Query 012811
Match_columns 456
No_of_seqs 447 out of 2059
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2756 Predicted Mg2+-depende 100.0 5.2E-42 1.1E-46 307.2 9.1 312 111-452 32-348 (349)
2 TIGR03395 sphingomy sphingomye 100.0 3.1E-30 6.8E-35 247.5 21.6 242 186-450 1-282 (283)
3 PRK11756 exonuclease III; Prov 100.0 9.6E-31 2.1E-35 251.1 16.8 228 186-453 1-268 (268)
4 COG3568 ElsH Metal-dependent h 100.0 3.5E-28 7.6E-33 223.8 19.5 226 186-454 10-258 (259)
5 PRK05421 hypothetical protein; 100.0 6.2E-27 1.3E-31 223.4 19.8 216 184-454 42-262 (263)
6 COG0708 XthA Exonuclease III [ 99.9 2.7E-27 5.9E-32 218.6 15.1 221 186-453 1-261 (261)
7 PLN03144 Carbon catabolite rep 99.9 8.3E-26 1.8E-30 232.8 22.3 246 181-454 250-601 (606)
8 TIGR00195 exoDNase_III exodeox 99.9 1.5E-25 3.3E-30 213.4 16.3 222 186-451 1-254 (254)
9 KOG3873 Sphingomyelinase famil 99.9 4.7E-25 1E-29 206.4 16.2 247 184-454 7-293 (422)
10 PRK13911 exodeoxyribonuclease 99.9 1.2E-24 2.7E-29 205.0 19.2 219 186-451 1-249 (250)
11 PTZ00297 pantothenate kinase; 99.9 8.3E-24 1.8E-28 238.4 24.7 244 183-455 8-316 (1452)
12 TIGR00633 xth exodeoxyribonucl 99.9 5E-24 1.1E-28 203.0 16.7 221 186-452 1-255 (255)
13 PRK15251 cytolethal distending 99.8 7.8E-19 1.7E-23 163.4 17.9 188 182-400 21-235 (271)
14 smart00476 DNaseIc deoxyribonu 99.8 2.8E-18 6E-23 162.6 20.1 196 184-404 16-237 (276)
15 KOG2338 Transcriptional effect 99.8 5.6E-18 1.2E-22 166.4 19.2 162 184-354 115-311 (495)
16 PF03372 Exo_endo_phos: Endonu 99.7 1.9E-17 4.1E-22 155.2 11.7 147 189-350 1-171 (249)
17 COG3021 Uncharacterized protei 99.7 2.1E-17 4.5E-22 155.1 10.0 216 182-453 85-307 (309)
18 COG5239 CCR4 mRNA deadenylase, 99.6 4.5E-15 9.7E-20 140.3 12.9 165 185-357 30-264 (378)
19 COG2374 Predicted extracellula 99.6 4.7E-14 1E-18 144.6 15.7 272 173-454 451-789 (798)
20 KOG0620 Glucose-repressible al 99.5 6E-14 1.3E-18 137.7 9.4 248 185-454 19-352 (361)
21 smart00128 IPPc Inositol polyp 99.4 5.4E-11 1.2E-15 116.0 19.3 149 185-349 4-195 (310)
22 KOG0566 Inositol-1,4,5-triphos 99.0 4.5E-09 9.6E-14 110.4 15.3 228 185-455 538-833 (1080)
23 PF00641 zf-RanBP: Zn-finger i 98.6 2.1E-08 4.5E-13 61.7 1.1 27 77-103 3-29 (30)
24 COG5411 Phosphatidylinositol 5 98.5 7.5E-07 1.6E-11 87.2 11.4 57 281-346 153-217 (460)
25 KOG4198 RNA-binding Ran Zn-fin 98.5 3.5E-07 7.6E-12 85.5 6.8 97 37-134 63-199 (280)
26 KOG1294 Apurinic/apyrimidinic 98.4 1.8E-06 3.8E-11 83.9 10.1 232 183-453 61-335 (335)
27 PF00641 zf-RanBP: Zn-finger i 98.4 1.4E-07 3.1E-12 57.9 1.5 27 37-64 3-29 (30)
28 PF14529 Exo_endo_phos_2: Endo 98.4 4.6E-07 9.9E-12 75.3 5.0 85 296-401 1-96 (119)
29 PLN03191 Type I inositol-1,4,5 98.3 1.4E-05 3.1E-10 82.1 13.5 61 281-348 408-482 (621)
30 smart00547 ZnF_RBZ Zinc finger 98.1 1.4E-06 2.9E-11 51.7 1.5 24 78-101 2-25 (26)
31 smart00547 ZnF_RBZ Zinc finger 97.8 7.9E-06 1.7E-10 48.3 1.2 25 37-62 1-25 (26)
32 KOG4198 RNA-binding Ran Zn-fin 97.0 0.00045 9.8E-09 64.9 3.3 70 35-105 137-208 (280)
33 KOG4345 NF-kappa B regulator A 97.0 0.00032 6.9E-09 72.3 2.2 91 14-106 61-213 (774)
34 KOG4477 RING1 interactor RYBP 97.0 0.00025 5.3E-09 61.1 1.1 33 74-106 20-52 (228)
35 PF12773 DZR: Double zinc ribb 96.6 0.0019 4.1E-08 44.7 3.0 50 41-99 1-50 (50)
36 KOG4477 RING1 interactor RYBP 96.5 0.001 2.2E-08 57.4 1.3 29 36-65 22-50 (228)
37 KOG4345 NF-kappa B regulator A 96.1 0.00073 1.6E-08 69.8 -2.0 65 37-102 6-115 (774)
38 PTZ00312 inositol-1,4,5-tripho 96.0 0.025 5.5E-07 53.2 7.5 67 281-348 68-141 (356)
39 PRK14559 putative protein seri 95.4 0.012 2.6E-07 62.8 3.5 52 40-105 3-54 (645)
40 KOG1976 Inositol polyphosphate 94.9 0.043 9.2E-07 51.8 4.9 68 281-349 157-231 (391)
41 PF13248 zf-ribbon_3: zinc-rib 92.4 0.081 1.8E-06 31.0 1.4 23 79-101 3-25 (26)
42 PF13240 zinc_ribbon_2: zinc-r 91.2 0.13 2.9E-06 29.2 1.4 21 81-101 2-22 (23)
43 PF13248 zf-ribbon_3: zinc-rib 88.7 0.25 5.5E-06 28.9 1.2 24 38-62 2-25 (26)
44 KOG2760 Vacuolar sorting prote 87.5 0.29 6.3E-06 48.1 1.6 57 31-87 83-139 (432)
45 cd00350 rubredoxin_like Rubred 87.0 0.4 8.7E-06 29.8 1.5 24 79-102 2-27 (33)
46 COG5100 NPL4 Nuclear pore prot 86.1 0.16 3.5E-06 49.6 -1.0 25 78-102 546-570 (571)
47 cd00350 rubredoxin_like Rubred 83.7 0.8 1.7E-05 28.5 1.7 25 38-62 1-26 (33)
48 COG5100 NPL4 Nuclear pore prot 83.0 0.26 5.7E-06 48.2 -1.0 25 38-63 546-570 (571)
49 KOG1995 Conserved Zn-finger pr 81.4 2.7 5.9E-05 40.9 5.1 32 76-107 216-248 (351)
50 PF13240 zinc_ribbon_2: zinc-r 81.3 0.86 1.9E-05 25.8 1.0 21 41-62 2-22 (23)
51 PRK14714 DNA polymerase II lar 79.3 1.8 3.9E-05 49.0 3.6 53 39-106 668-723 (1337)
52 cd00729 rubredoxin_SM Rubredox 78.4 1.4 3E-05 27.6 1.5 26 38-63 2-28 (34)
53 cd00729 rubredoxin_SM Rubredox 76.7 1.6 3.4E-05 27.4 1.3 26 78-103 2-29 (34)
54 KOG0957 PHD finger protein [Ge 75.1 4 8.6E-05 41.4 4.3 81 17-100 97-190 (707)
55 PF10058 DUF2296: Predicted in 70.8 3.1 6.8E-05 29.1 1.8 13 76-88 42-54 (54)
56 PF12773 DZR: Double zinc ribb 70.4 2.6 5.6E-05 28.8 1.3 23 81-103 1-23 (50)
57 PF14445 Prok-RING_2: Prokaryo 70.1 0.61 1.3E-05 31.5 -1.8 43 37-99 6-48 (57)
58 COG1592 Rubrerythrin [Energy p 69.3 2.6 5.6E-05 36.9 1.4 27 78-104 134-161 (166)
59 cd00730 rubredoxin Rubredoxin; 67.5 3.3 7.1E-05 28.5 1.3 10 76-85 32-41 (50)
60 COG1592 Rubrerythrin [Energy p 67.3 3.1 6.7E-05 36.5 1.5 27 38-64 134-160 (166)
61 PF00301 Rubredoxin: Rubredoxi 61.2 4.5 9.8E-05 27.4 1.1 11 76-86 32-42 (47)
62 KOG0565 Inositol polyphosphate 60.9 27 0.00057 29.8 6.1 59 282-349 48-122 (145)
63 PLN03191 Type I inositol-1,4,5 58.2 7.5 0.00016 41.0 2.6 39 184-226 108-149 (621)
64 PRK14559 putative protein seri 57.7 6 0.00013 42.6 1.9 24 80-103 3-26 (645)
65 PRK04136 rpl40e 50S ribosomal 55.5 9.4 0.0002 25.8 1.8 24 77-100 13-36 (48)
66 COG1773 Rubredoxin [Energy pro 54.7 13 0.00029 26.0 2.5 13 38-50 3-15 (55)
67 COG2093 DNA-directed RNA polym 54.2 6.5 0.00014 28.1 1.0 29 79-107 5-33 (64)
68 PRK04136 rpl40e 50S ribosomal 50.2 12 0.00026 25.3 1.6 25 37-62 13-37 (48)
69 PLN02436 cellulose synthase A 47.3 16 0.00035 41.2 3.1 46 40-103 38-89 (1094)
70 PRK13130 H/ACA RNA-protein com 46.4 23 0.00049 25.0 2.7 31 80-112 7-37 (56)
71 PLN02189 cellulose synthase 45.0 18 0.00039 40.8 3.0 34 53-103 53-87 (1040)
72 PRK04023 DNA polymerase II lar 44.8 21 0.00046 39.9 3.5 51 39-106 627-677 (1121)
73 PF03833 PolC_DP2: DNA polymer 44.7 7.3 0.00016 42.6 0.0 52 38-106 655-706 (900)
74 PF04810 zf-Sec23_Sec24: Sec23 44.5 4.7 0.0001 26.2 -0.9 14 77-90 23-36 (40)
75 PRK06393 rpoE DNA-directed RNA 44.1 10 0.00022 27.5 0.6 21 79-101 6-26 (64)
76 PLN02400 cellulose synthase 44.1 21 0.00046 40.4 3.4 46 40-103 38-89 (1085)
77 PF14569 zf-UDP: Zinc-binding 43.8 6.4 0.00014 29.5 -0.4 48 53-106 9-65 (80)
78 PRK05452 anaerobic nitric oxid 42.6 26 0.00057 36.5 3.7 23 28-50 415-437 (479)
79 PF05191 ADK_lid: Adenylate ki 42.6 18 0.00039 22.9 1.6 23 39-61 2-29 (36)
80 PF10571 UPF0547: Uncharacteri 42.2 16 0.00034 21.4 1.1 21 80-100 2-22 (26)
81 PF07282 OrfB_Zn_ribbon: Putat 40.8 20 0.00043 26.2 1.8 33 48-87 23-55 (69)
82 PRK08351 DNA-directed RNA poly 39.8 16 0.00035 26.2 1.1 21 80-102 5-25 (61)
83 PF03854 zf-P11: P-11 zinc fin 39.2 4 8.8E-05 27.4 -1.8 45 40-105 4-48 (50)
84 KOG0808 Carbon-nitrogen hydrol 37.7 32 0.00068 32.2 2.9 25 202-226 99-123 (387)
85 COG1552 RPL40A Ribosomal prote 37.3 11 0.00025 25.4 0.1 24 79-102 15-38 (50)
86 PRK11788 tetratricopeptide rep 37.0 20 0.00044 35.6 1.9 28 76-103 352-379 (389)
87 KOG1244 Predicted transcriptio 36.9 16 0.00034 34.3 0.9 47 38-85 275-329 (336)
88 PRK03564 formate dehydrogenase 36.6 30 0.00066 33.7 2.8 51 53-103 187-237 (309)
89 COG2093 DNA-directed RNA polym 35.5 17 0.00038 26.0 0.7 24 39-63 5-28 (64)
90 PRK00415 rps27e 30S ribosomal 34.6 26 0.00056 25.0 1.5 29 78-106 11-44 (59)
91 KOG0957 PHD finger protein [Ge 34.3 2.2E+02 0.0048 29.5 8.4 68 36-104 542-614 (707)
92 KOG0825 PHD Zn-finger protein 33.7 21 0.00046 38.5 1.4 55 37-91 214-270 (1134)
93 PLN02638 cellulose synthase A 33.6 28 0.00061 39.4 2.3 24 80-103 46-70 (1079)
94 PRK14873 primosome assembly pr 33.4 26 0.00056 38.2 2.0 52 39-105 384-435 (665)
95 COG4260 Membrane protease subu 33.4 26 0.00056 33.3 1.7 45 28-85 297-341 (345)
96 COG0675 Transposase and inacti 33.1 21 0.00045 34.9 1.2 27 53-91 309-335 (364)
97 PF14446 Prok-RING_1: Prokaryo 32.5 24 0.00053 24.6 1.1 8 54-61 6-13 (54)
98 PRK12496 hypothetical protein; 31.4 29 0.00062 30.5 1.6 25 79-103 128-154 (164)
99 PF00628 PHD: PHD-finger; Int 30.7 5.7 0.00012 27.0 -2.4 46 40-85 1-49 (51)
100 PF12898 Stc1: Stc1 domain; I 30.4 45 0.00097 25.7 2.3 32 74-106 33-64 (84)
101 TIGR00595 priA primosomal prot 30.1 32 0.0007 36.2 2.0 25 77-102 239-263 (505)
102 KOG1995 Conserved Zn-finger pr 29.7 23 0.0005 34.7 0.8 59 37-96 70-143 (351)
103 PLN02915 cellulose synthase A 28.8 36 0.00079 38.5 2.2 24 80-103 44-68 (1044)
104 PRK12496 hypothetical protein; 28.5 34 0.00073 30.0 1.6 25 37-62 124-152 (164)
105 TIGR01562 FdhE formate dehydro 27.9 56 0.0012 31.8 3.1 53 53-105 184-237 (305)
106 COG1198 PriA Primosomal protei 27.4 39 0.00085 37.0 2.1 49 39-101 436-484 (730)
107 PRK14873 primosome assembly pr 25.6 48 0.001 36.1 2.4 34 53-102 383-420 (665)
108 KOG0955 PHD finger protein BR1 25.3 45 0.00098 38.0 2.1 50 48-100 232-281 (1051)
109 COG1198 PriA Primosomal protei 25.1 55 0.0012 35.9 2.7 38 53-106 435-476 (730)
110 smart00249 PHD PHD zinc finger 24.9 79 0.0017 20.2 2.6 43 41-84 2-47 (47)
111 KOG1312 DHHC-type Zn-finger pr 24.3 30 0.00065 32.9 0.5 22 79-100 149-170 (341)
112 KOG2041 WD40 repeat protein [G 24.3 92 0.002 33.7 4.0 65 37-102 1116-1184(1189)
113 cd07585 nitrilase_7 Uncharacte 24.2 99 0.0021 28.9 4.1 38 186-226 2-42 (261)
114 cd07393 MPP_DR1119 Deinococcus 23.9 1.5E+02 0.0032 27.4 5.1 50 296-346 2-53 (232)
115 PRK05452 anaerobic nitric oxid 23.9 44 0.00096 34.8 1.7 12 92-103 458-469 (479)
116 COG1997 RPL43A Ribosomal prote 23.8 43 0.00093 25.8 1.1 28 53-87 35-62 (89)
117 COG1998 RPS31 Ribosomal protei 23.8 40 0.00087 23.0 0.9 11 77-87 36-46 (51)
118 PF02318 FYVE_2: FYVE-type zin 21.8 37 0.00079 27.9 0.5 44 40-102 56-104 (118)
119 cd07197 nitrilase Nitrilase su 21.3 96 0.0021 28.6 3.3 37 187-226 2-41 (253)
120 COG5141 PHD zinc finger-contai 21.1 36 0.00078 34.8 0.4 57 40-99 195-254 (669)
121 PF14952 zf-tcix: Putative tre 21.1 53 0.0011 21.8 1.0 18 79-96 12-29 (44)
122 COG2995 PqiA Uncharacterized p 20.8 66 0.0014 32.2 2.1 38 25-62 206-244 (418)
123 cd07577 Ph0642_like Pyrococcus 20.1 1.5E+02 0.0032 27.7 4.4 38 186-226 2-39 (259)
No 1
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-42 Score=307.21 Aligned_cols=312 Identities=25% Similarity=0.303 Sum_probs=245.0
Q ss_pred CCCCCCCC-CCccccccccccccCccccccCCCCCCCCCCCCCCCCcceecccccCCCCC-CCCCCCCCC--CCCCCCce
Q 012811 111 EDLTDPAL-DSELDSSVGSVFLPLQLKACTGKRKIRDQDCDGDFDGFRVTNSVSIKDDTT-SGPSADNSE--SGAVSGSL 186 (456)
Q Consensus 111 ~~~~d~~~-~~d~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~l 186 (456)
-++.+..| ..+.+.++|+.|.|++ +|-+..+ ++... ++++....+.|. .......+- .......+
T Consensus 32 fa~~~s~dea~aq~~l~~~dw~~~r--al~~~~~---se~~s------E~~~~~~~~~e~~t~s~~s~~~T~ed~~g~~~ 100 (349)
T KOG2756|consen 32 FASVASCDAAVAQCFLAENDWEMER--ALNSYFE---PETIS------EPKTYVDLTNEETTDSTTSKISTSEDTQGSMF 100 (349)
T ss_pred HHHhhhhHHHhHHHHhhcchhHHHH--HHHhhcC---ceeec------cchhhhhccccccccccccccCChhhhcccEE
Confidence 34444444 6788899999999998 4444322 11111 113333333321 111111111 11222468
Q ss_pred EEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhHHHHHHhCCCccceEEecCCCCCCCCCeEEEEEEeeec
Q 012811 187 KILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQLSKLQA 266 (456)
Q Consensus 187 rV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ailSr~pi 266 (456)
.+++||+.++...+...|+.+++.+|+.++|||||||||.+.++.+|.+. ...|.++.+ ..+...++.+++.||+.+
T Consensus 101 S~~~WnidgLdln~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~~~~K~--~s~y~i~~~-~~~~~~~~~~l~~s~~~V 177 (349)
T KOG2756|consen 101 SLITWNIDGLDLNNLSERMRAVCHYLALYSPDVIFLQEVIPPYYSYLKKR--SSNYEIITG-HEEGYFTAIMLKKSRVKV 177 (349)
T ss_pred EEEEeeccccccchHHHHHHHHHHHHHhcCCCEEEEeecCchhhHHHHHh--hhheeEEEe-ccceeeeeeeeehhhcCc
Confidence 89999998887666789999999999999999999999999999999982 234444333 323334445666789999
Q ss_pred ceeeEeeCCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhcCCCEEEEccCCC
Q 012811 267 KSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPNVIFCGDMNW 346 (456)
Q Consensus 267 ~~~~~~~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~~~pvIl~GDFN~ 346 (456)
.+.+.++|+++.|+|.+.++++.++ |.++.+.++||.+.+++++.|++++. .|+.|++++++.+ .+..||++||+|.
T Consensus 178 ks~~~i~F~NS~M~R~L~I~Ev~v~-G~Kl~l~tsHLEStr~h~P~r~~qF~-~~~~k~~EaIe~l-PnA~ViFGGD~Nl 254 (349)
T KOG2756|consen 178 KSQEIIPFPNSKMMRNLLIVEVNVS-GNKLCLMTSHLESTRGHAPERMNQFK-MVLKKMQEAIESL-PNATVIFGGDTNL 254 (349)
T ss_pred cccceeccCcchhhheeEEEEEeec-CceEEEEeccccCCCCCChHHHHHHH-HHHHHHHHHHHhC-CCceEEEcCcccc
Confidence 9999999999999999999999999 77899999999999999999988876 8999999999887 6788999999999
Q ss_pred CCCCCCCcCCCCCccccccccc-CCCCCccccCCCCccccCCCccCCCccEEEEecCCCccceEEEeeccccCCchhhhh
Q 012811 347 DDKLDGKFPLPDGWVDAWTELR-PGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGLLYVKE 425 (456)
Q Consensus 347 ~~~~~~~~~l~~gl~D~~~~~~-~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~~g~d~~p~~~~~~~ 425 (456)
.+.+...++++.+++|+|..++ |+..++||++..|+++.|++....|+|+||++.. ++.|....|.+.++++
T Consensus 255 rD~ev~r~~lPD~~vDvWE~lg~p~~~~FTwDT~~N~nl~G~~a~k~RfDRi~~r~~-------~~~G~~~~~~l~l~g~ 327 (349)
T KOG2756|consen 255 RDREVTRCGLPDNIVDVWEFLGKPKHCQFTWDTQMNSNLGGTAACKLRFDRIFFRAA-------AEEGHIIPRSLDLLGL 327 (349)
T ss_pred hhhhcccCCCCchHHHHHHHhCCCCcCceeeecccCcccchhHHHHHHHHHHhhhhh-------hhcCCcCccccchhhh
Confidence 9999999999999999999998 8899999999999999999899999999999842 5566667788888888
Q ss_pred hhhhhhhhccCCCCCccCCcceeEEEE
Q 012811 426 KKVRKEMQKLELPVLPSDHYGLLLTIS 452 (456)
Q Consensus 426 ~~~~~~~~~~~~~~~~SDH~pV~~~~~ 452 (456)
+++|. ++++||||++|.++|.
T Consensus 328 ~kiRg------c~~fPSDHwgll~Tl~ 348 (349)
T KOG2756|consen 328 EKLRG------CGRFPSDHWGLLCTLD 348 (349)
T ss_pred hhhcc------CCCCCcccceeeeecc
Confidence 88775 6889999999999986
No 2
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.97 E-value=3.1e-30 Score=247.54 Aligned_cols=242 Identities=17% Similarity=0.112 Sum_probs=168.9
Q ss_pred eEEEEEeccCCC-----CCChhhHHHHHHHHHhhCCCcEEEEeccCHhH-----HHHHHhCCCccceEEec-CCC-----
Q 012811 186 LKILSYNVWFRE-----DLEMHPRMKTIGDLIQLHSPDIICFQEITPNI-----YDILCKSSWWKGYRCSV-PNE----- 249 (456)
Q Consensus 186 lrV~T~Nv~~~~-----~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~-----~~~L~~~~~~~~y~~~~-~~~----- 249 (456)
||||||||+... ...+..|.+.|++.+...+||||+||||.... .+.|.. .++|.... +..
T Consensus 1 lkVmtyNv~~l~~~~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~---~yp~~~~~~g~~~~g~~ 77 (283)
T TIGR03395 1 IKILSHNVYMLSTNLYPNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLRE---EYPYQTDVIGRSKKGWD 77 (283)
T ss_pred CeEEEEEeeeecccccCCccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHh---hCCceEeecccccccch
Confidence 699999999643 23468999999999999999999999998432 233333 24444321 111
Q ss_pred -------CCCCCCeEEEEEEeeecceeeEeeCCCCC-----CCCceEEEEEEeCCcceEEEEEeccCCCCCCCCcccccc
Q 012811 250 -------MADSRGYFCMQLSKLQAKSFTCEPFRNSI-----MGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMF 317 (456)
Q Consensus 250 -------~~~~~~~g~ailSr~pi~~~~~~~~~~~~-----~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~ 317 (456)
......+|++||||+||.....+.|+... ..|+++.++|+++ |+.+.|++|||.+....... ...
