BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012811
(456 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28FQ5|TYDP2_XENTR Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus tropicalis GN=tdp2 PE=2
SV=2
Length = 373
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 153/343 (44%), Gaps = 47/343 (13%)
Query: 115 DPALDSEL-DSSVGSVFLPLQLKACTGKRKIRDQDCDGDFDGFRVTNSVSIKDDTTSGPS 173
+P ++S L + + + PL+ + +G D GD VT S + ++++
Sbjct: 62 EPGVESALQNKAAADIADPLKQETMSGTASDSCIDLTGD--DLVVTKSEATTSNSSTVKQ 119
Query: 174 ADNSESGAVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDIL 233
D S L++N+ ++ + R + + + L+SPD++ QE+ P Y+ L
Sbjct: 120 EDESH-------FSFLTWNIDGLDESNVAERARGVCSYLALYSPDVVFLQEVIPPYYEYL 172
Query: 234 CKSSWWKGYRCSVPNEMADSRGYFCMQLSKLQAKSFTCE--PFRNSIMGRELCVAEVEVQ 291
K + Y NE + M L K + K + E P+ +++M R L VA V +
Sbjct: 173 KKRA--VSYTIITGNE---DEYFTAMMLKKSRVKLISQEIVPYPSTVMMRNLLVANVNIS 227
Query: 292 GKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNP---NVIFCGDMNWDD 348
G + + TSHLES T D SKER++Q + + P VIF GD N D
Sbjct: 228 GNS-ICLMTSHLES------TKDH--SKERLKQLDIVLKKMMDAPPLATVIFGGDTNLRD 278
Query: 349 KLDGKF-PLPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLR-DFK 405
+ K +P+ +D W L +P +T+DTK NK L +IC LR D
Sbjct: 279 QEVAKIGGMPNNILDVWDFLGKPEHCRYTWDTKVNKNLRA---------PYICRLRFDRI 329
Query: 406 IIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLL 448
R G + IP LY+ +KL+ PSDH+GLL
Sbjct: 330 FFRASQEGSQVIPQSLYLAGT------EKLDCGRFPSDHWGLL 366
>sp|A7YWI9|TYDP2_BOVIN Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus GN=TDP2 PE=2 SV=1
Length = 364
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 155/350 (44%), Gaps = 57/350 (16%)
Query: 119 DSELDSSVGSVFLPLQLKACTGKR--KIRDQDCDGDFDGFRVTNSVSIKDDTTSGPSADN 176
D E++ ++ S F P ++ + R + + D +S+S K T+ S
Sbjct: 51 DWEMERALNSYFEPAVEESASESRPESLSEPGSCVDLTKEETNDSISSKTSTSEDKSV-Q 109
Query: 177 SESGAVSGSLKILSYNVWFREDLEMH---PRMKTIGDLIQLHSPDIICFQEITPNIYDIL 233
E G+V S+ W + L+M+ R + + + L+SPD+I QE+ P Y L
Sbjct: 110 QEDGSV------FSFITWNIDGLDMNNLLERARGVCSYLTLYSPDVIFLQEVIPPYYAYL 163
Query: 234 CKSSWWKGYRCSVPNEMADSRGYFC---MQLSKLQAKSFTCEPFRNSIMGRELCVAEVEV 290
K + Y+ E GYF ++ S+++ KS PF N+ M R L V V
Sbjct: 164 KKKA--SSYKIITGRE----EGYFTAIMLKKSRVKFKSQEIIPFPNTQMMRNLLCVHVSV 217
Query: 291 QGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPN---VIFCGDMNWD 347
G + L + TSHLES + +KER+ Q K + +++ P VIF GD N
Sbjct: 218 SGNE-LCLMTSHLEST--------RGHAKERMNQFKMVLEKMQEAPGSATVIFAGDTNLR 268
Query: 348 DKLDGK-FPLPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRLDR--FICSLRD 403
D+ K LP+ +D W L +P +T+DT+ N L + R DR F +
Sbjct: 269 DQEVTKCGGLPNNILDVWEFLGKPKHCQYTWDTQMNSNLGIAANCKLRFDRIFFRAAAEG 328
Query: 404 FKII--RIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTI 451
II +D++G+E KL+ PSDH+GLL T+
Sbjct: 329 GHIIPQSLDLLGLE------------------KLDCGRFPSDHWGLLCTL 360
>sp|Q9JJX7|TYDP2_MOUSE Tyrosyl-DNA phosphodiesterase 2 OS=Mus musculus GN=Tdp2 PE=1 SV=1
Length = 370
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 126/280 (45%), Gaps = 43/280 (15%)
Query: 183 SGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGY 242
S ++ +++N+ + + R + + + L+SPD++ QE+ P L K + Y
Sbjct: 121 SSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRA--ASY 178
Query: 243 RCSVPNEMADSRGYFCMQL---SKLQAKSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVA 299
NE GYF L +++ KS PF N+ M R L V + G + +
Sbjct: 179 TIITGNE----EGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNE-FCLM 233
Query: 300 TSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPN---VIFCGDMNWDDKLDGK-FP 355
