Query 012808
Match_columns 456
No_of_seqs 293 out of 2150
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cdq_A Aspartokinase; aspartat 100.0 1.6E-77 5.5E-82 636.6 40.0 386 59-446 6-392 (510)
2 3c1m_A Probable aspartokinase; 100.0 1.9E-70 6.3E-75 579.6 39.4 359 81-446 1-371 (473)
3 2j0w_A Lysine-sensitive aspart 100.0 2E-70 6.8E-75 575.3 31.8 352 81-445 3-358 (449)
4 3tvi_A Aspartokinase; structur 100.0 1.7E-70 5.9E-75 574.2 30.6 339 80-446 2-349 (446)
5 3l76_A Aspartokinase; alloster 100.0 3.6E-59 1.2E-63 505.5 27.7 307 81-447 2-325 (600)
6 3ab4_A Aspartokinase; aspartat 100.0 1.1E-57 3.9E-62 475.7 32.7 312 81-452 2-327 (421)
7 2j4j_A Uridylate kinase; trans 100.0 8.3E-31 2.8E-35 251.0 16.5 205 81-377 1-225 (226)
8 2jjx_A Uridylate kinase, UMP k 100.0 5E-30 1.7E-34 250.2 22.0 216 80-378 12-247 (255)
9 1ybd_A Uridylate kinase; alpha 100.0 3.7E-30 1.2E-34 248.3 19.7 214 80-376 7-238 (239)
10 2a1f_A Uridylate kinase; PYRH, 100.0 9.1E-30 3.1E-34 247.1 21.0 216 80-378 8-241 (247)
11 1gs5_A Acetylglutamate kinase; 100.0 1.7E-29 5.8E-34 246.6 18.4 232 82-376 4-257 (258)
12 4a7w_A Uridylate kinase; trans 100.0 4.6E-29 1.6E-33 241.5 21.2 214 80-375 7-239 (240)
13 1z9d_A Uridylate kinase, UK, U 100.0 1E-28 3.5E-33 240.5 22.3 218 80-379 7-242 (252)
14 2ap9_A NAG kinase, acetylgluta 100.0 2.1E-29 7E-34 251.3 17.7 239 81-379 26-292 (299)
15 3ek6_A Uridylate kinase; UMPK 100.0 4.3E-28 1.5E-32 235.1 19.7 215 80-377 9-241 (243)
16 3nwy_A Uridylate kinase; allos 100.0 5.3E-28 1.8E-32 238.8 18.9 216 78-376 48-280 (281)
17 2j5v_A Glutamate 5-kinase; pro 100.0 5.2E-28 1.8E-32 247.5 16.1 227 81-379 5-259 (367)
18 2ij9_A Uridylate kinase; struc 100.0 2.1E-27 7.2E-32 226.2 18.4 202 81-376 1-219 (219)
19 2brx_A Uridylate kinase; UMP k 99.9 1.2E-27 4E-32 232.1 15.3 206 80-376 19-243 (244)
20 2ogx_A Molybdenum storage prot 99.9 1.7E-27 5.7E-32 235.1 15.1 216 82-378 41-272 (276)
21 2va1_A Uridylate kinase; UMPK, 99.9 1.2E-26 4E-31 226.6 20.6 214 81-376 25-255 (256)
22 2rd5_A Acetylglutamate kinase- 99.9 7.5E-27 2.5E-31 232.7 15.8 236 81-376 37-297 (298)
23 2bty_A Acetylglutamate kinase; 99.9 1.3E-26 4.6E-31 229.0 15.3 233 81-377 22-279 (282)
24 2egx_A Putative acetylglutamat 99.9 1.1E-25 3.8E-30 221.1 19.5 236 82-376 1-269 (269)
25 2ako_A Glutamate 5-kinase; str 99.9 1.9E-26 6.4E-31 224.1 13.4 215 81-368 2-232 (251)
26 3ll9_A Isopentenyl phosphate k 99.9 4.5E-26 1.5E-30 224.0 15.0 159 203-376 89-266 (269)
27 2ogx_B Molybdenum storage prot 99.9 5.4E-25 1.9E-29 216.4 21.1 216 82-377 38-269 (270)
28 3d40_A FOMA protein; fosfomyci 99.9 3.1E-26 1E-30 227.1 11.6 222 81-376 24-266 (286)
29 2v5h_A Acetylglutamate kinase; 99.9 1.5E-25 5E-30 225.7 16.6 237 81-378 50-311 (321)
30 2buf_A Acetylglutamate kinase; 99.9 2E-24 6.7E-29 215.5 19.1 234 81-378 27-297 (300)
31 3l86_A Acetylglutamate kinase; 99.9 9.1E-25 3.1E-29 215.5 13.3 227 81-377 37-278 (279)
32 1e19_A Carbamate kinase-like c 99.9 1.9E-24 6.4E-29 217.0 12.0 237 81-377 3-314 (314)
33 3ll5_A Gamma-glutamyl kinase r 99.9 3E-23 1E-27 201.7 17.2 223 80-375 3-248 (249)
34 3zzh_A Acetylglutamate kinase; 99.9 1.2E-21 4.1E-26 195.6 12.0 232 79-378 47-302 (307)
35 3d2m_A Putative acetylglutamat 99.9 5.1E-21 1.7E-25 200.8 16.1 233 81-378 44-304 (456)
36 2e9y_A Carbamate kinase; trans 99.8 5.9E-21 2E-25 191.7 13.4 234 81-377 5-315 (316)
37 2we5_A Carbamate kinase 1; arg 99.8 4E-20 1.4E-24 185.2 16.4 115 257-376 178-309 (310)
38 3k4o_A Isopentenyl phosphate k 99.8 4.2E-20 1.4E-24 181.2 14.3 148 203-377 98-264 (266)
39 4ab7_A Protein Arg5,6, mitocho 99.8 2.2E-20 7.5E-25 195.5 12.9 231 80-378 48-302 (464)
40 3s6g_A N-acetylglutamate kinas 99.8 7.9E-20 2.7E-24 191.5 12.2 234 79-378 57-311 (460)
41 3s6k_A Acetylglutamate kinase; 99.7 1.8E-19 6.3E-24 189.0 0.4 234 79-378 60-314 (467)
42 4axs_A Carbamate kinase; oxido 99.6 6.5E-15 2.2E-19 148.3 14.6 115 257-376 199-331 (332)
43 3kzf_A Carbamate kinase; argin 99.6 1.2E-14 4E-19 144.7 14.7 120 256-377 183-316 (317)
44 2dtj_A Aspartokinase; protein- 99.1 3.7E-10 1.3E-14 103.9 11.9 105 343-447 27-147 (178)
45 3mah_A Aspartokinase; aspartat 99.0 6.3E-10 2.2E-14 100.2 7.8 71 381-452 4-74 (157)
46 4go7_X Aspartokinase; transfer 99.0 1.2E-09 4E-14 102.5 9.9 62 386-447 106-167 (200)
47 3s1t_A Aspartokinase; ACT doma 98.8 1.2E-08 4.1E-13 94.2 8.9 105 343-447 28-148 (181)
48 2re1_A Aspartokinase, alpha an 98.8 1.6E-08 5.5E-13 91.9 9.3 103 344-447 38-155 (167)
49 2dt9_A Aspartokinase; protein- 98.7 1.3E-08 4.3E-13 92.5 6.8 60 388-447 88-147 (167)
50 4go7_X Aspartokinase; transfer 98.7 1.4E-08 4.7E-13 95.2 6.7 76 370-447 10-92 (200)
51 2re1_A Aspartokinase, alpha an 98.6 3.6E-08 1.2E-12 89.5 5.3 68 383-452 13-86 (167)
52 3s1t_A Aspartokinase; ACT doma 98.5 1.2E-07 3.9E-12 87.5 7.6 68 383-452 4-79 (181)
53 2dt9_A Aspartokinase; protein- 98.5 8.9E-08 3E-12 86.9 5.4 67 384-452 5-79 (167)
54 3l76_A Aspartokinase; alloster 98.5 1.3E-07 4.5E-12 102.3 6.4 61 387-447 519-579 (600)
55 3ab4_A Aspartokinase; aspartat 98.4 6.8E-07 2.3E-11 92.7 10.4 103 344-447 277-396 (421)
56 3mah_A Aspartokinase; aspartat 98.3 2E-07 7E-12 83.7 3.8 60 386-447 79-140 (157)
57 3tvi_A Aspartokinase; structur 98.3 4.8E-07 1.6E-11 94.5 7.0 103 343-447 312-428 (446)
58 2dtj_A Aspartokinase; protein- 98.3 4.9E-07 1.7E-11 82.9 5.8 60 384-445 4-70 (178)
59 3c1m_A Probable aspartokinase; 98.3 2.9E-06 9.9E-11 89.3 11.4 161 283-447 264-458 (473)
60 2cdq_A Aspartokinase; aspartat 98.1 2.4E-06 8.2E-11 90.7 6.7 103 342-447 354-473 (510)
61 2j0w_A Lysine-sensitive aspart 97.8 8.5E-06 2.9E-10 85.2 3.0 60 386-447 377-438 (449)
62 2f06_A Conserved hypothetical 97.3 0.00039 1.3E-08 60.8 6.9 59 397-455 71-132 (144)
63 2f06_A Conserved hypothetical 92.6 0.19 6.5E-06 43.4 6.1 36 405-440 13-52 (144)
64 1zhv_A Hypothetical protein AT 82.6 4.4 0.00015 35.0 7.9 70 372-446 43-112 (134)
65 2fgc_A Acetolactate synthase, 78.7 3.6 0.00012 37.8 6.3 49 405-453 36-90 (193)
66 1zvp_A Hypothetical protein VC 77.7 4.1 0.00014 35.1 6.1 56 390-446 66-121 (133)
67 2ko1_A CTR148A, GTP pyrophosph 74.1 4.7 0.00016 30.8 5.1 32 397-431 7-38 (88)
68 1zpv_A ACT domain protein; str 73.5 5.2 0.00018 31.0 5.3 33 395-430 5-37 (91)
69 2pc6_A Probable acetolactate s 69.2 4 0.00014 36.5 4.0 39 405-443 11-55 (165)
70 2f1f_A Acetolactate synthase i 68.3 5.1 0.00017 35.7 4.5 39 405-443 10-54 (164)
71 2nyi_A Unknown protein; protei 58.8 11 0.00038 34.0 5.0 35 394-431 92-126 (195)
72 3kbq_A Protein TA0487; structu 56.6 29 0.001 30.9 7.3 69 204-301 23-91 (172)
73 1ygy_A PGDH, D-3-phosphoglycer 54.0 59 0.002 34.0 10.4 25 406-430 462-486 (529)
74 1u8s_A Glycine cleavage system 50.6 34 0.0012 30.3 6.9 33 395-430 93-125 (192)
75 1u8s_A Glycine cleavage system 49.2 33 0.0011 30.4 6.6 45 395-442 6-54 (192)
76 2qmx_A Prephenate dehydratase; 46.2 86 0.0029 30.1 9.3 114 321-443 120-250 (283)
77 2nyi_A Unknown protein; protei 40.7 53 0.0018 29.3 6.6 44 395-441 5-52 (195)
78 1mkz_A Molybdenum cofactor bio 37.8 70 0.0024 28.1 6.7 68 203-299 27-96 (172)
79 3p96_A Phosphoserine phosphata 37.1 26 0.0009 34.9 4.3 34 395-431 12-45 (415)
80 1y5e_A Molybdenum cofactor bio 35.7 87 0.003 27.3 7.0 67 204-299 31-99 (169)
81 2fts_A Gephyrin; gephyrin, neu 33.2 93 0.0032 31.5 7.6 73 204-306 208-280 (419)
82 3nrb_A Formyltetrahydrofolate 33.1 53 0.0018 31.6 5.5 35 394-431 6-40 (287)
83 3o1l_A Formyltetrahydrofolate 32.9 50 0.0017 32.1 5.3 34 396-432 23-56 (302)
84 3n0v_A Formyltetrahydrofolate 31.1 53 0.0018 31.6 5.1 34 396-432 9-42 (286)
85 3obi_A Formyltetrahydrofolate 30.3 47 0.0016 32.0 4.6 33 396-431 7-39 (288)
86 2pjk_A 178AA long hypothetical 29.9 1.3E+02 0.0045 26.5 7.2 67 204-299 40-108 (178)
87 3mwb_A Prephenate dehydratase; 29.6 2.2E+02 0.0075 27.7 9.3 111 321-442 127-251 (313)
88 1sc6_A PGDH, D-3-phosphoglycer 28.7 65 0.0022 32.5 5.5 25 406-430 339-363 (404)
89 3lou_A Formyltetrahydrofolate 27.9 51 0.0018 31.8 4.4 35 395-432 10-44 (292)
90 2is8_A Molybdopterin biosynthe 26.9 91 0.0031 27.0 5.5 66 205-299 22-89 (164)
91 3rfq_A Pterin-4-alpha-carbinol 24.4 1.4E+02 0.0048 26.7 6.4 69 203-299 48-116 (185)
92 1g8l_A Molybdopterin biosynthe 24.3 2.4E+02 0.0082 28.4 8.8 71 204-306 204-274 (411)
93 1y7p_A Hypothetical protein AF 23.8 73 0.0025 29.6 4.4 26 406-431 12-37 (223)
94 3iwt_A 178AA long hypothetical 23.6 1.8E+02 0.006 25.3 6.8 67 204-298 40-107 (178)
95 2g2c_A Putative molybdenum cof 21.9 1.2E+02 0.0042 26.2 5.4 67 204-299 25-96 (167)
96 1uz5_A MOEA protein, 402AA lon 21.8 2.1E+02 0.0072 28.7 7.8 71 204-306 207-277 (402)
97 3ewi_A N-acylneuraminate cytid 21.8 1E+02 0.0035 26.7 4.8 50 304-366 11-61 (168)
98 3pzy_A MOG; ssgcid, seattle st 20.9 1.5E+02 0.0052 25.7 5.8 65 205-299 28-93 (164)
99 3k5p_A D-3-phosphoglycerate de 20.5 88 0.003 31.8 4.6 35 406-440 351-386 (416)
100 3mtj_A Homoserine dehydrogenas 20.4 1.4E+02 0.0048 30.5 6.2 27 406-432 367-393 (444)
No 1
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=100.00 E-value=1.6e-77 Score=636.63 Aligned_cols=386 Identities=81% Similarity=1.195 Sum_probs=338.4
Q ss_pred cceeeeccccccccccccCCCcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcC
Q 012808 59 ARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG 138 (456)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~ 138 (456)
...+++++++.|+ .+..+++..|+|+|||||||+|++++++|+++|.+..+++++||||||||+||.|+++++.+..++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~V~KFGGTSva~~e~i~~va~iI~~~~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~ 84 (510)
T 2cdq_A 6 IVRAVLEEKKTEA-ITEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCG 84 (510)
T ss_dssp --------------------CCCCEEEEECTGGGSSHHHHHHHHHHHHHCTTCCEEEEECCSTTHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcccchhh-hhccCCCCCeEEEEECCcccCCHHHHHHHHHHHHhccCCCEEEEEcCCCCCchHHHHHHHHHhhcc
Confidence 3456787764443 345567778999999999999999999999999765556889999999999999999988765544
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCC
Q 012808 139 VTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGV 218 (456)
Q Consensus 139 ~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi 218 (456)
....++.+.++.++++|..++++|+.+...|+.++++|++++.++....+.+++.+|+++++||++|+.+++++|+++|+
T Consensus 85 ~~~~~~~~~~~~i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi 164 (510)
T 2cdq_A 85 VSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGV 164 (510)
T ss_dssp TTTGGGCHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 44445566899999999999999998888899999999999999998999999999999999999999999999999999
Q ss_pred ceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCC-CCceeeccCCCChhHHHHHHHH
Q 012808 219 KARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWR-TCAITTLGRGGSDLTATTIGKA 297 (456)
Q Consensus 219 ~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~-~G~vttlgRGGSD~tAa~lA~~ 297 (456)
++.++++++++++|+++|+++++.+.++.++.+.+...|++.+.|||++||+|.+ + +|.++|+||||||++|+++|.+
T Consensus 165 ~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~-~~~g~ittlgrGgsD~tAa~lA~~ 243 (510)
T 2cdq_A 165 KARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKG-WKTGAVTTLGRGGSDLTATTIGKA 243 (510)
T ss_dssp CEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEE-TTTCCEEECCTTHHHHHHHHHHHH
T ss_pred CEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccC-CCCCceEEeCCCChHHHHHHHHHH
Confidence 9999999999999999999888876666666666665455788999999999998 6 8999999999999999999999
Q ss_pred cCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEee
Q 012808 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377 (456)
Q Consensus 298 L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~ 377 (456)
|+|+++++||||||||++||+++|+|++|++|||+|+.||+++|+++|||+|++||+++|||++|+|+++|+.+||+|.+
T Consensus 244 l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~ 323 (510)
T 2cdq_A 244 LGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITK 323 (510)
T ss_dssp HTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEES
T ss_pred cCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCCCCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccCCccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW 446 (456)
Q Consensus 378 ~~~~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~ 446 (456)
..++....|++|+.++|+++|+|.+.+|.+.+||++++|+.|+++||||+||++|+.+|||+|+.+++.
T Consensus 324 ~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~sse~sis~~v~~~~~~ 392 (510)
T 2cdq_A 324 TRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLW 392 (510)
T ss_dssp CCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEECCGGGS
T ss_pred cccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeCCCeEEEEEechHhh
Confidence 654344579999999999999999999999999999999999999999999999999999999987753
No 2
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=100.00 E-value=1.9e-70 Score=579.64 Aligned_cols=359 Identities=37% Similarity=0.642 Sum_probs=326.1
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC-CCC-CcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSF-PNE-RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~-~~~-~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
||+|+|||||||+|++++++|+++|.+. .++ +++||||||||+||.|+++++.+..++ ...++.+.++.++++|..+
T Consensus 1 ~~~V~KFGGtSv~~~~~i~~va~ii~~~~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 79 (473)
T 3c1m_A 1 MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVR-DIAKVGDFIKFIREKHYKA 79 (473)
T ss_dssp -CEEEEECTTTTSSHHHHHHHHHHHHHHHTTCSCEEEEECCSTTHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhhcCCCCEEEEEcCChhhHHHHHHHHHHhhccc-ChHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999753 345 789999999999999999887664311 1234667899999999999
Q ss_pred HHHhCCCH---H----HHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808 159 VDELGIDR---S----IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (456)
Q Consensus 159 ~~~l~~~~---~----~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii 231 (456)
+++|..+. + .|+..+++|++++.++..+++++++.+|+++++||++|+.+++++|+++|++|+++++++++++
T Consensus 80 ~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~~~~i~ 159 (473)
T 3c1m_A 80 IEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGII 159 (473)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTEE
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEchheeEE
Confidence 99998762 3 6888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcce-eecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 232 TTDDFTNADI-LEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 232 t~~~~~~a~i-~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
|+++|+++++ ...++..+.. +++.+.|||++||+|.+ ++|.++|+||||+|++|+++|.+|+|+++++|||||
T Consensus 160 t~~~~~~~~~~~~~~~~~i~~-----ll~~g~ipVv~G~~g~~-~~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVd 233 (473)
T 3c1m_A 160 TDNNFGSARVKRLEVKERLLP-----LLKEGIIPVVTGFIGTT-EEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVS 233 (473)
T ss_dssp ECSCTTSCCEEEECHHHHHHH-----HHHTTCEEEEESSEEEE-TTSCEEECCTTTHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred EccCCCCccccHhhhHHHHHH-----HHhCCcEEEEeCCcccC-CCCCEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCC
Confidence 9999999988 5666665554 24678999999999998 589999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEE
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIV 390 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~ 390 (456)
|||++||+++|++++|+++||+|+.+|+++|+++|||+++++|.++|||++|.|+++|+.+||+|.+...+....+++|+
T Consensus 234 Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~~m~~~a~~~a~~~gi~v~I~~~~~~~~~GT~i~~~~~~~~~~v~gIa 313 (473)
T 3c1m_A 234 GVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMSDSIVKAIS 313 (473)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHHTCCEEEEETTSTTSCCEEEESCCCCCTTSCCEEE
T ss_pred cceeCCCCCCCCCeEecccCHHHHHHHHhcCCcchHHHHHHHHHHcCCEEEEEecCCCCCceEEEeccccccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999986543445799999
Q ss_pred EecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW 446 (456)
Q Consensus 391 ~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~ 446 (456)
.++|+++|+|+|.+|.+.||+++++|++|+++||||+||+ +|+.+|+|+|++++..
T Consensus 314 ~~~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse~~Is~~V~~~d~~ 371 (473)
T 3c1m_A 314 TIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVD 371 (473)
T ss_dssp EEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEEEGGGHH
T ss_pred ccCCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEechHHH
Confidence 9999999999999999999999999999999999999999 8899999999987643
No 3
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=100.00 E-value=2e-70 Score=575.29 Aligned_cols=352 Identities=36% Similarity=0.532 Sum_probs=310.0
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (456)
.|+|+|||||||+|++++++|+++|.+.. ++++||||||||+||.|+++++.+. ..++.+.++.++++|..+++
T Consensus 3 ~~~V~KFGGTSv~~~e~i~~va~ii~~~~-~~~vVVvSA~g~~Td~L~~~~~~~~-----~~~~~~~i~~i~~~~~~i~~ 76 (449)
T 2j0w_A 3 EIVVSKFGGTSVADFDAMNRSADIVLSDA-NVRLVVLSASAGITNLLVALAEGLE-----PGERFEKLDAIRNIQFAILE 76 (449)
T ss_dssp CCEEEEECSGGGSSHHHHHHHHHHHTSCT-TEEEEEECCCTTHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEECCccCCCHHHHHHHHHHHHhcC-CCEEEEeCCCCchHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999997643 4789999999999999999775431 12345568889999999999
Q ss_pred HhCCCH---HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC
Q 012808 161 ELGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (456)
Q Consensus 161 ~l~~~~---~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~ 237 (456)
+|..+. +.|+..+++| +.+.++....+ +++.+|+++++||++|+.+++.+|+++|+++.+++++++ ++|+++|+
T Consensus 77 ~l~~~~~~~~~i~~~~~~l-~~l~~~~~~~~-~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~~~ 153 (449)
T 2j0w_A 77 RLRYPNVIREEIERLLENI-TVLAEAAALAT-SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFG 153 (449)
T ss_dssp TSSSTHHHHHHHHHHHHHH-HHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCTT
T ss_pred HhcccHHHHHHHHHHHHHH-HHHhhhhccCc-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCCCC
Confidence 998764 3577888888 55677766555 599999999999999999999999999999999999999 88999999
Q ss_pred Ccceeecch-HHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCC
Q 012808 238 NADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (456)
Q Consensus 238 ~a~i~~~~~-~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD 316 (456)
++++..... .+..+.+ ..+++. .|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++||||||||++|
T Consensus 154 ~~~~~~~~~~~~~~~~l-~~l~~~-~IpVv~Gf~g~~-~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~D 230 (449)
T 2j0w_A 154 RAEPDIAALAELAALQL-LPRLNE-GLVITQGFIGSE-NKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTD 230 (449)
T ss_dssp SCCBCHHHHHHHHHHHT-HHHHHH-SEEEEESSEEEC-TTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSC
T ss_pred CccccHhHhHHHHHHHH-HHHhcC-CEEEEeCCeeeC-CCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCC
Confidence 887754322 2222222 223333 499999999998 589999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeE
Q 012808 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVT 396 (456)
Q Consensus 317 P~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nva 396 (456)
||++|+|++|+++||+|+.+|+++|+|+|||+|+++|+++|||++|+|+++|+.+||+|.+... ....|++|+.++|++
T Consensus 231 Pr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a~~~gi~v~I~~~~~p~~~GT~I~~~~~-~~~~v~gIa~~~~~~ 309 (449)
T 2j0w_A 231 PRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTE-NPPLFRALALRRNQT 309 (449)
T ss_dssp TTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCCS-SCCSEEEEEEEEEEE
T ss_pred CCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHHHHCCCeEEEEECCCCCCCeeEEecccc-cccccccceeeCCEE
Confidence 9999999999999999999999999999999999999999999999999999999999987642 345699999999999
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCc
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~ 445 (456)
+|+|.+.+|.+.+||++++|++|+++||+|+||++|+.+|||+|++++.
