Your job contains 1 sequence.
>012811
MLFLLTNSFLLRFETAISNPKSKNFFTSLRTRGSSMSSWACKKCTFLNSPSRKSTCQICL
TPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPVSGLSSFEDLTDPALDS
ELDSSVGSVFLPLQLKACTGKRKIRDQDCDGDFDGFRVTNSVSIKDDTTSGPSADNSESG
AVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWK
GYRCSVPNEMADSRGYFCMQLSKLQAKSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVAT
SHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPNVIFCGDMNWDDKLDGKFPLPDGW
VDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGL
LYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNNIG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012811
(456 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2027417 - symbol:AT1G11800 species:3702 "Arabi... 1327 1.8e-135 1
UNIPROTKB|Q28FQ5 - symbol:tdp2 "Tyrosyl-DNA phosphodieste... 224 3.8e-16 1
UNIPROTKB|A7YWI9 - symbol:TDP2 "Tyrosyl-DNA phosphodieste... 218 1.7e-15 1
UNIPROTKB|F1RUE1 - symbol:TDP2 "Uncharacterized protein" ... 214 4.9e-15 1
UNIPROTKB|O95551 - symbol:TDP2 "Tyrosyl-DNA phosphodieste... 213 6.5e-15 1
MGI|MGI:1860486 - symbol:Tdp2 "tyrosyl-DNA phosphodiester... 203 1.1e-13 1
UNIPROTKB|A5D8M0 - symbol:tdp2 "Tyrosyl-DNA phosphodieste... 203 1.1e-13 1
UNIPROTKB|F1NW29 - symbol:TDP2 "Tyrosyl-DNA phosphodieste... 201 1.8e-13 1
ZFIN|ZDB-GENE-050816-1 - symbol:tdp2b "tyrosyl-DNA phosph... 198 4.5e-13 1
RGD|1560342 - symbol:Tdp2 "tyrosyl-DNA phosphodiesterase ... 197 5.0e-13 1
TAIR|locus:2198095 - symbol:AT1G48570 species:3702 "Arabi... 117 0.00074 1
>TAIR|locus:2027417 [details] [associations]
symbol:AT1G11800 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=ISS] InterPro:IPR001876
PROSITE:PS01358 PROSITE:PS50199 SMART:SM00547 Pfam:PF03372
EMBL:CP002684 GO:GO:0008270 GO:GO:0005622 GO:GO:0004527
GO:GO:0004519 EMBL:AC007296 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:AY128286 EMBL:BT000599 IPI:IPI00522024 PIR:B86252
RefSeq:NP_563894.2 UniGene:At.42109 ProteinModelPortal:Q9SA95
SMR:Q9SA95 IntAct:Q9SA95 STRING:Q9SA95 EnsemblPlants:AT1G11800.1
GeneID:837726 KEGG:ath:AT1G11800 TAIR:At1g11800
HOGENOM:HOG000243429 InParanoid:Q9SA95 OMA:KWDQMFS PhylomeDB:Q9SA95
ProtClustDB:CLSN2690898 Genevestigator:Q9SA95 Uniprot:Q9SA95
Length = 441
Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
Identities = 263/437 (60%), Positives = 311/437 (71%)
Query: 26 FTSLRTRGSSMSSWACKKCTFLNSPSRKSTCQICLTXXXXXXXX------XXXXXXXXTW 79
F + T + SSW+C KCTFLNS S+K C ICL W
Sbjct: 7 FLRIVTSRAMSSSWSCNKCTFLNSASQKLNCMICLAPVSLPSLSPPPPSLSISANDEAKW 66
Query: 80 SCKACTFLNPYNNTSCELCNTRAPVSGLSSFEDLTDPALDS-ELDSSVGSVFLPLQLKAC 138
+CKACTFLN Y N+ C++C TR+P S L F+DLTD L+S + DSSVGSVF PL + C
Sbjct: 67 ACKACTFLNTYKNSICDVCGTRSPTSSLLGFQDLTDSGLESNDADSSVGSVFFPL--RRC 124
Query: 139 TGKRKIRDQDCDGDFDGFRVTNSVS---IKDDTTSGPSADNSESGAVSGSLKILSYNVWF 195
KRK D D + DG V S S +K + S+SG LKILSYNVWF
Sbjct: 125 I-KRKAMDDDVV-EVDGASVVCSESQGVMKKNKEIETKGVASDSGTPLTCLKILSYNVWF 182
Query: 196 REDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRG 255
REDLE++ RM+ IG LIQLHSP +ICFQE+TP IYDI KS+WWK Y CSV ++A SRG
Sbjct: 183 REDLELNLRMRAIGHLIQLHSPHLICFQEVTPEIYDIFRKSNWWKAYSCSVSVDVAVSRG 242
Query: 256 YFCMQLSKLQAKSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQ 315
Y+CM LSKL KSF+ + F NSIMGREL +AEVEV G+KPLV ATSHLESPCPGPP WDQ