TSHLES + S ER+ Q K + +++ P+ VIF GD N D+ K
Sbjct: 234 TSHLES--------TREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGG 285
Query: 356 LPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKII--RIDMI 412
LPD DAW L +P +T+DTK+N L + R DR + +I +D++
Sbjct: 286 LPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLV 345
Query: 413 GVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTIS 452
G+E KL+ PSDH+GLL T++
Sbjct: 346 GLE------------------KLDCGRFPSDHWGLLCTLN 367
>sp|O95551|TYDP2_HUMAN Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1
Length = 362
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 134/297 (45%), Gaps = 49/297 (16%)
Query: 166 DDTTS--GPSADNSESGAVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQ 223
D TTS PS D + SL +++N+ + + R + + + L+SPD+I Q
Sbjct: 94 DSTTSKISPSEDTQQENGSMFSL--ITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQ 151
Query: 224 EITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFC---MQLSKLQAKSFTCEPFRNSIMG 280
E+ P Y L K S Y +E GYF ++ S+++ KS PF ++ M
Sbjct: 152 EVIPPYYSYLKKRS--SNYEIITGHE----EGYFTAIMLKKSRVKLKSQEIIPFPSTKMM 205
Query: 281 RELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNP---N 337
R L V V G + L + TSHLES + + ER+ Q K + +++ P
Sbjct: 206 RNLLCVHVNVSGNE-LCLMTSHLEST--------RGHAAERMNQLKMVLKKMQEAPESAT 256
Query: 338 VIFCGDMNWDDKLDGK-FPLPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRLD 395
VIF GD N D+ + LP+ VD W L +P +T+DT+ N L + R D
Sbjct: 257 VIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACKLRFD 316
Query: 396 R--FICSLRDFKII--RIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLL 448
R F + + II +D++G+E KL+ PSDH+GLL
Sbjct: 317 RIFFRAAAEEGHIIPRSLDLLGLE------------------KLDCGRFPSDHWGLL 355
>sp|A5D8M0|TYDP2_XENLA Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus laevis GN=tdp2 PE=2 SV=1
Length = 371
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 124/267 (46%), Gaps = 35/267 (13%)
Query: 189 LSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPN 248
L++N+ ++ + R + + + L++PD++ QE+ P + L K + Y+ N
Sbjct: 126 LTWNIDGLDESNVAERARAVCSCLALYTPDVVFLQEVIPPYCEYLKKRA--VSYKIITGN 183
Query: 249 EMADSRGYFCMQLSKLQAKSFTCE--PFRNSIMGRELCVAEVEVQGKKPLVVATSHLESP 306
E + M L K + K + E P+ +++M R L VA V + G + + TSHLES
Sbjct: 184 E---DEYFTAMMLKKSRVKLISQEIVPYPSTLMMRNLLVANVNISGNS-ICLMTSHLES- 238
Query: 307 CPGPPTWDQMFSKERVEQAKEAINLLKKNP---NVIFCGDMNWDDKLDGKF-PLPDGWVD 362
T D SKER++Q + + P VIF GD N D+ K LP+ +D
Sbjct: 239 -----TKDH--SKERLKQLDTVLKKMMDAPPSATVIFGGDTNLRDQEVAKIGGLPNTILD 291
Query: 363 AWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGLL 421
W L +P +T+DTK N L T + R DR + R M G + IP L
Sbjct: 292 VWEFLGKPEHCRYTWDTKLNNNLRACYTSRLRFDRI--------LYRASMEGSQVIPQFL 343
Query: 422 YVKEKKVRKEMQKLELPVLPSDHYGLL 448
+ +KL+ PSDH+GLL
Sbjct: 344 NLVGT------EKLDCGRFPSDHWGLL 364
>sp|Q3T1H5|TYDP2_RAT Tyrosyl-DNA phosphodiesterase 2 OS=Rattus norvegicus GN=Tdp2 PE=2
SV=1
Length = 366
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 124/280 (44%), Gaps = 43/280 (15%)
Query: 183 SGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGY 242
S ++ +++N+ + + R + + + L+SPD++ QE+ P+ L K + + Y
Sbjct: 117 SSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPSYCAYLRKRA--RTY 174
Query: 243 RCSVPNEMADSRGYFCMQLSKLQAKSFTCE---PFRNSIMGRELCVAEVEVQGKKPLVVA 299
NE GYF L K F + PF N+ M R L V + G + +
Sbjct: 175 NIITGNE----EGYFTAILLKKGRVKFKGQEIIPFPNTKMMRNLLCVNVSLGGNE-FCLM 229
Query: 300 TSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK---NPNVIFCGDMNWDDKLDGK-FP 355
TSHLES + S ER+ Q K +++ + VIF GD N D+ K
Sbjct: 230 TSHLEST--------RKHSAERINQLKTVFQKMQEATDSTTVIFAGDTNLRDQEVIKCGG 281