T Consensus 310 ~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss~~sis~~v~~~~~ 358 (449)
T 2j0w_A 310 LLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGS 358 (449)
T ss_dssp EEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEETTEEEEEECCCCC
T ss_pred EEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeCCCeEEEEEecccc
Confidence 9999999999999999999999999999999999999999999998764
No 4
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=1.7e-70 Score=574.16 Aligned_cols=339 Identities=31% Similarity=0.475 Sum_probs=289.3
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCc-------CchHHHHhhHHHHhcCCCccchHHHHHHHH
Q 012808 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~-------vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~ 152 (456)
.+|+|+|||||||+|+++|++|+++|.+. +++++|||||||+ +||.|+++++.+..+ .++.+.++.++
T Consensus 2 ~~m~V~KFGGtSva~~e~i~~Va~iI~~~-~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~----~~~~~~~~~i~ 76 (446)
T 3tvi_A 2 LKIVVTKFGGSSLADSNQFKKVKGIIDSD-ANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNG----IPFDDVFKLIS 76 (446)
T ss_dssp --CEEEEECGGGGSSHHHHHHHHHHHTTC-TTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTT----CCCHHHHHHHH
T ss_pred CccEEEEeCccccCCHHHHHHHHHHHHhc-CCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcC----ccHHHHHHHHH
Confidence 37899999999999999999999999874 4678999999995 999999998876543 34678899999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEe
Q 012808 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (456)
Q Consensus 153 ~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit 232 (456)
++|..++++|+.+... .++++++++.+. ..+.+|+|+|+||++|+.||+++| ++.+++++++++.+
T Consensus 77 ~~~~~i~~~L~~~~~~----~~~l~~~~~~l~-----~~~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~ 142 (446)
T 3tvi_A 77 QRYTEIVSELNIDMDI----AYYLEKVKKNIE-----NGASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFD 142 (446)
T ss_dssp HHHHHHHHHHTCCSCH----HHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBC
T ss_pred HHHHHHHHHhcccHHH----HHHHHHHHHHHh-----cCccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeC
Confidence 9999999999876543 233333333321 126789999999999999999996 58899999985544
Q ss_pred ecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (456)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (456)
+ +++.+.+.++..+.+ +++.+.|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++|||||||
T Consensus 143 ~---~~~~~~~~~~~~l~~-----~l~~~~v~Vv~Gf~g~~-~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGv 213 (446)
T 3tvi_A 143 K---SGCFDEKKSYEKIKE-----KVLSCNKAVIPGFYGSS-FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGF 213 (446)
T ss_dssp C-----CBCHHHHHHHHHH-----HTTTCSSEECCCSEEEC-TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred C---CCceehHhhHHHHHH-----HHhcCCeEEeeCceecC-CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 4 445444444444433 35678999999999998 58999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccc--eeeEEE
Q 012808 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKA--VLTSIV 390 (456)
Q Consensus 313 ~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~--~i~~I~ 390 (456)
||+||+++|+|++|+++||+|+.||+++|+++|||+|++||+++|||++|+|+++|+.+||+|.+..+..+. .|++|+
T Consensus 214 yt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~i~~~~~p~~~GT~i~~~~~~~~~~~~v~gIa 293 (446)
T 3tvi_A 214 LMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIA 293 (446)
T ss_dssp BSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEEEEETTBTTSCCEEEECTTTSCCCTTCCCEEE
T ss_pred CCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEEEecCCCCCCCCEEEecCCcccccCcceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999987644333 799999
Q ss_pred EecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW 446 (456)
Q Consensus 391 ~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~ 446 (456)
.++|+++|+|.+.+|.+.|||++++|+.|+++||+|+||++++.+|+|+|+++++.
T Consensus 294 ~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~~~~is~~V~~~d~~ 349 (446)
T 3tvi_A 294 GKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGVDSVSLVIEDCKLD 349 (446)
T ss_dssp EEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEETTEEEEEEEHHHHT
T ss_pred ecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecCCCEEEEEEecchHH
Confidence 99999999999999999999999999999999999999999999999999988764
No 5
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=100.00 E-value=3.6e-59 Score=505.52 Aligned_cols=307 Identities=30% Similarity=0.450 Sum_probs=264.5
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
+++|+|||||||+|++++++++++|... .+.+++||+||||++||.|++++...
T Consensus 2 ~~iViK~GGssl~~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~------------------------ 57 (600)
T 3l76_A 2 ALIVQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQI------------------------ 57 (600)
T ss_dssp CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHH------------------------
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhh------------------------
Confidence 4799999999999999999999999864 24578999999999999998754311
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
. ...+++.+|+++++||++|+.+++.+|+++|+++++++++++++++++.+++
T Consensus 58 ----~-----------------------~~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~ 110 (600)
T 3l76_A 58 ----S-----------------------PNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSR 110 (600)
T ss_dssp ----C-----------------------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-----
T ss_pred ----c-----------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCC
Confidence 0 1235678899999999999999999999999999999999998999888888
Q ss_pred cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCC--ceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCC
Q 012808 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTC--AITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (456)
Q Consensus 239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G--~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD 316 (456)
+++...++..+.+. ++.+.|||++||+|.+ ++| .++||||||||++|+++|.+|+|++++|||||||||++|
T Consensus 111 ~~~~~~~~~~i~~l-----l~~g~IpVv~Gf~g~~-~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~d 184 (600)
T 3l76_A 111 ARILEIRPDRLEHH-----LREGKVVVVAGFQGIS-SVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTD 184 (600)
T ss_dssp --CCEEEECCHHHH-----HTTTCEEEEECEEEC-----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSC
T ss_pred ceeccccHHHHHHH-----HhCCCEEEEECCeecC-CCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCC
Confidence 87766555444432 4678999999999998 589 999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC--------CccceeeE
Q 012808 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--------MSKAVLTS 388 (456)
Q Consensus 317 P~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--------~~~~~i~~ 388 (456)
|+++|+|++|+++||+|+.+|+++|+++|||+|+++|+++|||++|+|++++ .+||+|.+... +....|++
T Consensus 185 Pr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~~~~-~~GT~I~~~~~~~~~~~~~~~~~~v~g 263 (600)
T 3l76_A 185 PRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD-EPGTKVVAPPVQNRSLVGLEIAKAVDG 263 (600)
T ss_dssp TTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEETTCC-SCCEEEECCCCCSCCCCCCBSSCSCCE
T ss_pred CCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEECCCC-CCCeEEecCCccccccccccccCcceE
Confidence 9999999999999999999999999999999999999999999999999985 79999987653 23457999
Q ss_pred EEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCC-----CEEEEEEcCCCcCc
Q 012808 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-----VSLSLTLDPSKLWS 447 (456)
Q Consensus 389 I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe-----~sIsi~V~~~d~~~ 447 (456)
|++++|+++|++. +|.+.+|+++++|+.|+++||+|+||++|+ .+|+|+|+.+++..
T Consensus 264 i~~~~~~~~i~i~--~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~ 325 (600)
T 3l76_A 264 VEYDADQAKVALL--RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNT 325 (600)
T ss_dssp EEEECCCEEEEEE--EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHH
T ss_pred EEeeCCEEEEEEe--CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHH
Confidence 9999999999998 689999999999999999999999999876 68999999988654
No 6
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=100.00 E-value=1.1e-57 Score=475.67 Aligned_cols=312 Identities=36% Similarity=0.525 Sum_probs=243.8
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
.++|+|||||||.++++++++++.|... .+.++|||+||+|++||.|++.....
T Consensus 2 ~~iViK~GGssl~~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~------------------------ 57 (421)
T 3ab4_A 2 ALVVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAV------------------------ 57 (421)
T ss_dssp CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHH------------------------
T ss_pred CeEEEEEChhHhCCHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhh------------------------
Confidence 4799999999999999999999999764 34578899999999999998743210
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
....+++.+|.+++.||.+|+.+++++|+++|+++.++++.++++++++.|++
T Consensus 58 ---------------------------~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~ 110 (421)
T 3ab4_A 58 ---------------------------NPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGN 110 (421)
T ss_dssp ---------------------------CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC------------
T ss_pred ---------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCC
Confidence 01235788899999999999999999999999999999999998899888888
Q ss_pred cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCC-CceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT-CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (456)
Q Consensus 239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~-G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (456)
+++...+...+.+ +++.+.|||++||+|.+ ++ |+++|+||||||++|+++|.+|+|++++|||||||||++||
T Consensus 111 ~~v~~~~~~~i~~-----~l~~g~ipVv~g~~g~~-~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dP 184 (421)
T 3ab4_A 111 ARIVDVTPGRVRE-----ALDEGKICIVAGFQGVN-KETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADP 184 (421)
T ss_dssp -----CCHHHHHH-----HHHTTCEEEC-------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCT
T ss_pred eeechhhHHHHHH-----HHhCCCEEEEeCCcCcC-CCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCC
Confidence 8776666555543 24678999999999998 58 99999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeec-cC--CccceeeEEEEecC
Q 012808 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS-RD--MSKAVLTSIVLKRN 394 (456)
Q Consensus 318 ~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~-~~--~~~~~i~~I~~~~n 394 (456)
+++|++++|++|||+|+.+|+++|++++||+|+++|.++|||++|+|+++| .+||+|.++ .. +....|++|+.++|
T Consensus 185 r~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~~~~~~~i~~i~~~~~ 263 (421)
T 3ab4_A 185 RIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSN-DPGTLIAGSMEDIPVEEAVLTGVATDKS 263 (421)
T ss_dssp TTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESSSC-CCCEEECSCGGGSCTTTCCCCEEEEECS
T ss_pred CCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCcCC-CCCeEEEecCcccccccCccceEEeeCC
Confidence 999999999999999999999999999999999999999999999999999 799999876 32 23446999999999
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCC-----CEEEEEEcCCCcCc-HHHHh
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSE-----VSLSLTLDPSKLWS-RELIQ 452 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe-----~sIsi~V~~~d~~~-~~l~~ 452 (456)
+++|+|.+ |.+.||+++++|+.|+++||||+||+ +|+ .+|+|+|+.++... .++++
T Consensus 264 ~~~i~v~~--~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~ 327 (421)
T 3ab4_A 264 EAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILK 327 (421)
T ss_dssp EEEEEEEE--EESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHH
T ss_pred EEEEEEec--cCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHH
Confidence 99999997 78899999999999999999999996 453 68999999887643 44444
No 7
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.97 E-value=8.3e-31 Score=251.00 Aligned_cols=205 Identities=18% Similarity=0.222 Sum_probs=159.2
Q ss_pred ceEEEEeCccccC--CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLA--SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (456)
Q Consensus 81 ~~~V~KFGGsSv~--s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 156 (456)
+++|+||||+++. +++.++++++.|.... +.++|+|+|| |.+++.+++
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~~i~~l~~~g~~vvlV~gg-G~~~~~~~~--------------------------- 52 (226)
T 2j4j_A 1 MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGG-GSTARRYIK--------------------------- 52 (226)
T ss_dssp CEEEEEECTHHHHTCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHH---------------------------
T ss_pred CeEEEEeccccccCCCHHHHHHHHHHHHHHHhCCCeEEEEECc-chHhchhHH---------------------------
Confidence 4689999999999 8999999999997642 3455666665 555554432
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC
Q 012808 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (456)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~ 236 (456)
++++++. ++...|.+.++|+.+++.|++.+|+++|+++ +
T Consensus 53 -~~~~~g~-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~---~------------ 91 (226)
T 2j4j_A 53 -LAREIGI-------------------------GEAYLDLLGIWASRLNAYLVMFSLQDLAYMH---V------------ 91 (226)
T ss_dssp -HHHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC---C------------
T ss_pred -HHHHhCC-------------------------CcccHHHHHHHHHHHHHHHHHHHHHHhCCCC---C------------
Confidence 2233433 2345677888899999999999999999854 1
Q ss_pred CCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCC
Q 012808 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (456)
Q Consensus 237 ~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD 316 (456)
..++..+.+ +++.+.|||++| | . + .+++|++|+.+|.+|+|++++|||||||||++|
T Consensus 92 ------~~~~~~i~~-----ll~~g~ipVi~g--g-~-~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~d 148 (226)
T 2j4j_A 92 ------PQSLEEFIQ-----DWSHGKVVVTGG--F-Q-P--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKD 148 (226)
T ss_dssp ------CSSHHHHHH-----HHTTSSBEEECC--C-S-T--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSC
T ss_pred ------cCCHHHHHH-----HHHCCCEEEEcC--C-C-C--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCC
Confidence 012333332 357889999998 3 2 1 345999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHc-CCC------cchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEee
Q 012808 317 PNIHPHAKPVPYLTFDEAAELAYF-GAQ------VLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (456)
Q Consensus 317 P~~v~~Ak~i~~ls~~Ea~eLa~~-Ga~------vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (456)
|+++|++++|++++|+|+.+++.. |++ ++|++++.+|.++|+|++|.|+++|+ ..||+|.+
T Consensus 149 P~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 149 PRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp TTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred CCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 999999999999999999999644 666 89999999999999999999987764 46898864
No 8
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.97 E-value=5e-30 Score=250.21 Aligned_cols=216 Identities=25% Similarity=0.344 Sum_probs=164.0
Q ss_pred cceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s-------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~ 150 (456)
..++|+||||+++.+ ++.++++++.|.... +.++|+|+|| |...+.+.
T Consensus 12 ~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~Gg-G~~~~~~~---------------------- 68 (255)
T 2jjx_A 12 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-GNIFRGHL---------------------- 68 (255)
T ss_dssp CSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCHHH----------------------
T ss_pred CCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECc-hHHHhhhH----------------------
Confidence 367999999999995 789999999997642 3456777776 65544321
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHH-cCCceEEeccccee
Q 012808 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNK-IGVKARQYDAFDIG 229 (456)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~-~Gi~a~~ld~~~~~ 229 (456)
++.++++.. ..+.+..++..+++.||+.+|++ .|+++.++++.+.+
T Consensus 69 --------~~~~g~~~~-------------------------~~~~~~~~~~~~~~~ll~~~l~~~~Gi~a~~l~~~~~~ 115 (255)
T 2jjx_A 69 --------AEEWGIDRV-------------------------EADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFN 115 (255)
T ss_dssp --------HHHTTCCHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEESSCCC
T ss_pred --------HHHcCCCCC-------------------------ChHHHhHHHHHHHHHHHHHHHHhhcCCceEEecHHHcC
Confidence 112333211 01112223347899989999999 99999999988764
Q ss_pred EEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEee-c
Q 012808 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-D 308 (456)
Q Consensus 230 iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~T-D 308 (456)
++++ ......+ . .+++.|.|||++| | + .++.++ +|++|+.+|.+|+|++++||| |
T Consensus 116 ~v~~---------~~~~~~~----~-~lL~~g~IpVi~g--g-~-g~~~vt------tD~~Aa~lA~~l~Ad~liilT~D 171 (255)
T 2jjx_A 116 AVAE---------PYIRLRA----V-HHLDNGYIVIFGG--G-N-GQPFVT------TDYPSVQRAIEMNSDAILVAKQG 171 (255)
T ss_dssp SSSE---------ECCHHHH----H-HHHHTTCEEEEES--T-T-SCSSCC------SHHHHHHHHHHHTCSEEEEEESS
T ss_pred cccC---------cccHHHH----H-HHHhCCcEEEEeC--C-C-CCCccc------hHHHHHHHHHhcCCCEEEEEeCC
Confidence 3322 1122222 2 2457899999997 3 2 133333 699999999999999999999 9
Q ss_pred CCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEeec
Q 012808 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRS 378 (456)
Q Consensus 309 V~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (456)
|||||++||+++|++++|++|+|+|+.++ |.++|||.|+++++++|+|++|.|+++|+ ..||+|.++
T Consensus 172 VdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 172 VDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp CCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred cCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 99999999999999999999999988775 89999999999999999999999999984 689999874
No 9
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.97 E-value=3.7e-30 Score=248.29 Aligned_cols=214 Identities=21% Similarity=0.293 Sum_probs=163.7
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (456)
Q Consensus 80 ~~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~ 150 (456)
..++|+||||+++. +.+.++++++.|.... +.++|+|+|+ |...+..
T Consensus 7 ~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~Gg-G~~~~g~----------------------- 62 (239)
T 1ybd_A 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGG-GNIFRGV----------------------- 62 (239)
T ss_dssp CSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHH-----------------------
T ss_pred CCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-cHHHhch-----------------------
Confidence 36799999999999 4689999999998653 3355556654 3221110
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (456)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i 230 (456)
+ ++.++.+ ++..|.+.++|+++|+.++..+|.+.|+++.++++.+.+.
T Consensus 63 ----~---~~~~~~~-------------------------~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~ 110 (239)
T 1ybd_A 63 ----S---AQAGSMD-------------------------RATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQ 110 (239)
T ss_dssp ----H---HHHTTSC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSS
T ss_pred ----h---HHHcCCC-------------------------CccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecccc
Confidence 0 2233332 2334567778999999999999999999999998876533
Q ss_pred EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
+.. +|. ..+ .. .+++.|.|||++||.|. .++++|++|+.+|.+|+|++++||||||
T Consensus 111 ~~~-~~~--------~~~----~~-~ll~~g~ipVv~g~~g~----------~~~~~D~~Aa~lA~~l~Ad~liilTdVd 166 (239)
T 1ybd_A 111 IAE-TYA--------RPK----AI-QYLEEGKVVIFAAGTGN----------PFFTTDTAAALRGAEMNCDVMLKATNVD 166 (239)
T ss_dssp SCE-ECC--------HHH----HH-HHHHTTCEEEEESTTSS----------TTCCHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred ccc-chh--------HHH----HH-HHHhCCcEEEEECCccC----------CCCCcHHHHHHHHHhcCCCEEEEeeCCC
Confidence 221 111 111 12 23578999999986542 1356999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (456)
|||++||+++|+|++|++++|+|+.++ |+++|||+++++|.++|+|++|.|+++|+ ..||+|.
T Consensus 167 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~ 238 (239)
T 1ybd_A 167 GVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238 (239)
T ss_dssp SCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred ccCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEc
Confidence 999999999999999999999998874 88999999999999999999999998874 4688875
No 10
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.97 E-value=9.1e-30 Score=247.13 Aligned_cols=216 Identities=21% Similarity=0.278 Sum_probs=159.2
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (456)
Q Consensus 80 ~~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~ 150 (456)
..++|+||||+++. +.+.++++++.|.... +.++|+|+|+ |.+.+.+.
T Consensus 8 ~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGg-G~~~~~~~---------------------- 64 (247)
T 2a1f_A 8 YKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGG-GNLFRGAK---------------------- 64 (247)
T ss_dssp CSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCCHH----------------------
T ss_pred ccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-ChHhcchh----------------------
Confidence 46799999999999 5689999999998643 2344555554 55543221
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (456)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i 230 (456)
++.++. +++..|.+.++|+++|+.++..+|.+.|+++.++++.+.+.
T Consensus 65 --------~~~~g~-------------------------~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~ 111 (247)
T 2a1f_A 65 --------LAKAGM-------------------------NRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNG 111 (247)
T ss_dssp --------HHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred --------HHHcCC-------------------------CCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccccccc
Confidence 112332 23344667788999999999999999999999998876532
Q ss_pred EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
+.+ .| ...++ ..+++.+.|||++|+.| . .++++|++|+.+|.+|+|++++||||||
T Consensus 112 ~~~-~~--------~~~~~-----~~ll~~g~ipVi~~~~g------~----~~~~~D~~Aa~lA~~l~Ad~liilTDVd 167 (247)
T 2a1f_A 112 ICD-TY--------NWSEA-----IKMLREKRVVIFSAGTG------N----PFFTTDSTACLRGIEIEADVVLKATKVD 167 (247)
T ss_dssp TSE-EC--------CHHHH-----HHHHHTTCEEEEESTTS------C----SSCCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred ccc-hh--------hHHHH-----HHHHhCCCEEEEeCCcC------C----CCCCcHHHHHHHHHhCCCCEEEEEeCCC
Confidence 211 11 11222 12457899999998432 2 2356999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEeec
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRS 378 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (456)
|||++||+++|++++|++++|+|+.++ |+++|||+++.+|.++|+|++|.|+++|+ ..||+|...
T Consensus 168 Gvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~ 241 (247)
T 2a1f_A 168 GVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241 (247)
T ss_dssp SCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC
T ss_pred cccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEeec
Confidence 999999999999999999999999874 88999999999999999999999998763 578998653
No 11
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.96 E-value=1.7e-29 Score=246.65 Aligned_cols=232 Identities=17% Similarity=0.266 Sum_probs=175.1
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
++|+||||+++.+++.++++++.|... ...+++||||++|+.||.|++..... ..+
T Consensus 4 ~~ViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~--~~~-------------------- 61 (258)
T 1gs5_A 4 PLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLP--VKK-------------------- 61 (258)
T ss_dssp CEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCC--CCE--------------------
T ss_pred cEEEEEChhHhCChHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCC--cce--------------------
Confidence 589999999999999999999999753 23467999999999999998743210 000
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC-
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT- 237 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~- 237 (456)
.++++. .+....+.+ .++++.+|+.|++ .|+++|+++..+++.+.++++..+.+
T Consensus 62 --------------------~~glr~---t~~~~l~~~~~~l~~~~n~~l~~-~l~~~G~~a~~l~~~~~~~~~~~~~~~ 117 (258)
T 1gs5_A 62 --------------------KNGLRV---TPADQIDIITGALAGTANKTLLA-WAKKHQIAAVGLFLGDGDSVKVTQLDE 117 (258)
T ss_dssp --------------------ETTEEC---BCHHHHHHHHHHHHTHHHHHHHH-HHHHTTCCEEEECTTGGGCEEEEECCG
T ss_pred --------------------eCCEee---CCHHHHHHHHHHHhccchHHHHH-HHHHCCCCeEEEeecCCCEEEEEEcCC
Confidence 001110 011111111 2446789999886 57999999999999998888875322
Q ss_pred ---C-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808 238 ---N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (456)
Q Consensus 238 ---~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (456)
. .++...+...+.+ +++.+.|||++|| |.+ .+|++++++ +|++|+.+|.+|+|+ +++||||||||
T Consensus 118 d~~~~g~~~~~~~~~i~~-----ll~~g~ipVi~~~-g~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad-li~ltdV~Gv~ 186 (258)
T 1gs5_A 118 ELGHVGLAQPGSPKLINS-----LLENGYLPVVSSI-GVT-DEGQLMNVN---ADQAATALAATLGAD-LILLSDVSGIL 186 (258)
T ss_dssp GGBSBEEEEECCCHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCE-EEEEESSSSCB
T ss_pred CCCCcCceeEECHHHHHH-----HHHCCCEEEEeCC-cCC-CCCcEEEec---HHHHHHHHHHHhCCc-EEEEeCCCceE
Confidence 1 1233334444433 3578899999998 777 589998886 999999999999999 99999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCC-----CcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (456)
Q Consensus 314 taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (456)
++| +++|++++|+|+.+++..|. ++.|+.|++++++.++|++|.|+++|+ ..||+|.
T Consensus 187 ~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 187 DGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp CTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred CCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 976 57899999999999987654 667788999999999999999987763 4688875
No 12
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.96 E-value=4.6e-29 Score=241.52 Aligned_cols=214 Identities=22% Similarity=0.297 Sum_probs=160.2
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (456)
Q Consensus 80 ~~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~ 150 (456)
..++|+||||+++. |++.++++++.|.... +.++|+|+|+ |.+...+...
T Consensus 7 ~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gG-G~~~~g~~~~-------------------- 65 (240)
T 4a7w_A 7 NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGG-GNIIRGVSAA-------------------- 65 (240)
T ss_dssp CCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-TTTC--------------------------
T ss_pred CCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-cHHHhHhHHH--------------------
Confidence 36799999999998 7899999999998643 3455666665 5555322110
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (456)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i 230 (456)
.+|. ......|.+..+.+.+|+.+++.+|+++|++++.+++.+++.
T Consensus 66 ----------~~G~------------------------~~~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~~d~~~ 111 (240)
T 4a7w_A 66 ----------QGGI------------------------IRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKE 111 (240)
T ss_dssp -------------C------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred ----------hcCC------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecHHHcCc
Confidence 0110 111223444345678999999999999999999998877642
Q ss_pred EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
.+. ..+...+.+ +++.+.|||++|+.|.. .+.+|++|+++|.+|+|+++++|||||
T Consensus 112 ~~~---------~~~~~~i~~-----lL~~g~ipVi~~~~g~~----------~~~~D~~Aa~lA~~l~Ad~li~lTdVd 167 (240)
T 4a7w_A 112 ICE---------SYIYRKAIR-----HLEKGRVVIFGAGTGNP----------FFTTDTAATLRAIEIGSDLIIKATKVD 167 (240)
T ss_dssp TSE---------ECCHHHHHH-----HHHTTCEEEEESTTSCT----------TSCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred ccC---------cCcHHHHHH-----HHHCCCEEEEeCCCCCC----------CCChHHHHHHHHHHcCCCEEEEccCCC
Confidence 211 112233322 35788999999865421 134899999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC----------CCceEE
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN----------APGTLI 375 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~----------~~GT~I 375 (456)
|||++||+++|+|++|++++|+|+.++ |.++|||+|+++|.++|+|++|.|+++|+ ..||+|
T Consensus 168 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i 239 (240)
T 4a7w_A 168 GIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239 (240)
T ss_dssp SEESSCTTTCTTCCEESEECHHHHHHS---SCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred ceECCCCCCCCCCeEcceecHHHHHhc---CccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence 999999999999999999999998764 88999999999999999999999998875 357876
No 13
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.96 E-value=1e-28 Score=240.50 Aligned_cols=218 Identities=20% Similarity=0.238 Sum_probs=166.2
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (456)
Q Consensus 80 ~~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i 151 (456)
..++|+||||+++. +.+.++++++.|.... ....+|+|++.|...+.+.
T Consensus 7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~----------------------- 63 (252)
T 1z9d_A 7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP----------------------- 63 (252)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-----------------------
T ss_pred CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch-----------------------
Confidence 36799999999999 4689999999998653 2334555554466554331
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (456)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii 231 (456)
+++++.+ ++..|.+.++++.+++.++..+|.+.|+++..+++.+.+.+
T Consensus 64 -------~~~lg~~-------------------------~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~ 111 (252)
T 1z9d_A 64 -------AADAGMD-------------------------RVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNV 111 (252)
T ss_dssp -------HHHHTCC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTT
T ss_pred -------HHHcCCC-------------------------CCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccccccc
Confidence 1122322 22234556678899999999999999999999888765322
Q ss_pred eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEee-cCC
Q 012808 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DVD 310 (456)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~T-DV~ 310 (456)
++ .| ...++ ..+++.+.|||++|+.| . .++++|++|+.+|.+|+|++|+||| |||
T Consensus 112 ~~-~~--------~~~~~-----~~lL~~g~IpVi~~~~g------~----~~~~~D~~Aa~lA~~l~Ad~LiilT~DVd 167 (252)
T 1z9d_A 112 AE-PY--------IRGRA-----LRHLEKNRIVVFGAGIG------S----PYFSTDTTAALRAAEIEADAILMAKNGVD 167 (252)
T ss_dssp BE-EC--------CHHHH-----HHHHHTTCEEEEESTTS------C----TTCCHHHHHHHHHHHTTCSEEEEEESSCC
T ss_pred cC-cc--------hHHHH-----HHHHhCCCEEEEeCCcC------C----CCCChHHHHHHHHHhcCCCEEEEecCCCC
Confidence 11 11 11222 22467899999998432 1 2566999999999999999999999 999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEeecc
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRSR 379 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~~ 379 (456)
|||++||+++|++++|++++++|+.+ +|+++||++++++|.++|+|++|.|+++|+ ..||+|.++.