Sbjct: 243 YYCMLLSKLGVKSFSSKSFGNSIMGRELSIAEVEVPGRKPLVFATSHLESPCPGPPKWDQ 302
Query: 316 MFSKERVEQAKEAINLLKKNPNVIFCGDMNWDDKLDGKFPLPDGWVDAWTELRPGENGWT 375
MFS+ERVEQAKEAI +L+ N NVIF GDMNW DKLDGKFPLPD WVD W L+PG+ G+T
Sbjct: 303 MFSRERVEQAKEAIEILRPNANVIFGGDMNWCDKLDGKFPLPDKWVDVWEVLKPGDLGFT 362
Query: 376 YDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKL 435
YDTK+N MLSGNR LQKRLDR +C L D+K+ I+M+G EAIPGL YVKEKKVR +++KL
Sbjct: 363 YDTKANPMLSGNRALQKRLDRILCRLDDYKLGGIEMVGKEAIPGLSYVKEKKVRGDIKKL 422
Query: 436 ELPVLPSDHYGLLLTIS 452
ELPVLPSDH+GLL+T+S
Sbjct: 423 ELPVLPSDHFGLLVTLS 439
>UNIPROTKB|Q28FQ5 [details] [associations]
symbol:tdp2 "Tyrosyl-DNA phosphodiesterase 2" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0016605 "PML body" evidence=ISS] [GO:0030145
"manganese ion binding" evidence=ISS] [GO:0070260 "5'-tyrosyl-DNA
phosphodiesterase activity" evidence=ISS] InterPro:IPR009060
Pfam:PF03372 GO:GO:0000287 GO:GO:0016605 GO:GO:0030145
GO:GO:0003697 GO:GO:0006302 GO:GO:0090305 InterPro:IPR005135
SUPFAM:SSF56219 SUPFAM:SSF46934 GO:GO:0004518 GO:GO:0070260
CTD:51567 eggNOG:NOG277021 HOVERGEN:HBG079625 HOGENOM:HOG000236334
EMBL:CR761829 EMBL:BC166146 RefSeq:NP_001016944.1 UniGene:Str.3755
ProteinModelPortal:Q28FQ5 STRING:Q28FQ5 GeneID:549698
KEGG:xtr:549698 Xenbase:XB-GENE-967013 Bgee:Q28FQ5 Uniprot:Q28FQ5
Length = 373
Score = 224 (83.9 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 94/319 (29%), Positives = 143/319 (44%)
Query: 115 DPALDSELDSSVGS-VFLPLQLKACTGKRKIRDQDCDGDFDGFRVTNSVSIKDDTTSGPS 173
+P ++S L + + + PL+ + +G D GD VT S + TTS S
Sbjct: 62 EPGVESALQNKAAADIADPLKQETMSGTASDSCIDLTGD--DLVVTKS----EATTSNSS 115
Query: 174 ADNSESGAVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDIL 233
E L++N+ ++ + R + + + L+SPD++ QE+ P Y+ L
Sbjct: 116 TVKQED---ESHFSFLTWNIDGLDESNVAERARGVCSYLALYSPDVVFLQEVIPPYYEYL 172
Query: 234 CKSSWWKGYRCSVPNEMADSRGYF-CMQLSKLQAKSFTCE--PFRNSIMGRELCVAEVEV 290
K + Y NE D YF M L K + K + E P+ +++M R L VA V +
Sbjct: 173 KKRA--VSYTIITGNE--DE--YFTAMMLKKSRVKLISQEIVPYPSTVMMRNLLVANVNI 226
Query: 291 QGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNP---NVIFCGDMNWD 347
G + + TSHLES T D SKER++Q + + P VIF GD N
Sbjct: 227 SGNS-ICLMTSHLES------TKDH--SKERLKQLDIVLKKMMDAPPLATVIFGGDTNLR 277
Query: 348 DKLDGKFP-LPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFK 405
D+ K +P+ +D W L +P +T+DTK NK L +IC LR +
Sbjct: 278 DQEVAKIGGMPNNILDVWDFLGKPEHCRYTWDTKVNKNLRAP---------YICRLRFDR 328
Query: 406 II-RIDMIGVEAIPGLLYV 423
I R G + IP LY+
Sbjct: 329 IFFRASQEGSQVIPQSLYL 347
Score = 124 (48.7 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 46/137 (33%), Positives = 64/137 (46%)
Query: 318 SKERVEQAKEAINLLKKNP---NVIFCGDMNWDDKLDGKFP-LPDGWVDAWTEL-RPGEN 372
SKER++Q + + P VIF GD N D+ K +P+ +D W L +P
Sbjct: 245 SKERLKQLDIVLKKMMDAPPLATVIFGGDTNLRDQEVAKIGGMPNNILDVWDFLGKPEHC 304
Query: 373 GWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKII-RIDMIGVEAIPGLLYVKEKKVRKE 431
+T+DTK NK L +IC LR +I R G + IP LY+
Sbjct: 305 RYTWDTKVNKNLRAP---------YICRLRFDRIFFRASQEGSQVIPQSLYLAGT----- 350
Query: 432 MQKLELPVLPSDHYGLL 448
+KL+ PSDH+GLL
Sbjct: 351 -EKLDCGRFPSDHWGLL 366
>UNIPROTKB|A7YWI9 [details] [associations]
symbol:TDP2 "Tyrosyl-DNA phosphodiesterase 2" species:9913
"Bos taurus" [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0000287