Query: 356 LPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKII--RIDMI 412
LPD DAW L +P +T+DTK+N L + R DR + +I +D+I
Sbjct: 282 LPDNVFDAWEFLGKPKHCRYTWDTKANDNLRIPAACKHRFDRIFFRAEEGHLIPQSLDLI 341
Query: 413 GVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTIS 452
G+E +L+ PSDH+GLL T++
Sbjct: 342 GLE------------------RLDCGRFPSDHWGLLCTLN 363
>sp|F1NW29|TYDP2_CHICK Tyrosyl-DNA phosphodiesterase 2 OS=Gallus gallus GN=TDP2 PE=3 SV=2
Length = 369
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 134/297 (45%), Gaps = 47/297 (15%)
Query: 166 DDTTSGPSADNSESGAVS--GSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQ 223
DDT S S+ ++S S ++++N+ + + R + + + L+SPD++ Q
Sbjct: 99 DDTASNTSSSGADSKQQDDDSSFSLITWNIDGLDLGNLQERARGVCSYLALYSPDVVFLQ 158
Query: 224 EITPNIYDILCKSSWWKGYRCSVPNEMADSRGYF-CMQLSKLQAKSFTCEPFR--NSIMG 280
E+ P IL + + GY +P + GYF M L K + K E R + M
Sbjct: 159 EVIPPYLCILQRRA--GGYTI-IPGNVD---GYFTAMLLKKPRVKVLKQEIIRFPTTSMM 212
Query: 281 RELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLK---KNPN 337
R L V V + G + L + TSHLES T D SKER++Q + +N ++ ++
Sbjct: 213 RNLLVVHVNISGNE-LCLMTSHLES------TRDH--SKERMKQLQIVLNKMQEESQSTT 263
Query: 338 VIFCGDMNWDDKLDGKF-PLPDGWVDAWTEL-RPGENGWTYDTKSNKMLSGNRTLQKRLD 395
VIF GD N D K LP D W L +P +T+DT SN L + R D
Sbjct: 264 VIFGGDTNLRDSEVAKLGGLPKNITDIWEFLGKPQHCRYTWDTSSNTNLRIESKCKLRFD 323
Query: 396 R--FICSLRDFKII--RIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLL 448
R F + II +D+IG+E KL+ PSDH+GLL
Sbjct: 324 RLYFRPAAEGGHIIPRNMDLIGLE------------------KLDCGRFPSDHWGLL 362
>sp|Q5XJA0|TYDP2_DANRE Tyrosyl-DNA phosphodiesterase 2 OS=Danio rerio GN=tdp2 PE=1 SV=3
Length = 369
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 170/388 (43%), Gaps = 62/388 (15%)
Query: 97 LCNTRAPVSG---------LSSFEDLTDPALDSELDSSVGSVFLPLQLKA-CTG-KRKIR 145
LC+ A VSG L+ E + AL+S ++ + SVF K TG KRK
Sbjct: 11 LCDQFAFVSGSDSAVAQCYLAENEWDMERALNSFFEAHMDSVFDEEAEKTEVTGNKRKDD 70
Query: 146 DQDCDGDFDGFRVTNSVSI---KDDTTSGPSADNSESGAVSGS---------LKILSYNV 193
+ G + N+ I ++ T + ++ E+ A +G+ L I+S+NV
Sbjct: 71 TAEASGTKKKLKTDNADCIDLTAEEPTCSITVNSKENQAENGTAKSEVEDSKLSIISWNV 130
Query: 194 WFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADS 253
+ L + R + + + L++PD++ QE+ P L K + S
Sbjct: 131 DGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAYVQYLKKRA------VSYLFFEGSD 184
Query: 254 RGYFC-MQLSKLQAKSFTCEP--FRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGP 310
GYF + L K + K E F + M R L +A+V G+K L + TSHLES C
Sbjct: 185 DGYFTGIMLRKSRVKFLESEIICFPTTQMMRNLLIAQVTFSGQK-LYLMTSHLES-CKNQ 242
Query: 311 PTWDQMFSKERVEQAKEAINLLKKNPN---VIFCGDMNW-DDKLDGKFPLPDGWVDAWTE 366
S+ER +Q + + +K+ P VIF GD N D ++ LP G D W +
Sbjct: 243 -------SQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANVGGLPAGVCDVWEQ 295
Query: 367 LRPGEN-GWTYDTKSNKMLSGNRTLQKRLDR-FICSLRDFKIIRIDMIGVEAIPGLLYVK 424
L E+ +T+DTK+N + + R DR F+ S + + D + A+ G
Sbjct: 296 LGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAPPVTPDHM---ALIG----- 347
Query: 425 EKKVRKEMQKLELPVLPSDHYGLLLTIS 452
M+KL+ SDH+G+ T +
Sbjct: 348 -------MEKLDCGRYTSDHWGIYCTFN 368
>sp|A8XU68|TYDP2_CAEBR 5'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis briggsae
GN=CBG18823 PE=3 SV=2
Length = 337
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 32/250 (12%)
Query: 154 DGFRVTNSVSIKDDTTSGPSADNSESGAVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQ 213
D F+ T +++ GPS+ + L ++S+N+ + + RMK + +++
Sbjct: 73 DAFKET-----RNEAVMGPSS------SAGFELSLMSWNIDGLDGRSLATRMKAVATIVK 121
Query: 214 LHSPDIICFQEITPNIYDILCK-SSWWKGYRCSVPNEMADSRGYFCMQLSKL-QAKSFTC 271