T Consensus 78 ~~~g~~~~~~~~~~G~~iLSr~Pi~~~~~~~f~~~~~~d~~~~kg~l~a~i~~~-g~~~~v~~THL~~~~~~~~~--~~~ 154 (283)
T TIGR03395 78 KTLGNYSSSALEDGGVAIVSKWPIEEKIQYIFNKGCGADNLSNKGFAYVKINKN-GKKFHVIGTHLQAQDSMCSK--LGP 154 (283)
T ss_pred hccccccccCccCCEEEEEECCCccccEEEEccCCCCCccccCCceEEEEEecC-CeEEEEEEeCCCCCcccccc--ccc
Confidence 01123578999999999988777775322 2488999999987 78999999999986432110 011
Q ss_pred HHHHHHHHHHHHHHhhc-----CCCEEEEccCCCCCCCCCCcCCCCCcccccccccCC-----CCCccccCCCCccccCC
Q 012811 318 SKERVEQAKEAINLLKK-----NPNVIFCGDMNWDDKLDGKFPLPDGWVDAWTELRPG-----ENGWTYDTKSNKMLSGN 387 (456)
Q Consensus 318 ~~~R~~Q~~~l~~~l~~-----~~pvIl~GDFN~~~~~~~~~~l~~gl~D~~~~~~~~-----~~~~T~~~~~~~~~~~~ 387 (456)
...|..|+++|.+++.. +.|+||+||||+.+.+..+. +.+..++.. +.++||+...|.+....
T Consensus 155 ~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~s~~~~-------~ml~~l~~~~p~~~g~~~T~d~~~N~~a~~~ 227 (283)
T TIGR03395 155 ASIRANQLNEIQDFIDSKNIPKDETVLIGGDLNVNKGSNEYH-------DMFKTLNVSEPRYVGVPATWDATTNSIAKYY 227 (283)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCceEEEEeeCCCCCCCHHHH-------HHHHHhcccCCCcCCCCCCcCCCcCchhhhh
Confidence 47899999999999964 45799999999988765433 333333322 34669999888876432
Q ss_pred --CccCCCccEEEEecCCCccceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEE
Q 012811 388 --RTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLT 450 (456)
Q Consensus 388 --~~~~~rID~I~~s~~~~~~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~ 450 (456)
.....||||||++...+++...+..+.+.++. + .+... .....+||||||++.
T Consensus 228 ~~~~~~~~lDyvl~~~~~~~p~~~~~~~~~~~~~--~----~~~~~----~~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 228 YPKEEPEYLDYIFVSKSHAQPPVWQNKVLDPKSV--T----SWFKK----YTYDDFSDHYPVYGF 282 (283)
T ss_pred cCCCCcceEEEEEEECCCCCCccccceEEecccc--c----ccccc----ccccccccccceeee
Confidence 24567999999998888888888877776652 1 11000 124579999999875
No 3
>PRK11756 exonuclease III; Provisional
Probab=99.97 E-value=9.6e-31 Score=251.12 Aligned_cols=228 Identities=18% Similarity=0.188 Sum_probs=152.5
Q ss_pred eEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhH----HHHHHhCCCccceEEecCCCCCCCCCeEEEEE
Q 012811 186 LKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNI----YDILCKSSWWKGYRCSVPNEMADSRGYFCMQL 261 (456)
Q Consensus 186 lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~----~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ail 261 (456)
|||+||||++. ..+..+|+++|++.+||||||||+.... ...+.. .+|++.+.. ....+|++||
T Consensus 1 mri~T~Nv~g~-----~~~~~~i~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~----~gy~~~~~~---~~~~~Gvail 68 (268)
T PRK11756 1 MKFVSFNINGL-----RARPHQLEAIIEKHQPDVIGLQETKVHDEMFPLEEVEA----LGYHVFYHG---QKGHYGVALL 68 (268)
T ss_pred CEEEEEEcCCH-----HHHHHHHHHHHHhcCCCEEEEEecccccccCCHHHHHh----cCCEEEEeC---CCCCCEEEEE
Confidence 79999999875 3577889999999999999999986221 222222 344433322 2345899999
Q ss_pred EeeecceeeEeeCCC--CCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc----C
Q 012811 262 SKLQAKSFTCEPFRN--SIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK----N 335 (456)
Q Consensus 262 Sr~pi~~~~~~~~~~--~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~----~ 335 (456)
||+|+..... .++. ....|.++.+++..++| .+.|+|+|++....... ......|.++++.|.+++.+ .
T Consensus 69 Sr~p~~~~~~-~~~~~~~~~~~r~l~~~i~~~~g-~~~v~n~y~P~~~~~~~---~~~~~~r~~~~~~l~~~l~~~~~~~ 143 (268)
T PRK11756 69 SKQTPIAVRK-GFPTDDEEAQRRIIMATIPTPNG-NLTVINGYFPQGESRDH---PTKFPAKRQFYQDLQNYLETELSPD 143 (268)
T ss_pred ECCChHHeEE-CCCCccccccCCEEEEEEEcCCC-CEEEEEEEecCCCCCCc---chhHHHHHHHHHHHHHHHHHHhccC
Confidence 9999876543 2332 12357888899988755 59999999987643111 01123466677777766643 6
Q ss_pred CCEEEEccCCCCCCCCCCc---------------------------CCCCCcccccccccCC-CCCccccCCCCccccCC
Q 012811 336 PNVIFCGDMNWDDKLDGKF---------------------------PLPDGWVDAWTELRPG-ENGWTYDTKSNKMLSGN 387 (456)
Q Consensus 336 ~pvIl~GDFN~~~~~~~~~---------------------------~l~~gl~D~~~~~~~~-~~~~T~~~~~~~~~~~~ 387 (456)
.|+|||||||+.+.+.... .+..+|+|+|+.++|. ...|||........ .
T Consensus 144 ~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~l~D~~R~~~p~~~~~~T~~~~~~~~~--~ 221 (268)
T PRK11756 144 NPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWLDRLMDWGLVDTFRQLNPDVNDRFSWFDYRSKGF--D 221 (268)
T ss_pred CCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHHHHHHHHHHhCCcEeehhhhCCCCCCcccCcCCccccc--c
Confidence 7999999999877544110 0234899999999987 68899975533211 1
Q ss_pred CccCCCccEEEEecCCCc--cceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEe
Q 012811 388 RTLQKRLDRFICSLRDFK--IIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISN 453 (456)
Q Consensus 388 ~~~~~rID~I~~s~~~~~--~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~ 453 (456)
.+.+.||||||++. .+. +....+... . ....++|||+||+++|++
T Consensus 222 ~~~g~RIDyi~~s~-~~~~~v~~~~i~~~-~-------------------~~~~~~SDH~PV~~~~~~ 268 (268)
T PRK11756 222 DNRGLRIDLILATQ-PLAERCVETGIDYD-I-------------------RGMEKPSDHAPIWATFKL 268 (268)
T ss_pred cCCceEEEEEEeCH-HHHhhheEeEEeHH-H-------------------hCCCCCCCcccEEEEEeC
Confidence 13578999999984 333 445544211 0 113469999999999974
No 4
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.96 E-value=3.5e-28 Score=223.85 Aligned_cols=226 Identities=20% Similarity=0.256 Sum_probs=161.4
Q ss_pred eEEEEEeccCCCCC-ChhhHHHHHHHHHhhCCCcEEEEeccCHh----------HHHHHHhCCCcc-ceEEecCCCCCCC
Q 012811 186 LKILSYNVWFREDL-EMHPRMKTIGDLIQLHSPDIICFQEITPN----------IYDILCKSSWWK-GYRCSVPNEMADS 253 (456)
Q Consensus 186 lrV~T~Nv~~~~~~-~~~~r~~~i~~~I~~~~pDII~LQEv~~~----------~~~~L~~~~~~~-~y~~~~~~~~~~~ 253 (456)
++|+||||++.... ++..+...+++.|.+..+|||+|||+... +...+......+ .|+-.........
T Consensus 10 ~~v~TyNih~~~~~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 89 (259)
T COG3568 10 FKVLTYNIHKGFGAFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSGAAFGAVYGE 89 (259)
T ss_pred eEEEEEEEEEccCccCceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCCccccchhhhhhhccc
Confidence 89999999998765 77888999999999999999999999852 122222222111 1111111011234
Q ss_pred CCeEEEEEEeeecceeeEeeCCC--CCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHH-
Q 012811 254 RGYFCMQLSKLQAKSFTCEPFRN--SIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAIN- 330 (456)
Q Consensus 254 ~~~g~ailSr~pi~~~~~~~~~~--~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~- 330 (456)
..+|++||||+|+.....+.++. ..+.|++++++++.++|+++.|+++||... ...|.+|++.|.+
T Consensus 90 ~~~GnaiLS~~pi~~v~~~~lp~~~~~~~Rgal~a~~~~~~g~~l~V~~~HL~l~-----------~~~R~~Q~~~L~~~ 158 (259)
T COG3568 90 GQHGNAILSRLPIRDVENLALPDPTGLEPRGALLAEIELPGGKPLRVINAHLGLS-----------EESRLRQAAALLAL 158 (259)
T ss_pred ceeeeEEEecCcccchhhccCCCCCCCCCceeEEEEEEcCCCCEEEEEEEecccc-----------HHHHHHHHHHHHhh
Confidence 56899999999999998888875 234799999999997678999999999844 4789999999999
Q ss_pred -HhhcCCCEEEEccCCCCCCCCCCcCCCC-------CcccccccccCCCCCccccCCCCccccCCCccCCCccEEEEecC
Q 012811 331 -LLKKNPNVIFCGDMNWDDKLDGKFPLPD-------GWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLR 402 (456)
Q Consensus 331 -~l~~~~pvIl~GDFN~~~~~~~~~~l~~-------gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~ 402 (456)
.+.+..|+|+|||||..+.+..+..... .+.+++...++ ....||+.+ .+..+|||||++ .
T Consensus 159 ~~l~~~~p~vl~GDFN~~p~s~~yr~~~~~~~~~~~~~~~~~~~a~~-~~~~tfps~---------~p~lriD~Ifvs-~ 227 (259)
T COG3568 159 AGLPALNPTVLMGDFNNEPGSAEYRLAARSPLNAQAALTGAFAPAVG-RTIRTFPSN---------TPLLRLDRIFVS-K 227 (259)
T ss_pred ccCcccCceEEEccCCCCCCCccceeccCCchhhccccccccCcccC-cccCCCCCC---------CccccccEEEec-C
Confidence 4455669999999999999988864322 22233322211 002366665 455799999999 4
Q ss_pred CCccceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEec
Q 012811 403 DFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 454 (456)
Q Consensus 403 ~~~~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~~ 454 (456)
.+.+.+.++. .++. ....|||+||.++|.+.
T Consensus 228 ~~~i~~~~v~-~~~~--------------------a~~aSDHlPl~aeL~~~ 258 (259)
T COG3568 228 ELAIRSVHVL-TDRL--------------------ARVASDHLPLLAELRLK 258 (259)
T ss_pred cccEEEEEee-cCCC--------------------ccccccccceEEEEecC
Confidence 6777777774 2221 24589999999999864
No 5
>PRK05421 hypothetical protein; Provisional
Probab=99.95 E-value=6.2e-27 Score=223.44 Aligned_cols=216 Identities=15% Similarity=0.121 Sum_probs=136.3
Q ss_pred CceEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhH-HHHHHhCC-CccceEEecCCCCCCCCCeEEEEE
Q 012811 184 GSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNI-YDILCKSS-WWKGYRCSVPNEMADSRGYFCMQL 261 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~-~~~L~~~~-~~~~y~~~~~~~~~~~~~~g~ail 261 (456)
++||||||||++..... .....+.| ..+|||||||||+... ...+.... +.+.|..... .....+|++||
T Consensus 42 ~~lri~t~NI~~~~~~~----~~~~l~~l-~~~~DiI~LQEv~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~GvaiL 113 (263)
T PRK05421 42 ERLRLLVWNIYKQQRAG----WLSVLKNL-GKDADLVLLQEAQTTPELVQFATANYLAADQAPAFV---LPQHPSGVMTL 113 (263)
T ss_pred CceeEEEEEcccccccc----HHHHHHHh-ccCCCEEEEEecccCcchHHHhhcccchHHhccccc---cCCCccceeEe
Confidence 68999999999987532 23344444 8899999999997332 22222222 1111221111 12346899999
Q ss_pred EeeecceeeEeeCCC--CCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc-CCCE
Q 012811 262 SKLQAKSFTCEPFRN--SIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK-NPNV 338 (456)
Q Consensus 262 Sr~pi~~~~~~~~~~--~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~-~~pv 338 (456)
||+|+.....+.... ....|.++++++++++|+.+.|+|+|+.+... ....|..|++.+.+++.. ..|+
T Consensus 114 SR~pi~~~~~~~~~~~~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~--------~~~~r~~q~~~l~~~~~~~~~p~ 185 (263)
T PRK05421 114 SKAHPVYCCPLREREPWLRLPKSALITEYPLPNGRTLLVVNIHAINFSL--------GVDVYSKQLEPIGDQIAHHSGPV 185 (263)
T ss_pred eecccceeeccCCCCccccCcceeEEEEEEeCCCCEEEEEEECccccCc--------ChHHHHHHHHHHHHHHHhCCCCE
Confidence 999998765543222 12458889999999777889999999986532 135688999999998876 5689
Q ss_pred EEEccCCCCCCCCCCcCCCCCcccccccccCCCCCccccCCCCccccCCCccCCCccEEEEecCCCccceEEEeeccccC
Q 012811 339 IFCGDMNWDDKLDGKFPLPDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIP 418 (456)
Q Consensus 339 Il~GDFN~~~~~~~~~~l~~gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~~g~d~~p 418 (456)
|+|||||+.+.... ..+.+.....+.. ..||...... .....+|||||++ .+.+.+++++
T Consensus 186 Il~GDFN~~~~~~~-----~~l~~~~~~~~l~--~~~~~~~~~~-----~~~~~~ID~I~~~--~~~v~~~~v~------ 245 (263)
T PRK05421 186 ILAGDFNTWSRKRM-----NALKRFARELGLK--EVRFTDDQRR-----RAFGRPLDFVFYR--GLNVSKASVL------ 245 (263)
T ss_pred EEEcccccCcccch-----HHHHHHHHHcCCC--ccCcCCcccc-----cccCCCcceEEEC--CcEEEEEEcC------
Confidence 99999997653221 0111211111111 1123222110 0124799999985 4555555552
Q ss_pred CchhhhhhhhhhhhhccCCCCCccCCcceeEEEEec
Q 012811 419 GLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 454 (456)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~~ 454 (456)
....|||+||+++|++.
T Consensus 246 -------------------~~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 246 -------------------VTRASDHNPLLVEFSLK 262 (263)
T ss_pred -------------------CCCCCCccCEEEEEEec
Confidence 12589999999999875
No 6
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.7e-27 Score=218.56 Aligned_cols=221 Identities=22% Similarity=0.280 Sum_probs=148.5
Q ss_pred eEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhH----HHHHHhCCCccce-EEecCCCCCCCCCeEEEE
Q 012811 186 LKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNI----YDILCKSSWWKGY-RCSVPNEMADSRGYFCMQ 260 (456)
Q Consensus 186 lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~----~~~L~~~~~~~~y-~~~~~~~~~~~~~~g~ai 260 (456)
|||+||||++.+ .|+..+.+++.+.+||||||||+.-.. ...+.. .+| ++..... ++..||||
T Consensus 1 mkI~SwNVNgiR-----ar~~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~----~GY~~~~~~gq---KgysGVai 68 (261)
T COG0708 1 MKIASWNVNGLR-----ARLKKLLDWLEEEQPDVLCLQETKAQDEQFPREELEA----LGYHHVFNHGQ---KGYSGVAI 68 (261)
T ss_pred CeeEEEehhhHH-----HHHHHHHHHHHHhCCCEEEEEecccCcccCCHhHHhh----CCceEEEecCc---CCcceEEE
Confidence 799999999984 788889999999999999999998332 333433 456 4333322 45578999
Q ss_pred EEeeecceeeEeeCCC----CCCCCceEEEEEEeCCcceEEEEEeccCCCCC-CCCccccccHHHHHHHHHHHHHHhhc-
Q 012811 261 LSKLQAKSFTCEPFRN----SIMGRELCVAEVEVQGKKPLVVATSHLESPCP-GPPTWDQMFSKERVEQAKEAINLLKK- 334 (456)
Q Consensus 261 lSr~pi~~~~~~~~~~----~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~-~~~~~~~~~~~~R~~Q~~~l~~~l~~- 334 (456)
+||.++..... .++. ...+|.+ ...++ + +.|+|++++.+.. +.+++ ..+...++.+.+++.+
T Consensus 69 lsr~~~~~v~~-g~~~~~~~d~e~R~I---~a~~~-~--~~v~~~Y~PnG~~~~~~k~-----~yKl~f~~~l~~~l~~l 136 (261)
T COG0708 69 LSKKPPDDVRR-GFPGEEEDDEEGRVI---EAEFD-G--FRVINLYFPNGSSIGLEKF-----DYKLRFLDALRNYLEEL 136 (261)
T ss_pred EEccCchhhhc-CCCCCccccccCcEE---EEEEC-C--EEEEEEEcCCCCCCCCcch-----HHHHHHHHHHHHHHHHH
Confidence 99987764332 2332 2234543 34455 3 9999999999976 44432 4566666666666644
Q ss_pred ---CCCEEEEccCCCCCCCCC---C-----------c----------CCCCCcccccccccCCCCCccccCCCCccccCC
Q 012811 335 ---NPNVIFCGDMNWDDKLDG---K-----------F----------PLPDGWVDAWTELRPGENGWTYDTKSNKMLSGN 387 (456)
Q Consensus 335 ---~~pvIl~GDFN~~~~~~~---~-----------~----------~l~~gl~D~~~~~~~~~~~~T~~~~~~~~~~~~ 387 (456)
+.|+|+|||||..+.+.. . + .+..||+|+|+.++|....|||+.........
T Consensus 137 ~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~~D~~R~~~p~~~~YTwW~YR~~~~~~- 215 (261)
T COG0708 137 LKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRLFHPEPEKYTWWDYRANAARR- 215 (261)
T ss_pred hhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHHHHHHHHHHHcchhhhhHhhCCCCCcccccccccchhhh-
Confidence 689999999998764321 0 0 03458999999999888889998875432222
Q ss_pred CccCCCccEEEEecCCC--ccceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEe
Q 012811 388 RTLQKRLDRFICSLRDF--KIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISN 453 (456)
Q Consensus 388 ~~~~~rID~I~~s~~~~--~~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~ 453 (456)
+.++||||||+|+ .+ ++.+..+. .++. ....||||+||+++|.+
T Consensus 216 -n~G~RID~~l~S~-~L~~~~~~a~I~-----------------~~~r---g~e~pSDHaPV~~e~~~ 261 (261)
T COG0708 216 -NRGWRIDYILVSP-ALADRLKDAGID-----------------REVR---GWEKPSDHAPVWVELDL 261 (261)
T ss_pred -cCceeEEEEEeCH-HHHHHHHhcCcc-----------------HHHh---cCCCCCCcCcEEEEecC
Confidence 3679999999995 22 12333331 0111 02358999999999864
No 7
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.94 E-value=8.3e-26 Score=232.79 Aligned_cols=246 Identities=19% Similarity=0.245 Sum_probs=157.6
Q ss_pred CCCCceEEEEEeccCCC-------------CCChhhHHHHHHHHHhhCCCcEEEEeccCHhHHH-HHHhCCCccceEEec
Q 012811 181 AVSGSLKILSYNVWFRE-------------DLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYD-ILCKSSWWKGYRCSV 246 (456)
Q Consensus 181 ~~~~~lrV~T~Nv~~~~-------------~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~-~L~~~~~~~~y~~~~ 246 (456)
....+||||||||+... ...|..|...|++.|..++|||||||||....++ .|...+..++|...+
T Consensus 250 ~~~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~ 329 (606)
T PLN03144 250 SSAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQALY 329 (606)
T ss_pred CCCCCEEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceEEE
Confidence 34568999999998542 3468999999999999999999999999866543 444433335666544
Q ss_pred CCCCC------CCCCeEEEEEE---eeecceeeEeeCCCC----------------CCCC-----ceEEEEEEeC-----
Q 012811 247 PNEMA------DSRGYFCMQLS---KLQAKSFTCEPFRNS----------------IMGR-----ELCVAEVEVQ----- 291 (456)
Q Consensus 247 ~~~~~------~~~~~g~ailS---r~pi~~~~~~~~~~~----------------~~~R-----~~~~~~i~~~----- 291 (456)
....+ .....|++||- ||.+.+...+.|... ...| .++++.++..
T Consensus 330 ~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~~~~~ 409 (606)
T PLN03144 330 KKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKFGNQG 409 (606)
T ss_pred eCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEEEEEEEeccccc
Confidence 33211 12457899884 577776655543211 0113 3455555442
Q ss_pred -----CcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc-----CCCEEEEccCCCCCCCCCCcCCCCCcc
Q 012811 292 -----GKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK-----NPNVIFCGDMNWDDKLDGKFPLPDGWV 361 (456)
Q Consensus 292 -----~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~-----~~pvIl~GDFN~~~~~~~~~~l~~gl~ 361 (456)
.++.|.|+||||.+.. .....|..|+..|++.|.+ +.|+|||||||+.|.+..+..+..|..
T Consensus 410 ~~~~~~~~~l~VaNTHL~~~p--------~~~dvRl~Q~~~Ll~~l~~~~~~~~~PvIlcGDFNS~P~S~vy~lLt~G~v 481 (606)
T PLN03144 410 ADNGGKRQLLCVANTHIHANQ--------ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHCLLATGKV 481 (606)
T ss_pred ccCCCCccEEEEEEeeeccCC--------ccchhHHHHHHHHHHHHHHHhhcCCCceEEeccCCCCCCChhhhhhhcCCc
Confidence 1357999999996652 2356899999999888865 569999999999998877765443322
Q ss_pred ----------------------------ccccccc-------------------CCCCCccccCCCCccccCCCccCCCc
Q 012811 362 ----------------------------DAWTELR-------------------PGENGWTYDTKSNKMLSGNRTLQKRL 394 (456)
Q Consensus 362 ----------------------------D~~~~~~-------------------~~~~~~T~~~~~~~~~~~~~~~~~rI 394 (456)
.||.... .+++.||=. ..+....|
T Consensus 482 ~~~h~d~~~~~~~~~~~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~fTNy---------t~~F~gtl 552 (606)
T PLN03144 482 DPLHPDLAVDPLGILRPASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLFTNC---------TRDFIGTL 552 (606)
T ss_pred CCCchhhccCccccccccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCceee---------cCCcceeE
Confidence 2222110 011222211 12566889
Q ss_pred cEEEEecCCCccceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEec
Q 012811 395 DRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 454 (456)
Q Consensus 395 D~I~~s~~~~~~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~~ 454 (456)
||||++...+++..+-- .|...++ .....+|...+||||.+|+|+|++.
T Consensus 553 DYIfys~~~L~v~~vL~-----lp~e~~l------~~~~gLPn~~~PSDHI~L~AeF~~~ 601 (606)
T PLN03144 553 DYIFYTADSLTVESLLE-----LLDEESL------RKDTALPSPEWSSDHIALLAEFRCK 601 (606)
T ss_pred EEEEEcCCCceEEeecC-----CCCHHHh------cccCCCCCCCCCCccccEeEEEEec
Confidence 99999965555543221 1211111 1123578889999999999999985
No 8
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.93 E-value=1.5e-25 Score=213.44 Aligned_cols=222 Identities=21% Similarity=0.250 Sum_probs=141.1
Q ss_pred eEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhH---HHHHHhCCCccceEEecCCCCCCCCCeEEEEEE
Q 012811 186 LKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNI---YDILCKSSWWKGYRCSVPNEMADSRGYFCMQLS 262 (456)
Q Consensus 186 lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~---~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ailS 262 (456)
|||+||||++.. .+..++.++|..++||||||||+.... ...+... .+|.....+. .+.+|++|++
T Consensus 1 mri~t~Ni~g~~-----~~~~~~~~~l~~~~~DIi~LQE~~~~~~~~~~~~~~~---~g~~~~~~~~---~g~~Gvails 69 (254)
T TIGR00195 1 MKIISWNVNGLR-----ARLHKGLAWLKENQPDVLCLQETKVQDEQFPLEPFHK---EGYHVFFSGQ---KGYSGVAIFS 69 (254)
T ss_pred CEEEEEEcCcHH-----HhHHHHHHHHHhcCCCEEEEEecccchhhCCHHHhhc---CCcEEEEecC---CCcceEEEEE
Confidence 799999998763 455668999999999999999997432 2222222 3444333322 3457899999
Q ss_pred eeecceeeE-eeCCC-CCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc----CC
Q 012811 263 KLQAKSFTC-EPFRN-SIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK----NP 336 (456)
Q Consensus 263 r~pi~~~~~-~~~~~-~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~----~~ 336 (456)
|.+...... +.... ...+| ++. +++. .+.|+|+|+++..... ......|..+++.+.+++.+ +.