"magnesium ion binding" evidence=ISS] [GO:0016605 "PML body"
evidence=ISS] [GO:0070260 "5'-tyrosyl-DNA phosphodiesterase
activity" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA] [GO:0036317
"tyrosyl-RNA phosphodiesterase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR009060 Pfam:PF03372 GO:GO:0005730
GO:GO:0000287 GO:GO:0016605 GO:GO:0030145 GO:GO:0003697
GO:GO:0006302 GO:GO:0090305 InterPro:IPR005135 SUPFAM:SSF56219
SUPFAM:SSF46934 GO:GO:0004518 GO:GO:0070260 EMBL:BC134603
IPI:IPI00686499 RefSeq:NP_001098811.1 UniGene:Bt.13626
ProteinModelPortal:A7YWI9 STRING:A7YWI9 PRIDE:A7YWI9
Ensembl:ENSBTAT00000000472 GeneID:507579 KEGG:bta:507579 CTD:51567
eggNOG:NOG277021 GeneTree:ENSGT00390000014242 HOVERGEN:HBG079625
InParanoid:A7YWI9 OMA:LITWNID OrthoDB:EOG4HQDJR NextBio:20868128
ArrayExpress:A7YWI9 Uniprot:A7YWI9
Length = 364
Score = 218 (81.8 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 89/316 (28%), Positives = 143/316 (45%)
Query: 119 DSELDSSVGSVFLPLQLKACTGKR--KIRDQDCDGDFDGFRVTNSVSIKDDTTSGPSADN 176
D E++ ++ S F P ++ + R + + D +S+S K T+ S
Sbjct: 51 DWEMERALNSYFEPAVEESASESRPESLSEPGSCVDLTKEETNDSISSKTSTSEDKSVQQ 110
Query: 177 SESGAVSGSLKILSYNVWFREDLEMH---PRMKTIGDLIQLHSPDIICFQEITPNIYDIL 233
E G+V S+ W + L+M+ R + + + L+SPD+I QE+ P Y L
Sbjct: 111 -EDGSV------FSFITWNIDGLDMNNLLERARGVCSYLTLYSPDVIFLQEVIPPYYAYL 163
Query: 234 CKSSWWKGYRCSVPNEMADSRGYFC---MQLSKLQAKSFTCEPFRNSIMGRELCVAEVEV 290
K + Y+ E GYF ++ S+++ KS PF N+ M R L V V
Sbjct: 164 KKKA--SSYKIITGRE----EGYFTAIMLKKSRVKFKSQEIIPFPNTQMMRNLLCVHVSV 217
Query: 291 QGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPN---VIFCGDMNWD 347
G + L + TSHLES + +KER+ Q K + +++ P VIF GD N
Sbjct: 218 SGNE-LCLMTSHLEST--------RGHAKERMNQFKMVLEKMQEAPGSATVIFAGDTNLR 268
Query: 348 DKLDGKFP-LPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRLDR--FICSLRD 403
D+ K LP+ +D W L +P +T+DT+ N L + R DR F +
Sbjct: 269 DQEVTKCGGLPNNILDVWEFLGKPKHCQYTWDTQMNSNLGIAANCKLRFDRIFFRAAAEG 328
Query: 404 FKII--RIDMIGVEAI 417
II +D++G+E +
Sbjct: 329 GHIIPQSLDLLGLEKL 344
>UNIPROTKB|F1RUE1 [details] [associations]
symbol:TDP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070260 "5'-tyrosyl-DNA phosphodiesterase activity"
evidence=IEA] [GO:0036317 "tyrosyl-RNA phosphodiesterase activity"
evidence=IEA] [GO:0030145 "manganese ion binding" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0006302 "double-strand
break repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR009060 Pfam:PF03372 GO:GO:0016605 GO:GO:0006302
InterPro:IPR005135 SUPFAM:SSF56219 SUPFAM:SSF46934 GO:GO:0070260
CTD:51567 GeneTree:ENSGT00390000014242 OMA:LITWNID EMBL:CU468861
EMBL:CU368380 RefSeq:NP_001230615.1 UniGene:Ssc.13700
Ensembl:ENSSSCT00000001188 GeneID:100157860 KEGG:ssc:100157860
Uniprot:F1RUE1
Length = 362
Score = 214 (80.4 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 82/271 (30%), Positives = 128/271 (47%)
Query: 165 KDDTTSGPSADNSESGAVS---GSLKILSYNVWFREDLEMHP---RMKTIGDLIQLHSPD 218
K++T+ S S S V GS + S+ W + L+++ R + + + L+SPD
Sbjct: 89 KEETSDSFSCKTSTSENVQQEDGS--VFSFITWNIDGLDLNSLLERARGVCSYLALYSPD 146
Query: 219 IICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFC---MQLSKLQAKSFTCEPFR 275
+I QE+ P Y L K + Y NE GYF ++ S+++ KS PF
Sbjct: 147 VIFLQEVIPPYYTYLKKKA--SSYEIITGNE----EGYFTAIMLKKSRVKFKSQEIIPFP 200
