Query 012810
Match_columns 456
No_of_seqs 243 out of 1683
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:40:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 100.0 7.2E-47 2.5E-51 369.0 26.4 237 32-275 2-242 (257)
2 2i53_A Cyclin K; cell cycle, t 100.0 4.5E-46 1.5E-50 363.0 23.9 240 24-278 4-256 (258)
3 3rgf_B Cyclin-C; protein kinas 100.0 1.9E-45 6.5E-50 365.3 17.6 231 33-276 14-245 (285)
4 2pk2_A Cyclin-T1, protein TAT; 100.0 3.2E-45 1.1E-49 374.8 18.3 239 31-276 8-250 (358)
5 1zp2_A RNA polymerase II holoe 100.0 5.6E-42 1.9E-46 330.7 11.7 216 33-277 8-224 (235)
6 1jkw_A Cyclin H; cell cycle, c 100.0 2.2E-39 7.4E-44 327.3 23.5 223 33-276 9-264 (323)
7 3g33_B CCND3 protein; Ser/Thr 100.0 2.5E-35 8.5E-40 295.6 13.9 207 46-275 55-269 (306)
8 2cch_B Cyclin A2, cyclin-A; co 100.0 3.4E-33 1.2E-37 273.2 14.7 194 56-277 33-232 (260)
9 2w96_A G1/S-specific cyclin-D1 100.0 3.6E-33 1.2E-37 274.7 14.0 203 52-277 47-261 (271)
10 2b9r_A Human cyclin B1; cell c 100.0 8.1E-33 2.8E-37 272.2 15.9 200 46-276 24-228 (269)
11 1g3n_C V-cyclin; cyclin-depend 100.0 2.9E-32 9.8E-37 266.3 16.1 201 53-275 42-250 (257)
12 1c9b_A General transcription f 100.0 7.7E-32 2.6E-36 254.7 16.9 186 62-274 5-190 (207)
13 2f2c_A Cyclin homolog, V-cycli 100.0 6.4E-32 2.2E-36 263.4 15.3 197 51-274 41-249 (254)
14 1w98_B Cyclin E, G1/S-specific 100.0 6.9E-29 2.4E-33 246.0 14.7 188 56-274 44-243 (283)
15 1f5q_B Gamma herpesvirus cycli 100.0 1.4E-28 4.7E-33 240.5 15.7 197 52-274 39-243 (252)
16 1ais_B TFB TFIIB, protein (tra 99.9 8.5E-27 2.9E-31 218.9 18.6 185 62-273 9-195 (200)
17 3k7a_M Transcription initiatio 99.9 2.2E-25 7.5E-30 226.8 4.8 183 63-272 127-321 (345)
18 4bbr_M Transcription initiatio 99.8 5.3E-19 1.8E-23 179.9 10.1 183 63-272 127-321 (345)
19 1ais_B TFB TFIIB, protein (tra 97.7 0.00011 3.9E-09 68.0 8.4 67 66-132 109-175 (200)
20 2pmi_B PHO85 cyclin PHO80, ami 97.3 0.00094 3.2E-08 66.0 10.5 94 65-181 77-174 (293)
21 1c9b_A General transcription f 97.1 0.0013 4.5E-08 61.1 8.6 67 66-132 103-169 (207)
22 3k7a_M Transcription initiatio 94.9 0.0043 1.5E-07 62.6 0.0 67 66-132 236-302 (345)
23 4bbr_M Transcription initiatio 94.9 0.059 2E-06 54.4 8.1 91 179-273 126-216 (345)
24 1zp2_A RNA polymerase II holoe 94.4 0.14 4.7E-06 48.3 9.1 92 183-275 32-129 (235)
25 2b9r_A Human cyclin B1; cell c 93.7 0.2 7E-06 48.3 8.9 94 184-278 43-136 (269)
26 3rgf_B Cyclin-C; protein kinas 93.4 0.27 9.1E-06 48.0 9.2 92 183-275 47-152 (285)
27 2f2c_A Cyclin homolog, V-cycli 93.1 0.32 1.1E-05 46.4 9.1 93 184-277 57-149 (254)
28 1g3n_C V-cyclin; cyclin-depend 92.7 0.27 9.2E-06 47.0 8.0 93 184-277 56-148 (257)
29 3g33_B CCND3 protein; Ser/Thr 92.5 0.36 1.2E-05 47.6 8.7 94 184-278 76-169 (306)
30 2w96_A G1/S-specific cyclin-D1 92.3 0.41 1.4E-05 46.0 8.7 93 184-277 62-154 (271)
31 2cch_B Cyclin A2, cyclin-A; co 92.2 0.27 9.2E-06 47.1 7.2 93 184-277 44-136 (260)
32 1jkw_A Cyclin H; cell cycle, c 92.1 0.71 2.4E-05 45.8 10.3 88 184-275 62-158 (323)
33 1w98_B Cyclin E, G1/S-specific 91.5 0.51 1.7E-05 45.9 8.3 94 184-278 55-149 (283)
34 2i53_A Cyclin K; cell cycle, t 90.7 0.38 1.3E-05 45.7 6.5 56 66-121 152-211 (258)
35 2ivx_A Cyclin-T2; transcriptio 90.6 0.61 2.1E-05 44.3 7.8 56 183-239 35-90 (257)
36 3h4c_A Transcription factor TF 90.5 8.5 0.00029 36.1 14.9 65 65-129 15-82 (260)
37 1f5q_B Gamma herpesvirus cycli 89.3 0.81 2.8E-05 43.9 7.5 95 184-279 54-148 (252)
38 2pk2_A Cyclin-T1, protein TAT; 89.0 0.71 2.4E-05 46.6 7.2 57 183-240 42-98 (358)
39 3m03_A ORC6, origin recognitio 82.9 1.6 5.4E-05 36.0 4.9 54 69-123 6-64 (95)
40 3m03_A ORC6, origin recognitio 75.6 9.1 0.00031 31.5 7.2 53 218-273 41-93 (95)
41 2r7g_A PP110, retinoblastoma-a 70.4 26 0.00089 35.2 10.7 83 158-240 167-278 (347)
42 2qdj_A Retinoblastoma-associat 65.1 13 0.00043 36.8 7.1 64 69-132 6-73 (304)
43 4ell_A Retinoblastoma-associat 64.9 20 0.00069 36.8 8.7 66 65-131 282-351 (411)
44 2r7g_A PP110, retinoblastoma-a 58.6 25 0.00085 35.3 7.9 76 56-131 206-287 (347)
45 2pmi_B PHO85 cyclin PHO80, ami 50.6 51 0.0018 32.3 8.5 89 183-274 78-169 (293)
46 4elj_A Retinoblastoma-associat 45.9 61 0.0021 35.2 9.0 67 65-131 527-596 (656)
47 4ell_A Retinoblastoma-associat 34.9 53 0.0018 33.7 6.0 53 188-240 288-342 (411)
48 4elj_A Retinoblastoma-associat 31.2 79 0.0027 34.4 6.9 63 69-132 8-75 (656)
49 4a69_A Histone deacetylase 3,; 30.7 2.1E+02 0.0072 28.8 9.7 105 168-279 251-374 (376)
50 3h4c_A Transcription factor TF 21.2 64 0.0022 30.2 3.4 24 220-243 55-78 (260)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=7.2e-47 Score=368.97 Aligned_cols=237 Identities=33% Similarity=0.643 Sum_probs=215.2
Q ss_pred CCCccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHH
Q 012810 32 GGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVC 111 (456)
Q Consensus 32 ~~~W~Ft~eel~~~sPSr~dGis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaAC 111 (456)
.++||||++|| +++||+.+|++++.|..+|..+++||.++|.+|+||+.|+++|++||||||.++++.++++++||+||
T Consensus 2 ~~~w~~t~e~l-~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac 80 (257)
T 2ivx_A 2 SSRWFFTREQL-ENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTA 80 (257)
T ss_dssp CGGGSCCHHHH-HSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred CCCeeecHHHH-HhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHH
Confidence 36799999999 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCchhHHHHHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHH
Q 012810 112 MFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIK 191 (456)
Q Consensus 112 LfLA~KvEE~~rkL~dvi~v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~ 191 (456)
||||||+||.++++++++.+++.+.++. .|.. ...++.|...+++|+.||+.||++|+|+|.++||+.||.+|++
T Consensus 81 L~lA~K~EE~p~~l~d~~~~~~~~~~~~--~~~~---~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~ 155 (257)
T 2ivx_A 81 LFLAAKVEEQARKLEHVIKVAHACLHPL--EPLL---DTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQ 155 (257)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCTT--SCCC---CTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHHHhccccCCcCHHHHHHHHHHHhccC--CCCC---CcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHH
Confidence 9999999999999999999988877654 2211 0124568878999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHhhhhc-ccccccCcCHHHHHHHHHHHHHHHcCCCCCCC-Ccccchhcc--CCCHHHHHHHHHHH
Q 012810 192 KFKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSD-GDRMWWQEF--DVTPRQLEEVSNQM 267 (456)
Q Consensus 192 ~l~~~~~~I~q~A~~~lnDsl-~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~-~~~~W~~~f--~vt~eeL~ei~~~I 267 (456)
.++.+. .+.+.||+++++++ .+++|+.|+|+.||+||||+|+..+|.++|.. ++..||..| ++++++|.+|+++|
T Consensus 156 ~l~~~~-~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i 234 (257)
T 2ivx_A 156 LVRASK-DLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEF 234 (257)
T ss_dssp HTTCCH-HHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHH
T ss_pred HhCCCc-HHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHH
Confidence 998764 78899999999998 48899999999999999999999999988864 346899988 79999999999999
Q ss_pred HHHHhhCC
Q 012810 268 LELYEQNR 275 (456)
Q Consensus 268 l~lY~~~~ 275 (456)
+++|+..+
T Consensus 235 ~~~~~~~~ 242 (257)
T 2ivx_A 235 LQILEKTP 242 (257)
T ss_dssp HHHHHTSH
T ss_pred HHHHHhCh
Confidence 99998653
No 2
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=4.5e-46 Score=362.96 Aligned_cols=240 Identities=37% Similarity=0.679 Sum_probs=213.9
Q ss_pred ccCCCCCCCCCccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcc
Q 012810 24 FSQDMPKDGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKND 103 (456)
Q Consensus 24 ~~~~~~~~~~~W~Ft~eel~~~sPSr~dGis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d 103 (456)
++...-....+|||+++||. ++||+.+|++++.|..+|..+++||.++|.+|+|++.|+++|++||||||.++++.+++
T Consensus 4 ~~~~~~~~~~~w~~~~~el~-~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~ 82 (258)
T 2i53_A 4 TSANLDHTKPCWYWDKKDLA-HTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFP 82 (258)
T ss_dssp -CCSCSSCSSSCCCCGGGGG-GCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC
T ss_pred chhhhhhhccCCccCHHHHH-hCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcC
Confidence 34444456688999999994 78999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccCCCCCchhHHHHHHHHhhcCCCCCchhhhhhhhHHH----HHHHHHHHHHHHHHHHhcCCcccc
Q 012810 104 RRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVY----EQQKELILLGERVVLATLAFDLNV 179 (456)
Q Consensus 104 ~~lVaaACLfLA~KvEE~~rkL~dvi~v~~~i~~k~~~dP~~~~~i~~~e~y----~~~ke~Il~~E~~IL~~L~FdL~V 179 (456)
+++||+||||||||+||+++++++++.+++.++... .| +..+++|+.||+.||++|+|+|.+
T Consensus 83 ~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~--------------~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~ 148 (258)
T 2i53_A 83 RYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDV--------------QFGQFGDDPKEEVMVLERILLQTIKFDLQV 148 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHH--------------HHGGGCSCHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHccccccccHHHHHHHHHHHhchh--------------hhhhhhhhHHHHHHHHHHHHHHHCCCceec
Confidence 999999999999999999999999998876544211 11 124678999999999999999999
Q ss_pred CCcHHHHHHHHHHhhhchH---HHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCC----Ccccchhc
Q 012810 180 LHPYKPLVEAIKKFKVAQN---ALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSD----GDRMWWQE 252 (456)
Q Consensus 180 ~~P~~~L~~~l~~l~~~~~---~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~----~~~~W~~~ 252 (456)
++|+.||.+|++.++.+.+ .+.+.||+++++++++++|+.|+|+.||+||||+|+++++.++|.. ....||..