+PDI+ QE+ + + K S +K Y + + Y + +SK+ + +
Sbjct: 122 KVNPDILFLQEVVDRDLEPIDKLQSLYKIYYSN-----KGCQYYTAILVSKMFEVEKHDV 176
Query: 272 EPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFS--KERVEQAKEAI 329
F+NS M R L + E + G K +V T HLES FS +R +
Sbjct: 177 VHFQNSGMYRTLQIVEGSIGGMKVFLVNT-HLESMRDHRAQRMAQFSFCMDRCAE----- 230
Query: 330 NLLKKNPN--VIFCGDMNWDDKLDGKFPLPDGWVDAWTELR-PGENGWTYDTKSNKMLSG 386
++ NP + F GD+N D+ +PDG +DAW + WT+DT N G
Sbjct: 231 -IIANNPGCFLFFGGDLNLRDEEIS--SIPDGVLDAWVSAGCDTKTKWTWDTYKNDNKQG 287
Query: 387 NRTLQKRLDR 396
+ R DR
Sbjct: 288 FNGAKMRFDR 297
>sp|Q9XWG3|TYDP2_CAEEL 5'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis elegans
GN=Y63D3A.4 PE=1 SV=1
Length = 362
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 21/222 (9%)
Query: 186 LKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCS 245
+ ++S+N+ + + RMK + +++ +PDI+ QE+ D+ Y+
Sbjct: 120 VSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDR--DLAPIDKLQSLYKIY 177
Query: 246 VPNEMADSRGYFCMQLSKL-QAKSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLE 304
N+ + Y + +SK+ + F+NS M R L + E + G K ++ T HLE
Sbjct: 178 YSNK--GCQYYTAILVSKMFDVEKHDVIHFQNSGMYRTLQILEGSIGGLKVFLLNT-HLE 234
Query: 305 SPCPGPPTWDQMFS--KERVEQAKEAINLLKKNPN--VIFCGDMNWDDKLDGKFPLPDGW 360
S P F ++V + ++ +NP V F GD+N D+ + +PDG
Sbjct: 235 STREHRPQRCAQFGFCMDKVRE------IIAQNPGALVFFGGDLNLRDEEVSR--VPDGV 286
Query: 361 VDAWTELRPGEN--GWTYDTKSNKMLSGNRTLQKRLDRFICS 400
DAW E +N +T+DT N G + R DR S
Sbjct: 287 KDAW-EAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWS 327
>sp|Q9JLG8|CAN15_MOUSE Calpain-15 OS=Mus musculus GN=Solh PE=1 SV=1
Length = 1095
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 34 SSMSSWACKKCTFLNSPSRKSTCQICLTPSSS--FSPPSKSSVSVPTWSCKACTFLNPYN 91
+++ W+C +CTFLN P+ + C IC P + SV W C CTF N
Sbjct: 2 ATVGEWSCARCTFLN-PAGQRQCSICEAPRHKPDLDQILRLSVEEQKWPCARCTFRNFLG 60
Query: 92 NTSCELCN-TRAPVSG 106
+CE+C T PV G
Sbjct: 61 KEACEVCGFTPEPVPG 76
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 48 NSPSRKSTCQICLTPSSS---FSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPV 104
+SP+R +C + + ++P S SS TWSC CT NP C +C
Sbjct: 320 SSPARCESCSDVIDLAGDIVRYTPASPSSPDFTTWSCARCTLRNPTTAPRCSVCGG---- 375
Query: 105 SGLSSFEDLTDP 116
S L F++ ++P
Sbjct: 376 SKLHGFQEHSEP 387
>sp|O75808|CAN15_HUMAN Calpain-15 OS=Homo sapiens GN=SOLH PE=2 SV=1
Length = 1086
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 34 SSMSSWACKKCTFLNSPSRKSTCQICLTPSSS--FSPPSKSSVSVPTWSCKACTFLNPYN 91
+++ W+C +CTFLN P+ + C IC P + + SV W C CTF N
Sbjct: 2 ATVGEWSCVRCTFLN-PAGQRQCSICEAPRHKPDLNHILRLSVEEQKWPCARCTFRNFLG 60
Query: 92 NTSCELCN-TRAPVSGLSSFEDLTD-----PALDSELDSSVGSVFLPLQLKACTGKRKIR 145
+CE+C T P G + L PA+ E S P++ R
Sbjct: 61 KEACEVCGFTPEPAPGAAFLPVLNGVLPKPPAILGEPKGSCQEEAGPVRTAGLVATEPAR 120
Query: 146 DQ 147
Q
Sbjct: 121 GQ 122
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 66 FSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPVSGLSSFEDLTDP 116
++P S SS TWSC CT NP C C S L F++ +P
Sbjct: 331 YTPASPSSPDFTTWSCAKCTLRNPTVAPRCSACG----CSKLHGFQEHGEP 377
>sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium
discoideum GN=apeA PE=2 SV=2
Length = 361
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 112/286 (39%), Gaps = 63/286 (22%)
Query: 157 RVTNSVSIKDDTTSGPSADNSESGAVSGSLKILSYNV-WFREDLEMHPRMKTIGDLIQLH 215
+ T SVSI D P + ++ +KI+S+NV F+ L K + ++
Sbjct: 83 KTTASVSIAIDNLDEPKVEENQ-------MKIISWNVAGFKSVLS-----KGFTEYVEKE 130
Query: 216 SPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYF---CMQLSKLQAKSFTCE 272
+PD++C QE N +I K KGY AD +G+ + K A +F
