCCCCHHHHHHHHHHHcCcChhheE
Confidence 45789999999999999999997653
No 168
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.00 E-value=18 Score=27.67 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCcCc
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWS 447 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~~~ 447 (456)
+.+.||.++++.+++++.|+||.-+... ...+.|.+.-.+..+
T Consensus 6 ~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~ 53 (74)
T cd04887 6 LPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEH 53 (74)
T ss_pred eCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHH
Confidence 4578999999999999999999876522 233566666555444
No 169
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=65.88 E-value=14 Score=29.29 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=29.3
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEe-----CCCEEEEEEcCC
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVAT-----SEVSLSLTLDPS 443 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Ist-----Se~sIsi~V~~~ 443 (456)
+.+.||.++++++.|+++|||+..+.+ ....+.|.|+-+
T Consensus 8 ~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~ 51 (80)
T cd04905 8 LPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE 51 (80)
T ss_pred ECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence 346899999999999999999987742 234466666544
No 170
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.88 E-value=25 Score=26.54 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=29.3
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEeC------CCEEEEEEcCCC
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVATS------EVSLSLTLDPSK 444 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~IstS------e~sIsi~V~~~d 444 (456)
+.+.+|.++++...|+++|+++.-+.+. ...+.+.+...+
T Consensus 7 ~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~ 52 (79)
T cd04881 7 VKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETS 52 (79)
T ss_pred eCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCC
Confidence 3568999999999999999999887522 133555555443
No 171
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.28 E-value=13 Score=28.28 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=28.1
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE--e---C-CCEEEEEEc
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA--T---S-EVSLSLTLD 441 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is--t---S-e~sIsi~V~ 441 (456)
+.+.||.++++.+.|+++|+++.-+. . . ...+.+.++
T Consensus 8 ~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 8 VPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred cCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 56899999999999999999997663 1 1 334556665
No 172
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.22 E-value=16 Score=27.15 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.9
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
+.+.||.++++++.|+++|++|.-+.
T Consensus 5 ~~d~~G~L~~i~~~i~~~~~nI~~i~ 30 (73)
T cd04886 5 LPDRPGQLAKLLAVIAEAGANIIEVS 30 (73)
T ss_pred eCCCCChHHHHHHHHHHcCCCEEEEE
Confidence 45789999999999999999998664
No 173
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=58.87 E-value=32 Score=25.65 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=24.8
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 398 Isv~g~~m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
|.|. +.+.+|.++++...|+++|++|..+.
T Consensus 3 l~i~---~~d~~g~l~~i~~~l~~~~~~I~~~~ 32 (70)
T cd04873 3 VEVY---APDRPGLLADITRVLADLGLNIHDAR 32 (70)
T ss_pred EEEE---eCCCCCHHHHHHHHHHHCCCeEEEEE
Confidence 4555 35689999999999999999997763
No 174
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=58.00 E-value=9.2 Score=31.08 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=26.8
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
+|++.|..+ ..|.++++-+.|+++|+||+-|.
T Consensus 1 ivtvlg~~~--~a~~ia~Vs~~lA~~~~NI~~I~ 32 (84)
T cd04871 1 IVTLLGRPL--TAEQLAAVTRVVADQGLNIDRIR 32 (84)
T ss_pred CEEEEcCcC--CHHHHHHHHHHHHHcCCCHHHHH
Confidence 367777543 68999999999999999999886
No 175
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.75 E-value=45 Score=24.71 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=22.8
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
+.+.+|.++++.+.|+++++++.-+.
T Consensus 7 ~~d~~g~l~~i~~~l~~~~~~i~~~~ 32 (72)
T cd04874 7 AEDKPGVLRDLTGVIAEHGGNITYTQ 32 (72)
T ss_pred eCCCCChHHHHHHHHHhCCCCEEEEE
Confidence 45789999999999999999998664
No 176
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.61 E-value=19 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=26.6
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV 429 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~I 429 (456)
++|.|.. .+.||.+.++.++|.++|++|...
T Consensus 2 Tviev~a---~DRpGLL~~i~~~l~~~gl~I~~A 32 (72)
T cd04895 2 TLVKVDS---ARKPGILLEAVQVLTDLDLCITKA 32 (72)
T ss_pred EEEEEEE---CCcCCHHHHHHHHHHHCCcEEEEE
Confidence 4667774 569999999999999999999985
No 177
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.17 E-value=18 Score=27.33 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=25.6
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
+|.|.+ .+.+|+++++..+|+++|++|.-+.
T Consensus 2 ~l~v~~---~d~~gll~~i~~~l~~~~~~I~~~~ 32 (70)
T cd04899 2 VLELTA---LDRPGLLADVTRVLAELGLNIHSAK 32 (70)
T ss_pred EEEEEE---cCCccHHHHHHHHHHHCCCeEEEEE
Confidence 456664 4689999999999999999997663
No 178
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.71 E-value=21 Score=27.76 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEE--EeC-C-CEEEEEEcC
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVV--ATS-E-VSLSLTLDP 442 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~I--stS-e-~sIsi~V~~ 442 (456)
+.+.||.++++..+|+++|+||... .+. + .-..|.|.+
T Consensus 8 ~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~ 49 (72)
T cd04926 8 TEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD 49 (72)
T ss_pred ECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC
Confidence 4579999999999999999999654 233 2 235555543
No 179
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=56.39 E-value=17 Score=33.63 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=37.6
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEE------eCCCEEEEEEcCCCcCcHHHHhh
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVA------TSEVSLSLTLDPSKLWSRELIQQ 453 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~Is------tSe~sIsi~V~~~d~~~~~l~~~ 453 (456)
.+.||.+.++...|+..|.|++.++ .....+++++..++-.-.++.+|
T Consensus 12 ~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQ 65 (163)
T COG0440 12 ENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQ 65 (163)
T ss_pred ECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHH
Confidence 4789999999999999999999986 23578899998843444555554
No 180
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=55.69 E-value=2.4e+02 Score=28.77 Aligned_cols=123 Identities=19% Similarity=0.227 Sum_probs=66.0
Q ss_pred CCCChhHHHHHHHHcCCceE-EEeecCCccccCCCCCCCCCccccccCHHHHHHHH-HcCCCcchHHH---HHHHHhCCC
Q 012808 284 RGGSDLTATTIGKALGLQEI-QVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELA-YFGAQVLHPQS---MRPAREGDI 358 (456)
Q Consensus 284 RGGSD~tAa~lA~~L~A~~l-~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa-~~Ga~vlhp~a---~~~a~~~~I 358 (456)
.||++..|-.||..|||.-+ +=-||+.|.+.-| .++ .+|..+-.++. +.-+.-.|=
T Consensus 99 ~GGAN~LA~~iA~~lga~pVITTAtd~~g~~avD-------------------~la~~~g~~i~~~~~~k~i~a~ll~g~ 159 (315)
T PRK05788 99 HGGANELARDLAKILGAVPVITTATDVNGKAAVD-------------------TIAKQLNAKIVNRESTKKVNAALVNGE 159 (315)
T ss_pred cccHHHHHHHHHHHhCCEEEEeCCccccCCccHH-------------------HHHHhcCCEecCHHHHHHHHHHHHCCC
Confidence 58899999999999999765 4567888877533 222 24655555443 333444455
Q ss_pred CEEEecCCCCCCCceEEeeccC-CccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEE
Q 012808 359 PVRVKNSYNPNAPGTLIRRSRD-MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV 428 (456)
Q Consensus 359 pv~I~n~~~p~~~GT~I~~~~~-~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~ 428 (456)
||.+..-. ..+..+..... .....-..+.+......+-|=-..-.....+...+.+.|+++|++.+-
T Consensus 160 ~v~~~~~~---~~~~i~i~~~~~~~~~~~~~l~l~P~~l~vGIGcrrg~~~e~i~~ai~~~L~~~~i~~~~ 227 (315)
T PRK05788 160 KVGLWGDE---LDPVIRVSLRNDVPELPKVTVKLRPKNVVLGIGCRKGVSAEEIAEAVERALEALNIDPRA 227 (315)
T ss_pred ceEEEccC---CCceEEEeccccccCCCCceEEEecCeEEEeeccCCCCCHHHHHHHHHHHHHHcCCCHHH
Confidence 55554321 12233322211 000111233334443333332222223455788899999999986443
No 181
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=55.54 E-value=42 Score=33.79 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=29.6
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS 432 (456)
..|++.|. +.||+++++.+.|+++|+||.-+++.