T Consensus 149 ~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~ 228 (258)
T 2i53_A 149 EHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQ 228 (258)
T ss_dssp CCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGG
T ss_pred cChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHH
Confidence 9999999999999987653 6889999999999999999999999999999999999999887642 24579999
Q ss_pred c--CCCHHHHHHHHHHHHHHHhhCCCCC
Q 012810 253 F--DVTPRQLEEVSNQMLELYEQNRVQP 278 (456)
Q Consensus 253 f--~vt~eeL~ei~~~Il~lY~~~~~~~ 278 (456)
| |+++++|.+|+.+|+++|...+...
T Consensus 229 ~~~~~~~~~l~~~~~~il~ly~~~~~~~ 256 (258)
T 2i53_A 229 FVQDVPVDVLEDICHQILDLYSQGKQQM 256 (258)
T ss_dssp TSSSCCHHHHHHHHHHHHTTTSSSCCCC
T ss_pred hccCCCHHHHHHHHHHHHHHHhcccccC
Confidence 8 9999999999999999999877654
No 3
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=365.31 Aligned_cols=231 Identities=28% Similarity=0.443 Sum_probs=205.2
Q ss_pred CCccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHH
Q 012810 33 GRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCM 112 (456)
Q Consensus 33 ~~W~Ft~eel~~~sPSr~dGis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACL 112 (456)
.+||||++||...+++..+|++.++|..+|..+++||.++|.+|+||+.|++||++||||||.++++.++++++|++|||
T Consensus 14 ~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acL 93 (285)
T 3rgf_B 14 LQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCV 93 (285)
T ss_dssp HHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHH
T ss_pred CCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHH
Confidence 57999999998776668899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCC-CchhHHHHHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHH
Q 012810 113 FLAGKVEETPR-PLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIK 191 (456)
Q Consensus 113 fLA~KvEE~~r-kL~dvi~v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~ 191 (456)
|||||+||+++ .+++|+.++..+..... .. + .++.|...+++|+.||+.||++|+|+|.++|||+||.+|++
T Consensus 94 fLA~K~EE~~~~~~~di~~~~~~~~k~~~--~~----~-~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~ 166 (285)
T 3rgf_B 94 FLASKVEEFGVVSNTRLIAAATSVLKTRF--SY----A-FPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQ 166 (285)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHHHHHC--TT----T-CCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHH
T ss_pred HHHHhhhccccccHHHHHHHHHHHHcccc--cc----c-CchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHH
Confidence 99999999998 47899988766543210 00 0 01112234678999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHHHHHHHHHH
Q 012810 192 KFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELY 271 (456)
Q Consensus 192 ~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei~~~Il~lY 271 (456)
.++.+ ..+.+.||.|++|++.+++|+.|+|+.||+||||+|+.+++.+. ..||..|++++++|.+|+.+|+++|
T Consensus 167 ~l~~~-~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~-----~~W~~~~~~~~~~l~~~~~~il~ly 240 (285)
T 3rgf_B 167 DMGQE-DMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA-----RQWFAELSVDMEKILEIIRVILKLY 240 (285)
T ss_dssp HHTCH-HHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC-----HHHHHTSCSCHHHHHHHHHHHHHHH
T ss_pred HhCCC-HHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh-----hhHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99875 47899999999999999999999999999999999999998753 5799999999999999999999999
Q ss_pred hhCCC
Q 012810 272 EQNRV 276 (456)
Q Consensus 272 ~~~~~ 276 (456)
..++.
T Consensus 241 ~~~~~ 245 (285)
T 3rgf_B 241 EQWKN 245 (285)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 98765
No 4
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=3.2e-45 Score=374.77 Aligned_cols=239 Identities=36% Similarity=0.626 Sum_probs=215.8
Q ss_pred CCCCccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHH
Q 012810 31 DGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATV 110 (456)
Q Consensus 31 ~~~~W~Ft~eel~~~sPSr~dGis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaA 110 (456)
..++||||++||+ .+||+.+||+.+.|..+|..+++||.+++.+|+|++.|+++|++||||||.++++.++++++|++|
T Consensus 8 ~~~~wlft~eeL~-~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~a 86 (358)
T 2pk2_A 8 NNKRWYFTREQLE-NSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPA 86 (358)
T ss_dssp CCSSSSCCSHHHH-TCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHH
T ss_pred CCCCceeCHHHHH-hChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 3578999999995 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCchhHHHHHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHH
Q 012810 111 CMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAI 190 (456)
Q Consensus 111 CLfLA~KvEE~~rkL~dvi~v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l 190 (456)
|||||||+||.++++++|+.+++.+.++. .|.. ...+..|...+++|+.||+.||++|+|+|.++|||.||..|+
T Consensus 87 cLfLA~K~EE~p~~l~d~v~v~~~~~~~~--~~~~---~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~ 161 (358)
T 2pk2_A 87 ALFLAAKVEEQPKKLEHVIKVAHTCLHPQ--ESLP---DTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCT 161 (358)
T ss_dssp HHHHHHHHTTCCCCHHHHHTTHHHHHCSS--SCCC---CTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHH
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHhccc--cccc---cccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHH
Confidence 99999999999999999999988877654 2210 012456777788999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHhhhhc-ccccccCcCHHHHHHHHHHHHHHHcCCCCCCC-Ccccchhcc--CCCHHHHHHHHHH
Q 012810 191 KKFKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSD-GDRMWWQEF--DVTPRQLEEVSNQ 266 (456)
Q Consensus 191 ~~l~~~~~~I~q~A~~~lnDsl-~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~-~~~~W~~~f--~vt~eeL~ei~~~ 266 (456)
+.++.+. ++.+.||+|+++++ .+++|+.|+|+.||+||||+|+.++++++|.. .+..||..| ++++++|.+|+.+
T Consensus 162 ~~l~~~~-~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 162 QLVRASK-DLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHE 240 (358)
T ss_dssp HHTTCCH-HHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHH
T ss_pred HHcCCCH-HHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHH
Confidence 9998764 78899999999998 48899999999999999999999999988864 346899998 6899999999999
Q ss_pred HHHHHhhCCC
Q 012810 267 MLELYEQNRV 276 (456)
Q Consensus 267 Il~lY~~~~~ 276 (456)
|+++|+..+.
T Consensus 241 il~~y~~~~~ 250 (358)
T 2pk2_A 241 FLQILEKTPN 250 (358)
T ss_dssp HHHHTTTCTT
T ss_pred HHHHHHhCcc
Confidence 9999977654
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-42 Score=330.70 Aligned_cols=216 Identities=22% Similarity=0.334 Sum_probs=189.7
Q ss_pred CCccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCC-cchHHHHHHH
Q 012810 33 GRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTK-NDRRTVATVC 111 (456)
Q Consensus 33 ~~W~Ft~eel~~~sPSr~dGis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~-~d~~lVaaAC 111 (456)
++||||++||+. +|+..++ + |..+++||.++|.+|+||+.|+++|++||||||.++++++ +++++|++||
T Consensus 8 ~~w~ft~~~l~~-~~~~~~~-----~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~ac 78 (235)
T 1zp2_A 8 TQLFLSTDLESL-EPTCLSK-----D---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATC 78 (235)
T ss_dssp TGGGSCSSCTTS-SCCCSCH-----H---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHH
T ss_pred CCCccCHHHHHH-CCcchhH-----H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHH
Confidence 579999999964 4554432 2 9999999999999999999999999999999999999999 9999999999
Q ss_pred HHHhhcccCCCCCchhHHHHHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHH
Q 012810 112 MFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIK 191 (456)
Q Consensus 112 LfLA~KvEE~~rkL~dvi~v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~ 191 (456)
||||||+||+++++++++.+++++.... |...+++|+.+|+.||++|+|+|.+++|+.||.+|++
T Consensus 79 L~lA~K~Ee~~~~l~d~~~~~~~~~~~~---------------~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~ 143 (235)
T 1zp2_A 79 IYLSCKVEECPVHIRTICNEANDLWSLK---------------VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFH 143 (235)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHTTCCCS---------------SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHH
T ss_pred HHHHhccccCcccHHHHHHHHHHHccch---------------hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHH
Confidence 9999999999999999998876543110 1113568999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHHHHHHHHHH
Q 012810 192 KFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELY 271 (456)
Q Consensus 192 ~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei~~~Il~lY 271 (456)
.++.+. ++.+.||.++++++++++|+.|+|+.||+||||+|+.+++.++|. ...||. ++++++|.+|+.+|+++|
T Consensus 144 ~~~~~~-~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~--~~~~~~--~~~~~~i~~~~~~i~~ly 218 (235)
T 1zp2_A 144 DGIINQ-KQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPK--LLDLIK--STDAFKVILCVQRIISIY 218 (235)
T ss_dssp TTSSCH-HHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHH--HHHHCC--HHHHHHHHHHHHHHHHHH
T ss_pred HcCCCH-HHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCC--Ccchhh--cCCHHHHHHHHHHHHHHH
Confidence 988764 688999999999999999999999999999999999998876553 245776 999999999999999999
Q ss_pred hhCCCC
Q 012810 272 EQNRVQ 277 (456)
Q Consensus 272 ~~~~~~ 277 (456)
..++..
