Query 012811
Match_columns 456
No_of_seqs 447 out of 2059
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 16:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gew_A 5'-tyrosyl-DNA phosphod 100.0 2.7E-36 9.3E-41 300.2 25.5 240 179-452 113-361 (362)
2 4fva_A 5'-tyrosyl-DNA phosphod 100.0 2.5E-35 8.4E-40 277.8 25.3 236 183-452 11-255 (256)
3 4gz1_A Tyrosyl-DNA phosphodies 100.0 4.9E-34 1.7E-38 268.7 21.1 239 183-454 7-255 (256)
4 4f1h_A Tyrosyl-DNA phosphodies 100.0 5.8E-34 2E-38 265.6 20.6 237 184-452 2-249 (250)
5 3l1w_A Uncharacterized protein 100.0 2.4E-32 8.3E-37 258.7 20.4 231 186-454 1-252 (257)
6 3teb_A Endonuclease/exonucleas 100.0 1.4E-32 4.8E-37 261.2 14.8 237 184-453 2-266 (266)
7 3g6s_A Putative endonuclease/e 100.0 1.8E-31 6.1E-36 254.3 18.6 232 184-453 2-260 (267)
8 3mpr_A Putative endonuclease/e 100.0 1.4E-30 4.7E-35 252.6 17.8 254 183-454 4-290 (298)
9 1zwx_A SMCL, sphingomyelinase- 100.0 4.7E-29 1.6E-33 241.6 15.8 212 183-402 8-255 (301)
10 3i41_A Beta-hemolysin; beta to 100.0 1.4E-28 4.7E-33 240.7 15.0 221 181-408 25-279 (317)
11 1ako_A Exonuclease III; AP-end 100.0 5.5E-29 1.9E-33 236.5 10.7 227 186-452 1-267 (268)
12 2jc4_A Exodeoxyribonuclease II 100.0 3.3E-28 1.1E-32 229.5 13.3 223 186-453 1-256 (256)
13 2ddr_A Sphingomyelin phosphodi 100.0 1.8E-27 6E-32 231.0 18.4 215 183-402 7-260 (306)
14 1hd7_A DNA-(apurinic or apyrim 99.9 7.3E-28 2.5E-32 235.6 13.9 225 182-453 58-318 (318)
15 2j63_A AP-endonuclease; base e 99.9 4.3E-26 1.5E-30 232.4 23.1 235 183-453 147-466 (467)
16 2jc5_A Exodeoxyribonuclease; h 99.9 6.9E-27 2.4E-31 220.9 14.9 222 186-455 2-258 (259)
17 2o3h_A DNA-(apurinic or apyrim 99.9 7.5E-27 2.6E-31 224.4 14.6 225 182-453 25-285 (285)
18 1vyb_A ORF2 contains A reverse 99.9 5.4E-26 1.9E-30 211.8 19.2 211 184-452 6-238 (238)
19 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 7.1E-27 2.4E-31 220.8 12.7 222 186-453 2-257 (257)
20 3ngq_A CCR4-NOT transcription 99.9 5.3E-27 1.8E-31 234.0 12.0 246 183-454 29-382 (398)
21 3g91_A MTH0212, exodeoxyribonu 99.9 4.3E-25 1.5E-29 210.0 16.9 223 184-454 2-258 (265)
22 1wdu_A TRAS1 ORF2P; four-layer 99.9 2.5E-23 8.5E-28 195.5 18.4 215 184-453 18-243 (245)
23 4b8c_D Glucose-repressible alc 99.9 2.3E-25 7.8E-30 241.0 4.3 243 183-455 392-719 (727)
24 2ei9_A Non-LTR retrotransposon 99.9 6.9E-22 2.4E-26 185.2 14.8 197 185-454 7-220 (240)
25 2a40_B Deoxyribonuclease-1; WA 99.9 2.3E-21 7.7E-26 183.9 14.3 151 186-349 1-174 (260)
26 2f1n_A CDT B, cytolethal diste 99.9 9.9E-22 3.4E-26 180.2 11.1 188 182-400 12-227 (262)
27 1sr4_B CDT B, cytolethal diste 99.9 3.8E-21 1.3E-25 178.6 14.0 151 184-350 3-184 (261)
28 2imq_X Salivary nitrophorin; f 99.8 1.4E-19 4.9E-24 173.4 8.6 154 184-350 7-178 (282)
29 1i9z_A Synaptojanin, phosphati 99.7 7.9E-17 2.7E-21 157.7 18.8 226 184-455 25-317 (347)
30 2xsw_A 72 kDa inositol polypho 99.6 5.1E-14 1.8E-18 138.0 18.7 152 184-350 26-211 (357)
31 3mtc_A Type II inositol-1,4,5- 99.5 7.4E-12 2.5E-16 119.5 21.3 147 185-349 9-196 (313)
32 3gj7_B Nuclear pore complex pr 99.4 1.9E-14 6.5E-19 112.9 2.1 70 34-104 5-98 (98)
33 4a9c_A Phosphatidylinositol-3, 99.3 9.8E-11 3.3E-15 112.1 18.5 146 185-348 9-196 (316)
34 3gj8_B Nuclear pore complex pr 99.3 1.3E-12 4.3E-17 102.1 2.1 67 37-104 7-91 (92)
35 1w7p_D VPS36P, YLR417W; ESCRT- 99.0 3.3E-11 1.1E-15 122.8 0.0 70 36-105 115-207 (566)
36 3a9j_C Mitogen-activated prote 98.8 1.9E-09 6.6E-14 67.4 2.5 28 76-103 6-33 (34)
37 2crc_A Ubiquitin conjugating e 98.8 9.8E-09 3.3E-13 69.9 5.9 33 74-106 6-38 (52)
38 1nj3_A NPL4; NZF domain, rubre 98.8 2.9E-09 9.9E-14 65.1 2.8 27 76-102 4-30 (31)
39 2d9g_A YY1-associated factor 2 98.7 6.3E-09 2.2E-13 71.5 3.7 32 75-106 8-39 (53)
40 3gj3_B Nuclear pore complex pr 98.7 4.7E-09 1.6E-13 64.2 2.1 29 75-103 4-32 (33)
41 3gj3_B Nuclear pore complex pr 98.5 2.5E-08 8.7E-13 60.9 2.1 27 37-64 6-32 (33)
42 3b08_B Ranbp-type and C3HC4-ty 98.5 7.4E-08 2.5E-12 68.1 3.7 31 76-106 6-36 (64)
43 1nj3_A NPL4; NZF domain, rubre 98.5 7E-08 2.4E-12 58.8 2.7 26 37-63 5-30 (31)
44 3a9j_C Mitogen-activated prote 98.4 7.9E-08 2.7E-12 60.0 2.4 27 37-64 7-33 (34)
45 2d9g_A YY1-associated factor 2 98.4 1.7E-07 6E-12 64.3 3.7 30 37-67 10-39 (53)
46 2crc_A Ubiquitin conjugating e 98.3 3.4E-07 1.2E-11 62.3 3.5 35 32-67 4-38 (52)
47 3gj5_B Nuclear pore complex pr 98.2 3.6E-07 1.2E-11 56.1 2.0 29 76-104 5-33 (34)
48 2ebq_A Nuclear pore complex pr 98.1 2E-06 6.8E-11 56.8 3.6 34 73-106 6-39 (47)
49 3gj5_B Nuclear pore complex pr 98.1 1.3E-06 4.6E-11 53.5 2.0 28 37-65 6-33 (34)
50 2ebq_A Nuclear pore complex pr 98.0 4.7E-06 1.6E-10 55.1 3.5 33 34-67 7-39 (47)
51 3b08_B Ranbp-type and C3HC4-ty 98.0 4.7E-06 1.6E-10 58.9 3.4 30 37-67 7-36 (64)
52 2ebr_A Nuclear pore complex pr 98.0 6.5E-06 2.2E-10 54.6 3.9 32 75-106 8-39 (47)
53 2ebr_A Nuclear pore complex pr 97.9 9.6E-06 3.3E-10 53.8 4.1 33 34-67 7-39 (47)
54 2ebv_A Nuclear pore complex pr 97.7 5.7E-05 1.9E-09 52.1 4.7 30 34-64 27-56 (57)
55 2lk0_A RNA-binding protein 5; 97.6 1.8E-05 6.1E-10 48.2 1.9 30 75-104 2-31 (32)
56 2k1p_A Zinc finger RAN-binding 97.6 4.6E-05 1.6E-09 46.7 3.4 29 76-104 4-32 (33)
57 2ebv_A Nuclear pore complex pr 97.6 4.5E-05 1.5E-09 52.6 3.3 31 74-104 27-57 (57)
58 2k1p_A Zinc finger RAN-binding 97.5 7.8E-05 2.7E-09 45.7 3.1 29 36-65 4-32 (33)
59 3gj7_B Nuclear pore complex pr 97.4 5.1E-05 1.7E-09 59.2 2.1 29 35-64 69-97 (98)
60 2lk0_A RNA-binding protein 5; 97.3 8.1E-05 2.8E-09 45.3 1.9 28 37-65 4-31 (32)
61 1n0z_A ZNF265; zinc finger, RN 97.2 0.00043 1.5E-08 45.6 4.3 32 74-105 10-43 (45)
62 3gj8_B Nuclear pore complex pr 96.9 0.00032 1.1E-08 54.3 2.1 30 35-65 62-91 (92)
63 1n0z_A ZNF265; zinc finger, RN 96.9 0.0011 3.7E-08 43.7 3.9 30 36-66 12-43 (45)
64 2j9u_B VPS36, vacuolar protein 95.9 0.0023 7.9E-08 46.2 1.4 16 37-53 16-31 (76)
65 1w7p_D VPS36P, YLR417W; ESCRT- 94.7 0.0055 1.9E-07 62.6 0.0 27 38-65 180-206 (566)
66 2cr8_A MDM4 protein; ZF-ranbp 93.3 0.077 2.6E-06 35.0 3.3 32 74-105 7-38 (53)
67 2j9u_B VPS36, vacuolar protein 92.4 0.042 1.4E-06 39.6 1.3 30 76-105 15-53 (76)
68 2c6a_A Ubiquitin-protein ligas 88.8 0.19 6.6E-06 32.4 1.8 28 77-104 12-39 (46)
69 2cr8_A MDM4 protein; ZF-ranbp 83.0 1.1 3.7E-05 29.5 3.1 27 37-64 10-36 (53)
70 1weo_A Cellulose synthase, cat 82.4 1 3.5E-05 33.6 3.2 17 88-104 54-70 (93)
71 4rxn_A Rubredoxin; electron tr 76.1 1.2 4.2E-05 30.2 1.8 14 37-50 2-15 (54)
72 1e8j_A Rubredoxin; iron-sulfur 75.4 1.9 6.5E-05 29.0 2.6 14 37-50 2-15 (52)
73 6rxn_A Rubredoxin; electron tr 75.1 1.3 4.4E-05 28.9 1.6 14 37-50 3-16 (46)
74 1wil_A KIAA1045 protein; ring 73.1 13 0.00046 27.4 6.7 61 29-90 6-79 (89)
75 1e8j_A Rubredoxin; iron-sulfur 72.4 6.5 0.00022 26.3 4.6 9 54-62 4-12 (52)
76 2c6a_A Ubiquitin-protein ligas 72.2 1.8 6.1E-05 28.0 1.7 27 37-64 12-38 (46)
77 1mm2_A MI2-beta; PHD, zinc fin 71.6 7.4 0.00025 26.9 5.1 50 35-87 6-56 (61)
78 3j21_g 50S ribosomal protein L 70.5 1.9 6.4E-05 28.8 1.6 25 77-101 13-37 (51)
79 2yql_A PHD finger protein 21A; 69.7 3.6 0.00012 27.9 3.0 52 31-85 2-54 (56)
80 1yk4_A Rubredoxin, RD; electro 69.1 2 6.8E-05 28.8 1.5 13 38-50 2-14 (52)
81 1s24_A Rubredoxin 2; electron 68.6 3.7 0.00013 30.7 3.0 19 32-50 29-47 (87)
82 2kn9_A Rubredoxin; metalloprot 66.3 6.9 0.00023 28.8 4.0 14 37-50 26-39 (81)
83 1yuz_A Nigerythrin; rubrythrin 66.2 2.1 7.3E-05 37.7 1.6 26 77-102 170-196 (202)
84 3pwf_A Rubrerythrin; non heme 64.5 2.4 8.3E-05 36.2 1.5 28 76-103 136-164 (170)
85 1dx8_A Rubredoxin; electron tr 64.3 6.7 0.00023 28.0 3.6 14 37-50 6-19 (70)
86 1lko_A Rubrerythrin all-iron(I 61.0 2.7 9.3E-05 36.7 1.3 26 78-103 155-182 (191)
87 1lko_A Rubrerythrin all-iron(I 59.4 3.4 0.00012 36.1 1.6 28 37-64 154-182 (191)
88 2yt5_A Metal-response element- 59.4 3.3 0.00011 29.1 1.3 55 35-90 3-64 (66)
89 3pwf_A Rubrerythrin; non heme 59.1 3.4 0.00012 35.3 1.5 28 37-64 137-164 (170)
90 1fp0_A KAP-1 corepressor; PHD 59.0 24 0.00081 26.4 6.0 50 37-89 24-74 (88)
91 2e6r_A Jumonji/ARID domain-con 58.9 9.1 0.00031 28.9 3.8 50 37-86 15-65 (92)
92 1dx8_A Rubredoxin; electron tr 56.4 4.6 0.00016 28.9 1.6 8 54-61 8-15 (70)
93 1s24_A Rubredoxin 2; electron 56.1 4.4 0.00015 30.3 1.5 13 90-102 66-78 (87)
94 2v3b_B Rubredoxin 2, rubredoxi 55.3 4.7 0.00016 27.3 1.4 14 37-50 2-15 (55)
95 2kn9_A Rubredoxin; metalloprot 54.0 4.5 0.00015 29.8 1.2 14 90-103 58-71 (81)
96 2ysm_A Myeloid/lymphoid or mix 53.9 16 0.00053 28.5 4.5 56 38-101 7-63 (111)
97 3o36_A Transcription intermedi 53.7 31 0.0011 29.4 6.9 57 37-96 3-61 (184)
98 2e6s_A E3 ubiquitin-protein li 50.4 34 0.0012 24.8 5.5 8 78-85 68-75 (77)
99 2lri_C Autoimmune regulator; Z 49.3 13 0.00044 26.2 3.0 44 37-86 11-58 (66)
100 1yuz_A Nigerythrin; rubrythrin 49.0 7.8 0.00027 34.0 2.2 27 36-63 169-196 (202)
101 3v43_A Histone acetyltransfera 46.6 13 0.00044 29.1 3.0 48 37-85 54-110 (112)
102 1xwh_A Autoimmune regulator; P 46.2 16 0.00054 25.6 3.1 49 37-88 7-56 (66)
103 2ayj_A 50S ribosomal protein L 45.5 8.9 0.0003 25.9 1.5 25 76-100 17-41 (56)
104 2k16_A Transcription initiatio 45.4 19 0.00065 25.8 3.5 45 37-86 17-67 (75)
105 3u5n_A E3 ubiquitin-protein li 45.3 21 0.00073 31.2 4.5 59 37-98 6-66 (207)
106 3asl_A E3 ubiquitin-protein li 45.0 12 0.00041 26.7 2.2 46 37-85 12-67 (70)
107 2ayj_A 50S ribosomal protein L 41.4 13 0.00044 25.1 1.8 25 37-62 18-42 (56)
108 3j21_g 50S ribosomal protein L 40.4 12 0.00042 24.8 1.5 25 37-62 13-37 (51)
109 1f62_A Transcription factor WS 39.4 13 0.00045 24.3 1.6 43 41-86 3-49 (51)
110 2kwj_A Zinc finger protein DPF 38.7 11 0.00038 29.6 1.4 48 37-85 51-106 (114)
111 3shb_A E3 ubiquitin-protein li 36.9 26 0.00091 25.4 3.1 48 37-85 20-75 (77)
112 2l5u_A Chromodomain-helicase-D 36.9 37 0.0013 23.2 3.7 45 37-87 10-58 (61)
113 2lv9_A Histone-lysine N-methyl 36.1 56 0.0019 24.7 5.0 45 40-85 30-74 (98)
114 4gne_A Histone-lysine N-methyl 35.6 24 0.00083 27.4 2.9 60 36-99 13-76 (107)
115 3ask_A E3 ubiquitin-protein li 32.5 31 0.0011 30.6 3.4 8 78-85 216-223 (226)
116 2apo_B Ribosome biogenesis pro 31.4 36 0.0012 23.4 2.8 31 80-112 8-38 (60)
117 2ko5_A Ring finger protein Z; 31.4 7.4 0.00025 29.3 -0.7 49 37-106 27-75 (99)
118 4hc9_A Trans-acting T-cell-spe 30.8 36 0.0012 26.8 3.1 62 39-100 6-88 (115)