T Consensus 8 ~vitv~G~---DrpGIVa~VT~~La~~~vNI~dls~~ 41 (286)
T PRK13011 8 FVLTLSCP---SAAGIVAAVTGFLAEHGCYITELHSF 41 (286)
T ss_pred EEEEEEeC---CCCCHHHHHHHHHHhCCCCEEEeeee
Confidence 56788875 58999999999999999999988753
No 182
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.60 E-value=19 Score=28.20 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=31.4
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEE--Ee-C-CCEEEEEEcC
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--AT-S-EVSLSLTLDP 442 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~I--st-S-e~sIsi~V~~ 442 (456)
+|++.+. +.||+++++..+|+++|+||... .+ . ..--.|.|.+
T Consensus 2 ~~~v~~~---Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d 48 (74)
T cd04925 2 AIELTGT---DRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD 48 (74)
T ss_pred EEEEEEC---CCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc
Confidence 5777765 69999999999999999999874 22 2 2334555543
No 183
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=54.40 E-value=43 Score=26.00 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=30.5
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEEeCC-CEEEEEEcCCCcCc
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVATSE-VSLSLTLDPSKLWS 447 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~IstSe-~sIsi~V~~~d~~~ 447 (456)
.+.+|+++.+...+++.|+|+..+.... ..+.+.+.-.+..+
T Consensus 8 ~dr~Gll~dI~~~i~~~~~nI~~~~~~~~~~i~l~i~v~~~~~ 50 (74)
T cd04877 8 EDRLGITQEVLDLLVEHNIDLRGIEIDPKGRIYLNFPTIEFEK 50 (74)
T ss_pred EccchHHHHHHHHHHHCCCceEEEEEecCCeEEEEeEecCHHH
Confidence 3689999999999999999999886433 22555555444433
No 184
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=54.11 E-value=61 Score=32.18 Aligned_cols=68 Identities=29% Similarity=0.390 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccC
Q 012808 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (456)
Q Consensus 205 sa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgR 284 (456)
|+.-|+..|.++|++..... +-.| +...+.+.+... .+...+.|++|-+|-+.
T Consensus 22 Na~~la~~L~~~G~~v~~~~-------~VgD---------~~~~I~~~l~~a-~~r~D~vI~tGGLGPT~---------- 74 (255)
T COG1058 22 NAAFLADELTELGVDLARIT-------TVGD---------NPDRIVEALREA-SERADVVITTGGLGPTH---------- 74 (255)
T ss_pred hHHHHHHHHHhcCceEEEEE-------ecCC---------CHHHHHHHHHHH-HhCCCEEEECCCcCCCc----------
Confidence 56678999999999876532 1111 223344444432 34567899999888653
Q ss_pred CCChhHHHHHHHHcCCc
Q 012808 285 GGSDLTATTIGKALGLQ 301 (456)
Q Consensus 285 GGSD~tAa~lA~~L~A~ 301 (456)
-|.|+=.+|.+||-+
T Consensus 75 --DDiT~e~vAka~g~~ 89 (255)
T COG1058 75 --DDLTAEAVAKALGRP 89 (255)
T ss_pred --cHhHHHHHHHHhCCC
Confidence 488899999999954
No 185
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=52.67 E-value=34 Score=32.33 Aligned_cols=48 Identities=10% Similarity=0.229 Sum_probs=38.1
Q ss_pred cCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe----CCCEEEEEEcCC
Q 012808 393 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT----SEVSLSLTLDPS 443 (456)
Q Consensus 393 ~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist----Se~sIsi~V~~~ 443 (456)
.+..+|++.|. +.||+++++.+.|+++|+||.=.+. .+....+.|...
T Consensus 6 ~~~lviTviG~---DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~ 57 (190)
T PRK11589 6 QHYLVITALGA---DRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS 57 (190)
T ss_pred ccEEEEEEEcC---CCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC
Confidence 35678899985 5899999999999999999987763 366777777443
No 186
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.76 E-value=30 Score=26.87 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=25.3
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV 429 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~I 429 (456)
.|.|.. .+.||.++++..+|+.+|+||...
T Consensus 3 ~i~v~~---~Dr~gLl~~i~~~l~~~~l~I~~A 32 (73)
T cd04900 3 EVFIYT---PDRPGLFARIAGALDQLGLNILDA 32 (73)
T ss_pred EEEEEe---cCCCCHHHHHHHHHHHCCCCeEEe
Confidence 455663 479999999999999999999884
No 187
>PRK03670 competence damage-inducible protein A; Provisional
Probab=48.99 E-value=83 Score=31.08 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeecc
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlg 283 (456)
-|+..++..|.+.|++.... .++. | +...+.+.+...+.....+.|++|-+|.+.