Query: 276 NSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKN 335
N+ M R L V V G + L + TSHLES + ++ER+ Q K + +++
Sbjct: 201 NTKMMRNLLCVHVSVSGNE-LCLMTSHLEST--------RGHAEERMNQLKMVLKKMQEA 251
Query: 336 PN---VIFCGDMNWDDKLDGKFP-LPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTL 390
P VIF GD N D+ K LP+ +D W L +P +T+DT+ N L T
Sbjct: 252 PESATVIFAGDTNLRDQEVTKCGGLPNNILDVWEFLGKPKHCQYTWDTQMNSNLGIAATC 311
Query: 391 QKRLDR--FICSLRDFKII--RIDMIGVEAI 417
+ R DR F + II +D++G+E +
Sbjct: 312 KLRFDRIFFRAAAEGSHIIPRSLDLLGLEKL 342
>UNIPROTKB|O95551 [details] [associations]
symbol:TDP2 "Tyrosyl-DNA phosphodiesterase 2" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0070260 "5'-tyrosyl-DNA phosphodiesterase
activity" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP;IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA;TAS] [GO:0016605 "PML body" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0030145 "manganese
ion binding" evidence=IDA] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0007166 "cell surface receptor
signaling pathway" evidence=TAS] [GO:0036317 "tyrosyl-RNA
phosphodiesterase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR009060 Pfam:PF03372 GO:GO:0005737 GO:GO:0003714
GO:GO:0005730 GO:GO:0000287 GO:GO:0016605 GO:GO:0030145
GO:GO:0007166 EMBL:AL031775 GO:GO:0003697 GO:GO:0006302
GO:GO:0090305 InterPro:IPR005135 SUPFAM:SSF56219 SUPFAM:SSF46934
GO:GO:0004518 GO:GO:0070260 CTD:51567 eggNOG:NOG277021
HOVERGEN:HBG079625 OMA:LITWNID OrthoDB:EOG4HQDJR EMBL:AJ269473
EMBL:AF201687 EMBL:AF223469 EMBL:AK002168 EMBL:AK296623
EMBL:AK298699 EMBL:AY613922 EMBL:BC017553 EMBL:BC110375
IPI:IPI00009913 IPI:IPI00954485 IPI:IPI00954580 RefSeq:NP_057698.2
UniGene:Hs.731481 ProteinModelPortal:O95551 SMR:O95551
IntAct:O95551 MINT:MINT-5005899 STRING:O95551 PhosphoSite:O95551
PaxDb:O95551 PRIDE:O95551 DNASU:51567 Ensembl:ENST00000341060
Ensembl:ENST00000378198 Ensembl:ENST00000545995 GeneID:51567
KEGG:hsa:51567 UCSC:uc003nej.3 GeneCards:GC06M024651
HGNC:HGNC:17768 MIM:605764 neXtProt:NX_O95551 PharmGKB:PA165618310
InParanoid:O95551 PhylomeDB:O95551 GenomeRNAi:51567 NextBio:55388
ArrayExpress:O95551 Bgee:O95551 CleanEx:HS_TTRAP
Genevestigator:O95551 GermOnline:ENSG00000111802 GO:GO:0036317
Uniprot:O95551
Length = 362
Score = 213 (80.0 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 88/314 (28%), Positives = 146/314 (46%)
Query: 119 DSELDSSVGSVFLPLQLKACTGKRKIRDQDCDGDFDGFRVTNSVSIKDDTTS--GPSADN 176
D E++ ++ S F P ++ +R + D +TN + D TTS PS D
Sbjct: 51 DWEMERALNSYFEPPVEESALERRPETISEPKTYVD---LTNEETT-DSTTSKISPSEDT 106
Query: 177 SESGAVSGSL-KILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCK 235
+ +GS+ ++++N+ + + R + + + L+SPD+I QE+ P Y L K
Sbjct: 107 QQE---NGSMFSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKK 163
Query: 236 SSWWKGYRCSVPNEMADSRGYFC---MQLSKLQAKSFTCEPFRNSIMGRELCVAEVEVQG 292
S Y +E GYF ++ S+++ KS PF ++ M R L V V G
Sbjct: 164 RS--SNYEIITGHE----EGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVHVNVSG 217
Query: 293 KKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPN---VIFCGDMNWDDK 349
+ L + TSHLES + + ER+ Q K + +++ P VIF GD N D+
Sbjct: 218 NE-LCLMTSHLEST--------RGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDR 268