119 2puy_A PHD finger protein 21A; 29.5 19 0.00065 24.5 1.2 45 37-87 4-52 (60)
120 2l43_A N-teminal domain from h 28.0 27 0.00092 26.0 1.9 52 37-90 24-78 (88)
121 2yrc_A Protein transport prote 25.8 13 0.00045 25.5 -0.2 12 78-89 33-44 (59)
122 2ro1_A Transcription intermedi 25.8 61 0.0021 27.8 4.1 44 41-87 5-49 (189)
123 1vq8_Z 50S ribosomal protein L 24.9 11 0.00038 27.9 -0.7 35 53-94 27-61 (83)
124 1wev_A Riken cDNA 1110020M19; 21.9 37 0.0013 25.2 1.7 50 39-89 17-74 (88)
125 2ku3_A Bromodomain-containing 21.4 53 0.0018 23.3 2.3 44 37-86 15-65 (71)
No 1
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=100.00 E-value=2.7e-36 Score=300.19 Aligned_cols=240 Identities=23% Similarity=0.318 Sum_probs=187.5
Q ss_pred CCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhHHHHHHhCCCccceEEecCCCCCCCCCeEE
Q 012811 179 SGAVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFC 258 (456)
Q Consensus 179 ~~~~~~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ 258 (456)
...+...||||||||+++....+..|+.+|+++|+.++|||||||||.......|.+.+ .+|.+.... ...++|+
T Consensus 113 ~~~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~~~l~~~~--~~y~~~~~~---~~~~~G~ 187 (362)
T 4gew_A 113 EDLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQ--SLYKIYYSN---KGCQYYT 187 (362)
T ss_dssp CTTTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHGGG--GTEEEEESS---TTSSSEE
T ss_pred CCCCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHhHHHHHhc--CCceEEeCC---CCCCceE
Confidence 34445689999999999877778899999999999999999999999877777777653 345544432 2456899
Q ss_pred EEEEeeecc--eeeEeeCCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc--
Q 012811 259 MQLSKLQAK--SFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK-- 334 (456)
Q Consensus 259 ailSr~pi~--~~~~~~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~-- 334 (456)
+||+|.|+. ....+.++....+|.++.+.+.++ |..|.|+|+||++... ....|..|+..+...+..
T Consensus 188 aIlsk~~i~~~~~~~~~~~~~~~~r~~l~~~i~~~-g~~l~v~ntHL~s~~~--------~~~~R~~Q~~~l~~~~~~~~ 258 (362)
T 4gew_A 188 AILVSKMFDVEKHDVIHFQNSGMYRTLQILEGSIG-GLKVFLLNTHLESTRE--------HRPQRCAQFGFCMDKVREII 258 (362)
T ss_dssp EEEEETTEEEEEEEEEECTTCSSCCEEEEEEEEET-TEEEEEEEEECCCSGG--------GHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCccccccccCCCCCcccceEEEEEEEEC-CEEEEEEEecCCcccc--------chhHHHHHHHHHHHHhHhhh
Confidence 999996654 444556666667788999999998 7899999999998732 356788888887776542
Q ss_pred ----CCCEEEEccCCCCCCCCCCcCCCCCccccccccc-CCCCCccccCCCCccccCCCccCCCccEEEEecCCCccceE
Q 012811 335 ----NPNVIFCGDMNWDDKLDGKFPLPDGWVDAWTELR-PGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRI 409 (456)
Q Consensus 335 ----~~pvIl~GDFN~~~~~~~~~~l~~gl~D~~~~~~-~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~ 409 (456)
+.|+|||||||..+.+.. ....+|.|+|+.++ +.+.+|||+...+........+..||||||+++ .+++..+
T Consensus 259 ~~~~~~pvIl~GDFN~~p~~~~--~~~~gl~Da~~~~~~~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~-~l~~~~~ 335 (362)
T 4gew_A 259 AQNPGALVFFGGDLNLRDEEVS--RVPDGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSG-PLDKVKF 335 (362)
T ss_dssp HHCTTCEEEEEEECCCCGGGCC--CCCTTCEEHHHHTTCCGGGCCSEETTTCTTSCCSSCCEECCEEEEEES-SCCEEEE
T ss_pred hcCCCCCeEEeecCCCCCcccc--hhcchHHHHHHHhCCCCCCCcCcccccCcccccCCCCCcceEEEEEcC-CcceeEE
Confidence 578999999998876543 34578999999886 456789998887766555556678999999995 6888888
Q ss_pred EEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEE
Q 012811 410 DMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTIS 452 (456)
Q Consensus 410 ~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~ 452 (456)
.+++.+.++. .+.++|||+||+++|+
T Consensus 336 ~vi~~~ri~~-----------------~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 336 TLEGRQRIRS-----------------CLCFPSDHWAINATFF 361 (362)
T ss_dssp EEECCSCCTT-----------------TSSCSCSSCEEEEEEE
T ss_pred EEEeeeecCC-----------------CCCCCCcccCEEEEEc
Confidence 8887766542 2457999999999997
No 2
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=100.00 E-value=2.5e-35 Score=277.79 Aligned_cols=236 Identities=24% Similarity=0.331 Sum_probs=181.0
Q ss_pred CCceEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhHHHHHHhCCCccceEEecCCCCCCCCCeEEEEEE
Q 012811 183 SGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQLS 262 (456)
Q Consensus 183 ~~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ailS 262 (456)
..+||||||||++.....+..|...|+++|++++|||||||||.......|.+..+ .|.+.... ...++|++|++
T Consensus 11 ~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~~--~~~~~~~~---~~~~~g~~il~ 85 (256)
T 4fva_A 11 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQS--LYKIYYSN---KGCQYYTAILV 85 (256)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHGGGG--TEEEEESS---TTSSSEEEEEE
T ss_pred CCEEEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecChhHhHHHHHhcC--CceEeecC---CCCCcceEEEE
Confidence 45899999999988777788999999999999999999999999777777776542 33333322 24567889987
Q ss_pred eee--cceeeEeeCCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc------
Q 012811 263 KLQ--AKSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK------ 334 (456)
Q Consensus 263 r~p--i~~~~~~~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~------ 334 (456)
+.+ +.....+.++.....+.++.+.+.++ |+.+.|+|+|+.+... ....|..|++.+.+.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~v~~~Hl~~~~~--------~~~~~~~q~~~~~~~~~~~~~~~~ 156 (256)
T 4fva_A 86 SKMFDVEKHDVIHFQNSGMYRTLQILEGSIG-GLKVFLLNTHLESTRE--------HRPQRCAQFGFCMDKVREIIAQNP 156 (256)
T ss_dssp ETTCEEEEEEEEECTTCSSCCEEEEEEEEET-TEEEEEEEEECCCSGG--------GHHHHHHHHHHHHHHHHHHHHHST
T ss_pred eecccceecccccCCCCcccceeEEEEEEeC-CeEEEEEEecCCCCCc--------chHHHHHHHHHHHHHhhhhhhccC
Confidence 754 44555566777666788888899998 7899999999998732 346677777777665532
Q ss_pred CCCEEEEccCCCCCCCCCCcCCCCCccccccccc-CCCCCccccCCCCccccCCCccCCCccEEEEecCCCccceEEEee
Q 012811 335 NPNVIFCGDMNWDDKLDGKFPLPDGWVDAWTELR-PGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIG 413 (456)
Q Consensus 335 ~~pvIl~GDFN~~~~~~~~~~l~~gl~D~~~~~~-~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~~g 413 (456)
+.|+|++||||..+.+... ...++.|+|..++ +.+.++||+...+........+..||||||+++ .+++..+++++
T Consensus 157 ~~~vIl~GDfN~~~~~~~~--~~~~~~d~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~-~~~~~~~~~~~ 233 (256)
T 4fva_A 157 GALVFFGGDLNLRDEEVSR--VPDGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSG-PLDKVKFTLEG 233 (256)
T ss_dssp TCEEEEEEECCCCGGGCCC--CCTTCEEHHHHTTCCGGGCCSEETTTCCSSCSCCSCEECCEEEEEES-SCCEEEEEEEC
T ss_pred CCcEEEeccCCCCcchhhh--hhcchhhHHHHhCCCCCCCcccccccCcccccCCCCCcCeEEEEEcC-CceeeEEEEEe
Confidence 6799999999987755433 3468999999885 456789998887766555556678999999995 68888888887
Q ss_pred ccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEE
Q 012811 414 VEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTIS 452 (456)
Q Consensus 414 ~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~ 452 (456)
.+.++. .+.++|||+||+++|+
T Consensus 234 ~~~~~~-----------------~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 234 RQRIRS-----------------CLCFPSDHWAINATFF 255 (256)
T ss_dssp CSCCTT-----------------TCSCSCSSCEEEEEEE
T ss_pred eEecCC-----------------CCCCcCcccCEEEEEc
Confidence 766541 2457999999999997
No 3
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=100.00 E-value=4.9e-34 Score=268.68 Aligned_cols=239 Identities=31% Similarity=0.462 Sum_probs=175.2
Q ss_pred CCceEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhHHHHHHhCCCccceEEecCCCCCCCCCeEEEEEE
Q 012811 183 SGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQLS 262 (456)
Q Consensus 183 ~~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ailS 262 (456)
..+||||||||++.....+..|+..|+++|++++|||||||||.....+.|.+..+ .|.+.... ..+++.++++
T Consensus 7 ~~~l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~~--~~~~~~~~----~~~~~~~~l~ 80 (256)
T 4gz1_A 7 SSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAA--SYTIITGN----EEGYFTAILL 80 (256)
T ss_dssp GGEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHHCT--TEEEEESC----SSSSEEEEEE
T ss_pred CCcEEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHhhcc--ccceeecc----ccCCceEEEE
Confidence 36899999999998777788999999999999999999999999888888887543 33333322 2344545544
Q ss_pred e---eecceeeEeeCCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc---CC
Q 012811 263 K---LQAKSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK---NP 336 (456)
Q Consensus 263 r---~pi~~~~~~~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~---~~ 336 (456)
+ +++.......++.....+.++.+.+..+ |..+.|+|+|+.+.. .....|..|+..+.+.+++ +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~Hl~~~~--------~~~~~~~~q~~~~~~~l~~~~~~~ 151 (256)
T 4gz1_A 81 KKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLG-GNEFCLMTSHLESTR--------EHSAERIRQLKTVLGKMQEAPDST 151 (256)
T ss_dssp ETTTEEEEEEEEEECTTCSSCCEEEEEEEEET-TEEEEEEECBCCCSG--------GGHHHHHHHHHHHHHHHHHSCTTS
T ss_pred EeccccceecccccCCcccccceEEEEEEEeC-CEEEEEEeecccccc--------cchhhhhHHHHHHhhhhhhccCcc
Confidence 3 3344444455555555677888888887 789999999998863 3457789999999998865 56
Q ss_pred CEEEEccCCCCCCCCCC-cCCCCCccccccccc-CCCCCccccCCCCccccCCCccCCCccEEEEecCC--CccceEEEe
Q 012811 337 NVIFCGDMNWDDKLDGK-FPLPDGWVDAWTELR-PGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRD--FKIIRIDMI 412 (456)
Q Consensus 337 pvIl~GDFN~~~~~~~~-~~l~~gl~D~~~~~~-~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~--~~~~~~~~~ 412 (456)
|+|||||||..+.+... .....++.|+|..++ +.+..++|+...+...........||||||+++.. +.+..++++
T Consensus 152 pvIl~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~ 231 (256)
T 4gz1_A 152 TVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLV 231 (256)
T ss_dssp EEEEEEECCCCHHHHHHHTCSCTTEEEHHHHTTCCGGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-CSEEEEEEEEE
T ss_pred eEEEeCccCCCcchhhhhhhccchhhhHHHHhcCCCCCCcccccCCCCccccCCCCCccEEEEEEECCccceeeeEEEEE
Confidence 89999999987654332 234568899998885 44566777766555444444567899999998543 445567776
Q ss_pred eccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEec
Q 012811 413 GVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 454 (456)
Q Consensus 413 g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~~ 454 (456)
+.+.++ .+.++|||+||+++|++.