T Consensus 70 r~~~~~~~~~~~~~~~~~~~r-~i~--~~~~---~~~l~~~~~p~~~~~~----~~~~~~r~~~~~~l~~~~~~~~~~~~ 139 (254)
T TIGR00195 70 KEEPLSVRRGFGVEEEDAEGR-IIM--AEFD---SFLVINGYFPNGSRDD----SEKLPYKLQWLEALQNYLEKLVDKDK 139 (254)
T ss_pred cCCcceEEECCCCcccccCCC-EEE--EEEC---CEEEEEEEccCCCCCC----CccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 954333322 22111 12345 333 3444 3899999999853321 11235577788888877754 57
Q ss_pred CEEEEccCCCCCCCCC--------------------Cc-CCCCCcccccccccCCCCCccccCCCCccccCCCccCCCcc
Q 012811 337 NVIFCGDMNWDDKLDG--------------------KF-PLPDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLD 395 (456)
Q Consensus 337 pvIl~GDFN~~~~~~~--------------------~~-~l~~gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~rID 395 (456)
|+|+|||||..+.... .. .+..+|.|+|+..++.+..|||........ ......|||
T Consensus 140 pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~l~~~~l~D~~r~~~~~~~~~T~~~~~~~~~--~~~~g~RID 217 (254)
T TIGR00195 140 PVLICGDMNIAPTEIDLHSPDENRNHTGFLPEEREWLDRLLEAGLVDTFRKFNPDEGAYSWWDYRTKAR--DRNRGWRID 217 (254)
T ss_pred cEEEEeecccCCChhhccChhhcCCCcCcChHHHHHHHHHHHcCCEeeecccCCCCCCCcccCCcCCcc--ccCCceEEE
Confidence 9999999998875410 00 123579999999988888899876422110 113567999
Q ss_pred EEEEecCCCc--cceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEE
Q 012811 396 RFICSLRDFK--IIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTI 451 (456)
Q Consensus 396 ~I~~s~~~~~--~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~ 451 (456)
|||++. .+. +.+..+.. +. ....++|||+||+++|
T Consensus 218 ~i~~s~-~~~~~v~~~~i~~-~~-------------------~~~~~~SDH~Pv~~~~ 254 (254)
T TIGR00195 218 YFLVSE-PLKERCVDCGIDY-DI-------------------RGSEKPSDHCPVVLEF 254 (254)
T ss_pred EEEECH-HHHhhhhEEEEcH-HH-------------------hcCCCCCCcccEEEeC
Confidence 999984 444 55555521 00 1124689999999875
No 9
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.93 E-value=4.7e-25 Score=206.36 Aligned_cols=247 Identities=24% Similarity=0.268 Sum_probs=179.4
Q ss_pred CceEEEEEeccCCC--CCChhhHHHHHHHHHhhCCCcEEEEeccC-HhHHHHHHhCC-CccceEEecCCCCCCCCCeEEE
Q 012811 184 GSLKILSYNVWFRE--DLEMHPRMKTIGDLIQLHSPDIICFQEIT-PNIYDILCKSS-WWKGYRCSVPNEMADSRGYFCM 259 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~--~~~~~~r~~~i~~~I~~~~pDII~LQEv~-~~~~~~L~~~~-~~~~y~~~~~~~~~~~~~~g~a 259 (456)
-+|||+|+|+|+.. +.....|++++.+.+.+...||+.|||++ .+..+.|.+.. ..++|.-.+.. +..|.|++
T Consensus 7 ~~lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FHS---GimGaGL~ 83 (422)
T KOG3873|consen 7 LELRILTLNIWGIPYVSKDRRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFHS---GIMGAGLC 83 (422)
T ss_pred heeeeeEeeccccccccchhHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhhhc---ccccCceE
Confidence 47999999999986 33457889999999999999999999998 44567777643 23445433432 23478899
Q ss_pred EEEeeecceeeEeeCCCCC-----------CCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHH
Q 012811 260 QLSKLQAKSFTCEPFRNSI-----------MGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEA 328 (456)
Q Consensus 260 ilSr~pi~~~~~~~~~~~~-----------~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l 328 (456)
+|||+||.+.-...|+-.+ .|+.+..+.+.++ |+.+.++|+||.+...... +.+-..|..|+-++
T Consensus 84 vfSK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~-g~~v~~yntHLHAeY~rq~---D~YL~HR~~QAwdl 159 (422)
T KOG3873|consen 84 VFSKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVG-GRMVNLYNTHLHAEYDRQN---DEYLCHRVAQAWDL 159 (422)
T ss_pred EeecCchhhhhhhccccCCccceeeeccccccceeEEEEEeeC-CEEeeeeehhccccccccC---chhhhHHHHHHHHH
Confidence 9999999987655544221 2466777788888 6999999999999855332 44677899999999
Q ss_pred HHHhhc----CCCEEEEccCCCCCCCCCCcCC-CCCcccccccccCCC---------------CCccccCCCCcccc---
Q 012811 329 INLLKK----NPNVIFCGDMNWDDKLDGKFPL-PDGWVDAWTELRPGE---------------NGWTYDTKSNKMLS--- 385 (456)
Q Consensus 329 ~~~l~~----~~pvIl~GDFN~~~~~~~~~~l-~~gl~D~~~~~~~~~---------------~~~T~~~~~~~~~~--- 385 (456)
.++|+. ..-||++||||+.|.+.....+ ..||.|+|..+++.. .+.|.+...|.+.+
T Consensus 160 aqfi~~t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~daw~~~h~~q~e~~~~r~s~~~~l~~g~tcd~~~N~y~~aqk 239 (422)
T KOG3873|consen 160 AQFIRATRQNADVVILAGDLNMQPQDLGHKLLLSAGLVDAWTSLHLDQCESDSFRLSEDKELVEGNTCDSPLNCYTSAQK 239 (422)
T ss_pred HHHHHHHhcCCcEEEEecCCCCCccccceeeeeccchhhhHhhhchhhhcCcccccchhhhhhcCCcccCcchhhhHHHh
Confidence 999965 5679999999999998877654 569999999886321 22344444343321
Q ss_pred -CCCccCCCccEEEEecCCCccceEEEeecc-ccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEec
Q 012811 386 -GNRTLQKRLDRFICSLRDFKIIRIDMIGVE-AIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 454 (456)
Q Consensus 386 -~~~~~~~rID~I~~s~~~~~~~~~~~~g~d-~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~~ 454 (456)
.......||||+|+++..+..+..++.-+. .+|. .....|||++++++|.+.
T Consensus 240 ~~ddp~~~RiDYvl~k~~~~~~~~a~~~~t~~rvP~-----------------~d~s~SDH~Al~a~L~I~ 293 (422)
T KOG3873|consen 240 REDDPLGKRIDYVLVKPGDCNAKIAEVEFTEPRVPG-----------------EDCSYSDHEALMATLKIF 293 (422)
T ss_pred CCCCccceeeeEEEEcCcceEEEeeeEEecCCCCCC-----------------CCCCccchhhheeEEEee
Confidence 112347899999999777776665554343 4443 245689999999999875
No 10
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.93 E-value=1.2e-24 Score=204.99 Aligned_cols=219 Identities=21% Similarity=0.251 Sum_probs=137.1
Q ss_pred eEEEEEeccCCCCCChhhHH-HHHHHHHhhCCCcEEEEeccCHhHHHHHHhCCCccceEEecCCCCCCCCCeEEEEEEee
Q 012811 186 LKILSYNVWFREDLEMHPRM-KTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQLSKL 264 (456)
Q Consensus 186 lrV~T~Nv~~~~~~~~~~r~-~~i~~~I~~~~pDII~LQEv~~~~~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ailSr~ 264 (456)
|||+||||++.. .+. ..+.++|.+++||||||||+.-...+.... ..+|+..... ...++..||||++|.
T Consensus 1 mki~swNVNgir-----~~~~~~~~~~l~~~~~DIiclQEtK~~~~~~~~~---~~gY~~~~~~-~~~kgy~GVAi~~k~ 71 (250)
T PRK13911 1 MKLISWNVNGLR-----ACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE---FKGYFDFWNC-AIKKGYSGVVTFTKK 71 (250)
T ss_pred CEEEEEEeCChh-----HhhhhhHHHHHHhcCCCEEEEEeecccccccccc---cCCceEEEEe-cccCccceEEEEEcC
Confidence 799999999985 344 368899999999999999998433222111 2456544321 122344679999997
Q ss_pred ecceee-EeeCCC-CCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhh---cCCCEE
Q 012811 265 QAKSFT-CEPFRN-SIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLK---KNPNVI 339 (456)
Q Consensus 265 pi~~~~-~~~~~~-~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~---~~~pvI 339 (456)
++.... .+.... ...||.+ . .+++ .+.|+|++.+......+++ ..|......+.+++. ...++|
T Consensus 72 ~~~~v~~~~~~~~~d~eGR~I-~--~~~~---~~~l~nvY~Pn~~~~~~r~-----~~K~~~~~~~~~~l~~l~~~~~~I 140 (250)
T PRK13911 72 EPLSVSYGINIEEHDKEGRVI-T--CEFE---SFYLVNVYTPNSQQALSRL-----SYRMSWEVEFKKFLKALELKKPVI 140 (250)
T ss_pred CchheEEcCCCCcccccCCEE-E--EEEC---CEEEEEEEecCCCCCCcch-----HHHHHHHHHHHHHHHhcccCCCEE
Confidence 654432 121111 1235544 3 3444 5999999999886433221 234444444444444 357999
Q ss_pred EEccCCCCCCCCCCc---------------------CCCCCcccccccccCC-CCCccccCCCCccccCCCccCCCccEE
Q 012811 340 FCGDMNWDDKLDGKF---------------------PLPDGWVDAWTELRPG-ENGWTYDTKSNKMLSGNRTLQKRLDRF 397 (456)
Q Consensus 340 l~GDFN~~~~~~~~~---------------------~l~~gl~D~~~~~~~~-~~~~T~~~~~~~~~~~~~~~~~rID~I 397 (456)
+|||||+.+...... .+..||+|+|+.++|. +..|||....... ...+.+.|||||
T Consensus 141 i~GD~Nva~~~~D~~~~~~~~~~~gf~~~er~~f~~~l~~gl~D~~R~~~p~~~~~yTww~~~~~~--~~~n~g~RIDyi 218 (250)
T PRK13911 141 VCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYPNKEKAYTWWSYMQQA--RDKNIGWRIDYF 218 (250)
T ss_pred EEccccCCCChhhccChhhcCCCCCcCHHHHHHHHHHHhcCCeehhhhhCCCCCCCCccCCCcCCc--cccCCcceEEEE
Confidence 999999866432111 0344899999999987 4679987653221 122567999999
Q ss_pred EEecCCCcc--ceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEE
Q 012811 398 ICSLRDFKI--IRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTI 451 (456)
Q Consensus 398 ~~s~~~~~~--~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~ 451 (456)
|+++ .+.. ....+. .....|||+||+++|
T Consensus 219 lvs~-~~~~~~~~~~i~------------------------~~~~~SDH~Pv~~~~ 249 (250)
T PRK13911 219 LCSN-PLKTRLKDALIY------------------------KDILGSDHCPVGLEL 249 (250)
T ss_pred EECh-HHhhhEEEEEEC------------------------CCCCCCCcccEEEEe
Confidence 9994 3432 222221 123579999999987
No 11
>PTZ00297 pantothenate kinase; Provisional
Probab=99.92 E-value=8.3e-24 Score=238.43 Aligned_cols=244 Identities=17% Similarity=0.142 Sum_probs=153.2
Q ss_pred CCceEEEEEeccCCCCCChhhHHHHHHHHHhhC-CCcEEEEeccCHhH----------------HHHHHhCCCccceEEe
Q 012811 183 SGSLKILSYNVWFREDLEMHPRMKTIGDLIQLH-SPDIICFQEITPNI----------------YDILCKSSWWKGYRCS 245 (456)
Q Consensus 183 ~~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~-~pDII~LQEv~~~~----------------~~~L~~~~~~~~y~~~ 245 (456)
..+||||||||+.+...........+..+|+.. +|||||||||.... .+.+.+.+ +.+|.+.
T Consensus 8 ~~~l~VlTyNv~~~~~~~~~~~~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~ 86 (1452)
T PTZ00297 8 CAQARVLSYNFNILPRGCGGFQHERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVDELKARG-FHHYVIS 86 (1452)
T ss_pred CCceEEEEEEccccCCCcccccHHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHHHHHHhcC-CceeEee
Confidence 357999999998664211122357777888884 78999999998531 44445443 2333332
Q ss_pred cCCCCC------CCCCeEEEEEEeeecceeeEeeCCCCC-----CCCceEEEEEEeCC----cceEEEEEeccCCCCCCC
Q 012811 246 VPNEMA------DSRGYFCMQLSKLQAKSFTCEPFRNSI-----MGRELCVAEVEVQG----KKPLVVATSHLESPCPGP 310 (456)
Q Consensus 246 ~~~~~~------~~~~~g~ailSr~pi~~~~~~~~~~~~-----~~R~~~~~~i~~~~----g~~l~v~n~Hl~~~~~~~ 310 (456)
..+... .-..+|++|+|||||.+...+.++... ..|+++.++|+++. +..+.|++|||......
T Consensus 87 ~~~~~~~~~~~~~~~~~G~AILSR~PI~~~~~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~- 165 (1452)
T PTZ00297 87 KQPSYLTMLRYNVCSDNGLIIASRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL- 165 (1452)
T ss_pred cCccccccccCccccCCEEEEEECCChhhceeeecCcccccccccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc-
Confidence 222111 114578999999999999988887532 36899999999862 25899999999986331
Q ss_pred CccccccHHHHHHHHHHHHHHhh-------------cCCCEEEEccCCCC----C----CCCCC-------cCCCCCccc
Q 012811 311 PTWDQMFSKERVEQAKEAINLLK-------------KNPNVIFCGDMNWD----D----KLDGK-------FPLPDGWVD 362 (456)
Q Consensus 311 ~~~~~~~~~~R~~Q~~~l~~~l~-------------~~~pvIl~GDFN~~----~----~~~~~-------~~l~~gl~D 362 (456)
..|..|++++.+++. ...|+||+||||+. + .+..+ ..+..++.|
T Consensus 166 --------~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~~~~~~~~~~s~e~~~ml~~l~~~~~~l~d 237 (1452)
T PTZ00297 166 --------PSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNINGIDPHNGGHPTKRFQELLNELQDLGSGVRE 237 (1452)
T ss_pred --------chHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCccccccccCCccHHHHHHHHHhhhccccHhH
Confidence 236667776666654 24589999999966 1 11111 112335667
Q ss_pred ccccccCCCCCcccc-----CCCCccccCCCccCCCccEEEEecCCCccceEEEeeccccCCchhhhhhhhhhhhhccCC
Q 012811 363 AWTELRPGENGWTYD-----TKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLEL 437 (456)
Q Consensus 363 ~~~~~~~~~~~~T~~-----~~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~ 437 (456)
++.... +....||+ ...++... ......||||||+++ .+.+....++...... -..
T Consensus 238 v~~~~~-~~~~~T~p~~~~fP~~~p~~~-~~~~~~riD~Ifv~~-~v~v~~~~v~~~~~~~----------------~~~ 298 (1452)
T PTZ00297 238 VIYDET-GQHPPTRPPILFFPEQSKLER-YSSTPQRQDYFFVTP-CVQVEKPRIEKFVVSS----------------RRP 298 (1452)
T ss_pred HhHhhc-CCCCCCCCccccccccCcccc-ccCCCcceeEEEEeC-CceEEEEEEecccccC----------------CCC
Confidence 666553 22444543 22222111 112346999999984 6777777764211100 012
Q ss_pred CCCccCCcceeEEEEecc
Q 012811 438 PVLPSDHYGLLLTISNNI 455 (456)
Q Consensus 438 ~~~~SDH~pV~~~~~~~~ 455 (456)
+.++|||+||+++|++..
T Consensus 299 ~~~~SDH~Pv~a~l~l~~ 316 (1452)
T PTZ00297 299 YTYLSDHFGVSARLTLPL 316 (1452)
T ss_pred CCCcCcCccEEEEEEeCC
Confidence 467999999999999743
No 12
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=5e-24 Score=203.05 Aligned_cols=221 Identities=20% Similarity=0.237 Sum_probs=136.8
Q ss_pred eEEEEEeccCCCCCChhhHHHHH-HHHHhhCCCcEEEEeccCHhHHH---HHHhCCCccceEEecCCCCCCCCCeEEEEE
Q 012811 186 LKILSYNVWFREDLEMHPRMKTI-GDLIQLHSPDIICFQEITPNIYD---ILCKSSWWKGYRCSVPNEMADSRGYFCMQL 261 (456)
Q Consensus 186 lrV~T~Nv~~~~~~~~~~r~~~i-~~~I~~~~pDII~LQEv~~~~~~---~L~~~~~~~~y~~~~~~~~~~~~~~g~ail 261 (456)
|||+||||++.. .+..++ +++|.+++||||||||+...... .+.. ..+|...+.... ..+.+|++||
T Consensus 1 lri~t~Nv~g~~-----~~~~~~~~~~l~~~~~DIv~LQE~~~~~~~~~~~~~~---~~g~~~~~~~~~-~~~~~G~ail 71 (255)
T TIGR00633 1 MKIISWNVNGLR-----ARLHKLFLDWLKEEQPDVLCLQETKVADEQFPAELFE---ELGYHVFFHGAK-SKGYSGVAIL 71 (255)
T ss_pred CEEEEEecccHH-----HHhhccHHHHHHhcCCCEEEEEeccCchhhCCHhHhc---cCCceEEEeecc-cCCcceEEEE
Confidence 799999999874 345566 99999999999999999854311 2222 234443332221 1245789999
Q ss_pred EeeecceeeE-eeCCCC-CCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhh----cC
Q 012811 262 SKLQAKSFTC-EPFRNS-IMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLK----KN 335 (456)
Q Consensus 262 Sr~pi~~~~~-~~~~~~-~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~----~~ 335 (456)
+|+|+..... +..... ..+| .+ .+.. ..+.|+++|++....... .....|..+++.+.+.+. ..
T Consensus 72 sr~~~~~~~~~~~~~~~~~~~r-~l--~~~~---~~~~i~~vy~p~~~~~~~----~~~~~r~~~~~~l~~~~~~~~~~~ 141 (255)
T TIGR00633 72 SKVEPLDVRYGFGGEEHDEEGR-VI--TAEF---DGFTVVNVYVPNGGSRGL----ERLEYKLQFWDALFQYYEKELDAG 141 (255)
T ss_pred EcCCcceEEECCCCCcccCCCc-EE--EEEE---CCEEEEEEEccCCCCCCc----hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999875543 222111 1234 22 2333 369999999988753211 112456667776665543 36
Q ss_pred CCEEEEccCCCCCCCCC------------C-------c--CCCCCcccccccccCCC-CCccccCCCCccccCCCccCCC
Q 012811 336 PNVIFCGDMNWDDKLDG------------K-------F--PLPDGWVDAWTELRPGE-NGWTYDTKSNKMLSGNRTLQKR 393 (456)
Q Consensus 336 ~pvIl~GDFN~~~~~~~------------~-------~--~l~~gl~D~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~~r 393 (456)
.|+|++||||+.+.... . + .+..||.|+|+..++.. ..|||+....... ......|
T Consensus 142 ~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~T~~~~~~~~~--~~~~~~r 219 (255)
T TIGR00633 142 KPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEEREWFDELLEAGLVDTFRHFNPDTEGAYTWWDYRSGAR--DRNRGWR 219 (255)
T ss_pred CcEEEEeecccCCChHHccChhhcCCCCCcCHHHHHHHHHHHHcCCEecchhhCCCCCCcCcCcCCccCcc--ccCCceE
Confidence 79999999998764310 0 0 12358999999887765 4899876532110 1134579
Q ss_pred ccEEEEecCCCc--cceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEE
Q 012811 394 LDRFICSLRDFK--IIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTIS 452 (456)
Q Consensus 394 ID~I~~s~~~~~--~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~ 452 (456)
|||||++. .+. +.+..+. . ....|||+||+++|.
T Consensus 220 ID~i~~s~-~~~~~~~~~~i~-~-----------------------~~~~SDH~pv~~~~~ 255 (255)
T TIGR00633 220 IDYFLVSE-PLAERVVDSYID-S-----------------------EIRGSDHCPIVLELD 255 (255)
T ss_pred EEEEEECH-HHHhhhcEeEEC-C-----------------------CCCCCCcccEEEEEC
Confidence 99999984 332 3444441 0 113599999999873
No 13
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.81 E-value=7.8e-19 Score=163.41 Aligned_cols=188 Identities=12% Similarity=0.052 Sum_probs=119.9
Q ss_pred CCCceEEEEEeccCCCCCChhhHHH-HHHHHHhhC-CCcEEEEeccCHh--H----HHHHHh---------CCCc-----
Q 012811 182 VSGSLKILSYNVWFREDLEMHPRMK-TIGDLIQLH-SPDIICFQEITPN--I----YDILCK---------SSWW----- 239 (456)
Q Consensus 182 ~~~~lrV~T~Nv~~~~~~~~~~r~~-~i~~~I~~~-~pDII~LQEv~~~--~----~~~L~~---------~~~~----- 239 (456)
....++|+|||+++.... ...+.+ .+.++|... ++|||+|||+... . ...... ..|.
T Consensus 21 ~~~~~~~~twn~qg~s~~-~~~kw~~~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~~v~ey~w~l~~~s 99 (271)
T PRK15251 21 NLEDYKVATWNLQGSSAS-TESKWNVNVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGIPIDEYTWNLGTRS 99 (271)
T ss_pred ccccceEEEeecCCCCCC-ChhhhhhhHHHHhcCCCCCCEEEEEecCCCccccccccccccccccccCcccEEEEccCcc
Confidence 346799999999998532 223334 577888775 6999999999732 1 001111 0010
Q ss_pred -cceEEecCCCCC-CCCCeEEEEEEeeecceeeEeeCCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCcccccc
Q 012811 240 -KGYRCSVPNEMA-DSRGYFCMQLSKLQAKSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMF 317 (456)
Q Consensus 240 -~~y~~~~~~~~~-~~~~~g~ailSr~pi~~~~~~~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~ 317 (456)
.++.+.+..... ..+.+|+||+||+|+.+...++.+ ....|.++.+++ + + +.++++|+.+...