T Consensus 168 Gvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 242 (252)
T 1z9d_A 168 GVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV 242 (252)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred eeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence 99999999999999999999999876 588999999999999999999999998885 6799998753
No 14
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=99.96 E-value=2.1e-29 Score=251.31 Aligned_cols=239 Identities=20% Similarity=0.271 Sum_probs=181.6
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
+++|+||||+++.+++.++++++.|.... ....+|||+++|+.++.+++..
T Consensus 26 k~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~---------------------------- 77 (299)
T 2ap9_A 26 KVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRL---------------------------- 77 (299)
T ss_dssp CEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHH----------------------------
T ss_pred CeEEEEECchhhCCchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHc----------------------------
Confidence 56999999999999999999999887643 2334555555777777776521
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHH--hhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~--s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~ 237 (456)
+.+.. +.+++ +..++...+.+. +.|+ ++.. +...|++.|++++.+++.+.+++++..++
T Consensus 78 ---~~~~~-----------~~~g~---R~t~~~~l~~~~~~~~G~-l~~~-l~~~L~~~g~~av~lt~~d~~~~~~~~~~ 138 (299)
T 2ap9_A 78 ---GIEGD-----------FKGGF---RVTTPEVLDVARMVLFGQ-VGRE-LVNLINAHGPYAVGITGEDAQLFTAVRRS 138 (299)
T ss_dssp ---TCCCC-----------CSSSS---CCBCHHHHHHHHHHHHHT-HHHH-HHHHHTTSSSCEEEEETTGGGCEEEEECC
T ss_pred ---CCccc-----------ccCCc---ccCCHHHHHHHHHHHhhH-HHHH-HHHHHHhCCCCceEechhHCCEEEEEecc
Confidence 11100 11111 123455566553 3576 5666 67889999999999999998777765432
Q ss_pred -----------C-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEE
Q 012808 238 -----------N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (456)
Q Consensus 238 -----------~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i 305 (456)
. .++...+...+.+ +++.|.|||++|| +.+ ++|+.++++ +|++|+.+|.+|+|++++|
T Consensus 139 ~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVv~~v-~~~-~~G~~~~l~---~D~~Aa~lA~~l~Ad~lii 208 (299)
T 2ap9_A 139 VTVDGVATDIGLVGDVDQVNTAAMLD-----LVAAGRIPVVSTL-APD-ADGVVHNIN---ADTAAAAVAEALGAEKLLM 208 (299)
T ss_dssp BCSSSCCBCCBSEEEEEEECHHHHHH-----HHHTTCEEEEESE-EEC-TTCCEEEEC---HHHHHHHHHHHTTCSEEEE
T ss_pred cccccccCCCCcceeEEEecHHHHHH-----HHhCCCeEEECCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEE
Confidence 1 2233334443332 3578899999997 777 578888886 9999999999999999999
Q ss_pred eecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHH--HHHHHHhCCCC-EEEecCCCCC----------CCc
Q 012808 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APG 372 (456)
Q Consensus 306 ~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~G 372 (456)
||||||||++||+ ++++|++|+|+|+.+++.++...|+|+ ++..+.++|+| ++|.|+.+|+ ..|
T Consensus 209 lTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~G 285 (299)
T 2ap9_A 209 LTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTG 285 (299)
T ss_dssp EESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCS
T ss_pred EeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCc
Confidence 9999999999998 579999999999999999999999997 88899999999 9999998775 469
Q ss_pred eEEeecc
Q 012808 373 TLIRRSR 379 (456)
Q Consensus 373 T~I~~~~ 379 (456)
|+|.+..
T Consensus 286 T~i~~~~ 292 (299)
T 2ap9_A 286 TKVVRGE 292 (299)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9997653
No 15
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.96 E-value=4.3e-28 Score=235.12 Aligned_cols=215 Identities=22% Similarity=0.299 Sum_probs=163.9
Q ss_pred cceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s-------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~ 150 (456)
..++|+|+||+++.+ .+.++++++.|.... +.++++|+|+ |.+..... .
T Consensus 9 ~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gG-G~~~~~~~-~-------------------- 66 (243)
T 3ek6_A 9 YRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGG-GNIFRGAG-L-------------------- 66 (243)
T ss_dssp CSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECS-TTTSCSTT-T--------------------
T ss_pred CcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-CHHHHHHH-H--------------------
Confidence 467999999999986 579999999998643 3455666665 44332110 0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (456)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i 230 (456)
..++++ ....|++..+..++|+.++..+|++.|++++.+++.+++.
T Consensus 67 ---------~~~g~~-------------------------~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~~~~~ 112 (243)
T 3ek6_A 67 ---------AASGMD-------------------------RVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKIND 112 (243)
T ss_dssp ---------SCSSSC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBTT
T ss_pred ---------HHcCCC-------------------------CCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcCc
Confidence 012221 2223445555678999999999999999999999887654
Q ss_pred EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
++.+ + +...+. .+++.|.|||++|+.|.. ++.+|++|+++|.+|+|+.+++|||||
T Consensus 113 v~~~-~--------~~~~~~-----~lL~~g~IpVv~~~~g~~----------~~~~D~~Aa~lA~~l~Ad~li~lTdVd 168 (243)
T 3ek6_A 113 VCED-F--------IRRRAI-----RHLEKGRIAIFAAGTGNP----------FFTTDSGAALRAIEIGADLLLKATKVD 168 (243)
T ss_dssp TBEE-C--------CHHHHH-----HHHHTTCEEEEESTTSST----------TCCHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred ccCc-C--------CHHHHH-----HHHHCCcEEEEECCCCCC----------cCChHHHHHHHHHHcCCCEEEEEeCCC
Confidence 3321 1 222222 235789999999954421 255999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEee
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (456)
|||++||+++|+|++|++++|+|+.+ .|.++||++|++.|.++|+|++|.|+++|+ ..||+|.+
T Consensus 169 Gvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 169 GVYDKDPKKHSDAVRYDSLTYDEVIM---QGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp SCBSSCGGGCTTCCBCSEECHHHHHH---HTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred ccCCCCCCCCCCceecccccHHHHHh---CCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 99999999999999999999999876 378999999999999999999999998764 57999975
No 16
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=99.96 E-value=5.3e-28 Score=238.77 Aligned_cols=216 Identities=21% Similarity=0.334 Sum_probs=157.3
Q ss_pred CCcceEEEEeCccccC------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHH
Q 012808 78 EKQLTCVMKFGGSSLA------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (456)
Q Consensus 78 ~~~~~~V~KFGGsSv~------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~ 149 (456)
.+.+++|+|+||+++. +.+.++++++.|+... +.+++||+|+ |.+...+...
T Consensus 48 ~~~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~Gg-G~i~~g~~~~------------------- 107 (281)
T 3nwy_A 48 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGG-GNFFRGAQLQ------------------- 107 (281)
T ss_dssp CCCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-TTC---CCTT-------------------
T ss_pred CcCcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-hhHhhhHHHH-------------------
Confidence 3456899999999998 5789999999998653 2344555543 5444322100
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEeccccee
Q 012808 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (456)
Q Consensus 150 ~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ 229 (456)
.+++ .....|++..+++++|+.++...|+++|++++.+.+.+.+
T Consensus 108 -----------~~gl-------------------------~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~ 151 (281)
T 3nwy_A 108 -----------QLGM-------------------------ERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMG 151 (281)
T ss_dssp -----------TTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCG
T ss_pred -----------hcCC-------------------------CccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccc
Confidence 0122 1223456666788999999999999999999877766554
Q ss_pred EEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecC
Q 012808 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (456)
Q Consensus 230 iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV 309 (456)
.++ +.|. ..+... +++.|.|||++|+.|. .++++|++|+++|.+|+||.+++||||
T Consensus 152 ~~~-~~~~------------~~~~l~-lL~~g~IpVv~g~~g~----------~~~~~D~~Aa~lA~~l~Ad~LiilTDV 207 (281)
T 3nwy_A 152 QVA-EPYL------------PLRAVR-HLEKGRVVIFGAGMGL----------PYFSTDTTAAQRALEIGADVVLMAKAV 207 (281)
T ss_dssp GGS-EECC------------HHHHHH-HHHTTCEEEEESTTSS----------TTCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred ccc-cccc------------hHHHHH-HHHcCCeEEEECCCCC----------CCCCHHHHHHHHHHHcCCCEEEEeecc
Confidence 333 1121 111222 4678999999985432 135699999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (456)
Q Consensus 310 ~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (456)
||||++||+++|+|++|++++|+|+.+ .|.+++++++++.|.++|+|++|.|+++|+ ..||+|.
T Consensus 208 dGVy~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 208 DGVFAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp SSCBCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred CccccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 999999999999999999999999754 588999999999999999999999998764 5788885
No 17
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=99.95 E-value=5.2e-28 Score=247.50 Aligned_cols=227 Identities=20% Similarity=0.308 Sum_probs=139.4
Q ss_pred ceEEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHH
Q 012808 81 LTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (456)
Q Consensus 81 ~~~V~KFGGsSv~s------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~ 152 (456)
.++|+||||+++.+ .+.++++++.|.... +.++|+|+|++ +.-.+
T Consensus 5 k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGg--i~~g~------------------------- 57 (367)
T 2j5v_A 5 QTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA--IAAGR------------------------- 57 (367)
T ss_dssp CEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCH--HHHHH-------------------------
T ss_pred CEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCH--HHHHH-------------------------
Confidence 57999999999998 489999999988653 33555555643 21111
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEe
Q 012808 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (456)
Q Consensus 153 ~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit 232 (456)
..|+++. +..+....+.+.+.|+...+.++..+|+++|+++.. + +++
T Consensus 58 -------~~lg~~~--------------------~~~~l~~~qa~aavGq~~l~~~~~~~l~~~G~~~~q-----v-llt 104 (367)
T 2j5v_A 58 -------EHLGYPE--------------------LPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQ-----M-LLT 104 (367)
T ss_dssp -------HHHTSCC--------------------CCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEE-----E-EEC
T ss_pred -------HHcCCCC--------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEE-----E-EEe
Confidence 0122211 012334667778999999999999999999999853 3 555
Q ss_pred ecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceee--ccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vtt--lgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
.++|.+. ..+.+..+.+. .+++.+.|||+++ +|.+.+ +.+|++|++|+++|.+++|+.++||||||
T Consensus 105 ~~d~~~~----~r~~n~~~~i~-~LL~~g~IPIv~e-------nd~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVd 172 (367)
T 2j5v_A 105 RADMEDR----ERFLNARDTLR-ALLDNNVVPVINE-------NDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQK 172 (367)
T ss_dssp GGGGSSH----HHHHHHHHHHH-HHHHTTCEEEEEE-------CTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC-
T ss_pred cccccCc----eEEEhHHHHHH-HHHHCCCEEEECC-------CCceecccccCCCHHHHHHHHHHhcCCCEEEEeecCC
Confidence 5555432 12222223333 3567899999964 234444 77999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchH--HHHHHHHhCCCCEEEecCCCCC---------CCc
Q 012808 311 GVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------APG 372 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~--~Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~~G 372 (456)
|||++||+++|++++|+++++ +|+.+++. +|..+|+| +++.+|.++|+|++|.|+++|+ ..|
T Consensus 173 Gvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~G 252 (367)
T 2j5v_A 173 GLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVG 252 (367)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCS
T ss_pred ceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCc
Confidence 999999999999999999999 99999875 47889999 5899999999999999999886 789
Q ss_pred eEEeecc
Q 012808 373 TLIRRSR 379 (456)
Q Consensus 373 T~I~~~~ 379 (456)
|+|.+..
T Consensus 253 T~i~~~~ 259 (367)
T 2j5v_A 253 TLFHAQA 259 (367)
T ss_dssp EEECCCS
T ss_pred EEEEcCc
Confidence 9998753
No 18
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.95 E-value=2.1e-27 Score=226.19 Aligned_cols=202 Identities=21% Similarity=0.290 Sum_probs=153.6
Q ss_pred ceEEEEeCccccCC-HHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLAS-AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s-~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
+++|+||||+++.+ .+.++++++.|.... +.++|+|+|+ |..++.++...
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~i~~l~~g~~vvlV~gg-G~~~~~~~~~~--------------------------- 52 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGG-GKLAREYIKSA--------------------------- 52 (219)
T ss_dssp CEEEEEECSSTTTTCHHHHHHHHHHHHHHHHHSEEEEEECC-HHHHHHHHHHH---------------------------
T ss_pred CeEEEEeChhhhCChHHHHHHHHHHHHHHcCCCEEEEEECc-chHhcchHHHH---------------------------
Confidence 46899999999999 899999999997642 3455666665 77777654322
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~ 238 (456)
++++. ++...|.+.+.++.+++.|++.+|+.. +. +
T Consensus 53 -~~~g~-------------------------~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~-------~----------- 87 (219)
T 2ij9_A 53 -RELGA-------------------------SETFCDYIGIAATRLNAMLLISAIPSA-AK-------K----------- 87 (219)
T ss_dssp -HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHCTTB-CS-------S-----------
T ss_pred -HHcCC-------------------------CccchHHHHHHHHHHHHHHHHHHHHHh-cC-------C-----------
Confidence 22332 334556777778899999998766542 10 0
Q ss_pred cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (456)
Q Consensus 239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~ 318 (456)
...+...+. .+++.+.|||++| |. . .+++|++|+.+|.+|+|++++|||||||||++||+
T Consensus 88 ---~~~~~~~i~-----~ll~~g~ipVi~~--g~------~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~ 147 (219)
T 2ij9_A 88 ---VPVDFMEAE-----ELSKLYRVVVMGG--TF------P----GHTTDATAALLAEFIKADVFINATNVDGVYSADPK 147 (219)
T ss_dssp ---CCSSHHHHH-----HHHTTCSEEEECC--CS------S----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCS
T ss_pred ---CcCCHHHHH-----HHHHCCCEEEEeC--CC------C----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCC
Confidence 011233332 2467899999998 31 1 23599999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHc-CC-----CcchHHHHHHHHhCCCCEEEecCCCC---------CCCceEEe
Q 012808 319 IHPHAKPVPYLTFDEAAELAYF-GA-----QVLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIR 376 (456)
Q Consensus 319 ~v~~Ak~i~~ls~~Ea~eLa~~-Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~ 376 (456)
++|++++|++++|+|+.+++.. |. .++|+.|++++.+.++|++|.|+ +| +..||+|+
T Consensus 148 ~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 148 SDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp SSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred CCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 9999999999999999999765 44 78999999999999999999998 65 34688873
No 19
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.95 E-value=1.2e-27 Score=232.07 Aligned_cols=206 Identities=20% Similarity=0.253 Sum_probs=156.1
Q ss_pred cceEEEEeCccccC----CHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHH
Q 012808 80 QLTCVMKFGGSSLA----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (456)
Q Consensus 80 ~~~~V~KFGGsSv~----s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~ 155 (456)
.+++|+||||+++. +.+.++++++.|....+...+|+|++.|..++.++.
T Consensus 19 ~k~iViKlGGs~l~~~~~~~~~i~~~~~~i~~l~~g~~vViV~GgG~~~~~~~~-------------------------- 72 (244)
T 2brx_A 19 HMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIE-------------------------- 72 (244)
T ss_dssp CCEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHH--------------------------
T ss_pred ccEEEEEechhhcCCCCCCHHHHHHHHHHHHHHhCCCeEEEEECccHHHhchHH--------------------------
Confidence 36799999999999 779999999999864323345445444555554322
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC
Q 012808 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (456)
Q Consensus 156 ~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~ 235 (456)
.++.+++ +....+.+.+.|+.+++.|++.+|++.|+++ +
T Consensus 73 --~~~~~gl-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------~-------- 111 (244)
T 2brx_A 73 --VAEKFNS-------------------------SETFKDFIGIQITRANAMLLIAALREKAYPV------V-------- 111 (244)
T ss_dssp --HHHTTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGBCSS------C--------
T ss_pred --HHHHcCC-------------------------CcccHHHHHHHHHHHHHHHHHHHHHHcCCCC------C--------
Confidence 1223333 3345567777799999999998999999754 1
Q ss_pred CCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccC
Q 012808 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (456)
Q Consensus 236 ~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta 315 (456)
..+.+.+. .+++.+.|||++| |.. .+.+|++|+.+|.+|+|++++|||||||||++
T Consensus 112 -------~~~~~~i~-----~lL~~g~IpVi~g--g~~----------~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~ 167 (244)
T 2brx_A 112 -------VEDFWEAW-----KAVQLKKIPVMGG--THP----------GHTTDAVAALLAEFLKADLLVVITNVDGVYTA 167 (244)
T ss_dssp -------BCSHHHHH-----HHHHTTCBCEECC--CST----------TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSS
T ss_pred -------cCCHHHHH-----HHHhCCCEEEEcC--CCC----------CCCchHHHHHHHHHcCCCEEEEEeCCCccCCC
Confidence 01222232 2357889999998 321 22489999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHc-CC-----CcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808 316 DPNIHPHAKPVPYLTFDEAAELAYF-GA-----QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (456)
Q Consensus 316 DP~~v~~Ak~i~~ls~~Ea~eLa~~-Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (456)
||+++|++++|++++++|+.+++.. |. .++++.|++++.+.++|++|.|+++|+ ..||+|.
T Consensus 168 dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~ 243 (244)
T 2brx_A 168 DPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE 243 (244)
T ss_dssp CTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEEC
T ss_pred CCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEec
Confidence 9999999999999999999999654 44 789999999999999999999876553 4688885
No 20
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.95 E-value=1.7e-27 Score=235.11 Aligned_cols=216 Identities=22% Similarity=0.266 Sum_probs=160.0
Q ss_pred eEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 82 ~~V~KFGGsSv~s--~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
++|+||||+ +.+ .+.+.++++.|........+|+||+.|+..+.++++.
T Consensus 41 ~iVIKiGGs-l~~~~~~~l~~l~~~I~~l~~G~~vVlV~GGg~~~~~~~~~~---------------------------- 91 (276)
T 2ogx_A 41 LQVVKIGGR-VMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVG---------------------------- 91 (276)
T ss_dssp EEEEEECHH-HHTTTHHHHHHHHHHHHHHTTTCEEEEEECCTHHHHHHHHHH----------------------------
T ss_pred eEEEEEChh-hcCCCHHHHHHHHHHHHHHhCCCeEEEEECcHHHHHHHHhcc----------------------------
Confidence 799999999 888 6899999999986543334444444444433332210
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a 239 (456)
.+.+. ++...+.+...++.++..+++.++...|++++.+.
T Consensus 92 ~~~gl-------------------------~~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~~--------------- 131 (276)
T 2ogx_A 92 LDLGL-------------------------PVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHP--------------- 131 (276)
T ss_dssp HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCHH---------------
T ss_pred CcCCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc---------------
Confidence 11222 23445566666788999999888878888643111
Q ss_pred ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCce-eeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI-TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (456)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~v-ttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~ 318 (456)
...+.+. .+++.+.|||++||.+.+. ++.+ ..+.++++|++|+.+|.+|+|++++|||||||||++||+
T Consensus 132 --------~~~~~i~-~lL~~g~IpVi~~~~~~~~-~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~ 201 (276)
T 2ogx_A 132 --------TVADQLA-IHLSATRAVVGSAFPPYHH-HEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPN 201 (276)
T ss_dssp --------HHHHHHH-HHHHHSSEEEEESSCTTGG-GCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTT
T ss_pred --------ChHHHHH-HHHhCCCEEEEcCCccccc-ccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCC
Confidence 0112222 2356789999999977651 1221 233566799999999999999999999999999999999
Q ss_pred --CCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHH--hCCCCEEEecCCCC---------CCCceEEeec
Q 012808 319 --IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAR--EGDIPVRVKNSYNP---------NAPGTLIRRS 378 (456)
Q Consensus 319 --~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~--~~~Ipv~I~n~~~p---------~~~GT~I~~~ 378 (456)
.+|++++|++++++|+.+++ |..+|+|++...+. +.++|++|.|+++| +..||+|.++
T Consensus 202 ~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 202 GPDRGQARFLPETSATDLAKSE--GPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp STTGGGCCEESEEEHHHHHTSC--SCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred ccCCCCCeEcceeCHHHHHHHh--CcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 89999999999999999887 88999999998888 66889999999887 5689999764
No 21
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.95 E-value=1.2e-26 Score=226.58 Aligned_cols=214 Identities=21% Similarity=0.232 Sum_probs=151.4
Q ss_pred ceEEEEeCccccCC-------HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLAS-------AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (456)
Q Consensus 81 ~~~V~KFGGsSv~s-------~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~ 153 (456)
.++|+||||+++.+ .+.++++++.|........+|+|++.|...+.+.
T Consensus 25 k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~~g~~vVlVhGgG~~~~~~~------------------------- 79 (256)
T 2va1_A 25 QRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSI------------------------- 79 (256)
T ss_dssp SEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHTTTSEEEEEECCTTTCCHHH-------------------------
T ss_pred CEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEECCcHHhccch-------------------------
Confidence 56999999999994 5789999998876433334555554466665432
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEee
Q 012808 154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (456)
Q Consensus 154 ~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~ 233 (456)
++.++++. ...|....++..+++.++..+|++.|+++..+.+.+.
T Consensus 80 -----~~~~g~~~-------------------------~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~----- 124 (256)
T 2va1_A 80 -----AKELDMDR-------------------------NLADNMGMMATIINGLALENALNHLNVNTIVLSAIKC----- 124 (256)
T ss_dssp -----HHHTTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCC-----
T ss_pred -----HHHcCCCC-------------------------CchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeec-----
Confidence 11233322 1122334555688999989999999999988775432
Q ss_pred cCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeec-CCcc
Q 012808 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VDGV 312 (456)
Q Consensus 234 ~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TD-V~GV 312 (456)
+.+.+. . ...+ . ..+++.+.|||++|+. |. .++++|++|+.+|.+|+|++++|||| ||||
T Consensus 125 ~~~~~~--~--~~~~----~-~~lL~~g~IpVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGV 185 (256)
T 2va1_A 125 DKLVHE--S--SANN----I-KKAIEKEQVMIFVAGT------GF----PYFTTDSCAAIRAAETESSIILMGKNGVDGV 185 (256)
T ss_dssp TTTCEE--C--CHHH----H-HHHHHTTCEEEEESTT------SS----SSCCHHHHHHHHHHHHTCSEEEEEESSCCSB
T ss_pred ccccch--h--hHHH----H-HHHHhCCcEEEEECCC------CC----CCCChhHHHHHHHHhCCCCEEEEeecccCeE
Confidence 222211 1 1112 2 1246789999999832 32 35679999999999999999999999 9999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (456)
Q Consensus 313 ~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (456)
|++||+++|++++|++++++|+.++ +.++|+++++..|.++|+|++|.|+++|+ ..||+|.
T Consensus 186 y~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 186 YDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp CSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred EcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 9999999999999999999999888 56788999999999999999999998764 4688875
No 22
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=99.94 E-value=7.5e-27 Score=232.75 Aligned_cols=236 Identities=17% Similarity=0.259 Sum_probs=171.3
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
.++|+||||+++.+++.++++++.|.... ....+|||+.+|+.++.+++..
T Consensus 37 k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~---------------------------- 88 (298)
T 2rd5_A 37 KTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQL---------------------------- 88 (298)
T ss_dssp CEEEEEECTHHHHCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHT----------------------------
T ss_pred CEEEEEECchhhCChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHc----------------------------
Confidence 56999999999999999999998887542 2333445555666767665421
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC--
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-- 235 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i--~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~-- 235 (456)
+.+.. +.+|++ ..++...|.+ ++.|+. +. .+...|++.|++++.+++.+.++++..+
T Consensus 89 ---~~~~~-----------~~~g~R---~t~~~~l~~~~~~~~G~~-n~-~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~ 149 (298)
T 2rd5_A 89 ---NIPAE-----------FRDGLR---VTDATTMEIVSMVLVGKV-NK-NLVSLINAAGATAVGLSGHDGRLLTARPVP 149 (298)
T ss_dssp ---TCCCC-----------EETTEE---CBCHHHHHHHHHHHHHTH-HH-HHHHHHHHTTSCEEEEETTGGGCEEEEECT
T ss_pred ---CCCcc-----------ccCCcc---cCCHHHHHHHHHHHhchH-HH-HHHHHHHhCCCCccccChHHCCEEEEEeCC
Confidence 11110 111211 2234444443 224654 55 4677899999999999988777777653
Q ss_pred ----CCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 236 ----FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 236 ----~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
+++ .++...+...+.+ +++.|.|||++|+ +.+ ..|+.++++ +|++|+.+|.+|+|++++||||||
T Consensus 150 ~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~v-~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTdVd 219 (298)
T 2rd5_A 150 NSAQLGFVGEVARVDPSVLRP-----LVDYGYIPVIASV-AAD-DSGQAYNIN---ADTVAGELAAALGAEKLILLTDVA 219 (298)
T ss_dssp THHHHBSEEEEEEECGGGHHH-----HHHTTCEEEEESE-EEC-TTSCEEEEC---HHHHHHHHHHHHTCSEEEEEESSS
T ss_pred ccccCCcceEEEEECHHHHHH-----HHhCCCEEEEcCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCCc
Confidence 333 2333334433332 3568899999996 666 478888886 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCC-EEEecCCCCC----------CCceEE
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTLI 375 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~I 375 (456)
|||++||+ | +++|++++++|+.+++..| ...|+|+ ++..+.++|+| ++|.|+..|+ ..||+|
T Consensus 220 GVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i 296 (298)
T 2rd5_A 220 GILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMI 296 (298)
T ss_dssp SEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEE
T ss_pred CeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEE
Confidence 99999998 4 9999999999999998764 4679986 78889999999 9999987764 357887
Q ss_pred e
Q 012808 376 R 376 (456)
Q Consensus 376 ~ 376 (456)
.