T Consensus 232 ~~~~~~------------------~~~~~SDH~pv~a~~~iv 255 (256)
T 4gz1_A 232 GLEKLD------------------CGRFPSDHWGLLCTLNVV 255 (256)
T ss_dssp CCSCCT------------------TSSCSCSBCEEEEEEEEC
T ss_pred eccccC------------------CCCCCCccccEEEEEEEE
Confidence 655432 356799999999999985
No 4
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=100.00 E-value=5.8e-34 Score=265.60 Aligned_cols=237 Identities=27% Similarity=0.354 Sum_probs=175.3
Q ss_pred CceEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhHHHHHHhCCCccceEEecCCCCCCCCCeEEEEE--
Q 012811 184 GSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQL-- 261 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ail-- 261 (456)
.+||||||||++.....+..|+..|+++|++++|||||||||.......|....+.+.|. .. . ....++.+++
T Consensus 2 ~~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~~~~~~~-~~-~---~~~~~~~~~~~~ 76 (250)
T 4f1h_A 2 SKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAYVQYLKKRAVSYLFF-EG-S---DDGYFTGIMLRK 76 (250)
T ss_dssp CCEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHHCTTEEEE-ES-C---SSSSEEEEEEET
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhccCceee-cc-c---ccccCceeEEee
Confidence 589999999998877778899999999999999999999999988888887754322222 22 1 1233455555
Q ss_pred EeeecceeeEeeCCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc---CCCE
Q 012811 262 SKLQAKSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK---NPNV 338 (456)
Q Consensus 262 Sr~pi~~~~~~~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~---~~pv 338 (456)
+|+++.....+.++.....+.++.+.+.++ |..+.|+++|+.+.. .....|..|++.+.+++++ ..|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~hl~~~~--------~~~~~r~~q~~~~~~~l~~~~~~~pv 147 (250)
T 4f1h_A 77 SRVKFLESEIICFPTTQMMRNLLIAQVTFS-GQKLYLMTSHLESCK--------NQSQERTKQLRVVLQKIKEAPEDAIV 147 (250)
T ss_dssp TTCEEEEEEEEECTTCSSCCEEEEEEEEET-TEEEEEEECBCCCSG--------GGHHHHHHHHHHHHHHHHHSCTTEEE
T ss_pred ccccceecccccccCccccceEEEEEEecC-CcEEEEecccccccc--------ccHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 568888877777777666788888888887 789999999998763 3457889999999999875 4589
Q ss_pred EEEccCCCCCCCCCC-cCCCCCcccccccccCC-CCCccccCCCCccccCCCccCCCccEEEEecCC----CccceEEEe
Q 012811 339 IFCGDMNWDDKLDGK-FPLPDGWVDAWTELRPG-ENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRD----FKIIRIDMI 412 (456)
Q Consensus 339 Il~GDFN~~~~~~~~-~~l~~gl~D~~~~~~~~-~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~----~~~~~~~~~ 412 (456)
|||||||+.+.+... .....++.|+|..+++. ..+++|+...+........+..||||||+++.. +.+....++
T Consensus 148 Il~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~ 227 (250)
T 4f1h_A 148 IFAGDTNLRDAEVANVGGLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAPPVTPDHMALI 227 (250)
T ss_dssp EEEEECCCCHHHHHTTTSSCTTEEEHHHHTTCCGGGCCSEETTTCCSSCCSSCCEECCEEEEEECCTTSCCCEEEEEEEE
T ss_pred EEEEecCCCCcchhhhhhccccchHHHHHhcCCccCCcccccccCCCCCcCCCCCccEEEEEEeCcccccceeeeEEEEe
Confidence 999999987654333 33556889999888633 456677666555444444566899999998532 233455555
Q ss_pred eccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEE
Q 012811 413 GVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTIS 452 (456)
Q Consensus 413 g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~ 452 (456)
+.+.++ ...++|||+||+++|+
T Consensus 228 ~~~~~~------------------~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 228 GMEKLD------------------CGRYTSDHWGIYCTFN 249 (250)
T ss_dssp CCSCCT------------------TSSCSCSBCEEEEEEE
T ss_pred cccccC------------------CCCCCCcccCEEEEEe
Confidence 544432 3567999999999996
No 5
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=100.00 E-value=2.4e-32 Score=258.73 Aligned_cols=231 Identities=17% Similarity=0.201 Sum_probs=173.6
Q ss_pred eEEEEEeccCCCCC----ChhhHHHHHHHHHhhCCCcEEEEeccCHhHHHHHHhCCCccceEEecCCCCCCCCCeEEEEE
Q 012811 186 LKILSYNVWFREDL----EMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQL 261 (456)
Q Consensus 186 lrV~T~Nv~~~~~~----~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ail 261 (456)
||||||||++.... .|..|...|+++|..++|||||||||.....+.|.+.+ +|.+..........++|++||
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l---~y~~~~~~~~~~~~~~g~ail 77 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKAYT---TFTCLSAEREGDGQGEGLAIL 77 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHHS---SSEEEEEESSSSSCSCEEEEE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHhcC---CCcEEEecccCCCCCceEEEE
Confidence 79999999987643 35689999999999999999999999977766666643 343322211112567899999
Q ss_pred Ee---eecceeeEeeCCC----------CCCCCceEEEEEEeC-CcceEEEEEeccCCCCCCCCccccccHHHHHHHHHH
Q 012811 262 SK---LQAKSFTCEPFRN----------SIMGRELCVAEVEVQ-GKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKE 327 (456)
Q Consensus 262 Sr---~pi~~~~~~~~~~----------~~~~R~~~~~~i~~~-~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~ 327 (456)
+| +|+.....+.++. ....|.++++.++.. +|+.+.|+|+|+.+.. ...|..|++.
T Consensus 78 ~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----------~~~r~~q~~~ 147 (257)
T 3l1w_A 78 YNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHIS----------AHARLAGMTV 147 (257)
T ss_dssp ECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSC----------HHHHHHHHHH
T ss_pred EEcceEEEEecCeEECcCCCCcccccccccccceeEEEEEEEcCCCCEEEEEEeCCCCCC----------HHHHHHHHHH
Confidence 98 9998887776542 124688888999886 3789999999998762 3679999999
Q ss_pred HHHHhhc---CCCEEEEccCCCCCCCCCCcCCCCCcccccccccCCCCCccccCCCCccccCCCccCCCccEEEEecCCC
Q 012811 328 AINLLKK---NPNVIFCGDMNWDDKLDGKFPLPDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDF 404 (456)
Q Consensus 328 l~~~l~~---~~pvIl~GDFN~~~~~~~~~~l~~gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~~ 404 (456)
+.+++++ ..|+|||||||+.+.+..+..+..+|.|+|...++.+.++||++..+.. ......||||||+ ..+
T Consensus 148 l~~~i~~~~~~~pvil~GDfN~~~~~~~~~~l~~~l~d~~~~~~~~~~~~t~~~~~~~~---~~~~~~riD~i~~--~~~ 222 (257)
T 3l1w_A 148 ILEELHDKIAQYPTLLMGDFNAESGEEVHQLVQKKFQDSKNLATHYGPRGTFQNFTYTK---PWAELEEIDYIYV--KGW 222 (257)
T ss_dssp HHHHTHHHHHHSCEEEEEECCCCTTSHHHHHHTTTCEEGGGTSEEESCSCCBCTTCTTC---CGGGCBCCEEEEE--ESE
T ss_pred HHHHHHHHcCCCCEEEEeeCCCCCCcHHHHHhhhhccchhhhhcccCCCCcccCCcccC---CCCCCCceeEEEE--CCc
Confidence 9998872 3399999999999887777667779999999886557788887763220 0123489999999 367
Q ss_pred ccceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEec
Q 012811 405 KIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 454 (456)
Q Consensus 405 ~~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~~ 454 (456)
++....++.... ....+|||+||+++|++.
T Consensus 223 ~~~~~~v~~~~~--------------------~~~~~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 223 QVQQTASLTDSI--------------------DGRFPSDHFPLEAEVAGE 252 (257)
T ss_dssp EEEEEEECCCCB--------------------TTBCSSSBCCEEEEEEEC
T ss_pred EEEEEEEeccCc--------------------CCcccCCcceEEEEEEEE
Confidence 777777652211 134689999999999875
No 6
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.98 E-value=1.4e-32 Score=261.16 Aligned_cols=237 Identities=17% Similarity=0.193 Sum_probs=170.8
Q ss_pred CceEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHh------------------HHHHHHhCCCccceEEe
Q 012811 184 GSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPN------------------IYDILCKSSWWKGYRCS 245 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~------------------~~~~L~~~~~~~~y~~~ 245 (456)
++||||||||++........++..|+++|.+++|||||||||... ..+.|.+.++ .+|.+.
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~-~~y~~~ 80 (266)
T 3teb_A 2 NAMKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTD-TDYYLH 80 (266)
T ss_dssp -CEEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCC-SCCEEE
T ss_pred CceEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCC-CCeEEE
Confidence 579999999998776667889999999999999999999999521 3456665431 234432
Q ss_pred c--CCCCCCCCCeEEEEEEeeecceeeEeeCCCC-----CCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccH
Q 012811 246 V--PNEMADSRGYFCMQLSKLQAKSFTCEPFRNS-----IMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFS 318 (456)
Q Consensus 246 ~--~~~~~~~~~~g~ailSr~pi~~~~~~~~~~~-----~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~ 318 (456)
. .........+|++||||+|+.....+.++.. ...|.++.++++++ |+.+.|+|+|+.+.... .
T Consensus 81 ~~~~~~~~~~~~~g~ailsr~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~v~~~Hl~~~~~~--------~ 151 (266)
T 3teb_A 81 WSNSHIGFGKYNEGVAVITRHKIKAEDEFYCTFAQSVRTISARRIVSITINYE-GQDIEFYSCHMNLPNCE--------T 151 (266)
T ss_dssp EEEEEECSTTEEEEEEEEESSCCSEEEEEECSSCCCTTCTTCCEEEEEEEEET-TEEEEEEEEECCCTTCT--------T
T ss_pred EeccccCccccCCeEEEEECceecCceeEEeCCCCCCCCcccceEEEEEEEeC-CeEEEEEEecCCCccCC--------h
Confidence 1 1111123457899999999988887776532 13588889999987 78999999999887432 2
Q ss_pred HHHHHHHHHHHHHhhcCCCEEEEccCCCCC--CCCCCcCC-CCCcccccccccCCCCCccccCCCCccccCCCccCCCcc
Q 012811 319 KERVEQAKEAINLLKKNPNVIFCGDMNWDD--KLDGKFPL-PDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLD 395 (456)
Q Consensus 319 ~~R~~Q~~~l~~~l~~~~pvIl~GDFN~~~--~~~~~~~l-~~gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~rID 395 (456)
..|..|++.+.+.+.+..|+||+||||+.+ .+..+..+ ..+|.|+|..+++...++||....+.... .....|||
T Consensus 152 ~~r~~q~~~l~~~~~~~~~~il~GDfN~~~~~~~~~~~~l~~~~l~d~~~~~~~~~~~~t~~~~~~~~~~--~~~~~riD 229 (266)
T 3teb_A 152 EDMGKNIQTILNRTQNSNLKILMGDFNTDAIGNVAAYENILSQGLFDTYVMAEKKDDGITVDKSIHGWDN--DKAKKRLD 229 (266)
T ss_dssp CCHHHHHHHHHTSSCSCCEEEEEEECCCCTTTCHHHHHHHHTTTCEEHHHHCSEECCCCCEECC--------CTTEECCE
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeECCCCCCCCCcHHHhhccccccchHHhhccccCCccccCccCCcCc--CCcCCeeE
Confidence 358899999999998888999999999988 44444433 45899999998776777887544332211 13557999
Q ss_pred EEEEecCCCccceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEe
Q 012811 396 RFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISN 453 (456)
Q Consensus 396 ~I~~s~~~~~~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~ 453 (456)
|||++. .+.+....++.... .+..+|||+||+++|++
T Consensus 230 ~i~~s~-~~~~~~~~v~~~~~--------------------~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 230 YIFSNK-ELKVKESKVIFNNK--------------------NKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp EEEESS-CCCEEEEEEESSSS--------------------SSCCCSSSCEEEEEECC
T ss_pred EEEeCC-CeEEEEEEEEeCCC--------------------CCCCcCCccCEEEEEEC
Confidence 999994 67777776642210 12468999999999974
No 7
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.97 E-value=1.8e-31 Score=254.32 Aligned_cols=232 Identities=15% Similarity=0.158 Sum_probs=172.0
Q ss_pred CceEEEEEeccCCCC----CChhhHHHHHHHHHhhCCCcEEEEeccCHhHHHHHHhCCCccceEEec-CCCCCCCCCeEE
Q 012811 184 GSLKILSYNVWFRED----LEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSV-PNEMADSRGYFC 258 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~----~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~~L~~~~~~~~y~~~~-~~~~~~~~~~g~ 258 (456)
++||||||||++... ..|..|...|+++|.+++|||||||||.....+.|.+.+ .+|.+.. ....+...+.++
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l--~~y~~~~~~~~~~~~~g~~~ 79 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQDLRAGL--PEYDGIGVGRDDGKTAGEYA 79 (267)
T ss_dssp EEEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHC--TTEEEECCCTTTSSSSSCBC
T ss_pred CcEEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHhc--cCCcEEEecCCCCCcCCcee
Confidence 479999999998863 345789999999999999999999999987777776643 3454433 222222345568
Q ss_pred EEE---EeeecceeeEeeCCCC-----------CCCCceEEEEEEe-CCcceEEEEEeccCCCCCCCCccccccHHHHHH
Q 012811 259 MQL---SKLQAKSFTCEPFRNS-----------IMGRELCVAEVEV-QGKKPLVVATSHLESPCPGPPTWDQMFSKERVE 323 (456)
Q Consensus 259 ail---Sr~pi~~~~~~~~~~~-----------~~~R~~~~~~i~~-~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~ 323 (456)
+|| ||+|+.....+.++.. ...|.++++.++. .+|..+.|+|+|+.+.. ...|..