T Consensus 100 rpgm~YiY~~aiD~~ggr~glAIlSr~~a~~~~~l~~p-~~~~Rpilgi~i--~-~--~~ffstH~~a~~~--------- 164 (271)
T PRK15251 100 RPNQVYIYYSRVDVGANRVNLAIVSRRRADEVIVLRPP-TVASRPIIGIRI--G-N--DVFFSIHALANGG--------- 164 (271)
T ss_pred CCCceEEEEecccCCCCceeEEEEecccccceEEecCC-CCcccceEEEEe--c-C--eEEEEeeecCCCC---------
Confidence 111112222222 235689999999999888777766 344688887765 3 3 7999999999843
Q ss_pred HHHHHHHHHHHHHHhh-c--CCCEEEEccCCCCCCCCCCcCCCCCcccccccccCCCCCccccCCCCccccCCCccCCCc
Q 012811 318 SKERVEQAKEAINLLK-K--NPNVIFCGDMNWDDKLDGKFPLPDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRL 394 (456)
Q Consensus 318 ~~~R~~Q~~~l~~~l~-~--~~pvIl~GDFN~~~~~~~~~~l~~gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~rI 394 (456)
..+.++++.+.+++. . ..|+||+||||..|.+.........|......+.|. ..|+. +..+|
T Consensus 165 -~da~aiV~~I~~~f~~~~~~~pw~I~GDFNr~P~sl~~~l~~~~~~~~~~iv~p~--~pT~~------------s~~~I 229 (271)
T PRK15251 165 -TDAGAIVRAVHNFFRPNMRHINWMIAGDFNRSPDRLESTLDTEHLRNRVNIVAPT--EPTQR------------SGGTL 229 (271)
T ss_pred -ccHHHHHHHHHHHHhhccCCCCEEEeccCCCCCcchhhhhcchhcccccEEeCCC--CCCCC------------CCCee
Confidence 348889999998887 4 358999999999988775443322233222222222 23332 34789
Q ss_pred cEEEEe
Q 012811 395 DRFICS 400 (456)
Q Consensus 395 D~I~~s 400 (456)
|||+..
T Consensus 230 DYiv~~ 235 (271)
T PRK15251 230 DYAVTG 235 (271)
T ss_pred EEEEec
Confidence 999996
No 14
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.81 E-value=2.8e-18 Score=162.60 Aligned_cols=196 Identities=19% Similarity=0.204 Sum_probs=115.3
Q ss_pred CceEEEEEeccCCCC--CChhhHHHHHHHHHhhCCCcEEEEeccCHhH-------HHHHHhCCCccceEEecCCCCC-CC
Q 012811 184 GSLKILSYNVWFRED--LEMHPRMKTIGDLIQLHSPDIICFQEITPNI-------YDILCKSSWWKGYRCSVPNEMA-DS 253 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~--~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~-------~~~L~~~~~~~~y~~~~~~~~~-~~ 253 (456)
..|||+||||+.+.+ ..|..|+..|+++|. ++|||++|||.... ++.|.+.. ...|.+..++..+ ..
T Consensus 16 ~~l~I~SfNIr~fgd~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~-~~~Y~~v~s~r~gr~~ 92 (276)
T smart00476 16 ASLRICAFNIQSFGDSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDS-PNTYSYVSSEPLGRNS 92 (276)
T ss_pred CcEEEEEEECcccCCccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcC-CCCceEEecCCCCCCC
Confidence 469999999996553 357788999999998 78999999997442 23344322 2356655443322 22
Q ss_pred CCeEEEEEE---eeecceeeEeeC----CCCCCCCceEEEEEEeCC--cceEEEEEeccCCCCCCCCccccccHHHHHHH
Q 012811 254 RGYFCMQLS---KLQAKSFTCEPF----RNSIMGRELCVAEVEVQG--KKPLVVATSHLESPCPGPPTWDQMFSKERVEQ 324 (456)
Q Consensus 254 ~~~g~ailS---r~pi~~~~~~~~----~~~~~~R~~~~~~i~~~~--g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q 324 (456)
.+...+++. |+.+.+...+.- ....+.|...++.++.+. ++.|.++++|+.+. .+.++
T Consensus 93 ~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~~~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~-------------~~~~e 159 (276)
T smart00476 93 YKEQYLFLYRSDLVSVLDSYLYDDGCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTTPE-------------AAVAE 159 (276)
T ss_pred CCEEEEEEEecceEEEcccceecCCCCCccccccccceEEEEEeCCCCCccEEEEEecCChH-------------HHHHH
Confidence 234455553 355544433321 123467999999998764 35899999999875 13334
Q ss_pred HHHHH----HHhhc--CCCEEEEccCCCCCCCCCCcCCCCCccccccccc-CCCCCccccCCCCccccCCCccCCCccEE
Q 012811 325 AKEAI----NLLKK--NPNVIFCGDMNWDDKLDGKFPLPDGWVDAWTELR-PGENGWTYDTKSNKMLSGNRTLQKRLDRF 397 (456)
Q Consensus 325 ~~~l~----~~l~~--~~pvIl~GDFN~~~~~~~~~~l~~gl~D~~~~~~-~~~~~~T~~~~~~~~~~~~~~~~~rID~I 397 (456)
++.|. +..++ ..++||+||||+........ . |..+. -...+++|.-..... .........+|+|
T Consensus 160 ~~aL~~v~~~~~~~~~~~~villGDFNa~~~y~~~~----~----~~~i~l~~~~~f~wli~d~~d-tT~~~~~~~YDri 230 (276)
T smart00476 160 IDALYDVYLDVRQKWGTEDVIFMGDFNAGCSYVTKK----Q----WSSIRLRTSPTFHWLIPDSAD-TTVTSTHCAYDRI 230 (276)
T ss_pred HHHHHHHHHHHHHhhccCCEEEEccCCCCCCccChh----h----hhhhcccccCCeeEeecCCcc-ccccCCCCCcccE
Confidence 44433 33332 67999999999865422211 1 22221 122334554321110 1111345789999
Q ss_pred EEecCCC
Q 012811 398 ICSLRDF 404 (456)
Q Consensus 398 ~~s~~~~ 404 (456)
++.+...
T Consensus 231 v~~~~~~ 237 (276)
T smart00476 231 VVAGERL 237 (276)
T ss_pred EEechhh
Confidence 9986433
No 15
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.79 E-value=5.6e-18 Score=166.42 Aligned_cols=162 Identities=19% Similarity=0.231 Sum_probs=110.4
Q ss_pred CceEEEEEeccCCC---------------CCChhhHHHHHHHHHhhCCCcEEEEeccCHhHH-HHHHhCCCccceEEecC
Q 012811 184 GSLKILSYNVWFRE---------------DLEMHPRMKTIGDLIQLHSPDIICFQEITPNIY-DILCKSSWWKGYRCSVP 247 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~---------------~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~-~~L~~~~~~~~y~~~~~ 247 (456)
-.|+||||||.... -..|..|...|+..+..++|||+|||||+.... ...+......+|...+.
T Consensus 115 f~ftvmSYNILAQ~l~~~~~r~~~~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~~ 194 (495)
T KOG2338|consen 115 FDFTVMSYNILAQDLLRDIRRLYFPESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFK 194 (495)
T ss_pred cceEEEEehHhHHHHHHHhHHhhccCChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEEE
Confidence 48999999997532 246899999999999999999999999995532 22222222345554332
Q ss_pred CCCCCCCCeEEEEEE---eeecceeeEeeCCCCCCC-----CceEEEEEEe--C-C-cceEEEEEeccCCCCCCCCcccc
Q 012811 248 NEMADSRGYFCMQLS---KLQAKSFTCEPFRNSIMG-----RELCVAEVEV--Q-G-KKPLVVATSHLESPCPGPPTWDQ 315 (456)
Q Consensus 248 ~~~~~~~~~g~ailS---r~pi~~~~~~~~~~~~~~-----R~~~~~~i~~--~-~-g~~l~v~n~Hl~~~~~~~~~~~~ 315 (456)
.. ...+..|++|+. +|.+.....+.|.+...+ ...+++.++. . . ++.+.|+||||-....
T Consensus 195 r~-t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~------- 266 (495)
T KOG2338|consen 195 RR-TGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPS------- 266 (495)
T ss_pred ec-cCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCc-------
Confidence 11 235678999984 466666555544332211 2334444443 1 1 4689999999988843
Q ss_pred ccHHHHHHHHHHHHHHhhc-------CCCEEEEccCCCCCCCCCCc
Q 012811 316 MFSKERVEQAKEAINLLKK-------NPNVIFCGDMNWDDKLDGKF 354 (456)
Q Consensus 316 ~~~~~R~~Q~~~l~~~l~~-------~~pvIl~GDFN~~~~~~~~~ 354 (456)
....|..|...|++.+.+ +.|+|+|||||..+.+..+.
T Consensus 267 -~~~vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~~~y~ 311 (495)
T KOG2338|consen 267 -RSDVRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDSPPYL 311 (495)
T ss_pred -ccchhhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCCCcch
Confidence 357899999999988865 34999999999988766543
No 16
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.73 E-value=1.9e-17 Score=155.18 Aligned_cols=147 Identities=28% Similarity=0.338 Sum_probs=82.6
Q ss_pred EEEeccCCCCCC-hhhHHHHHHHHHhhCCCcEEEEeccCHh-H----HHHHHhCCCccc-eEEecCCCCC--CCCCeEEE
Q 012811 189 LSYNVWFREDLE-MHPRMKTIGDLIQLHSPDIICFQEITPN-I----YDILCKSSWWKG-YRCSVPNEMA--DSRGYFCM 259 (456)
Q Consensus 189 ~T~Nv~~~~~~~-~~~r~~~i~~~I~~~~pDII~LQEv~~~-~----~~~L~~~~~~~~-y~~~~~~~~~--~~~~~g~a 259 (456)
|||||++..... ...+...|+++|..++||||||||+... . ...+... .+ +......... ...++|++
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~ 77 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGY---LGYYGSFWPGNSPPSDAGGYGVA 77 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTC---TTHEEEEEETSSSTTCSSSEEEE
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhcccc---cccccceeccccccccccCceEE
Confidence 799999821000 0244556999999999999999999843 2 2233332 22 2222211110 01468999
Q ss_pred EEEeeecceeeEeeCCCC-CCCCceE--------EEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHH
Q 012811 260 QLSKLQAKSFTCEPFRNS-IMGRELC--------VAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAIN 330 (456)
Q Consensus 260 ilSr~pi~~~~~~~~~~~-~~~R~~~--------~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~ 330 (456)
|++|.|+.......+... ....... .+.+.+. +++|.|+++|+++. ...|..|...+.+
T Consensus 78 i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~~~H~~~~-----------~~~~~~~~~~~~~ 145 (249)
T PF03372_consen 78 ILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN-GKPITVVNVHLPSS-----------NDERQEQWRELLA 145 (249)
T ss_dssp EEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE-TEEEEEEEEETTSH-----------HHHHHHHHHHHHH
T ss_pred EEEcccccccccccccccccccccccccccccccccccccc-ceEEEeeecccccc-----------chhhhhhhhhhhh
Confidence 999999876554433111 1111111 1112222 67999999999885 2344444445555
Q ss_pred Hhhc----C--CCEEEEccCCCCCCC
Q 012811 331 LLKK----N--PNVIFCGDMNWDDKL 350 (456)
Q Consensus 331 ~l~~----~--~pvIl~GDFN~~~~~ 350 (456)
.+.. . .++|||||||..+.+
T Consensus 146 ~~~~~~~~~~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 146 RIQKIYADNPNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp HHHHHHHTSSCCEEEEEEE-SS-BSS
T ss_pred hhhhcccccccceEEEEeecccCCcc
Confidence 5533 2 259999999987754
No 17
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.72 E-value=2.1e-17 Score=155.13 Aligned_cols=216 Identities=18% Similarity=0.097 Sum_probs=136.1
Q ss_pred CCCceEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhHHH---HHHhCCCccceEEecCCCCCCCCCeEE
Q 012811 182 VSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYD---ILCKSSWWKGYRCSVPNEMADSRGYFC 258 (456)
Q Consensus 182 ~~~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~---~L~~~~~~~~y~~~~~~~~~~~~~~g~ 258 (456)
....++++++|+++.+. -..++...|...++|+|.+||+...+.. .+.. .+.|....... ...+++
T Consensus 85 ~~~~~~~l~~N~r~~n~-----~~~k~Lsl~~~~~~D~v~~~E~~~~~~~~~~~l~~---~yP~~~~~~~~---~~~~~~ 153 (309)
T COG3021 85 DQRLLWNLQKNVRFDNA-----SVAKLLSLIQQLDADAVTTPEGVQLWTAKVGALAA---QYPAFILCQHP---TGVFTL 153 (309)
T ss_pred cchhhhhhhhhccccCc-----CHHHHHHHHhhhCcchhhhHHHHHHhHhHHHHHHH---hCCceeecCCC---CCeeee
Confidence 34679999999888753 2345667777778999999999866533 3343 34444333221 255778
Q ss_pred EEEEeee-cceeeEeeCCCCCCCCceEEEEEEeCCcceEEEEEeccCC-CCCCCCccccccHHHHHHHHHHHHHHhhc-C
Q 012811 259 MQLSKLQ-AKSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLES-PCPGPPTWDQMFSKERVEQAKEAINLLKK-N 335 (456)
Q Consensus 259 ailSr~p-i~~~~~~~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~-~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~-~ 335 (456)
+++||.+ +...+.... ....+..+.......+|+.+.|++.|... +.+. ...| .|+.++.+.+.. .
T Consensus 154 a~~sr~~~~~~~~~e~~--~~~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~--------~~~~-~ql~~l~~~i~~~~ 222 (309)
T COG3021 154 AILSRRPCCPLTEAEPW--LRLPKSALATAYPLPDGTELTVVALHAVNFPVGT--------DPQR-AQLLELGDQIAGHS 222 (309)
T ss_pred eeccccccccccccCcc--ccCCccceeEEEEcCCCCEEEEEeeccccccCCc--------cHHH-HHHHHHHHHHHcCC
Confidence 8999865 322211111 11123444555555668999999999984 3221 1334 888888888877 6
Q ss_pred CCEEEEccCCCCCCCCCCcCCC-CCcccccccccCCCCCccccCCCCccccCCCccCCCccEEEEecCCCccceEEEeec
Q 012811 336 PNVIFCGDMNWDDKLDGKFPLP-DGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGV 414 (456)
Q Consensus 336 ~pvIl~GDFN~~~~~~~~~~l~-~gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~~g~ 414 (456)
.|+|++||||+.|.+.....+. -+-.+++...+ .....|++.... +..+.+|||||+++ +.+...+..
T Consensus 223 gpvIlaGDfNa~pWS~~~~R~~~l~~~~~~~~aG-~~~~~~~p~~~~------r~~g~PIDhvf~rg--l~~~ka~rl-- 291 (309)
T COG3021 223 GPVILAGDFNAPPWSRTAKRMAALGGLRAAPRAG-LWEVRFTPDERR------RAFGLPIDHVFYRG--LTVMKARRL-- 291 (309)
T ss_pred CCeEEeecCCCcchhHHHHHHHHhcccccchhcc-CCccccCHHHHh------hccCCCcceeeecC--cchhhhhhc--
Confidence 8999999999988877533221 12244455554 233334443311 13568899999995 555544442
Q ss_pred cccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEe
Q 012811 415 EAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISN 453 (456)
Q Consensus 415 d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~ 453 (456)
....|||+||+++|+.
T Consensus 292 -----------------------~~~gSDH~PLLveF~~ 307 (309)
T COG3021 292 -----------------------PDRGSDHRPLLVEFSY 307 (309)
T ss_pred -----------------------cccCCCCCceEEEEEe
Confidence 1258999999999986
No 18
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.62 E-value=4.5e-15 Score=140.34 Aligned_cols=165 Identities=18% Similarity=0.141 Sum_probs=98.6
Q ss_pred ceEEEEEeccCCC------------CCChhhHHHHHHHHHhhCCCcEEEEeccCHhHHH-HHHhCCCccceEEecCCCCC
Q 012811 185 SLKILSYNVWFRE------------DLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYD-ILCKSSWWKGYRCSVPNEMA 251 (456)
Q Consensus 185 ~lrV~T~Nv~~~~------------~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~-~L~~~~~~~~y~~~~~~~~~ 251 (456)
.++|||||+.... ...|..|.+.|.+.|..++|||+|||||+....+ +..+..+..+|...+.+..+
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~~ 109 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKER 109 (378)
T ss_pred eeEEEehhhhhhhhccccccCCchhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEecCCC
Confidence 7999999997532 2468899999999999999999999999955433 44444434556544333221
Q ss_pred -------CC--CCeEEEEEEeeecceee--E---------eeCCCC-C--------------CCCc---eEEEEEEeCCc
Q 012811 252 -------DS--RGYFCMQLSKLQAKSFT--C---------EPFRNS-I--------------MGRE---LCVAEVEVQGK 293 (456)
Q Consensus 252 -------~~--~~~g~ailSr~pi~~~~--~---------~~~~~~-~--------------~~R~---~~~~~i~~~~g 293 (456)
.+ .-.|++|+-|+-+.... . .++... . .... ++......+.|
T Consensus 110 k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~~l~n~e~g 189 (378)
T COG5239 110 KVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFVGLFNKEPG 189 (378)
T ss_pred cccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhcchhheeeeeccCCCC
Confidence 11 34688887665111111 0 011000 0 0112 23335556678
Q ss_pred ceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhh----c-C--------------CCEEEEccCCCCCCCCCCc
Q 012811 294 KPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLK----K-N--------------PNVIFCGDMNWDDKLDGKF 354 (456)
Q Consensus 294 ~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~----~-~--------------~pvIl~GDFN~~~~~~~~~ 354 (456)
.++.+++||+++..- +....+-|...+.++++ + . ..+.++||||....+..+.
T Consensus 190 d~~~va~Th~~w~~~--------~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~vy~ 261 (378)
T COG5239 190 DTPYVANTHLPWDPK--------YRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLVYK 261 (378)
T ss_pred CceeEEeccccccCC--------CCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccceecceehh
Confidence 999999999998732 12333334333333332 1 1 1679999999887776665
Q ss_pred CCC
Q 012811 355 PLP 357 (456)
Q Consensus 355 ~l~ 357 (456)
.+.
T Consensus 262 ~l~ 264 (378)
T COG5239 262 FLV 264 (378)
T ss_pred hhh
Confidence 443
No 19
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=99.57 E-value=4.7e-14 Score=144.58 Aligned_cols=272 Identities=19% Similarity=0.170 Sum_probs=165.7
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCC---------------------CChhhHHHHHHHHHhhCCCcEEEEeccCHh---
Q 012811 173 SADNSESGAVSGSLKILSYNVWFRED---------------------LEMHPRMKTIGDLIQLHSPDIICFQEITPN--- 228 (456)
Q Consensus 173 ~~~~~~~~~~~~~lrV~T~Nv~~~~~---------------------~~~~~r~~~i~~~I~~~~pDII~LQEv~~~--- 228 (456)
+++........+.|||.+|||+.+.. .+......++...|..+++|||.|-|+...
T Consensus 451 ~pr~at~~~v~G~LkiasfNVlNyf~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~ 530 (798)
T COG2374 451 NPRPATPPDVGGSLKIASFNVLNYFNKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNGYG 530 (798)
T ss_pred CCccCCccccCceeeeeeeehhhhhccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeeccCCC
Confidence 34444445556899999999986531 123455677889999999999999999743
Q ss_pred ---------HHHHHHhCCCcc-ceEEecCCCCC--CCCCeEEEEEEee---ecceeeEee----CCC-----CCCCCceE
Q 012811 229 ---------IYDILCKSSWWK-GYRCSVPNEMA--DSRGYFCMQLSKL---QAKSFTCEP----FRN-----SIMGRELC 284 (456)
Q Consensus 229 ---------~~~~L~~~~~~~-~y~~~~~~~~~--~~~~~g~ailSr~---pi~~~~~~~----~~~-----~~~~R~~~ 284 (456)
.+..|.+..+.. .|.+....... ......++++.|- .+.....+. +.. ..-.|..+
T Consensus 531 ~~s~~ai~~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~~~~~n~R~~l 610 (798)
T COG2374 531 TDSGDAIAQLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGEIDDNNARPPL 610 (798)
T ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccceEEecccccccccccccccccccccccCcch
Confidence 134455544444 57665443221 1122345555431 111111110 100 00125555
Q ss_pred EEEEE-eCCcceEEEEEeccCCCCCCCCccc------cccHHHHHHHHHHHHHHhhc------CCCEEEEccCCCCCCCC
Q 012811 285 VAEVE-VQGKKPLVVATSHLESPCPGPPTWD------QMFSKERVEQAKEAINLLKK------NPNVIFCGDMNWDDKLD 351 (456)
Q Consensus 285 ~~~i~-~~~g~~l~v~n~Hl~~~~~~~~~~~------~~~~~~R~~Q~~~l~~~l~~------~~pvIl~GDFN~~~~~~ 351 (456)
..+++ +.++.+|+++..||++.+...+.|. ......|.+|+..|..+++. ..+++|+||||+...++
T Consensus 611 aqtF~~~~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~ed 690 (798)
T COG2374 611 AQTFQDLSGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTGKADADIVILGDFNDYAFED 690 (798)
T ss_pred hhhhhhccCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCcccccCCCEEEEeccchhhhcc
Confidence 44443 3346679999999999987655331 22367899999999999984 56999999999998888
Q ss_pred CCcCCCC-CcccccccccCCCCCccccCCCCccccCCCccCCCccEEEEecCCC----ccceEEEeeccccCCchhhhhh
Q 012811 352 GKFPLPD-GWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDF----KIIRIDMIGVEAIPGLLYVKEK 426 (456)
Q Consensus 352 ~~~~l~~-gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~~----~~~~~~~~g~d~~p~~~~~~~~ 426 (456)
....+.. |+...-..+++.+.+|+|-.. +....|||+|.+...- .....++-+.++.+ +.|.-+.
T Consensus 691 pI~~l~~aGy~~l~~~~~~~~~~YSY~f~---------G~~gtLDhaLas~sl~~~v~~a~ewHINAdE~~~-ldYn~~F 760 (798)
T COG2374 691 PIQALEGAGYMNLAARFHDAGDRYSYVFN---------GQSGTLDHALASASLAAQVSGATEWHINADEPDA-LDYNLEF 760 (798)
T ss_pred HHHHHhhcCchhhhhhccCCCCceEEEEC---------CccchHhhhhhhhhhhhhccCceeeeecccccch-hhhhhhh
Confidence 8776655 766655555556778888766 3447899999983211 12234444445543 2333332
Q ss_pred h-hhhhhhccCCCCCccCCcceeEEEEec
Q 012811 427 K-VRKEMQKLELPVLPSDHYGLLLTISNN 454 (456)
Q Consensus 427 ~-~~~~~~~~~~~~~~SDH~pV~~~~~~~ 454 (456)
+ -.....+-..+.++|||-||++.|.+.
T Consensus 761 k~q~~~~~~~~~~fR~SDHDPvvvglnL~ 789 (798)
T COG2374 761 KGQNVSLYKTTNPFRASDHDPVVVGLNLL 789 (798)
T ss_pred ccccccccccCCccccCCCCCeEEEEEec
Confidence 2 011111112467899999999999874
No 20
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=99.50 E-value=6e-14 Score=137.65 Aligned_cols=248 Identities=18% Similarity=0.197 Sum_probs=135.0
Q ss_pred ceEEEEEeccCCC-------------CCChhhHHHHHHHHHhhCCCcEEEEeccCHhHHHHHHhCCCccceEEecCCCC-
Q 012811 185 SLKILSYNVWFRE-------------DLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEM- 250 (456)
Q Consensus 185 ~lrV~T~Nv~~~~-------------~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~~L~~~~~~~~y~~~~~~~~- 250 (456)
.++|+|||+.... ...|..|...+.+.|...+||||||||| ..+.+.+...+...+|...+.+..