T Consensus 297 ~ 297 (298)
T 2rd5_A 297 T 297 (298)
T ss_dssp E
T ss_pred e
Confidence 5
No 23
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.94 E-value=1.3e-26 Score=229.03 Aligned_cols=233 Identities=23% Similarity=0.289 Sum_probs=168.5
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
+++|+||||+++.+++.++++++.|.... ....+|+|+++|+.++.+++...
T Consensus 22 ~~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~--------------------------- 74 (282)
T 2bty_A 22 KTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLG--------------------------- 74 (282)
T ss_dssp CEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHT---------------------------
T ss_pred CeEEEEECchhhCChhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcC---------------------------
Confidence 57999999999999999999999887643 23335555557777777664211
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec---
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD--- 234 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i--~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~--- 234 (456)
.+.. +.++++ ..++...|.+ +..|+. +.. +...|++.|++++.+++.+.++++..
T Consensus 75 ----~~~~-----------~~~g~r---~t~~~~l~~~~~~~~G~~-~~~-l~~~l~~~g~~a~~l~~~~~~~l~~~~~~ 134 (282)
T 2bty_A 75 ----IEPV-----------FKNGHR---VTDEKTMEIVEMVLVGKI-NKE-IVMNLNLHGGRAVGICGKDSKLIVAEKET 134 (282)
T ss_dssp ----CCCC-----------BSSSSB---CBCHHHHHHHHHHHHHTH-HHH-HHHHHHTTTCCEEEEETTGGGSEEEEECC
T ss_pred ----CCcc-----------ccCCcc---cCCHHHHHHHHHHHhhHH-HHH-HHHHHHhCCCCceecChhhCCEEEEecCC
Confidence 1100 011111 2234444432 224665 444 67889999999999988776666654
Q ss_pred ---CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 235 ---DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 235 ---~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
++++ .++...+...+.+ +++.|.|||++|| +.+ +.|+.++++ +|++|+.+|.+|+|++++||||||
T Consensus 135 ~~~d~g~~g~v~~~~~~~i~~-----ll~~g~IpVi~~v-~~~-~~G~~~~~~---~D~~Aa~lA~~l~Ad~liilTDVd 204 (282)
T 2bty_A 135 KHGDIGYVGKVKKVNPEILHA-----LIENDYIPVIAPV-GIG-EDGHSYNIN---ADTAAAEIAKSLMAEKLILLTDVD 204 (282)
T ss_dssp TTCCCBSBEEEEEECTHHHHH-----HHHTTCEEEEESE-EEC-SSSCEEECC---HHHHHHHHHHHHTCSEEEEEESSS
T ss_pred cccCCCcceEEEEecHHHHHH-----HHHCCCEEEECCC-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCCC
Confidence 3444 2333344443332 3567999999997 766 478888886 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchH--HHHHHHHhCCCC-EEEecCCCCC----------CCceEE
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHP--QSMRPAREGDIP-VRVKNSYNPN----------APGTLI 375 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga--~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~I 375 (456)
|||++ | ++|++++++|+.+++..|. ..|.| +++..+.++|+| ++|.|+..|+ ..||+|
T Consensus 205 Gvy~~-~------~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i 277 (282)
T 2bty_A 205 GVLKD-G------KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMI 277 (282)
T ss_dssp SCEET-T------EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEE
T ss_pred CeecC-c------hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEE
Confidence 99997 3 8999999999999987654 45765 589999999998 9999987664 479999
Q ss_pred ee
Q 012808 376 RR 377 (456)
Q Consensus 376 ~~ 377 (456)
.+
T Consensus 278 ~~ 279 (282)
T 2bty_A 278 KE 279 (282)
T ss_dssp CC
T ss_pred Ee
Confidence 75
No 24
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.94 E-value=1.1e-25 Score=221.13 Aligned_cols=236 Identities=17% Similarity=0.177 Sum_probs=161.5
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
++|+||||+++. .++++++.|.... +.++|+|+|+ |...+.+++.
T Consensus 1 ~iViKlGGs~l~---~~~~~~~~i~~l~~~G~~vViVhGg-g~~~~~~~~~----------------------------- 47 (269)
T 2egx_A 1 MIVVKVGGAEGI---NYEAVAKDAASLWKEGVKLLLVHGG-SAETNKVAEA----------------------------- 47 (269)
T ss_dssp CEEEEECCSTTC---CHHHHHHHHHHHHHHTCCEEEECCC-HHHHHHHHHH-----------------------------
T ss_pred CEEEEECHHHHH---HHHHHHHHHHHHHHCCCeEEEEECC-hHHHHHHHHH-----------------------------
Confidence 479999999997 6777777776542 3455666655 4333444331
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhh--hHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF--GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~--GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~ 237 (456)
++.+.. ..++.+|+ ..+..++...+.+.+. |+. ...+...|+++|+++..+++.+.+++++...+
T Consensus 48 --~~~~~~--------~~~~~~g~-~~rvt~~~~l~~~~~~~~G~i--~~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~ 114 (269)
T 2egx_A 48 --LGHPPR--------FLTHPGGQ-VSRLTDRKTLEIFEMVYCGLV--NKRLVELLQKEGANAIGLSGLDGRLFVGRRKT 114 (269)
T ss_dssp --TTCCCC--------C--------CCCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHTTCCEEEEETTGGGCEEECBC-
T ss_pred --cCCccc--------cccccCCc-cCcCCCHHHHHHHHHHHHhHH--HHHHHHHHHHCCCCeEEeCCCCccceeeeecc
Confidence 111100 00122232 0112345666666555 544 45677889999999999999987777765432
Q ss_pred ----------------C-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCC
Q 012808 238 ----------------N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGL 300 (456)
Q Consensus 238 ----------------~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A 300 (456)
. .++...+...+. .+++.+.|||+++ ++.+ .+|+++ ++++|++|+.+|.+|+|
T Consensus 115 ~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~-----~ll~~g~ipVi~~-v~~~-~~g~~~---~~~~D~~Aa~lA~~l~A 184 (269)
T 2egx_A 115 AVKYVENGKVKVHRGDYTGTVEEVNKALLD-----LLLQAGYLPVLTP-PALS-YENEAI---NTDGDQIAALLATLYGA 184 (269)
T ss_dssp ---------------CCEECCCEECHHHHH-----HHHHTTCEEEEEC-CEEE-TTSCEE---EECHHHHHHHHHHHHTC
T ss_pred cccccccccccCCcCCCCCCceEECHHHHH-----HHHHCCCEEEEcC-cEEC-CCCCEE---EeCHHHHHHHHHHHcCC
Confidence 1 233333333333 2357899999996 7766 478876 44599999999999999
Q ss_pred ceEEEeecCCccccCCCCCCCCCccccccCHHHHH--HHHHcCCCcchHH--HHHHHHhCCC-CEEEecCCCCC------
Q 012808 301 QEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA--ELAYFGAQVLHPQ--SMRPAREGDI-PVRVKNSYNPN------ 369 (456)
Q Consensus 301 ~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~--eLa~~Ga~vlhp~--a~~~a~~~~I-pv~I~n~~~p~------ 369 (456)
++++|||||||||+ || .|++++|++++++|+. +|+.++...|+|+ ++..+.++|+ |++|.|+.+|+
T Consensus 185 d~li~lTdVdGv~~-dp--~~~a~~i~~i~~~e~~~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l 261 (269)
T 2egx_A 185 EALVYLSNVPGLLA-RY--PDEASLVREIPVERIEDPEYLALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRAL 261 (269)
T ss_dssp SEEEEEESSSSCBC---------CBCCEECHHHHHCHHHHTTSCHHHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHH
T ss_pred CEEEEEeCchhhhc-CC--CCCccccccCCHHHhhHHHhcCCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHh
Confidence 99999999999999 99 3899999999999999 9987888999985 8899999999 99999998886
Q ss_pred -CCceEEe
Q 012808 370 -APGTLIR 376 (456)
Q Consensus 370 -~~GT~I~ 376 (456)
..||+|.
T Consensus 262 ~g~GT~i~ 269 (269)
T 2egx_A 262 SGEGTVVR 269 (269)
T ss_dssp TTCSEEEC
T ss_pred CCCCeEEC
Confidence 3688873
No 25
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=99.94 E-value=1.9e-26 Score=224.13 Aligned_cols=215 Identities=18% Similarity=0.217 Sum_probs=152.3
Q ss_pred ceEEEEeCccccC-----CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLA-----SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (456)
Q Consensus 81 ~~~V~KFGGsSv~-----s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (456)
.++|+||||+++. +.+.++++++.|.... ..++|+|+|++ ....+.
T Consensus 2 k~iViKlGGs~l~~~~~~~~~~~~~~~~~i~~l~~~~~vVlVhgGg--~~~~~~-------------------------- 53 (251)
T 2ako_A 2 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSAA--ISAGHT-------------------------- 53 (251)
T ss_dssp CEEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHHHSEEEEEECCH--HHHHHH--------------------------
T ss_pred CEEEEEeCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCH--HHHHHH--------------------------
Confidence 4689999999999 8899999999987642 23444555533 222111
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (456)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~ 234 (456)
.++.+. ......+.+.+.|+....+++..+|++.|+++.. + .++.+
T Consensus 54 ------~~g~~~----------------------~~~~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~-----i-~~~~~ 99 (251)
T 2ako_A 54 ------KLDIDR----------------------KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQ-----I-LLTGK 99 (251)
T ss_dssp ------HCCCCS----------------------SSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEE-----E-EECTG
T ss_pred ------HhCCcc----------------------CCchHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE-----E-Eeccc
Confidence 122111 0112236778889999999999999999999764 2 34444
Q ss_pred CCCCcceeecchHHHHH-HHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808 235 DFTNADILEATYPAVAK-RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (456)
Q Consensus 235 ~~~~a~i~~~~~~~i~~-~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (456)
+|.+. + .++.. .....+++.+.|||++|+-+... ++. .++++|++|+.+|.+|+|++++|||||||||
T Consensus 100 ~~~~~-~-----~~~~~~~~i~~ll~~g~ipVi~~~d~v~~--~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy 168 (251)
T 2ako_A 100 DFDSR-K-----ATKHAKNAIDMMINLGILPIINENDATAI--EEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFY 168 (251)
T ss_dssp GGGCH-H-----HHHHHHHHHHHHHHTTCEEEEEECTTTCC--HHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCB
T ss_pred hhcCc-c-----eEehHHHHHHHHHHCCCEEEEeCCCceee--cce---eecCchHHHHHHHHhcCCCEEEEEeCCCcee
Confidence 43221 1 11211 22333567899999997533221 122 4678999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHH--HHHHHHH-----cCCCcchH--HHHHHHHhCCCCEEEecCCCC
Q 012808 314 TCDPNIHPHAKPVPYLTFD--EAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNP 368 (456)
Q Consensus 314 taDP~~v~~Ak~i~~ls~~--Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p 368 (456)
++||+++|++++|++++++ |+.+++. +|+..|.| +++.++.++|+|++|.|+.+|
T Consensus 169 ~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~ 232 (251)
T 2ako_A 169 DKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDL 232 (251)
T ss_dssp SSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred eCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCCh
Confidence 9999999999999999999 9999865 67776665 589999999999999998776
No 26
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.93 E-value=4.5e-26 Score=224.03 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCC--Ccee
Q 012808 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT--CAIT 280 (456)
Q Consensus 203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~--G~vt 280 (456)
.+|+. +.++|+++|++++++++.+.++++. .++...+...+.+ +++.+.|||++||++.+ .+ |+++
T Consensus 89 ~ln~~-l~~~L~~~G~~a~~l~g~~~~~~~~-----g~v~~v~~~~i~~-----lL~~g~ipVi~~~~~~~-~~~~g~~~ 156 (269)
T 3ll9_A 89 KLNSH-VCDALLAEGIPAVSMQPSAFIRAHA-----GRISHADISLIRS-----YLEEGMVPVVYGDVVLD-SDRRLKFS 156 (269)
T ss_dssp HHHHH-HHHHHHHTTCCEEECCGGGTEEEET-----TEEEEECCHHHHH-----HHHTTCEEEEECEEEEB-SCTTTSEE
T ss_pred HHHHH-HHHHHHHCCCcEEEEcchHcCeEec-----CeeeeecHHHHHH-----HHHCCCEEEECCCEEec-ccccCcce
Confidence 67776 5778999999999999999866652 3444444444433 35679999999999877 46 7788
Q ss_pred eccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHH-----cCCCcchHH--HHHHH
Q 012808 281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY-----FGAQVLHPQ--SMRPA 353 (456)
Q Consensus 281 tlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~-----~Ga~vlhp~--a~~~a 353 (456)
+++ +|++|+.+|.+|+|+++++||||||||++||+++|++++|++++++|+.++.. ++...|.|+ ++..+
T Consensus 157 ~~~---~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a 233 (269)
T 3ll9_A 157 VIS---GDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLL 233 (269)
T ss_dssp EEC---HHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHH
T ss_pred ecc---hHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHH
Confidence 886 99999999999999999999999999999999999999999999999977643 344567776 66677
Q ss_pred HhCCCCEEEecCCCCC---------CC-ceEEe
Q 012808 354 REGDIPVRVKNSYNPN---------AP-GTLIR 376 (456)
Q Consensus 354 ~~~~Ipv~I~n~~~p~---------~~-GT~I~ 376 (456)
.++|+|++|.|+..|+ .. ||+|.
T Consensus 234 ~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 234 AEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp HHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred HhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 7899999999987764 45 88886
No 27
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.93 E-value=5.4e-25 Score=216.41 Aligned_cols=216 Identities=17% Similarity=0.242 Sum_probs=150.7
Q ss_pred eEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 82 ~~V~KFGGsSv~s--~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
++|+||||+++.+ .+.++++++.|....+...+|+|++.|...+.+.+++
T Consensus 38 ~iVIKlGGs~l~~~~~~~~~~la~~I~~l~~~~~vVlVhGGg~~~~~~~~~~---------------------------- 89 (270)
T 2ogx_B 38 ATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIA---------------------------- 89 (270)
T ss_dssp EEEEEECTTTTGGGCHHHHHHHHHHHHHHTTTCEEEEEECCCHHHHHHHHHH----------------------------
T ss_pred eEEEEechHHhCCCCHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHH----------------------------
Confidence 7899999999998 5899999999986533234444444444443332211
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a 239 (456)
.+++.+.. ........+.| ++..++...|.++|++. +|..++
T Consensus 90 ~~~g~~~~-----------------------~~~~~~~~a~G--~~~l~~~~~l~~~G~~~----------vt~~d~--- 131 (270)
T 2ogx_B 90 AGLGLPAG-----------------------VLAQLGSSVAD--QNAAMLGQLLAKHGIPV----------VGGAGL--- 131 (270)
T ss_dssp HHTTCCHH-----------------------HHHHHHHHHHH--HHHHHHHHHHGGGTCCB----------CCSSTT---
T ss_pred HhcCCChH-----------------------HHHHHHHHHHH--HHHHHHHHHHHhcCCce----------ecHhhH---
Confidence 11222110 01112233434 45666777788888872 222221
Q ss_pred ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccC---CCChhHHHHHHHHcCCceEEEeecCCccccCC
Q 012808 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (456)
Q Consensus 240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgR---GGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD 316 (456)
..+. .+++.+.|||++||.|.+...+. ++.|+ +++|++|+.+|.+|+|+++++||||||||++|
T Consensus 132 -------~~i~-----~lL~~g~ipVi~g~~g~~~~~~~-~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~d 198 (270)
T 2ogx_B 132 -------SAVP-----LSLAEVNAVVFSGMPPYKLWMRP-AAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTAN 198 (270)
T ss_dssp -------CHHH-----HHCTTCCEEEEECSCTTGGGCCC-CSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSC
T ss_pred -------HHHH-----HHHhCCCEEEEeCCccccccccc-cccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCC
Confidence 1122 23678999999999876521222 23333 78999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHh--CCCCEEEecCCCCC---------CCceEEee
Q 012808 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPARE--GDIPVRVKNSYNPN---------APGTLIRR 377 (456)
Q Consensus 317 P~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~--~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (456)
|+.+|++++|++++++|+.+++..| +++++.....++. .++|++|.|+.+|+ ..||+|.+
T Consensus 199 P~~~~~a~~i~~i~~~e~~~~~~~g-~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 199 PKTSKDATFIPRISVDEMKAKGLHD-SILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp SSSCTTCCEESEEEHHHHHHTTCCC-TTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred CCCCCCCeEcceeCHHHHHHHhcCC-CcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 9999999999999999999998655 6788877666665 57899999998875 67999964
No 28
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=99.93 E-value=3.1e-26 Score=227.14 Aligned_cols=222 Identities=13% Similarity=0.086 Sum_probs=154.4
Q ss_pred ceEEEEeCccccCCHH--------HHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808 81 LTCVMKFGGSSLASAE--------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~--------~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~ 150 (456)
.++|+||||+++.+++ .++++++.|.... +.+++||||++|+..+.+++...
T Consensus 24 ~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~~~~------------------ 85 (286)
T 3d40_A 24 DFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHD------------------ 85 (286)
T ss_dssp SEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC---------------------------
T ss_pred CEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHcC------------------
Confidence 4799999999999864 8999998887653 22257777999998887654211
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (456)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i 230 (456)
.+. ++. +...+.|+-.....+..+|+++|+++..+.+.+.++
T Consensus 86 -------------~~~---------------------~~~----~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~ 127 (286)
T 3d40_A 86 -------------STH---------------------AFS----LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCT 127 (286)
T ss_dssp -------------------------------------CCT----THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEE
T ss_pred -------------CCc---------------------ccc----hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCc
Confidence 000 011 112333333344567888999999999998877654
Q ss_pred EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHH-cCCceEEEeecC
Q 012808 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA-LGLQEIQVWKDV 309 (456)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~-L~A~~l~i~TDV 309 (456)
|.+ + +.......+.+ +++.+.|||++||++.+ .+|++ .++++|++|+.+|.+ |+|++|+|||||
T Consensus 128 -t~d--g---~~~~~~~~i~~-----lL~~g~IpVi~gd~~~~-~~g~~---~~~~~D~~Aa~lA~~~l~Ad~LiilTDV 192 (286)
T 3d40_A 128 -LRN--G---IPQLRSEVLRD-----VLDHGALPVLAGDALFD-EHGKL---WAFSSDRVPEVLLPMVEGRLRVVTLTDV 192 (286)
T ss_dssp -EET--T---EEEECCSHHHH-----HHHTTCEEEEECEEEEB-TTSCE---EEECGGGHHHHTTTTCCSCEEEEEEESS
T ss_pred -ccC--C---eEEehHHHHHH-----HHHCcCEEEEcCCeEEc-CCCCE---EeeCHHHHHHHHHHhhCCCCEEEEecCC
Confidence 443 2 22222223332 35788999999988877 46764 456699999999999 999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHH--------cCCCcchH--HHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVLHP--QSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (456)
Q Consensus 310 ~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~--------~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (456)
||||++||+ ++++|++|+++|+.++.. ++..+|+| +++..+.++|+|++|.|+.+|+....+++
T Consensus 193 dGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t 266 (286)
T 3d40_A 193 DGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTA 266 (286)
T ss_dssp SSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGS
T ss_pred CeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhc
Confidence 999999999 899999999988766632 36689998 58999999999999999988865444443
No 29
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=99.93 E-value=1.5e-25 Score=225.65 Aligned_cols=237 Identities=19% Similarity=0.291 Sum_probs=171.7
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
+++|+||||+++.+++.++++++.|.... +.++|+|+|+ |...+.+++.
T Consensus 50 k~iVIKlGGs~l~~~~~~~~l~~~i~~l~~~G~~vVlVhGg-G~~i~~~~~~---------------------------- 100 (321)
T 2v5h_A 50 RTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGG-GPEINAWLGR---------------------------- 100 (321)
T ss_dssp CEEEEEECTHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHHH----------------------------
T ss_pred CeEEEEECchhhCCchHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHH----------------------------
Confidence 56999999999999988899988887542 3355555554 6555554431
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec--
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i--~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~-- 234 (456)
++++.. +.+|++ ..++...|.+ ++.|+. +.. +...|+..|++++.+++.+.++++..
T Consensus 101 ---~g~~~~-----------~~~g~R---vt~~~~l~~~~~~~~G~i-n~~-l~~~L~~~g~~a~gl~~~~a~~l~a~~~ 161 (321)
T 2v5h_A 101 ---VGIEPQ-----------FHNGLR---VTDADTMEVVEMVLVGRV-NKD-IVSRINTTGGRAVGFCGTDGRLVLARPH 161 (321)
T ss_dssp ---TTCCCC-----------BSSSSB---CBCHHHHHHHHHHHHHTH-HHH-HHHHHHHHTCCEEEECTTGGGSEEEEEC
T ss_pred ---cCCCcc-----------ccCCcc---cCCHHHHHHHHHHHhChH-HHH-HHHHHHhCCCCeeeeChhhccEEEeecC
Confidence 121110 111211 1234555555 234644 654 66789999999999988776666654
Q ss_pred ---CCCCc-ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 235 ---DFTNA-DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 235 ---~~~~a-~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
++++. ++...+...+.+ +++.|.|||+++ ++.+ ..|+...++ +|++|+.+|.+|+|++++|+||||
T Consensus 162 ~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTDVd 231 (321)
T 2v5h_A 162 DQEGIGFVGEVNSVNSEVIEP-----LLERGYIPVISS-VAAD-ENGQSFNIN---ADTVAGEIAAALNAEKLILLTDTR 231 (321)
T ss_dssp SSCSSBSBEEEEEECGGGTHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCccccccceeEEecHHHHHH-----HHHCCCeEEEeC-ceEC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEEeeCCC
Confidence 55543 333334433332 357899999995 5666 477765554 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCC-EEEecCCCCC----------CCceEE
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTLI 375 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~I 375 (456)
|||++||+ ++++|++|+++|+.+++..| +.+|+|+ ++..+.++|+| ++|.|+..|+ ..||+|
T Consensus 232 GVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I 308 (321)
T 2v5h_A 232 GILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMI 308 (321)
T ss_dssp SCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEE
T ss_pred ceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEE
Confidence 99999998 68999999999999998764 6789985 88999999999 9999986654 579999
Q ss_pred eec
Q 012808 376 RRS 378 (456)
Q Consensus 376 ~~~ 378 (456)
.+.
T Consensus 309 ~~~ 311 (321)
T 2v5h_A 309 VGS 311 (321)
T ss_dssp ECC
T ss_pred ECC
Confidence 864
No 30
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.92 E-value=2e-24 Score=215.47 Aligned_cols=234 Identities=21% Similarity=0.322 Sum_probs=169.1
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
.++|+||||+++.+++.+..+++.|.... +.++|+|+|+ |...+.+++.
T Consensus 27 k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGg-G~~i~~~~~~---------------------------- 77 (300)
T 2buf_A 27 KTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGG-GPQIGDLLKR---------------------------- 77 (300)
T ss_dssp CEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHHHHH----------------------------
T ss_pred CeEEEEECchhhCCchHHHHHHHHHHHHHHCCCeEEEEECC-cHHHHHHHHH----------------------------
Confidence 57999999999999988999988887542 3455556654 6665555431
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec--
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i--~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~-- 234 (456)
++++.. +.+|++ ..++...|.+ ++.|+. ...+...|+..|++++.+++.+.++++..
T Consensus 78 ---~g~~~~-----------~~~g~r---vt~~~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~ 138 (300)
T 2buf_A 78 ---LSIESH-----------FIDGMR---VTDAATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKL 138 (300)
T ss_dssp ---TTCCCC-----------BSSSSB---CBCHHHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEEC
T ss_pred ---cCCCcc-----------ccCCee---cCCHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeeec
Confidence 111110 111211 1234555555 334665 55677889999999999988776676654
Q ss_pred ---------------CCCCc-ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHc
Q 012808 235 ---------------DFTNA-DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKAL 298 (456)
Q Consensus 235 ---------------~~~~a-~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L 298 (456)
++++. ++...+...+. .+++.|.|||+++ ++.+ +.|+..+++ +|++|+.+|.+|
T Consensus 139 ~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~-----~lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~l 208 (300)
T 2buf_A 139 TVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLN-----MLVKGDFIPVIAP-IGVG-SNGESYNIN---ADLVAGKVAEAL 208 (300)
T ss_dssp CCCCC--------CCCCBSBEEEEEECHHHHH-----HHHHTTCEEEEEE-EEEC-TTSCEEECC---HHHHHHHHHHHH
T ss_pred cccccchhhcccccccCCcceeEEEECHHHHH-----HHHHCCCEEEEcC-ceeC-CCCCEEEEC---HHHHHHHHHHHc
Confidence 23332 22233433332 2457899999995 4666 478887776 999999999999
Q ss_pred CCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--HHHHHHHhCCCC-EEEecCCCCC----
Q 012808 299 GLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPN---- 369 (456)
Q Consensus 299 ~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~---- 369 (456)
+|++++|||||||||++ ++++|++++++|+.+++..| ..+|+| +++..+.++|+| ++|.|+..|+
T Consensus 209 ~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~ 282 (300)
T 2buf_A 209 KAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLL 282 (300)
T ss_dssp TCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHH
T ss_pred CCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHH
Confidence 99999999999999997 48899999999999998765 578999 588899999999 9999987664
Q ss_pred ------CCceEEeec
Q 012808 370 ------APGTLIRRS 378 (456)
Q Consensus 370 ------~~GT~I~~~ 378 (456)
..||+|.+.