T Consensus 80 ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----------~~~R~~ 149 (267)
T 3g6s_A 80 PLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVG----------EEARRQ 149 (267)
T ss_dssp CEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSC----------HHHHHH
T ss_pred EEEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEEcCCCCEEEEEEeCCCCCC----------HHHHHH
Confidence 898 8999998877655321 2357788898886 34789999999998763 467899
Q ss_pred HHHHHHHHhhc---CCCEEEEccCCCCCCCCCCcCCCC-C--ccccccccc-CCCCCccccCCCCccccCCCccCCCccE
Q 012811 324 QAKEAINLLKK---NPNVIFCGDMNWDDKLDGKFPLPD-G--WVDAWTELR-PGENGWTYDTKSNKMLSGNRTLQKRLDR 396 (456)
Q Consensus 324 Q~~~l~~~l~~---~~pvIl~GDFN~~~~~~~~~~l~~-g--l~D~~~~~~-~~~~~~T~~~~~~~~~~~~~~~~~rID~ 396 (456)
|++.+.+++++ ..|+|||||||+.+.+..+..+.. + |.|+|...+ +.+..+||+...... .....||||
T Consensus 150 q~~~l~~~l~~~~~~~pvIl~GDfN~~~~~~~~~~l~~~~~~l~d~~~~~~~~~~~~~T~~~~~~~~----~~~~~riD~ 225 (267)
T 3g6s_A 150 SALLIIRKIKEIVGERPAVVTGDFNVTDASDAYETITTNEFVMKDAYKTAARVTGVDYTFHDFARIP----AEDCEKIDF 225 (267)
T ss_dssp HHHHHHHHHHHHTTTSCEEEEEECSSCTTSHHHHHHHSSSSCCEEHHHHCSEEEECSCSBCTTTTSC----GGGCCCCEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEeECCCCCCCHHHHHhhcCCcchhhhHhhhccccCCCCCEeCCCCCC----CCCCCcEeE
Confidence 99999988876 679999999999887766555443 3 999999875 345678888763220 135589999
Q ss_pred EEEecCCCccceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEe
Q 012811 397 FICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISN 453 (456)
Q Consensus 397 I~~s~~~~~~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~ 453 (456)
||+++ .+++....++.... .+ ++|||+||++++..
T Consensus 226 I~~s~-~~~~~~~~v~~~~~--------------------~~-~~SDH~PV~a~~~~ 260 (267)
T 3g6s_A 226 IFVTP-QVLVKSCEIPAEVP--------------------EA-LLSDHNPQLADLEL 260 (267)
T ss_dssp EEECT-TSEEEEEEECCCCS--------------------SS-CCCSBCCEEEEEEE
T ss_pred EEeCC-CceEEEEEEecCCC--------------------CC-CCCCcccEEEEEEe
Confidence 99995 67777777742110 13 68999999999875
No 8
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.4e-30 Score=252.64 Aligned_cols=254 Identities=17% Similarity=0.164 Sum_probs=172.4
Q ss_pred CCceEEEEEeccCCCC------CChhhHHHHHHHHHhhCCCcEEEEeccCHhHHHHHHhCCCccceEEecCCC-CCCCCC
Q 012811 183 SGSLKILSYNVWFRED------LEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNE-MADSRG 255 (456)
Q Consensus 183 ~~~lrV~T~Nv~~~~~------~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~~L~~~~~~~~y~~~~~~~-~~~~~~ 255 (456)
..+||||||||++... ..|..|...|+++|.+.+|||||||||.....+.|.+.+ ..|.+..... .+...+
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l--~~y~~~~~~~~~g~~~g 81 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKDMKEAL--PGYDYIGVGRDDGKDKG 81 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHS--TTEEEECCCTTTSSSSS
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHhC--CCCcEEEEecCCCCCCC
Confidence 4579999999987642 346789999999999999999999999987777777654 3444432222 122345
Q ss_pred eEEEEE---EeeecceeeEeeCCCC----------CCCCceEEEEEEe-CCcceEEEEEeccCCCCCCCCccccccHHHH
Q 012811 256 YFCMQL---SKLQAKSFTCEPFRNS----------IMGRELCVAEVEV-QGKKPLVVATSHLESPCPGPPTWDQMFSKER 321 (456)
Q Consensus 256 ~g~ail---Sr~pi~~~~~~~~~~~----------~~~R~~~~~~i~~-~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R 321 (456)
.+++|| ||+|+.....+.++.. ...|.++++.++. .+|+.|.|+|+|+.+.. ...|
T Consensus 82 ~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----------~~~R 151 (298)
T 3mpr_A 82 EHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIG----------KKAR 151 (298)
T ss_dssp CBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSC----------HHHH
T ss_pred ceeEEEEecCceEEEeccEEEccCCCCccCcccccccCceeEEEEEEEcCCCCEEEEEEecCCCCC----------HHHH
Confidence 568998 9999998887655321 1357788888885 34789999999998652 4779
Q ss_pred HHHHHHHHHHhhc-----CCCEEEEccCCCCCCCCCCcCCCC-C-ccccccccc-CCCCCccccCCCCccccCCCccCCC
Q 012811 322 VEQAKEAINLLKK-----NPNVIFCGDMNWDDKLDGKFPLPD-G-WVDAWTELR-PGENGWTYDTKSNKMLSGNRTLQKR 393 (456)
Q Consensus 322 ~~Q~~~l~~~l~~-----~~pvIl~GDFN~~~~~~~~~~l~~-g-l~D~~~~~~-~~~~~~T~~~~~~~~~~~~~~~~~r 393 (456)
..|++.+.+++++ ..|+|||||||+.+.+..+..+.. + |.|+|...+ +.+..+||+..... ..+..|
T Consensus 152 ~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~~~~~l~~~g~l~D~~~~~~~~~~~~~T~~~~~~~-----~~~~~r 226 (298)
T 3mpr_A 152 VESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKCDYRYALNGTFNNFDPN-----SFTESR 226 (298)
T ss_dssp HHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTSHHHHHHHTTSSSEEHHHHCSEEECSSCSBCTTCTT-----CCCSCC
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCHHHHHHhcCCcchhhHhhhcccCCCCCCccCCCCC-----CCCCce
Confidence 9999999988865 469999999999988766655543 3 999998775 23456788765321 135689
Q ss_pred ccEEEEecCCCccceEEEeeccccCCc---hhhhhhhhhhhhhc-cCCCCCccCCcceeEEEEec
Q 012811 394 LDRFICSLRDFKIIRIDMIGVEAIPGL---LYVKEKKVRKEMQK-LELPVLPSDHYGLLLTISNN 454 (456)
Q Consensus 394 ID~I~~s~~~~~~~~~~~~g~d~~p~~---~~~~~~~~~~~~~~-~~~~~~~SDH~pV~~~~~~~ 454 (456)
|||||+++ .+++...+++........ ..........++.. ......+|||+||++++...
T Consensus 227 ID~Il~s~-~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~ 290 (298)
T 3mpr_A 227 IDHIFVSP-SFHVKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVFD 290 (298)
T ss_dssp CEEEEECT-TSEEEEEEECCCCEEEECC----------------CCEEEECSSSBCCEEEEEEEC
T ss_pred EEEEEeCC-CeeEEEEEEecCccccCCCcccccCcccchhhhccChhhcccCCCCCcEEEEEecc
Confidence 99999994 688887777522111000 00000001111100 00112579999999999764
No 9
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.96 E-value=4.7e-29 Score=241.64 Aligned_cols=212 Identities=16% Similarity=0.136 Sum_probs=140.8
Q ss_pred CCceEEEEEeccCCCC-----CChhhHHHHHHHHHhhCCCcEEEEeccCHhH-HHHHHh-CCCccceEEecCCCC--C--
Q 012811 183 SGSLKILSYNVWFRED-----LEMHPRMKTIGDLIQLHSPDIICFQEITPNI-YDILCK-SSWWKGYRCSVPNEM--A-- 251 (456)
Q Consensus 183 ~~~lrV~T~Nv~~~~~-----~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~-~~~L~~-~~~~~~y~~~~~~~~--~-- 251 (456)
...||||||||++... +....|.+.+.+.|...+|||||||||.... .+.|.+ ....++|.+...... +
T Consensus 8 ~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 87 (301)
T 1zwx_A 8 PGNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGWD 87 (301)
T ss_dssp CCSCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCS
T ss_pred CCceEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCccccccCCcccccc
Confidence 3579999999998742 1225778888888889999999999998432 333321 111234443221110 0
Q ss_pred ---------CCCCeEEEEEEeeecceeeEeeCCCC-----CCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCcccccc
Q 012811 252 ---------DSRGYFCMQLSKLQAKSFTCEPFRNS-----IMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMF 317 (456)
Q Consensus 252 ---------~~~~~g~ailSr~pi~~~~~~~~~~~-----~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~ 317 (456)
....+|++||||+||.....+.++.. ...|.++.++++++ |+.+.|+|+||.+...... +...
T Consensus 88 ~~~g~~~~~~~~~~G~ailSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-g~~~~v~~~Hl~~~~~~~~--~~~~ 164 (301)
T 1zwx_A 88 KTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIMKN-GKPYHIIGTHTQADDSLIS--KDTS 164 (301)
T ss_dssp EEEC-----CCBCCCCEEEESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEEET-TEEEEEEEEECCCCCTTSC--HHHH
T ss_pred ccccccccccccCCCEEEEecCCcccceEEEecCCCCcccccCCCeEEEEEEEC-CEEEEEEEecCCCCCCCCC--cccc
Confidence 12347899999999998887777632 13578889999997 7899999999998743210 0123
Q ss_pred HHHHHHHHHHHHHHhhc-----CCCEEEEccCCCCCCCCCCcCCCC--Ccc--cccccccCCCCCccccCCCCccc--cC
Q 012811 318 SKERVEQAKEAINLLKK-----NPNVIFCGDMNWDDKLDGKFPLPD--GWV--DAWTELRPGENGWTYDTKSNKML--SG 386 (456)
Q Consensus 318 ~~~R~~Q~~~l~~~l~~-----~~pvIl~GDFN~~~~~~~~~~l~~--gl~--D~~~~~~~~~~~~T~~~~~~~~~--~~ 386 (456)
...|..|++.|.+++++ +.|+|||||||+.+.+..+..+.. ++. |+|. +.++||+...|... ..
T Consensus 165 ~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~~~~~l~~~~~~~~~d~~~-----g~~~T~~~~~n~~~~~t~ 239 (301)
T 1zwx_A 165 RAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLKLLNVSSPANFN-----GQMATWDPTTNSMLKESY 239 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHHHHHHHHTBCCCTTCC-----TTSCSBCTTTCHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCcHHHHHHHHHcCCCCCcccc-----CCCceECCccCccccccC
Confidence 46799999999999865 368999999999987765443322 333 5654 34677765433210 00
Q ss_pred CCccCCCccEEEEecC
Q 012811 387 NRTLQKRLDRFICSLR 402 (456)
Q Consensus 387 ~~~~~~rID~I~~s~~ 402 (456)
...+..||||||+++.
T Consensus 240 ~~~~~~rID~I~~~~~ 255 (301)
T 1zwx_A 240 PKAAPEYLDYIFVENG 255 (301)
T ss_dssp TTSCCBCCEEEEEBTT
T ss_pred CCCCcceEeEEEEeCC
Confidence 1135689999999954
No 10
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.96 E-value=1.4e-28 Score=240.67 Aligned_cols=221 Identities=19% Similarity=0.151 Sum_probs=145.9
Q ss_pred CCCCceEEEEEeccCCC-----CCChhhHHHHHHHHHhhCCCcEEEEeccCHhH-H-HHHHhCCCccceEEecCCCC--C
Q 012811 181 AVSGSLKILSYNVWFRE-----DLEMHPRMKTIGDLIQLHSPDIICFQEITPNI-Y-DILCKSSWWKGYRCSVPNEM--A 251 (456)
Q Consensus 181 ~~~~~lrV~T~Nv~~~~-----~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~-~-~~L~~~~~~~~y~~~~~~~~--~ 251 (456)
.+..+||||||||++.. ...+..|...|..+|...+|||||||||.... . ..+......++|.+...... +
T Consensus 25 ~~~~~lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~~~~~g~~~~~ 104 (317)
T 3i41_A 25 KDDTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSG 104 (317)
T ss_dssp ---CCCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTT
T ss_pred CCCCceEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcccccCCccccC
Confidence 34578999999999874 22467888888988888999999999997431 2 22222211345543221110 0
Q ss_pred C-----------CCCeEEEEEEeeecceeeEeeCCCC-----CCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCcccc
Q 012811 252 D-----------SRGYFCMQLSKLQAKSFTCEPFRNS-----IMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQ 315 (456)
Q Consensus 252 ~-----------~~~~g~ailSr~pi~~~~~~~~~~~-----~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~ 315 (456)
. ....|++||||+||.....+.++.. ...|.++.++++++ |+.|.|+|+||.+...... +.
T Consensus 105 ~~~~~~~y~~~~~~~~G~~ilSr~Pi~~~~~~~~~~~~~~d~~~~r~~~~~~i~~~-g~~v~v~~~Hl~~~~~~~~--~~ 181 (317)
T 3i41_A 105 WDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKN-GKNVHVIGTHTQSEDSRCG--AG 181 (317)
T ss_dssp CSEEEESCCSSCSBCCCCEEEESSCEEEEEEEECSCCCSSGGGBCCEEEEEEEEET-TEEEEEEEEECCCCCSSSC--TT
T ss_pred ccCcccccccccccCCccEEEeCCCCccceeEECCCCCCcccccCcceEEEEEEEC-CEEEEEEEECCCCCCCCCc--cc
Confidence 0 0114899999999999888877653 23578889999998 7899999999998753211 01
Q ss_pred ccHHHHHHHHHHHHHHhhc-----CCCEEEEccCCCCCCCCCCcCCCC--CcccccccccCCCCCccccCCCCcccc--C
Q 012811 316 MFSKERVEQAKEAINLLKK-----NPNVIFCGDMNWDDKLDGKFPLPD--GWVDAWTELRPGENGWTYDTKSNKMLS--G 386 (456)
Q Consensus 316 ~~~~~R~~Q~~~l~~~l~~-----~~pvIl~GDFN~~~~~~~~~~l~~--gl~D~~~~~~~~~~~~T~~~~~~~~~~--~ 386 (456)
.....|..|+..|.+++++ ..|+|||||||+.+.+..+..+.. ++.|.- ..+..+||+...|.+.. .