T Consensus 219 ~~~~~~ 224 (235)
T 1zp2_A 219 YFEDIE 224 (235)
T ss_dssp TSSSHH
T ss_pred hhCCcC
Confidence 886643
No 6
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=2.2e-39 Score=327.30 Aligned_cols=223 Identities=26% Similarity=0.354 Sum_probs=193.8
Q ss_pred CCccccH-HHHhhh------------------CCCccCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHH
Q 012810 33 GRWYFSR-KELEED------------------SPSRRDGIDLKRETYLRKSYCTFLQDLGMKLK--VPQITIATAIIFCH 91 (456)
Q Consensus 33 ~~W~Ft~-eel~~~------------------sPSr~dGis~e~E~~lR~~~~~~I~~l~~~Lk--Lp~~TiatAi~yf~ 91 (456)
..|+||+ ++|.+. .++..+|+++++|..+|..+++||.++|.+|+ ||+.|++||++|||
T Consensus 9 ~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~ 88 (323)
T 1jkw_A 9 RHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFK 88 (323)
T ss_dssp --CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5799996 777532 36788999999999999999999999999999 99999999999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHHhhcccCCCCCchhHHHHHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 012810 92 RFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLA 171 (456)
Q Consensus 92 RFy~~~s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi~v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~ 171 (456)
|||+++++.++++++||+||||||||+||+++++++++.++ +. +|. .+...+++|+.||+.||+
T Consensus 89 RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~-----~~--~p~---------~~~~~~~~Il~~E~~iL~ 152 (323)
T 1jkw_A 89 RFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNL-----RE--SPL---------GQEKALEQILEYELLLIQ 152 (323)
T ss_dssp HHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGS-----SS--CHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHh-----cc--Chh---------hhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987531 11 331 123467899999999999
Q ss_pred hcCCccccCCcHHHHHHHHHHhh-----h-chHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCC
Q 012810 172 TLAFDLNVLHPYKPLVEAIKKFK-----V-AQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDG 245 (456)
Q Consensus 172 ~L~FdL~V~~P~~~L~~~l~~l~-----~-~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~ 245 (456)
+|+|+|.++|||.||..|+..++ + ..+.+.+.||.|+++++.+++|+.|+|+.||+||||+|+..++.++|.
T Consensus 153 ~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~-- 230 (323)
T 1jkw_A 153 QLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMES-- 230 (323)
T ss_dssp HTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTT--
T ss_pred HCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHH--
Confidence 99999999999999999998763 2 234688999999999999999999999999999999999999987753
Q ss_pred cccchhc-cC-----CCHHHHHHHHHHHHHHHhhCCC
Q 012810 246 DRMWWQE-FD-----VTPRQLEEVSNQMLELYEQNRV 276 (456)
Q Consensus 246 ~~~W~~~-f~-----vt~eeL~ei~~~Il~lY~~~~~ 276 (456)
|+.. |+ ++.++|.+++.+|..+|.....
T Consensus 231 ---w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~ 264 (323)
T 1jkw_A 231 ---YLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEP 264 (323)
T ss_dssp ---HHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCC
T ss_pred ---HHHHHhccccccccHHHHHHHHHHHHHHHHccCC
Confidence 8874 33 4899999999999999998753
No 7
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=295.56 Aligned_cols=207 Identities=16% Similarity=0.189 Sum_probs=177.0
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCC-CCC
Q 012810 46 SPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEET-PRP 124 (456)
Q Consensus 46 sPSr~dGis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~-~rk 124 (456)
+|+..+++..+.+..+|..+++||.+++.+|+|++.|+++|++|||||+.++++...++++||+||||||||+||. +++
T Consensus 55 ~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~ 134 (306)
T 3g33_B 55 RASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLT 134 (306)
T ss_dssp SSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCC
T ss_pred CcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 3455677777778899999999999999999999999999999999999999999999999999999999999986 568
Q ss_pred chhHHHHHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHHHhhhchH---HHH
Q 012810 125 LKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQN---ALA 201 (456)
Q Consensus 125 L~dvi~v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~~l~~~~~---~I~ 201 (456)
+++++.++...+ .+++|+.||+.||++|+|+|.+++|+.||..|++.++...+ .+.
T Consensus 135 ~~~l~~~~~~~~---------------------~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~ 193 (306)
T 3g33_B 135 IEKLCIYTDHAV---------------------SPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVK 193 (306)
T ss_dssp TTHHHHHTTTSS---------------------CHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHH
T ss_pred HHHHHHHhccCc---------------------cHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHH
Confidence 888876543211 24679999999999999999999999999999999876532 366
Q ss_pred HHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhcc----CCCHHHHHHHHHHHHHHHhhCC
Q 012810 202 QVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEF----DVTPRQLEEVSNQMLELYEQNR 275 (456)
Q Consensus 202 q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f----~vt~eeL~ei~~~Il~lY~~~~ 275 (456)
+.|++|+++++.+..|+.|+|+.||+|||++|...++...+. ...|+..+ |+++++|.+|+..|+++|.+..
T Consensus 194 ~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w--~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 194 KHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMS--GDELTELLAGITGTEVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp HHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CC--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999853221 23455554 9999999999999999998743
No 8
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=3.4e-33 Score=273.25 Aligned_cols=194 Identities=22% Similarity=0.285 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCC-CCCchhHHHHHHH
Q 012810 56 KRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEET-PRPLKDVIIVSYE 134 (456)
Q Consensus 56 e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~-~rkL~dvi~v~~~ 134 (456)
+....+|..+++||.+++..|+++++|+++|++|||||+.+.++.+.+++++|+||||||||+||. ++++++++.++..
T Consensus 33 ~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~ 112 (260)
T 2cch_B 33 DITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDD 112 (260)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcC
Confidence 445679999999999999999999999999999999999999999999999999999999999998 8899999865421
Q ss_pred HhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHHHhhhchHHHHHHHHHHhhhhccc
Q 012810 135 IIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRT 214 (456)
Q Consensus 135 i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t 214 (456)
. | .+++|+.||+.||++|+|++.+++|+.||..|++.++.+...+.+.||+++++++.+
T Consensus 113 ~-------------------~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~ 171 (260)
T 2cch_B 113 T-------------------Y--TKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLID 171 (260)
T ss_dssp S-------------------S--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHC
T ss_pred C-------------------c--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Confidence 1 1 256799999999999999999999999999999999876557889999999999887
Q ss_pred cc-ccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhcc----CCCHHHHHHHHHHHHHHHhhCCCC
Q 012810 215 SL-CLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEF----DVTPRQLEEVSNQMLELYEQNRVQ 277 (456)
Q Consensus 215 ~l-~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f----~vt~eeL~ei~~~Il~lY~~~~~~ 277 (456)
.. ++.|+|+.||+||||+|+..++. +.|+..+ |+++++|.+|+..|.++|......
T Consensus 172 ~~~~~~~~Ps~iAaAai~lA~~~~~~-------~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~ 232 (260)
T 2cch_B 172 ADPYLKYLPSVIAGAAFHLALYTVTG-------QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQH 232 (260)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHS-------CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhCC-------CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCc
Confidence 77 99999999999999999999875 3588765 999999999999999999875543
No 9
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=3.6e-33 Score=274.66 Aligned_cols=203 Identities=21% Similarity=0.287 Sum_probs=173.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCC-CCCchhHHH
Q 012810 52 GIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEET-PRPLKDVII 130 (456)
Q Consensus 52 Gis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~-~rkL~dvi~ 130 (456)
+++.+....+|..+++||.+++.++++++.|+++|++|||||+.+.++.+.++++||+||||||||+||. |+++++++.
T Consensus 47 ~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~ 126 (271)
T 2w96_A 47 CVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCI 126 (271)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred hcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3444455689999999999999999999999999999999999999999999999999999999999998 889999876
Q ss_pred HHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHHHhhhchH---HHHHHHHHH
Q 012810 131 VSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQN---ALAQVAWNF 207 (456)
Q Consensus 131 v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~~l~~~~~---~I~q~A~~~ 207 (456)
++... | .+++|+.||+.||++|+|++.+++|+.||..|++.++.+.+ .+.+.|+.|
T Consensus 127 ~~~~~-------------------~--~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~ 185 (271)
T 2w96_A 127 YTDNS-------------------I--RPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTF 185 (271)
T ss_dssp HTTTS-------------------S--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HhcCC-------------------C--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 53211 1 25679999999999999999999999999999999887653 245689999
Q ss_pred hhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhc--------cCCCHHHHHHHHHHHHHHHhhCCCC
Q 012810 208 VNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQE--------FDVTPRQLEEVSNQMLELYEQNRVQ 277 (456)
Q Consensus 208 lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~--------f~vt~eeL~ei~~~Il~lY~~~~~~ 277 (456)
+++++.+..++.|+|+.||+||||+|+..++.+.+. ...|+.. .|+++++|.+|+++|.++|+.....