T Consensus 283 ~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 283 EIFTDSGVGTLISNR 297 (300)
T ss_dssp HHSSTTCCSEEEECC
T ss_pred HHhcCCCCceEEEeC
Confidence 579999753
No 31
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.92 E-value=9.1e-25 Score=215.54 Aligned_cols=227 Identities=17% Similarity=0.230 Sum_probs=164.2
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (456)
.++|+||||+++.+. ++++++.|... .+.++|+|+|++..++..|.+++
T Consensus 37 k~iVIKiGGs~l~~~--~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg--------------------------- 87 (279)
T 3l86_A 37 DIIVIKIGGVASQQL--SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQ--------------------------- 87 (279)
T ss_dssp CEEEEEECTTGGGSC--CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTT---------------------------
T ss_pred ceEEEEEChHHHHhH--HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcC---------------------------
Confidence 478999999999873 56666666543 24466777776445555544332
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHH--hhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC
Q 012808 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (456)
Q Consensus 159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~--s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~ 236 (456)
++.. +.+|++++ +++..+.+- ..| .++.. +.+.|++.|+++..+++.+.+++|.+++
T Consensus 88 -----~~~~-----------~~~G~Rvt---d~~~l~~v~~~l~G-~ln~~-i~~~L~~~G~~a~~l~g~dg~llta~~~ 146 (279)
T 3l86_A 88 -----VPVK-----------KINGLRVT---SKDDMVLVSHALLD-LVGKN-LQEKLRQAGVSCQQLKSDIKHVVAADYL 146 (279)
T ss_dssp -----CCCC-----------EETTEECB---CHHHHHHHHHHHHH-TTHHH-HHHHHHHTTCCEEECSGGGGGTEEEEES
T ss_pred -----CCCc-----------cCCCcccC---cHHHHHHHHHHHHH-HHHHH-HHHHHHhCCCCEEEEecCcCCEEEeecc
Confidence 2111 11222221 233333331 113 23343 6678999999999999999889998743
Q ss_pred -----CC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 237 -----TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 237 -----~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
++ .++...+...+.+ +++.|.|||++| ++.+ ++|+.++++ +|++|+.+|.+|+|++++||||||
T Consensus 147 ~~~d~g~vG~i~~v~~~~i~~-----lL~~g~IPVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTDVd 216 (279)
T 3l86_A 147 DKDTYGYVGDVTHINKRVIEE-----FLENRQIPILAS-LGYS-KEGDMLNIN---ADYLATAVAVALAADKLILMTNVK 216 (279)
T ss_dssp CHHHHBSBEEEEEECHHHHHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CccccCcccccchhhHHHHHH-----HHhCCcEEEECC-cEEC-CCCCEeecC---HHHHHHHHHHHcCCCEEEEEeCCC
Confidence 44 3555555544443 357899999999 8877 478888886 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--HHHHHHHhCCCC-EEEecCCCCCCCceEEee
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPNAPGTLIRR 377 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~~~GT~I~~ 377 (456)
|||+ ++++|++++++|+.+++..| ...|.| +++..|.++|+| ++|.|++.+ ||+|..
T Consensus 217 GV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~~---GT~i~~ 278 (279)
T 3l86_A 217 GVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNLLT---GTLITA 278 (279)
T ss_dssp SCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEESSSSC---SEEEEC
T ss_pred cccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEeccCCC---CeEEec
Confidence 9994 47899999999999998754 467888 588999999998 999999985 999975
No 32
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.91 E-value=1.9e-24 Score=216.98 Aligned_cols=237 Identities=16% Similarity=0.140 Sum_probs=159.3
Q ss_pred ceEEEEeCccccC--CH--------HHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHH
Q 012808 81 LTCVMKFGGSSLA--SA--------ERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (456)
Q Consensus 81 ~~~V~KFGGsSv~--s~--------~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l 148 (456)
.++|+||||+++. ++ +.++++++.|.... +.++|+|+|++..+++.|.+.....
T Consensus 3 k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~-------------- 68 (314)
T 1e19_A 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQ-------------- 68 (314)
T ss_dssp CEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH--------------
T ss_pred CEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcc--------------
Confidence 4789999999999 54 58888888887542 4467778877777887776643210
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHH--hhhH---HHHHHHHHHHHHHcCCce---
Q 012808 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGE---CMSTRIFAAYLNKIGVKA--- 220 (456)
Q Consensus 149 ~~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~--s~GE---~lsa~lla~~L~~~Gi~a--- 220 (456)
.+ + . + +++..+.+. ..|+ .+ ..++...|++.|+++
T Consensus 69 -----~~----~--~----------------------~---~~~~l~~~~a~~~G~i~~~l-~~~l~~~l~~~gi~a~~~ 111 (314)
T 1e19_A 69 -----AT----Y--G----------------------I---PAQPMDVAGAMSQGWIGYMI-QQALKNELRKRGMEKKVV 111 (314)
T ss_dssp -----HH----H--C----------------------C---CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCCCCEE
T ss_pred -----cc----C--C----------------------C---ChhHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCCchhhh
Confidence 00 0 0 0 111122232 1233 55 556778899999987
Q ss_pred -----EEecccce----------eEEeec-------CC------------CCcc-----eeecchHHHHHHHhhccccCC
Q 012808 221 -----RQYDAFDI----------GFITTD-------DF------------TNAD-----ILEATYPAVAKRLHGDWITDL 261 (456)
Q Consensus 221 -----~~ld~~~~----------~iit~~-------~~------------~~a~-----i~~~~~~~i~~~l~~~ll~~~ 261 (456)
+.+++.+. ++++.+ ++ .++. +...+...+ ..+++.|
T Consensus 112 ~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~~~~~v~s~~~i~~v~~~~i-----~~lL~~g 186 (314)
T 1e19_A 112 TIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETI-----KKLVERG 186 (314)
T ss_dssp EBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETTHHHH-----HHHHHTT
T ss_pred hhheeeeecccchhhccccccccceecHHHhhhhhhhcCccccccccccccccccCcccceeehHHHH-----HHHHHCC
Confidence 55565552 233210 01 1110 111222222 2346789
Q ss_pred ceEEEcCCCcCCC-CCCceeeccC---CCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHH
Q 012808 262 AIPIVTGFLGKAW-RTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAEL 337 (456)
Q Consensus 262 ~VpVv~Gfig~~~-~~G~vttlgR---GGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eL 337 (456)
.|||++||.|... .+.+. ++|+ +++|++|+.+|.+|+|++++|||||||||++|| .|++++|++++++|+.++
T Consensus 187 ~IpV~~Gg~giPi~~~~d~-~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a~~i~~i~~~e~~~~ 263 (314)
T 1e19_A 187 VIVIASGGGGVPVILEDGE-IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEELRKY 263 (314)
T ss_dssp CEEECSGGGCEEEEEETTE-EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECCEEEHHHHHHH
T ss_pred CEEEEeCCCccCeEECCCC-cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCCeECCEECHHHHHHH
Confidence 9999998755421 01122 4564 889999999999999999999999999999999 489999999999999999
Q ss_pred HHcCC---CcchHH---HHHHHHhCCCCEEEec------CCCCCCCceEEee
Q 012808 338 AYFGA---QVLHPQ---SMRPAREGDIPVRVKN------SYNPNAPGTLIRR 377 (456)
Q Consensus 338 a~~Ga---~vlhp~---a~~~a~~~~Ipv~I~n------~~~p~~~GT~I~~ 377 (456)
+..|. ..|+|| |++.+++.++|++|.| .++. ..||+|.+
T Consensus 264 ~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 264 YEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp HHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred HhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEEcC
Confidence 87653 679998 6677888999999987 2333 47999863
No 33
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.90 E-value=3e-23 Score=201.68 Aligned_cols=223 Identities=16% Similarity=0.190 Sum_probs=148.7
Q ss_pred cceEEEEeCccccCCH--------HHHHHHHHHHHcCCCCCcE-EEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808 80 QLTCVMKFGGSSLASA--------ERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s~--------~~~~~va~iI~~~~~~~~v-vVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~ 150 (456)
..++|+||||+++.++ +.++++++.|.. +.++| +|+++ |...+.+++
T Consensus 3 ~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~--G~~vv~lVhGG-G~~~~~~~~--------------------- 58 (249)
T 3ll5_A 3 FTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG--IEDLVCVVHGG-GSFGHIKAM--------------------- 58 (249)
T ss_dssp -CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT--CTTEEEEEECC-GGGTHHHHH---------------------
T ss_pred ceEEEEEECccEEecCcccccchHHHHHHHHHHHhc--CCceEEEEECc-cHHHHHHHH---------------------
Confidence 3578999999999986 489999999986 55666 67766 666655332
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (456)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i 230 (456)
++++++..... + -.++ +..+..+ + .+|+.++ ++|+++|+++.++++.++++
T Consensus 59 ----------~~gi~~~~~~~--d-----~~gl--------~~t~~~~--~-~ln~~~v-~~l~~~G~~a~~l~~~~~~~ 109 (249)
T 3ll5_A 59 ----------EFGLPGPKNPR--S-----SIGY--------SIVHRDM--E-NLDLMVI-DAMIEMGMRPISVPISALRY 109 (249)
T ss_dssp ----------HHTCSEECCHH--H-----HHHH--------HHHHHHH--H-HHHHHHH-HHHHHTTCCEEECCGGGSCB
T ss_pred ----------HhCCCcCCCcc--c-----cccH--------HHHHHHH--H-HHHHHHH-HHHHHCCCcEEEEcHHHccc
Confidence 11222110000 0 0011 1111122 2 7888887 77999999999999888643
Q ss_pred EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
..++ +...+.. +++.|.|||++|+++.+ .+|..++++ +|++|+.+|.+|+|+++++|||||
T Consensus 110 -------~g~v---~~~~i~~-----ll~~g~ipVi~~~~~~~-~~~~~~~~~---~D~~Aa~lA~~l~Ad~li~ltdvd 170 (249)
T 3ll5_A 110 -------DGRF---DYTPLIR-----YIDAGFVPVSYGDVYIK-DEHSYGIYS---GDDIMADMAELLKPDVAVFLTDVD 170 (249)
T ss_dssp -------SSSB---CCHHHHH-----HHHTTCEEEEECEEEEE-ETTEEEEEC---HHHHHHHHHHHHCCSEEEEEESSS
T ss_pred -------ccEE---cHHHHHH-----HHHCCCEEEECCCEEEc-CCCceeeec---HHHHHHHHHHhcCCCEEEEEeCCC
Confidence 1233 2222322 35789999999988765 356655444 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHH--HcCCCcchHH--HHHHH-HhCCCCEEEecCCCCC--------CC-ceEE
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDEAAELA--YFGAQVLHPQ--SMRPA-REGDIPVRVKNSYNPN--------AP-GTLI 375 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa--~~Ga~vlhp~--a~~~a-~~~~Ipv~I~n~~~p~--------~~-GT~I 375 (456)
|||++||+++|++++++++. +++..+. .++...|.|+ ++..+ .++|++++|.|+.+|+ .. ||+|
T Consensus 171 Gv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~~~l~~l~g~~~~GT~i 248 (249)
T 3ll5_A 171 GIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVI 248 (249)
T ss_dssp SCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHHHTTCTTCEEEEETTSGGGGGGTTSTTCCSEEE
T ss_pred ccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCChhHHHHhCCCCCCCEEe
Confidence 99999999999999999995 2222222 2345678886 45555 8899999999976653 34 7776
No 34
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.86 E-value=1.2e-21 Score=195.55 Aligned_cols=232 Identities=19% Similarity=0.346 Sum_probs=163.5
Q ss_pred CcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHH
Q 012808 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (456)
Q Consensus 79 ~~~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 156 (456)
++.++|+||||+.+.+ .++++++.|... .+.++|+|+++ |+..+.+++
T Consensus 47 ~~~~iViK~GGsv~~~--~~~~~~~dI~~l~~~G~~~VvVHGg-G~~i~~~l~--------------------------- 96 (307)
T 3zzh_A 47 QQQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPIVLHGT-GPQVNGRLE--------------------------- 96 (307)
T ss_dssp CSCCEEEEECHHHHHH--SHHHHHHHHHHHHHBTCCEEEEECC-HHHHHHHHH---------------------------
T ss_pred CCCEEEEEEChHHhhc--hHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHH---------------------------
Confidence 4568999999986653 478888887753 24566666654 555555543
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec-
Q 012808 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (456)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~- 234 (456)
+++++++ +.+|++++ +++..+.+ ..+| .+|..| .+.|++.|++|+++++ ++++.+
T Consensus 97 ----~~gi~~~-----------~~~G~RvT---d~~~l~vv~m~~~-~vn~~l-v~~L~~~G~~Av~l~g---g~~~a~~ 153 (307)
T 3zzh_A 97 ----AQGIEPD-----------YIDGIRIT---DEHTMAVVRKCFL-EQNLKL-VTALEQLGVRARPITS---GVFTADY 153 (307)
T ss_dssp ----HTTCCCC-----------EETTEECB---CHHHHHHHHHHHH-HHHHHH-HHHHHHTTCCEEEECS---SSEEEEE
T ss_pred ----HcCCCcc-----------ccCCeecC---CHHHHHHHHHHHH-HHHHHH-HHHHHhCCCCeeEEcC---CcEEEEe
Confidence 2233221 33454433 45666766 4567 578776 4679999999999987 345554
Q ss_pred ----CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecC
Q 012808 235 ----DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (456)
Q Consensus 235 ----~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV 309 (456)
+|+. +++...+...+... ++.|.|||++|+ |.+ .+|++++++ +|++|+.+|.+|+|++++|+|||
T Consensus 154 ~~~~d~g~~G~i~~v~~~~i~~l-----L~~g~IpVi~~~-g~~-~~G~~~~i~---~D~~A~~lA~~L~Ad~Li~lTdV 223 (307)
T 3zzh_A 154 LDKDKYKLVGNIKSVTKEPIEAS-----IKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEK 223 (307)
T ss_dssp SCHHHHBSBEEEEEECCHHHHHH-----HHHTCEEEECCC-EEC-TTCBEEBCC---HHHHHHHHHHHHCCSEEEEECSS
T ss_pred cCccccCccccccccCHHHHHHH-----HHCCCEEEEeCC-eEC-CCCcEEecC---HHHHHHHHHHhCCCCEEEEEeCC
Confidence 3442 46666666555543 467899999996 766 478888887 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHH-HHHHHHcC--CCcchHH--HHHHHHhC---CCCEEEecC-------CCCCCCceE
Q 012808 310 DGVLTCDPNIHPHAKPVPYLTFDE-AAELAYFG--AQVLHPQ--SMRPAREG---DIPVRVKNS-------YNPNAPGTL 374 (456)
Q Consensus 310 ~GV~taDP~~v~~Ak~i~~ls~~E-a~eLa~~G--a~vlhp~--a~~~a~~~---~Ipv~I~n~-------~~p~~~GT~ 374 (456)
||||++ |++++|++++++| +.++...| ...|.|+ +++-|.+. +.++.|.+. |..+..||+
T Consensus 224 ~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~~~~ll~elft~~g~GT~ 298 (307)
T 3zzh_A 224 GGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTM 298 (307)
T ss_dssp CSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCTTCCEEEECGGGHHHHHHSCCCCSEE
T ss_pred cceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhccCeEEEEeCccHHHHHHhcCCCCcEE
Confidence 999986 5789999999976 56776543 3577887 33444443 789999873 223567999
Q ss_pred Eeec
Q 012808 375 IRRS 378 (456)
Q Consensus 375 I~~~ 378 (456)
|.+.
T Consensus 299 I~~~ 302 (307)
T 3zzh_A 299 IRRG 302 (307)
T ss_dssp EECC
T ss_pred EecC
Confidence 9864
No 35
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.85 E-value=5.1e-21 Score=200.80 Aligned_cols=233 Identities=18% Similarity=0.141 Sum_probs=162.7
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (456)
Q Consensus 81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (456)
.++|+||||+++.+++ +.++++.|.... .+..+|+|+++|..++.+++..
T Consensus 44 ~~iViK~GG~~l~~~~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~---------------------------- 94 (456)
T 3d2m_A 44 TTLVAGIDGRLLEGGT-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQ---------------------------- 94 (456)
T ss_dssp CEEEEEECGGGGTSTH-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTT----------------------------
T ss_pred CEEEEEEChHHhcCch-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHC----------------------------
Confidence 4699999999999876 788888877542 2334556666776666554311
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCce----EEecccceeEEeec
Q 012808 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKA----RQYDAFDIGFITTD 234 (456)
Q Consensus 160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a----~~ld~~~~~iit~~ 234 (456)
+.... +.+|++ -.++...+.+ .+.| .++..+ .+.|+ .|+++ +.+++.+.++++..
T Consensus 95 ---~~~~~-----------~~~g~r---~t~~~~l~~~~~~~G-~~~~~l-~~~l~-~g~~~~~~~~~l~~~~~~~~~~~ 154 (456)
T 3d2m_A 95 ---GRTPH-----------YCRGLR---VTDETSLGQAQQFAG-TVRSRF-EAALC-GSVSGFARAPSVPLVSGNFLTAR 154 (456)
T ss_dssp ---TCCCC-----------CGGGCC---CBCHHHHHHHHHHHH-HHHHHH-HHHHH-TC--------CCCEECCSCEEEE
T ss_pred ---CCCCE-----------eeCCee---cCCHHHHHHHHHHHh-HHHHHH-HHHHh-cccccCCCccceeeccCcEEEEE
Confidence 11110 112222 1234555555 3346 556665 45677 99988 88888777777765
Q ss_pred CC--------CC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEE
Q 012808 235 DF--------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (456)
Q Consensus 235 ~~--------~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i 305 (456)
.. +. .++...+...+.+ +++.|.|||++++ +.+ .+|+..+++ +|++|+.+|.+|+|+.++|
T Consensus 155 ~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~ipIi~~~-~~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad~li~ 224 (456)
T 3d2m_A 155 PIGVIDGTDMEYAGVIRKTDTAALRF-----QLDAGNIVWMPPL-GHS-YGGKTFNLD---MVQAAASVAVSLQAEKLVY 224 (456)
T ss_dssp ECCEETTEECBTBEEEEEECHHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCSEEEE
T ss_pred EcccccCcccCceeeEEEECHHHHHH-----HHHCCCeEEECCc-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEE
Confidence 43 22 2333344433332 4678999999985 555 478888886 9999999999999999999
Q ss_pred eecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchH--HHHHHHHhCCCC-EEEecCCCC----------CCCc
Q 012808 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHP--QSMRPAREGDIP-VRVKNSYNP----------NAPG 372 (456)
Q Consensus 306 ~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp--~a~~~a~~~~Ip-v~I~n~~~p----------~~~G 372 (456)
+|||||||++ ++++|++++++|+.+++..|...|.| +++..+.++|++ ++|.|+..| +..|
T Consensus 225 lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~G 298 (456)
T 3d2m_A 225 LTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIG 298 (456)
T ss_dssp EESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSS
T ss_pred EECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCc
Confidence 9999999986 58899999999999998888788999 488889999996 999987554 3579
Q ss_pred eEEeec
Q 012808 373 TLIRRS 378 (456)
Q Consensus 373 T~I~~~ 378 (456)
|+|.++
T Consensus 299 T~i~~~ 304 (456)
T 3d2m_A 299 TSIAKE 304 (456)
T ss_dssp EEEECC
T ss_pred eeeecc
Confidence 999764
No 36
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.84 E-value=5.9e-21 Score=191.68 Aligned_cols=234 Identities=14% Similarity=0.139 Sum_probs=153.8
Q ss_pred ceEEEEeCccccC--CH--------HHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHH
Q 012808 81 LTCVMKFGGSSLA--SA--------ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (456)
Q Consensus 81 ~~~V~KFGGsSv~--s~--------~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~ 149 (456)
+++|+||||+++. +. +.++++++.|.... ....+|+||++|...+.+++...
T Consensus 5 ~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~----------------- 67 (316)
T 2e9y_A 5 RLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFE----------------- 67 (316)
T ss_dssp CEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHH-----------------
T ss_pred CEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcC-----------------
Confidence 5799999999999 64 68888998887643 23457777888887776554211
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-----HhhhHHHHHHHHHHHHHHcCCce----
Q 012808 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-----VSFGECMSTRIFAAYLNKIGVKA---- 220 (456)
Q Consensus 150 ~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-----~s~GE~lsa~lla~~L~~~Gi~a---- 220 (456)
.... ..++...|.+ ...|..++ ..+...|.+.|+++
T Consensus 68 --------------~~~~--------------------~t~~~~l~~~~~~~~G~i~~~l~-~~l~~~l~~~g~~a~~~~ 112 (316)
T 2e9y_A 68 --------------ALPP--------------------ERPRQPLYIATAMTQAWIGLLLK-HSLEEELRRRGLNVLVPV 112 (316)
T ss_dssp --------------TSCT--------------------TSCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCCCCCCE
T ss_pred --------------CCCC--------------------CCCHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhcCCCccccc
Confidence 0000 0011222222 23343466 46778899999997
Q ss_pred ----EEecccce----------eEEee---c----CCC-----C-----cc-------eeecchHHHHHHHhhccccCCc
Q 012808 221 ----RQYDAFDI----------GFITT---D----DFT-----N-----AD-------ILEATYPAVAKRLHGDWITDLA 262 (456)
Q Consensus 221 ----~~ld~~~~----------~iit~---~----~~~-----~-----a~-------i~~~~~~~i~~~l~~~ll~~~~ 262 (456)
+.+++.+. ++++. + +++ + -+ +...+...+. .+++.|.
T Consensus 113 v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r~vv~sp~~i~~v~~~~i~-----~lL~~g~ 187 (316)
T 2e9y_A 113 VISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIA-----EASAESP 187 (316)
T ss_dssp ECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEEEEECCCCEEEETTHHHHH-----HHHHHCS
T ss_pred eeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccceecccCCCcceeehHHHHH-----HHHHCCC
Confidence 67777663 12210 0 011 1 00 1112333232 2456789
Q ss_pred eEEEcCCCcCC---CCCCce----eeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHH
Q 012808 263 IPIVTGFLGKA---WRTCAI----TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA 335 (456)
Q Consensus 263 VpVv~Gfig~~---~~~G~v----ttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~ 335 (456)
|||++|+.|.. .++|.. .++ ++|++|+.+|.+|+||.|+|+|||||||+ ||+ .|++++|++++++|+.
T Consensus 188 IpI~~g~~g~pv~~~~~g~~~g~~~~i---d~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~a~~i~~i~~~e~~ 262 (316)
T 2e9y_A 188 AVVALGGGGVPVVERPGGVLEPVEAVV---DKDLASSLLATQLNADLLVILTDVPGVAV-NYG-REGERWLRRAAASELK 262 (316)
T ss_dssp EEEECGGGCEEEEECTTSCEEECSCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STTCEECSEEEHHHHH
T ss_pred EEEEECCCCCCeeECCCCCeecceeee---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCCCcCCcEEcHHHHH
Confidence 99999865432 134522 222 59999999999999999999999999999 895 7999999999999999
Q ss_pred HHHHcC---CCcchHH--HHHHHHhCCC-CEEEecC------CCCCCCceEEee
Q 012808 336 ELAYFG---AQVLHPQ--SMRPAREGDI-PVRVKNS------YNPNAPGTLIRR 377 (456)
Q Consensus 336 eLa~~G---a~vlhp~--a~~~a~~~~I-pv~I~n~------~~p~~~GT~I~~ 377 (456)
+++..| ...|.|+ ++..+.++++ +++|.|. +.. ..||+|.+
T Consensus 263 ~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 263 KYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp HHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEEEC
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEEec
Confidence 998743 3557776 6667778899 8999762 122 46899864
No 37
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.83 E-value=4e-20 Score=185.16 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=90.3
Q ss_pred cccCCceEEEcCCCcCCC-C---CCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHH
Q 012808 257 WITDLAIPIVTGFLGKAW-R---TCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (456)
Q Consensus 257 ll~~~~VpVv~Gfig~~~-~---~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~ 332 (456)
+++.|.|||++||.|... . .|+..++ .+|++|+.+|.+|+||+++|+|||||||+ || .+|++++|++++++
T Consensus 178 lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~---~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~i~~i~~~ 252 (310)
T 2we5_A 178 LIKNDIITISCGGGGIPVVGQELKGVEAVI---DKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQLTNVTVA 252 (310)
T ss_dssp HHHTTCEEECCGGGCEEEETTTTEECCCCC---CHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEECCEEEHH
T ss_pred HHHCCCEEEEECCCCCCCcCCCCCCcEeec---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeECCEEcHH
Confidence 467899999998866432 1 2233323 49999999999999999999999999999 88 48999999999999
Q ss_pred HHHHHHHcC---CCcchHH--HHHHHHhCCC--CEEEec------CCCCCCCceEEe
Q 012808 333 EAAELAYFG---AQVLHPQ--SMRPAREGDI--PVRVKN------SYNPNAPGTLIR 376 (456)
Q Consensus 333 Ea~eLa~~G---a~vlhp~--a~~~a~~~~I--pv~I~n------~~~p~~~GT~I~ 376 (456)
|+.++...| ...|.|+ ++..+.++|+ +++|.| .+..+..||+|.
T Consensus 253 e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 253 ELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp HHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEEE
T ss_pred HHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEEe
Confidence 999997754 3567776 6777788888 899975 233345788885
No 38
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.83 E-value=4.2e-20 Score=181.22 Aligned_cols=148 Identities=16% Similarity=0.092 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeec
Q 012808 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (456)
Q Consensus 203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttl 282 (456)
.+++. +.++|+++|+++.++++.++++.+.. ...+...+.. +++.+.|||++||++.+ .+|.+.