T Consensus 182 ~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s~~~~~l~~~l~l~~~~----~~g~~~t~d~~~n~~~~~~~ 257 (317)
T 3i41_A 182 HDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVL----YAGHNSTWDPQSNSIAKYNY 257 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSHHHHHHHHHHTBCCCE----EEECSCSBCTTTCHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCCHHHHHHHHhcCCCCcc----cCCCCcccCCCCCccccccC
Confidence 2357899999999999865 569999999999987665544322 333321 12336788877654211 1
Q ss_pred CCccCCCccEEEEecCCCccce
Q 012811 387 NRTLQKRLDRFICSLRDFKIIR 408 (456)
Q Consensus 387 ~~~~~~rID~I~~s~~~~~~~~ 408 (456)
......||||||++.....+..
T Consensus 258 p~~~~~rLDyIlvs~~~~~~~~ 279 (317)
T 3i41_A 258 PNGKPEHLDYIFTDKDHKQPKQ 279 (317)
T ss_dssp TTCCCBCCEEEEEBTTSCCCSS
T ss_pred CCCCCcceEEEEEeCCcCCccc
Confidence 1123469999999965444443
No 11
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.95 E-value=5.5e-29 Score=236.53 Aligned_cols=227 Identities=19% Similarity=0.207 Sum_probs=152.0
Q ss_pred eEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhH----HHHHHhCCCccceEEecCCCCCCCCCeEEEEE
Q 012811 186 LKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNI----YDILCKSSWWKGYRCSVPNEMADSRGYFCMQL 261 (456)
Q Consensus 186 lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~----~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ail 261 (456)
||||||||++.. .|...|+++|.+.+||||||||+.... .+.+... +|.+.... ..+.+|++||
T Consensus 1 lrv~t~Nv~~~~-----~~~~~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~~~----gy~~~~~~---~~~~~G~ail 68 (268)
T 1ako_A 1 MKFVSFNINGLR-----ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKL----GYNVFYHG---QKGHYGVALL 68 (268)
T ss_dssp CEEEEEECSCGG-----GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHT----TCEEEEEE---ETTEEEEEEE
T ss_pred CEEEEEehhHHH-----HHHHHHHHHHHHcCCCEEEEEeccCChhhCCHhHhccC----CCcEEEeC---CCCcceEEEE
Confidence 799999998763 467889999999999999999998332 2334432 33332221 2345789999
Q ss_pred EeeecceeeEeeCCCC--CCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc----C
Q 012811 262 SKLQAKSFTCEPFRNS--IMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK----N 335 (456)
Q Consensus 262 Sr~pi~~~~~~~~~~~--~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~----~ 335 (456)
||+|+..... .++.. ...|.++.+++.++ +..+.|+|+|+++...... ......|..|++.+.+++++ .
T Consensus 69 sr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~Hl~~~~~~~~---~~~~~~r~~~~~~l~~~~~~~~~~~ 143 (268)
T 1ako_A 69 TKETPIAVRR-GFPGDDEEAQRRIIMAEIPSL-LGNVTVINGYFPQGESRDH---PIKFPAKAQFYQNLQNYLETELKRD 143 (268)
T ss_dssp ESSCCSEEEE-SSTTCCHHHHTTEEEEEEEET-TEEEEEEEEECCCCCBTTC---TTHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred EecCcceeee-CCCCcccccCCCEEEEEEEcC-CCeEEEEEEEecCCCCccc---chhHHHHHHHHHHHHHHHHHhhhCC
Confidence 9999876543 23321 23477888999998 5699999999998753211 01124678888888888863 6
Q ss_pred CCEEEEccCCCCCCCCCCc---------------------------CCCCCcccccccccCC-CCCccccCCCCccccCC
Q 012811 336 PNVIFCGDMNWDDKLDGKF---------------------------PLPDGWVDAWTELRPG-ENGWTYDTKSNKMLSGN 387 (456)
Q Consensus 336 ~pvIl~GDFN~~~~~~~~~---------------------------~l~~gl~D~~~~~~~~-~~~~T~~~~~~~~~~~~ 387 (456)
.|+|||||||+.+.+.... ....+|.|+|+..++. +..|||..........
T Consensus 144 ~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~gl~D~~~~~~~~~~~~~T~~~~~~~~~~~- 222 (268)
T 1ako_A 144 NPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDD- 222 (268)
T ss_dssp SCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSCCSBCCTTTTHHHH-
T ss_pred CCEEEEeECCCCCchhcccCcccChhhhccCCCcCcCHHHHHHHHHHhcCCCEEeEhhhCCCCCCCeeEeCCcCCcccc-
Confidence 7999999999987654321 1234799999988765 3568987653211110
Q ss_pred CccCCCccEEEEecCCCc--cceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEE
Q 012811 388 RTLQKRLDRFICSLRDFK--IIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTIS 452 (456)
Q Consensus 388 ~~~~~rID~I~~s~~~~~--~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~ 452 (456)
....||||||+++ .+. +....+. .+. .....+|||+||+++|+
T Consensus 223 -~~~~riD~il~s~-~~~~~~~~~~i~-~~~-------------------~~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 223 -NRGLRIDLLLASQ-PLAECCVETGID-YEI-------------------RSMEKPSDHAPVWATFR 267 (268)
T ss_dssp -TCCBCCEEEEEEH-HHHTTEEEEEEC-HHH-------------------HTSSSCCSBCCEEEEEC
T ss_pred -CceEEEEEEEeCH-HHHHHHHhceec-hhh-------------------cCCCCCCCcccEEEEcc
Confidence 1357999999995 332 2244442 100 01236899999999985
No 12
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.95 E-value=3.3e-28 Score=229.53 Aligned_cols=223 Identities=17% Similarity=0.160 Sum_probs=146.2
Q ss_pred eEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhH----HHHHHhCCCccceEEecCCCCCCCCCeEEEEE
Q 012811 186 LKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNI----YDILCKSSWWKGYRCSVPNEMADSRGYFCMQL 261 (456)
Q Consensus 186 lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~----~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ail 261 (456)
||||||||++. ..|...|+++|++++||||||||+.... .+.+.. .+|.+.... ..+.+|++||
T Consensus 1 lrv~t~Nv~~~-----~~~~~~i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~----~gy~~~~~~---~~~~~G~ail 68 (256)
T 2jc4_A 1 MKITTWNVNSL-----NVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQM----MGWHCVWSG---QKTYNGVAIV 68 (256)
T ss_dssp CEEEEEECSCH-----HHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHT----TTCEEEEEC---CSSSCCEEEE
T ss_pred CEEEEEEcCCc-----HHHHHHHHHHHHhcCCCEEEEEeeccchhcCCHhHHhh----cCCeEEECC---CCcceEEEEE
Confidence 79999999965 4678899999999999999999998432 233432 345443322 2345789999
Q ss_pred EeeecceeeEeeCCCC--CCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhh----cC
Q 012811 262 SKLQAKSFTCEPFRNS--IMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLK----KN 335 (456)
Q Consensus 262 Sr~pi~~~~~~~~~~~--~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~----~~ 335 (456)
||+|+..... .++.. ...+.++.+ +++ .+.|+|+|+++...... .....|..|++.|.++++ ..
T Consensus 69 sr~~~~~~~~-~~~~~~~~~~~~~~~~--~~~---~~~v~~~h~~~~~~~~~----~~~~~r~~~~~~l~~~~~~~~~~~ 138 (256)
T 2jc4_A 69 SRSVPQDVHF-GLPALPDDPQRRVIAA--TVS---GVRVINVYCVNGEALDS----PKFKYKEQWFAALTEFVRDEMTRH 138 (256)
T ss_dssp ESSCCEEEEE-SCTTSTTCCSCCEEEE--EET---TEEEEEEECCCCCSTTS----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ECCChHHhee-cCCCCccCCcCcEEEE--EeC---CEEEEEEEecCCCCCCc----HhHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999876544 23321 112234444 443 69999999988753211 112346677777777765 36
Q ss_pred CCEEEEccCCCCCCCCCC--------------------c-CCCCCcccccccccCCCCCccccCCCCccccCCCccCCCc
Q 012811 336 PNVIFCGDMNWDDKLDGK--------------------F-PLPDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRL 394 (456)
Q Consensus 336 ~pvIl~GDFN~~~~~~~~--------------------~-~l~~gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~rI 394 (456)
.|+|||||||+.+.+... . .+..+|.|+|+.+++....+||......... ..+..||
T Consensus 139 ~~~il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~~~--~~~~~rI 216 (256)
T 2jc4_A 139 GKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQ--RKLGLRI 216 (256)
T ss_dssp SSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHHHHHHHHHHHTTTCEEHHHHHCCSSCCCCBCCTTTTHHH--HTCCBCC
T ss_pred CCEEEEeECCCCCchhhccChhHhCCCCCcCHHHHHHHHHHHhcCcEEhhhhhCCCCCceeeEcCCCCccc--cCcEEEE
Confidence 799999999998764211 0 1356899999988877677998764221000 1245799
Q ss_pred cEEEEecCCCc--cceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEe
Q 012811 395 DRFICSLRDFK--IIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISN 453 (456)
Q Consensus 395 D~I~~s~~~~~--~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~ 453 (456)
||||+++ .+. +...++.... .....+|||+||+++|++
T Consensus 217 D~i~~s~-~~~~~~~~~~v~~~~--------------------~~~~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 217 DHILVSP-AMAAALKDVRVDLET--------------------RALERPSDHAPVTAEFDW 256 (256)
T ss_dssp EEEEECH-HHHTTEEEEEECHHH--------------------HTSSSCCSBCCEEEEECC
T ss_pred EEEEECH-HHHhheeEEEEEhhc--------------------ccCCCCCCcccEEEEecC
Confidence 9999984 343 5555553110 012468999999999964
No 13
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.95 E-value=1.8e-27 Score=231.00 Aligned_cols=215 Identities=17% Similarity=0.149 Sum_probs=136.6
Q ss_pred CCceEEEEEeccCCCC-----CChhhHHHHHHHHHhhCCCcEEEEeccCHhH-HHHHHhC-CCccceEEecCCC------
Q 012811 183 SGSLKILSYNVWFRED-----LEMHPRMKTIGDLIQLHSPDIICFQEITPNI-YDILCKS-SWWKGYRCSVPNE------ 249 (456)
Q Consensus 183 ~~~lrV~T~Nv~~~~~-----~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~-~~~L~~~-~~~~~y~~~~~~~------ 249 (456)
...||||||||++... +....|...+...+...+|||||||||.... .+.|.+. ...++|.+.....
T Consensus 7 ~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 86 (306)
T 2ddr_A 7 NDTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEW 86 (306)
T ss_dssp CCEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCSTTS
T ss_pred CCEEEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCceeeccCccccccc
Confidence 3579999999998752 2225678888888888999999999998543 2333211 0023333211110
Q ss_pred --------CCCCCCeEEEEEEeeecceeeEeeCCCC-----CCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccc
Q 012811 250 --------MADSRGYFCMQLSKLQAKSFTCEPFRNS-----IMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQM 316 (456)
Q Consensus 250 --------~~~~~~~g~ailSr~pi~~~~~~~~~~~-----~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~ 316 (456)
......+|++||||+|+.....+.++.. ...|.++.++++++ |+.+.|+|+|+.+...... ...
T Consensus 87 ~~~~~~~~~~~~~~~G~ailSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~-g~~~~v~~~Hl~~~~~~~~--~~~ 163 (306)
T 2ddr_A 87 DKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIKKN-DRFVHVIGTHLQAEDSMCG--KTS 163 (306)
T ss_dssp SEEEESCCTTCSSCCCCEEEESSCEEEEEEEECSCCC----CCCCEEEEEEEEET-TEEEEEEEEECCCC---------C
T ss_pred ccccccccccCccCCeEEEEECCCcccccEEEcCCCCCcchhcCCCeEEEEEEeC-CEEEEEEEECCCCCCCCcc--ccc
Confidence 0112357899999999988777766532 23688899999998 7899999999998743110 001
Q ss_pred cHHHHHHHHHHHHHHhhc-----CCCEEEEccCCCCC------CCCCCcCCCCCcccccccccCCCCCccccCCCCccc-
Q 012811 317 FSKERVEQAKEAINLLKK-----NPNVIFCGDMNWDD------KLDGKFPLPDGWVDAWTELRPGENGWTYDTKSNKML- 384 (456)
Q Consensus 317 ~~~~R~~Q~~~l~~~l~~-----~~pvIl~GDFN~~~------~~~~~~~l~~gl~D~~~~~~~~~~~~T~~~~~~~~~- 384 (456)
....|..|++.|.+++.+ ..|+|||||||..+ .+..+..+...+.+.+. ...+.++||+...|.+.
T Consensus 164 ~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~~s~~~~~l~~~~~~~~~--~~~g~~~T~~~~~n~~~~ 241 (306)
T 2ddr_A 164 PASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVP--SYTGHTATWDATTNSIAK 241 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCTTSHHHHHHHHHTBCCC--EEEECSCSBCTTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccccccCCHHHHHHHHhcCCCCc--ccCCCCcccCCCCCcccc
Confidence 346799999999998864 46999999999988 43333222222222221 12345788865433211
Q ss_pred -cCCCccCCCccEEEEecC
Q 012811 385 -SGNRTLQKRLDRFICSLR 402 (456)
Q Consensus 385 -~~~~~~~~rID~I~~s~~ 402 (456)
.....+..||||||+++.