T Consensus 186 l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~--~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~~~ 261 (271)
T 2w96_A 186 VALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPN--NFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLRQ 261 (271)
T ss_dssp HHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTT--SCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCC--CCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888999999999999999999988753332 2346542 4999999999999999999876544
No 10
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=8.1e-33 Score=272.18 Aligned_cols=200 Identities=25% Similarity=0.262 Sum_probs=176.3
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCC-CCC
Q 012810 46 SPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEET-PRP 124 (456)
Q Consensus 46 sPSr~dGis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~-~rk 124 (456)
+|+..++- +....+|..+++||.+++.+++++++|+++|++|||||+...++.+.++++||+||||||||+||. +++
T Consensus 24 ~~~y~~~q--~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~ 101 (269)
T 2b9r_A 24 RPKYLLGR--EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPE 101 (269)
T ss_dssp CTTTTSSS--SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCC
T ss_pred CcccccCC--CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCcc
Confidence 34544442 456689999999999999999999999999999999999999999999999999999999999998 678
Q ss_pred chhHHHHHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHHHhhhchHHHHHHH
Q 012810 125 LKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVA 204 (456)
Q Consensus 125 L~dvi~v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~~l~~~~~~I~q~A 204 (456)
+++++.++... | .+++|+.||+.||++|+|++.+++|++||.+|++.++.+. .+...|
T Consensus 102 ~~d~~~~~~~~-------------------~--~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~-~~~~~a 159 (269)
T 2b9r_A 102 IGDFAFVTDNT-------------------Y--TKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDV-EQHTLA 159 (269)
T ss_dssp HHHHHHHTCSS-------------------S--CHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCH-HHHHHH
T ss_pred HHHHHHHhcCC-------------------C--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCH-HHHHHH
Confidence 99998653211 0 2567999999999999999999999999999999888764 688899
Q ss_pred HHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhcc----CCCHHHHHHHHHHHHHHHhhCCC
Q 012810 205 WNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEF----DVTPRQLEEVSNQMLELYEQNRV 276 (456)
Q Consensus 205 ~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f----~vt~eeL~ei~~~Il~lY~~~~~ 276 (456)
|+++++++.+..++.|+|+.||+||||+|+..++.+ .|+..+ |+++++|.+|++.|.++|.....
T Consensus 160 ~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~-------~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~ 228 (269)
T 2b9r_A 160 KYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG-------EWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQ 228 (269)
T ss_dssp HHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC-------CSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC-------CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999863 477654 99999999999999999987544
No 11
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.98 E-value=2.9e-32 Score=266.31 Aligned_cols=201 Identities=12% Similarity=0.130 Sum_probs=172.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCC-CCCchhHHHH
Q 012810 53 IDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEET-PRPLKDVIIV 131 (456)
Q Consensus 53 is~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~-~rkL~dvi~v 131 (456)
.+.+....+|..+++||.+++.+++++++|+++|++|||||+.++++.+.+++++|+||||||||+||. ++++++++.+
T Consensus 42 ~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 121 (257)
T 1g3n_C 42 FQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYA 121 (257)
T ss_dssp HTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHH
Confidence 344456789999999999999999999999999999999999999999999999999999999999997 7889998865
Q ss_pred HHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHHHhhhchH---HHHHHHHHHh
Q 012810 132 SYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQN---ALAQVAWNFV 208 (456)
Q Consensus 132 ~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~~l~~~~~---~I~q~A~~~l 208 (456)
+...+ .+++|+.||+.||++|+|++.+++|+.||..|++.++.+.+ .+.+.|++++
T Consensus 122 ~~~~~---------------------~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~l 180 (257)
T 1g3n_C 122 AADSF---------------------SRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLI 180 (257)
T ss_dssp TTTCS---------------------CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHH
T ss_pred HCCCC---------------------CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 32111 24679999999999999999999999999999999876542 3567899999
Q ss_pred hhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhcc----CCCHHHHHHHHHHHHHHHhhCC
Q 012810 209 NDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEF----DVTPRQLEEVSNQMLELYEQNR 275 (456)
Q Consensus 209 nDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f----~vt~eeL~ei~~~Il~lY~~~~ 275 (456)
++++.+..|+.|+|+.||+|||++|...++.+.+. ....|+..+ |+++++|.+|++.|.++|....
T Consensus 181 e~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~-~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~~~ 250 (257)
T 1g3n_C 181 TKALVDPLTGSLPASIISAAGCALLVPANVIPQDT-HSGGVVPQLASILGCDVSVLQAAVEQILTSVSDFD 250 (257)
T ss_dssp HHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC------CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCccc-chhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999998864221 124577655 9999999999999999998754
No 12
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.98 E-value=7.7e-32 Score=254.72 Aligned_cols=186 Identities=15% Similarity=0.196 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCCCCCchhHHHHHHHHhhcCCC
Q 012810 62 RKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDK 141 (456)
Q Consensus 62 R~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi~v~~~i~~k~~~ 141 (456)
...++++|.++|.+|+||+.|+++|++||||||..++++.+++++|++||||||||+||.|++++||+.++. .
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~--~----- 77 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR--I----- 77 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS--S-----
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC--C-----
Confidence 457899999999999999999999999999999999999999999999999999999999999999987542 0
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccCcC
Q 012810 142 DPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFK 221 (456)
Q Consensus 142 dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~ 221 (456)
.+.+|..+|+.||+.|+|++.+++|+.||.+|++.++++. .+.+.||.++++++.+++++.|+
T Consensus 78 ----------------~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~-~~~~~A~~i~~~~~~~~l~~g~~ 140 (207)
T 1c9b_A 78 ----------------SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK-QVQMAATHIARKAVELDLVPGRS 140 (207)
T ss_dssp ----------------CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHTTCSTTCC
T ss_pred ----------------CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHcCccCCCC
Confidence 1236889999999999999999999999999999999875 68899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHHHHHHHHHHhhC
Q 012810 222 PHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYEQN 274 (456)
Q Consensus 222 Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei~~~Il~lY~~~ 274 (456)
|+.||+||||+|++.+|.+.+. ..|+..+++++.+|.+++++|.+.....
T Consensus 141 P~~IAaAaiylA~~~~~~~~~~---~~i~~~~~v~~~tI~~~~~~l~~~l~~~ 190 (207)
T 1c9b_A 141 PISVAAAAIYMASQASAEKRTQ---KEIGDIAGVADVTIRQSYRLIYPRAPDL 190 (207)
T ss_dssp HHHHHHHHHHHHHHTSSSCCCH---HHHHHHHTCCHHHHHHHHHHHGGGHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987554 4688889999999999999999866543
No 13
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.97 E-value=6.4e-32 Score=263.41 Aligned_cols=197 Identities=14% Similarity=0.243 Sum_probs=168.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCC-CCCchhHH
Q 012810 51 DGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEET-PRPLKDVI 129 (456)
Q Consensus 51 dGis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~-~rkL~dvi 129 (456)
++.+.+....+|..+++||.+++.+++++++|+++|++|||||+.++++.+.+++++|+||||||||+||. ++++++++
T Consensus 41 ~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~ 120 (254)
T 2f2c_A 41 WEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLT 120 (254)
T ss_dssp TTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHS
T ss_pred hhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHH
Confidence 34455566789999999999999999999999999999999999999999999999999999999999995 78888887
Q ss_pred HHHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHHHhhhchH---HHHHHHHH
Q 012810 130 IVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQN---ALAQVAWN 206 (456)
Q Consensus 130 ~v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~~l~~~~~---~I~q~A~~ 206 (456)
.++...+ .+++|+.||+.||++|+|++.+++|+.||..|++.++.+.+ .+.+.|++
T Consensus 121 ~~~~~~~---------------------~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ 179 (254)
T 2f2c_A 121 YLSCDCF---------------------TNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAAST 179 (254)
T ss_dssp TTC---C---------------------CHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHH
T ss_pred HHhCCCC---------------------CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHH
Confidence 5432211 25679999999999999999999999999999999987543 35678999
Q ss_pred HhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccch----h----ccCCCHHHHHHHHHHHHHHHhhC
Q 012810 207 FVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWW----Q----EFDVTPRQLEEVSNQMLELYEQN 274 (456)
Q Consensus 207 ~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~----~----~f~vt~eeL~ei~~~Il~lY~~~ 274 (456)
++++++.+..|+.|+|+.||+|||++|....+. ...|| . ..|++.++|.+|++.|.+++...
T Consensus 180 ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~------~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~~ 249 (254)
T 2f2c_A 180 TICKALIQPNIALLSPGLICAGGLLTTIETDNT------NCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSLY 249 (254)
T ss_dssp HHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCC------SSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCcchhccCHHHHHHHHHHHHHHhcCC------CCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988521 12344 2 23999999999999999999754
No 14
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.96 E-value=6.9e-29 Score=246.02 Aligned_cols=188 Identities=16% Similarity=0.144 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCCCCcchHHHHHHHHHHhhcccCC-CCCchhHHHHHH
Q 012810 56 KRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLR-QSHTKNDRRTVATVCMFLAGKVEET-PRPLKDVIIVSY 133 (456)
Q Consensus 56 e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~-~s~~~~d~~lVaaACLfLA~KvEE~-~rkL~dvi~v~~ 133 (456)
+....+|..+++||.+++.+++++++|+++|++|||||+.. .++.+.+++++|+||||||||+||. ++++++++.++.
T Consensus 44 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~ 123 (283)
T 1w98_B 44 LLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTD 123 (283)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHc
Confidence 44557999999999999999999999999999999999998 6899999999999999999999997 778898876432
Q ss_pred HHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHHHhhhchH----------HHHHH
Q 012810 134 EIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQN----------ALAQV 203 (456)
Q Consensus 134 ~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~~l~~~~~----------~I~q~ 203 (456)
.. | .+++|+.||+.||++|+|++.+++|+.||..|++.++.+.. .....