Sbjct: 131 NPDVLCLQETKINPSNI-KKDQMPKGYEYHFIE--ADQKGHHGTGVLTKKKPNAITFGIG 187
Query: 273 PFRNSIMGRELCVAEVEVQGKKPLV--VATSHLESPCPGPPTWDQMFSKERVEQAKEAIN 330
++ GR + + + + T L+ WD F + E +N
Sbjct: 188 IAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDF-----QAYLEKLN 242
Query: 331 LLKKNPNVIFCGDMN-WDDKLDGKFP--------------------LPDGWVDAWTELRP 369
K +I+CGD+N ++D K P L G+VD++ P
Sbjct: 243 ATKP---IIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNFLEKGYVDSYRHFNP 299
Query: 370 GENG----WTYDTKSNKMLSGNRT--LQKRLDRFICSLRDFKIIRI 409
G+ G W+Y L G R+ + RLD F+ S R I+I
Sbjct: 300 GKEGSYTFWSY-------LGGGRSKNVGWRLDYFVVSKRLMDSIKI 338
>sp|O43038|VPS36_SCHPO Vacuolar protein-sorting-associated protein 36
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps36 PE=3 SV=1
Length = 467
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 38 SWACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCEL 97
SWACK CTF+N + C+ C + KS C ACTF N + +CE+
Sbjct: 98 SWACKICTFINVGDPINPCRNCGVANRFTIIKPKSDARFSQGLCTACTFQNYPDLNTCEI 157
Query: 98 CNTR 101
C +
Sbjct: 158 CGNQ 161
>sp|Q6NUB7|ZRN1B_XENLA Ubiquitin thioesterase zranb1-B OS=Xenopus laevis GN=zranb1-b PE=2
SV=1
Length = 701
Score = 39.3 bits (90), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 45/125 (36%), Gaps = 48/125 (38%)
Query: 39 WACKKCTFLNSPSRKSTCQIC---------------------------------LTPSSS 65
WAC+ CTF N PS C +C + P SS
Sbjct: 8 WACEYCTFENWPS-AIKCTMCRAPRPSGAIITEEPFKNRTPDVGSMEREIGSPLICPDSS 66
Query: 66 FSPPSKSSVSVPT---WSCKACTFLNPYNNTSCELC----NTRAPV-------SGLSSFE 111
P KSS S+ T WSC+ CT+LN C C TR+P SGL S
Sbjct: 67 ARPRVKSSYSMETSSKWSCQICTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGLRSIP 126
Query: 112 DLTDP 116
DP
Sbjct: 127 GPIDP 131
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 27/93 (29%)
Query: 37 SSWACKKCTFLNSPSRKSTCQICLT--------------------------PSSSFSPPS 70
S W+C+ CT+LN P R C CL+ P ++ +
Sbjct: 81 SKWSCQICTYLNWP-RAIRCTQCLSQRRTRSPTESPQSSGSGLRSIPGPIDPCEEYNDRN 139
Query: 71 KSSVSVPTWSCKACTFLNPYNNTSCELCNTRAP 103
K ++ W+C ACT+ N C +C+ P
Sbjct: 140 KLNIKGQHWTCSACTYENCAKAKKCVVCDHPTP 172
>sp|Q9H0F6|SHRPN_HUMAN Sharpin OS=Homo sapiens GN=SHARPIN PE=1 SV=1
Length = 387
Score = 38.9 bits (89), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 77 PTWSCKACTFLNPYNNTSCELCNTRAP 103
P+WSC +CTF+N + CE+C+T+ P
Sbjct: 350 PSWSCPSCTFINAPDRPGCEMCSTQRP 376
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 38 SWACKKCTFLNSPSRKSTCQICLT 61
SW+C CTF+N+P R C++C T
Sbjct: 351 SWSCPSCTFINAPDRPG-CEMCST 373
>sp|Q91WA6|SHRPN_MOUSE Sharpin OS=Mus musculus GN=Sharpin PE=1 SV=1
Length = 380
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 79 WSCKACTFLNPYNNTSCELCNTRAPVS 105
WSC +CTF+N N CE+C+T+ P +
Sbjct: 345 WSCPSCTFINASNRPGCEMCSTQRPCA 371
>sp|Q9EQL9|SHRPN_RAT Sharpin OS=Rattus norvegicus GN=Sharpin PE=1 SV=1
Length = 381
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 79 WSCKACTFLNPYNNTSCELCNTRAPVS 105
WSC +CTF+N N CE+C+T+ P +
Sbjct: 346 WSCPSCTFINASNRPGCEMCSTQRPCA 372
>sp|Q5U595|ZRN1A_XENLA Ubiquitin thioesterase zranb1-A OS=Xenopus laevis GN=zranb1-a PE=2
SV=1
Length = 701
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 27/93 (29%)
Query: 37 SSWACKKCTFLNSPSRKSTCQICL----TPSSSFSPPSKSS--VSVPT------------ 78
S W+C+ CT+LN P R C CL T S + SP S S S+P+
Sbjct: 81 SKWSCQICTYLNWP-RAIRCTQCLSQRRTRSPTESPQSSGSGLRSIPSPIDPCEEYNDRN 139
Query: 79 --------WSCKACTFLNPYNNTSCELCNTRAP 103
W+C ACT+ N C +C+ P
Sbjct: 140 KLNIKGQHWTCSACTYENCAKAKKCVVCDHPTP 172
>sp|E1BDF2|SHRPN_BOVIN Sharpin OS=Bos taurus GN=SHARPIN PE=3 SV=1
Length = 409
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 77 PTWSCKACTFLNPYNNTSCELCNTRAP 103
