BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012810
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
pdb|2W2H|B Chain B, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
Length = 264
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 155/253 (61%), Gaps = 13/253 (5%)
Query: 31 DGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFC 90
+ RWYF+R++LE +SPSRR G+D +E R+ LQD+G +L V Q+TI TAI++
Sbjct: 5 NNKRWYFTREQLE-NSPSRRFGLDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYM 63
Query: 91 HRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIK 150
HRFY+ QS T+ R +VA +FLA KVEE P+ L+ VI V++ +H ++ PD+
Sbjct: 64 HRFYMIQSFTRFHRNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDT----- 118
Query: 151 QKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVND 210
+ E Y QQ + +++ E ++L TL F+L + HP+ +V+ + + +++ LAQ ++ +
Sbjct: 119 RSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATN 177
Query: 211 GLR-TSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGD-RMWWQEFD--VTPRQLEEVSNQ 266
L T+ LQ+ P VA I LA K+ ++P D + WW+ D VT L+E++++
Sbjct: 178 SLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHE 237
Query: 267 MLELYEQ--NRVQ 277
L++ E+ NR++
Sbjct: 238 FLQILEKTPNRLK 250
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|B Chain B, Structure Of Cdk9CYCLIN T F241L
Length = 259
Score = 161 bits (407), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 155/254 (61%), Gaps = 13/254 (5%)
Query: 30 KDGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIF 89
+ RWYF+R++LE +SPSRR G+D +E R+ LQD+G +L V Q+TI TAI++
Sbjct: 7 NNNKRWYFTREQLE-NSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVY 65
Query: 90 CHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRI 149
HRFY+ QS T+ +VA +FLA KVEE P+ L+ VI V++ +H ++ PD+
Sbjct: 66 MHRFYMIQSFTQFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDT---- 121
Query: 150 KQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVN 209
+ E Y QQ + +++ E ++L TL F+L + HP+ +V+ + + +++ LAQ ++
Sbjct: 122 -RSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMAT 179
Query: 210 DGLR-TSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGD-RMWWQEFD--VTPRQLEEVSN 265
+ L T+ LQ+ P VA I LA K+ ++P D + WW+ D VT L+E+++
Sbjct: 180 NSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTH 239
Query: 266 QMLELYEQ--NRVQ 277
++L++ E+ NR++
Sbjct: 240 ELLQILEKTPNRLK 253
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|B Chain B, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|C Chain C, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|D Chain D, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
Length = 358
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 154/253 (60%), Gaps = 13/253 (5%)
Query: 31 DGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFC 90
+ RWYF+R++LE +SPSRR G+D +E R+ LQD+G +L V Q+TI TAI++
Sbjct: 8 NNKRWYFTREQLE-NSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYM 66
Query: 91 HRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIK 150
HRFY+ QS T+ +VA +FLA KVEE P+ L+ VI V++ +H ++ PD+
Sbjct: 67 HRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDT----- 121
Query: 151 QKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVND 210
+ E Y QQ + +++ E ++L TL F+L + HP+ +V+ + + +++ LAQ ++ +
Sbjct: 122 RSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATN 180
Query: 211 GLR-TSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGD-RMWWQEFD--VTPRQLEEVSNQ 266
L T+ LQ+ P VA I LA K+ ++P D + WW+ D VT L+E++++
Sbjct: 181 SLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHE 240
Query: 267 MLELYEQ--NRVQ 277
L++ E+ NR++
Sbjct: 241 FLQILEKTPNRLK 253
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 266
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 154/253 (60%), Gaps = 13/253 (5%)
Query: 31 DGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFC 90
+ RWYF+R++LE +SPSRR G+D +E R+ LQD+G +L V Q+TI TAI++
Sbjct: 8 NNKRWYFTREQLE-NSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYM 66
Query: 91 HRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIK 150
HRFY+ QS T+ +VA +FLA KVEE P+ L+ VI V++ +H ++ PD+
Sbjct: 67 HRFYMIQSFTQFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDT----- 121
Query: 151 QKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVND 210
+ E Y QQ + +++ E ++L TL F+L + HP+ +V+ + + +++ LAQ ++ +
Sbjct: 122 RSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATN 180
Query: 211 GLR-TSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGD-RMWWQEFD--VTPRQLEEVSNQ 266
L T+ LQ+ P VA I LA K+ ++P D + WW+ D VT L+E++++
Sbjct: 181 SLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHE 240
Query: 267 MLELYEQ--NRVQ 277
L++ E+ NR++
Sbjct: 241 FLQILEKTPNRLK 253
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|B Chain B, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|B Chain B, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|4EC8|B Chain B, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|B Chain B, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