T Consensus 124 ~~-------------------~--~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~ 182 (283)
T 1w98_B 124 GA-------------------C--SGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQ 182 (283)
T ss_dssp TS-------------------S--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHH
T ss_pred CC-------------------C--CHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHH
Confidence 10 1 25679999999999999999999999999999998764321 12234
Q ss_pred HHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHHHHHHHHHHhhC
Q 012810 204 AWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYEQN 274 (456)
Q Consensus 204 A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei~~~Il~lY~~~ 274 (456)
+..++++++.+..++.|+|+.||+||||+|+. .+.|....|+++++|.+|++.|..++...
T Consensus 183 ~~~llelsl~d~~~l~~~PS~iAaAai~la~~----------~~~l~~~tg~~~~~i~~c~~~l~~~~~~~ 243 (283)
T 1w98_B 183 IAELLDLCVLDVDCLEFPYGILAASALYHFSS----------SELMQKVSGYQWCDIENCVKWMVPFAMVI 243 (283)
T ss_dssp HHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC----------HHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC----------hHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 66788999988889999999999999999862 13577788999999999999999999764
No 15
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.96 E-value=1.4e-28 Score=240.49 Aligned_cols=197 Identities=13% Similarity=0.128 Sum_probs=162.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCC-CCCchhHHH
Q 012810 52 GIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEET-PRPLKDVII 130 (456)
Q Consensus 52 Gis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~-~rkL~dvi~ 130 (456)
+...+....+|..+++||.+++..+++.++|+++|++|+|||+.+.++.+.++++||+||||||+|+||. ++++++++.
T Consensus 39 ~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~ 118 (252)
T 1f5q_B 39 NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAY 118 (252)
T ss_dssp SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3445566789999999999999999999999999999999999999999999999999999999999996 567888876
Q ss_pred HHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHHHhhhchH---HHHHHHHHH
Q 012810 131 VSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQN---ALAQVAWNF 207 (456)
Q Consensus 131 v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~~l~~~~~---~I~q~A~~~ 207 (456)
++...+ .+++|+.||+.||++|+|+|++++|+.||..|++.++.+.+ .+...|+++
T Consensus 119 ~~~~~y---------------------t~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~ 177 (252)
T 1f5q_B 119 LCGGAT---------------------TADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPK 177 (252)
T ss_dssp HHCTTC---------------------CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCC---------------------CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 542211 24679999999999999999999999999999999876543 366789999
Q ss_pred hhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccc----hhccCCCHHHHHHHHHHHHHHHhhC
Q 012810 208 VNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMW----WQEFDVTPRQLEEVSNQMLELYEQN 274 (456)
Q Consensus 208 lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W----~~~f~vt~eeL~ei~~~Il~lY~~~ 274 (456)
+..++...-++.|+|+.||+||+.++. +...|. ...| ....|++.++|.+|++.|.+++...
T Consensus 178 l~~~l~d~~~l~~~PS~iAaaa~~~~l---~~~~~~--~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~ 243 (252)
T 1f5q_B 178 IFCALCDGRSAMKRPVLITLACMHLTM---NQKYDY--YENRIDGVCKSLYITKEELHQCCDLVDIAIVSF 243 (252)
T ss_dssp HHHHHHCHHHHTSCHHHHHHHHHHHHH---TTTCHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhchhhhccCHHHHHHHHHHHHh---ccCCCc--hhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 999999888999999999999965543 321111 0111 1344999999999999999988654
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.95 E-value=8.5e-27 Score=218.87 Aligned_cols=185 Identities=15% Similarity=0.177 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCCCCCchhHHHHHHHHhhcCCC
Q 012810 62 RKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDK 141 (456)
Q Consensus 62 R~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi~v~~~i~~k~~~ 141 (456)
...++++|.++|..|+||+.++.+|+.||+||+..+.++..++..|++||||+|||.|+.|++++||+.++. -
T Consensus 9 l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~----v--- 81 (200)
T 1ais_B 9 LAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR----V--- 81 (200)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT----S---
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC----C---
Confidence 358999999999999999999999999999999999999999999999999999999999999999987642 0
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCcccc--CCcHHHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccC
Q 012810 142 DPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNV--LHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQ 219 (456)
Q Consensus 142 dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V--~~P~~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~ 219 (456)
.+.+|..+++.|++.|+|++.+ .+|+.||.+|++.++++. .+.+.||.+++++..+.++..
T Consensus 82 ----------------~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~-~v~~~A~~i~~~~~~~~~~~g 144 (200)
T 1ais_B 82 ----------------DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE-KVRRRAIEILDEAYKRGLTSG 144 (200)
T ss_dssp ----------------CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH-HHHHHHHHHHHHHHHTTCCTT
T ss_pred ----------------CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCcccC
Confidence 1236899999999999999999 999999999999999875 688999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHHHHHHHHHHhh
Q 012810 220 FKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYEQ 273 (456)
Q Consensus 220 y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei~~~Il~lY~~ 273 (456)
++|+.||+||||+|++.+|.+.+. +.+....++++.+|..++++|.+.+..
T Consensus 145 r~P~~iAaAaly~A~~~~~~~~t~---~ei~~~~~vs~~ti~~~~~~l~~~l~~ 195 (200)
T 1ais_B 145 KSPAGLVAAALYIASLLEGEKRTQ---REVAEVARVTEVTVRNRYKELVEKLKI 195 (200)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCCH---HHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCH---HHHHHHhCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999976433 345666799999999999999998764
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.2e-25 Score=226.81 Aligned_cols=183 Identities=9% Similarity=0.058 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCCCCCchhHHHHHHHHhhcCCCC
Q 012810 63 KSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKD 142 (456)
Q Consensus 63 ~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi~v~~~i~~k~~~d 142 (456)
..++.+|..+|..|+||+.++.+|..||+||+..+.++..+...|++||||+|||.|+.|++++||+.++. ..
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~--v~----- 199 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH--VK----- 199 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS--CC-----
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC--CC-----
Confidence 46789999999999999999999999999999999999999999999999999999999999999987542 10
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC------------CccccCCcHHHHHHHHHHhhhchHHHHHHHHHHhhh
Q 012810 143 PDSIYRIKQKEVYEQQKELILLGERVVLATLA------------FDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVND 210 (456)
Q Consensus 143 P~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~------------FdL~V~~P~~~L~~~l~~l~~~~~~I~q~A~~~lnD 210 (456)
+.+|..+++.|++.|+ |++.+.+|+.||.+|++.|+++. .+.+.||.++++
T Consensus 200 ----------------~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~-~v~~~A~~i~~~ 262 (345)
T 3k7a_M 200 ----------------TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-QVTTSAEYTAKK 262 (345)
T ss_dssp ----------------SHHHHHHHHHHHHHHTCC----------------------------------------------
T ss_pred ----------------HHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHH
Confidence 2357888888888888 99999999999999999999874 789999999999
Q ss_pred hcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHHHHHHHHHHh
Q 012810 211 GLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYE 272 (456)
Q Consensus 211 sl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei~~~Il~lY~ 272 (456)
+..+.++..++|..||+||||+|+.+++.+++. +.|....+|++..|...+++|.+.+.
T Consensus 263 ~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~---~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 263 CKEIKEIAGKSPITIAVVSIYLNILLFQIPITA---AKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987654 46889999999999999999998774
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.77 E-value=5.3e-19 Score=179.88 Aligned_cols=183 Identities=9% Similarity=0.054 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCCCCCchhHHHHHHHHhhcCCCC
Q 012810 63 KSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKD 142 (456)
Q Consensus 63 ~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi~v~~~i~~k~~~d 142 (456)
..+...|.++|..|+||..++.+|..||++++....++......|++||||+|||.++.|++++||..++. ..
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~--v~----- 199 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH--VK----- 199 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT--CC-----
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhC--CC-----
Confidence 45778999999999999999999999999999999999999999999999999999999999999987643 11
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCc------------cccCCcHHHHHHHHHHhhhchHHHHHHHHHHhhh
Q 012810 143 PDSIYRIKQKEVYEQQKELILLGERVVLATLAFD------------LNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVND 210 (456)
Q Consensus 143 P~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~Fd------------L~V~~P~~~L~~~l~~l~~~~~~I~q~A~~~lnD 210 (456)
+.+|....+.|++.|++. +...+|..|+.+|+..|+++. ++...|+.+++.
T Consensus 200 ----------------~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~-~v~~~A~~i~~~ 262 (345)
T 4bbr_M 200 ----------------TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-QVTTSAEYTAKK 262 (345)
T ss_dssp ----------------TTHHHHHHHHHHHCC-------------------------------------------------
T ss_pred ----------------HHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH-HHHHHHHHHHHH
Confidence 124777888889999864 677899999999999999864 788999999999
Q ss_pred hcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHHHHHHHHHHh
Q 012810 211 GLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYE 272 (456)
Q Consensus 211 sl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei~~~Il~lY~ 272 (456)
+....++....|..||+||||+|+.+++.+++.. .--...+|++..|+..+++|++...
T Consensus 263 ~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~---eIa~v~~Vse~TIr~rykel~~~~~ 321 (345)
T 4bbr_M 263 CKEIKEIAGKSPITIAVVSIYLNILLFQIPITAA---KVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp --------------------------------------------------------------
T ss_pred HHhcccccCCChHHHHHHHHHHHHHHhCCCCCHH---HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9998899999999999999999999999876552 3445668999999999988887543
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.65 E-value=0.00011 Score=67.96 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCCCCCchhHHHHH
Q 012810 66 CTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVS 132 (456)
Q Consensus 66 ~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi~v~ 132 (456)
.+||.+++..|+++..+..+|..++.+.....-+..+.+..||+||||+||+....+++.++|..++
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~ 175 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVA 175 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 4789999999999999999999999999988888899999999999999999999999999988764
No 20
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.32 E-value=0.00094 Score=66.03 Aligned_cols=94 Identities=7% Similarity=-0.029 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC---CCCCcchHHHHHHHHHHhhcccCC-CCCchhHHHHHHHHhhcCC
Q 012810 65 YCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQ---SHTKNDRRTVATVCMFLAGKVEET-PRPLKDVIIVSYEIIHKKD 140 (456)
Q Consensus 65 ~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~---s~~~~d~~lVaaACLfLA~KvEE~-~rkL~dvi~v~~~i~~k~~ 140 (456)
+.+||.++...-+++..++-.|++|++|+..+. .+.....+-+.++||.||+|+-+. ...-+....+ .