T Consensus 19 ~~~v~s~n~l~~~~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icLqev-~~~~~~~~p~l~~~gY~g~~~~k~~ 97 (361)
T KOG0620|consen 19 TFTVLSYNILSQLYATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCLQEV-DRYHDFFSPELEASGYSGIFIEKTR 97 (361)
T ss_pred eEEeechhhhhhhhcccCCCcccchhhccHHHHHHHHHHHHhCCCcceeecchh-hHHHHHccchhhhcCCcceeecccc
Confidence 8999999997653 2357899999999999999999999999 555555554444446665444321
Q ss_pred ----CCCCCeEEEEE---EeeecceeeEeeCCC-------------------CCCCCceEEEEEEeCCcceEE----EEE
Q 012811 251 ----ADSRGYFCMQL---SKLQAKSFTCEPFRN-------------------SIMGRELCVAEVEVQGKKPLV----VAT 300 (456)
Q Consensus 251 ----~~~~~~g~ail---Sr~pi~~~~~~~~~~-------------------~~~~R~~~~~~i~~~~g~~l~----v~n 300 (456)
......|++|+ +++.+.....+.+.. +..++.+ ..++-..|..+. ++|
T Consensus 98 ~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~~~~~~~~~~~~d~~~~~l--~~L~~~~~~~~~~~~~~~n 175 (361)
T KOG0620|consen 98 MGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPPNIAQLNRLTTLDNSGNKL--VSLKAELGNMVSLPHLLLN 175 (361)
T ss_pred cchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcchhHHHHHhhhccccccchh--hhhhhhcCCceeecccccc
Confidence 12345789987 345554322222110 0011211 111111122333 367
Q ss_pred eccCCCCCCCCccccccHHHHHHHHHHHHHHhh----------------c---CCCEEEEccCCCCCCCCCCcCCCCC--
Q 012811 301 SHLESPCPGPPTWDQMFSKERVEQAKEAINLLK----------------K---NPNVIFCGDMNWDDKLDGKFPLPDG-- 359 (456)
Q Consensus 301 ~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~----------------~---~~pvIl~GDFN~~~~~~~~~~l~~g-- 359 (456)
+|+..... +...+.-|+..+...+. . .-|+++|||||..+.+..+..+..+
T Consensus 176 ~h~~~~~~--------~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~gdfNs~p~~~v~~~~~~~~~ 247 (361)
T KOG0620|consen 176 THILWDLP--------YEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRIASFPLLLCGDFNSTPLSPVYALLASGIL 247 (361)
T ss_pred ceeccCCC--------ccchHHHHHHHHhhcccccchhhhhhhccccccccccccceeeeccccCCCCccceeecccCCC
Confidence 77766533 33456666665555421 1 3599999999999887665543221
Q ss_pred ---cccccccccCCCC------------------CccccCCCCccccCCCccCCCccEEEEecCCCccceEEEeeccccC
Q 012811 360 ---WVDAWTELRPGEN------------------GWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIP 418 (456)
Q Consensus 360 ---l~D~~~~~~~~~~------------------~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~~g~d~~p 418 (456)
..| |........ .+-|............++...|||||+++..+.+...--. .+.
T Consensus 248 ~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ftn~t~~F~g~~DYIfys~~~~~~~~~L~~-~~e-- 323 (361)
T KOG0620|consen 248 SPEDAD-NKDLPLMSALGSKVNKSYEEMSHDQRRKLEYTTGEPRFTNYTPGFKGTLDYIFYSKAALIVESALEL-LDE-- 323 (361)
T ss_pred Ccchhh-HhhccccccccccccccccccchhhhcccccccCccccccccCCccceeeEEEEccccccccccccC-CCh--
Confidence 111 111110000 0111111000011123566789999999755544322111 110
Q ss_pred CchhhhhhhhhhhhhccCCCCCccCCcceeEEEEec
Q 012811 419 GLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 454 (456)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~~ 454 (456)
.........++.+.+||||+|++++|++.
T Consensus 324 -------~~~~~~~~~lPs~~~pSDHi~L~~ef~~~ 352 (361)
T KOG0620|consen 324 -------DELVIKVTGLPSPHHPSDHIPLLAEFEIA 352 (361)
T ss_pred -------hhhhcccccCCCCCCCCccchhhcccccc
Confidence 00111234457789999999999999864
No 21
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=99.36 E-value=5.4e-11 Score=115.99 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=91.6
Q ss_pred ceEEEEEeccCCCCCChhhHHHHHHHHHhh-------CCCcE--EEEeccCH---------------hHHHHHHhCCC-c
Q 012811 185 SLKILSYNVWFREDLEMHPRMKTIGDLIQL-------HSPDI--ICFQEITP---------------NIYDILCKSSW-W 239 (456)
Q Consensus 185 ~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~-------~~pDI--I~LQEv~~---------------~~~~~L~~~~~-~ 239 (456)
.+-|.||||.+... ... ..+.++|.. ..||| |+|||+.. .+.+.+...+. .
T Consensus 4 ~v~v~TwNv~~~~~-~p~---~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~ 79 (310)
T smart00128 4 KVLVGTWNVGGLKA-DPK---VDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGD 79 (310)
T ss_pred EEEEEEEECCCccC-CCh---hhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCC
Confidence 47789999998631 011 234444443 67998 77999821 12233334332 1
Q ss_pred cceEEecCCCCCCCCCeEEEEEEeee----cceee--EeeCCCC--CCCCceEEEEEEeCCcceEEEEEeccCCCCCCCC
Q 012811 240 KGYRCSVPNEMADSRGYFCMQLSKLQ----AKSFT--CEPFRNS--IMGRELCVAEVEVQGKKPLVVATSHLESPCPGPP 311 (456)
Q Consensus 240 ~~y~~~~~~~~~~~~~~g~ailSr~p----i~~~~--~~~~~~~--~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~ 311 (456)
..|....... -.+.++.||.|.. |.... .+.+... ...++++.+++.+. +..+.++++||.+...
T Consensus 80 ~~Y~~v~~~~---l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~-~~~~~fv~~HL~a~~~--- 152 (310)
T smart00128 80 GQYNVLAKVR---LVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLS-DTSFCFVNSHLAAGAS--- 152 (310)
T ss_pred CceEEEeeee---ecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEc-CcEEEEEeeccccccc---
Confidence 4465544322 2345577787743 22222 1222111 12367888899997 6899999999999743
Q ss_pred ccccccHHHHHHHHHHHHHHhh----------cCCCEEEEccCCCCCC
Q 012811 312 TWDQMFSKERVEQAKEAINLLK----------KNPNVIFCGDMNWDDK 349 (456)
Q Consensus 312 ~~~~~~~~~R~~Q~~~l~~~l~----------~~~pvIl~GDFN~~~~ 349 (456)
....|..+...+.+.+. ....+|++||||-.-+
T Consensus 153 -----~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 153 -----NVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred -----hhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeec
Confidence 34679999998887652 2578999999996544
No 22
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=4.5e-09 Score=110.35 Aligned_cols=228 Identities=14% Similarity=0.148 Sum_probs=124.4
Q ss_pred ceEEEEEeccCCCCCChhhHHHHHHHHHhhC-------CCc--EEEEeccCHh---------------HHHHHHhCCC--
Q 012811 185 SLKILSYNVWFREDLEMHPRMKTIGDLIQLH-------SPD--IICFQEITPN---------------IYDILCKSSW-- 238 (456)
Q Consensus 185 ~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~-------~pD--II~LQEv~~~---------------~~~~L~~~~~-- 238 (456)
.|=|-||||++... .....|.++|-.. -+| ||+|||+-.- +.+.+.+.+.
T Consensus 538 ~IfvgTfNvNG~s~----~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As~tk~~~Wee~i~~~Ln~~ 613 (1080)
T KOG0566|consen 538 SIFVGTFNVNGRSA----AFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSASTTKRRFWEEKILKTLNRY 613 (1080)
T ss_pred EEEEEeeeccCccc----cchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccChHHHHHHHHHHHHHhcCC
Confidence 46678999999432 2225666666543 378 5778998421 1222332221
Q ss_pred ccceEEecCCCCCCCCCeEE--EEEEe---eecce-ee--Ee--eCCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCC
Q 012811 239 WKGYRCSVPNEMADSRGYFC--MQLSK---LQAKS-FT--CE--PFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCP 308 (456)
Q Consensus 239 ~~~y~~~~~~~~~~~~~~g~--ailSr---~pi~~-~~--~~--~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~ 308 (456)
...|...... .-.|+ .||-| .|... .. .. -|....-.++++..++.+. ...|.+++.||.++.
T Consensus 614 ~~kYvlL~s~-----QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~-~TsfCFv~SHlAAG~- 686 (1080)
T KOG0566|consen 614 KNKYVLLRSE-----QLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYH-ATSFCFVCSHLAAGQ- 686 (1080)
T ss_pred CCceEEEehh-----hhheeeEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEec-cccEEEEeccccccc-
Confidence 1335443322 12343 34444 44322 11 11 1222112367888888887 689999999999984
Q ss_pred CCCccccccHHHHHHHHHHHHHHhh--------cCCCEEEEccCCCCCCCC---CCcCCCC-Cc---------------c
Q 012811 309 GPPTWDQMFSKERVEQAKEAINLLK--------KNPNVIFCGDMNWDDKLD---GKFPLPD-GW---------------V 361 (456)
Q Consensus 309 ~~~~~~~~~~~~R~~Q~~~l~~~l~--------~~~pvIl~GDFN~~~~~~---~~~~l~~-gl---------------~ 361 (456)
..-++|....+.|.+.|. .+..|++|||||-.-+.. ....+.. +| -
T Consensus 687 -------snv~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G 759 (1080)
T KOG0566|consen 687 -------SNVEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAG 759 (1080)
T ss_pred -------chHhhhhhhHHHHHHhccccCCccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcC
Confidence 345788888888888773 267899999999532211 0000000 00 0
Q ss_pred ccccccc--CC--CCCccccCCCCcc-ccCCCccCCCccEEEEecCCCccceEEEeeccccCCchhhhhhhhhhhhhccC
Q 012811 362 DAWTELR--PG--ENGWTYDTKSNKM-LSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLE 436 (456)
Q Consensus 362 D~~~~~~--~~--~~~~T~~~~~~~~-~~~~~~~~~rID~I~~s~~~~~~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~ 436 (456)
.+|...+ .- .++|-|+...+.. .+........-|+|++++..+....+..
T Consensus 760 ~vF~gF~E~~ltF~PTYKyD~gTd~YDTSeK~R~PAWTDRIL~r~e~~~~l~Y~~------------------------- 814 (1080)
T KOG0566|consen 760 QVFPGFHEGQLTFPPTYKYDPGTDDYDTSEKCRTPAWTDRILWRGEKLELLSYKR------------------------- 814 (1080)
T ss_pred cccccccccccccCCcccccCCCCccccchhccCccchhhheecccccccccccc-------------------------
Confidence 1222221 11 2334444333222 1222234466899999975553333322
Q ss_pred CCCCccCCcceeEEEEecc
Q 012811 437 LPVLPSDHYGLLLTISNNI 455 (456)
Q Consensus 437 ~~~~~SDH~pV~~~~~~~~ 455 (456)
.+...|||.||+|.|+.++
T Consensus 815 ~el~~SDHRPV~A~~~a~i 833 (1080)
T KOG0566|consen 815 AELKTSDHRPVYAIFRAEI 833 (1080)
T ss_pred ccccccCCCceEEEEEEEE
Confidence 1346899999999998764
No 23
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=98.56 E-value=2.1e-08 Score=61.68 Aligned_cols=27 Identities=37% Similarity=1.079 Sum_probs=17.0
Q ss_pred CCcccCCCCCccccccccccccCCCCC
Q 012811 77 PTWSCKACTFLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 77 ~~W~C~~Ct~~N~~~~~~C~~C~~~~~ 103 (456)
+.|.|+.||+.|.+....|.+|+++||
T Consensus 3 g~W~C~~C~~~N~~~~~~C~~C~~~rp 29 (30)
T PF00641_consen 3 GDWKCPSCTFMNPASRSKCVACGAPRP 29 (30)
T ss_dssp SSEEETTTTEEEESSSSB-TTT--BTT
T ss_pred cCccCCCCcCCchHHhhhhhCcCCCCc
Confidence 467777777777777777777777766
No 24
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=98.53 E-value=7.5e-07 Score=87.19 Aligned_cols=57 Identities=14% Similarity=0.272 Sum_probs=43.8
Q ss_pred CceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc--------CCCEEEEccCCC
Q 012811 281 RELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK--------NPNVIFCGDMNW 346 (456)
Q Consensus 281 R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~--------~~pvIl~GDFN~ 346 (456)
+++..+++... ...+.+++.|+.+... ..++|....+.+...|.- ...++++||||.
T Consensus 153 KGav~i~~~~~-~t~~cFv~shlaag~~--------N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNy 217 (460)
T COG5411 153 KGAVAIRFNYE-RTSFCFVNSHLAAGVN--------NIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNY 217 (460)
T ss_pred ccccceeEEee-cCCcEEEecchhcccc--------cHHHHHHHHHHHHHheecCCCceecccceEEEecccCc
Confidence 45555666665 4589999999999843 467899888888887742 467999999994
No 25
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]
Probab=98.45 E-value=3.5e-07 Score=85.47 Aligned_cols=97 Identities=27% Similarity=0.508 Sum_probs=69.3
Q ss_pred CCceecCCCcccccccccccccccCCCCCCCCC-----C---------------------C-C----------CCCCCCc
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFSPP-----S---------------------K-S----------SVSVPTW 79 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~-----~---------------------~-~----------~~~~~~W 79 (456)
+.|.|..|+++|.+ ....|..|+.+.++..+. + . . .-..++|
T Consensus 63 gdw~c~~c~~~n~a-rr~~c~~c~~s~~~~~~~~~~~~~g~~~~~~~~r~~~~~~~~~~~~g~~~~~n~~~~r~~~~GDW 141 (280)
T KOG4198|consen 63 GDWNCPLCGFHNSA-RRLLCFRCGFSKVPLDSALTAPNSGSRSLQTGPRYFKGDWLCPRCPGLGFSRNNKPKRPWRSGDW 141 (280)
T ss_pred cccccCccchhhHH-HhhhcceecccCCCccccccCCCCcccccccccccccCCCCCCCCCCCcccccccccCCccccCc
Confidence 78999999999999 599999999886543220 0 0 0 1256789
Q ss_pred ccCCCCCccccccccccccCCCCCCCCCCCCC---CCCCCCCCCccccccccccccCc
Q 012811 80 SCKACTFLNPYNNTSCELCNTRAPVSGLSSFE---DLTDPALDSELDSSVGSVFLPLQ 134 (456)
Q Consensus 80 ~C~~Ct~~N~~~~~~C~~C~~~~~~~~~~~~~---~~~d~~~~~d~~~~~~~~~~~~~ 134 (456)
.|+.|+|+|..+...|--|+++|+..+.-... ..+..++....+..+...+.++.
T Consensus 142 ~Cp~C~fhNfarn~~C~rC~~~r~~~a~~~~~~s~~~~~~~~s~~~~~~~~t~~~~~~ 199 (280)
T KOG4198|consen 142 ECPGCNFHNFARNSECFRCGAKRPLAALLGNQASEATEHDWLSKVADSSSSTRFESLL 199 (280)
T ss_pred ccCCCCceeccccchhhhcCCcCcccccccccccccccccccccccccccceecccch
Confidence 99999999999999999999999997643222 22333334445555555666665
No 26
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=98.39 E-value=1.8e-06 Score=83.93 Aligned_cols=232 Identities=20% Similarity=0.176 Sum_probs=120.6
Q ss_pred CCceEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhH--HHHHHhCCCccceEEecCCCCCCCCC-eEEE
Q 012811 183 SGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNI--YDILCKSSWWKGYRCSVPNEMADSRG-YFCM 259 (456)
Q Consensus 183 ~~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~--~~~L~~~~~~~~y~~~~~~~~~~~~~-~g~a 259 (456)
...+.|+.|||......... .-...+....+|++|+||..-.. ....... ...|...+-.......+ .++.
T Consensus 61 ~~~~~i~~~~i~~~~~~~~~----~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~y~~~~ 134 (335)
T KOG1294|consen 61 RKVLNICPWDIAGLEACEKF----SGDPEISSELRDLQCLLETKCTIDSGPCSHPT--EKGYTHSLLSCASKKDGYSGEI 134 (335)
T ss_pred eeEeecCchhhhhhhhhhcc----ccchhccccchhhhhhhhccceeccCcceecc--cCCcccceeecccccCCcccee
Confidence 34568999998876532111 13456667789999999987432 1111111 12342221111111223 3466
Q ss_pred EEEeeecceeeEeeCC--CCCCCCceE-EEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc--
Q 012811 260 QLSKLQAKSFTCEPFR--NSIMGRELC-VAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK-- 334 (456)
Q Consensus 260 ilSr~pi~~~~~~~~~--~~~~~R~~~-~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~-- 334 (456)
.++++....... .+. .+. .|... .+.++. ..+.++++|.+....... + ..+. .+......+...+.+
T Consensus 135 ~~~~~~p~~v~~-~~~~~~s~-h~~~g~~i~~e~---e~~~l~~~y~p~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~ 206 (335)
T KOG1294|consen 135 DYSKFKPLKVHY-GFGAMGSD-HRPVGRVIIAEF---EIFILINTYVPNIGGGLV-N-LVYR-ILDRWDKEIEEKRKKQS 206 (335)
T ss_pred eeeecccceeee-cccccCCc-cCccceEEEEee---cceeeccccCcccccccc-h-hhhh-hhhhhHHHHHHHhhhcc
Confidence 677654332221 111 111 12111 112233 367889999988755321 0 1111 001222223333322
Q ss_pred -----CCCEEEEccCCCCCCCCC----Cc-----------------------CCCCC-cccccccccCCCC-CccccCCC
Q 012811 335 -----NPNVIFCGDMNWDDKLDG----KF-----------------------PLPDG-WVDAWTELRPGEN-GWTYDTKS 380 (456)
Q Consensus 335 -----~~pvIl~GDFN~~~~~~~----~~-----------------------~l~~g-l~D~~~~~~~~~~-~~T~~~~~ 380 (456)
..+++++||.|....+.. +. .++.+ ++|+|+.++++.. .+|++...
T Consensus 207 ~~k~~~~~~v~~gd~nvs~~~i~~~~~~~~~~~~~~~~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~~~~t~Wk~~ 286 (335)
T KOG1294|consen 207 SSKNLKAPVVICGDLNVSHEEIDPSKPLVSPAGNTLSNAGFTPEERDSFFAELLEKGPLIDTYRELHKDQKKAYTFWKYM 286 (335)
T ss_pred ccccccCcceeccccccchhhccccccccccccCCcCCCCCCHHHhhhHHHhhccCCcceeehhhhcCCccccccchhhc
Confidence 358999999997653322 10 02334 8999999987665 77766553
Q ss_pred CccccCCCccCCCccEEEEecCCCc-cceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEe
Q 012811 381 NKMLSGNRTLQKRLDRFICSLRDFK-IIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISN 453 (456)
Q Consensus 381 ~~~~~~~~~~~~rID~I~~s~~~~~-~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~ 453 (456)
-.... ++.++|+||++++..... .....+.. .+...|||+|+.+.|.+
T Consensus 287 ~~~r~--~~~~~r~dy~~Vsk~~~n~~r~~~Ic~-----------------------r~~~gsdh~pi~~~~~~ 335 (335)
T KOG1294|consen 287 PNGRQ--RGHGERCDYILVSKPGPNNGRRFYICS-----------------------RPIHGSDHCPITLEFFL 335 (335)
T ss_pred ccccc--CCCCCceeEEEecCcCCCCCceeeeec-----------------------CccCCCCCCCeeeeecC
Confidence 22111 267799999999943322 23444421 13468999999998853
No 27
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=98.37 E-value=1.4e-07 Score=57.90 Aligned_cols=27 Identities=37% Similarity=1.030 Sum_probs=22.4
Q ss_pred CCceecCCCcccccccccccccccCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSS 64 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~ 64 (456)
+.|.|..||++|++ ....|.+|+++||
T Consensus 3 g~W~C~~C~~~N~~-~~~~C~~C~~~rp 29 (30)
T PF00641_consen 3 GDWKCPSCTFMNPA-SRSKCVACGAPRP 29 (30)
T ss_dssp SSEEETTTTEEEES-SSSB-TTT--BTT
T ss_pred cCccCCCCcCCchH-HhhhhhCcCCCCc
Confidence 67999999999999 5999999999987
No 28
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=98.37 E-value=4.6e-07 Score=75.34 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=36.5
Q ss_pred EEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhcCC--CEEEEccCCCCCCCCCCc----CCCCCccc---cccc
Q 012811 296 LVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNP--NVIFCGDMNWDDKLDGKF----PLPDGWVD---AWTE 366 (456)
Q Consensus 296 l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~~~--pvIl~GDFN~~~~~~~~~----~l~~gl~D---~~~~ 366 (456)
|.|++++.+... .+......|.+++.... ++||+||||.....-... .....|.+ ....
T Consensus 1 i~i~~vY~pp~~------------~~~~~~~~l~~~~~~~~~~~~Ii~GDFN~~~~~w~~~~~~~~~~~~l~~~~~~~~l 68 (119)
T PF14529_consen 1 ITIISVYAPPSS------------EREEFFDQLRQLLKNLPPAPIIIGGDFNAHHPNWDSSNTNSRRGEQLLDWLDSHNL 68 (119)
T ss_dssp EEEEEEE--TTS-------------CHHHHHHHHHHHHCCTTSSEEEEEE-----GGGT-SCHHHHHHHHHHHHHHHCTE
T ss_pred CEEEEEECCCCc------------cHHHHHHHHHHHHHhCCCCCEEEEeECCCCchhhhhccccchhHHHHHHHhhhcee
Confidence 578889888873 12334445555555522 899999999843221111 00011111 1111
Q ss_pred c--cCCCCCccccCCCCccccCCCccCCCccEEEEec
Q 012811 367 L--RPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSL 401 (456)
Q Consensus 367 ~--~~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~ 401 (456)
. +.....+||.... ...+||+||++.
T Consensus 69 ~~~~~~~~~~T~~~~~---------~~s~iD~~~~s~ 96 (119)
T PF14529_consen 69 VDLNPPGRPPTFISNS---------HGSRIDLILTSD 96 (119)
T ss_dssp EE---TT---SEEECC---------CEE--EEEEEEC
T ss_pred eeeecCCCCCcccCCC---------CCceEEEEEECC
Confidence 1 3334457776542 147999999995
No 29
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=98.25 E-value=1.4e-05 Score=82.10 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=44.7
Q ss_pred CceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhh--------------cCCCEEEEccCCC
Q 012811 281 RELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLK--------------KNPNVIFCGDMNW 346 (456)
Q Consensus 281 R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~--------------~~~pvIl~GDFN~ 346 (456)
++++.+++.+. +..|.++|+||.++.. ......|..++..|+..+. .+..+|++||||-
T Consensus 408 KGAVaIr~~l~-~Ts~cFVn~HLAAg~~------~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNY 480 (621)
T PLN03191 408 KGSVSISMSLF-QSRLCFVCSHLTSGHK------DGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNY 480 (621)
T ss_pred ceeEEEEEEEc-CcEEEEEEeccccccc------cchHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCccc
Confidence 67788899998 6899999999998742 1123467777777765431 2468999999996
Q ss_pred CC
Q 012811 347 DD 348 (456)
Q Consensus 347 ~~ 348 (456)
.-
T Consensus 481 RI 482 (621)
T PLN03191 481 RL 482 (621)
T ss_pred cc
Confidence 54
No 30
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=98.10 E-value=1.4e-06 Score=51.66 Aligned_cols=24 Identities=42% Similarity=0.989 Sum_probs=17.2
Q ss_pred CcccCCCCCccccccccccccCCC
Q 012811 78 TWSCKACTFLNPYNNTSCELCNTR 101 (456)
Q Consensus 78 ~W~C~~Ct~~N~~~~~~C~~C~~~ 101 (456)
.|.|+.|||.|.+....|.+|++|
T Consensus 2 ~W~C~~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 2 DWECPACTFLNFASRSKCFACGAP 25 (26)
T ss_pred cccCCCCCCcChhhhccccccCCc
Confidence 577777777777777777777765
No 31
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=97.82 E-value=7.9e-06 Score=48.34 Aligned_cols=25 Identities=44% Similarity=1.067 Sum_probs=22.9
Q ss_pred CCceecCCCcccccccccccccccCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTP 62 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~ 62 (456)
+.|.|..||++|.+ .+..|.+|++|
T Consensus 1 g~W~C~~C~~~N~~-~~~~C~~C~~p 25 (26)
T smart00547 1 GDWECPACTFLNFA-SRSKCFACGAP 25 (26)
T ss_pred CcccCCCCCCcChh-hhccccccCCc
Confidence 46999999999999 59999999986
No 32
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]
Probab=97.05 E-value=0.00045 Score=64.93 Aligned_cols=70 Identities=24% Similarity=0.410 Sum_probs=57.8
Q ss_pred CCCCceecCCCcccccccccccccccCCCCCCC--CCCCCCCCCCCcccCCCCCccccccccccccCCCCCCC
Q 012811 35 SMSSWACKKCTFLNSPSRKSTCQICLTPSSSFS--PPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPVS 105 (456)
Q Consensus 35 ~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~--~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~ 105 (456)
-.++|.|+.|+|+|.+ ....|--|+.+|+... ....+......|.+..+-..+......|.-|..--+..