pdb|4BCF|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCH|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 260
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 154/254 (60%), Gaps = 13/254 (5%)
Query: 30 KDGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIF 89
+ RWYF+R++LE +SPSRR G+D +E R+ LQD+G +L V Q+TI TAI++
Sbjct: 8 NNNKRWYFTREQLE-NSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVY 66
Query: 90 CHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRI 149
HRFY+ QS T+ +VA +FLA KVE P+ L+ VI V++ +H ++ PD+
Sbjct: 67 MHRFYMIQSFTRFPGNSVAPAALFLAAKVEGQPKKLEHVIKVAHTCLHPQESLPDT---- 122
Query: 150 KQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVN 209
+ E Y QQ + +++ E ++L TL F+L + HP+ +V+ + + +++ LAQ ++
Sbjct: 123 -RSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMAT 180
Query: 210 DGLR-TSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGD-RMWWQEFD--VTPRQLEEVSN 265
+ L T+ LQ+ P VA I LA K+ ++P D + WW+ D VT L+E+++
Sbjct: 181 NSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTH 240
Query: 266 QMLELYEQ--NRVQ 277
++L++ E+ NR++
Sbjct: 241 ELLQILEKTPNRLK 254
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 145/255 (56%), Gaps = 20/255 (7%)
Query: 35 WYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFY 94
WY+ +K+L +PS+ +G+D E R+ F+ D+G +L + T+AT II+ HRFY
Sbjct: 15 WYWDKKDLAH-TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFY 73
Query: 95 LRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEV 154
+ S + R C+FLAGKVEETP+ KD+I + +++ ++ +
Sbjct: 74 MFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLND----------VQFGQF 123
Query: 155 YEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQN---ALAQVAWNFVNDG 211
+ KE +++ ER++L T+ FDL V HPY+ L++ K+ K +N L Q+AW FVND
Sbjct: 124 GDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDS 183
Query: 212 LRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGD----RMWWQEF--DVTPRQLEEVSN 265
L T+L LQ++P +A ++LA + K ++ R WW++F DV LE++ +
Sbjct: 184 LCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICH 243
Query: 266 QMLELYEQNRVQPSH 280
Q+L+LY Q + Q H
Sbjct: 244 QILDLYSQGKQQMPH 258
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution
(Casp Target)
pdb|2IVX|B Chain B, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution
(Casp Target)
Length = 257
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 153/252 (60%), Gaps = 13/252 (5%)
Query: 32 GGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCH 91
RW+F+R++LE ++PSRR G++ +E R+ +Q++G +L V Q+TI TAI++ H
Sbjct: 2 SSRWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMH 60
Query: 92 RFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQ 151
RFY+ S TK ++ +++ +FLA KVEE R L+ VI V++ +H + D+ K
Sbjct: 61 RFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDT----KC 116
Query: 152 KEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDG 211
+Q +EL++L E ++L TL F++ + HP+ +V+ + + +++ LAQ ++ +
Sbjct: 117 DAYLQQTRELVIL-ETIMLQTLGFEITIEHPHTDVVKCTQLVRASKD-LAQTSYFMATNS 174
Query: 212 LR-TSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGD-RMWWQEFD--VTPRQLEEVSNQM 267
L T+ CLQ+KP +A I LA K+ ++P D + WW+ D VT L+E++++
Sbjct: 175 LHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEF 234
Query: 268 LELYEQ--NRVQ 277
L++ E+ NR++
Sbjct: 235 LQILEKTPNRLK 246
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC
Length = 285
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 114/248 (45%), Gaps = 28/248 (11%)
Query: 34 RWYFSRKELEEDSPSRRDGIDLKRETY--LRKSYCTFLQDLGMKLKVPQITIATAIIFCH 91
+W +++L ++ ++D L E Y L+ + +Q LG LK+ Q IATA ++
Sbjct: 15 QWILDKQDLLKER--QKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFK 72
Query: 92 RFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQ 151
RFY R S D +A C+FLA KVEE + ++ + +K
Sbjct: 73 RFYARYSLKSIDPVLMAPTCVFLASKVEE------------FGVVSNTRLIAAATSVLKT 120
Query: 152 KEVYEQQKEL------ILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAW 205
+ Y KE IL E +L + L V HPY+PL++ ++ ++ L +AW
Sbjct: 121 RFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMG-QEDMLLPLAW 179
Query: 206 NFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSN 265
VND RT LCL + P +A + +A + R W+ E V ++ E+
Sbjct: 180 RIVNDTYRTDLCLLYPPFMIALACLHVAC-----VVQQKDARQWFAELSVDMEKILEIIR 234
Query: 266 QMLELYEQ 273
+L+LYEQ
Sbjct: 235 VILKLYEQ 242
>pdb|1ZP2|A Chain A, Structure Of The Mediator Subunit Cyclin C
Length = 235
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 69 LQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKN-DRRTVATVCMFLAGKVEETPRPLKD 127
+Q G +L++ Q +ATAI+ R+ L+++ K + C++L+ KVEE P ++
Sbjct: 35 VQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRT 94
Query: 128 VIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLV 187
+ + + ++ +K K E+ E +++ L L V HPY L
Sbjct: 95 IC-----------NEANDLWSLKVKLSRSNISEI----EFEIISVLDAFLIVHHPYTSLE 139
Query: 188 EAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAA 234
+A + Q L + AW+ VND +SLCL PH +A A+ ++