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV-----g--- 148 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV-----G--- 148 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-----H---
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc-----c---
Confidence 456899999999999999999999999998753 244567888999999999996653 2222222221 1
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCC
Q 012810 141 KDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLH 181 (456)
Q Consensus 141 ~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~ 181 (456)
++ ..+++-.||+.+|..|+|+|.|..
T Consensus 149 -------Gi--------sl~ELN~LE~eFL~lLdf~L~V~~ 174 (293)
T 2pmi_B 149 -------GV--------RCHELNILENDFLKRVNYRIIPRD 174 (293)
T ss_dssp -------TS--------CHHHHHHHHHHHHHTTTTCCSCCT
T ss_pred -------Cc--------CHHHHHHHHHHHHHHcCCceeeCH
Confidence 01 124688999999999999999875
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.10 E-value=0.0013 Score=61.09 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCCCCCchhHHHHH
Q 012810 66 CTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVS 132 (456)
Q Consensus 66 ~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi~v~ 132 (456)
..||.+++..|+++..+..+|..++.+-+...-+..+.+..||+||||+||+..+.+++.+++..++
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~ 169 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA 169 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHh
Confidence 5789999999999999999999999999887777889999999999999999999888888887553
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.0043 Score=62.56 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCCCCCchhHHHHH
Q 012810 66 CTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVS 132 (456)
Q Consensus 66 ~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi~v~ 132 (456)
.+||.++|..|+|+..+.-+|..++++.....-...+.+..||+|||||||+.....++.++|..++
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~ 302 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTL 302 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 5688899999999999999999999999887777788999999999999999988777777776543
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=94.88 E-value=0.059 Score=54.39 Aligned_cols=91 Identities=9% Similarity=0.039 Sum_probs=72.6
Q ss_pred cCCcHHHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHH
Q 012810 179 VLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPR 258 (456)
Q Consensus 179 V~~P~~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~e 258 (456)
....+..|..++..|+++. .+...|..+....+...+.-..+...||+||||+|++..+.+..- ..-...++++..
T Consensus 126 L~~a~~~I~~~~~~L~Lp~-~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl---~eI~~~~~v~~k 201 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPK-IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTF---KEIQSLIHVKTK 201 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCH---HHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccH---HHHHHHhCCCHH
Confidence 3456788899999999986 688899999988887777778899999999999999999975332 234456689999
Q ss_pred HHHHHHHHHHHHHhh
Q 012810 259 QLEEVSNQMLELYEQ 273 (456)
Q Consensus 259 eL~ei~~~Il~lY~~ 273 (456)
+|..++..|...+..
T Consensus 202 eigr~~k~l~~~L~l 216 (345)
T 4bbr_M 202 EFGKTLNIMKNILRG 216 (345)
T ss_dssp HHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999998876653
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=94.42 E-value=0.14 Score=48.34 Aligned_cols=92 Identities=11% Similarity=0.202 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccC-cCHHHHHHHHHHHHHHHcCCCCCCCC-----cccchhccCCC
Q 012810 183 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQ-FKPHHVAAGAIFLAAKFLKVKLPSDG-----DRMWWQEFDVT 256 (456)
Q Consensus 183 ~~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~-y~Ps~IAaAaIyLA~~~l~v~lp~~~-----~~~W~~~f~vt 256 (456)
.++|.+....+++.. .+...|..++...+.....-. +.+..||+||||+|++.-+.+.+-.. ...|-..+.++
T Consensus 32 ~~~i~~v~~~l~L~~-~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~ 110 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQ-RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLS 110 (235)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCC
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhcc
Confidence 456788888888876 577788888887776666677 99999999999999999886433210 00111224678
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q 012810 257 PRQLEEVSNQMLELYEQNR 275 (456)
Q Consensus 257 ~eeL~ei~~~Il~lY~~~~ 275 (456)
.++|..+-..|++...-+-
T Consensus 111 ~~~I~~~E~~iL~~L~f~l 129 (235)
T 1zp2_A 111 RSNISEIEFEIISVLDAFL 129 (235)
T ss_dssp HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHCCCcE
Confidence 9999999999998765443
No 25
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=93.71 E-value=0.2 Score=48.27 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHH
Q 012810 184 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEV 263 (456)
Q Consensus 184 ~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei 263 (456)
++|.+....+++.. ....+|..+++..+.....-...+..||+||+++|+++.....|.-.+-.......++.++|.++
T Consensus 43 ~wl~~v~~~~~l~~-~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~m 121 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQ-ETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQM 121 (269)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHH
Confidence 45677777777765 56678888887776555566788999999999999999887555421111112224799999999
Q ss_pred HHHHHHHHhhCCCCC
Q 012810 264 SNQMLELYEQNRVQP 278 (456)
Q Consensus 264 ~~~Il~lY~~~~~~~ 278 (456)
-..|+....-+-..+
T Consensus 122 E~~IL~~L~f~l~~~ 136 (269)
T 2b9r_A 122 EMKILRALNFGLGRP 136 (269)
T ss_dssp HHHHHHHTTSCCCCC
T ss_pred HHHHHHHcCCccCCC
Confidence 999999876544333
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=93.41 E-value=0.27 Score=47.96 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcc--------------c
Q 012810 183 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDR--------------M 248 (456)
Q Consensus 183 ~~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~--------------~ 248 (456)
.++|.+....|++.. .+...|..++...+....+-.+.+..||+||||+|+++-....|...+. .
T Consensus 47 ~~~I~~v~~~l~L~~-~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~ 125 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQ-QVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYA 125 (285)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccccc
Confidence 356777778888876 5667888888887776777789999999999999999988865531000 0
Q ss_pred chhccCCCHHHHHHHHHHHHHHHhhCC
Q 012810 249 WWQEFDVTPRQLEEVSNQMLELYEQNR 275 (456)
Q Consensus 249 W~~~f~vt~eeL~ei~~~Il~lY~~~~ 275 (456)
+-..+.++.++|..+-..||+...-+-
T Consensus 126 ~~~~~~~~~~~Il~~E~~iL~~L~f~l 152 (285)
T 3rgf_B 126 FPKEFPYRMNHILECEFYLLELMDCCL 152 (285)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHHTTTCC
T ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCe
Confidence 112334678899998888888765543
No 27
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=93.13 E-value=0.32 Score=46.37 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHH
Q 012810 184 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEV 263 (456)
Q Consensus 184 ~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei 263 (456)
++|.+....+++.. ....+|..++...+.....-......||++|+++|+++-....|.-.+-.......++.++|.++
T Consensus 57 dwl~~v~~~~~l~~-etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 135 (254)
T 2f2c_A 57 TWMHLLCESFELDK-SVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQ 135 (254)
T ss_dssp HHHHHHHHHTTCCT-THHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHH
T ss_pred HHHHHHHHHHCCCc-hHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 45666677777765 46678888888777655566788999999999999999876544321111112224799999999
Q ss_pred HHHHHHHHhhCCCC
Q 012810 264 SNQMLELYEQNRVQ 277 (456)
Q Consensus 264 ~~~Il~lY~~~~~~ 277 (456)
-..|+....-+-..
T Consensus 136 E~~IL~~L~~~l~~ 149 (254)
T 2f2c_A 136 EKDILEALKWDTEA 149 (254)
T ss_dssp HHHHHHHTTTCCCC
T ss_pred HHHHHHHCCCcCCC
Confidence 99999987654433
No 28
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=92.74 E-value=0.27 Score=46.99 Aligned_cols=93 Identities=10% Similarity=0.120 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHH
Q 012810 184 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEV 263 (456)
Q Consensus 184 ~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei 263 (456)
++|.+....+++.. ....+|..++...+.....-......||++|+++|+++-....|.-.+-.......++.++|.++
T Consensus 56 dwl~ev~~~~~l~~-etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 134 (257)
T 1g3n_C 56 TWMFSVCQEYNLEP-NVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQ 134 (257)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHH
T ss_pred HHHHHHHHHhCCCc-cHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHH
Confidence 45666777777765 56678888887777655556677889999999999999877545421111112224899999999
Q ss_pred HHHHHHHHhhCCCC
Q 012810 264 SNQMLELYEQNRVQ 277 (456)
Q Consensus 264 ~~~Il~lY~~~~~~ 277 (456)
-..|+....-+-..
T Consensus 135 E~~iL~~L~~~l~~ 148 (257)
T 1g3n_C 135 EKELLEKLAWRTEA 148 (257)
T ss_dssp HHHHHHHTTTCCCC
T ss_pred HHHHHHHCCCcCCC
Confidence 99999987654433
No 29
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=92.51 E-value=0.36 Score=47.65 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=66.0
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHH
Q 012810 184 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEV 263 (456)
Q Consensus 184 ~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei 263 (456)
++|.+....+++.. ....+|..++...+....+-.+....||++|+++|+++-....|.-..-.......++.++|.++
T Consensus 76 dwl~ev~~~~~l~~-~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~m 154 (306)
T 3g33_B 76 YWMLEVCEEQRCEE-EVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDW 154 (306)
T ss_dssp HHHHHHHHHTTCCT-THHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHHhCCcH-hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHH
Confidence 45566666677765 45567888887766555566788999999999999999876544422111222235889999999
Q ss_pred HHHHHHHHhhCCCCC
Q 012810 264 SNQMLELYEQNRVQP 278 (456)
Q Consensus 264 ~~~Il~lY~~~~~~~ 278 (456)
-..||....-+-..+
T Consensus 155 E~~IL~~L~f~l~~~ 169 (306)
T 3g33_B 155 EVLVLGKLKWDLAAV 169 (306)
T ss_dssp HHHHHHHTTTCCCCC
T ss_pred HHHHHHHcCCccCCC
Confidence 999999876554443
No 30
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=92.29 E-value=0.41 Score=46.04 Aligned_cols=93 Identities=13% Similarity=0.167 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHH
Q 012810 184 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEV 263 (456)
Q Consensus 184 ~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei 263 (456)
++|.+....+++.. ....+|..+++..+...-.-......||+||+|+|+++-+...|.-.+-.......++.++|..+
T Consensus 62 ~wl~~v~~~~~l~~-~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~m 140 (271)
T 2w96_A 62 TWMLEVCEEQKCEE-EVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQM 140 (271)
T ss_dssp HHHHHHHHHTTCCT-THHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHCCch-hHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHH
Confidence 34555566666654 45577888887766555556788999999999999999987333311111112235899999999
Q ss_pred HHHHHHHHhhCCCC
Q 012810 264 SNQMLELYEQNRVQ 277 (456)
Q Consensus 264 ~~~Il~lY~~~~~~ 277 (456)
-..|++...-+-..