T Consensus 137 ~~GDW~Cp~C~fhNfa-rn~~C~rC~~~r~~~a~~~~~~s~~~~~~~~s~~~~~~~~t~~~~~~r~~~~~~~~ 208 (280)
T KOG4198|consen 137 RSGDWECPGCNFHNFA-RNSECFRCGAKRPLAALLGNQASEATEHDWLSKVADSSSSTRFESLLRCNARGEMS 208 (280)
T ss_pred cccCcccCCCCceecc-ccchhhhcCCcCcccccccccccccccccccccccccccceecccchhhcccCccc
Confidence 3478999999999999 5999999999998755 22233456778999999999999999999998766655
No 33
>KOG4345 consensus NF-kappa B regulator AP20/Cezanne [Signal transduction mechanisms]
Probab=97.02 E-value=0.00032 Score=72.34 Aligned_cols=91 Identities=14% Similarity=0.013 Sum_probs=61.7
Q ss_pred hcccCCCCCccccCcccCCCCCC-------CCceecCCCcccccccccccccccCCCCCCC-----CCC-----------
Q 012811 14 ETAISNPKSKNFFTSLRTRGSSM-------SSWACKKCTFLNSPSRKSTCQICLTPSSSFS-----PPS----------- 70 (456)
Q Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~-------~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~-----~~~----------- 70 (456)
.++.+++.+.... +.+++..+. -+|+|+.||+.||+ +...|..|-+.+..-+ .++
T Consensus 61 ~v~~~~~~p~f~~-s~~~r~~~~~s~~~~~~k~~~~~~~~lnw~-re~R~~~~ls~~gd~~~~~~q~pq~s~~~qs~~Va 138 (774)
T KOG4345|consen 61 QVHEMNLTPSFCE-SGQPREIIHKSLIDRNIKWPRPSLQRLNWP-REKRLSRGLSHAGDMPILAFQLPQLSVYEQSTPVA 138 (774)
T ss_pred hhhccCCCCcccc-cCCcccccccccccccccCCchHhhhhhHH-HHHHHHHHhhccCCCccchhccchhhccccccchh
Confidence 3444555544433 445553332 47999999999999 8999999987762100 000
Q ss_pred -------------CCCC----C----------------------CCCcccCCCCCccccccccccccCCCCCCCC
Q 012811 71 -------------KSSV----S----------------------VPTWSCKACTFLNPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 71 -------------~~~~----~----------------------~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~~ 106 (456)
.... - ..+|.|..||+.|++.+..|.+|++++++..
T Consensus 139 L~~~l~~~l~~~dt~~~N~l~w~~h~lvlqk~l~t~l~~~~~rw~~eW~~lik~ass~pr~~r~~~~~~~~~~e~ 213 (774)
T KOG4345|consen 139 LEKALFRLLPLADTGDGNCLMWGFHDLVLQKALYTGLCYGTERWNDEWTELIKLASSEPRMHRSGNGGTGGGVEI 213 (774)
T ss_pred hhhhhhhcccccccCCccchhhhhhhHHHHHHHHHhhchhhHHHHHHHHHHHHhhcccchhhhcccCCCCCCccc
Confidence 0000 0 1249999999999999999999999998763
No 34
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=97.01 E-value=0.00025 Score=61.09 Aligned_cols=33 Identities=30% Similarity=0.675 Sum_probs=27.7
Q ss_pred CCCCCcccCCCCCccccccccccccCCCCCCCC
Q 012811 74 VSVPTWSCKACTFLNPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 74 ~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~~ 106 (456)
...+.|.|+.|||.|...+..|-||+..+..+.
T Consensus 20 ~Deg~WdCsvCTFrNsAeAfkC~vCdvRKGTST 52 (228)
T KOG4477|consen 20 DDEGKWDCSVCTFRNSAEAFKCFVCDVRKGTST 52 (228)
T ss_pred cccCceeeeeeeecchhhhhheeeecccccccc
Confidence 345689999999999999999999998766553
No 35
>PF12773 DZR: Double zinc ribbon
Probab=96.64 E-value=0.0019 Score=44.70 Aligned_cols=50 Identities=28% Similarity=0.537 Sum_probs=43.0
Q ss_pred ecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccC
Q 012811 41 CKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCN 99 (456)
Q Consensus 41 C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~ 99 (456)
|+.|...|.. .+..|..||++-. ......+.|+.|...|...+..|..||
T Consensus 1 Cp~Cg~~~~~-~~~fC~~CG~~l~--------~~~~~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 1 CPHCGTPNPD-DAKFCPHCGTPLP--------PPDQSKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCcCCcCCc-cccCChhhcCChh--------hccCCCCCCcCCcCCCcCCcCccCccc
Confidence 8899999999 6999999998755 122346899999999999999999997
No 36
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=96.52 E-value=0.001 Score=57.36 Aligned_cols=29 Identities=31% Similarity=0.751 Sum_probs=25.7
Q ss_pred CCCceecCCCcccccccccccccccCCCCC
Q 012811 36 MSSWACKKCTFLNSPSRKSTCQICLTPSSS 65 (456)
Q Consensus 36 ~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~ 65 (456)
.+.|.|..|||.|.+ .+..|.+|+..+..
T Consensus 22 eg~WdCsvCTFrNsA-eAfkC~vCdvRKGT 50 (228)
T KOG4477|consen 22 EGKWDCSVCTFRNSA-EAFKCFVCDVRKGT 50 (228)
T ss_pred cCceeeeeeeecchh-hhhheeeecccccc
Confidence 478999999999999 79999999987643
No 37
>KOG4345 consensus NF-kappa B regulator AP20/Cezanne [Signal transduction mechanisms]
Probab=96.14 E-value=0.00073 Score=69.79 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=50.2
Q ss_pred CCceecCCCcccccccccccccccCCCCCCC-C-------------------------------CCC--C----------
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFS-P-------------------------------PSK--S---------- 72 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~-~-------------------------------~~~--~---------- 72 (456)
.+|.|..||+.|.+ .+..|.+|...++..+ . ++. +
T Consensus 6 ~~W~~~~~~~~~lp-~al~lS~~~~s~~~~~~l~eDifk~~n~~~~~~~sd~~~~r~v~~~~~~p~f~~s~~~r~~~~~s 84 (774)
T KOG4345|consen 6 EKWACELCDYMTLP-MALVLSDFRRSTGAEPGLAEDIFKGKNWDIHAALSDYEQLRQVHEMNLTPSFCESGQPREIIHKS 84 (774)
T ss_pred HHHHHHhhccccCc-hhhHHHHHHhccCCCCCcchhhccCCCccceeecccHHHHHhhhccCCCCcccccCCcccccccc
Confidence 67999999999999 4999999997753211 0 000 0
Q ss_pred -CCCCCCcccCCCCCccccccccccccCCCC
Q 012811 73 -SVSVPTWSCKACTFLNPYNNTSCELCNTRA 102 (456)
Q Consensus 73 -~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~ 102 (456)
-....+|.|+.||++||+....|..|-+.+
T Consensus 85 ~~~~~~k~~~~~~~~lnw~re~R~~~~ls~~ 115 (774)
T KOG4345|consen 85 LIDRNIKWPRPSLQRLNWPREKRLSRGLSHA 115 (774)
T ss_pred cccccccCCchHhhhhhHHHHHHHHHHhhcc
Confidence 112348999999999999999999998877
No 38
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=96.00 E-value=0.025 Score=53.22 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=48.3
Q ss_pred CceEEEEEEeCCcceEEEEEeccCCCCCCCCcc---ccccHHHHHHHHHHHHHHhhc----CCCEEEEccCCCCC
Q 012811 281 RELCVAEVEVQGKKPLVVATSHLESPCPGPPTW---DQMFSKERVEQAKEAINLLKK----NPNVIFCGDMNWDD 348 (456)
Q Consensus 281 R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~---~~~~~~~R~~Q~~~l~~~l~~----~~pvIl~GDFN~~~ 348 (456)
++.+.++..+. +..|.++|+||-+.......+ -..+...|+..+..+++.+.. ..++++.||||..-
T Consensus 68 KGfmrtrw~i~-~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRl 141 (356)
T PTZ00312 68 KGFLLLSLRLG-TVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRL 141 (356)
T ss_pred cceEEEEEEEC-CEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeee
Confidence 35677788888 689999999999886533211 122567788877777755433 67899999999654
No 39
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=95.42 E-value=0.012 Score=62.81 Aligned_cols=52 Identities=25% Similarity=0.574 Sum_probs=44.9
Q ss_pred eecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccCCCCCCC
Q 012811 40 ACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPVS 105 (456)
Q Consensus 40 ~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~ 105 (456)
.|+.|...|+. .+..|..||++-. .-.|+.|...|+.....|.-||++....
T Consensus 3 ~Cp~Cg~~n~~-~akFC~~CG~~l~-------------~~~Cp~CG~~~~~~~~fC~~CG~~~~~~ 54 (645)
T PRK14559 3 ICPQCQFENPN-NNRFCQKCGTSLT-------------HKPCPQCGTEVPVDEAHCPNCGAETGTI 54 (645)
T ss_pred cCCCCCCcCCC-CCccccccCCCCC-------------CCcCCCCCCCCCcccccccccCCcccch
Confidence 69999999999 6999999997531 1269999999999999999999987654
No 40
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=94.87 E-value=0.043 Score=51.75 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=50.7
Q ss_pred CceEEEEEEeCCcceEEEEEeccCCCCCCCCccc---cccHHHHHHHHHHHHHHhhc----CCCEEEEccCCCCCC
Q 012811 281 RELCVAEVEVQGKKPLVVATSHLESPCPGPPTWD---QMFSKERVEQAKEAINLLKK----NPNVIFCGDMNWDDK 349 (456)
Q Consensus 281 R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~---~~~~~~R~~Q~~~l~~~l~~----~~pvIl~GDFN~~~~ 349 (456)
.+.+.+++.+. |+.+.++|.||-.....-..|. ..++..|.+++..++..|.. ...+++.||||...+
T Consensus 157 kg~~~~r~~I~-~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~~~~~~~fVfGdfNfrLd 231 (391)
T KOG1976|consen 157 KGFLLARFRIH-GKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEGLRNDAIFVFGDFNFRLD 231 (391)
T ss_pred ccccceeEEEc-CceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhccCceEEEEecccccccc
Confidence 35667889998 7899999999966543322332 33678899999999888865 457899999997644
No 41
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=92.41 E-value=0.081 Score=31.01 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=16.4
Q ss_pred cccCCCCCccccccccccccCCC
Q 012811 79 WSCKACTFLNPYNNTSCELCNTR 101 (456)
Q Consensus 79 W~C~~Ct~~N~~~~~~C~~C~~~ 101 (456)
..|+.|...|...+..|..||++
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCcccccChhhCCC
Confidence 46777777777777777777764
No 42
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=91.19 E-value=0.13 Score=29.15 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=16.3
Q ss_pred cCCCCCccccccccccccCCC
Q 012811 81 CKACTFLNPYNNTSCELCNTR 101 (456)
Q Consensus 81 C~~Ct~~N~~~~~~C~~C~~~ 101 (456)
|+.|.-.|...+..|..||++
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 777888887777778888765
No 43
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=88.67 E-value=0.25 Score=28.89 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=21.2
Q ss_pred CceecCCCcccccccccccccccCC
Q 012811 38 SWACKKCTFLNSPSRKSTCQICLTP 62 (456)
Q Consensus 38 ~W~C~~Ct~~N~~s~~~~C~~C~~~ 62 (456)
++.|+.|...|.. .+..|..||++
T Consensus 2 ~~~Cp~Cg~~~~~-~~~fC~~CG~~ 25 (26)
T PF13248_consen 2 EMFCPNCGAEIDP-DAKFCPNCGAK 25 (26)
T ss_pred cCCCcccCCcCCc-ccccChhhCCC
Confidence 5789999999999 69999999974
No 44
>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.52 E-value=0.29 Score=48.06 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=38.4
Q ss_pred CCCCCCCCceecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCc
Q 012811 31 TRGSSMSSWACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFL 87 (456)
Q Consensus 31 ~~~~~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~ 87 (456)
+.......|.|+.|+++|-..+...|-.|+...-...--.++.+....-.|++|||.
T Consensus 83 ~~~~~~~~~~~pls~vI~v~~~~~~~~~~g~~~~i~~~~~~~~~~~~~gp~~a~~~~ 139 (432)
T KOG2760|consen 83 SSADVEVTWVCPLSMVINVGEPAKSELTFGKINRIVVILHKPNPRFSPGPCPASTFA 139 (432)
T ss_pred cccccceeeeeceeEEEEecCccchhhcccccceEEEEeCCCCCcCCCCCcccceee
Confidence 344555789999999999987788899999764221100111122245689999998
No 45
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=86.97 E-value=0.4 Score=29.83 Aligned_cols=24 Identities=17% Similarity=0.620 Sum_probs=15.0
Q ss_pred cccCCCCCcccc--ccccccccCCCC
Q 012811 79 WSCKACTFLNPY--NNTSCELCNTRA 102 (456)
Q Consensus 79 W~C~~Ct~~N~~--~~~~C~~C~~~~ 102 (456)
|.|..|.|.-.+ .-+.|.+|+.++
T Consensus 2 ~~C~~CGy~y~~~~~~~~CP~Cg~~~ 27 (33)
T cd00350 2 YVCPVCGYIYDGEEAPWVCPVCGAPK 27 (33)
T ss_pred EECCCCCCEECCCcCCCcCcCCCCcH
Confidence 677777766333 355677777654
No 46
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=86.10 E-value=0.16 Score=49.65 Aligned_cols=25 Identities=48% Similarity=1.236 Sum_probs=22.5
Q ss_pred CcccCCCCCccccccccccccCCCC
Q 012811 78 TWSCKACTFLNPYNNTSCELCNTRA 102 (456)
Q Consensus 78 ~W~C~~Ct~~N~~~~~~C~~C~~~~ 102 (456)
.|.|..|||.|+..+-+|+||...|
T Consensus 546 ~we~~~~~~i~~~~~~t~~m~~~~~ 570 (571)
T COG5100 546 RWECKMCTFINEKNSCTCEMCNSTR 570 (571)
T ss_pred HHHHHHHHHhcccCceEEEeecccC
Confidence 5999999999999999999998664
No 47
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=83.68 E-value=0.8 Score=28.46 Aligned_cols=25 Identities=20% Similarity=0.729 Sum_probs=15.2
Q ss_pred CceecCCCccccc-ccccccccccCC
Q 012811 38 SWACKKCTFLNSP-SRKSTCQICLTP 62 (456)
Q Consensus 38 ~W~C~~Ct~~N~~-s~~~~C~~C~~~ 62 (456)
.|.|..|.|+-.. ..--.|.+|+++
T Consensus 1 ~~~C~~CGy~y~~~~~~~~CP~Cg~~ 26 (33)
T cd00350 1 KYVCPVCGYIYDGEEAPWVCPVCGAP 26 (33)
T ss_pred CEECCCCCCEECCCcCCCcCcCCCCc
Confidence 3889999888333 123456666654
No 48
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=83.03 E-value=0.26 Score=48.24 Aligned_cols=25 Identities=40% Similarity=1.107 Sum_probs=22.6
Q ss_pred CceecCCCcccccccccccccccCCC
Q 012811 38 SWACKKCTFLNSPSRKSTCQICLTPS 63 (456)
Q Consensus 38 ~W~C~~Ct~~N~~s~~~~C~~C~~~~ 63 (456)
.|.|..|||+|+. .+..|+||...+
T Consensus 546 ~we~~~~~~i~~~-~~~t~~m~~~~~ 570 (571)
T COG5100 546 RWECKMCTFINEK-NSCTCEMCNSTR 570 (571)
T ss_pred HHHHHHHHHhccc-CceEEEeecccC
Confidence 6999999999999 799999998653
No 49
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=81.38 E-value=2.7 Score=40.89 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=27.7
Q ss_pred CCCcccC-CCCCccccccccccccCCCCCCCCC
Q 012811 76 VPTWSCK-ACTFLNPYNNTSCELCNTRAPVSGL 107 (456)
Q Consensus 76 ~~~W~C~-~Ct~~N~~~~~~C~~C~~~~~~~~~ 107 (456)
...|.|+ .|--+|+..-..|..|.+++|..+.
T Consensus 216 d~Dw~c~~~c~N~nfa~r~~cnrck~~Kp~~~~ 248 (351)
T KOG1995|consen 216 DGDWDCPPSCGNRNFAWREECNRCKAPKPERSL 248 (351)
T ss_pred cccccccccccccccccccccccccCCCccccc
Confidence 4579999 9999999888889999999996633
No 50
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=81.26 E-value=0.86 Score=25.82 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=18.7
Q ss_pred ecCCCcccccccccccccccCC
Q 012811 41 CKKCTFLNSPSRKSTCQICLTP 62 (456)
Q Consensus 41 C~~Ct~~N~~s~~~~C~~C~~~ 62 (456)
|+.|.-.|.. .+..|..||++
T Consensus 2 Cp~CG~~~~~-~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIED-DAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCC-cCcchhhhCCc
Confidence 8899999999 69999999975
No 51
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=79.28 E-value=1.8 Score=49.01 Aligned_cols=53 Identities=21% Similarity=0.487 Sum_probs=41.2
Q ss_pred ceecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccc---cccccccCCCCCCCC
Q 012811 39 WACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYN---NTSCELCNTRAPVSG 106 (456)
Q Consensus 39 W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~---~~~C~~C~~~~~~~~ 106 (456)
=.|+.|.-.... ..|..||++. ...+.|+.|.....+. +..|.-|+++.....
T Consensus 668 rkCPkCG~~t~~---~fCP~CGs~t------------e~vy~CPsCGaev~~des~a~~CP~CGtplv~~~ 723 (1337)
T PRK14714 668 RRCPSCGTETYE---NRCPDCGTHT------------EPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQ 723 (1337)
T ss_pred EECCCCCCcccc---ccCcccCCcC------------CCceeCccCCCccCCCccccccCCCCCCcccccc
Confidence 589999887654 4999999762 1246999999977655 678999998877665
No 52
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=78.45 E-value=1.4 Score=27.61 Aligned_cols=26 Identities=27% Similarity=0.905 Sum_probs=17.5
Q ss_pred CceecCCCccccc-ccccccccccCCC
Q 012811 38 SWACKKCTFLNSP-SRKSTCQICLTPS 63 (456)
Q Consensus 38 ~W~C~~Ct~~N~~-s~~~~C~~C~~~~ 63 (456)
.|.|..|.++=.. ..-..|.+|++++
T Consensus 2 ~~~C~~CG~i~~g~~~p~~CP~Cg~~~ 28 (34)
T cd00729 2 VWVCPVCGYIHEGEEAPEKCPICGAPK 28 (34)
T ss_pred eEECCCCCCEeECCcCCCcCcCCCCch
Confidence 4999999888222 0135788888764
No 53
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=76.70 E-value=1.6 Score=27.40 Aligned_cols=26 Identities=19% Similarity=0.816 Sum_probs=19.3
Q ss_pred CcccCCCCCccccc--cccccccCCCCC
Q 012811 78 TWSCKACTFLNPYN--NTSCELCNTRAP 103 (456)
Q Consensus 78 ~W~C~~Ct~~N~~~--~~~C~~C~~~~~ 103 (456)
.|.|..|.|.=... -..|.+|+.++.
T Consensus 2 ~~~C~~CG~i~~g~~~p~~CP~Cg~~~~ 29 (34)
T cd00729 2 VWVCPVCGYIHEGEEAPEKCPICGAPKE 29 (34)
T ss_pred eEECCCCCCEeECCcCCCcCcCCCCchH
Confidence 59999999874332 357999998753
No 54
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=75.11 E-value=4 Score=41.43 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=50.8
Q ss_pred cCCCCCccccCcccCCCCCCCCc-eecCCCcccccccc---cccccccCCCCCC---------CCCCCCCCCCCCcccCC
Q 012811 17 ISNPKSKNFFTSLRTRGSSMSSW-ACKKCTFLNSPSRK---STCQICLTPSSSF---------SPPSKSSVSVPTWSCKA 83 (456)
Q Consensus 17 ~~~p~~~~~~~~~~~~~~~~~~W-~C~~Ct~~N~~s~~---~~C~~C~~~~~~~---------~~~~~~~~~~~~W~C~~ 83 (456)
-++|+-....+...-...++.+| .|-+|-=.|.. .+ ..|..||..-... ..+.++......|-|..
T Consensus 97 asspaapvv~~ape~~~Sapkk~~iCcVClg~rs~-da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCea 175 (707)
T KOG0957|consen 97 ASSPAAPVVERAPERTPSAPKKAVICCVCLGQRSV-DAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEA 175 (707)
T ss_pred ccCCCCCccCCCcccccCccccceEEEEeecCccc-cccceeeccccCceecccccccccccccCCCCccCCCCchhhhh
Confidence 34555444444444445556899 99999877754 23 8999999764321 11112233457899999
Q ss_pred CCCccccccccccccCC
Q 012811 84 CTFLNPYNNTSCELCNT 100 (456)
Q Consensus 84 Ct~~N~~~~~~C~~C~~ 100 (456)
|.+-=. ...|+.|-.
T Consensus 176 C~~Gvs--~P~CElCPn 190 (707)
T KOG0957|consen 176 CLYGVS--LPHCELCPN 190 (707)
T ss_pred HhcCCC--CCccccCCC
Confidence 998533 278999954
No 55
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=70.75 E-value=3.1 Score=29.12 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=11.2
Q ss_pred CCCcccCCCCCcc
Q 012811 76 VPTWSCKACTFLN 88 (456)
Q Consensus 76 ~~~W~C~~Ct~~N 88 (456)
.-+|.|+.|.+.|
T Consensus 42 ~i~y~C~~Cg~~N 54 (54)
T PF10058_consen 42 EIQYRCPYCGALN 54 (54)
T ss_pred ceEEEcCCCCCcC
Confidence 3489999999988
No 56
>PF12773 DZR: Double zinc ribbon
Probab=70.36 E-value=2.6 Score=28.76 Aligned_cols=23 Identities=35% Similarity=0.765 Sum_probs=17.1
Q ss_pred cCCCCCccccccccccccCCCCC
Q 012811 81 CKACTFLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 81 C~~Ct~~N~~~~~~C~~C~~~~~ 103 (456)
|+.|...|...+..|..||++.+
T Consensus 1 Cp~Cg~~~~~~~~fC~~CG~~l~ 23 (50)
T PF12773_consen 1 CPHCGTPNPDDAKFCPHCGTPLP 23 (50)
T ss_pred CCCcCCcCCccccCChhhcCChh
Confidence 67777777777777777777766
No 57
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=70.14 E-value=0.61 Score=31.55 Aligned_cols=43 Identities=28% Similarity=0.749 Sum_probs=29.0
Q ss_pred CCceecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCN 99 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~ 99 (456)
...+|..|.-.-+.+...+|..|| .|.|.+|--.-. -.|..|+
T Consensus 6 sry~CDLCn~~~p~~~LRQCvlCG-----------------RWaC~sCW~deY---Y~CksC~ 48 (57)
T PF14445_consen 6 SRYSCDLCNSSHPISELRQCVLCG-----------------RWACNSCWQDEY---YTCKSCN 48 (57)
T ss_pred hhHhHHhhcccCcHHHHHHHhhhc-----------------hhhhhhhhhhhH---hHHHhhh
Confidence 446788886666655567899998 799999964322 2355554
No 58
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=69.31 E-value=2.6 Score=36.92 Aligned_cols=27 Identities=19% Similarity=0.709 Sum_probs=19.6
Q ss_pred CcccCCCCCcccccc-ccccccCCCCCC
Q 012811 78 TWSCKACTFLNPYNN-TSCELCNTRAPV 104 (456)
Q Consensus 78 ~W~C~~Ct~~N~~~~-~~C~~C~~~~~~ 104 (456)
.|.|+.|.|.=.... ..|.+|+.|+..