Sbjct: 140 QAFHDGIINQKQL-EFAWSIVNDSYASSLCLMAHPHQLAYAALLISC 185
>pdb|1KXU|A Chain A, Cyclin H, A Positive Regulatory Subunit Of Cdk Activating
Kinase
Length = 333
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 78 VPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIH 137
+P+ + TA ++ RFYL S + R + C FLA KV+E + S + +
Sbjct: 85 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE-------FNVSSPQFVG 137
Query: 138 KKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKP----LVEAIKKF 193
+ P + Q++ EQ IL E +++ L F L V +PY+P L++ ++
Sbjct: 138 NLRESP-----LGQEKALEQ----ILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRY 188
Query: 194 KVAQN--ALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAA 234
+ +N L + A +F+N T L + P +A AI +A
Sbjct: 189 PILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSA 231
>pdb|1JKW|A Chain A, Structure Of Cyclin Mcs2
Length = 323
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 78 VPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIH 137
+P+ + TA ++ RFYL S + R + C FLA KV+E + S + +
Sbjct: 75 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE-------FNVSSPQFVG 127
Query: 138 KKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKP----LVEAIKKF 193
+ P + Q++ EQ IL E +++ L F L V +PY+P L++ ++
Sbjct: 128 NLRESP-----LGQEKALEQ----ILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRY 178
Query: 194 KVAQN--ALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAA 234
+ +N L + A +F+N T L + P +A AI +A
Sbjct: 179 PILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSA 221
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 83/221 (37%), Gaps = 37/221 (16%)
Query: 22 SEFSQDMPKDGGRWYFSRKELEEDSPSRRDGIDLKRETY--LRKSYCTFLQDLGMKLKVP 79
SE+ +D+ Y ++LEE+ R + L RE +R +L + MK ++
Sbjct: 2 SEYVKDI-------YAYLRQLEEEQAVRPKYL-LGREVTGNMRAILIDWLVQVQMKFRLL 53
Query: 80 QITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEET-PRPLKDVIIVSYEIIHK 138
Q T+ + RF K + V MF+A K EE P + D V+
Sbjct: 54 QETMYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVT------ 107
Query: 139 KDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEA--IKKFKVA 196
D+ Y Q E + +L L F L P L A I + V
Sbjct: 108 -----DNTYTKHQIRQMEMK----------ILRALNFGLGRPLPLHFLRRASKIGEVDVE 152
Query: 197 QNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFL 237
Q+ LA+ + + F P +AAGA LA K L
Sbjct: 153 QHTLAKYLMELT---MLDYDMVHFPPSQIAAGAFCLALKIL 190
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 51 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 109
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 110 EFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPT 143
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 66/180 (36%), Gaps = 27/180 (15%)
Query: 61 LRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEE 120
+R +L + MK ++ Q T+ + RF S K + V MF+A K EE
Sbjct: 37 MRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEE 96
Query: 121 T-PRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNV 179
P + D V+ D+ Y Q E + +L L F L
Sbjct: 97 MYPPEIGDFAFVT-----------DNTYTKHQIRQMEMK----------ILRALNFGLGR 135
Query: 180 LHPYKPLVEA--IKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFL 237
P L A I + V Q+ LA+ + + F P +AAGA LA K L
Sbjct: 136 PLPLHFLRRASKIGEVDVEQHTLAKYLMELT---MLDYDMVHFPPSQIAAGAFSLALKIL 192
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 45 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 103
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 104 EFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPT 137
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 44 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 102
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 103 EFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPT 136
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 47 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 105
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 106 EFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPT 139
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 48 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 106
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 107 EFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPT 140
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 46 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 104
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 105 EFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPT 138
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 42 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 100
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 101 EFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPT 134
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 46 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 104
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 105 EFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPT 138