T Consensus 141 E~~IL~~L~~~l~~ 154 (271)
T 2w96_A 141 ELLLVNKLKWNLAA 154 (271)
T ss_dssp HHHHHHHTTTCCCC
T ss_pred HHHHHHHCCCccCC
Confidence 99999987654433
No 31
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=92.18 E-value=0.27 Score=47.09 Aligned_cols=93 Identities=20% Similarity=0.263 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHH
Q 012810 184 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEV 263 (456)
Q Consensus 184 ~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei 263 (456)
++|.+....+++.. ....+|..+++..+...-+-......||+||+++|+++.+...|.-.+-.....-.++.++|.++
T Consensus 44 dwl~~v~~~~~l~~-~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~m 122 (260)
T 2cch_B 44 DWLVEVGEEYKLQN-ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122 (260)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHH
Confidence 45666666677665 45566777776655443344566789999999999999987545421111111124889999999
Q ss_pred HHHHHHHHhhCCCC
Q 012810 264 SNQMLELYEQNRVQ 277 (456)
Q Consensus 264 ~~~Il~lY~~~~~~ 277 (456)
-..|+....-+-..
T Consensus 123 E~~iL~~L~~~l~~ 136 (260)
T 2cch_B 123 EHLVLKVLTFDLAA 136 (260)
T ss_dssp HHHHHHHTTTCCCC
T ss_pred HHHHHHHcCCccCC
Confidence 99999987654333
No 32
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=92.10 E-value=0.71 Score=45.83 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=62.6
Q ss_pred HHHHHHHHHhh--hchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCC-----
Q 012810 184 KPLVEAIKKFK--VAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVT----- 256 (456)
Q Consensus 184 ~~L~~~l~~l~--~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt----- 256 (456)
.+|.+++..++ +.. .+...|..++...+....+..+.|..||+||||+|+++-+...+-. .....+..+
T Consensus 62 ~~I~ev~~~l~~~Lp~-~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~---d~v~~~~~~p~~~~ 137 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPR-SVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSP---QFVGNLRESPLGQE 137 (323)
T ss_dssp HHHHHHHHHCTTTCCH-HHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHH---HHGGGSSSCHHHHH
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHH---HHHHHhccChhhhH
Confidence 45677778888 765 5778888898888877777899999999999999999998753211 111112223
Q ss_pred --HHHHHHHHHHHHHHHhhCC
Q 012810 257 --PRQLEEVSNQMLELYEQNR 275 (456)
Q Consensus 257 --~eeL~ei~~~Il~lY~~~~ 275 (456)
.++|..+-..|+....-+-
T Consensus 138 ~~~~~Il~~E~~iL~~L~f~l 158 (323)
T 1jkw_A 138 KALEQILEYELLLIQQLNFHL 158 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHCCCcE
Confidence 5677777777777665443
No 33
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=91.45 E-value=0.51 Score=45.91 Aligned_cols=94 Identities=12% Similarity=0.125 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhhhccc-ccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHH
Q 012810 184 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRT-SLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEE 262 (456)
Q Consensus 184 ~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t-~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~e 262 (456)
++|.+....+++.. ....+|..+++..+.. ...-......||+||+++|+++-....|.-.+-.......++.++|.+
T Consensus 55 ~wl~~v~~~~~l~~-~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~ 133 (283)
T 1w98_B 55 DWLMEVCEVYKLHR-ETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILT 133 (283)
T ss_dssp HHHHHHHHHTTCBH-HHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHH
T ss_pred HHHHHHHHHhCCCc-cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHH
Confidence 45666666677654 4557777777766543 344578899999999999999998755542111111112478999999
Q ss_pred HHHHHHHHHhhCCCCC
Q 012810 263 VSNQMLELYEQNRVQP 278 (456)
Q Consensus 263 i~~~Il~lY~~~~~~~ 278 (456)
+-..|+....-+-..+
T Consensus 134 mE~~IL~~L~~~l~~~ 149 (283)
T 1w98_B 134 MELMIMKALKWRLSPL 149 (283)
T ss_dssp HHHHHHHHTTTCCCCC
T ss_pred HHHHHHHHcCCcCCCC
Confidence 9999999876554433
No 34
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=90.68 E-value=0.38 Score=45.65 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCCH----HHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCC
Q 012810 66 CTFLQDLGMKLKVPQ----ITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEET 121 (456)
Q Consensus 66 ~~~I~~l~~~LkLp~----~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~ 121 (456)
..||..++..++.+. .+...|..++..-+....+..+.+..||+||||+|++.-+.
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 211 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKF 211 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCC
Confidence 568889999999886 67888999999988877788899999999999999997654
No 35
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=90.56 E-value=0.61 Score=44.31 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCC
Q 012810 183 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKV 239 (456)
Q Consensus 183 ~~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v 239 (456)
.++|.+....+++.. .+...|..++...+....+-.+.+..||+||+|+|+++-+.
T Consensus 35 ~~~i~~v~~~l~l~~-~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~ 90 (257)
T 2ivx_A 35 ANLIQEMGQRLNVSQ-LTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ 90 (257)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCcH-HHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC
Confidence 457788888888876 57788888888887766777899999999999999999887
No 36
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=90.48 E-value=8.5 Score=36.10 Aligned_cols=65 Identities=20% Similarity=0.367 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC---CCCCcchHHHHHHHHHHhhcccCCCCCchhHH
Q 012810 65 YCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQ---SHTKNDRRTVATVCMFLAGKVEETPRPLKDVI 129 (456)
Q Consensus 65 ~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~---s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi 129 (456)
+.+-|+.+.++-++|..++--|+.+.+.|.-.. ..+-...+.|++||+.+|+---..|+++.++.
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r 82 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVR 82 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 345578899999999999999999999997533 33456789999999999997777888887664
No 37
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=89.32 E-value=0.81 Score=43.88 Aligned_cols=95 Identities=11% Similarity=-0.021 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHH
Q 012810 184 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEV 263 (456)
Q Consensus 184 ~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei 263 (456)
++|.+....+++.. ....+|.++++..+...-.-......||++|+++|+++-....|.-..-.......++.++|.++
T Consensus 54 dWl~ev~~~~~l~~-eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~m 132 (252)
T 1f5q_B 54 TWMFCVCKDLRQDN-NVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTL 132 (252)
T ss_dssp HHHHHHHHHTTCCT-THHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCh-HHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 34556666666655 45577888877666444445667889999999999999887544321112223346899999999
Q ss_pred HHHHHHHHhhCCCCCC
Q 012810 264 SNQMLELYEQNRVQPS 279 (456)
Q Consensus 264 ~~~Il~lY~~~~~~~s 279 (456)
-..||....-+-..|.
T Consensus 133 E~~IL~~L~w~l~~pT 148 (252)
T 1f5q_B 133 EVKSLDTLSWVADRCL 148 (252)
T ss_dssp HHHHHHHTTTCCCCCC
T ss_pred HHHHHHHCCCccCCCC
Confidence 9999998765544443
No 38
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=89.02 E-value=0.71 Score=46.57 Aligned_cols=57 Identities=23% Similarity=0.218 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCC
Q 012810 183 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVK 240 (456)
Q Consensus 183 ~~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~ 240 (456)
.++|.+....|++.. .+..+|..++...+....+-.+.+..||+||||||+++-..+
T Consensus 42 v~wI~ev~~~l~L~~-~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p 98 (358)
T 2pk2_A 42 ANLLQDMGQRLNVSQ-LTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQP 98 (358)
T ss_dssp HHHHHHHHTTTTCCH-HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCC
Confidence 456777778888876 577888888888877777778999999999999999998763
No 39
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=82.87 E-value=1.6 Score=36.03 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=41.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----CCCcchHHHHHHHHHHhhcccCCCC
Q 012810 69 LQDLGMKLKVPQITIATAIIFCHRFYLRQS-----HTKNDRRTVATVCMFLAGKVEETPR 123 (456)
Q Consensus 69 I~~l~~~LkLp~~TiatAi~yf~RFy~~~s-----~~~~d~~lVaaACLfLA~KvEE~~r 123 (456)
|.++|..|++.. ++-.|-.+++||-..-+ -.+.+.-..+++|+|.|||.-....
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kV 64 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKV 64 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCC
Confidence 678999999987 66778899999975422 1244566779999999999987543
No 40
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=75.56 E-value=9.1 Score=31.47 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=39.7
Q ss_pred cCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHHHHHHHHHHHHHHhh
Q 012810 218 LQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYEQ 273 (456)
Q Consensus 218 L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~eeL~ei~~~Il~lY~~ 273 (456)
+.++-.+-++||+|.|++.++++++.. .-....++.+.+...++.+|..+-.+
T Consensus 41 ~D~s~P~f~aaA~~~acr~~K~kVdK~---KL~~~s~lk~~~f~~l~~~~e~~~~~ 93 (95)
T 3m03_A 41 LDLSRPLFTSAALLSACKILKLKVDKN---KMVATSGVKKAIFDRLCKQLEKIGQQ 93 (95)
T ss_dssp CCTTSHHHHHHHHHHHHHHTTCCCCHH---HHHHTTCBCHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHHHHHccCCCHH---HHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 345555678889999999999987541 23334489999999999999887654
No 41
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=70.40 E-value=26 Score=35.18 Aligned_cols=83 Identities=12% Similarity=0.178 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhcCCccccCC--------c-------------------HHHHHHHHHHhhhchHHHHHHHHHHhhh
Q 012810 158 QKELILLGERVVLATLAFDLNVLH--------P-------------------YKPLVEAIKKFKVAQNALAQVAWNFVND 210 (456)
Q Consensus 158 ~ke~Il~~E~~IL~~L~FdL~V~~--------P-------------------~~~L~~~l~~l~~~~~~I~q~A~~~lnD 210 (456)
.+..+-.+|..||+.|-|.-.-+. + +.-|..+|+.|+....++...+|.+++.