Query: 350 LDGKFP-LPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRLDR--FICSLRDFK 405
+ LP+ VD W L +P +T+DT+ N L + R DR F + +
Sbjct: 269 EVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACKLRFDRIFFRAAAEEGH 328
Query: 406 II--RIDMIGVEAI 417
II +D++G+E +
Sbjct: 329 IIPRSLDLLGLEKL 342
>MGI|MGI:1860486 [details] [associations]
symbol:Tdp2 "tyrosyl-DNA phosphodiesterase 2" species:10090
"Mus musculus" [GO:0000287 "magnesium ion binding" evidence=ISO]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=ISA] [GO:0016605 "PML body" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=ISO] [GO:0036317 "tyrosyl-RNA phosphodiesterase
activity" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0070260 "5'-tyrosyl-DNA phosphodiesterase
activity" evidence=ISO] Pfam:PF03372 MGI:MGI:1860486 GO:GO:0005730
GO:GO:0000287 GO:GO:0016605 GO:GO:0030145 GO:GO:0003697
GO:GO:0006302 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:CH466561 EMBL:AL589699 GO:GO:0070260 CTD:51567
eggNOG:NOG277021 GeneTree:ENSGT00390000014242 HOVERGEN:HBG079625
OMA:LITWNID OrthoDB:EOG4HQDJR EMBL:AJ251328 EMBL:BC132511
EMBL:BC132513 IPI:IPI00122372 RefSeq:NP_062424.1 UniGene:Mm.427162
PDB:4GYZ PDB:4GZ0 PDB:4GZ1 PDB:4GZ2 PDBsum:4GYZ PDBsum:4GZ0
PDBsum:4GZ1 PDBsum:4GZ2 ProteinModelPortal:Q9JJX7 SMR:Q9JJX7
STRING:Q9JJX7 PhosphoSite:Q9JJX7 PaxDb:Q9JJX7 PRIDE:Q9JJX7
Ensembl:ENSMUST00000038039 GeneID:56196 KEGG:mmu:56196
UCSC:uc007pwl.2 HOGENOM:HOG000236334 InParanoid:A2RTH9 ChiTaRS:TDP2
NextBio:312014 Bgee:Q9JJX7 CleanEx:MM_TTRAP Genevestigator:Q9JJX7
GermOnline:ENSMUSG00000035958 Uniprot:Q9JJX7
Length = 370
Score = 203 (76.5 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 77/265 (29%), Positives = 121/265 (45%)
Query: 166 DDTT---SGPSADNSESGAVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICF 222
+DTT + PS E S ++ +++N+ + + R + + + L+SPD++
Sbjct: 104 NDTTILEASPSGTPLED---SSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFL 160
Query: 223 QEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQLSK---LQAKSFTCEPFRNSIM 279
QE+ P L K + Y NE GYF L K ++ KS PF N+ M
Sbjct: 161 QEVIPPYCAYLKKRA--ASYTIITGNE----EGYFTAILLKKGRVKFKSQEIIPFPNTKM 214
Query: 280 GRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPN-- 337
R L V + G + + TSHLES + S ER+ Q K + +++ P+
Sbjct: 215 MRNLLCVNVSLGGNE-FCLMTSHLEST--------REHSAERIRQLKTVLGKMQEAPDST 265
Query: 338 -VIFCGDMNWDDKLDGKFP-LPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRL 394
VIF GD N D+ K LPD DAW L +P +T+DTK+N L + R
Sbjct: 266 TVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRF 325
Query: 395 DRFICSLRDFKII--RIDMIGVEAI 417
DR + +I +D++G+E +
Sbjct: 326 DRIFFRAEEGHLIPQSLDLVGLEKL 350
Score = 119 (46.9 bits), Expect = 0.00031, P = 0.00031
Identities = 44/140 (31%), Positives = 65/140 (46%)
Query: 318 SKERVEQAKEAINLLKKNPN---VIFCGDMNWDDKLDGKFP-LPDGWVDAWTEL-RPGEN 372
S ER+ Q K + +++ P+ VIF GD N D+ K LPD DAW L +P
Sbjct: 244 SAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHC 303
Query: 373 GWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEM 432
+T+DTK+N L + R DR + +I + + GL
Sbjct: 304 QYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSL----DLVGL------------ 347
Query: 433 QKLELPVLPSDHYGLLLTIS 452
+KL+ PSDH+GLL T++
Sbjct: 348 EKLDCGRFPSDHWGLLCTLN 367
>UNIPROTKB|A5D8M0 [details] [associations]