T Consensus 20 tN~~~la~~L~~~G~~v~~~-----~iV~-D----------d~~~I~~~l~~a~~~~~DlVIttGGlGpt~--------- 74 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRI-----TTVG-D----------DVEEIKSVVLEILSRKPEVLVISGGLGPTH--------- 74 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEE-----EEcC-C----------CHHHHHHHHHHHhhCCCCEEEECCCccCCC---------
Confidence 46677888899999986432 1222 2 233455554432222347888888676552
Q ss_pred CCCChhHHHHHHHHcCCc
Q 012808 284 RGGSDLTATTIGKALGLQ 301 (456)
Q Consensus 284 RGGSD~tAa~lA~~L~A~ 301 (456)
-|.|.-.+|.+++-+
T Consensus 75 ---dD~T~eava~a~g~~ 89 (252)
T PRK03670 75 ---DDVTMLAVAEALGRE 89 (252)
T ss_pred ---CCchHHHHHHHhCCC
Confidence 588899999999853
No 188
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=46.40 E-value=25 Score=35.50 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=29.3
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist 431 (456)
.+|++.|. +.||++++|.+.|+++|+||.-+++
T Consensus 10 ~iitv~G~---Dr~GIVA~Vs~~Lae~g~NI~disq 42 (289)
T PRK13010 10 YVLTLACP---SAPGIVAAVSGFLAEKGCYIVELTQ 42 (289)
T ss_pred EEEEEECC---CCCCcHHHHHHHHHHCCCCEEeccc
Confidence 46889985 5899999999999999999988876
No 189
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=43.57 E-value=1.7e+02 Score=25.32 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=37.6
Q ss_pred CCceeeccCCCC--h-hHHHHHHHHcCCceEEEeecCCccccCCCCC---CCCCcccc--ccCHHHHHHHH
Q 012808 276 TCAITTLGRGGS--D-LTATTIGKALGLQEIQVWKDVDGVLTCDPNI---HPHAKPVP--YLTFDEAAELA 338 (456)
Q Consensus 276 ~G~vttlgRGGS--D-~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~---v~~Ak~i~--~ls~~Ea~eLa 338 (456)
.|.+..+.||+. + .--...|...||.-++++.+.+|.+..-|.. ......|| .|+.+++.+|.
T Consensus 44 ~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~ 114 (127)
T cd04819 44 EGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLA 114 (127)
T ss_pred CCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHH
Confidence 456665566554 2 2357789999999999999999865321110 01112233 45667766664
No 190
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.47 E-value=32 Score=27.21 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=25.2
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV 429 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~I 429 (456)
++.|.. .+.||+++++..+|+++|++|...
T Consensus 2 ~~ei~~---~Dr~gLfa~i~~~l~~~~l~I~~A 31 (76)
T cd04927 2 LLKLFC---SDRKGLLHDVTEVLYELELTIERV 31 (76)
T ss_pred EEEEEE---CCCCCHHHHHHHHHHHCCCeEEEE
Confidence 456664 469999999999999999999874
No 191
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=42.94 E-value=33 Score=26.92 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=27.5
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEEe-----CCCEEEEEEc
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVAT-----SEVSLSLTLD 441 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~Ist-----Se~sIsi~V~ 441 (456)
.+.||-+.++++.|+++|||+-.|-+ ..-...|.|+
T Consensus 8 ~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd 48 (74)
T cd04904 8 KEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVD 48 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEE
Confidence 35799999999999999999999852 2234555554
No 192
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=42.65 E-value=1.6e+02 Score=27.09 Aligned_cols=69 Identities=25% Similarity=0.335 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeecc
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlg 283 (456)
-|+..++..|.+.|++.... .++. | +...+.+.+.. +++...+.|++|-.|.+
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~-----~~v~-D----------d~~~I~~~l~~-~~~~~dlVIttGG~G~t---------- 71 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRV-----TVVG-D----------DEDRIAEALRR-ASERADLVITTGGLGPT---------- 71 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEE-----EEeC-C----------CHHHHHHHHHH-HHhCCCEEEECCCCCCC----------
Confidence 46677888999999976432 1222 2 23345555543 23455788888855544
Q ss_pred CCCChhHHHHHHHHcCCc
Q 012808 284 RGGSDLTATTIGKALGLQ 301 (456)
Q Consensus 284 RGGSD~tAa~lA~~L~A~ 301 (456)
.-|.+--.++.+++-+
T Consensus 72 --~~D~t~ea~~~~~~~~ 87 (170)
T cd00885 72 --HDDLTREAVAKAFGRP 87 (170)
T ss_pred --CCChHHHHHHHHhCCC
Confidence 2699999999999853
No 193
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=42.57 E-value=1.1e+02 Score=26.91 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeec
Q 012808 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (456)
Q Consensus 203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttl 282 (456)
.-|+..++..|++.|+...... ++-+ +...+.+.+.. ++++..+.|++|-.|.+.
T Consensus 16 d~n~~~l~~~l~~~G~~v~~~~-----~v~D-----------d~~~i~~~l~~-~~~~~D~VittGG~g~~~-------- 70 (144)
T PF00994_consen 16 DSNGPFLAALLEELGIEVIRYG-----IVPD-----------DPDAIKEALRR-ALDRADLVITTGGTGPGP-------- 70 (144)
T ss_dssp BHHHHHHHHHHHHTTEEEEEEE-----EEES-----------SHHHHHHHHHH-HHHTTSEEEEESSSSSST--------
T ss_pred EhHHHHHHHHHHHcCCeeeEEE-----EECC-----------CHHHHHHHHHh-hhccCCEEEEcCCcCccc--------
Confidence 4577888999999999765421 2222 34556666643 345668888888555442
Q ss_pred cCCCChhHHHHHHHHcCC
Q 012808 283 GRGGSDLTATTIGKALGL 300 (456)
Q Consensus 283 gRGGSD~tAa~lA~~L~A 300 (456)
.|++.-.++.+.+-
T Consensus 71 ----~D~t~~a~~~~~~~ 84 (144)
T PF00994_consen 71 ----DDVTPEALAEAGGR 84 (144)
T ss_dssp ----TCHHHHHHHHHSSE
T ss_pred ----CCcccHHHHHhcCc
Confidence 68999999888763
No 194
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=42.15 E-value=53 Score=30.31 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
...||+++.++..++++||+|..+-
T Consensus 103 ~~~pgi~A~V~~~iak~gi~Irqi~ 127 (167)
T COG2150 103 ARYPGILAGVASLIAKRGISIRQII 127 (167)
T ss_pred CCCccHHHHHHHHHHHcCceEEEEe
Confidence 3579999999999999999999984
No 195
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.93 E-value=38 Score=27.12 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=25.3
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV 429 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~I 429 (456)
+|.|.. .+.||.++++..+|.++|++|...