T Consensus 134 ~~vC~vCGy~~~ge~P~~CPiCga~k~~ 161 (166)
T COG1592 134 VWVCPVCGYTHEGEAPEVCPICGAPKEK 161 (166)
T ss_pred EEEcCCCCCcccCCCCCcCCCCCChHHH
Confidence 789999988665543 349999887653
No 59
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=67.48 E-value=3.3 Score=28.49 Aligned_cols=10 Identities=30% Similarity=1.069 Sum_probs=6.7
Q ss_pred CCCcccCCCC
Q 012811 76 VPTWSCKACT 85 (456)
Q Consensus 76 ~~~W~C~~Ct 85 (456)
+..|.|+.|.
T Consensus 32 p~~w~CP~C~ 41 (50)
T cd00730 32 PDDWVCPVCG 41 (50)
T ss_pred CCCCCCCCCC
Confidence 4467777775
No 60
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=67.29 E-value=3.1 Score=36.45 Aligned_cols=27 Identities=26% Similarity=0.822 Sum_probs=19.8
Q ss_pred CceecCCCcccccccccccccccCCCC
Q 012811 38 SWACKKCTFLNSPSRKSTCQICLTPSS 64 (456)
Q Consensus 38 ~W~C~~Ct~~N~~s~~~~C~~C~~~~~ 64 (456)
-|.|++|.|.=..-.-..|.+|++|+.
T Consensus 134 ~~vC~vCGy~~~ge~P~~CPiCga~k~ 160 (166)
T COG1592 134 VWVCPVCGYTHEGEAPEVCPICGAPKE 160 (166)
T ss_pred EEEcCCCCCcccCCCCCcCCCCCChHH
Confidence 699999977654423467999998753
No 61
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=61.22 E-value=4.5 Score=27.41 Aligned_cols=11 Identities=27% Similarity=0.902 Sum_probs=5.1
Q ss_pred CCCcccCCCCC
Q 012811 76 VPTWSCKACTF 86 (456)
Q Consensus 76 ~~~W~C~~Ct~ 86 (456)
+..|.|+.|..
T Consensus 32 p~~w~CP~C~a 42 (47)
T PF00301_consen 32 PDDWVCPVCGA 42 (47)
T ss_dssp -TT-B-TTTSS
T ss_pred CCCCcCcCCCC
Confidence 44677777753
No 62
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.88 E-value=27 Score=29.79 Aligned_cols=59 Identities=25% Similarity=0.283 Sum_probs=37.1
Q ss_pred ceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHH-HHHHHHHHHHHhhc---------------CCCEEEEccCC
Q 012811 282 ELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKE-RVEQAKEAINLLKK---------------NPNVIFCGDMN 345 (456)
Q Consensus 282 ~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~-R~~Q~~~l~~~l~~---------------~~pvIl~GDFN 345 (456)
+.+.+...+. +..+.+++.|+.+... ...+ |..-..++.+.+.- ...||+.||||
T Consensus 48 g~v~is~~~~-~~~~~~v~~hl~~~~~--------~~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN 118 (145)
T KOG0565|consen 48 GGVAISFVLS-QTSFCFVISHLTSGVH--------KVYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLN 118 (145)
T ss_pred CeEEEEEEEc-CceEEEEEecccccch--------hhHHHhhccHHHHHhhccccccCcccccccccccccEEEEeccee
Confidence 4445555555 5689999999999843 1223 55555555554421 13588999999
Q ss_pred CCCC
Q 012811 346 WDDK 349 (456)
Q Consensus 346 ~~~~ 349 (456)
-...
T Consensus 119 ~Rl~ 122 (145)
T KOG0565|consen 119 YRLS 122 (145)
T ss_pred eeec
Confidence 5543
No 63
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=58.21 E-value=7.5 Score=41.04 Aligned_cols=39 Identities=31% Similarity=0.275 Sum_probs=25.5
Q ss_pred CceEEEEEeccCCCCCChhhHHHHHHHHHhhCC-Cc--EEEEeccC
Q 012811 184 GSLKILSYNVWFREDLEMHPRMKTIGDLIQLHS-PD--IICFQEIT 226 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~-pD--II~LQEv~ 226 (456)
-.+-|.||||.+..+. .--.|.+++...+ || ||+|||+.
T Consensus 108 ~rv~v~TWNV~g~~p~----~~l~l~~wl~~~~p~DiyviG~QE~v 149 (621)
T PLN03191 108 IRVTIGTWNVAGRLPS----EDLEIEDWLSTEEPADIYIIGFQEVV 149 (621)
T ss_pred eEEEEEEeecCCCCCc----ccCCHHHhccCCCCCCEEEEeeEEec
Confidence 4577899999987542 1123455555444 47 67899995
No 64
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=57.70 E-value=6 Score=42.62 Aligned_cols=24 Identities=42% Similarity=0.880 Sum_probs=17.2
Q ss_pred ccCCCCCccccccccccccCCCCC
Q 012811 80 SCKACTFLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 80 ~C~~Ct~~N~~~~~~C~~C~~~~~ 103 (456)
.|+.|.+.|+..++.|..||++..
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~ 26 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLT 26 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCC
Confidence 477777777777777777777654
No 65
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=55.53 E-value=9.4 Score=25.79 Aligned_cols=24 Identities=29% Similarity=0.678 Sum_probs=17.8
Q ss_pred CCcccCCCCCccccccccccccCC
Q 012811 77 PTWSCKACTFLNPYNNTSCELCNT 100 (456)
Q Consensus 77 ~~W~C~~Ct~~N~~~~~~C~~C~~ 100 (456)
..+.|-.|.-.|++.+..|--||.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 356777777777777777777775
No 66
>COG1773 Rubredoxin [Energy production and conversion]
Probab=54.70 E-value=13 Score=26.01 Aligned_cols=13 Identities=31% Similarity=1.211 Sum_probs=9.4
Q ss_pred CceecCCCccccc
Q 012811 38 SWACKKCTFLNSP 50 (456)
Q Consensus 38 ~W~C~~Ct~~N~~ 50 (456)
.|.|..|.|+=-+
T Consensus 3 ~~~C~~CG~vYd~ 15 (55)
T COG1773 3 RWRCSVCGYVYDP 15 (55)
T ss_pred ceEecCCceEecc
Confidence 5888888877544
No 67
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=54.21 E-value=6.5 Score=28.10 Aligned_cols=29 Identities=24% Similarity=0.606 Sum_probs=23.4
Q ss_pred cccCCCCCccccccccccccCCCCCCCCC
Q 012811 79 WSCKACTFLNPYNNTSCELCNTRAPVSGL 107 (456)
Q Consensus 79 W~C~~Ct~~N~~~~~~C~~C~~~~~~~~~ 107 (456)
-+|..|.++-+.....|.+|+.+.-....
T Consensus 5 kAC~~Ck~l~~~d~e~CP~Cgs~~~te~W 33 (64)
T COG2093 5 KACKNCKRLTPEDTEICPVCGSTDLTEEW 33 (64)
T ss_pred HHHhhccccCCCCCccCCCCCCcccchhh
Confidence 47999999999999999999987555443
No 68
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=50.19 E-value=12 Score=25.30 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=22.6
Q ss_pred CCceecCCCcccccccccccccccCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTP 62 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~ 62 (456)
..+.|-.|--.|++ .+..|--||..
T Consensus 13 ~k~ICrkC~ARnp~-~A~~CRKCg~~ 37 (48)
T PRK04136 13 NKKICMRCNARNPW-RATKCRKCGYK 37 (48)
T ss_pred cccchhcccCCCCc-cccccccCCCC
Confidence 56899999999999 79999999974
No 69
>PLN02436 cellulose synthase A
Probab=47.34 E-value=16 Score=41.17 Aligned_cols=46 Identities=26% Similarity=0.708 Sum_probs=29.7
Q ss_pred eecCCC-----cccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCC-CccccccccccccCCCCC
Q 012811 40 ACKKCT-----FLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACT-FLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 40 ~C~~Ct-----~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct-~~N~~~~~~C~~C~~~~~ 103 (456)
.|++|. ..|-. ....|..|+-| .|..|- |.=...+..|..|.++=.
T Consensus 38 iCqICGD~Vg~t~dGe-~FVACn~C~fp-----------------vCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGE-PFVACNECAFP-----------------VCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCC-EEEeeccCCCc-----------------cccchhhhhhhcCCccCcccCCchh
Confidence 677771 23333 25677777755 666665 555567778999998755
No 70
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=46.38 E-value=23 Score=25.01 Aligned_cols=31 Identities=16% Similarity=0.492 Sum_probs=21.5
Q ss_pred ccCCCCCccccccccccccCCCCCCCCCCCCCC
Q 012811 80 SCKACTFLNPYNNTSCELCNTRAPVSGLSSFED 112 (456)
Q Consensus 80 ~C~~Ct~~N~~~~~~C~~C~~~~~~~~~~~~~~ 112 (456)
.|+.|..-.- ...|..||.+-.......|+.
T Consensus 7 ~C~~CgvYTL--k~~CP~CG~~t~~~~P~rfSp 37 (56)
T PRK13130 7 KCPKCGVYTL--KEICPVCGGKTKNPHPPRFSP 37 (56)
T ss_pred ECCCCCCEEc--cccCcCCCCCCCCCCCCCCCC
Confidence 5777765444 667999998887776665554
No 71
>PLN02189 cellulose synthase
Probab=45.05 E-value=18 Score=40.75 Aligned_cols=34 Identities=26% Similarity=0.670 Sum_probs=23.8
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCcccCCCC-CccccccccccccCCCCC
Q 012811 53 KSTCQICLTPSSSFSPPSKSSVSVPTWSCKACT-FLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 53 ~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct-~~N~~~~~~C~~C~~~~~ 103 (456)
...|..|+-| .|..|- |.=...+..|..|+++=.
T Consensus 53 fvaC~~C~fp-----------------vCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 53 FVACNECGFP-----------------VCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred EEeeccCCCc-----------------cccchhhhhhhcCCccCcccCCchh
Confidence 4667777754 666665 555667778999998755
No 72
>PRK04023 DNA polymerase II large subunit; Validated
Probab=44.83 E-value=21 Score=39.88 Aligned_cols=51 Identities=22% Similarity=0.494 Sum_probs=34.2
Q ss_pred ceecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccCCCCCCCC
Q 012811 39 WACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 39 W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~~ 106 (456)
=.|+.|--. . ....|..||.. ....|.|+.|.-.-.. ..|.-|+......+
T Consensus 627 RfCpsCG~~--t-~~frCP~CG~~------------Te~i~fCP~CG~~~~~--y~CPKCG~El~~~s 677 (1121)
T PRK04023 627 RKCPSCGKE--T-FYRRCPFCGTH------------TEPVYRCPRCGIEVEE--DECEKCGREPTPYS 677 (1121)
T ss_pred ccCCCCCCc--C-CcccCCCCCCC------------CCcceeCccccCcCCC--CcCCCCCCCCCccc
Confidence 467777654 2 35678888864 1346899999765333 45999998877665
No 73
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=44.72 E-value=7.3 Score=42.55 Aligned_cols=52 Identities=19% Similarity=0.473 Sum_probs=0.0
Q ss_pred CceecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccCCCCCCCC
Q 012811 38 SWACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 38 ~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~~ 106 (456)
.-.|+.|...- ....|..||+. ....|.|+.|...-... .|.-|+..-....
T Consensus 655 ~r~Cp~Cg~~t---~~~~Cp~CG~~------------T~~~~~Cp~C~~~~~~~--~C~~C~~~~~~~~ 706 (900)
T PF03833_consen 655 RRRCPKCGKET---FYNRCPECGSH------------TEPVYVCPDCGIEVEED--ECPKCGRETTSYS 706 (900)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccCcccCCcc---hhhcCcccCCc------------cccceeccccccccCcc--ccccccccCcccc
Confidence 35788887652 35789999964 23579999999866554 9999998754443
No 74
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=44.49 E-value=4.7 Score=26.22 Aligned_cols=14 Identities=43% Similarity=0.994 Sum_probs=7.1
Q ss_pred CCcccCCCCCcccc
Q 012811 77 PTWSCKACTFLNPY 90 (456)
Q Consensus 77 ~~W~C~~Ct~~N~~ 90 (456)
..|.|..|...|..
T Consensus 23 ~~w~C~~C~~~N~l 36 (40)
T PF04810_consen 23 KTWICNFCGTKNPL 36 (40)
T ss_dssp TEEEETTT--EEE-
T ss_pred CEEECcCCCCcCCC
Confidence 46777777666653
No 75
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=44.14 E-value=10 Score=27.51 Aligned_cols=21 Identities=29% Similarity=0.779 Sum_probs=15.8
Q ss_pred cccCCCCCccccccccccccCCC
Q 012811 79 WSCKACTFLNPYNNTSCELCNTR 101 (456)
Q Consensus 79 W~C~~Ct~~N~~~~~~C~~C~~~ 101 (456)
-+|..|.+++. ...|.+|+..
T Consensus 6 ~AC~~C~~i~~--~~~Cp~Cgs~ 26 (64)
T PRK06393 6 RACKKCKRLTP--EKTCPVHGDE 26 (64)
T ss_pred hhHhhCCcccC--CCcCCCCCCC
Confidence 47888888884 3488888874
No 76
>PLN02400 cellulose synthase
Probab=44.10 E-value=21 Score=40.37 Aligned_cols=46 Identities=24% Similarity=0.611 Sum_probs=29.0
Q ss_pred eecCCC-----cccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCC-CccccccccccccCCCCC
Q 012811 40 ACKKCT-----FLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACT-FLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 40 ~C~~Ct-----~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct-~~N~~~~~~C~~C~~~~~ 103 (456)
.|++|. -.|-. ....|..|+.| .|..|- |.=.-.+..|..|.|.=.
T Consensus 38 iCqICGD~VG~t~dGe-~FVAC~eCaFP-----------------VCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGD-VFVACNECAFP-----------------VCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCC-EEEEEccCCCc-----------------cccchhheecccCCccCcccCCccc
Confidence 677772 23333 35677777765 566665 555556777999988655
No 77
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=43.83 E-value=6.4 Score=29.53 Aligned_cols=48 Identities=25% Similarity=0.425 Sum_probs=14.7
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCcccCCCCCc---------cccccccccccCCCCCCCC
Q 012811 53 KSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFL---------NPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 53 ~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~---------N~~~~~~C~~C~~~~~~~~ 106 (456)
...|.+||-.-.... ....--+|..|.|- =......|..|.++-....
T Consensus 9 ~qiCqiCGD~VGl~~------~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 9 GQICQICGDDVGLTE------NGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp S-B-SSS--B--B-S------SSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred CcccccccCccccCC------CCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 567777774321111 11224566666653 2345667999998766544
No 78
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=42.64 E-value=26 Score=36.53 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=15.2
Q ss_pred cccCCCCCCCCceecCCCccccc
Q 012811 28 SLRTRGSSMSSWACKKCTFLNSP 50 (456)
Q Consensus 28 ~~~~~~~~~~~W~C~~Ct~~N~~ 50 (456)
++-+.......|.|..|.|+=-+
T Consensus 415 ~~~~~~~~~~~~~c~~c~~~yd~ 437 (479)
T PRK05452 415 SATTTADLGPRMQCSVCQWIYDP 437 (479)
T ss_pred ccccccCCCCeEEECCCCeEECC
Confidence 34444445578899999887555
No 79
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=42.61 E-value=18 Score=22.93 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=12.3
Q ss_pred ceecCCC-----cccccccccccccccC
Q 012811 39 WACKKCT-----FLNSPSRKSTCQICLT 61 (456)
Q Consensus 39 W~C~~Ct-----~~N~~s~~~~C~~C~~ 61 (456)
|+|+.|. ..|++.....|..||.
T Consensus 2 r~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~ 29 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPPKVEGVCDNCGG 29 (36)
T ss_dssp EEETTTTEEEETTTB--SSTTBCTTTTE
T ss_pred cCcCCCCCccccccCCCCCCCccCCCCC
Confidence 6777772 3344323466777765
No 80
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=42.16 E-value=16 Score=21.38 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=12.2
Q ss_pred ccCCCCCccccccccccccCC
Q 012811 80 SCKACTFLNPYNNTSCELCNT 100 (456)
Q Consensus 80 ~C~~Ct~~N~~~~~~C~~C~~ 100 (456)
.||.|.-.=+.....|..||.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCC
Confidence 355555555556666666664
No 81
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=40.77 E-value=20 Score=26.19 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=21.0
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCc
Q 012811 48 NSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFL 87 (456)
Q Consensus 48 N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~ 87 (456)
|+.-.+..|..||...... .....|.|+.|.+.
T Consensus 23 ~~~~TSq~C~~CG~~~~~~-------~~~r~~~C~~Cg~~ 55 (69)
T PF07282_consen 23 DEAYTSQTCPRCGHRNKKR-------RSGRVFTCPNCGFE 55 (69)
T ss_pred CCCCCccCccCcccccccc-------cccceEEcCCCCCE
Confidence 4432367888888765431 23457888888875
No 82
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=39.77 E-value=16 Score=26.22 Aligned_cols=21 Identities=24% Similarity=1.016 Sum_probs=17.3
Q ss_pred ccCCCCCccccccccccccCCCC
Q 012811 80 SCKACTFLNPYNNTSCELCNTRA 102 (456)
Q Consensus 80 ~C~~Ct~~N~~~~~~C~~C~~~~ 102 (456)
+|..|.+++... .|..|+...
T Consensus 5 AC~~C~~i~~~~--~CP~Cgs~~ 25 (61)
T PRK08351 5 ACRHCHYITTED--RCPVCGSRD 25 (61)
T ss_pred hhhhCCcccCCC--cCCCCcCCc
Confidence 899999999544 799999854
No 83
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=39.23 E-value=4 Score=27.44 Aligned_cols=45 Identities=27% Similarity=0.642 Sum_probs=24.8
Q ss_pred eecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccCCCCCCC
Q 012811 40 ACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPVS 105 (456)
Q Consensus 40 ~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~ 105 (456)
-|..|-|.|-. ...|. ...-|-.|....-..+..|++|+.+.|..
T Consensus 4 nCKsCWf~~k~--Li~C~-------------------dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFANKG--LIKCS-------------------DHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S--SS--EEE-S-------------------S-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcCCC--eeeec-------------------chhHHHHHHHHHhccccCCCcccCcCccc
Confidence 47777777766 23332 35678888888888999999999998853
No 84
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=37.68 E-value=32 Score=32.22 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHhhCCCcEEEEeccC
Q 012811 202 HPRMKTIGDLIQLHSPDIICFQEIT 226 (456)
Q Consensus 202 ~~r~~~i~~~I~~~~pDII~LQEv~ 226 (456)
..|+.+|++.-......||||||.+
T Consensus 99 h~r~kaiieaaa~agvniiclqeaw 123 (387)
T KOG0808|consen 99 HDRLKAIIEAAAVAGVNIICLQEAW 123 (387)
T ss_pred HHHHHHHHHHHHhcCccEEEeehhh
Confidence 4567777777777889999999986
No 85
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=37.33 E-value=11 Score=25.43 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=17.6
Q ss_pred cccCCCCCccccccccccccCCCC
Q 012811 79 WSCKACTFLNPYNNTSCELCNTRA 102 (456)
Q Consensus 79 W~C~~Ct~~N~~~~~~C~~C~~~~ 102 (456)
-.|-.|.-.|++.+..|--|+...
T Consensus 15 kIC~rC~Arnp~~A~kCRkC~~k~ 38 (50)
T COG1552 15 KICRRCYARNPPRATKCRKCGYKN 38 (50)
T ss_pred HHHHHhcCCCCcchhHHhhccCCC
Confidence 357778888888888888887543
No 86
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=37.05 E-value=20 Score=35.62 Aligned_cols=28 Identities=21% Similarity=0.580 Sum_probs=24.2
Q ss_pred CCCcccCCCCCccccccccccccCCCCC
Q 012811 76 VPTWSCKACTFLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 76 ~~~W~C~~Ct~~N~~~~~~C~~C~~~~~ 103 (456)
.+.|.|.+|.|.-..-...|+.|++.-.
T Consensus 352 ~p~~~c~~cg~~~~~~~~~c~~c~~~~~ 379 (389)
T PRK11788 352 KPRYRCRNCGFTARTLYWHCPSCKAWET 379 (389)
T ss_pred CCCEECCCCCCCCccceeECcCCCCccC
Confidence 4579999999999999999999997543
No 87
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=36.85 E-value=16 Score=34.34 Aligned_cols=47 Identities=26% Similarity=0.608 Sum_probs=26.8
Q ss_pred CceecCC-------CcccccccccccccccCCCCCC-CCCCCCCCCCCCcccCCCC
Q 012811 38 SWACKKC-------TFLNSPSRKSTCQICLTPSSSF-SPPSKSSVSVPTWSCKACT 85 (456)
Q Consensus 38 ~W~C~~C-------t~~N~~s~~~~C~~C~~~~~~~-~~~~~~~~~~~~W~C~~Ct 85 (456)
.|.|.-| |-.|-- +.+.|.-|...-.-- .+++...+..+.|+|+-|.
T Consensus 275 rwqcieck~csicgtsendd-qllfcddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 275 RWQCIECKYCSICGTSENDD-QLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred eeeeeecceeccccCcCCCc-eeEeecccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 6977655 345555 467777776442100 1222223456789999985
No 88
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=36.55 E-value=30 Score=33.65 Aligned_cols=51 Identities=14% Similarity=0.291 Sum_probs=32.6
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccCCCCC
Q 012811 53 KSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 53 ~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~ 103 (456)
...|.+||+..-..........+.-.-.|+.|...=......|.-|+..+.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~~ 237 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSGK 237 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCCc
Confidence 577999997643221111111122346799999988888889999997543
No 89
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=35.47 E-value=17 Score=26.00 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=18.5
Q ss_pred ceecCCCcccccccccccccccCCC
Q 012811 39 WACKKCTFLNSPSRKSTCQICLTPS 63 (456)
Q Consensus 39 W~C~~Ct~~N~~s~~~~C~~C~~~~ 63 (456)
=.|..|.++=+. +...|.+||++.
T Consensus 5 kAC~~Ck~l~~~-d~e~CP~Cgs~~ 28 (64)
T COG2093 5 KACKNCKRLTPE-DTEICPVCGSTD 28 (64)
T ss_pred HHHhhccccCCC-CCccCCCCCCcc
Confidence 369999666666 578999999763
No 90
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=34.61 E-value=26 Score=24.98 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=21.8
Q ss_pred CcccCCCCCcc-----ccccccccccCCCCCCCC
Q 012811 78 TWSCKACTFLN-----PYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 78 ~W~C~~Ct~~N-----~~~~~~C~~C~~~~~~~~ 106 (456)
+-.|+-|.-.+ ......|..|++..-.+.
T Consensus 11 ~VkCp~C~n~q~vFsha~t~V~C~~Cg~~L~~Pt 44 (59)
T PRK00415 11 KVKCPDCGNEQVVFSHASTVVRCLVCGKTLAEPT 44 (59)
T ss_pred EEECCCCCCeEEEEecCCcEEECcccCCCcccCC
Confidence 45688887655 777888999999886554
No 91
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=34.34 E-value=2.2e+02 Score=29.47 Aligned_cols=68 Identities=15% Similarity=0.286 Sum_probs=40.6
Q ss_pred CCCceecCCCcccccccccccccccCCCC----CCCCCC-CCCCCCCCcccCCCCCccccccccccccCCCCCC
Q 012811 36 MSSWACKKCTFLNSPSRKSTCQICLTPSS----SFSPPS-KSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPV 104 (456)
Q Consensus 36 ~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~----~~~~~~-~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~ 104 (456)
.+..+|.+|--.-..-...+|.-|.-.-. .|+.+. ....+.-.|+|+-| -.|..+...=+|=..+++.