symbol:tdp2 "Tyrosyl-DNA phosphodiesterase 2" species:8355
"Xenopus laevis" [GO:0000287 "magnesium ion binding" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0016605 "PML body"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0070260 "5'-tyrosyl-DNA phosphodiesterase activity"
evidence=ISS] InterPro:IPR009060 Pfam:PF03372 GO:GO:0000287
GO:GO:0016605 GO:GO:0030145 GO:GO:0003697 GO:GO:0006302
GO:GO:0090305 InterPro:IPR005135 SUPFAM:SSF56219 SUPFAM:SSF46934
GO:GO:0004518 GO:GO:0070260 CTD:51567 HOVERGEN:HBG079625
EMBL:BC141728 RefSeq:NP_001092156.1 UniGene:Xl.8025
ProteinModelPortal:A5D8M0 GeneID:100049743 KEGG:xla:100049743
Xenbase:XB-GENE-967018 Uniprot:A5D8M0
Length = 371
Score = 203 (76.5 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 72/241 (29%), Positives = 118/241 (48%)
Query: 189 LSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPN 248
L++N+ ++ + R + + + L++PD++ QE+ P + L K + Y+ N
Sbjct: 126 LTWNIDGLDESNVAERARAVCSCLALYTPDVVFLQEVIPPYCEYLKKRA--VSYKIITGN 183
Query: 249 EMADSRGYF-CMQLSKLQAKSFTCE--PFRNSIMGRELCVAEVEVQGKKPLVVATSHLES 305
E D YF M L K + K + E P+ +++M R L VA V + G + + TSHLES
Sbjct: 184 E--DE--YFTAMMLKKSRVKLISQEIVPYPSTLMMRNLLVANVNISGNS-ICLMTSHLES 238
Query: 306 PCPGPPTWDQMFSKERVEQAKEAINLLKKNP---NVIFCGDMNWDDKLDGKFP-LPDGWV 361
T D SKER++Q + + P VIF GD N D+ K LP+ +
Sbjct: 239 ------TKDH--SKERLKQLDTVLKKMMDAPPSATVIFGGDTNLRDQEVAKIGGLPNTIL 290
Query: 362 DAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRLDRFI--CSLRDFKIIR--IDMIGVEA 416
D W L +P +T+DTK N L T + R DR + S+ ++I ++++G E
Sbjct: 291 DVWEFLGKPEHCRYTWDTKLNNNLRACYTSRLRFDRILYRASMEGSQVIPQFLNLVGTEK 350
Query: 417 I 417
+
Sbjct: 351 L 351
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 47/136 (34%), Positives = 63/136 (46%)
Query: 318 SKERVEQAKEAINLLKKNP---NVIFCGDMNWDDKLDGKFP-LPDGWVDAWTEL-RPGEN 372
SKER++Q + + P VIF GD N D+ K LP+ +D W L +P
Sbjct: 243 SKERLKQLDTVLKKMMDAPPSATVIFGGDTNLRDQEVAKIGGLPNTILDVWEFLGKPEHC 302
Query: 373 GWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEM 432
+T+DTK N L T + R DR + R M G + IP L + V E
Sbjct: 303 RYTWDTKLNNNLRACYTSRLRFDRIL--------YRASMEGSQVIPQFLNL----VGTE- 349
Query: 433 QKLELPVLPSDHYGLL 448
KL+ PSDH+GLL
Sbjct: 350 -KLDCGRFPSDHWGLL 364
>UNIPROTKB|F1NW29 [details] [associations]
symbol:TDP2 "Tyrosyl-DNA phosphodiesterase 2" species:9031
"Gallus gallus" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0036317 "tyrosyl-RNA phosphodiesterase activity"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0000287 "magnesium ion binding" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0030145
"manganese ion binding" evidence=ISS] [GO:0070260 "5'-tyrosyl-DNA
phosphodiesterase activity" evidence=ISS] InterPro:IPR009060
Pfam:PF03372 GO:GO:0007275 GO:GO:0000287 GO:GO:0016605
GO:GO:0030145 GO:GO:0003697 GO:GO:0006302 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 SUPFAM:SSF46934 GO:GO:0004518
GO:GO:0070260 CTD:51567 GeneTree:ENSGT00390000014242
EMBL:AADN02008334 IPI:IPI00593115 RefSeq:XP_419093.1
ProteinModelPortal:F1NW29 Ensembl:ENSGALT00000022184 GeneID:421007
KEGG:gga:421007 Uniprot:F1NW29
Length = 369
Score = 201 (75.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 82/266 (30%), Positives = 125/266 (46%)
Query: 166 DDTTSGPSADNSESGAVS--GSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQ 223