T Consensus 2 vlev~a---~DRpGLL~~i~~~l~~~~l~i~~A 31 (75)
T cd04896 2 LLQIRC---VDQKGLLYDILRTSKDCNIQISYG 31 (75)
T ss_pred EEEEEe---CCcccHHHHHHHHHHHCCeEEEEE
Confidence 455664 569999999999999999999884
No 196
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=40.87 E-value=2.2e+02 Score=28.64 Aligned_cols=113 Identities=16% Similarity=0.064 Sum_probs=63.9
Q ss_pred CCccccccCHHHHHHHHHcCC-----CcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeE
Q 012808 322 HAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVT 396 (456)
Q Consensus 322 ~Ak~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nva 396 (456)
+++.+..=|-.+|.++...+- -+-.+.+ |..+|..+...|-.+-..--|++---....+..... . ..-+
T Consensus 122 ~~~~~~~~STa~Aak~v~~~~~~~~AAIas~~a---A~~YgL~il~~~I~D~~~N~TRF~vl~r~~~~~~~~--~-~~kT 195 (279)
T COG0077 122 GVEIEYTSSTAEAAKLVAEGPDETVAAIASELA---AELYGLDILAENIEDEPNNRTRFLVLSRRKPPSVSD--G-PEKT 195 (279)
T ss_pred CceEEEcCCHHHHHHHHHhCCCcCeeEEcCHHH---HHHcCcHhHhhcccCCCCCeEEEEEEeccCCCCcCC--C-CceE
Confidence 456666677788888876532 2333344 466788877777665333446653211000000000 0 0111
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE-----eCCCEEEEEEcCC
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA-----TSEVSLSLTLDPS 443 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is-----tSe~sIsi~V~~~ 443 (456)
.|-+. +.+.||.+.+++..|+++|||.-.|- +..-.--|.||=+
T Consensus 196 sl~f~---~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e 244 (279)
T COG0077 196 SLIFS---VPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE 244 (279)
T ss_pred EEEEE---cCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe
Confidence 11112 34899999999999999999988884 2345556666644
No 197
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=40.22 E-value=25 Score=26.26 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred HHHHHHHcCCceEEEeecCCc--cccCCCCC
Q 012808 291 ATTIGKALGLQEIQVWKDVDG--VLTCDPNI 319 (456)
Q Consensus 291 Aa~lA~~L~A~~l~i~TDV~G--V~taDP~~ 319 (456)
+.+++....+..++-|+|-+| +|+..|--
T Consensus 3 ll~l~~~a~aa~vYk~~D~~G~v~ysd~P~~ 33 (60)
T PF13511_consen 3 LLLLAASAAAAEVYKWVDENGVVHYSDTPPP 33 (60)
T ss_pred HHHHhHHHhhccEEEEECCCCCEEECccCCC
Confidence 344455555679999999999 58888753
No 198
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=39.58 E-value=1.3e+02 Score=26.77 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeecc
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlg 283 (456)
-|+.++++.|++.|++..... ++.+ +...+.+.+.. +++...+.|++|-.|.+
T Consensus 27 ~n~~~l~~~l~~~G~~v~~~~-----~v~D-----------d~~~i~~~l~~-~~~~~DliIttGG~g~g---------- 79 (144)
T TIGR00177 27 SNGPLLAALLEEAGFNVSRLG-----IVPD-----------DPEEIREILRK-AVDEADVVLTTGGTGVG---------- 79 (144)
T ss_pred CcHHHHHHHHHHCCCeEEEEe-----ecCC-----------CHHHHHHHHHH-HHhCCCEEEECCCCCCC----------
Confidence 356677888999998765421 2222 22345555543 34456788888844432
Q ss_pred CCCChhHHHHHHHHc
Q 012808 284 RGGSDLTATTIGKAL 298 (456)
Q Consensus 284 RGGSD~tAa~lA~~L 298 (456)
..|++...++.+.
T Consensus 80 --~~D~t~~ai~~~g 92 (144)
T TIGR00177 80 --PRDVTPEALEELG 92 (144)
T ss_pred --CCccHHHHHHHhC
Confidence 2699999999876
No 199
>PRK03673 hypothetical protein; Provisional
Probab=39.19 E-value=1.6e+02 Score=31.20 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeecc
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlg 283 (456)
-|+..++..|.+.|++..... .+. | +.+.+.+.+... ++...+.|++|-+|.+.
T Consensus 21 tN~~~la~~L~~~G~~v~~~~-----~v~-D----------~~~~i~~~l~~a-~~~~DlVI~tGGlGpt~--------- 74 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRN-----TVG-D----------NLDALVAILRER-SQHADVLIVNGGLGPTS--------- 74 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEE-----EcC-C----------CHHHHHHHHHHH-hccCCEEEEcCCCCCCC---------
Confidence 477788899999999865421 221 2 234455555442 45567888888666442
Q ss_pred CCCChhHHHHHHHHcCCc
Q 012808 284 RGGSDLTATTIGKALGLQ 301 (456)
Q Consensus 284 RGGSD~tAa~lA~~L~A~ 301 (456)
-|+|.-.+|.++|-.
T Consensus 75 ---dD~t~~avA~a~g~~ 89 (396)
T PRK03673 75 ---DDLSALAAATAAGEG 89 (396)
T ss_pred ---cccHHHHHHHHcCCC
Confidence 589999999999953
No 200
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.90 E-value=44 Score=26.48 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.6
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
.+.||-++++++.|+++|||+..|-
T Consensus 8 ~~~~g~L~~iL~~f~~~~inl~~Ie 32 (74)
T cd04929 8 KNEVGGLAKALKLFQELGINVVHIE 32 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEE
Confidence 3579999999999999999999985
No 201
>COG3602 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.46 E-value=22 Score=30.95 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=36.2
Q ss_pred EEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe
Q 012808 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (456)
Q Consensus 388 ~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist 431 (456)
++...--+.+|++.-..-+...|+.+.+-..|+++||+..+++.
T Consensus 63 Gl~~~~~~~lITL~VhSsLeaVGltAA~ataLa~aGis~Nvvaa 106 (134)
T COG3602 63 GLSYSAVCRLITLNVHSSLEAVGLTAAFATALAEAGISCNVVAA 106 (134)
T ss_pred CCCccceeeeEEeehhhhhhhhhHHHHHHHHHHHcCcccchhhh
Confidence 44555667888887766778899999999999999999998863
No 202
>PRK08198 threonine dehydratase; Provisional
Probab=38.29 E-value=76 Score=33.22 Aligned_cols=57 Identities=28% Similarity=0.306 Sum_probs=41.7
Q ss_pred EEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC---------CCEEEEEEcCCCcCc
Q 012808 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS---------EVSLSLTLDPSKLWS 447 (456)
Q Consensus 388 ~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS---------e~sIsi~V~~~d~~~ 447 (456)
+.........+.|. +.+.||.++++++.++++|+||.-|... ...+++.|+..+..+
T Consensus 320 gl~~~gr~~~l~v~---l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~ 385 (404)
T PRK08198 320 GLVAAGRYLKLRVR---LPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEH 385 (404)
T ss_pred hhhhcCCEEEEEEE---eCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHH
Confidence 33445666777776 7789999999999999999999876532 366777776654333
No 203
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=36.78 E-value=76 Score=22.38 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.9
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
.+.||.++++.+.|+++++++.-+.
T Consensus 6 ~~~~~~l~~i~~~l~~~~~~i~~~~ 30 (71)
T cd04876 6 IDRPGLLADITTVIAEEKINILSVN 30 (71)
T ss_pred eccCcHHHHHHHHHHhCCCCEEEEE
Confidence 3578999999999999999998764
No 204
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.24 E-value=49 Score=27.36 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=27.4
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEc
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLD 441 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~ 441 (456)
.+.||-+.++++.|+++|||+..|.+- .-...|.|+
T Consensus 22 ~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD 62 (90)
T cd04931 22 KEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN 62 (90)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE
Confidence 357999999999999999999998521 233555565
No 205
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=35.97 E-value=51 Score=33.12 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=29.1
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist 431 (456)
...|++.|. +.||+++++.+.|+++|+||.-+++
T Consensus 6 ~~vitv~G~---DrpGIVa~Vt~~La~~g~NI~d~s~ 39 (286)
T PRK06027 6 RYVLTLSCP---DRPGIVAAVSNFLYEHGGNIVDADQ 39 (286)
T ss_pred eEEEEEECC---CCCcHHHHHHHHHHHCCCCEEEcee
Confidence 356888875 5899999999999999999988763
No 206
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=35.78 E-value=45 Score=31.58 Aligned_cols=32 Identities=3% Similarity=0.175 Sum_probs=27.5
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
..++++|. +.||++.++-+.|+++||||.-.+
T Consensus 96 ~~v~v~G~---DrPGIV~~vT~~la~~~iNI~~L~ 127 (190)
T PRK11589 96 VWVQVEVA---DSPHLIERFTALFDSHHMNIAELV 127 (190)
T ss_pred EEEEEEEC---CCCCHHHHHHHHHHHcCCChhheE
Confidence 45678875 589999999999999999998775
No 207
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.63 E-value=69 Score=25.68 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=26.8
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV 429 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~I 429 (456)
++|.|.+ .+.||.+.++..+|.+.|++|...