P W C +CTF+N + CE+C+T+ P
Sbjct: 340 PGWPCPSCTFINAPSRPGCEMCSTQRP 366
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 20 PKSKNFFTSLRTRGSSMSS-----WACKKCTFLNSPSRKSTCQICLT 61
P+S + + SS+ S W C CTF+N+PSR C++C T
Sbjct: 318 PQSLGLPPTPQPTSSSLPSPLQPGWPCPSCTFINAPSRPG-CEMCST 363
>sp|Q924T7|RNF31_MOUSE E3 ubiquitin-protein ligase RNF31 OS=Mus musculus GN=Rnf31 PE=1
SV=2
Length = 1066
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 32/207 (15%)
Query: 38 SWACKKCTFLNSPSRKSTCQICLTPSSSFSP--------------------PSKSSVSVP 77
WAC+ CTF N + C IC P + P P ++
Sbjct: 347 QWACQSCTFENEAA-AVLCAICERPRLAQPPSLVVDSHDAGVCQQSLKQEDPLLTAAQPQ 405
Query: 78 TWSCKACTFLNPYNNTSCELCN-TRAPVSGLSSFEDLTDPALDSELDSSVGSVFLPLQLK 136
W C CTF N C +CN TR P+ + + +L+ S L L
Sbjct: 406 VWYCDHCTFCNSGPVWVCAMCNRTRDPIPTQPALQSYPS-SLEKGRPKPGSSQHLGSSLP 464
Query: 137 ACTGKRKIRDQDCDGDFDGFRVTNSVSIKDDTTSGPSADNSESG-AVSGSLKILSYNVWF 195
A G + + QD +G ++ + I++ T+G S + S SG+ L W
Sbjct: 465 ASCGDPEKQRQD-KMRKEGLQLVS--MIQEGETAGASPEEVFSALQYSGTEVPLQ---WL 518
Query: 196 REDLEMHPRMKTIGDLIQLHSPDIICF 222
R +L ++ + +L P++ F
Sbjct: 519 RSELSY--VLEMVAELAGQQDPELGAF 543
>sp|A0JMQ9|ZRN1B_DANRE Ubiquitin thioesterase zranb1-B OS=Danio rerio GN=zranb1b PE=2 SV=1
Length = 716
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 38/121 (31%)
Query: 37 SSWACKKCTFLNSPSRKSTCQICL-----------------TPSSSFSPPS--------- 70
S W+C CT+LN P R C CL TP +S S PS
Sbjct: 84 SKWSCHMCTYLNWP-RAIRCTQCLSQRQQGSQQHSPLSPSETPQTSGSRPSPVTSDPCEE 142
Query: 71 -----KSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPVSGLSSFEDLTDPALDSELDSS 125
+ ++ W C ACT+ N + C +C+ P + P DSE +S+
Sbjct: 143 YNDRNRLNMHAQRWPCSACTYENWPKSLRCVVCDHPKPSGSPET------PQQDSEAESA 196
Query: 126 V 126
Sbjct: 197 T 197
>sp|B1H2Q2|ZRAN1_XENTR Ubiquitin thioesterase zranb1 OS=Xenopus tropicalis GN=zranb1 PE=2
SV=1
Length = 701
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 27/93 (29%)
Query: 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFSP---PSKSSVS---VPT------------ 78
+ W+C CT+LN P R C CL+ + SP P S S +P+
Sbjct: 81 TKWSCHMCTYLNWP-RAIRCTQCLSQRRTRSPTESPQSSGSSLRAIPSPIDPCEEYNDRN 139
Query: 79 --------WSCKACTFLNPYNNTSCELCNTRAP 103
W+C ACT+ N C +C+ P
Sbjct: 140 KLNIKGQHWTCSACTYENCAKAKKCVVCDHPTP 172
>sp|Q7M760|ZRAN1_MOUSE Ubiquitin thioesterase Zranb1 OS=Mus musculus GN=Zranb1 PE=2 SV=1
Length = 708
Score = 35.8 bits (81), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 27/91 (29%)
Query: 39 WACKKCTFLNSPSRKSTCQICL----TPSSSFSPPSKSSVSVPT---------------- 78
W+C CT+LN P R C CL T S + SP S S S P
Sbjct: 88 WSCHMCTYLNWP-RAIRCTQCLSQRRTRSPTESPQSSGSGSRPVAFSVDPCEEYNDRNKL 146
Query: 79 ------WSCKACTFLNPYNNTSCELCNTRAP 103
W+C CT+ N C +C+ P
Sbjct: 147 NTRTQHWTCSVCTYENWAKAKKCVVCDHPRP 177
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 37/111 (33%), Gaps = 46/111 (41%)
Query: 39 WACKKCTFLNSPSRKSTCQIC--------------------------------------L 60
WAC+ CT+ N PS C +C +
Sbjct: 8 WACEYCTYENWPS-AIKCTMCRAQRPSGTIITEDPFKSGSSDVGRDWDPSSTEGGSSPLI 66
Query: 61 TPSSSFSPPSKSSVSVPT---WSCKACTFLNPYNNTSCELC----NTRAPV 104
P SS P KSS S+ WSC CT+LN C C TR+P
Sbjct: 67 CPDSSARPRVKSSYSMENANKWSCHMCTYLNWPRAIRCTQCLSQRRTRSPT 117
>sp|Q8TEA8|DTD1_HUMAN D-tyrosyl-tRNA(Tyr) deacylase 1 OS=Homo sapiens GN=DTD1 PE=1 SV=2
Length = 209
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 20/109 (18%)
Query: 230 YDILCKSSW-----WKG----YRCSVPNEMADSRGYFCMQLSKLQAKSFTCEPFRNSIMG 280
Y+ILC S + KG + ++P E A+ G++ L +L+ K++ E ++ G
Sbjct: 72 YEILCVSQFTLQCVLKGNKPDFHLAMPTEQAE--GFYNSFLEQLR-KTYRPELIKDGKFG 128