T Consensus 98 ~ln~~-l~~~l~~~G~~a~~l~~~d~~~~~~g-------~~v~~~~i~~-----lL~~g~ipVi~~~~~~~-~~g~~~-- 161 (266)
T 3k4o_A 98 RFNNI-IIDTLQSYDIPAVSIQPSSFVVFGDK-------LIFDTSAIKE-----MLKRNLVPVIHGDIVID-DKNGYR-- 161 (266)
T ss_dssp HHHHH-HHHHHHTTTCCEEEECGGGTCEESSS-------CBCCCHHHHH-----HHHTTCEEEEECEEEEE-SSSCEE--
T ss_pred HHHHH-HHHHHHHCCCcEEEeeHHHcCcccCc-------eEecHHHHHH-----HHHCCCEEEEeCCEEEc-CCCCee--
Confidence 47777 57789999999999999887665432 1112232332 35789999999988877 356654
Q ss_pred cCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHH--------cCCCcchHH--HHHH
Q 012808 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVLHPQ--SMRP 352 (456)
Q Consensus 283 gRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~--------~Ga~vlhp~--a~~~ 352 (456)
++++|++|+.+|.+|+|+++++|||||||| +||++ +++++.+|+.++.. ++...|.|+ ++..
T Consensus 162 -~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~------i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~ 233 (266)
T 3k4o_A 162 -IISGDDIVPYLANELKADLILYATDVDGVL-IDNKP------IKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRK 233 (266)
T ss_dssp -EECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSSSB------CSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHH
T ss_pred -eeCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCCee------cCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHH
Confidence 445999999999999999999999999999 88865 45555444444432 234458887 3333
Q ss_pred HHhCCCCEEEecCCCCC---------CCceEEee
Q 012808 353 AREGDIPVRVKNSYNPN---------APGTLIRR 377 (456)
Q Consensus 353 a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (456)
+.+ +++|.|+..|+ ..||+|.+
T Consensus 234 a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 264 (266)
T 3k4o_A 234 NKC---RGFVFNGNKANNIYKALLGEVEGTEIDF 264 (266)
T ss_dssp TTC---EEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred Hhc---CEEEEeCCCccHHHHHhCCCCCceEEEe
Confidence 333 99999987663 57999976
No 39
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.82 E-value=2.2e-20 Score=195.54 Aligned_cols=231 Identities=19% Similarity=0.340 Sum_probs=164.3
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHH
Q 012808 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (456)
Q Consensus 80 ~~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (456)
+.++|+|+||+.+.+ .++++++.|... .+.++|||+ ++|...+.+++
T Consensus 48 ~~~iVIK~GGsv~~~--~l~~la~dI~~l~~~G~~~VvVH-GgG~~i~~~l~---------------------------- 96 (464)
T 4ab7_A 48 QQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPIVLH-GTGPQVNGRLE---------------------------- 96 (464)
T ss_dssp -CCEEEEECHHHHHH--CHHHHHHHHHHHHHTTCCCEEEE-CCCHHHHHHHH----------------------------
T ss_pred CceEEEEECHHHhhc--hHHHHHHHHHHHHHCCCeEEEEE-CCcHHHHHHHH----------------------------
Confidence 467999999997754 377888877643 245666555 66777766654
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec--
Q 012808 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (456)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~-- 234 (456)
.+++++. +.+|++++ ++.+.+.+ +.+| .+|..| ...|++.|++|+++++ |+++.+
T Consensus 97 ---~~gi~~~-----------f~~G~RvT---d~~tl~vv~mv~~-~vn~~l-v~~L~~~G~~Avglsg---g~~~a~~~ 154 (464)
T 4ab7_A 97 ---AQGIEPD-----------YIDGIRIT---DEHTMAVVRKCFL-EQNLKL-VTALEQLGVRARPITS---GVFTADYL 154 (464)
T ss_dssp ---HTTCCCC-----------EETTEECB---CHHHHHHHHHHHH-HHHHHH-HHHHHHTTCCEEEECS---SSEEEEES
T ss_pred ---HcCCCcc-----------ccCCeecC---CHHHHHHHHHHHH-HHHHHH-HHHHHhCCCCeEEECC---CcEEEEec
Confidence 2233321 34555543 45555555 3456 578775 5679999999999986 355554
Q ss_pred ---CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808 235 ---DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (456)
Q Consensus 235 ---~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (456)
+++. +++...+...+.. +++.|.|||++|+ |.+ .+|++++++ +|++|+.+|.+|+|++++++|||+
T Consensus 155 ~~~d~g~vG~I~~v~~~~I~~-----lL~~G~IPVi~~~-g~~-~~G~~~ni~---~D~~Aa~lA~~L~Ad~Li~lTdV~ 224 (464)
T 4ab7_A 155 DKDKYKLVGNIKSVTKEPIEA-----SIKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEKG 224 (464)
T ss_dssp CTTTTBSBEEEEEECCHHHHH-----HHHTTCEEEEESE-EEC-TTCBEEECC---HHHHHHHHHHHHCCSEEEEEESSC
T ss_pred CccccCCcCcccccCHHHHHH-----HHHCCcEEEEcCC-cCC-CCCCEEEec---HHHHHHHHHHHcCCCEEEEEeccc
Confidence 3453 4666666655544 3568999999996 766 479988887 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHH-HHHHHHcC--CCcchHH--HHHHHHhC---CCCEEEecC-------CCCCCCceEE
Q 012808 311 GVLTCDPNIHPHAKPVPYLTFDE-AAELAYFG--AQVLHPQ--SMRPAREG---DIPVRVKNS-------YNPNAPGTLI 375 (456)
Q Consensus 311 GV~taDP~~v~~Ak~i~~ls~~E-a~eLa~~G--a~vlhp~--a~~~a~~~---~Ipv~I~n~-------~~p~~~GT~I 375 (456)
|||++ |++++|++++++| +.+|...| ...|.|+ +++-|.+. +.++.|.+. +..+..||+|
T Consensus 225 GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v~~g~~v~I~~~~~ll~eLft~~g~GT~I 299 (464)
T 4ab7_A 225 GIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMI 299 (464)
T ss_dssp SEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTSCTTCEEEEEESTTHHHHTTSSSTTSEEE
T ss_pred ccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcccCcEEEEecChHHHHHHhcCCCCceEE
Confidence 99986 5789999999986 56676543 4568887 45556554 788998873 2345689999
Q ss_pred eec
Q 012808 376 RRS 378 (456)
Q Consensus 376 ~~~ 378 (456)
.+.
T Consensus 300 ~~~ 302 (464)
T 4ab7_A 300 RRG 302 (464)
T ss_dssp ECC
T ss_pred ecC
Confidence 875
No 40
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.81 E-value=7.9e-20 Score=191.53 Aligned_cols=234 Identities=13% Similarity=0.184 Sum_probs=160.7
Q ss_pred CcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHH
Q 012808 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (456)
Q Consensus 79 ~~~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 156 (456)
.+.++|+||||+.+. +.++++++.|... .+.++|||++|+..+++.|.+.
T Consensus 57 ~~~~iViK~GGsv~~--~~l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~-------------------------- 108 (460)
T 3s6g_A 57 QERFAVIKVGGAVIQ--DDLPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAA-------------------------- 108 (460)
T ss_dssp GGGSEEEEECHHHHH--HCHHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHH--------------------------
T ss_pred CCCEEEEEEChHHhh--hHHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHc--------------------------
Confidence 357899999998544 3478888888753 2567888887644444433332
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccce--eEEee
Q 012808 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFITT 233 (456)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~--~iit~ 233 (456)
++++. +.+|++++.+ +..+.+ ..+| .+|..|++ +|++.|++|+.+.+..+ ..++.
T Consensus 109 ------gi~~~-----------f~~G~RvTd~---~~l~vv~~~lg-~vn~~lv~-aL~~~G~~Av~lsg~~~~a~~~~~ 166 (460)
T 3s6g_A 109 ------DIPTE-----------RVDGLRVTRD---EAMPIIRDTLT-QANLALVD-AIRDAGGRAAAVPRGVFEADIVDA 166 (460)
T ss_dssp ------SCCCC-----------CCSSSCCBCT---TTHHHHHHHHH-HHHHHHHH-HHHHTTCCEEEECSSSEEEEESCT
T ss_pred ------CCCcc-----------ccCCccCCCH---HHHHHHHHHHH-HHHHHHHH-HHHhCCCCceEEecCeEEEEEecC
Confidence 22221 3345554433 333433 3346 78988876 79999999999998432 11111
Q ss_pred cCCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808 234 DDFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (456)
Q Consensus 234 ~~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (456)
.+|+. +++...+...+.. +++.|.|||++++ |.+ .+|++.+++ +|++|+.+|.+|+|++++++|||+||
T Consensus 167 ~d~g~~G~I~~v~~~~i~~-----lL~~g~IpVi~p~-g~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~Gv 236 (460)
T 3s6g_A 167 DKLGRVGEPRHIHLDLVGS-----AARAGQAAILACL-GET-PDGTLVNIN---ADVAVRALVHALQPYKVVFLTGTGGL 236 (460)
T ss_dssp TTTBSEEEEEEECCHHHHH-----HHHTTCEEEEECE-EEC-TTCCEEEEC---HHHHHHHHHHHHCCSEEEEECSSCSC
T ss_pred cccCccCcceEEcHHHHHH-----HHHCCcEEEEECc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 24553 4666666655544 3568999999985 666 478888887 99999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHH-HHHHHHHcC--CCcchHH--HHHHHHhCCCCEEEecCCCC----------CCCceEEee
Q 012808 313 LTCDPNIHPHAKPVPYLTFD-EAAELAYFG--AQVLHPQ--SMRPAREGDIPVRVKNSYNP----------NAPGTLIRR 377 (456)
Q Consensus 313 ~taDP~~v~~Ak~i~~ls~~-Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ipv~I~n~~~p----------~~~GT~I~~ 377 (456)
|+. ++++|++++.+ |+.+|...| ...|.|+ ++..+.+...++++.+...| +..||+|.+
T Consensus 237 ~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~ 310 (460)
T 3s6g_A 237 LDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRR 310 (460)
T ss_dssp BCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEEC
T ss_pred cCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEc
Confidence 984 47899999996 888887653 3467776 55566663324666655443 457999987
Q ss_pred c
Q 012808 378 S 378 (456)
Q Consensus 378 ~ 378 (456)
.
T Consensus 311 ~ 311 (460)
T 3s6g_A 311 G 311 (460)
T ss_dssp C
T ss_pred C
Confidence 5
No 41
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.74 E-value=1.8e-19 Score=188.96 Aligned_cols=234 Identities=17% Similarity=0.272 Sum_probs=158.6
Q ss_pred CcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHH
Q 012808 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (456)
Q Consensus 79 ~~~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 156 (456)
.+.++|+||||+.+.+ .++.+++.|... .+.++|||++|+. .++.+++.
T Consensus 60 ~~~~iViK~GG~v~~~--~l~~va~dI~~l~~~G~~~VvVHGgg~-~i~~~l~~-------------------------- 110 (467)
T 3s6k_A 60 AKRFAVVKVGGAVLRD--DLEALTSSLSFLQEVGLTPIVLHGAGP-QLDAELSA-------------------------- 110 (467)
T ss_dssp STTSCCCCCCHHHHTT--CCHHHHHHHHHHHTTSCCCCCCCCCCH-HHHHHHHT--------------------------
T ss_pred CCcEEEEEEChHHhhh--HHHHHHHHHHHHHHCCCcEEEEECCCh-HHHHHHHH--------------------------
Confidence 3577999999996554 367888877643 3457777777644 44444431
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHH-hhhHHHHHHHHHHHHHHcCCceEEecccce--eEEee
Q 012808 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFITT 233 (456)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~-s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~--~iit~ 233 (456)
+++++. +.+|+++ .+++..+.+. .+| .+|..|++ +|++.|++|+.+.+..+ ..++.
T Consensus 111 -----~gi~~~-----------f~~G~Rv---Td~~~l~vv~~~~g-~vn~~Lv~-aL~~~G~~Av~lsg~~~~a~~~~~ 169 (467)
T 3s6k_A 111 -----AGIEKQ-----------TVNGLRV---TSPHALAIVRKVFQ-ASNLKLVE-ALQQNGARATSITGGVFEAEYLNR 169 (467)
T ss_dssp -----TSCCCC-----------CCSSSCC---BCHHHHHHHHHHHH-HHHHHHHH-HHHHHTCCBCCCCSSSBCCCBSCS
T ss_pred -----cCCCcc-----------ccCCccC---CCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCceEEcCccEEEEeccC
Confidence 222211 2334332 2456666663 467 88998876 79999999999987432 12222
Q ss_pred cCCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808 234 DDFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (456)
Q Consensus 234 ~~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (456)
.+|+. +++...+...+.. +++.|.|||+++ +|.+ .+|+.++++ +|++|+.+|.+|+|++++|+|||+||
T Consensus 170 ~d~g~~G~I~~v~~~~i~~-----lL~~g~IpVi~p-vg~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~Gv 239 (467)
T 3s6k_A 170 DTYGLVGEVKAVNLAPIEA-----SLQAGSIPVITS-LGET-PSGQILNVN---ADFAANELVQELQPYKIIFLTGTGGL 239 (467)
T ss_dssp SSSBSBBCCCCBCCHHHHT-----HHHHTCBCCCCS-CCCC-SSSCCCBCC---HHHHHHHHHHHHCCSSCCCCCSSCSC
T ss_pred cccCccceEEEEcHHHHHH-----HHHCCCEEEEEC-ceEC-CCCcEEecC---HHHHHHHHHHhcCCCEEEEEecccce
Confidence 35553 4665556554443 356789999984 3434 368888776 99999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHH-HHHHHHHc--CCCcchHH--HHHHHHhCCCCEEEecCCCCC----------CCceEEee
Q 012808 313 LTCDPNIHPHAKPVPYLTFD-EAAELAYF--GAQVLHPQ--SMRPAREGDIPVRVKNSYNPN----------APGTLIRR 377 (456)
Q Consensus 313 ~taDP~~v~~Ak~i~~ls~~-Ea~eLa~~--Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~----------~~GT~I~~ 377 (456)
|+.| +++|++++.. |+.++... +...|.|+ ++..+.+...++++.+...|+ ..||+|.+
T Consensus 240 ~~~~------~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~ 313 (467)
T 3s6k_A 240 LDAE------GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRR 313 (467)
T ss_dssp CCSS------CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCC
T ss_pred eCCC------CCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeC
Confidence 9853 6789999985 77777754 34577776 566666643357777765553 46999986
Q ss_pred c
Q 012808 378 S 378 (456)
Q Consensus 378 ~ 378 (456)
.
T Consensus 314 ~ 314 (467)
T 3s6k_A 314 G 314 (467)
T ss_dssp C
T ss_pred C
Confidence 5
No 42
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.60 E-value=6.5e-15 Score=148.29 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=82.1
Q ss_pred cccCCceEEEcCC--CcCCC----CCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccC
Q 012808 257 WITDLAIPIVTGF--LGKAW----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (456)
Q Consensus 257 ll~~~~VpVv~Gf--ig~~~----~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls 330 (456)
+++++.|||..|. ++... .+|...+ +..|++|+.+|.+|+||.++|+|||||||+.+|+ |++++|+++|
T Consensus 199 L~~~g~Ivi~~ggggipv~~~~~~~~G~~~v---id~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~~~i~~it 273 (332)
T 4axs_A 199 NVNNGCVCIVGGGGGIPTIIQDNQYIGVDGV---IDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQKALKTVD 273 (332)
T ss_dssp HHHTTCEEECCGGGCEEEEESSSCEEECSSC---CCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTCEECSSCB
T ss_pred hhcCCeEEEecccCCCCccccCCcccCceee---echHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cchhhcccCC
Confidence 4567888776542 11110 0122222 3489999999999999999999999999998886 8899999999
Q ss_pred HHHHHHHHHcC---CCcchHH--HHHHHHhCCC--CEEEecCCCC-----CCCceEEe
Q 012808 331 FDEAAELAYFG---AQVLHPQ--SMRPAREGDI--PVRVKNSYNP-----NAPGTLIR 376 (456)
Q Consensus 331 ~~Ea~eLa~~G---a~vlhp~--a~~~a~~~~I--pv~I~n~~~p-----~~~GT~I~ 376 (456)
.+|+.++...| ...|-|| |+..+.+.+. +..|.+..+. ...||+|.
T Consensus 274 ~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g~~GT~Iv 331 (332)
T 4axs_A 274 VKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKII 331 (332)
T ss_dssp HHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTTSSSEEEB
T ss_pred HHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCCCCCcEEe
Confidence 99999998754 4569997 5555666654 5667553221 13699986
No 43
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.59 E-value=1.2e-14 Score=144.72 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=91.8
Q ss_pred ccccCCceEEEcCCCcCC--CCCCcee-eccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHH
Q 012808 256 DWITDLAIPIVTGFLGKA--WRTCAIT-TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (456)
Q Consensus 256 ~ll~~~~VpVv~Gfig~~--~~~G~vt-tlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~ 332 (456)
.|++.|.|||++||.|.. .+++..+ +...+++|++|+.+|.+|+||.|+|+|||||||+ ||+ .|++++|++++++
T Consensus 183 ~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I~~it~~ 260 (317)
T 3kzf_A 183 TLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKLEEIKLS 260 (317)
T ss_dssp HHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEECCEEEHH
T ss_pred HHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeECcCcCHH
Confidence 356789999999877752 1234443 3446779999999999999999999999999999 999 5999999999999
Q ss_pred HHHHHHHcC---CCcchHH--H-HHHHHhCCCCEEEecCCCC-----CCCceEEee
Q 012808 333 EAAELAYFG---AQVLHPQ--S-MRPAREGDIPVRVKNSYNP-----NAPGTLIRR 377 (456)
Q Consensus 333 Ea~eLa~~G---a~vlhp~--a-~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~~ 377 (456)
|+.++...| ...|.|+ + ++.+...+.+++|.|..+. ...||+|.+
T Consensus 261 e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~~GT~I~~ 316 (317)
T 3kzf_A 261 EILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIK 316 (317)
T ss_dssp HHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTSSSEEEEC
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCCCCeEEec
Confidence 999997643 3568887 4 4444556778999886321 126999875
No 44
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=99.11 E-value=3.7e-10 Score=103.86 Aligned_cols=105 Identities=16% Similarity=0.252 Sum_probs=84.0
Q ss_pred CcchHHHHHHHHhCCC--CEEEecCCCCCCCceEEeeccC--------------CccceeeEEEEecCeEEEEEEeCCCC
Q 012808 343 QVLHPQSMRPAREGDI--PVRVKNSYNPNAPGTLIRRSRD--------------MSKAVLTSIVLKRNVTMLDIVSTRML 406 (456)
Q Consensus 343 ~vlhp~a~~~a~~~~I--pv~I~n~~~p~~~GT~I~~~~~--------------~~~~~i~~I~~~~nvalIsv~g~~m~ 406 (456)
..+-.+-++++.++|| ++.+.|+++|+..+|.|+-.-. ......+.+...+++++|+++|.+|.
T Consensus 27 ~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm~ 106 (178)
T 2dtj_A 27 PGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMK 106 (178)
T ss_dssp TTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECCT
T ss_pred ccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCcc
Confidence 3444567788899995 5677788877766677752210 00112457888999999999999999
Q ss_pred CchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 407 GQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 407 ~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
+.||+++++|++|+++||||.|+++||.+|+|+|+.+|...
T Consensus 107 ~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV~~~d~~~ 147 (178)
T 2dtj_A 107 SHPGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDLDA 147 (178)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHH
T ss_pred cCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEeHHHHHH
Confidence 99999999999999999999999999999999999887654
No 45
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=98.99 E-value=6.3e-10 Score=100.19 Aligned_cols=71 Identities=32% Similarity=0.491 Sum_probs=62.0
Q ss_pred CccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCcHHHHh
Q 012808 381 MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQ 452 (456)
Q Consensus 381 ~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~~~l~~ 452 (456)
+.+..|++|+.++|+++|+|.|.+|.+.||+++++|++|+++||||+||++|+.+|+|+|++++ .-.++++
T Consensus 4 ~~~~~v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~s~~~Isf~v~~~~-~~~~il~ 74 (157)
T 3mah_A 4 TEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTIDNDK-NLPDIVR 74 (157)
T ss_dssp ---CCCCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEECCSSEEEEEESCCT-THHHHHH
T ss_pred CCCCceEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEecCCEEEEEECChH-HHHHHHH
Confidence 3456799999999999999999999999999999999999999999999999999999999877 3344443
No 46
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=98.99 E-value=1.2e-09 Score=102.48 Aligned_cols=62 Identities=15% Similarity=0.371 Sum_probs=58.8
Q ss_pred eeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 386 i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
...+.+++++++|+++|.||.+.||+++|+|++|++.||||.||++||.+||++|+++|...
T Consensus 106 ~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV~~~d~~~ 167 (200)
T 4go7_X 106 FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDK 167 (200)
T ss_dssp CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHH
T ss_pred eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999988754
No 47
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.2e-08 Score=94.19 Aligned_cols=105 Identities=13% Similarity=0.243 Sum_probs=77.6
Q ss_pred CcchHHHHHHHHhCCCCEEEecCCCCCC-Cc-eEEe---eccCCcc-----------ceeeEEEEecCeEEEEEEeCCCC
Q 012808 343 QVLHPQSMRPAREGDIPVRVKNSYNPNA-PG-TLIR---RSRDMSK-----------AVLTSIVLKRNVTMLDIVSTRML 406 (456)
Q Consensus 343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~-~G-T~I~---~~~~~~~-----------~~i~~I~~~~nvalIsv~g~~m~ 406 (456)
..+..+-+..+.++||++.......++. .| +.|+ +..+..+ .....|.+++++++|+++|.+|.
T Consensus 28 ~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~~~~~va~VsvVG~gm~ 107 (181)
T 3s1t_A 28 PGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMR 107 (181)
T ss_dssp TTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEEEESCEEEEEEEEECCT
T ss_pred cCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEEEeCCEEEEEEEecccc
Confidence 4445566777888888766543322321 22 2333 2211010 02357888999999999999999
Q ss_pred CchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 407 GQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 407 ~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
+.||+++++|++|+++||||.||++|+.+||++|+++|...
T Consensus 108 ~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~ 148 (181)
T 3s1t_A 108 SHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDK 148 (181)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHH
T ss_pred cCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHH
Confidence 99999999999999999999999999999999999988654
No 48
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=98.78 E-value=1.6e-08 Score=91.87 Aligned_cols=103 Identities=22% Similarity=0.258 Sum_probs=75.1
Q ss_pred cchHHHHHHHHhCCCCEEEecCCCCCCCc-e---EEeeccCC-----------ccceeeEEEEecCeEEEEEEeCCCCCc
Q 012808 344 VLHPQSMRPAREGDIPVRVKNSYNPNAPG-T---LIRRSRDM-----------SKAVLTSIVLKRNVTMLDIVSTRMLGQ 408 (456)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~G-T---~I~~~~~~-----------~~~~i~~I~~~~nvalIsv~g~~m~~~ 408 (456)
.+-.+-+..+.++||++.......... | + .+.+..+. ....++.+..++++++|+++|.+|.+.
T Consensus 38 G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~~~ 116 (167)
T 2re1_A 38 GVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMRSH 116 (167)
T ss_dssp THHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCTTC
T ss_pred CHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcCCC
Confidence 444566777788888766544322211 3 1 22221110 011246788899999999999999999
Q ss_pred hhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 409 YGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 409 ~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
||+++++|++|+++||||.++++|+.+|+++|+.+|...
T Consensus 117 ~Gv~a~i~~aL~~~~InI~~istse~~is~vv~~~d~~~ 155 (167)
T 2re1_A 117 VGVAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYMEL 155 (167)
T ss_dssp CCHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHH
T ss_pred cCHHHHHHHHHHHCCCcEEEEEcccCEEEEEEeHHHHHH
Confidence 999999999999999999999999999999999877653
No 49
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=98.73 E-value=1.3e-08 Score=92.48 Aligned_cols=60 Identities=22% Similarity=0.365 Sum_probs=57.0
Q ss_pred EEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 388 ~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
.+...+++++++++|.+|.+.||+++++|++|+++||||.|+++||.+|+++|+.+|...
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vv~~~d~~~ 147 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRISVIIPAEYAEA 147 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHH
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHH
Confidence 677899999999999999999999999999999999999999999999999999988754
No 50
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=98.72 E-value=1.4e-08 Score=95.21 Aligned_cols=76 Identities=22% Similarity=0.362 Sum_probs=58.4
Q ss_pred CCceEEeeccCCccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-------CCEEEEEEcC
Q 012808 370 APGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDP 442 (456)
Q Consensus 370 ~~GT~I~~~~~~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-------e~sIsi~V~~ 442 (456)
+.+++|....++.+..|++|++++|+++|+|.| |.+.||+++++|+.|+++|||||||+++ ...++|+++.
T Consensus 10 ~s~~iv~e~~~mE~~vVtGIa~~~~~a~Iti~g--~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~ 87 (200)
T 4go7_X 10 HSSGLVPRGNHMEDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 87 (200)
T ss_dssp ----------CCCSCEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred ccCceEeCCCccccCcEEEEEccCCEEEEEEec--CCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence 345677766677778899999999999999986 8999999999999999999999999754 2468899988
Q ss_pred CCcCc
Q 012808 443 SKLWS 447 (456)
Q Consensus 443 ~d~~~ 447 (456)
+++..