T Consensus 2 TvveV~~---~DRpGLL~~i~~~l~~~~l~I~~A 32 (75)
T cd04897 2 SVVTVQC---RDRPKLLFDVVCTLTDMDYVVFHA 32 (75)
T ss_pred EEEEEEe---CCcCcHHHHHHHHHHhCCeEEEEE
Confidence 5677775 469999999999999999999875
No 208
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=33.78 E-value=4.7e+02 Score=26.86 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=22.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHcCCceE
Q 012808 195 DYLVSFGECMSTRIFAAYLNKIGVKAR 221 (456)
Q Consensus 195 d~i~s~GE~lsa~lla~~L~~~Gi~a~ 221 (456)
|..-.-||.+++++++..|...|++-+
T Consensus 99 Dk~~~~repIsaklvA~lL~~aG~drv 125 (314)
T COG0462 99 DKAFKPREPISAKLVANLLETAGADRV 125 (314)
T ss_pred CcccCCCCCEeHHHHHHHHHHcCCCeE
Confidence 334356999999999999999999753
No 209
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=33.60 E-value=44 Score=24.96 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=22.7
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
..+.||.++++.+.|+++|+|+..+.
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~nI~~~~ 31 (69)
T cd04901 6 HKNVPGVLGQINTILAEHNINIAAQY 31 (69)
T ss_pred ecCCCcHHHHHHHHHHHcCCCHHHHh
Confidence 45789999999999999999986664
No 210
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=33.24 E-value=1.6e+02 Score=26.44 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=33.0
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCc
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKL 445 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~ 445 (456)
+....|.++++++.+++..+||..|.++ -.++++.++.+.+
T Consensus 79 ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm 124 (150)
T COG4492 79 LEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSM 124 (150)
T ss_pred EhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhh
Confidence 4467899999999999999999999754 3667777776644
No 211
>PRK01215 competence damage-inducible protein A; Provisional
Probab=33.11 E-value=2e+02 Score=28.56 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeec
Q 012808 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (456)
Q Consensus 203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttl 282 (456)
.-|+..++..|++.|++..... ++. | +...+.+.+.. +++...+.|++|-+|.+.
T Consensus 22 dtn~~~l~~~L~~~G~~v~~~~-----~v~-D----------d~~~I~~~l~~-a~~~~DlVIttGG~g~t~-------- 76 (264)
T PRK01215 22 NTNASWIARRLTYLGYTVRRIT-----VVM-D----------DIEEIVSAFRE-AIDRADVVVSTGGLGPTY-------- 76 (264)
T ss_pred EhhHHHHHHHHHHCCCeEEEEE-----EeC-C----------CHHHHHHHHHH-HhcCCCEEEEeCCCcCCh--------
Confidence 3467778889999999864421 222 2 12344555543 244557888888565442
Q ss_pred cCCCChhHHHHHHHHcCCc
Q 012808 283 GRGGSDLTATTIGKALGLQ 301 (456)
Q Consensus 283 gRGGSD~tAa~lA~~L~A~ 301 (456)
-|+|.-.++.+++-+
T Consensus 77 ----dD~t~eaia~~~g~~ 91 (264)
T PRK01215 77 ----DDKTNEGFAKALGVE 91 (264)
T ss_pred ----hhhHHHHHHHHhCCC
Confidence 699999999999854
No 212
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.80 E-value=56 Score=28.31 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=22.6
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
.+.||-+.++++.|+++|||+..|-
T Consensus 49 ~~~pGsL~~iL~~Fa~~gINLt~IE 73 (115)
T cd04930 49 KEGFSSLSRILKVFETFEAKIHHLE 73 (115)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEE
Confidence 3579999999999999999999995
No 213
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.41 E-value=83 Score=24.56 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhCCCcEEEEE-----eCCCEEEEEEcCCCcCc-HHHHhhhcC
Q 012808 410 GFLAKVFSTFEDLGISVDVVA-----TSEVSLSLTLDPSKLWS-RELIQQASV 456 (456)
Q Consensus 410 g~~akif~~L~~~gI~V~~Is-----tSe~sIsi~V~~~d~~~-~~l~~~~~~ 456 (456)
.-+-+.-+.|.++||++.+++ ++.-.+++.++.+|... .+++++.++
T Consensus 12 ~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~~~~i 64 (73)
T PF11823_consen 12 HDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLEKIKEILEENGI 64 (73)
T ss_pred HHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHHHCCC
Confidence 345677889999999999996 56688889998877766 777777653
No 214
>PRK00549 competence damage-inducible protein A; Provisional
Probab=28.03 E-value=2.9e+02 Score=29.30 Aligned_cols=70 Identities=23% Similarity=0.262 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeec
Q 012808 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (456)
Q Consensus 203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttl 282 (456)
.-|+..++..|++.|++.... .++. | +...+.+.+.. ..+...+.|++|-+|.+.