Query: 281 RELCVAEVEVQGKKPLVVATSHLESPCPGPPTWD--QMFSKERVEQAKE 327
+V +Q P+ + LESP PG T D Q+ E+ +Q KE
Sbjct: 129 ---AYMQVHIQNDGPVTI---ELESPAPGTATSDPKQLSKLEKQQQRKE 171
>sp|Q9UGI0|ZRAN1_HUMAN Ubiquitin thioesterase ZRANB1 OS=Homo sapiens GN=ZRANB1 PE=1 SV=2
Length = 708
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 27/91 (29%)
Query: 39 WACKKCTFLNSPSRKSTCQICL----TPSSSFSPPSKSSVSVPT---------------- 78
W+C CT+LN P R C CL T S + SP S S S P
Sbjct: 88 WSCHMCTYLNWP-RAIRCTQCLSQRRTRSPTESPQSSGSGSRPVAFSVDPCEEYNDRNKL 146
Query: 79 ------WSCKACTFLNPYNNTSCELCNTRAP 103
W+C CT+ N C +C+ P
Sbjct: 147 NTRTQHWTCSVCTYENWAKAKRCVVCDHPRP 177
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 37/111 (33%), Gaps = 46/111 (41%)
Query: 39 WACKKCTFLNSPSRKSTCQIC--------------------------------------L 60
WAC+ CT+ N PS C +C +
Sbjct: 8 WACEYCTYENWPS-AIKCTMCRAQRPSGTIITEDPFKSGSSDVGRDWDPSSTEGGSSPLI 66
Query: 61 TPSSSFSPPSKSSVSVPT---WSCKACTFLNPYNNTSCELC----NTRAPV 104
P SS P KSS S+ WSC CT+LN C C TR+P
Sbjct: 67 CPDSSARPRVKSSYSMENANKWSCHMCTYLNWPRAIRCTQCLSQRRTRSPT 117
>sp|A6QP16|ZRAN1_BOVIN Ubiquitin thioesterase ZRANB1 OS=Bos taurus GN=ZRANB1 PE=2 SV=1
Length = 708
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 27/91 (29%)
Query: 39 WACKKCTFLNSPSRKSTCQICL----TPSSSFSPPSKSSVSVPT---------------- 78
W+C CT+LN P R C CL T S + SP S S S P
Sbjct: 88 WSCHMCTYLNWP-RAIRCTQCLSQRRTRSPTESPQSSGSGSRPVAFSVDPCEEYNDRNKL 146
Query: 79 ------WSCKACTFLNPYNNTSCELCNTRAP 103
W+C CT+ N C +C+ P
Sbjct: 147 NTRTQHWTCSICTYENWAKAKKCVVCDHPRP 177
Score = 32.0 bits (71), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 37/111 (33%), Gaps = 46/111 (41%)
Query: 39 WACKKCTFLNSPSRKSTCQIC--------------------------------------L 60
WAC+ CT+ N PS C +C +
Sbjct: 8 WACEYCTYENWPS-AIKCTMCRAQRPSGTIITEDPFKSGSSDVGRDWDPSSTEGGSSPLI 66
Query: 61 TPSSSFSPPSKSSVSVPT---WSCKACTFLNPYNNTSCELC----NTRAPV 104
P SS P KSS S+ WSC CT+LN C C TR+P
Sbjct: 67 CPDSSARPRVKSSYSMENANKWSCHMCTYLNWPRAIRCTQCLSQRRTRSPT 117
>sp|Q7W7U0|HEM6_BORPA Coproporphyrinogen-III oxidase, aerobic OS=Bordetella parapertussis
(strain 12822 / ATCC BAA-587 / NCTC 13253) GN=hemF PE=3
SV=1
Length = 303
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 19/113 (16%)
Query: 55 TCQICLTPSSS-FSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPVSGLSSFEDL 113
C+ L P + + P K W C FL N T + G+ F+DL
Sbjct: 151 ACRDALDPHGADYYPRYKQ------W-CDEYFFLKHRNETRG--------IGGIF-FDDL 194
Query: 114 TDPALDSE--LDSSVGSVFLPLQLKACTGKRKIRDQDCDGDFDGFRVTNSVSI 164
DP D+ L SVG FLP L +R + + + DF +R V
Sbjct: 195 NDPGFDASFALTRSVGDSFLPAYLPIVQARRDMPYGERERDFQAYRRGRYVEF 247
>sp|Q7WL80|HEM6_BORBR Coproporphyrinogen-III oxidase, aerobic OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=hemF PE=3 SV=1
Length = 303
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 19/113 (16%)
Query: 55 TCQICLTPSSS-FSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPVSGLSSFEDL 113
C+ L P + + P K W C FL N T + G+ F+DL
Sbjct: 151 ACRDALDPHGADYYPRYKQ------W-CDEYFFLKHRNETRG--------IGGIF-FDDL 194
Query: 114 TDPALDSE--LDSSVGSVFLPLQLKACTGKRKIRDQDCDGDFDGFRVTNSVSI 164
DP D+ L SVG FLP L +R + + + DF +R V
Sbjct: 195 NDPGFDASFALTRSVGDSFLPAYLPIVQARRDMPYGERERDFQAYRRGRYVEF 247
>sp|B2A380|RS2_NATTJ 30S ribosomal protein S2 OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rpsB PE=3
SV=1
Length = 232
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 339 IFCGDMNWDDKLDGKFPLPDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFI 398
+F + W + F ++ + EL E T++ K + R +LD+F+
Sbjct: 89 MFYVNQRWLGGMLTNFQTISKRLNRFYELEQMEEDGTFEVLPKKEVQSLRREHAKLDKFL 148
Query: 399 CSLRDFKIIRIDMIGVEAIPGLLYV----KEKKVRKEMQKLELPVL 440