DDT S S+ ++S S ++++N+ + + R + + + L+SPD++ Q
Sbjct: 99 DDTASNTSSSGADSKQQDDDSSFSLITWNIDGLDLGNLQERARGVCSYLALYSPDVVFLQ 158
Query: 224 EITPNIYDILCKSSWWKGYRCSVPNEMADSRGYF-CMQLSKLQAKSFTCEPFR--NSIMG 280
E+ P IL + + GY +P + D GYF M L K + K E R + M
Sbjct: 159 EVIPPYLCILQRRAG--GYTI-IPGNV-D--GYFTAMLLKKPRVKVLKQEIIRFPTTSMM 212
Query: 281 RELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK---NPN 337
R L V V + G + L + TSHLES T D SKER++Q + +N +++ +
Sbjct: 213 RNLLVVHVNISGNE-LCLMTSHLES------TRDH--SKERMKQLQIVLNKMQEESQSTT 263
Query: 338 VIFCGDMNWDDKLDGKFP-LPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRLD 395
VIF GD N D K LP D W L +P +T+DT SN L + R D
Sbjct: 264 VIFGGDTNLRDSEVAKLGGLPKNITDIWEFLGKPQHCRYTWDTSSNTNLRIESKCKLRFD 323
Query: 396 R--FICSLRDFKII--RIDMIGVEAI 417
R F + II +D+IG+E +
Sbjct: 324 RLYFRPAAEGGHIIPRNMDLIGLEKL 349
>ZFIN|ZDB-GENE-050816-1 [details] [associations]
symbol:tdp2b "tyrosyl-DNA phosphodiesterase 2b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0000287 "magnesium
ion binding" evidence=ISS] [GO:0016605 "PML body" evidence=ISS]
[GO:0070260 "5'-tyrosyl-DNA phosphodiesterase activity"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0007368 "determination of left/right
symmetry" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0030512 "negative regulation of transforming growth factor beta
receptor signaling pathway" evidence=IMP] [GO:0060027 "convergent
extension involved in gastrulation" evidence=IMP]
InterPro:IPR009060 Pfam:PF03372 ZFIN:ZDB-GENE-050816-1
GO:GO:0007368 InterPro:IPR005135 SUPFAM:SSF56219 SUPFAM:SSF46934
GO:GO:0060027 GO:GO:0030512 EMBL:JN411679 UniGene:Dr.18071
Uniprot:G3LSZ3
Length = 383
Score = 198 (74.8 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 88/325 (27%), Positives = 144/325 (44%)
Query: 108 SSFEDLTDPALDSELDSS--VGSVFLPLQLKACTGKRKIRDQDCDG-DFDGFRVTNSVSI 164
S FE D D E + + G+ +A K+K++ + D D T S+++
Sbjct: 57 SFFEARMDSVFDEEAEKTEVTGNKRKDDTAEASGTKKKLKTDNADCIDLTAEEPTCSITV 116
Query: 165 KDDTTSGPSADNSESGAVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQE 224
+ ++S L I+S+NV + L + R + + + L++PD++ QE
Sbjct: 117 NSKENQAENG-TAKSEVEDSKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQE 175
Query: 225 ITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFC-MQLSKLQAKSFTCEP--FRNSIMGR 281
+ P L K + Y E +D GYF + L K + K F + M R
Sbjct: 176 LIPAYVQYLKKRA--VSYLFF---EGSDD-GYFTGIMLRKSRVKFLESVIICFPTTQMMR 229
Query: 282 ELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPN---V 338
L + +V G+K L + TSHLES C S+ER +Q + + +K+ P V
Sbjct: 230 NLLIXQVTFSGQK-LYLMTSHLES-CKNQ-------SQERTKQLRVVLQKIKEAPEDAIV 280
Query: 339 IFCGDMNWDD-KLDGKFPLPDGWVDAWTELRPGEN-GWTYDTKSNKMLSGNRTLQKRLDR 396
IF GD N D ++ LP G D W +L E+ +T+DTK+N + + R DR
Sbjct: 281 IFAGDTNLRDAEVANVGGLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDR 340
Query: 397 -FICSLRDFKIIRID---MIGVEAI 417
F+ S + + D +IG+E +
Sbjct: 341 IFLRSAKTRPAVTPDHMALIGMEKL 365
>RGD|1560342 [details] [associations]
symbol:Tdp2 "tyrosyl-DNA phosphodiesterase 2" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=ISO;ISS] [GO:0003697 "single-stranded DNA binding"
evidence=IEA;ISO;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006302
"double-strand break repair" evidence=IEA;ISO;ISS] [GO:0016605 "PML