T Consensus 167 lvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~ 246 (347)
T 2r7g_A 167 MIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQH 246 (347)
T ss_dssp HHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 456778899999999999754321 1 1112333444443333466789999888
Q ss_pred hc--ccccccCcCHHHHHHHHHHHHHHHcCCC
Q 012810 211 GL--RTSLCLQFKPHHVAAGAIFLAAKFLKVK 240 (456)
Q Consensus 211 sl--~t~l~L~y~Ps~IAaAaIyLA~~~l~v~ 240 (456)
++ .+.++..-.-.+|-++|||..++..+..
T Consensus 247 ~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~ 278 (347)
T 2r7g_A 247 TLQNEYELMRDRHLDQIMMCSMYGICKVKNID 278 (347)
T ss_dssp HHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhChHhhcCCcHHHHHHHHHHHHHHhcCCC
Confidence 87 4678888889999999999999998864
No 42
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=65.07 E-value=13 Score=36.75 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=45.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccC---CCCCcchHHHHHHHHHHhhc-ccCCCCCchhHHHHH
Q 012810 69 LQDLGMKLKVPQITIATAIIFCHRFYLRQ---SHTKNDRRTVATVCMFLAGK-VEETPRPLKDVIIVS 132 (456)
Q Consensus 69 I~~l~~~LkLp~~TiatAi~yf~RFy~~~---s~~~~d~~lVaaACLfLA~K-vEE~~rkL~dvi~v~ 132 (456)
..++|+.|+++..|...|...|++.-..- +-...+......+|||+||. ++....+|-.++..+
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 45789999999999999999999977741 12233456667777999997 445667777776543
No 43
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=64.89 E-value=20 Score=36.82 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCCH----HHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHhhcccCCCCCchhHHHH
Q 012810 65 YCTFLQDLGMKLKVPQ----ITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIV 131 (456)
Q Consensus 65 ~~~~I~~l~~~LkLp~----~TiatAi~yf~RFy~~~s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi~v 131 (456)
+..=|.++|.+|+++. .-++|++.+.=. ....-+++.++--+.+.|+|.-||+.....+.++|+..
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~-~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~ 351 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQ-NEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTA 351 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-HCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-hhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 4557889999998765 234444433321 12344677888889999999999999888999999875
No 44
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=58.55 E-value=25 Score=35.33 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=53.5
Q ss_pred HHHHHHHHH---HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhc--cCCCCCcchHHHHHHHHHHhhcccCCCCCchhHH
Q 012810 56 KRETYLRKS---YCTFLQDLGMKLKVPQ-ITIATAIIFCHRFYL--RQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVI 129 (456)
Q Consensus 56 e~E~~lR~~---~~~~I~~l~~~LkLp~-~TiatAi~yf~RFy~--~~s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi 129 (456)
..-..+|+. +..=|.++|.+|+++. .........|...+. ..-+.+.++--+.+.|+|.-||+.....+.++|+
T Consensus 206 sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii 285 (347)
T 2r7g_A 206 SLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIV 285 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 344444543 3446889999998765 343344445555443 3346778888999999999999998888999998
Q ss_pred HH
Q 012810 130 IV 131 (456)
Q Consensus 130 ~v 131 (456)
..
T Consensus 286 ~~ 287 (347)
T 2r7g_A 286 TA 287 (347)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 45
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=50.61 E-value=51 Score=32.27 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHhhhhcc--cccc-cCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccCCCHHH
Q 012810 183 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLR--TSLC-LQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQ 259 (456)
Q Consensus 183 ~~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~--t~l~-L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~vt~ee 259 (456)
++||.++++...+.. .+.-.|..++..... ..+. -....+-|-++||.+|.+++.=.... ...|-...|++..+
T Consensus 78 ~~Yl~RI~k~t~ls~-~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ys--N~~wAkVgGisl~E 154 (293)
T 2pmi_B 78 FNYFIRLTKFSSLEH-CVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFST--NAHYAKVGGVRCHE 154 (293)
T ss_dssp HHHHHHHHHTTTCCH-HHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCC--HHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccC--hhHhhhccCcCHHH
Confidence 677777777666654 333344444443322 1222 25679999999999999999754322 35677777999999
Q ss_pred HHHHHHHHHHHHhhC
Q 012810 260 LEEVSNQMLELYEQN 274 (456)
Q Consensus 260 L~ei~~~Il~lY~~~ 274 (456)
|..+-.++|.+..-+
T Consensus 155 LN~LE~eFL~lLdf~ 169 (293)
T 2pmi_B 155 LNILENDFLKRVNYR 169 (293)
T ss_dssp HHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999876443
No 46
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=45.89 E-value=61 Score=35.23 Aligned_cols=67 Identities=10% Similarity=0.005 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhc--cCCCCCcchHHHHHHHHHHhhcccCCCCCchhHHHH
Q 012810 65 YCTFLQDLGMKLKVPQ-ITIATAIIFCHRFYL--RQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIV 131 (456)
Q Consensus 65 ~~~~I~~l~~~LkLp~-~TiatAi~yf~RFy~--~~s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi~v 131 (456)
+..=|..+|.+|+++. .+....-.+|+..+. ..-+.+.++--+.+.|+|.-||+.....+.++|+..
T Consensus 527 Aa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~ 596 (656)
T 4elj_A 527 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTA 596 (656)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 4567889999998774 343344455555543 234677888889999999999999988999999875
No 47
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=34.94 E-value=53 Score=33.73 Aligned_cols=53 Identities=9% Similarity=0.225 Sum_probs=40.2
Q ss_pred HHHHHhhhchHHHHHHHHHHhhhhc--ccccccCcCHHHHHHHHHHHHHHHcCCC
Q 012810 188 EAIKKFKVAQNALAQVAWNFVNDGL--RTSLCLQFKPHHVAAGAIFLAAKFLKVK 240 (456)
Q Consensus 188 ~~l~~l~~~~~~I~q~A~~~lnDsl--~t~l~L~y~Ps~IAaAaIyLA~~~l~v~ 240 (456)
.+|..|+....++....|.++.-++ .+.++..-.=.+|-++|||.-+++.+.+
T Consensus 288 ~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~ 342 (411)
T 4ell_A 288 TLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNID 342 (411)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCC
Confidence 3344454443357778899888776 4678888889999999999999998764
No 48
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=31.23 E-value=79 Score=34.37 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=43.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcc-----CCCCCcchHHHHHHHHHHhhcccCCCCCchhHHHHH
Q 012810 69 LQDLGMKLKVPQITIATAIIFCHRFYLR-----QSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVS 132 (456)
Q Consensus 69 I~~l~~~LkLp~~TiatAi~yf~RFy~~-----~s~~~~d~~lVaaACLfLA~KvEE~~rkL~dvi~v~ 132 (456)
..++|+.|++...|...|...|...... .++.+... ..++..+|.||.+|....+|-.++..+
T Consensus 8 f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~-~W~aC~ly~~~~~~gn~vsLt~lLr~~ 75 (656)
T 4elj_A 8 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKE-LWGICIFIAAVDLDEMSFTFTELQKNI 75 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHH-HHHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchH-HhhhhhheeeeeccCCeeeHHHHHHHh
Confidence 4678999999999999999999998842 22233333 333334666666888888887777654
No 49
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=30.68 E-value=2.1e+02 Score=28.77 Aligned_cols=105 Identities=9% Similarity=0.077 Sum_probs=65.9
Q ss_pred HHHHhcCCccccCCcHHHHHHHHHHhhhchHHHHHHHHHHhhhhccccccc--CcCHHHHHHHHHHHHHHHcCCCCCCCC
Q 012810 168 VVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCL--QFKPHHVAAGAIFLAAKFLKVKLPSDG 245 (456)
Q Consensus 168 ~IL~~L~FdL~V~~P~~~L~~~l~~l~~~~~~I~q~A~~~lnDsl~t~l~L--~y~Ps~IAaAaIyLA~~~l~v~lp~~~ 245 (456)
.|+-..|||-....|. ..+++..+........+.......-+.+ .|.+..+|-+..+..+.+++.++|..-
T Consensus 251 ~IvvsaG~Da~~~DpL-------g~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~~~ 323 (376)
T 4a69_A 251 CIVLQCGADSLGCDRL-------GCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEEL 323 (376)
T ss_dssp EEEEECCGGGBTTCSS-------CCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCSBC
T ss_pred EEEEeCcccCCCCCcc-------cCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccCCC
Confidence 3444678888888873 3355555444443333322222222222 799999999999999999998876532
Q ss_pred -cccchhccC------C----------CHHHHHHHHHHHHHHHhhCCCCCC
Q 012810 246 -DRMWWQEFD------V----------TPRQLEEVSNQMLELYEQNRVQPS 279 (456)
Q Consensus 246 -~~~W~~~f~------v----------t~eeL~ei~~~Il~lY~~~~~~~s 279 (456)
...|+..|+ + +.+.|+.+...|++-...-...|+
T Consensus 324 P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~ 374 (376)
T 4a69_A 324 PYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPS 374 (376)
T ss_dssp CCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC----
T ss_pred CCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Confidence 126877662 2 588999999999998876555444
No 50
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=21.25 E-value=64 Score=30.24 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.5
Q ss_pred cCHHHHHHHHHHHHHHHcCCCCCC
Q 012810 220 FKPHHVAAGAIFLAAKFLKVKLPS 243 (456)
Q Consensus 220 y~Ps~IAaAaIyLA~~~l~v~lp~ 243 (456)
-.|..+|+||+.+|+.-.+.+||-
T Consensus 55 E~q~dVAAAc~miAae~~~~Pipl 78 (260)
T 3h4c_A 55 ERQPDVAAACLMIAAEEAQQPLPL 78 (260)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred cccHHHHHHHHHHHHHHcCCCccH
Confidence 568899999999999999999884
Done!