T Consensus 542 a~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC-dk~esSD~e~ei~~e~~~s 614 (707)
T KOG0957|consen 542 AMNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC-DKNESSDSEQEIIPEASES 614 (707)
T ss_pred ccceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc-ccccCcchhhhhcccCCcc
Confidence 36789999976544323578988886532 122111 12344668999999 6666665555554444443
No 92
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=33.66 E-value=21 Score=38.54 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=37.4
Q ss_pred CCceecCCCcccccccccccccccCCCCCCC-CCCCC-CCCCCCcccCCCCCccccc
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFS-PPSKS-SVSVPTWSCKACTFLNPYN 91 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~-~~~~~-~~~~~~W~C~~Ct~~N~~~ 91 (456)
..=.|.+|+..-+.--.+.|..|.-.+.... ..+.. ......|.|..|-.+|...
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~~~e 270 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLEITE 270 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhhhhh
Confidence 3458999999998745689999997754332 11111 1234689999999887543
No 93
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=33.57 E-value=28 Score=39.43 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=16.5
Q ss_pred ccCCCC-CccccccccccccCCCCC
Q 012811 80 SCKACT-FLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 80 ~C~~Ct-~~N~~~~~~C~~C~~~~~ 103 (456)
.|..|- |.=.-.+..|..|.|+=.
T Consensus 46 VCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 46 VCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred cccchhhhhhhcCCccCCccCCchh
Confidence 555554 555567778999998655
No 94
>PRK14873 primosome assembly protein PriA; Provisional
Probab=33.40 E-value=26 Score=38.17 Aligned_cols=52 Identities=23% Similarity=0.470 Sum_probs=33.7
Q ss_pred ceecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccCCCCCCC
Q 012811 39 WACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPVS 105 (456)
Q Consensus 39 W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~ 105 (456)
=.|..|.. ...|..|+.+=.... ....-.|+.|.+. . .-+.|..|+...-..
T Consensus 384 l~C~~Cg~------~~~C~~C~~~L~~h~-------~~~~l~Ch~CG~~-~-~p~~Cp~Cgs~~l~~ 435 (665)
T PRK14873 384 LACARCRT------PARCRHCTGPLGLPS-------AGGTPRCRWCGRA-A-PDWRCPRCGSDRLRA 435 (665)
T ss_pred eEhhhCcC------eeECCCCCCceeEec-------CCCeeECCCCcCC-C-cCccCCCCcCCccee
Confidence 47776653 367888886532111 1235689999995 3 477999999875443
No 95
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=33.35 E-value=26 Score=33.29 Aligned_cols=45 Identities=20% Similarity=0.493 Sum_probs=0.0
Q ss_pred cccCCCCCCCCceecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCC
Q 012811 28 SLRTRGSSMSSWACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACT 85 (456)
Q Consensus 28 ~~~~~~~~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct 85 (456)
+.+..+++ ..|+|+.|.-.| .|.-||.-..... .....--||.|+
T Consensus 297 qaqaa~pa-~t~~~~r~~k~n------fc~ncG~~~t~~~------~ng~a~fcp~cg 341 (345)
T COG4260 297 QAQAAAPA-ATWPCARCAKLN------FCLNCGCGTTADF------DNGKAKFCPECG 341 (345)
T ss_pred hhhhcCCc-ccCcchhccccc------cccccCcccccCC------ccchhhhChhhc
No 96
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=33.12 E-value=21 Score=34.94 Aligned_cols=27 Identities=26% Similarity=0.646 Sum_probs=18.0
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccc
Q 012811 53 KSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYN 91 (456)
Q Consensus 53 ~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~ 91 (456)
+..|..||. .....|.|+.|.+.....
T Consensus 309 S~~C~~cg~------------~~~r~~~C~~cg~~~~rD 335 (364)
T COG0675 309 SKTCPCCGH------------LSGRLFKCPRCGFVHDRD 335 (364)
T ss_pred cccccccCC------------ccceeEECCCCCCeehhh
Confidence 678888886 123468888888765443
No 97
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=32.49 E-value=24 Score=24.61 Aligned_cols=8 Identities=25% Similarity=0.908 Sum_probs=4.3
Q ss_pred cccccccC
Q 012811 54 STCQICLT 61 (456)
Q Consensus 54 ~~C~~C~~ 61 (456)
..|.+|+.
T Consensus 6 ~~C~~Cg~ 13 (54)
T PF14446_consen 6 CKCPVCGK 13 (54)
T ss_pred ccChhhCC
Confidence 44555553
No 98
>PRK12496 hypothetical protein; Provisional
Probab=31.40 E-value=29 Score=30.51 Aligned_cols=25 Identities=28% Similarity=0.844 Sum_probs=18.0
Q ss_pred cccCCCC--CccccccccccccCCCCC
Q 012811 79 WSCKACT--FLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 79 W~C~~Ct--~~N~~~~~~C~~C~~~~~ 103 (456)
..|+.|. |........|++||.+..
T Consensus 128 ~~C~gC~~~~~~~~~~~~C~~CG~~~~ 154 (164)
T PRK12496 128 KVCKGCKKKYPEDYPDDVCEICGSPVK 154 (164)
T ss_pred EECCCCCccccCCCCCCcCCCCCChhh
Confidence 4599998 544455578999998743
No 99
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=30.73 E-value=5.7 Score=27.05 Aligned_cols=46 Identities=15% Similarity=0.376 Sum_probs=25.5
Q ss_pred eecCCCcccccccccccccccCCCCCCCCCCC---CCCCCCCcccCCCC
Q 012811 40 ACKKCTFLNSPSRKSTCQICLTPSSSFSPPSK---SSVSVPTWSCKACT 85 (456)
Q Consensus 40 ~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~---~~~~~~~W~C~~Ct 85 (456)
.|.+|.-.+.......|..|+.--...=.... .......|.|+.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 37777776655467889999854321100000 01112389999885
No 100
>PF12898 Stc1: Stc1 domain; InterPro: IPR024630 The domain contains 8 conserved cysteines that may bind to zinc. In S. pombe, proteins containing the domain act as protein linkers, which link the chromatin modifying CLRC complex to RNAi by tethering it to the RITS complex. This domain has a slightly different arrangement of its CxxC pairs from the LIM domain, hence it is not part of that family []. The tandem zinc-finger structure could mediate protein-protein interactions.
Probab=30.40 E-value=45 Score=25.67 Aligned_cols=32 Identities=19% Similarity=0.423 Sum_probs=24.8
Q ss_pred CCCCCcccCCCCCccccccccccccCCCCCCCC
Q 012811 74 VSVPTWSCKACTFLNPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 74 ~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~~ 106 (456)
+....-.|..||=. ...-..|++|+..+|...
T Consensus 33 ~~~~~i~C~~ct~~-q~~El~C~~C~~~k~ld~ 64 (84)
T PF12898_consen 33 PANSGIRCRECTGG-QVVELTCSPCGKTKPLDE 64 (84)
T ss_pred cCCCCCCCccCCCC-CcCcCEeccCCCCcCHHH
Confidence 34456789999976 556668999999998764
No 101
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.08 E-value=32 Score=36.15 Aligned_cols=25 Identities=20% Similarity=0.704 Sum_probs=17.6
Q ss_pred CCcccCCCCCccccccccccccCCCC
Q 012811 77 PTWSCKACTFLNPYNNTSCELCNTRA 102 (456)
Q Consensus 77 ~~W~C~~Ct~~N~~~~~~C~~C~~~~ 102 (456)
..-.|+.|.+.-... ..|..|+...
T Consensus 239 ~~l~Ch~Cg~~~~~~-~~Cp~C~s~~ 263 (505)
T TIGR00595 239 GKLRCHYCGYQEPIP-KTCPQCGSED 263 (505)
T ss_pred CeEEcCCCcCcCCCC-CCCCCCCCCe
Confidence 356899998765443 5799998754
No 102
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=29.70 E-value=23 Score=34.70 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=44.5
Q ss_pred CCceec--CCCcccccccccccccccCCCCCC--CCC-----------CCCCCCCCCcccCCCCCcccccccccc
Q 012811 37 SSWACK--KCTFLNSPSRKSTCQICLTPSSSF--SPP-----------SKSSVSVPTWSCKACTFLNPYNNTSCE 96 (456)
Q Consensus 37 ~~W~C~--~Ct~~N~~s~~~~C~~C~~~~~~~--~~~-----------~~~~~~~~~W~C~~Ct~~N~~~~~~C~ 96 (456)
-.|.|+ +|.=+|.. ...+|-+|...+... -.. .........|.|..|+..|+.....|-
T Consensus 70 ~v~g~~d~~~~~~~~~-~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 70 FVWGCPDSVCENDNAD-FFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred eeeccCccchHHHHHH-HHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 579998 88889999 599999999887642 110 011123457999999999999998887
No 103
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=28.79 E-value=36 Score=38.46 Aligned_cols=24 Identities=38% Similarity=0.796 Sum_probs=16.2
Q ss_pred ccCCCC-CccccccccccccCCCCC
Q 012811 80 SCKACT-FLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 80 ~C~~Ct-~~N~~~~~~C~~C~~~~~ 103 (456)
.|..|- |.=...+..|..|+++-.
T Consensus 44 vCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 44 VCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cccchhhhhhhcCCccCCccCCchh
Confidence 555554 445556778999998755
No 104
>PRK12496 hypothetical protein; Provisional
Probab=28.46 E-value=34 Score=30.04 Aligned_cols=25 Identities=32% Similarity=0.965 Sum_probs=17.8
Q ss_pred CCc--eecCCC--cccccccccccccccCC
Q 012811 37 SSW--ACKKCT--FLNSPSRKSTCQICLTP 62 (456)
Q Consensus 37 ~~W--~C~~Ct--~~N~~s~~~~C~~C~~~ 62 (456)
..| .|+.|- |.... ....|.+||++
T Consensus 124 ~~w~~~C~gC~~~~~~~~-~~~~C~~CG~~ 152 (164)
T PRK12496 124 IKWRKVCKGCKKKYPEDY-PDDVCEICGSP 152 (164)
T ss_pred eeeeEECCCCCccccCCC-CCCcCCCCCCh
Confidence 357 799995 54333 35789999987
No 105
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.93 E-value=56 Score=31.80 Aligned_cols=53 Identities=17% Similarity=0.416 Sum_probs=33.3
Q ss_pred ccccccccCCCCCCCCCCCC-CCCCCCcccCCCCCccccccccccccCCCCCCC
Q 012811 53 KSTCQICLTPSSSFSPPSKS-SVSVPTWSCKACTFLNPYNNTSCELCNTRAPVS 105 (456)
Q Consensus 53 ~~~C~~C~~~~~~~~~~~~~-~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~ 105 (456)
...|.+||+..-........ ..+.-.-.|+.|...=......|.-|+..+...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~~l~ 237 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESKHLA 237 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCCcee
Confidence 46799999764222111100 112234679999998888888999999865433
No 106
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=27.43 E-value=39 Score=37.04 Aligned_cols=49 Identities=20% Similarity=0.626 Sum_probs=34.3
Q ss_pred ceecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccCCC
Q 012811 39 WACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTR 101 (456)
Q Consensus 39 W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~ 101 (456)
=.|..|-++ ..|..|..+-.-. .....-.|+.|.+. .+.-..|.-||..
T Consensus 436 l~C~~Cg~v------~~Cp~Cd~~lt~H-------~~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 436 LLCRDCGYI------AECPNCDSPLTLH-------KATGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred eecccCCCc------ccCCCCCcceEEe-------cCCCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 367777654 5688887652211 11246789999999 7788889999977
No 107
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.60 E-value=48 Score=36.13 Aligned_cols=34 Identities=26% Similarity=0.641 Sum_probs=22.2
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCcccCCCC----CccccccccccccCCCC
Q 012811 53 KSTCQICLTPSSSFSPPSKSSVSVPTWSCKACT----FLNPYNNTSCELCNTRA 102 (456)
Q Consensus 53 ~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct----~~N~~~~~~C~~C~~~~ 102 (456)
...|..||. .-.|++|. |....+...|.-||...
T Consensus 383 ~l~C~~Cg~----------------~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~ 420 (665)
T PRK14873 383 SLACARCRT----------------PARCRHCTGPLGLPSAGGTPRCRWCGRAA 420 (665)
T ss_pred eeEhhhCcC----------------eeECCCCCCceeEecCCCeeECCCCcCCC
Confidence 467888884 34788886 33334456688888754
No 108
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=25.27 E-value=45 Score=37.95 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=31.3
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccCC
Q 012811 48 NSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNT 100 (456)
Q Consensus 48 N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~~ 100 (456)
|.- ....|..|+..-...=-. -....++.|.|..|.+-=... ..|.+|-.
T Consensus 232 n~n-~ivfCD~Cnl~VHq~Cyg-i~~ipeg~WlCr~Cl~s~~~~-v~c~~cp~ 281 (1051)
T KOG0955|consen 232 NSN-VIVFCDGCNLAVHQECYG-IPFIPEGQWLCRRCLQSPQRP-VRCLLCPS 281 (1051)
T ss_pred CCc-eEEEcCCCcchhhhhccC-CCCCCCCcEeehhhccCcCcc-cceEeccC
Confidence 776 479999999763211000 001235689999999853333 78999964
No 109
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.14 E-value=55 Score=35.91 Aligned_cols=38 Identities=18% Similarity=0.522 Sum_probs=29.1
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCcccCCCC----CccccccccccccCCCCCCCC
Q 012811 53 KSTCQICLTPSSSFSPPSKSSVSVPTWSCKACT----FLNPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 53 ~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct----~~N~~~~~~C~~C~~~~~~~~ 106 (456)
...|..||. .-.|+.|. |....+...|--|+...+.+.
T Consensus 435 ~l~C~~Cg~----------------v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~ 476 (730)
T COG1198 435 LLLCRDCGY----------------IAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQ 476 (730)
T ss_pred eeecccCCC----------------cccCCCCCcceEEecCCCeeEeCCCCCCCCCCC
Confidence 588999994 24799996 566667788999999866554
No 110
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=24.32 E-value=30 Score=32.94 Aligned_cols=22 Identities=27% Similarity=0.863 Sum_probs=20.2
Q ss_pred cccCCCCCccccccccccccCC
Q 012811 79 WSCKACTFLNPYNNTSCELCNT 100 (456)
Q Consensus 79 W~C~~Ct~~N~~~~~~C~~C~~ 100 (456)
-.|++|-+.-+++++.|++|..
T Consensus 149 ~kCSTCki~KPARSKHCsiCNr 170 (341)
T KOG1312|consen 149 VKCSTCKIRKPARSKHCSICNR 170 (341)
T ss_pred CccccccCCCccccccchHHHH
Confidence 6899999999999999999973
No 112
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=24.25 E-value=92 Score=33.70 Aligned_cols=65 Identities=18% Similarity=0.425 Sum_probs=42.8
Q ss_pred CCceecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccc----cccccccccCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNP----YNNTSCELCNTRA 102 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~----~~~~~C~~C~~~~ 102 (456)
.+=.|..|.-.=+++ ...|..|.+.=|.=.++-++-....-|-|++|.-.=. +.-..|..|..+-
T Consensus 1116 ~~vdc~~cg~~i~~~-~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1116 AKVDCSVCGAKIDPY-DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHSME 1184 (1189)
T ss_pred cceeeeecCCcCCcc-CCCChhhcCcCceeeccCCccccceEEEccccccccccccccccccCccccChh
Confidence 356788888877774 8889999876553333222234456899999875333 3445599998653
No 113
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=24.19 E-value=99 Score=28.92 Aligned_cols=38 Identities=11% Similarity=0.446 Sum_probs=24.0
Q ss_pred eEEEEEeccCCCCCChhhHHHHHHHHHh---hCCCcEEEEeccC
Q 012811 186 LKILSYNVWFREDLEMHPRMKTIGDLIQ---LHSPDIICFQEIT 226 (456)
Q Consensus 186 lrV~T~Nv~~~~~~~~~~r~~~i~~~I~---~~~pDII~LQEv~ 226 (456)
+-++.+|+.... ...+++.+.++|+ ...+|||+|.|..
T Consensus 2 ia~~Q~~~~~~~---~~~n~~~i~~~i~~a~~~gadliv~PE~~ 42 (261)
T cd07585 2 IALVQFEARVGD---KARNLAVIARWTRKAAAQGAELVCFPEMC 42 (261)
T ss_pred EEEEEeecCCCC---HHHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence 456677764332 3344555555444 5679999999975
No 114
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=23.94 E-value=1.5e+02 Score=27.45 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=25.5
Q ss_pred EEEEEeccCCCCCCCC-ccccccHHHHHHHHHHHHHHh-hcCCCEEEEccCCC
Q 012811 296 LVVATSHLESPCPGPP-TWDQMFSKERVEQAKEAINLL-KKNPNVIFCGDMNW 346 (456)
Q Consensus 296 l~v~n~Hl~~~~~~~~-~~~~~~~~~R~~Q~~~l~~~l-~~~~pvIl~GDFN~ 346 (456)
|.+.-.|+.+....+. .|.+. ..+|.+.+....+.+ .+-.-+|++|||-.
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~-~~~~~~~i~~~~~~~~~~~D~viiaGDl~~ 53 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPE-WKNHTEKIKENWDNVVAPEDIVLIPGDISW 53 (232)
T ss_pred eEEEeeccCCCCCCCCcccCcc-HHHHHHHHHHHHHhcCCCCCEEEEcCCCcc
Confidence 4455678775321111 12121 234555555544444 33556999999963
No 115
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=23.91 E-value=44 Score=34.85 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=7.4
Q ss_pred cccccccCCCCC
Q 012811 92 NTSCELCNTRAP 103 (456)
Q Consensus 92 ~~~C~~C~~~~~ 103 (456)
.+.|.+|+.++.
T Consensus 458 ~~~cp~c~~~k~ 469 (479)
T PRK05452 458 NFLCPECSLGKD 469 (479)
T ss_pred CCcCcCCCCcHH
Confidence 556777766553
No 116
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=23.81 E-value=43 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.665 Sum_probs=18.0
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCcccCCCCCc
Q 012811 53 KSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFL 87 (456)
Q Consensus 53 ~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~ 87 (456)
...|..|+.+.-.- ...+-|.|..|.+.
T Consensus 35 ~~~Cp~C~~~~VkR-------~a~GIW~C~kCg~~ 62 (89)
T COG1997 35 KHVCPFCGRTTVKR-------IATGIWKCRKCGAK 62 (89)
T ss_pred CCcCCCCCCcceee-------eccCeEEcCCCCCe
Confidence 35688888663221 12467999999764
No 117
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=23.81 E-value=40 Score=22.99 Aligned_cols=11 Identities=27% Similarity=1.168 Sum_probs=7.3
Q ss_pred CCcccCCCCCc
Q 012811 77 PTWSCKACTFL 87 (456)
Q Consensus 77 ~~W~C~~Ct~~ 87 (456)
..|.|-.|.|.
T Consensus 36 dR~~CGkCgyT 46 (51)
T COG1998 36 DRWACGKCGYT 46 (51)
T ss_pred ceeEeccccce
Confidence 36777777664
No 118
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.78 E-value=37 Score=27.95 Aligned_cols=44 Identities=25% Similarity=0.633 Sum_probs=29.6
Q ss_pred eecCCC----cccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCcc-ccccccccccCCCC
Q 012811 40 ACKKCT----FLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLN-PYNNTSCELCNTRA 102 (456)
Q Consensus 40 ~C~~Ct----~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N-~~~~~~C~~C~~~~ 102 (456)
.|..|. |+... ...|..|. ...|..|...+ ....+.|.+|...+
T Consensus 56 ~C~~C~~~fg~l~~~--~~~C~~C~-----------------~~VC~~C~~~~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 56 HCARCGKPFGFLFNR--GRVCVDCK-----------------HRVCKKCGVYSKKEPIWLCKVCQKQR 104 (118)
T ss_dssp B-TTTS-BCSCTSTT--CEEETTTT-----------------EEEETTSEEETSSSCCEEEHHHHHHH
T ss_pred chhhhCCcccccCCC--CCcCCcCC-----------------ccccCccCCcCCCCCCEEChhhHHHH
Confidence 677772 33222 36788887 46899999764 56788899997644
No 119
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=21.31 E-value=96 Score=28.62 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=23.1
Q ss_pred EEEEEeccCCCCCChhhHHHHHHHHHh---hCCCcEEEEeccC
Q 012811 187 KILSYNVWFREDLEMHPRMKTIGDLIQ---LHSPDIICFQEIT 226 (456)
Q Consensus 187 rV~T~Nv~~~~~~~~~~r~~~i~~~I~---~~~pDII~LQEv~ 226 (456)
-++..|+.... ..+.++.+.++|. +.++|||+|.|..
T Consensus 2 a~~Q~~~~~~~---~~~n~~~~~~~i~~a~~~g~dlvvfPE~~ 41 (253)
T cd07197 2 AAVQLAPKIGD---VEANLAKALRLIKEAAEQGADLIVLPELF 41 (253)
T ss_pred EEEEccCCCCC---HHHHHHHHHHHHHHHHHCCCCEEEcCCcc
Confidence 45666765432 3344455544444 5679999999964
No 120
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=21.13 E-value=36 Score=34.79 Aligned_cols=57 Identities=25% Similarity=0.498 Sum_probs=32.6
Q ss_pred eecCCCc---ccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccC
Q 012811 40 ACKKCTF---LNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCN 99 (456)
Q Consensus 40 ~C~~Ct~---~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~ 99 (456)
.|.+||= .|.. .-..|..|.+.-...==+- .-...+.|-|..|.+- +.....|.+|-
T Consensus 195 ~C~~c~~t~~eN~n-aiVfCdgC~i~VHq~CYGI-~f~peG~WlCrkCi~~-~~~i~~C~fCp 254 (669)
T COG5141 195 ICTKCTSTHNENSN-AIVFCDGCEICVHQSCYGI-QFLPEGFWLCRKCIYG-EYQIRCCSFCP 254 (669)
T ss_pred hhHhccccccCCcc-eEEEecCcchhhhhhcccc-eecCcchhhhhhhccc-ccceeEEEecc
Confidence 5666642 2333 2478988887643211000 0022468999999885 33456699995
No 121
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=21.13 E-value=53 Score=21.80 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=13.5
Q ss_pred cccCCCCCcccccccccc
Q 012811 79 WSCKACTFLNPYNNTSCE 96 (456)
Q Consensus 79 W~C~~Ct~~N~~~~~~C~ 96 (456)
-.|+.|...|-.....|.
T Consensus 12 rkCp~CGt~NG~R~~~CK 29 (44)
T PF14952_consen 12 RKCPKCGTYNGTRGLSCK 29 (44)
T ss_pred ccCCcCcCccCccccccc
Confidence 468888888877776664
No 122
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=20.82 E-value=66 Score=32.20 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=0.0
Q ss_pred ccCcccCCCCCCCCc-eecCCCcccccccccccccccCC
Q 012811 25 FFTSLRTRGSSMSSW-ACKKCTFLNSPSRKSTCQICLTP 62 (456)
Q Consensus 25 ~~~~~~~~~~~~~~W-~C~~Ct~~N~~s~~~~C~~C~~~ 62 (456)
...+.+..-..++.| .|..|++.+.......|.-|+++
T Consensus 206 ~~~pq~~~~~~~~~~~~C~~C~~~~~~~~~~~CpRC~~~ 244 (418)
T COG2995 206 RFYPQTLATGAREGLRSCLCCHYILPHDAEPRCPRCGSK 244 (418)
T ss_pred hhccccCCCCCcccceecccccccCCHhhCCCCCCCCCh
No 123
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=20.13 E-value=1.5e+02 Score=27.69 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=28.1
Q ss_pred eEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccC
Q 012811 186 LKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEIT 226 (456)
Q Consensus 186 lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~ 226 (456)
+.++.+|.... +...+++.+.++|.+..+|+|+|.|..
T Consensus 2 ia~~Q~~~~~~---d~~~N~~~~~~~i~~a~adlvvfPE~~ 39 (259)
T cd07577 2 VGYVQFNPKFG---EVEKNLKKVESLIKGVEADLIVLPELF 39 (259)
T ss_pred EEEEEccCccC---CHHHHHHHHHHHHHHhCCCEEEccccc
Confidence 45666775432 345778888888887779999999974
Done!