T Consensus 242 ~t~~~~~~~rID~I~~s~~ 260 (306)
T 2ddr_A 242 YNFPDSPAEYLDYIIASKD 260 (306)
T ss_dssp HHCTTSCCBCCEEEEEBTT
T ss_pred ccCCCCCcceeeEEEEeCC
Confidence 001134689999999953
No 14
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.95 E-value=7.3e-28 Score=235.62 Aligned_cols=225 Identities=21% Similarity=0.212 Sum_probs=136.7
Q ss_pred CCCceEEEEEeccCCCCCChhhHHH-HHHHHHhhCCCcEEEEeccCHhH---HHHHHhCCCccce-EEecCCCCCCCCCe
Q 012811 182 VSGSLKILSYNVWFREDLEMHPRMK-TIGDLIQLHSPDIICFQEITPNI---YDILCKSSWWKGY-RCSVPNEMADSRGY 256 (456)
Q Consensus 182 ~~~~lrV~T~Nv~~~~~~~~~~r~~-~i~~~I~~~~pDII~LQEv~~~~---~~~L~~~~~~~~y-~~~~~~~~~~~~~~ 256 (456)
....||||||||++... ... .|+++|.+++||||||||+.... ...|... .+| +..+.......+.+
T Consensus 58 ~~~~lrv~t~Nv~g~~~-----~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~---~gy~~~~~~~~~~~~g~~ 129 (318)
T 1hd7_A 58 KPATLKICSWNVDGLRA-----WIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQEL---PGLSHQYWSAPSDKEGYS 129 (318)
T ss_dssp CBCCEEEEEEECSSHHH-----HHHTTHHHHHHHHCCSEEEEECCCCCC--------------CCCEEEEECC-----CC
T ss_pred CCCceEEEEEecCcchh-----hhhhhHHHHHHhhCCCEEEEEEccCchhhccHHHHhc---CCCceEEEecCCCCCccc
Confidence 34679999999997642 122 38999999999999999998432 2223332 233 22222111112335
Q ss_pred EEEEEEeeecceeeEeeCCC---CCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhh
Q 012811 257 FCMQLSKLQAKSFTCEPFRN---SIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLK 333 (456)
Q Consensus 257 g~ailSr~pi~~~~~~~~~~---~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~ 333 (456)
|++||||+|+..... .++. ...+| ++. +++ ..+.|+|+|+++..... .....|..|++.|.+++.
T Consensus 130 Gvailsr~~~~~~~~-~~~~~~~~~~~r-~l~--~~~---~~~~v~~vh~p~~~~~~-----~~~~~r~~~~~~l~~~l~ 197 (318)
T 1hd7_A 130 GVGLLSRQCPLKVSY-GIGDEEHDQEGR-VIV--AEF---DSFVLVTAYVPNAGRGL-----VRLEYRQRWDEAFRKFLK 197 (318)
T ss_dssp CEEEEESSCCSEEEE-SCSCGGGSSSSC-EEE--EEC---SSCEEEEEECCCCCGGG-----TTHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCceeEEe-cCCCcccCCCCc-EEE--EEc---CCEEEEEEEcCCCCCcc-----ccHHHHHHHHHHHHHHHH
Confidence 899999999765432 1211 12245 333 333 37999999997653211 112457778888877775
Q ss_pred c---CCCEEEEccCCCCCCCCC----------------------CcCCCCCcccccccccCCCC-CccccCCCCccccCC
Q 012811 334 K---NPNVIFCGDMNWDDKLDG----------------------KFPLPDGWVDAWTELRPGEN-GWTYDTKSNKMLSGN 387 (456)
Q Consensus 334 ~---~~pvIl~GDFN~~~~~~~----------------------~~~l~~gl~D~~~~~~~~~~-~~T~~~~~~~~~~~~ 387 (456)
. ..|+|||||||+.+.+.. ...+..+|.|+|+.+++... .|||+........
T Consensus 198 ~~~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~ll~~~l~D~~r~~~p~~~~~~T~~~~~~~~~~-- 275 (318)
T 1hd7_A 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARS-- 275 (318)
T ss_dssp HHHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGGGHHH--
T ss_pred hcccCCCEEEEeeCCCCChhhhccChhhcCCCCCcCHHHHHHHHHHHhhCCCEEeehhhCCCCCCCcceECCcCCCcc--
Confidence 4 478999999998754311 11124589999998876544 5999765321100
Q ss_pred CccCCCccEEEEecCCCc--cceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEe
Q 012811 388 RTLQKRLDRFICSLRDFK--IIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISN 453 (456)
Q Consensus 388 ~~~~~rID~I~~s~~~~~--~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~ 453 (456)
.....||||||++. .+. +....+.. ....|||+||+++|.+
T Consensus 276 ~~~~~rID~il~s~-~~~~~v~~~~v~~------------------------~~~~SDH~Pv~~~l~l 318 (318)
T 1hd7_A 276 KNVGWRLDYFLLSH-SLLPALCDSKIRS------------------------KALGSDHCPITLYLAL 318 (318)
T ss_dssp HTCCBCCEEEEECG-GGGGGEEEEEECT------------------------TCCSSSBCCEEEEECC
T ss_pred cCCceEEEEEEECH-HHHhhhhheEeec------------------------cCCCCCccCEEEEecC
Confidence 12357999999995 444 44555520 1237999999999964
No 15
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.94 E-value=4.3e-26 Score=232.40 Aligned_cols=235 Identities=17% Similarity=0.204 Sum_probs=141.1
Q ss_pred CCceEEEEEeccCCCCCChhhH-HHHHHHHHhhCCCcEEEEeccCHh--HHHHHHhCCCccceEEecCCCCCCCCCeEEE
Q 012811 183 SGSLKILSYNVWFREDLEMHPR-MKTIGDLIQLHSPDIICFQEITPN--IYDILCKSSWWKGYRCSVPNEMADSRGYFCM 259 (456)
Q Consensus 183 ~~~lrV~T~Nv~~~~~~~~~~r-~~~i~~~I~~~~pDII~LQEv~~~--~~~~L~~~~~~~~y~~~~~~~~~~~~~~g~a 259 (456)
...||||||||++... +..+ ...|+++|.+++||||||||+... ............+|++.+.......+.+|++
T Consensus 147 ~~~LKI~TwNVnGl~~--~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~~~~~~~~~~~g~~GVA 224 (467)
T 2j63_A 147 SRMYKFITWNVAGLRG--LLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCAFKRGYSGTR 224 (467)
T ss_dssp TTEEEEEEEECSCHHH--HHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECCSSSTTSCCEE
T ss_pred CCCeEEEEEEcCCCcc--cccccHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCceEEEecccCCCCcceEE
Confidence 4679999999998642 1111 157999999999999999999732 2221111110234544333221223446899
Q ss_pred EEEeeecc-----eeeE--eeCC------------------CCCCCCceEEEEEEeCCc------ceEEEEEeccCCCCC
Q 012811 260 QLSKLQAK-----SFTC--EPFR------------------NSIMGRELCVAEVEVQGK------KPLVVATSHLESPCP 308 (456)
Q Consensus 260 ilSr~pi~-----~~~~--~~~~------------------~~~~~R~~~~~~i~~~~g------~~l~v~n~Hl~~~~~ 308 (456)
||+|+|+. .... +.++ ....+| ++.+++.+. | ..|.|+|+|+++...
T Consensus 225 IlsR~pi~~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~~~~~D~egR-~I~a~~~~~-g~~~~~~~~~~vinvYlP~~~~ 302 (467)
T 2j63_A 225 TYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGR-VLTTFLSPD-PDSASSSSRIALVNTYVANSGM 302 (467)
T ss_dssp EEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCC-EEEEEECSS-CCC----CCEEEEEEECCCCCT
T ss_pred EEEeCCccccccceeeeeccccccccccccccccccccccccCCCCc-EEEEEEEeC-CcccccCceEEEEEEECCCCCc
Confidence 99999984 1111 1111 112345 455677665 4 689999999988753
Q ss_pred CCCccccccHHHHH----HHHHHHHHHhh-------------------cCCCEEEEccCCCCCCCCCCc-----------
Q 012811 309 GPPTWDQMFSKERV----EQAKEAINLLK-------------------KNPNVIFCGDMNWDDKLDGKF----------- 354 (456)
Q Consensus 309 ~~~~~~~~~~~~R~----~Q~~~l~~~l~-------------------~~~pvIl~GDFN~~~~~~~~~----------- 354 (456)
.... ...|. .++...++.+. ...|+|||||||+.+.+....
T Consensus 303 ~~~r-----~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~~~~ 377 (467)
T 2j63_A 303 GLTR-----LPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSMQEC 377 (467)
T ss_dssp TSTT-----HHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHHTTS
T ss_pred chHH-----HHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhhcccc
Confidence 2211 12222 22222232222 246899999999866542211
Q ss_pred -------------CC-CCCcccccccccCCC-CCccccCCCCccccCCCccCCCccEEEEecCCCc--cceEEEeecccc
Q 012811 355 -------------PL-PDGWVDAWTELRPGE-NGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFK--IIRIDMIGVEAI 417 (456)
Q Consensus 355 -------------~l-~~gl~D~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~~~--~~~~~~~g~d~~ 417 (456)
.+ ..+|.|+|+.+++.. ..|||+....... ..+.+.||||||++. .+. +....+. .
T Consensus 378 ~gf~~~er~~~~~lL~~~gL~DafR~~~p~~~~~yTw~s~r~~~~--~~n~g~RIDyIlvS~-~l~~~v~~~~I~-~--- 450 (467)
T 2j63_A 378 SGFAPEERMSFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRINGR--PRNLGWRLDYFVVSS-RLASYVVDCFPM-P--- 450 (467)
T ss_dssp TTSCHHHHHHHHHHHHHTTEEEHHHHHCTTBCSCCSBCCTTTTTT--TTTCCBCCEEEEEEG-GGGGGEEEEEEC-T---
T ss_pred cccCHHHHHHHHHHHhhCCCEEehHhhCCCCCCCccccCCCCCcc--cCCCCceeEEEEEcH-HHHcceeEEEEC-C---
Confidence 02 258999999988753 4599876532211 123468999999995 444 4455542 0
Q ss_pred CCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEe
Q 012811 418 PGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISN 453 (456)
Q Consensus 418 p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~ 453 (456)
..++|||+||+++|.+
T Consensus 451 --------------------~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 451 --------------------TVMGSDHCPFQMWMRH 466 (467)
T ss_dssp --------------------TCCSSSBCCEEEEEEC
T ss_pred --------------------CCCCCCcccEEEEEEc
Confidence 1358999999999975
No 16
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.94 E-value=6.9e-27 Score=220.88 Aligned_cols=222 Identities=18% Similarity=0.210 Sum_probs=142.6
Q ss_pred eEEEEEeccCCCCCChhhHHH-HHHHHHhhCCCcEEEEeccCHhH---HHHHHhCCCccceEEecCCCCCCCCCeEEEEE
Q 012811 186 LKILSYNVWFREDLEMHPRMK-TIGDLIQLHSPDIICFQEITPNI---YDILCKSSWWKGYRCSVPNEMADSRGYFCMQL 261 (456)
Q Consensus 186 lrV~T~Nv~~~~~~~~~~r~~-~i~~~I~~~~pDII~LQEv~~~~---~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ail 261 (456)
||||||||++.. .+.. .|+++|++++||||||||+.... .+.+.. ..+|.+.+... ...+.+|++||
T Consensus 2 l~v~t~Ni~~~~-----~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~---~~gy~~~~~~~-~~~~~~G~ail 72 (259)
T 2jc5_A 2 LKIISANVNGIR-----SAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKN---PHGMHGHWHCA-EKRGYSGVAVY 72 (259)
T ss_dssp EEEEEEECSSHH-----HHHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHS---GGGCEEEEECC-SSTTCCCEEEE
T ss_pred cEEEEEeeccHH-----HHHHhHHHHHHHhcCCCEEEEEEecchhhccChhhcc---ccCCeEEEecc-CCCCcceEEEE
Confidence 899999998763 2333 39999999999999999998432 233433 23444333221 12334689999
Q ss_pred EeeecceeeEeeCCCC---CCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc----
Q 012811 262 SKLQAKSFTCEPFRNS---IMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK---- 334 (456)
Q Consensus 262 Sr~pi~~~~~~~~~~~---~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~---- 334 (456)
||+|+..... .++.. ..+| ++. +++ ..+.|+|+|+++.... ......|..|++.+.+++.+
T Consensus 73 sr~~~~~~~~-~~~~~~~~~~~r-~~~--~~~---~~~~v~~~h~~~~~~~-----~~r~~~~~~~~~~l~~~~~~~~~~ 140 (259)
T 2jc5_A 73 SKRKPDNVQI-GMGIEEFDREGR-FVR--CDF---GRLSVISLYLPSGSSA-----EERQQVKYRFLDAFYPMLEAMKNE 140 (259)
T ss_dssp ESSCCSEEEE-SCSCHHHHTTCC-EEE--EEE---TTEEEEEEECCCCTTC-----HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EecCceeEEe-CCCCCccCCCCe-EEE--EEc---CCEEEEEEeccCCCCC-----cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999876544 12211 1234 333 333 3799999999887531 11112334667777776653
Q ss_pred CCCEEEEccCCCCCCCCCC---------------------cCC-CCCcccccccccCCCCCccccCCCCccccCCCccCC
Q 012811 335 NPNVIFCGDMNWDDKLDGK---------------------FPL-PDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQK 392 (456)
Q Consensus 335 ~~pvIl~GDFN~~~~~~~~---------------------~~l-~~gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~ 392 (456)
..|+||+||||+.+.+... ..+ ..+|.|+|+..++.+.++||+........ .....