T Consensus 19 DtN~~~L~~~L~~~G~~v~~~-----~~v~-D----------d~~~I~~~l~~-a~~~~DlVItTGGlGpt~-------- 73 (414)
T PRK00549 19 NTNAQFLSEKLAELGIDVYHQ-----TVVG-D----------NPERLLSALEI-AEERSDLIITTGGLGPTK-------- 73 (414)
T ss_pred EhhHHHHHHHHHHCCCeEEEE-----EEeC-C----------CHHHHHHHHHH-hccCCCEEEECCCCCCCC--------
Confidence 346777888999999986542 1222 2 22344555543 235567888888666542
Q ss_pred cCCCChhHHHHHHHHcCCc
Q 012808 283 GRGGSDLTATTIGKALGLQ 301 (456)
Q Consensus 283 gRGGSD~tAa~lA~~L~A~ 301 (456)
-|+|.-.++.+++.+
T Consensus 74 ----dD~t~ea~a~~~g~~ 88 (414)
T PRK00549 74 ----DDLTKETVAKFLGRE 88 (414)
T ss_pred ----CccHHHHHHHHhCCC
Confidence 689999999999854
No 215
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=27.35 E-value=6.2e+02 Score=26.21 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=73.3
Q ss_pred CCceEEEeecCCccccCCCCCCCCCccccccCH-HHHHHHHHcCCCc---ch------HHHHHHHHhCCCCEEEecCCCC
Q 012808 299 GLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF-DEAAELAYFGAQV---LH------PQSMRPAREGDIPVRVKNSYNP 368 (456)
Q Consensus 299 ~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~-~Ea~eLa~~Ga~v---lh------p~a~~~a~~~~Ipv~I~n~~~p 368 (456)
.++.+++|.--+| . .-.-+| +++.+....|++| +| |.-.+.|.+.|.. +-+...|
T Consensus 67 ~~e~liIgia~~g--G-----------~~~~~~~~~i~eAl~~G~nVvsglh~~ls~dp~~~k~A~~~G~r--l~dvR~p 131 (339)
T COG3367 67 LAEALIIGIAPPG--G-----------VLPESWREYIVEALEAGMNVVSGLHSFLSDDPEFVKLAERTGVR--LDDVRKP 131 (339)
T ss_pred CcceEEEEeecCC--C-----------cCcHHHHHHHHHHHHhCchhhhhhHHHhhcChHHHHHHHHcCCe--eEeeccC
Confidence 3478888865444 1 122245 5566777778875 44 6667778888873 3333443
Q ss_pred CCCceEEeeccCCccceeeEEEEecCeEEEEEEeCCCC-CchhHHHHHHHHHHhCCCcEEEEEeCCCEEEE
Q 012808 369 NAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRML-GQYGFLAKVFSTFEDLGISVDVVATSEVSLSL 438 (456)
Q Consensus 369 ~~~GT~I~~~~~~~~~~i~~I~~~~nvalIsv~g~~m~-~~~g~~akif~~L~~~gI~V~~IstSe~sIsi 438 (456)
. +++-.. .++..-+.+...|.+.|+++. +..-.+-.+-+++.+.|++..+++|.+.+|-+
T Consensus 132 ~--~~l~~~--------~tG~~~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgil~ 192 (339)
T COG3367 132 P--LDLEYL--------CTGMARKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGILI 192 (339)
T ss_pred c--cchhhh--------ccCcccccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceeeEE
Confidence 2 222111 123333445778889998764 44445677889999999999999999988765
No 216
>PRK06382 threonine dehydratase; Provisional
Probab=27.26 E-value=1.6e+02 Score=31.01 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=43.3
Q ss_pred EEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe---------CCCEEEEEEcCCCcCcH-HHHh
Q 012808 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT---------SEVSLSLTLDPSKLWSR-ELIQ 452 (456)
Q Consensus 388 ~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist---------Se~sIsi~V~~~d~~~~-~l~~ 452 (456)
+.........+.|. +.+.||.++++.+.|.++|+||.-+.. ....+.|.|+..+..+. ++++
T Consensus 323 ~~~~~~~~~rl~v~---v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~ 394 (406)
T PRK06382 323 ELENLGQLVRIECN---IPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILN 394 (406)
T ss_pred HHHhcCCEEEEEEE---cCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHH
Confidence 44445667777776 778999999999999999999965532 23567777776543332 4443
No 217
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=26.86 E-value=1.9e+02 Score=26.39 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhcc-ccCCceEEEcCCCcCCCCCCceee
Q 012808 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW-ITDLAIPIVTGFLGKAWRTCAITT 281 (456)
Q Consensus 203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l-l~~~~VpVv~Gfig~~~~~G~vtt 281 (456)
.-|...+++.|++.|++... .+++.+ +...+.+.+.+.+ .+...+.|++|-.|.+
T Consensus 21 d~n~~~l~~~L~~~G~~v~~-----~~iv~D-----------d~~~i~~~l~~~~~~~~~DlVIttGGtg~g-------- 76 (163)
T TIGR02667 21 DTSGQYLVERLTEAGHRLAD-----RAIVKD-----------DIYQIRAQVSAWIADPDVQVILITGGTGFT-------- 76 (163)
T ss_pred CCcHHHHHHHHHHCCCeEEE-----EEEcCC-----------CHHHHHHHHHHHHhcCCCCEEEECCCcCCC--------
Confidence 44667788889999987543 223322 2344555554421 1345788888855443
Q ss_pred ccCCCChhHHHHHHHHcC
Q 012808 282 LGRGGSDLTATTIGKALG 299 (456)
Q Consensus 282 lgRGGSD~tAa~lA~~L~ 299 (456)
.-|++.-.++..++
T Consensus 77 ----~~D~t~eal~~l~~ 90 (163)
T TIGR02667 77 ----GRDVTPEALEPLFD 90 (163)
T ss_pred ----CCCCcHHHHHHHHC
Confidence 26888888888776
No 218
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=26.64 E-value=39 Score=31.19 Aligned_cols=49 Identities=22% Similarity=0.129 Sum_probs=27.4
Q ss_pred EEeecCCccccCCCCCCCC--CccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCC
Q 012808 304 QVWKDVDGVLTCDPNIHPH--AKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366 (456)
Q Consensus 304 ~i~TDV~GV~taDP~~v~~--Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~ 366 (456)
.+.+|+|||+|. .+++=+ .......+ .-+--++..+++.|+++.|.++.
T Consensus 9 ~~v~d~dGv~td-g~~~~~~~g~~~~~~~-------------~~D~~~~~~L~~~Gi~laIiT~k 59 (169)
T TIGR02726 9 LVILDVDGVMTD-GRIVINDEGIESRNFD-------------IKDGMGVIVLQLCGIDVAIITSK 59 (169)
T ss_pred EEEEeCceeeEC-CeEEEcCCCcEEEEEe-------------cchHHHHHHHHHCCCEEEEEECC
Confidence 367899999984 332211 11111111 11223667778888888777543
No 219
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=26.54 E-value=2.3e+02 Score=24.53 Aligned_cols=69 Identities=23% Similarity=0.365 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeec
Q 012808 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (456)
Q Consensus 203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttl 282 (456)
.-|..++++.|++.|....... ++. | +...+.+.+.. +.++..+.|++|-.|.+
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~-----~v~-D----------d~~~I~~~l~~-~~~~~dliittGG~g~g--------- 70 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYV-----IVP-D----------DKEAIKEALRE-ALERADLVITTGGTGPG--------- 70 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEE-----EeC-C----------CHHHHHHHHHH-HHhCCCEEEEcCCCCCC---------
Confidence 4567778889999998764421 222 1 23345555443 34455688888744433
Q ss_pred cCCCChhHHHHHHHHcCC
Q 012808 283 GRGGSDLTATTIGKALGL 300 (456)
Q Consensus 283 gRGGSD~tAa~lA~~L~A 300 (456)
-.|++-..++..++.
T Consensus 71 ---~~D~t~~~l~~~~~~ 85 (135)
T smart00852 71 ---PDDVTPEAVAEALGK 85 (135)
T ss_pred ---CCcCcHHHHHHHhCC
Confidence 268889999888763
No 220
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=26.41 E-value=2.3e+02 Score=23.83 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=43.0
Q ss_pred CceeeccCCCChhHHHHHHHHcCC--ceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHH
Q 012808 277 CAITTLGRGGSDLTATTIGKALGL--QEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAR 354 (456)
Q Consensus 277 G~vttlgRGGSD~tAa~lA~~L~A--~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~ 354 (456)
|.+..+|+|+|...|-.++..|.. ..+.++.|...++..-....++ ..+ .-+++.|..----++++.|+
T Consensus 1 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-d~v--------i~iS~sG~t~~~~~~~~~a~ 71 (128)
T cd05014 1 GKVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPG-DVV--------IAISNSGETDELLNLLPHLK 71 (128)
T ss_pred CeEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCC-CEE--------EEEeCCCCCHHHHHHHHHHH
Confidence 357788999999999999988752 2344444433222111111111 110 11122233333346888899
Q ss_pred hCCCCEEEec
Q 012808 355 EGDIPVRVKN 364 (456)
Q Consensus 355 ~~~Ipv~I~n 364 (456)
+.|+|+....