body" evidence=IEA;ISO;ISS] [GO:0030145 "manganese ion binding"
evidence=IEA;ISO;ISS] [GO:0036317 "tyrosyl-RNA phosphodiesterase
activity" evidence=IEA;ISO] [GO:0070260 "5'-tyrosyl-DNA
phosphodiesterase activity" evidence=IEA;ISO;ISS] Pfam:PF03372
RGD:1560342 GO:GO:0005730 GO:GO:0000287 GO:GO:0016605 GO:GO:0030145
GO:GO:0003697 GO:GO:0006302 GO:GO:0090305 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0004518 GO:GO:0070260 CTD:51567
eggNOG:NOG277021 HOVERGEN:HBG079625 OrthoDB:EOG4HQDJR EMBL:BC101920
IPI:IPI00192092 RefSeq:NP_001030119.1 UniGene:Rn.115091
ProteinModelPortal:Q3T1H5 STRING:Q3T1H5 GeneID:498749
KEGG:rno:498749 UCSC:RGD:1560342 InParanoid:Q3T1H5 NextBio:700741
ArrayExpress:Q3T1H5 Uniprot:Q3T1H5
Length = 366
Score = 197 (74.4 bits), Expect = 5.0e-13, P = 5.0e-13
Identities = 76/265 (28%), Positives = 119/265 (44%)
Query: 166 DDTT---SGPSADNSESGAVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICF 222
+DTT + PS E S ++ +++N+ + + R + + + L+SPD++
Sbjct: 100 NDTTILETSPSGTPLED---SSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFL 156
Query: 223 QEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQLSKLQAKSFTCE---PFRNSIM 279
QE+ P+ L K + + Y NE GYF L K F + PF N+ M
Sbjct: 157 QEVIPSYCAYLRKRA--RTYNIITGNE----EGYFTAILLKKGRVKFKGQEIIPFPNTKM 210
Query: 280 GRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK---NP 336
R L V + G + + TSHLES + S ER+ Q K +++ +
Sbjct: 211 MRNLLCVNVSLGGNE-FCLMTSHLEST--------RKHSAERINQLKTVFQKMQEATDST 261
Query: 337 NVIFCGDMNWDDKLDGKFP-LPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRL 394
VIF GD N D+ K LPD DAW L +P +T+DTK+N L + R
Sbjct: 262 TVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCRYTWDTKANDNLRIPAACKHRF 321
Query: 395 DRFICSLRDFKII--RIDMIGVEAI 417
DR + +I +D+IG+E +
Sbjct: 322 DRIFFRAEEGHLIPQSLDLIGLERL 346
>TAIR|locus:2198095 [details] [associations]
symbol:AT1G48570 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] InterPro:IPR001876 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50199 SMART:SM00547 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0008270 GO:GO:0005622 EMBL:AC020889
EMBL:AY065170 EMBL:BT000067 IPI:IPI00524312 PIR:D96525
RefSeq:NP_175290.1 UniGene:At.28575 UniGene:At.48290
ProteinModelPortal:Q9LP67 SMR:Q9LP67 STRING:Q9LP67 PaxDb:Q9LP67
PRIDE:Q9LP67 EnsemblPlants:AT1G48570.1 GeneID:841278
KEGG:ath:AT1G48570 TAIR:At1g48570 eggNOG:NOG117333
HOGENOM:HOG000005959 InParanoid:Q9LP67 OMA:AFKSRND PhylomeDB:Q9LP67
ProtClustDB:CLSN2914195 ArrayExpress:Q9LP67 Genevestigator:Q9LP67
Uniprot:Q9LP67
Length = 455
Score = 117 (46.2 bits), Expect = 0.00074, P = 0.00074
Identities = 27/83 (32%), Positives = 35/83 (42%)
Query: 21 KSKNFFTSLRTRGSSMSSWACKKCTFLNSPSRKSTCQICLTXXXXXXXXXXXXXXXXTWS 80
KS+N +S R R + WAC KC F+N +R C+ C W
Sbjct: 285 KSRNDESSQRDRPLYSADWACPKCDFVNF-ARNERCREC--NEVADRRPVAAVVKEGDWL 341
Query: 81 CKACTFLNPYNNTSCELCNTRAP 103
C C+FLN N SC C + P
Sbjct: 342 CPECSFLNFTRNQSCLKCKAKGP 364
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 456 440 0.00089 118 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 625 (66 KB)
Total size of DFA: 312 KB (2158 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.78u 0.09s 37.87t Elapsed: 00:00:02
Total cpu time: 37.78u 0.09s 37.87t Elapsed: 00:00:02
Start: Sat May 11 14:50:56 2013 End: Sat May 11 14:50:58 2013