T Consensus 141 ~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~d~~~~~~~~~~~~T~~~~~~~~~~--~~~~~ 218 (259)
T 2jc5_A 141 GRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYA--KDVGW 218 (259)
T ss_dssp CSEEEEEEECCCCCSGGGBSCSTTCTTSTTSCHHHHHHHHHHHHTTCCEEHHHHHCTTCCCCCEESCSSHHHH--TTCEE
T ss_pred CCCEEEEeeCCCCCchhhccChhhcCCCCCcCHHHHHHHHHHhccCCcEEeeHhhCCCCCCccEECCcCCCcc--CCCee
Confidence 6799999999997643110 012 56899999988877778999876321100 12347
Q ss_pred CccEEEEecCCCc--cceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEecc
Q 012811 393 RLDRFICSLRDFK--IIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNNI 455 (456)
Q Consensus 393 rID~I~~s~~~~~--~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~~~ 455 (456)
||||||+++ .+. +....+.. ...+|||+||+++|++.+
T Consensus 219 rID~i~~s~-~~~~~~~~~~v~~------------------------~~~~SDH~pv~~~l~~~~ 258 (259)
T 2jc5_A 219 RIDYQMVTP-ELAAKAVSAHVYK------------------------DEKFSDHAPLVVEYDYAA 258 (259)
T ss_dssp CCEEEEECH-HHHTTEEEEEECC------------------------SSCCSSBCCEEEEESCCC
T ss_pred EEEEEEECH-HHHhHHhheeecC------------------------CCCCCCcccEEEEEeccc
Confidence 999999994 343 45555531 135899999999998754
No 17
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.94 E-value=7.5e-27 Score=224.41 Aligned_cols=225 Identities=21% Similarity=0.215 Sum_probs=138.9
Q ss_pred CCCceEEEEEeccCCCCCChhhHHHH-HHHHHhhCCCcEEEEeccCHhH---HHHHHhCCCccce-EEecCCCCCCCCCe
Q 012811 182 VSGSLKILSYNVWFREDLEMHPRMKT-IGDLIQLHSPDIICFQEITPNI---YDILCKSSWWKGY-RCSVPNEMADSRGY 256 (456)
Q Consensus 182 ~~~~lrV~T~Nv~~~~~~~~~~r~~~-i~~~I~~~~pDII~LQEv~~~~---~~~L~~~~~~~~y-~~~~~~~~~~~~~~ 256 (456)
...+||||||||++.. .+... |+++|++++||||||||+.... ...|... .+| +..+.......+.+
T Consensus 25 ~~~~l~v~t~Ni~~~~-----~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~---~gy~~~~~~~~~~~~g~~ 96 (285)
T 2o3h_A 25 KPATLKIASWNVDGLR-----AWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQEL---PGLSHQYWSAPSDKEGYS 96 (285)
T ss_dssp CBCCEEEEEEECSSHH-----HHHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGC---GGGCEEEEECBC--CCSC
T ss_pred CccceEEEEEecccCh-----hhhhhhHHHHHHhcCCCEEEEEEeecchhhccHHHHhc---cCCcEEEEecccCCcccc
Confidence 3457999999998763 22233 8999999999999999998442 1123322 334 22222211112336
Q ss_pred EEEEEEeeecceeeEeeCCC---CCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhh
Q 012811 257 FCMQLSKLQAKSFTCEPFRN---SIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLK 333 (456)
Q Consensus 257 g~ailSr~pi~~~~~~~~~~---~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~ 333 (456)
|++||+|+|+..... .++. ...+| ++ .+++ ..+.|+|+|+++..... .....|..|++.|.++++
T Consensus 97 Gvailsr~~~~~~~~-~~~~~~~~~~~r-~l--~~~~---~~~~v~~~h~p~~~~~~-----~~~~~r~~~~~~l~~~l~ 164 (285)
T 2o3h_A 97 GVGLLSRQCPLKVSY-GIGDEEHDQEGR-VI--VAEF---DSFVLVTAYVPNAGRGL-----VRLEYRQRWDEAFRKFLK 164 (285)
T ss_dssp CEEEEESSCCSEEEE-SCSCGGGSSBCC-EE--EEEC---SSCEEEEEECCCCCGGG-----TTHHHHHHHHHHHHHHHH
T ss_pred eEEEEEccChHHeee-ccCCcccCCCCc-EE--EEEe---CCEEEEEEEcCCCCCcc-----hhHHHHHHHHHHHHHHHH
Confidence 899999999765432 1211 12244 22 2333 47999999997663211 112446778777777765
Q ss_pred c---CCCEEEEccCCCCCCCC------C----------------CcCCCCCcccccccccCCCC-CccccCCCCccccCC
Q 012811 334 K---NPNVIFCGDMNWDDKLD------G----------------KFPLPDGWVDAWTELRPGEN-GWTYDTKSNKMLSGN 387 (456)
Q Consensus 334 ~---~~pvIl~GDFN~~~~~~------~----------------~~~l~~gl~D~~~~~~~~~~-~~T~~~~~~~~~~~~ 387 (456)
. ..|+|||||||+.+... . ...+..+|.|+|+.+++... .+||.........
T Consensus 165 ~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~D~~~~~~~~~~~~~T~~~~~~~~~~-- 242 (285)
T 2o3h_A 165 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARS-- 242 (285)
T ss_dssp HHHTTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCCSCCSBCCSSTTHHH--
T ss_pred hhccCCCEEEEEECCCCCchhhccChhhcCCCCCcCHHHHHHHHHHHhcCCCEEEEEecCCCCCCcEeEecCcCCccc--
Confidence 4 57999999999754210 0 11123489999998876544 5999765321100
Q ss_pred CccCCCccEEEEecCCCc--cceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEe
Q 012811 388 RTLQKRLDRFICSLRDFK--IIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISN 453 (456)
Q Consensus 388 ~~~~~rID~I~~s~~~~~--~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~ 453 (456)
.....||||||++. .+. +...++.. ....|||+||+++|++
T Consensus 243 ~~~~~rID~i~~s~-~~~~~v~~~~v~~------------------------~~~~SDH~pv~~~l~l 285 (285)
T 2o3h_A 243 KNVGWRLDYFLLSH-SLLPALCDSKIRS------------------------KALGSDHCPITLYLAL 285 (285)
T ss_dssp HTCCBCCEEEEECG-GGGGGEEEEEECT------------------------TCCSSSBCCEEEEECC
T ss_pred cCceeEEEEEEECH-HHHhhhhheEeec------------------------cCCCCCeecEEEEecC
Confidence 12357999999994 444 45555521 1247999999999964
No 18
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.94 E-value=5.4e-26 Score=211.80 Aligned_cols=211 Identities=15% Similarity=0.167 Sum_probs=138.6
Q ss_pred CceEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhH--HHHHHhCCCccceEEecCCCCCCCCCeEEEEE
Q 012811 184 GSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNI--YDILCKSSWWKGYRCSVPNEMADSRGYFCMQL 261 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~--~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ail 261 (456)
.+|||+||||++... ..|...+.++|++++||||||||+.... ...+. .. .+.|.+..... .+.+|++||
T Consensus 6 ~~lri~t~Nv~g~~~---~~~~~~~~~~i~~~~~DIv~LQE~~~~~~~~~~l~-~~-~y~~~~~~~~~---~~~~Gvail 77 (238)
T 1vyb_A 6 SHITILTLNINGLNS---AIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLK-IK-GWRKIYQANGK---QKKAGVAIL 77 (238)
T ss_dssp CCEEEEEEECSCCCS---HHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCC-CT-TCCEEEEECCS---SSSCCEEEE
T ss_pred CcceEEEEecccCCc---hhhHHHHHHHHHHcCCCEEEEecccCCCCCchhHh-hC-CCCeEEEccCC---CCCceEEEE
Confidence 579999999987642 4566889999999999999999997321 11121 11 12222212111 234689999
Q ss_pred Eeeecc-eeeEeeCCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc--CCCE
Q 012811 262 SKLQAK-SFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK--NPNV 338 (456)
Q Consensus 262 Sr~pi~-~~~~~~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~--~~pv 338 (456)
+|.++. ........ ..+| .+.+++.++ +..+.|+++|+++.. .. .+++.+.+.+.+ ..|+
T Consensus 78 ~r~~~~~~~~~~~~~--~~~r-~i~~~~~~~-~~~~~v~~~y~p~~~-----------~~--~~~~~l~~~l~~~~~~~~ 140 (238)
T 1vyb_A 78 VSDKTDFKPTKIKRD--KEGH-YIMVKGSIQ-QEELTILNIYAPNTG-----------AP--RFIKQVLSDLQRDLDSHT 140 (238)
T ss_dssp ECTTCCCEEEEEEEC--TTSS-EEEEEEEET-TEEEEEEEEECCSSS-----------HH--HHHHHHHHHTTTTCCTTE
T ss_pred EeCCCCccccceeEc--CCCc-EEEEEEEeC-CCcEEEEEEecCCCC-----------cH--HHHHHHHHHHHhccCCCE
Confidence 997632 22222221 2244 456778876 689999999998762 11 245566777765 5799
Q ss_pred EEEccCCCCCCCCCCc--------------CC-CCCcccccccccCCCCCccccCCCCccccCCCccCCCccEEEEecCC
Q 012811 339 IFCGDMNWDDKLDGKF--------------PL-PDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRD 403 (456)
Q Consensus 339 Il~GDFN~~~~~~~~~--------------~l-~~gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~ 403 (456)
||+||||+.+.+.... .+ ..+|.|+|+..+|.+.++||..... ....||||||+++ .
T Consensus 141 Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~T~~~~~~-------~~~~rID~i~~s~-~ 212 (238)
T 1vyb_A 141 LIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPH-------HTYSKIDHIVGSK-A 212 (238)
T ss_dssp EEEEECSSCSSGGGBTTCCCCCHHHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETTT-------TEEECCEEEEEEG-G
T ss_pred EEEccCCCCCCccccCCCCCCcHHHHHHHHHHhhCCCEEhhHhhCCCCCceeEEcCCC-------CcccceEEEEeCH-H
Confidence 9999999876532110 01 3489999998877777899976522 2346999999995 4
Q ss_pred Cc--cceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEE
Q 012811 404 FK--IIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTIS 452 (456)
Q Consensus 404 ~~--~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~ 452 (456)
+. +...++. ...+|||+||+++|+
T Consensus 213 ~~~~~~~~~v~-------------------------~~~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 213 LLSKCKRTEII-------------------------TNYLSDHSAIKLELR 238 (238)
T ss_dssp GGGGEEEEEEE-------------------------CCSSSSSCEEEEEEC
T ss_pred HHhhhhhceee-------------------------cCCCCCcccEEEEeC
Confidence 43 4455553 124899999999984
No 19
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.94 E-value=7.1e-27 Score=220.82 Aligned_cols=222 Identities=19% Similarity=0.218 Sum_probs=140.7
Q ss_pred eEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHh---H-HHHHHhCCCccceEEecCCCCCCCCCeEEEEE
Q 012811 186 LKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPN---I-YDILCKSSWWKGYRCSVPNEMADSRGYFCMQL 261 (456)
Q Consensus 186 lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~---~-~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ail 261 (456)
|||+||||++.. .+...|+++|++++||||||||+... . ...+.. .+|.+.+.. ..+.+|++||
T Consensus 2 lrv~t~Nv~g~~-----~~~~~i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~~----~gy~~~~~~---~~~~~G~ail 69 (257)
T 2voa_A 2 LKIATFNVNSIR-----SRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHR----IGYHVVFSG---SKGRNGVAIA 69 (257)
T ss_dssp EEEEEEECSCGG-----GTHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHT----TTCEEEEEE---ETTEEEEEEE
T ss_pred eEEEEEecCChH-----HHHHHHHHHHhhcCCCEEEEEEeecchhhcCHHHhhh----CCCcEEEcC---CCCccEEEEE
Confidence 899999998653 45678999999999999999999732 1 223332 234332221 1234689999
Q ss_pred EeeecceeeEeeCCCC--CCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhh----cC
Q 012811 262 SKLQAKSFTCEPFRNS--IMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLK----KN 335 (456)
Q Consensus 262 Sr~pi~~~~~~~~~~~--~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~----~~ 335 (456)
||+|+..... .++.. ..+| ++.+ +++ .+.|+|+|+++....+. .....|..+++.|.++++ ..
T Consensus 70 sr~~~~~~~~-~~~~~~~~~~r-~l~~--~~~---~~~v~~~h~p~~~~~~~----~~~~~r~~~~~~l~~~~~~~~~~~ 138 (257)
T 2voa_A 70 SLEEPEDVSF-GLDSEPKDEDR-LIRA--KIA---GIDVINTYVPQGFKIDS----EKYQYKLQWLERLYHYLQKTVDFR 138 (257)
T ss_dssp ESSCCEEEEE-SCSSSSCCGGG-EEEE--EET---TEEEEEEECCCCSCTTS----HHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred EccChHHhee-cCCCCccccCc-EEEE--EEC---CEEEEEEEeCCCCCCCc----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999875432 23321 1345 4444 343 79999999987643110 112335566777777665 36
Q ss_pred CCEEEEccCCCCCCCCCC---------------------cCCCCCcccccccccCCCCCccccCC-CCccccCCCccCCC
Q 012811 336 PNVIFCGDMNWDDKLDGK---------------------FPLPDGWVDAWTELRPGENGWTYDTK-SNKMLSGNRTLQKR 393 (456)
Q Consensus 336 ~pvIl~GDFN~~~~~~~~---------------------~~l~~gl~D~~~~~~~~~~~~T~~~~-~~~~~~~~~~~~~r 393 (456)
.|+|||||||+.+.+... ..+..+|.|+|+..+|....+||+.. ..... ......|
T Consensus 139 ~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~~~~p~~~~~T~~~~~~~~~~--~~~~~~r 216 (257)
T 2voa_A 139 SFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGAI--ERGLGWR 216 (257)
T ss_dssp SCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHHHHHHHHHHHTTTCEEHHHHHSTTCCCCSBCCTTSTTTT--TTTCCBC
T ss_pred CCEEEEeeCCCCCchhhccChhHhCCCCCCCHHHHHHHHHHHHcCcEeeehhhCCCCCCcceeccccCCce--ecCceEE
Confidence 799999999987643210 01245799999988776678998765 22111 1134579
Q ss_pred ccEEEEecCCCc--cceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEe
Q 012811 394 LDRFICSLRDFK--IIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISN 453 (456)
Q Consensus 394 ID~I~~s~~~~~--~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~ 453 (456)
|||||+++ .+. +....+... . + ....+|||+||+++|++
T Consensus 217 ID~i~~s~-~~~~~~~~~~v~~~-~------------~-------~~~~~SDH~pv~~~l~~ 257 (257)
T 2voa_A 217 GDAILATP-PLAERCVDCYADIK-P------------R-------LAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp CEEEEECH-HHHTTEEEEEECCH-H------------H-------HSSSCCSBCCEEEEECC
T ss_pred EEEEEECH-HHHhhhheeEeehh-h------------c-------cCCCCCCccCEEEEEeC
Confidence 99999984 343 445554211 0 0 01358999999999864
No 20
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.94 E-value=5.3e-27 Score=233.97 Aligned_cols=246 Identities=20% Similarity=0.260 Sum_probs=154.1
Q ss_pred CCceEEEEEeccCCC-------------CCChhhHHHHHHHHHhhCCCcEEEEeccCHhHH-HHHHhCCCccceEEecCC
Q 012811 183 SGSLKILSYNVWFRE-------------DLEMHPRMKTIGDLIQLHSPDIICFQEITPNIY-DILCKSSWWKGYRCSVPN 248 (456)
Q Consensus 183 ~~~lrV~T~Nv~~~~-------------~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~-~~L~~~~~~~~y~~~~~~ 248 (456)
...||||||||+... ...|..|...|+++|..++|||||||||....+ +.+...+..++|...+..