T Consensus 72 ~~g~~vi~iT 81 (128)
T cd05014 72 RRGAPIIAIT 81 (128)
T ss_pred HCCCeEEEEe
Confidence 9999976553
No 221
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=25.05 E-value=1.2e+02 Score=32.20 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=31.5
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCcHHHHhh
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWSRELIQQ 453 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~~~l~~~ 453 (456)
.+.||.++++.++|+++||||..+. .....-..+++-++-...+++++
T Consensus 346 ~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~~~~~~~~~~ 395 (409)
T PRK11790 346 ENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDADYAEEALDA 395 (409)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCCCCcHHHHHH
Confidence 5789999999999999999996553 22323333345554444455543
No 222
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=24.79 E-value=2.3e+02 Score=30.11 Aligned_cols=71 Identities=17% Similarity=0.347 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccC
Q 012808 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (456)
Q Consensus 205 sa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgR 284 (456)
|...+++.|++.|..... .|++.+ +++.+.+.+.+. +++..+.|++|-... |+
T Consensus 204 N~~~l~a~l~~~G~e~~~-----~giv~D-----------d~~~l~~~i~~a-~~~~DviItsGG~Sv----G~------ 256 (404)
T COG0303 204 NSYMLAALLERAGGEVVD-----LGIVPD-----------DPEALREAIEKA-LSEADVIITSGGVSV----GD------ 256 (404)
T ss_pred CHHHHHHHHHHcCCceee-----ccccCC-----------CHHHHHHHHHHh-hhcCCEEEEeCCccC----cc------
Confidence 566788899999987644 334332 234555555543 344678888873322 22
Q ss_pred CCChhHHHHHHHHcCCceEEEe
Q 012808 285 GGSDLTATTIGKALGLQEIQVW 306 (456)
Q Consensus 285 GGSD~tAa~lA~~L~A~~l~i~ 306 (456)
.|++-.++...+| ++.+|
T Consensus 257 --~D~v~~~l~~~lG--~v~~~ 274 (404)
T COG0303 257 --ADYVKAALERELG--EVLFH 274 (404)
T ss_pred --hHhHHHHHHhcCC--cEEEE
Confidence 7999999998888 78888
No 223
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=24.65 E-value=48 Score=30.69 Aligned_cols=52 Identities=23% Similarity=0.196 Sum_probs=31.1
Q ss_pred EEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCC
Q 012808 304 QVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN 367 (456)
Q Consensus 304 ~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~ 367 (456)
.+.+||||++|. -+ ++-.-.-+ ++-.| .+.+=-.++.+++.||.+-|..+.+
T Consensus 10 Lli~DVDGvLTD-G~------ly~~~~Ge---e~KaF--nv~DG~Gik~l~~~Gi~vAIITGr~ 61 (170)
T COG1778 10 LLILDVDGVLTD-GK------LYYDENGE---EIKAF--NVRDGHGIKLLLKSGIKVAIITGRD 61 (170)
T ss_pred EEEEeccceeec-Ce------EEEcCCCc---eeeee--eccCcHHHHHHHHcCCeEEEEeCCC
Confidence 467899999984 22 21111111 12111 3444458888999999988887655
No 224
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.41 E-value=1e+02 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.0
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEE
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVV 429 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~I 429 (456)
+.+.||+.+++..+|+.+|+||.-.
T Consensus 8 ~~Dr~gLFa~iag~L~~~~LnI~~A 32 (68)
T cd04928 8 AGDKPKLLSQLSSLLGDLGLNIAEA 32 (68)
T ss_pred ECCCcchHHHHHHHHHHCCCceEEE
Confidence 3469999999999999999998763
No 225
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=24.10 E-value=3.5e+02 Score=23.49 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeecc
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlg 283 (456)
-|..++.+.|++.|.+..... ++. | +...+.+.+.. ++++..+.|++|-.|.+
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~-----~v~-D----------d~~~i~~~i~~-~~~~~DlvittGG~g~g---------- 71 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAG-----VVP-D----------DADSIRAALIE-ASREADLVLTTGGTGVG---------- 71 (133)
T ss_pred chHHHHHHHHHHCCCEEEEee-----ecC-C----------CHHHHHHHHHH-HHhcCCEEEECCCCCCC----------
Confidence 467778888999998754321 221 1 23445555544 24456788888855543
Q ss_pred CCCChhHHHHHHHHc
Q 012808 284 RGGSDLTATTIGKAL 298 (456)
Q Consensus 284 RGGSD~tAa~lA~~L 298 (456)
.-|++.-.++...
T Consensus 72 --~~D~t~~ai~~~g 84 (133)
T cd00758 72 --RRDVTPEALAELG 84 (133)
T ss_pred --CCcchHHHHHHhc
Confidence 2688888888865
No 226
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.85 E-value=1.7e+02 Score=22.13 Aligned_cols=42 Identities=10% Similarity=0.058 Sum_probs=31.4
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE-----eCCCEEEEEEcCCCcCc
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA-----TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is-----tSe~sIsi~V~~~d~~~ 447 (456)
+...||-+.++.+.+++ |.||..+. .....+.+.++-.+-.+
T Consensus 5 ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~ 51 (68)
T cd04885 5 FPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDRED 51 (68)
T ss_pred CCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHH
Confidence 66799999999999999 99988775 23455667776555433
No 227
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=23.80 E-value=1.7e+02 Score=30.24 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=39.2
Q ss_pred EEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe---------CCCEEEEEEcCCC
Q 012808 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT---------SEVSLSLTLDPSK 444 (456)
Q Consensus 388 ~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist---------Se~sIsi~V~~~d 444 (456)
+.........+.+. +.+.||.++++.+.++++|.||.-|.. ....|.+.|+..+
T Consensus 298 gl~~~gr~~~l~v~---l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~ 360 (380)
T TIGR01127 298 GLVKSGRKVRIETV---LPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG 360 (380)
T ss_pred HHHhCCCEEEEEEE---eCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC
Confidence 44445555667776 778999999999999999999987621 2345777776654
No 228
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=23.53 E-value=4.2e+02 Score=28.13 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccC
Q 012808 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (456)
Q Consensus 205 sa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgR 284 (456)
|+..++..|++.|++..... ++. | +...+.+.+... ++...+.|++|-+|.+.