T Consensus 88 ~d~~~ 92 (200)
T 4go7_X 88 DVGPA 92 (200)
T ss_dssp GGHHH
T ss_pred hhHHH
Confidence 87654
No 51
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=98.58 E-value=3.6e-08 Score=89.48 Aligned_cols=68 Identities=18% Similarity=0.348 Sum_probs=58.5
Q ss_pred cceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCcCc-HHHHh
Q 012808 383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWS-RELIQ 452 (456)
Q Consensus 383 ~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~~~-~~l~~ 452 (456)
+..|++|+.++|+++|+|.| |.+.||+++++|+.|+++||||+||+++ +.+|+|+|+.++... .++++
T Consensus 13 ~~~V~gIa~~~~~~~i~v~~--~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~~~a~~~l~ 86 (167)
T 2re1_A 13 RAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILS 86 (167)
T ss_dssp --CCCEEEEECCCEEEEEEE--EECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGHHHHHHHHH
T ss_pred CCCeEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHHHHHHHHHH
Confidence 44699999999999999998 8899999999999999999999999887 789999999877543 44443
No 52
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=98.55 E-value=1.2e-07 Score=87.54 Aligned_cols=68 Identities=24% Similarity=0.351 Sum_probs=58.7
Q ss_pred cceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe--CC-----CEEEEEEcCCCcCc-HHHHh
Q 012808 383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SE-----VSLSLTLDPSKLWS-RELIQ 452 (456)
Q Consensus 383 ~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist--Se-----~sIsi~V~~~d~~~-~~l~~ 452 (456)
+..|++|+.++|+++|+|.+ |.+.||+++++|+.|+++||||+||++ ++ .+|+|+|+.+++.. .++++
T Consensus 4 ~~~V~gIa~~~~~~~Iti~~--~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~ 79 (181)
T 3s1t_A 4 DPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLD 79 (181)
T ss_dssp CCEEEEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHH
T ss_pred CCcEEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHH
Confidence 46799999999999999996 899999999999999999999999975 33 48999999988654 44443
No 53
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=98.50 E-value=8.9e-08 Score=86.86 Aligned_cols=67 Identities=21% Similarity=0.379 Sum_probs=58.0
Q ss_pred ceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-------CCEEEEEEcCCCcCc-HHHHh
Q 012808 384 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKLWS-RELIQ 452 (456)
Q Consensus 384 ~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-------e~sIsi~V~~~d~~~-~~l~~ 452 (456)
..|++|++++|+++|++.| |.+.||+++++|++|+++||||+||+++ +.+|+|+|+.++... .++++
T Consensus 5 ~~v~gIa~~~~~a~Itv~g--~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~ 79 (167)
T 2dt9_A 5 KAVTGVALDLDHAQIGLIG--IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALE 79 (167)
T ss_dssp CCEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHH
T ss_pred CceeEEEEeCCEEEEEEec--CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHH
Confidence 4699999999999999997 7889999999999999999999999876 679999999877643 34443
No 54
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=98.46 E-value=1.3e-07 Score=102.26 Aligned_cols=61 Identities=25% Similarity=0.476 Sum_probs=58.0
Q ss_pred eEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 387 TSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 387 ~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
..+.+++++++|+++|.||.++||+++++|++|+++||||.||++||.+||++|+++|...
T Consensus 519 ~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistSEi~Is~vV~~~~~~~ 579 (600)
T 3l76_A 519 AAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVD 579 (600)
T ss_dssp CEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEECSSEEEEEEEGGGHHH
T ss_pred ceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcCCceEEEEEeHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999988754
No 55
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=98.42 E-value=6.8e-07 Score=92.69 Aligned_cols=103 Identities=17% Similarity=0.303 Sum_probs=76.8
Q ss_pred cchHHHHHHHHhCCCCEEEec--CCCCCCCc-eEEe---eccCCc-----------cceeeEEEEecCeEEEEEEeCCCC
Q 012808 344 VLHPQSMRPAREGDIPVRVKN--SYNPNAPG-TLIR---RSRDMS-----------KAVLTSIVLKRNVTMLDIVSTRML 406 (456)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n--~~~p~~~G-T~I~---~~~~~~-----------~~~i~~I~~~~nvalIsv~g~~m~ 406 (456)
.+-.+-++.+.+++|.+.... +.+. ..| +.|+ +..+.. .-....+.+.+|+++|+++|.+|.
T Consensus 277 g~~~~If~~La~~~I~vd~I~q~~s~~-~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~ 355 (421)
T 3ab4_A 277 GEAAKVFRALADAEINIDMVLQNVFSV-EDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMK 355 (421)
T ss_dssp THHHHHHHHHHHTTCCCEEEEECCCC---CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGT
T ss_pred cHHHHHHHHHHHcCCcEEEEEccCccc-cCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCcc
Confidence 344567788899999877553 3210 023 2332 221110 002346888999999999999999
Q ss_pred CchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808 407 GQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 407 ~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~ 447 (456)
++||+++++|++|+++||||.|+++||.+||++|+.+|...
T Consensus 356 ~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV~~~d~~~ 396 (421)
T 3ab4_A 356 SHPGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDLDA 396 (421)
T ss_dssp SCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHH
T ss_pred cCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEeHHHHHH
Confidence 99999999999999999999999999999999999998654
No 56
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=98.35 E-value=2e-07 Score=83.66 Aligned_cols=60 Identities=15% Similarity=0.374 Sum_probs=49.9
Q ss_pred eeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 386 i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
...+.+.+++++|+++|.+|.+.||+++++|++|+ ||||.||+ +||.+|+|+|+++|...
T Consensus 79 ~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~ 140 (157)
T 3mah_A 79 IGDVTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKK 140 (157)
T ss_dssp TEEEEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHH
T ss_pred cCeEEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHH
Confidence 35788899999999999999999999999999999 99999999 89999999999988654
No 57
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=98.34 E-value=4.8e-07 Score=94.49 Aligned_cols=103 Identities=13% Similarity=0.188 Sum_probs=78.0
Q ss_pred CcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCcc------------ceeeEEEEecCeEEEEEEeCCCCCchh
Q 012808 343 QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK------------AVLTSIVLKRNVTMLDIVSTRMLGQYG 410 (456)
Q Consensus 343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~------------~~i~~I~~~~nvalIsv~g~~m~~~~g 410 (456)
..+..+-+..+.+++|++...++.. ... |...+..+..+ -....|.+.+++++|+++|.+|.+.||
T Consensus 312 ~g~~~~if~~l~~~~i~vd~i~~~~-~~i-s~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~~~~G 389 (446)
T 3tvi_A 312 VGFCRKILSILEMYGVSFEHMPSGV-DSV-SLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTKG 389 (446)
T ss_dssp TTHHHHHHHHHHTTTCCEEEBCEET-TEE-EEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGSSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCC-CEE-EEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCccCChh
Confidence 3455677888899999987765321 111 22222211110 013468889999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 411 FLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 411 ~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
+++++|++|+++||||.||+ +||.+||++|+++|...
T Consensus 390 vaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~ 428 (446)
T 3tvi_A 390 IANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEK 428 (446)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHH
Confidence 99999999999999999999 89999999999988754
No 58
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=98.32 E-value=4.9e-07 Score=82.91 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=54.3
Q ss_pred ceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-------CCEEEEEEcCCCc
Q 012808 384 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKL 445 (456)
Q Consensus 384 ~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-------e~sIsi~V~~~d~ 445 (456)
..|++|+.++|+++|+|.+ +.+.||+++++|+.|+++||||+|++++ +.+|+|+++.++.
T Consensus 4 ~~V~gIa~~~~~~~Itv~~--~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~ 70 (178)
T 2dtj_A 4 AVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDG 70 (178)
T ss_dssp CEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHH
T ss_pred CcEEEEEecCCEEEEEEec--CCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccH
Confidence 4699999999999999986 5789999999999999999999999876 7889999987665
No 59
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=98.28 E-value=2.9e-06 Score=89.30 Aligned_cols=161 Identities=19% Similarity=0.297 Sum_probs=100.4
Q ss_pred cCCCChhHHHHHHHHcCCceEEEeecC---Cc-cccCCCCCCCCCccccccCHHHH-HHHHHcCCC-----cchHHHHHH
Q 012808 283 GRGGSDLTATTIGKALGLQEIQVWKDV---DG-VLTCDPNIHPHAKPVPYLTFDEA-AELAYFGAQ-----VLHPQSMRP 352 (456)
Q Consensus 283 gRGGSD~tAa~lA~~L~A~~l~i~TDV---~G-V~taDP~~v~~Ak~i~~ls~~Ea-~eLa~~Ga~-----vlhp~a~~~ 352 (456)
|.++=+.-|+..|..-|..-.+.-+.. .| +...+.. .....+..++++.- ..+.-.|.. .+-.+.+..
T Consensus 264 g~~~m~~~a~~~a~~~gi~v~I~~~~~~~~~GT~i~~~~~--~~~~~v~gIa~~~~~a~Isv~g~~m~~~~G~~a~if~~ 341 (473)
T 3c1m_A 264 GAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDME--MSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKA 341 (473)
T ss_dssp TCTTSCGGGHHHHHHHTCCEEEEETTSTTSCCEEEESCCC--CCTTSCCEEEEEEEEEEEEEEECSSSCHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHcCCEEEEEecCCCCCceEEEecccc--ccccccchhhccCCeEEEEEecCCCCCCcCHHHHHHHH
Confidence 444545557777877787644433333 23 2222211 11223444443210 001111221 233467788
Q ss_pred HHhCCCCEEEec--CCCCCCCceEEeeccCCc-------c----------c---eeeEEEEecCeEEEEEEeCCCCCchh
Q 012808 353 AREGDIPVRVKN--SYNPNAPGTLIRRSRDMS-------K----------A---VLTSIVLKRNVTMLDIVSTRMLGQYG 410 (456)
Q Consensus 353 a~~~~Ipv~I~n--~~~p~~~GT~I~~~~~~~-------~----------~---~i~~I~~~~nvalIsv~g~~m~~~~g 410 (456)
+.+++|++...+ +.. ... |.+.+..+.. . . .+..+.+.+|+++|+++|.+|.+.||
T Consensus 342 La~~~InV~~IsQ~tse-~~I-s~~V~~~d~~~a~~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~a~vsvVG~gm~~~~G 419 (473)
T 3c1m_A 342 LGEEEVNVILISQGSSE-TNI-SLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVISVVGAGMRGAKG 419 (473)
T ss_dssp HHHTTCCEEEEEECCTT-CCE-EEEEEGGGHHHHHHHHHHHHCC----CTTSCCCEEEEEEEEEEEEEEEECTTTTTCTT
T ss_pred HHHcCCcEEEEEecCCC-CEE-EEEEechHHHHHHHHHHHHHhhhcccccccccccceEEEeCCcEEEEEEecCCCCChh
Confidence 899999987765 322 111 2333321100 0 1 14578889999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 411 FLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 411 ~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
+++++|++|+++||||.||+ +||.+||++|+.+|...
T Consensus 420 vaak~f~aL~~~~InI~misqgtSe~~Is~vV~~~d~~~ 458 (473)
T 3c1m_A 420 IAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLN 458 (473)
T ss_dssp HHHHHHHHHHHHTCCCCEEEESSCSSEEEEEEEGGGHHH
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCceEEEEEcHHHHHH
Confidence 99999999999999999999 89999999999988654
No 60
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=98.13 E-value=2.4e-06 Score=90.65 Aligned_cols=103 Identities=13% Similarity=0.196 Sum_probs=76.7
Q ss_pred CCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCC--c-------------cceeeEEEEecCeEEEEEEeCCCC
Q 012808 342 AQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDM--S-------------KAVLTSIVLKRNVTMLDIVSTRML 406 (456)
Q Consensus 342 a~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~--~-------------~~~i~~I~~~~nvalIsv~g~~m~ 406 (456)
...+-.+-+..+.+++|+|....+... .. |......+. . -..+..+.+.+|+++|+++|. |.
T Consensus 354 ~~g~~~~if~~la~~~I~vd~I~sse~-si-s~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v~~~~~~a~VsiVG~-m~ 430 (510)
T 2cdq_A 354 QVGFLAKVFSIFEELGISVDVVATSEV-SI-SLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGN-VQ 430 (510)
T ss_dssp CTTHHHHHHHHHHHTTCCEEEEEEETT-EE-EEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEEEEEEEEEEEEC-GG
T ss_pred cccHHHHHHHHHHHcCCcEEEEEeCCC-eE-EEEEechHhhhhhHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEEEE-CC
Confidence 345556788889999999776643211 11 222221110 0 011357888999999999999 99
Q ss_pred CchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 407 GQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 407 ~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
+.||+++++|++|+++||||.||+ +||.+|||+|+++|...
T Consensus 431 ~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~ 473 (510)
T 2cdq_A 431 HSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEG 473 (510)
T ss_dssp GHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHH
T ss_pred CChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHH
Confidence 999999999999999999999999 79999999999987643
No 61
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=97.77 E-value=8.5e-06 Score=85.17 Aligned_cols=60 Identities=12% Similarity=0.283 Sum_probs=55.0
Q ss_pred eeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808 386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS 447 (456)
Q Consensus 386 i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~ 447 (456)
+..+.+.+|+++|+++|.+|.+.||+++++|++|++ |||.||+ +||.+|||+|+++|...
T Consensus 377 ~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsqg~Se~~Is~vV~~~d~~~ 438 (449)
T 2j0w_A 377 LCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDAEQ 438 (449)
T ss_dssp HSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGHHH
T ss_pred CCeEEEeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEecCCCcEEEEEEeHHHHHH
Confidence 456888999999999999999999999999999965 9999999 99999999999998644
No 62
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=97.31 E-value=0.00039 Score=60.81 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=47.9
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcE-EEEEe-CCCEEEEEEcCCCcCc-HHHHhhhc
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISV-DVVAT-SEVSLSLTLDPSKLWS-RELIQQAS 455 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V-~~Ist-Se~sIsi~V~~~d~~~-~~l~~~~~ 455 (456)
..++.|.+|.++||.++++|++|+++|||| .++++ ++..+++.++.+|... .+.+++.+
T Consensus 71 ~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~~g 132 (144)
T 2f06_A 71 ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKEKK 132 (144)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHTT
T ss_pred eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHHcC
Confidence 346788789999999999999999999999 55666 8899999998887654 56666543
No 63
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=92.62 E-value=0.19 Score=43.36 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=28.7
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEeC---CCE-EEEEE
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVATS---EVS-LSLTL 440 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~IstS---e~s-Isi~V 440 (456)
+.+.||.++++|+.|+++||||++++++ +.. +.|++
T Consensus 13 v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~ 52 (144)
T 2f06_A 13 LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV 52 (144)
T ss_dssp ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred ecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe
Confidence 5678999999999999999999999643 224 45664
No 64
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=82.58 E-value=4.4 Score=34.97 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=52.6
Q ss_pred ceEEeeccCCccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808 372 GTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW 446 (456)
Q Consensus 372 GT~I~~~~~~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~ 446 (456)
-|+|.+.... ..++...+....|+|.|..-.+..|+++.+-+.|+++||++..|++-..+.-| |+++++.
T Consensus 43 lSvV~~~~~~----p~~~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif~iSty~tD~Il-Vp~~~~~ 112 (134)
T 1zhv_A 43 LSIVCLIDRI----PQDVRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDHLL-VRSNDLE 112 (134)
T ss_dssp EEEEEEGGGS----CTTSEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSCEEEE-EEGGGHH
T ss_pred EEEEEehhhC----ccCCccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEEeccccEEE-EeHHHHH
Confidence 4666654321 12346678889999998766788999999999999999999999988777654 5555543
No 65
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=78.69 E-value=3.6 Score=37.78 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=35.2
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEe--C-C---CEEEEEEcCCCcCcHHHHhh
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVAT--S-E---VSLSLTLDPSKLWSRELIQQ 453 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Ist--S-e---~sIsi~V~~~d~~~~~l~~~ 453 (456)
+.+.||.++++...|++.|+||+-++. + + ..+++.|+.++-.-.+|.+|
T Consensus 36 VeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQ 90 (193)
T 2fgc_A 36 VHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQ 90 (193)
T ss_dssp EECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 457999999999999999999997752 2 2 45777887554333444443
No 66
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=77.68 E-value=4.1 Score=35.11 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=43.6
Q ss_pred EEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808 390 VLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW 446 (456)
Q Consensus 390 ~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~ 446 (456)
........|+|.|..-....|+++.+-+.|+++||++..+++-..+-- .|+++++.
T Consensus 66 ~~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~iSty~tDhI-lVp~~~~~ 121 (133)
T 1zvp_A 66 ESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYYHDHI-FVQKEKAQ 121 (133)
T ss_dssp CCCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEECSSCEEE-EEEGGGHH
T ss_pred ccCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEEEEeccccEE-EEehhHHH
Confidence 445778889999876678999999999999999999999998776654 45555543
No 67
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=74.06 E-value=4.7 Score=30.80 Aligned_cols=32 Identities=9% Similarity=0.235 Sum_probs=26.3
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe
Q 012808 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (456)
Q Consensus 397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist 431 (456)
.|++.. .+.||.++++.++|+++|+||.-+..
T Consensus 7 ~l~v~~---~Dr~G~L~~I~~~la~~~inI~~i~~ 38 (88)
T 2ko1_A 7 GIRIVG---EDKNGMTNQITGVISKFDTNIRTIVL 38 (88)
T ss_dssp EEEEEE---ECCTTHHHHHHHHHTTSSSCEEEEEE
T ss_pred EEEEEE---ECCCcHHHHHHHHHHHCCCCeEEEEE
Confidence 455553 46899999999999999999988753
No 68
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=73.46 E-value=5.2 Score=30.97 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=28.3
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
...|++.+. +.||+++++.+.|+++|+||.-+.
T Consensus 5 ~~~l~v~~~---DrpGila~vt~~la~~~~NI~~i~ 37 (91)
T 1zpv_A 5 KAIITVVGK---DKSGIVAGVSGKIAELGLNIDDIS 37 (91)
T ss_dssp EEEEEEEES---CCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEEEC---CCCCHHHHHHHHHHHcCCCEEEEE
Confidence 356788864 599999999999999999998875
No 69
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=69.24 E-value=4 Score=36.46 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEE--eCC----CEEEEEEcCC
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVA--TSE----VSLSLTLDPS 443 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Is--tSe----~sIsi~V~~~ 443 (456)
..+.||.++++...|++.|+||+.++ .++ ..+.+.++.+
T Consensus 11 veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d 55 (165)
T 2pc6_A 11 MENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP 55 (165)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC
T ss_pred EeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc
Confidence 34799999999999999999998765 233 4577788744
No 70
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=68.32 E-value=5.1 Score=35.70 Aligned_cols=39 Identities=13% Similarity=0.348 Sum_probs=30.5
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEEe--CC----CEEEEEEcCC
Q 012808 405 MLGQYGFLAKVFSTFEDLGISVDVVAT--SE----VSLSLTLDPS 443 (456)
Q Consensus 405 m~~~~g~~akif~~L~~~gI~V~~Ist--Se----~sIsi~V~~~ 443 (456)
..+.||.++++...|++.|+||+-++. ++ ..+.|.++.+
T Consensus 10 v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d 54 (164)
T 2f1f_A 10 LENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD 54 (164)
T ss_dssp EECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC
T ss_pred EeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEecc
Confidence 347999999999999999999987652 33 4577788733
No 71
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=58.79 E-value=11 Score=33.98 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=29.8
Q ss_pred CeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe
Q 012808 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (456)
Q Consensus 394 nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist 431 (456)
+..+|+|.|. +.||++++|.+.|+++|+||.-+.+
T Consensus 92 ~~~iltv~g~---DrpGiva~Vt~~La~~g~nI~~~~~ 126 (195)
T 2nyi_A 92 REYELYVEGP---DSEGIVEAVTAVLAKKGANIVELET 126 (195)
T ss_dssp EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred cEEEEEEEeC---CCcCHHHHHHHHHHHcCCCEEEcee
Confidence 3467888885 4999999999999999999998863
No 72
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=56.59 E-value=29 Score=30.93 Aligned_cols=69 Identities=14% Similarity=0.259 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeecc
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlg 283 (456)
-|+..+++.|.+.|+..... +++-+ +...+.+.+... ++...+.|++|-.|.+.
T Consensus 23 tN~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~I~~~l~~a-~~~~DlVittGG~g~~~--------- 76 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRG-----FVVMD-----------DLDEIGWAFRVA-LEVSDLVVSSGGLGPTF--------- 76 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHH-HHHCSEEEEESCCSSST---------
T ss_pred HHHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCEEEEcCCCcCCc---------
Confidence 47778889999999976542 13322 234455555432 33456888888565442
Q ss_pred CCCChhHHHHHHHHcCCc
Q 012808 284 RGGSDLTATTIGKALGLQ 301 (456)
Q Consensus 284 RGGSD~tAa~lA~~L~A~ 301 (456)
-|+|.-.++.+++.+
T Consensus 77 ---~D~T~ea~a~~~~~~ 91 (172)
T 3kbq_A 77 ---DDMTVEGFAKCIGQD 91 (172)
T ss_dssp ---TCCHHHHHHHHHTCC
T ss_pred ---ccchHHHHHHHcCCC
Confidence 699999999999954
No 73
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=54.02 E-value=59 Score=33.95 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
.+.||+++++...|.++||||..+.
T Consensus 462 ~D~PG~I~~v~~~Lg~~~INIa~m~ 486 (529)
T 1ygy_A 462 VDRPGALGKIGTLLGTAGVNIQAAQ 486 (529)
T ss_dssp SCCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCchHHHHHHHHHhcCCCeeeEE
Confidence 4789999999999999999998775
No 74
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=50.64 E-value=34 Score=30.28 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=28.3
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
..+|++.+. +.||++++|.+.|+++|+||+-+.
T Consensus 93 ~~~l~v~~~---D~~Gil~~v~~~l~~~~~nI~~~~ 125 (192)
T 1u8s_A 93 TVEVYVESD---DKLGLTEKFTQFFAQRQIGMASLS 125 (192)
T ss_dssp EEEEEEEES---CCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEEeC---CCccHHHHHHHHHHHcCCcHHHhh
Confidence 456788874 589999999999999999998875
No 75
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=49.20 E-value=33 Score=30.37 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=33.5
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe----CCCEEEEEEcC
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT----SEVSLSLTLDP 442 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist----Se~sIsi~V~~ 442 (456)
...|+|.|. +.||+++++...|+++|+||.-+.. ....+.+.+..
T Consensus 6 ~~~itv~~~---DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~ 54 (192)
T 1u8s_A 6 HLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG 54 (192)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEcC---CCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec
Confidence 457888875 5999999999999999999987642 23444455543
No 76
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=46.22 E-value=86 Score=30.12 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=69.1
Q ss_pred CCCccccccCHHHHHHHHHcCC----CcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeec-cCCcc----c---eeeE
Q 012808 321 PHAKPVPYLTFDEAAELAYFGA----QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS-RDMSK----A---VLTS 388 (456)
Q Consensus 321 ~~Ak~i~~ls~~Ea~eLa~~Ga----~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~-~~~~~----~---~i~~ 388 (456)
|+++.++.-|-.+|.++...+. -.+-++.+ |..+|.+|.-.|-.+...--|++--- +.... . .-++
T Consensus 120 p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~A--A~~ygL~il~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~~~ 197 (283)
T 2qmx_A 120 PQIRAEAAYDTAGSAKMVAESRDKSALAIASKRA--GELYGLDILKENLADEEWNITRFFCIAHENNPDISHLKVRPDVA 197 (283)
T ss_dssp TTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHH--HHHTTCEEEESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCEEE
T ss_pred CCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHH--HHHcCCceecccCcCCCCCeeeEEEEecCccccccccccCCCCC
Confidence 5677888888888887765431 13333322 56789999888876654445765421 10001 0 0111
Q ss_pred EEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE-----eCCCEEEEEEcCC
Q 012808 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA-----TSEVSLSLTLDPS 443 (456)
Q Consensus 389 I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is-----tSe~sIsi~V~~~ 443 (456)
.+-+-|-+. ..+.||.+.++++.|+++|||.-.|- ...-.-.|.||-+
T Consensus 198 ----~~ktsl~f~---~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e 250 (283)
T 2qmx_A 198 ----RQKTSIVFA---LPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI 250 (283)
T ss_dssp ----EEEEEEEEE---EECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE
T ss_pred ----CceEEEEEE---cCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe
Confidence 122222222 23679999999999999999988884 2345667777644
No 77
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=40.66 E-value=53 Score=29.33 Aligned_cols=44 Identities=5% Similarity=0.223 Sum_probs=33.1
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE----eCCCEEEEEEc
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA----TSEVSLSLTLD 441 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is----tSe~sIsi~V~ 441 (456)
...|+|.|. +.||+.+++...|+++|+||.-.. .....+.+.+.
T Consensus 5 ~~~ltv~~~---DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~ 52 (195)
T 2nyi_A 5 SFVVSVAGS---DRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVS 52 (195)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEeC---CCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEE
Confidence 467888875 599999999999999999987753 22343455554
No 78
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=37.83 E-value=70 Score=28.08 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhcccc--CCceEEEcCCCcCCCCCCcee
Q 012808 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAIT 280 (456)
Q Consensus 203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~--~~~VpVv~Gfig~~~~~G~vt 280 (456)
.-|+..+++.|++.|+..... +++.+ +.+.+.+.+... ++ ...+.|++|-.|.+.