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 48 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 106
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 107 EFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPT 140
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 44 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 102
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 103 EFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPT 136
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 48 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 106
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 107 EFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPT 140
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 48 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 106
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 107 EFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPT 140
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 48 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 106
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 107 EFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPT 140
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 48 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 106
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 107 EFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPT 140
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 48 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 106
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 107 EFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPT 140
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 48 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 106
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 107 EFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPT 140
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 48 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 106
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + T +Q+ + + +L++ + P+
Sbjct: 107 EFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPT 140
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 47 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 105
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + + +Q+ + + +L++ + P+
Sbjct: 106 EFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPT 139
>pdb|4GF5|A Chain A, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|C Chain C, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|E Chain E, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|F Chain F, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|H Chain H, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|B Chain B, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|D Chain D, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|G Chain G, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|I Chain I, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|J Chain J, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|K Chain K, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|L Chain L, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|M Chain M, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|N Chain N, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|O Chain O, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|P Chain P, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|Q Chain Q, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|R Chain R, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|S Chain S, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
pdb|4GF5|T Chain T, Crystal Structure Of Calicheamicin Methyltransferase,
Cals11
Length = 257
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 167 RVVLATLAFDLNVLHPYKPLVEAIKKFK-----VAQNALAQVAWNFVNDGLRTSLCLQFK 221
+ V+A FDL++ P K ++EAI+ + VA + L W N +R L L
Sbjct: 180 QTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAMRKVLGLDHA 239
Query: 222 PHHVAAG 228
P + G
Sbjct: 240 PLRLLPG 246
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 44 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 102
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + + +Q+ + + +L++ + P+
Sbjct: 103 EFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPT 136
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 186 LVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245
LVE +++K+ QN +A N+++ L + L+ K V A+ LA+KF ++ P
Sbjct: 44 LVEVGEEYKL-QNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA 102
Query: 246 DRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPS 279
+ ++ + + +Q+ + + +L++ + P+
Sbjct: 103 EFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPT 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,743,598
Number of Sequences: 62578
Number of extensions: 494462
Number of successful extensions: 991
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 38
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)