T Consensus 21 N~~~l~~~L~~~G~~v~~~~-----~v~-D----------d~~~i~~~l~~a-~~~~DlVIttGGlgpt~---------- 73 (413)
T TIGR00200 21 NAQWLADFLAHQGLPLSRRT-----TVG-D----------NPERLKTIIRIA-SERADVLIFNGGLGPTS---------- 73 (413)
T ss_pred hHHHHHHHHHHCCCeEEEEE-----EeC-C----------CHHHHHHHHHHH-hcCCCEEEEcCCCCCCC----------
Confidence 66678888999999865421 222 2 233455555432 34567888888665442
Q ss_pred CCChhHHHHHHHHcCCc
Q 012808 285 GGSDLTATTIGKALGLQ 301 (456)
Q Consensus 285 GGSD~tAa~lA~~L~A~ 301 (456)
-|.+.-.++.++|-+
T Consensus 74 --dD~t~eava~~~g~~ 88 (413)
T TIGR00200 74 --DDLTAETIATAKGEP 88 (413)
T ss_pred --cccHHHHHHHHhCCC
Confidence 689999999999854
No 229
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.37 E-value=2.5e+02 Score=22.36 Aligned_cols=40 Identities=8% Similarity=0.029 Sum_probs=27.0
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE---eCCCEEEEEEcCCC
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA---TSEVSLSLTLDPSK 444 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is---tSe~sIsi~V~~~d 444 (456)
+...||-+.++.++|+..+|+-.... .....+.+.++-.+
T Consensus 8 ipD~PG~L~~ll~~l~~anI~~~~y~~~~~~~~~v~i~ie~~~ 50 (85)
T cd04906 8 IPERPGSFKKFCELIGPRNITEFNYRYADEKDAHIFVGVSVAN 50 (85)
T ss_pred cCCCCcHHHHHHHHhCCCceeEEEEEccCCCeeEEEEEEEeCC
Confidence 67789999999999997777622222 24566667676555
No 230
>PRK11898 prephenate dehydratase; Provisional
Probab=23.31 E-value=4.9e+02 Score=26.02 Aligned_cols=115 Identities=13% Similarity=0.052 Sum_probs=65.7
Q ss_pred CCCCccccccCHHHHHHHHHcCC----CcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCe
Q 012808 320 HPHAKPVPYLTFDEAAELAYFGA----QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNV 395 (456)
Q Consensus 320 v~~Ak~i~~ls~~Ea~eLa~~Ga----~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nv 395 (456)
.|+.+.+..-|..+|.++...+. -.+-++. -|..+|.++.-.|-.+...-=|++---....... ..-...+..
T Consensus 121 ~p~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~--aa~~ygL~il~~~I~d~~~N~TRF~vi~~~~~~~-~~~~~~~kt 197 (283)
T PRK11898 121 LPGAELEPANSTAAAAQYVAEHPDEPIAAIASEL--AAELYGLEILAEDIQDYPNNRTRFWLLGRKKPPP-PLRTGGDKT 197 (283)
T ss_pred CCCCEEEEcCchHHHHHHHhcCCCCCeEEECCHH--HHHHcCCcEehhcCCCCCccceEEEEEEcCcccC-CCCCCCCeE
Confidence 35778888888899888876432 1333332 2466799888887665433446553211000000 000001112
Q ss_pred EEEEEEeCCCCC-chhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEc
Q 012808 396 TMLDIVSTRMLG-QYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLD 441 (456)
Q Consensus 396 alIsv~g~~m~~-~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~ 441 (456)
+++ +. +.+ .||.+.++++.|+++|||+-.|-+- .-...|.|+
T Consensus 198 sli-f~---l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd 245 (283)
T PRK11898 198 SLV-LT---LPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFID 245 (283)
T ss_pred EEE-EE---eCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEE
Confidence 222 11 223 4999999999999999999998432 234566665
No 231
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=22.08 E-value=3.2e+02 Score=24.35 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhcccc--CCceEEEcCCCcCCCCCCceee
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAITT 281 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~--~~~VpVv~Gfig~~~~~G~vtt 281 (456)
-|..++++.|++.|++... .+++.+ +.+.+.+.+... ++ ...+.|++|-.+.+
T Consensus 20 ~n~~~l~~~l~~~G~~v~~-----~~~v~D-----------d~~~i~~~l~~~-~~~~~~DlVittGG~s~g-------- 74 (152)
T cd00886 20 RSGPALVELLEEAGHEVVA-----YEIVPD-----------DKDEIREALIEW-ADEDGVDLILTTGGTGLA-------- 74 (152)
T ss_pred chHHHHHHHHHHcCCeeee-----EEEcCC-----------CHHHHHHHHHHH-HhcCCCCEEEECCCcCCC--------
Confidence 3566788889999987543 223222 234455554432 34 45788888855443
Q ss_pred ccCCCChhHHHHHHHHcC
Q 012808 282 LGRGGSDLTATTIGKALG 299 (456)
Q Consensus 282 lgRGGSD~tAa~lA~~L~ 299 (456)
.-|++...++..++
T Consensus 75 ----~~D~t~~al~~~~~ 88 (152)
T cd00886 75 ----PRDVTPEATRPLLD 88 (152)
T ss_pred ----CCcCcHHHHHHHhC
Confidence 15888888888874
No 232
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=22.05 E-value=1.1e+02 Score=28.08 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=29.7
Q ss_pred EEEEEeCCCCCc---hhHHHHHHHHHHhCCCcEEEEE-eCCCEE
Q 012808 397 MLDIVSTRMLGQ---YGFLAKVFSTFEDLGISVDVVA-TSEVSL 436 (456)
Q Consensus 397 lIsv~g~~m~~~---~g~~akif~~L~~~gI~V~~Is-tSe~sI 436 (456)
.|+++|..|.+. .+|+.++...|.+.||+.+..+ ++++.|
T Consensus 105 ~IsLvGC~l~~~~~~~~fa~~f~~~L~~~gi~~~V~A~~~~v~V 148 (157)
T PF11713_consen 105 KISLVGCSLADNNKQESFALQFAQALKKQGINASVSAYTSEVAV 148 (157)
T ss_dssp EEEEESSS-S-TTGGGSHHHHHHHHHHHHHHCEEEEEESS-EEE
T ss_pred EEEEEEecccCCcccccHHHHHHHHHHhcCCcceEEEEEeeEEE
Confidence 346777777654 8899999999999999999876 666655
No 233
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=21.77 E-value=6.6e+02 Score=25.73 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcC
Q 012808 147 ELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIG 217 (456)
Q Consensus 147 ~l~~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~G 217 (456)
..+.|++....+-+-+.++...+...+.++..-.-.+. ++-.++..++.+++.=..-.+..+...|...|
T Consensus 233 ~a~~Ir~~mF~Fedl~~l~~~~l~~ll~~v~~~~L~~A-Lkga~~~~~~~il~nmS~R~a~~l~eel~~~g 302 (339)
T PRK05686 233 LAEKIKDLMFVFEDLVDLDDRSIQRLLREVDNDVLALA-LKGASEELREKFLSNMSKRAAEMLREDLEALG 302 (339)
T ss_pred HHHHHHHHhcCHHHHhcCCHHHHHHHHHhCCHHHHHHH-HCCCCHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555555544444445566667777776644222222 24567889999976543445555666666543
Done!