LR G+E +PG L+V KEK E +KL +P++
Sbjct: 149 GGLR----------GMEDLPGALFVIDPKKEKIAVAEARKLGIPIV 184
>sp|E6ZIJ1|HOIL1_DICLA RanBP-type and C3HC4-type zinc finger-containing protein 1
OS=Dicentrarchus labrax GN=rbck1 PE=3 SV=1
Length = 707
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 70 SKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAP 103
S ++ S WSC +CT++N CE+C+T P
Sbjct: 385 SPNTASTQGWSCPSCTYINKPTRPGCEICSTNRP 418
>sp|Q8TAT6|NPL4_HUMAN Nuclear protein localization protein 4 homolog OS=Homo sapiens
GN=NPLOC4 PE=1 SV=3
Length = 608
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 31 TRGSSMSSWACKKCTFLNSPSRKSTCQICLTPSS 64
T ++ + WAC+ CTF+N P C++C P +
Sbjct: 576 THTATAAMWACQHCTFMNQPG-TGHCEMCSLPRT 608
>sp|Q9VBP9|NPL4_DROME Nuclear protein localization protein 4 homolog OS=Drosophila
melanogaster GN=CG4673 PE=1 SV=3
Length = 652
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 78 TWSCKACTFLNPYNNTSCELCN 99
TW+C CTF+N TSCE+C+
Sbjct: 628 TWTCNHCTFINRGELTSCEICS 649
>sp|Q96EP0|RNF31_HUMAN E3 ubiquitin-protein ligase RNF31 OS=Homo sapiens GN=RNF31 PE=1
SV=1
Length = 1072
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 24/88 (27%)
Query: 39 WACKKCTFLNSPSRKSTCQICLTPSSSFSPPSK---------------------SSVSVP 77
WAC+ CTF N + C IC P + PPS +S
Sbjct: 354 WACQSCTFENEAA-AVLCSICERPRLA-QPPSLVVDSRDAGICLQPLQQGDALLASAQSQ 411
Query: 78 TWSCKACTFLNPYNNTSCELCN-TRAPV 104
W C CTF N C +CN T +P+
Sbjct: 412 VWYCIHCTFCNSSPGWVCVMCNRTSSPI 439
>sp|P60670|NPL4_MOUSE Nuclear protein localization protein 4 homolog OS=Mus musculus
GN=Nploc4 PE=1 SV=3
Length = 608
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 1 MLFLLTNSFLLRFETAISNPKSKNFFTSLRTRGSSMSSWACKKCTFLNSPSRKSTCQICL 60
+LFL+TN ++ + +IS ++RTR ++ K + ST + L
Sbjct: 510 LLFLVTNE-VMPLQDSISL-----LLEAVRTRNEELAQTWKKSEQWATIEQLCSTVGVQL 563
Query: 61 TPSSSFSPPSKSSVSVPT--WSCKACTFLNPYNNTSCELCN 99
F S+ + + W+C+ CTF+N CE+C+
Sbjct: 564 PGLHEFGAVGGSARAATSAMWACQHCTFMNQPGTGHCEMCS 604
>sp|Q9ES54|NPL4_RAT Nuclear protein localization protein 4 homolog OS=Rattus norvegicus
GN=Nploc4 PE=1 SV=3
Length = 608
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 1 MLFLLTNSFLLRFETAISNPKSKNFFTSLRTRGSSMSSWACKKCTFLNSPSRKSTCQICL 60
+LFL+TN ++ + +IS ++RTR ++ K + ST + L
Sbjct: 510 LLFLVTNE-VMPLQDSISL-----LLEAVRTRNEELAQTWKKSEQWATIEQLCSTVGVQL 563
Query: 61 TPSSSFSPPSKSSVSVPT--WSCKACTFLNPYNNTSCELCN 99
F S+ + + W+C+ CTF+N CE+C+
Sbjct: 564 PGLHEFGAVGGSARAATSAMWACQHCTFMNQPGTGHCEMCS 604
>sp|Q9W1A4|TAMO_DROME Protein tamozhennic OS=Drosophila melanogaster GN=tamo PE=1 SV=1
Length = 797
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 79 WSCKACTFLNPYNNTSCELC 98
WSC CTFLNP CE+C
Sbjct: 742 WSCSFCTFLNPDTKRICEMC 761
>sp|A9JTG5|HOIL1_DANRE RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Danio
rerio GN=rbck1 PE=2 SV=1
Length = 714
Score = 32.7 bits (73), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 69 PSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAP 103
P+++S+ P W+C CT++N CE+C+ P
Sbjct: 392 PNRTSIQ-PGWACPTCTYINKPTRPGCEMCSADRP 425
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,030,883
Number of Sequences: 539616
Number of extensions: 7714118
Number of successful extensions: 20478
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 20274
Number of HSP's gapped (non-prelim): 227
length of query: 456
length of database: 191,569,459
effective HSP length: 121
effective length of query: 335
effective length of database: 126,275,923
effective search space: 42302434205
effective search space used: 42302434205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)