T Consensus 27 D~n~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~a-~~~~~~DlVittGG~g~~~------ 83 (172)
T 1mkz_A 27 DTSGHYLRDSAQEAGHHVVDK-----AIVKE-----------NRYAIRAQVSAW-IASDDVQVVLITGGTGLTE------ 83 (172)
T ss_dssp CHHHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHH-HHSSSCCEEEEESCCSSST------
T ss_pred CccHHHHHHHHHHCCCeEeEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCCCEEEeCCCCCCCC------
Confidence 357778889999999976542 13322 234455555442 33 256888888565442
Q ss_pred eccCCCChhHHHHHHHHcC
Q 012808 281 TLGRGGSDLTATTIGKALG 299 (456)
Q Consensus 281 tlgRGGSD~tAa~lA~~L~ 299 (456)
-|+|.-.++.+++
T Consensus 84 ------~D~t~ea~~~~~~ 96 (172)
T 1mkz_A 84 ------GDQAPEALLPLFD 96 (172)
T ss_dssp ------TCCHHHHHGGGCS
T ss_pred ------CCCHHHHHHHHhc
Confidence 6888888887775
No 79
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=37.08 E-value=26 Score=34.89 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=29.7
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist 431 (456)
..+|++.|. +.||+.++|...|+++|+||.-+++
T Consensus 12 ~~~lt~~g~---Dr~Giv~~vs~~l~~~~~nI~d~~q 45 (415)
T 3p96_A 12 SVLITVTGV---DQPGVTATLFEVLSRHGVELLNVEQ 45 (415)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHTTTTCEEEEEEE
T ss_pred eEEEEEEcC---CCCCHHHHHHHHHHHCCCCEEEeee
Confidence 467899985 5899999999999999999988763
No 80
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=35.65 E-value=87 Score=27.28 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhcccc--CCceEEEcCCCcCCCCCCceee
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAITT 281 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~--~~~VpVv~Gfig~~~~~G~vtt 281 (456)
-|+..+++.|++.|+..... +++-+ +.+.+.+.+... ++ ...+.|++|-.|.+.
T Consensus 31 sn~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~~-~~~~~~DlVittGG~g~g~------- 86 (169)
T 1y5e_A 31 KSGQLLHELLKEAGHKVTSY-----EIVKD-----------DKESIQQAVLAG-YHKEDVDVVLTNGGTGITK------- 86 (169)
T ss_dssp HHHHHHHHHHHHHTCEEEEE-----EEECS-----------SHHHHHHHHHHH-HTCTTCSEEEEECCCSSST-------
T ss_pred ChHHHHHHHHHHCCCeEeEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCCCEEEEcCCCCCCC-------
Confidence 47777888999999976442 23322 234455555542 34 456888888565442
Q ss_pred ccCCCChhHHHHHHHHcC
Q 012808 282 LGRGGSDLTATTIGKALG 299 (456)
Q Consensus 282 lgRGGSD~tAa~lA~~L~ 299 (456)
-|+|.-.++..++
T Consensus 87 -----~D~t~ea~~~~~~ 99 (169)
T 1y5e_A 87 -----RDVTIEAVSALLD 99 (169)
T ss_dssp -----TCCHHHHHHTTCS
T ss_pred -----CCCcHHHHHHHcC
Confidence 5888888887654
No 81
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=33.17 E-value=93 Score=31.49 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeecc
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlg 283 (456)
-|+..+++.|++.|+.... .+++.++ .+.+.+.+... ++...+.|++|-.+.+
T Consensus 208 sN~~~L~~~l~~~G~~v~~-----~~iv~Dd-----------~~~i~~~l~~a-~~~~DlVittGG~s~g---------- 260 (419)
T 2fts_A 208 SNRSTLLATIQEHGYPTIN-----LGIVGDN-----------PDDLLNALNEG-ISRADVIITSGGVSMG---------- 260 (419)
T ss_dssp CHHHHHHHHHHTTTCCEEE-----EEEECSS-----------HHHHHHHHHHH-HHHCSEEEEESCCSSS----------
T ss_pred CchHHHHHHHHHCCCEEEE-----EeecCCC-----------HHHHHHHHHHH-HhcCCEEEEcCCCcCC----------
Confidence 3677788999999997654 2233222 34455555432 3335677888845433
Q ss_pred CCCChhHHHHHHHHcCCceEEEe
Q 012808 284 RGGSDLTATTIGKALGLQEIQVW 306 (456)
Q Consensus 284 RGGSD~tAa~lA~~L~A~~l~i~ 306 (456)
.-|++-..++..++. ++.+|
T Consensus 261 --~~D~t~~al~~~lg~-~~~f~ 280 (419)
T 2fts_A 261 --EKDYLKQVLDIDLHA-QIHFG 280 (419)
T ss_dssp --CCHHHHHHHHTTTCC-EEEES
T ss_pred --CcccHHHHHHHHcCC-ceEEe
Confidence 269999999888887 56666
No 82
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=33.05 E-value=53 Score=31.61 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=30.2
Q ss_pred CeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe
Q 012808 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (456)
Q Consensus 394 nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist 431 (456)
+-.+|++.|. +.||++++|.+.|+++|+||.-+++
T Consensus 6 ~~~vLtv~c~---Dr~GIVa~Vs~~La~~g~NI~d~~q 40 (287)
T 3nrb_A 6 NQYVLSLACQ---DAPGIVSEVSTFLFNNGANIVEAEQ 40 (287)
T ss_dssp TEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred CeEEEEEECC---CCCCHHHHHHHHHHHCCCCEEeeee
Confidence 3467889985 5899999999999999999998875
No 83
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=32.94 E-value=50 Score=32.11 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=29.3
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS 432 (456)
.+|++.|. +.||++++|.+.|+++|+||.-+++.
T Consensus 23 ~iLtv~c~---DrpGIVa~VS~~La~~g~NI~d~~q~ 56 (302)
T 3o1l_A 23 FRLVIACP---DRVGIVAKVSNFLASHNGWITEASHH 56 (302)
T ss_dssp EEEEEEEE---CCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEECC---CCCCHHHHHHHHHHHCCCCEEEeeEE
Confidence 46888875 58999999999999999999988643
No 84
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=31.15 E-value=53 Score=31.61 Aligned_cols=34 Identities=12% Similarity=-0.048 Sum_probs=29.5
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS 432 (456)
..|++.|. +.||++++|.+.|+++|+||.-+++.
T Consensus 9 ~vLtv~c~---DrpGIVa~Vs~~La~~g~NI~d~~q~ 42 (286)
T 3n0v_A 9 WILTADCP---SMLGTVDVVTRYLFEQRCYVTEHHSF 42 (286)
T ss_dssp EEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEeC---CCCCHHHHHHHHHHHCCCCeeeeeee
Confidence 56888875 58999999999999999999988643
No 85
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=30.26 E-value=47 Score=31.99 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=29.2
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe
Q 012808 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (456)
Q Consensus 396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist 431 (456)
..|++.|. +.||++++|.+.|+++|+||.-+++
T Consensus 7 ~iLtv~g~---DrpGIVa~Vs~~La~~g~NI~d~~q 39 (288)
T 3obi_A 7 YVLTLSCP---DRAGIVSAVSTFLFENGQNILDAQQ 39 (288)
T ss_dssp EEEEEEEE---CCTTHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEEECC---CCCCHHHHHHHHHHHCCCcEEeeee
Confidence 56888885 5899999999999999999998875
No 86
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=29.88 E-value=1.3e+02 Score=26.51 Aligned_cols=67 Identities=22% Similarity=0.228 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccC--CceEEEcCCCcCCCCCCceee
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD--LAIPIVTGFLGKAWRTCAITT 281 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~--~~VpVv~Gfig~~~~~G~vtt 281 (456)
-|+..+++.|++.|+.... .+++-+ +.+.+.+.+... +++ ..+.|++|-.|.+
T Consensus 40 sn~~~L~~~l~~~G~~v~~-----~~iv~D-----------d~~~I~~al~~a-~~~~~~DlVittGG~s~g-------- 94 (178)
T 2pjk_A 40 ESGDIIKQLLIENGHKIIG-----YSLVPD-----------DKIKILKAFTDA-LSIDEVDVIISTGGTGYS-------- 94 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEE-----EEEECS-----------CHHHHHHHHHHH-HTCTTCCEEEEESCCSSS--------
T ss_pred hHHHHHHHHHHHCCCEEEE-----EEEeCC-----------CHHHHHHHHHHH-HhcCCCCEEEECCCCCCC--------
Confidence 4667788889999997653 223322 234555555543 344 4688888855543
Q ss_pred ccCCCChhHHHHHHHHcC
Q 012808 282 LGRGGSDLTATTIGKALG 299 (456)
Q Consensus 282 lgRGGSD~tAa~lA~~L~ 299 (456)
.-|++.-.++..++
T Consensus 95 ----~~D~t~eal~~~~~ 108 (178)
T 2pjk_A 95 ----PTDITVETIRKLFD 108 (178)
T ss_dssp ----TTCCHHHHHGGGCS
T ss_pred ----CCcchHHHHHHHhc
Confidence 15888888887755
No 87
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=29.61 E-value=2.2e+02 Score=27.68 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=66.7
Q ss_pred CCCccccccCHHHHHHHHHcCC----CcchHHHHHHHHhCC-CCEEEecCCCCCCCceEEe---eccCCccceeeEEEEe
Q 012808 321 PHAKPVPYLTFDEAAELAYFGA----QVLHPQSMRPAREGD-IPVRVKNSYNPNAPGTLIR---RSRDMSKAVLTSIVLK 392 (456)
Q Consensus 321 ~~Ak~i~~ls~~Ea~eLa~~Ga----~vlhp~a~~~a~~~~-Ipv~I~n~~~p~~~GT~I~---~~~~~~~~~i~~I~~~ 392 (456)
|+++.++.-|-.+|.++...+. -.+-++.+ |..+| .+|.-.|-.+...--|++- +....... + .
T Consensus 127 p~~~~v~~~STA~AA~~va~~~~~~~AAIas~~A--A~~Yg~L~il~~~I~D~~~N~TRFlvl~~~~~~~~~--~----~ 198 (313)
T 3mwb_A 127 PNADYVPGSSTAASAMGLLEDDAPYEAAICAPLI--AAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALPER--T----G 198 (313)
T ss_dssp TTCEEEECSCHHHHHHHTTSTTCSCSEEEECHHH--HHHCTTCEEEESCCCSCTTCEEEEEEEECSCCCCCC--C----S
T ss_pred CCCEEEEcCcHHHHHHHHHhCCCCCccccCcHHH--HHHcCChhhhhhcccCCCcceeEEEEEecCCCCCCC--C----C
Confidence 5677888888888888765432 13333322 56788 9998888766544557653 21110000 0 0
Q ss_pred cCeEEEEEEeCCCC-CchhHHHHHHHHHHhCCCcEEEEEe-----CCCEEEEEEcC
Q 012808 393 RNVTMLDIVSTRML-GQYGFLAKVFSTFEDLGISVDVVAT-----SEVSLSLTLDP 442 (456)
Q Consensus 393 ~nvalIsv~g~~m~-~~~g~~akif~~L~~~gI~V~~Ist-----Se~sIsi~V~~ 442 (456)
.+-+-|-+. +. +.||.+.++++.|+++|||.--|-+ ..-.-.|.||-
T Consensus 199 ~~kTSl~f~---~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 251 (313)
T 3mwb_A 199 ADKTTVVVP---LPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA 251 (313)
T ss_dssp SEEEEEEEE---CSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred CCeEEEEEE---eCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence 112222222 32 6899999999999999999888742 23345666653
No 88
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=28.68 E-value=65 Score=32.46 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.2
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEE
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVA 430 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~Is 430 (456)
.+.||+++++-++|+++||||..+.
T Consensus 339 ~d~PGvi~~i~~iL~~~~iNIa~m~ 363 (404)
T 1sc6_A 339 ENRPGVLTALNKIFAEQGVNIAAQY 363 (404)
T ss_dssp ESCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHhh
Confidence 3789999999999999999997653
No 89
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=27.93 E-value=51 Score=31.82 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=30.0
Q ss_pred eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC
Q 012808 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432 (456)
Q Consensus 395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS 432 (456)
-..|++.|. +.||++++|.+.|+++|+||.-+++.
T Consensus 10 ~~vLtv~c~---Dr~GIVa~Vs~~La~~g~NI~d~~q~ 44 (292)
T 3lou_A 10 QFVLTLSCP---SAAGQVAAVVGLLDRHRCYVDELTVF 44 (292)
T ss_dssp EEEEEEEEE---SCSCHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cEEEEEEcC---CCCCHHHHHHHHHHHCCCCEEeeEEE
Confidence 356888885 58999999999999999999988743
No 90
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=26.85 E-value=91 Score=27.02 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhcccc--CCceEEEcCCCcCCCCCCceeec
Q 012808 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAITTL 282 (456)
Q Consensus 205 sa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~--~~~VpVv~Gfig~~~~~G~vttl 282 (456)
|+..+++.|++.|+..... +++- | +.+.+.+.+... ++ ...+.|++|-.|.+.
T Consensus 22 n~~~l~~~l~~~G~~v~~~-----~iv~-D----------d~~~i~~~l~~~-~~~~~~DlVittGG~g~g~-------- 76 (164)
T 2is8_A 22 THLAIREVLAGGPFEVAAY-----ELVP-D----------EPPMIKKVLRLW-ADREGLDLILTNGGTGLAP-------- 76 (164)
T ss_dssp HHHHHHHHHTTSSEEEEEE-----EEEC-S----------CHHHHHHHHHHH-HHTSCCSEEEEESCCSSST--------
T ss_pred hHHHHHHHHHHCCCeEeEE-----EEcC-C----------CHHHHHHHHHHH-HhcCCCCEEEEcCCCCCCC--------
Confidence 6677888899999865432 1322 2 234455555543 33 456888888555442
Q ss_pred cCCCChhHHHHHHHHcC
Q 012808 283 GRGGSDLTATTIGKALG 299 (456)
Q Consensus 283 gRGGSD~tAa~lA~~L~ 299 (456)
-|+|.-.++.+++
T Consensus 77 ----~D~t~ea~~~~~~ 89 (164)
T 2is8_A 77 ----RDRTPEATRELLD 89 (164)
T ss_dssp ----TCCHHHHHHTTCS
T ss_pred ----CCChHHHHHHHhC
Confidence 6888888887654
No 91
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=24.44 E-value=1.4e+02 Score=26.68 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeec
Q 012808 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (456)
Q Consensus 203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttl 282 (456)
.-|...+++.|++.|+....+ +++-+ +.+.+.+.+...+.++..+.|++|-.|.+.
T Consensus 48 Dsn~~~L~~~L~~~G~~v~~~-----~iv~D-----------d~~~I~~al~~a~~~~~DlVIttGGts~g~-------- 103 (185)
T 3rfq_A 48 DHSGPLVTELLTEAGFVVDGV-----VAVEA-----------DEVDIRNALNTAVIGGVDLVVSVGGTGVTP-------- 103 (185)
T ss_dssp CSHHHHHHHHHHHTTEEEEEE-----EEECS-----------CHHHHHHHHHHHHHTTCSEEEEESCCSSST--------
T ss_pred CcHHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHHHhCCCCEEEECCCCCCCC--------
Confidence 347788899999999876542 23322 234455555542214556888888555432
Q ss_pred cCCCChhHHHHHHHHcC
Q 012808 283 GRGGSDLTATTIGKALG 299 (456)
Q Consensus 283 gRGGSD~tAa~lA~~L~ 299 (456)
-|+|.-.++..++
T Consensus 104 ----~D~t~eal~~l~~ 116 (185)
T 3rfq_A 104 ----RDVTPESTREILD 116 (185)
T ss_dssp ----TCCHHHHHHTTCS
T ss_pred ----cccHHHHHHHHhc
Confidence 6888888877765
No 92
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=24.32 E-value=2.4e+02 Score=28.36 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeecc
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlg 283 (456)
-|...+++.|++.|..... .+++.++ .+.+.+.+... ++...+.|++|-.+.+
T Consensus 204 sn~~~L~~~l~~~G~~v~~-----~~iv~Dd-----------~~~i~~al~~a-~~~~DlvittGG~s~g---------- 256 (411)
T 1g8l_A 204 TNRLAVHLMLEQLGCEVIN-----LGIIRDD-----------PHALRAAFIEA-DSQADVVISSGGVSVG---------- 256 (411)
T ss_dssp CHHHHHHHHHHHTTCEEEE-----EEEECSC-----------HHHHHHHHHHH-HHHCSEEEECSSSCSS----------
T ss_pred CchHHHHHHHHHCCCEEEE-----EEEeCCC-----------HHHHHHHHHHH-hhcCCEEEECCCCCCC----------
Confidence 3677888999999997654 2233322 34455555432 3344688888855433
Q ss_pred CCCChhHHHHHHHHcCCceEEEe
Q 012808 284 RGGSDLTATTIGKALGLQEIQVW 306 (456)
Q Consensus 284 RGGSD~tAa~lA~~L~A~~l~i~ 306 (456)
.-|++--.++.. | ++.+|
T Consensus 257 --~~D~t~~al~~~-G--~i~f~ 274 (411)
T 1g8l_A 257 --EADYTKTILEEL-G--EIAFW 274 (411)
T ss_dssp --SCSHHHHHHHHH-S--EEEEE
T ss_pred --CcccHHHHHHhc-C--cEEEE
Confidence 269999999875 6 67777
No 93
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=23.78 E-value=73 Score=29.63 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=19.8
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEEe
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVAT 431 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~Ist 431 (456)
.+.||+++++.+.|+++++||..+++
T Consensus 12 ~DRpGLLsDIt~vLAe~kiNIltIn~ 37 (223)
T 1y7p_A 12 ENKIGVLRDLTTIIAEEGGNITFAQT 37 (223)
T ss_dssp ECCTTHHHHHHHHCC----CEEEEEE
T ss_pred cCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 46899999999999999999999963
No 94
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=23.61 E-value=1.8e+02 Score=25.26 Aligned_cols=67 Identities=24% Similarity=0.251 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccc-cCCceEEEcCCCcCCCCCCceeec
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI-TDLAIPIVTGFLGKAWRTCAITTL 282 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll-~~~~VpVv~Gfig~~~~~G~vttl 282 (456)
-|...+++.|++.|++.... +++-+ +.+.+.+.+...+. ....+.|++|-.|.+.
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~-----~iV~D-----------d~~~i~~al~~~~a~~~~DlVittGG~g~~~-------- 95 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGY-----SLVPD-----------DKIKILKAFTDALSIDEVDVIISTGGTGYSP-------- 95 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHHHTCTTCCEEEEESCCSSST--------
T ss_pred chHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHHHhcCCCCEEEecCCcccCC--------
Confidence 36677888999999987542 23322 23344444443221 2346888888666542
Q ss_pred cCCCChhHHHHHHHHc
Q 012808 283 GRGGSDLTATTIGKAL 298 (456)
Q Consensus 283 gRGGSD~tAa~lA~~L 298 (456)
-|+|.-.++..+
T Consensus 96 ----~D~t~ea~~~~~ 107 (178)
T 3iwt_A 96 ----TDITVETIRKLF 107 (178)
T ss_dssp ----TCCHHHHHGGGC
T ss_pred ----CCchHHHHHHhh
Confidence 577777766554
No 95
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=21.91 E-value=1.2e+02 Score=26.25 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=38.2
Q ss_pred HHHHHHHHH----HHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhcccc-CCceEEEcCCCcCCCCCCc
Q 012808 204 MSTRIFAAY----LNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCA 278 (456)
Q Consensus 204 lsa~lla~~----L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~-~~~VpVv~Gfig~~~~~G~ 278 (456)
-|+..+++. |++.|+....+ +++-+ +.+.+.+.+... ++ ...+.|++|-.|.+.
T Consensus 25 ~n~~~l~~~~~~~l~~~G~~v~~~-----~iv~D-----------d~~~I~~~l~~a-~~~~~DlVittGG~g~~~---- 83 (167)
T 2g2c_A 25 KALPLLQRLMSDELQDYSYELISE-----VVVPE-----------GYDTVVEAIATA-LKQGARFIITAGGTGIRA---- 83 (167)
T ss_dssp CHHHHHHHHHCC----CEEEEEEE-----EEECS-----------SHHHHHHHHHHH-HHTTCSEEEEESCCSSST----
T ss_pred cHHHHHHHhHHhHHHHCCCEEeEE-----EEeCC-----------CHHHHHHHHHHH-HhCCCCEEEECCCCCCCC----
Confidence 366777888 88888765432 23322 234455555543 33 356888888565442
Q ss_pred eeeccCCCChhHHHHHHHHcC
Q 012808 279 ITTLGRGGSDLTATTIGKALG 299 (456)
Q Consensus 279 vttlgRGGSD~tAa~lA~~L~ 299 (456)
-|+|.-.++..++
T Consensus 84 --------~D~t~ea~~~~~~ 96 (167)
T 2g2c_A 84 --------KNQTPEATASFIH 96 (167)
T ss_dssp --------TCCHHHHHHTTCS
T ss_pred --------CcChHHHHHHHhC
Confidence 5888888887654
No 96
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=21.77 E-value=2.1e+02 Score=28.72 Aligned_cols=71 Identities=20% Similarity=0.323 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeecc
Q 012808 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (456)
Q Consensus 204 lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlg 283 (456)
-|+..+++.|++.|+.... .+++.++ .+.+.+.+... +++..+.|++|-.+.+
T Consensus 207 sN~~~L~~~l~~~G~~v~~-----~~iv~Dd-----------~~~i~~~l~~a-~~~~DlVittGG~s~g---------- 259 (402)
T 1uz5_A 207 INGRALCDAINELGGEGIF-----MGVARDD-----------KESLKALIEKA-VNVGDVVVISGGASGG---------- 259 (402)
T ss_dssp CHHHHHHHHHHHHTSEEEE-----EEEECSS-----------HHHHHHHHHHH-HHHCSEEEEECCC-------------
T ss_pred chHHHHHHHHHhCCCeEEE-----EEEeCCC-----------HHHHHHHHHHH-hhCCCEEEEcCCCCCC----------
Confidence 3777888999999987654 2233222 34455555432 3335677888844433
Q ss_pred CCCChhHHHHHHHHcCCceEEEe
Q 012808 284 RGGSDLTATTIGKALGLQEIQVW 306 (456)
Q Consensus 284 RGGSD~tAa~lA~~L~A~~l~i~ 306 (456)
.-|++-..++.. | ++.+|
T Consensus 260 --~~D~t~~al~~~-G--~~~f~ 277 (402)
T 1uz5_A 260 --TKDLTASVIEEL-G--EVKVH 277 (402)
T ss_dssp ----CHHHHHHHHH-S--EEEEE
T ss_pred --CcccHHHHHHhh-C--CEEEe
Confidence 269999998876 6 78887
No 97
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=21.75 E-value=1e+02 Score=26.69 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=32.2
Q ss_pred EEeecCCccccCCCCCC-CCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCC
Q 012808 304 QVWKDVDGVLTCDPNIH-PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366 (456)
Q Consensus 304 ~i~TDV~GV~taDP~~v-~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~ 366 (456)
.+.+|+||+++..-..+ ++.+.+...+..+. .+++.+++.|+++.|.++.
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~-------------~~L~~Lk~~Gi~~~I~Tg~ 61 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVKDA-------------IGISLLKKSGIEVRLISER 61 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHHHH-------------HHHHHHHHTTCEEEEECSS
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecCcH-------------HHHHHHHHCCCEEEEEeCc
Confidence 57889999998543222 22333333333332 3788889999999888755
No 98
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=20.93 E-value=1.5e+02 Score=25.67 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhcccc-CCceEEEcCCCcCCCCCCceeecc
Q 012808 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTLG 283 (456)
Q Consensus 205 sa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~-~~~VpVv~Gfig~~~~~G~vttlg 283 (456)
|+..+++.|++.|+.... .+++- | + +.+.+.+.+. ++ ...+.|++|-.+.+
T Consensus 28 n~~~l~~~l~~~G~~v~~-----~~iv~-D----------d-~~i~~al~~a-~~~~~DlVittGG~s~g---------- 79 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQ-----PEVVA-D----------G-SPVGEALRKA-IDDDVDVILTSGGTGIA---------- 79 (164)
T ss_dssp HHHHHHHHHHHTTCEECC-----CEEEC-S----------S-HHHHHHHHHH-HHTTCSEEEEESCCSSS----------
T ss_pred HHHHHHHHHHHCCCEEEE-----EEEeC-C----------H-HHHHHHHHHH-HhCCCCEEEECCCCCCC----------
Confidence 667788899999986532 22321 2 2 3355555442 33 45688888855543
Q ss_pred CCCChhHHHHHHHHcC
Q 012808 284 RGGSDLTATTIGKALG 299 (456)
Q Consensus 284 RGGSD~tAa~lA~~L~ 299 (456)
.-|++.-.++..++
T Consensus 80 --~~D~t~eal~~~~~ 93 (164)
T 3pzy_A 80 --PTDSTPDQTVAVVD 93 (164)
T ss_dssp --TTCCHHHHHHTTCS
T ss_pred --CCccHHHHHHHHhc
Confidence 26888888887766
No 99
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=20.50 E-value=88 Score=31.76 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=26.7
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEE-EeCCCEEEEEE
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVV-ATSEVSLSLTL 440 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~I-stSe~sIsi~V 440 (456)
.+.||++++|-++|+++||||.-. ..|.-.+..++
T Consensus 351 ~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~ 386 (416)
T 3k5p_A 351 ENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLV 386 (416)
T ss_dssp CCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEE
T ss_pred cCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEE
Confidence 578999999999999999999765 44443444444
No 100
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=20.43 E-value=1.4e+02 Score=30.47 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.4
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEEeC
Q 012808 406 LGQYGFLAKVFSTFEDLGISVDVVATS 432 (456)
Q Consensus 406 ~~~~g~~akif~~L~~~gI~V~~IstS 432 (456)
.+.||++++|-.+|+++||+++.+-+.
T Consensus 367 ~d~~gvl~~i~~~~~~~~isi~~~~q~ 393 (444)
T 3mtj_A 367 FDRPGVLADITRILADSSISIDAMVQK 393 (444)
T ss_dssp C-CCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCcccHHHHHHHHHHhcCCceeEEeec
Confidence 468999999999999999999998653
Done!