T Consensus 29 ~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~ 108 (398)
T 3ngq_A 29 SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSP 108 (398)
T ss_dssp CEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEE
T ss_pred CCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHHhCCceEEEec
Confidence 457999999998642 235789999999999999999999999985432 222221112456554321
Q ss_pred CC--------CCCCCeEEEEE---EeeecceeeEeeCCCCC--------------CC--CceEEEEEEeC----------
Q 012811 249 EM--------ADSRGYFCMQL---SKLQAKSFTCEPFRNSI--------------MG--RELCVAEVEVQ---------- 291 (456)
Q Consensus 249 ~~--------~~~~~~g~ail---Sr~pi~~~~~~~~~~~~--------------~~--R~~~~~~i~~~---------- 291 (456)
.. +..++.|++|| +||.+.+...+.|.... +. ..++++.++..
T Consensus 109 k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~ 188 (398)
T 3ngq_A 109 KSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKP 188 (398)
T ss_dssp SCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC------
T ss_pred CCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccchhhhcceeeccceeEEEEEEEccccccccccc
Confidence 11 12356899999 45888888877663210 11 12244445432
Q ss_pred ----CcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc-----------------CCCEEEEccCCCCCCC
Q 012811 292 ----GKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK-----------------NPNVIFCGDMNWDDKL 350 (456)
Q Consensus 292 ----~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~-----------------~~pvIl~GDFN~~~~~ 350 (456)
.++.|.|+||||.+.. .....|..|+..|++.|++ ..|+|||||||..+.+
T Consensus 189 ~~~~~~~~l~V~nTHL~~~p--------~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s 260 (398)
T 3ngq_A 189 IHAADKQLLIVANAHMHWDP--------EYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDS 260 (398)
T ss_dssp -----CCEEEEEEEECCCCT--------TCHHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTTS
T ss_pred ccCCCCcEEEEEEeCcCCCC--------CCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCCC
Confidence 2567999999999862 2357899999988887753 2589999999999988
Q ss_pred CCCcCCCCCcccc----ccc---------c--------------cC---------CCCCccccCCCCccccCCCccCCCc
Q 012811 351 DGKFPLPDGWVDA----WTE---------L--------------RP---------GENGWTYDTKSNKMLSGNRTLQKRL 394 (456)
Q Consensus 351 ~~~~~l~~gl~D~----~~~---------~--------------~~---------~~~~~T~~~~~~~~~~~~~~~~~rI 394 (456)
..+..+..|..+. |.. . ++ .+..||-. ..++...|
T Consensus 261 ~vy~~L~~G~v~~~h~d~~~~~y~~~~~~~~~~~~~~~~~~~~~h~~~L~SAy~~~~~~fTny---------t~~F~g~l 331 (398)
T 3ngq_A 261 GVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNY---------TFDFKGVI 331 (398)
T ss_dssp HHHHHHHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEEETTTTTSSSCSEE---------CSSCEECC
T ss_pred HHHHHHhcCCCCCCChhhhhcccccccccccccccccccccccccCccccccccCCCCCceec---------cCCcCCce
Confidence 7665433222110 000 0 00 01122211 12456799
Q ss_pred cEEEEecCCCccceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEec
Q 012811 395 DRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 454 (456)
Q Consensus 395 D~I~~s~~~~~~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~~ 454 (456)
||||++...+++..+ ++. ++ ..++. ......++...+||||.+|+|+|++.
T Consensus 332 DYI~~s~~~l~v~~v--l~~--~~-~~~l~----~~~~~glP~~~~PSDHi~l~a~f~~~ 382 (398)
T 3ngq_A 332 DYIFYSKTHMNVEGV--LGP--LD-PQWLV----ENNITGCPHPHIPSDHFSLLTQLELH 382 (398)
T ss_dssp EEEEEETTTEEEEEE--ECC--CC-HHHHH----HTTCCSSCBTTBCSSBCCEEEEEEEC
T ss_pred eEEEEeCCceEEEee--cCC--CC-HHHhc----cccccCCCCCCCCCcchheeEEEEEc
Confidence 999999656665543 221 11 01111 11234567789999999999999975
No 21
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.93 E-value=4.3e-25 Score=210.00 Aligned_cols=223 Identities=22% Similarity=0.277 Sum_probs=142.0
Q ss_pred CceEEEEEeccCCCCCChhhHHH-HHHHHHhhCCCcEEEEeccCHh---HHHHHHhCCCccceEEecCCCCCCCCCeEEE
Q 012811 184 GSLKILSYNVWFREDLEMHPRMK-TIGDLIQLHSPDIICFQEITPN---IYDILCKSSWWKGYRCSVPNEMADSRGYFCM 259 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~~~~~~r~~-~i~~~I~~~~pDII~LQEv~~~---~~~~L~~~~~~~~y~~~~~~~~~~~~~~g~a 259 (456)
..|||+||||++.+ .+.. .+.++|++.+||||||||+... ....+... .+|...+... ...+..|++
T Consensus 2 ~~l~i~s~Nv~g~~-----~~~~~~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~---~gy~~~~~~~-~~~~~~Gva 72 (265)
T 3g91_A 2 AVLKIISWNVNGLR-----AVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHV---EGYRSFFTPA-ERKGYSGVA 72 (265)
T ss_dssp CEEEEEEEECSCHH-----HHHHHTHHHHHHHHCCSEEEEECCCSCGGGSCHHHHCC---TTCEEEEECB-SSTTSCCEE
T ss_pred CccEEEEEEcCCch-----hhhhhhHHHHHHhcCCCEEEEEeccccccccChhhhcc---cCCcEEEccC-CCCCcCEEE
Confidence 36999999998764 2222 5899999999999999999733 22233322 3444333222 123346899
Q ss_pred EEEeeecceeeEeeCCC---CCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc--
Q 012811 260 QLSKLQAKSFTCEPFRN---SIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK-- 334 (456)
Q Consensus 260 ilSr~pi~~~~~~~~~~---~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~-- 334 (456)
||+|.++...... +.. ...+|.+ . ++. ..+.|+++|++..... ......|..+++.+.+++..
T Consensus 73 il~k~~~~~~~~~-~~~~~~d~~gr~i-~--~~~---~~~~i~~vy~p~~~~~-----~~~~~~r~~~~~~l~~~~~~~~ 140 (265)
T 3g91_A 73 MYTKVPPSSLREG-FGVERFDTEGRIQ-I--ADF---DDFLLYNIYFPNGAMS-----EERLKYKLEFYDAFLEDVNRER 140 (265)
T ss_dssp EEESSCCSEEECC-CSCHHHHSBSCEE-E--EEC---SSCEEEEEECCCCTTC-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChHHhccC-CCCcccCCcCCEE-E--EEe---CCEEEEEEEecCCCCC-----chhHHHHHHHHHHHHHHHHHHH
Confidence 9999987654321 111 1123332 2 233 3799999999877532 11123466677777766654
Q ss_pred --CCCEEEEccCCCCCCCCCCc---------------------CCCCCcccccccccCCCCCccccCCCCccccCCCccC
Q 012811 335 --NPNVIFCGDMNWDDKLDGKF---------------------PLPDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQ 391 (456)
Q Consensus 335 --~~pvIl~GDFN~~~~~~~~~---------------------~l~~gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~ 391 (456)
+.++|||||||..+.+.... .+..||.|+|+..+|....|||........ ....+
T Consensus 141 ~~~~~~ii~GDfN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~D~~r~~~p~~~~yT~~~~~~~~~--~~~~~ 218 (265)
T 3g91_A 141 DSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWSYRTRAR--ERNVG 218 (265)
T ss_dssp HTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHHHHHHHHHHHTTEEETHHHHCCCSCCCSBCCSSTTTT--TTTCC
T ss_pred cCCCCEEEECccccCCchhhccCHhhcCCCCccCHHHHHHHHHHHhcCcEEeeHhhCCCCCCCCCcCCCCCcc--ccCce
Confidence 58999999999876531100 024589999999988888999986643211 12345
Q ss_pred CCccEEEEecCCC--ccceEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEec
Q 012811 392 KRLDRFICSLRDF--KIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 454 (456)
Q Consensus 392 ~rID~I~~s~~~~--~~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~~ 454 (456)
.||||||++. .+ .+....+. . ...+|||+||+++|...
T Consensus 219 ~rID~il~s~-~~~~~~~~~~i~-~-----------------------~~~~SDH~Pv~~~~~~~ 258 (265)
T 3g91_A 219 WRLDYFFVNE-EFKGKVKRSWIL-S-----------------------DVMGSDHCPIGLEIELL 258 (265)
T ss_dssp BCCEEEEEEG-GGGGGEEEEEEC-T-----------------------TCCSSSBCCEEEEEECC
T ss_pred EEEEEEEECH-HHHhhhcEEEEe-C-----------------------CCCCCCcceEEEEhhhh
Confidence 7999999995 44 34455542 0 12479999999999753
No 22
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.91 E-value=2.5e-23 Score=195.51 Aligned_cols=215 Identities=16% Similarity=0.143 Sum_probs=130.2
Q ss_pred CceEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhHHHHHHhCCCccceEEecCCCCCCCCCeEEEEEEe
Q 012811 184 GSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQLSK 263 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ailSr 263 (456)
..||||||||++.. .+...++++|.+.+||||||||+.......+.. ..+|.+..... ...+.+|++||+|
T Consensus 18 ~~lri~s~Nv~~~~-----~~~~~l~~~i~~~~~DIv~lQE~~~~~~~~~~~---~~gy~~~~~~~-~~~~~~GvaIl~~ 88 (245)
T 1wdu_A 18 PPYRVLQANLQRKK-----LATAELAIEAATRKAAIALIQEPYVGGAKSMKG---FRGVRVFQSTA-QGDGTVKAAIAVF 88 (245)
T ss_dssp CCEEEEEEECTTCH-----HHHHHHHHHHHHHTCSEEEEESCCC------CC---CSSCEEEECCC-CTTCCCCEEEEEC
T ss_pred cceeeeeeeccccH-----HHHHHHHHHHhhcCCCEEEEEcccccCCccccC---CCcceEecccc-ccCCCCCeEEEEE
Confidence 46999999999763 467789999999999999999998554333322 24565443221 1223467999984
Q ss_pred e-ecceeeEeeCCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhcCCCEEEEc
Q 012811 264 L-QAKSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPNVIFCG 342 (456)
Q Consensus 264 ~-pi~~~~~~~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~~~pvIl~G 342 (456)
. ++. .. .++.. ..+..+.+.++.. +..+.|+|+|++.... ...+..++..+.+.+ ...++||||
T Consensus 89 ~~~~~-~~--~~~~~-~~~~~~~~~i~~~-~~~~~v~~vy~p~~~~---------~~~~~~~l~~~~~~~-~~~~~Ii~G 153 (245)
T 1wdu_A 89 DHDLD-VI--QYPQL-TTNNIVVVGIRTR-AWEITLVSYYFEPDKP---------IESYLEQIKRVERKM-GPKRLIFGG 153 (245)
T ss_dssp CSSCE-EE--ECTTT-CCSSEEEEEEECS-SCEEEEEEEECCTTSC---------SHHHHHHHHHHHHTT-CSSSEEEEE
T ss_pred CCCcc-eE--Eeccc-ccCCEEEEEEEcC-CCcEEEEEEEeCCCCC---------HHHHHHHHHHHHHHh-CCCcEEEEe
Confidence 2 331 11 22211 2466778888887 6799999999987632 133555666665544 357899999
Q ss_pred cCCCCCCCCCCcCCC---CCccccc-----ccccCCCCCccccCCCCccccCCCccCCCccEEEEecCCC--ccceEEEe
Q 012811 343 DMNWDDKLDGKFPLP---DGWVDAW-----TELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDF--KIIRIDMI 412 (456)
Q Consensus 343 DFN~~~~~~~~~~l~---~gl~D~~-----~~~~~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~~--~~~~~~~~ 412 (456)
|||+.+..-...... ..|.+.. ..+++ +..+||...... .....||||||++. .+ .+....+.
T Consensus 154 DfN~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~T~~~~~~~-----~~~~~rID~i~~s~-~~~~~v~~~~v~ 226 (245)
T 1wdu_A 154 DANAKSTWWGSKEDDARGDQLMGTLGELGLHILNE-GDVPTFDTIRGG-----KRYQSRVDVTFCTE-DMLDLIDGWRVD 226 (245)
T ss_dssp ECCCCCGGGTCSSCCHHHHHHHHHHHHHTCEECCC-SCCCSEEC----------CCEECCEEEEECG-GGBTTEEEEEEC
T ss_pred ccccCcccCCCCCcCcchHHHHHHHHHCCcEEecC-CCCCcEECCCCC-----CCCCCEEEEEEeCh-HHHhhccceEEc
Confidence 999875321111000 0122221 22222 345888765221 12358999999995 34 34555552
Q ss_pred eccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEe
Q 012811 413 GVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISN 453 (456)
Q Consensus 413 g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~ 453 (456)
. ...+|||+||+++|++
T Consensus 227 -~-----------------------~~~~SDH~Pv~~~l~l 243 (245)
T 1wdu_A 227 -E-----------------------DLVSSDHNGMVFNIRL 243 (245)
T ss_dssp -T-----------------------TSSSSSBCCEEEEECC
T ss_pred -C-----------------------CCCCCCcccEEEEEEe
Confidence 0 1368999999999976
No 23
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.90 E-value=2.3e-25 Score=240.97 Aligned_cols=243 Identities=17% Similarity=0.200 Sum_probs=56.3
Q ss_pred CCceEEEEEeccCCC---C----------CChhhHHHHHHHHHhhCCCcEEEEeccCHhHH-HHHHhCCCccceEEecCC
Q 012811 183 SGSLKILSYNVWFRE---D----------LEMHPRMKTIGDLIQLHSPDIICFQEITPNIY-DILCKSSWWKGYRCSVPN 248 (456)
Q Consensus 183 ~~~lrV~T~Nv~~~~---~----------~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~-~~L~~~~~~~~y~~~~~~ 248 (456)
...+++++||+.... . ..|..|...|++.|..++|||||||||..... +.+...+..++|...+..
T Consensus 392 ~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~ 471 (727)
T 4b8c_D 392 KRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHA 471 (727)
T ss_dssp ----------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC--
T ss_pred ccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEec
Confidence 357899999998621 1 15888999999999999999999999996543 332332222445443321
Q ss_pred C--------CCCCCCeEEEEE---EeeecceeeEeeCCCCC------------C------CCceEEEEEEe-CCcceEEE
Q 012811 249 E--------MADSRGYFCMQL---SKLQAKSFTCEPFRNSI------------M------GRELCVAEVEV-QGKKPLVV 298 (456)
Q Consensus 249 ~--------~~~~~~~g~ail---Sr~pi~~~~~~~~~~~~------------~------~R~~~~~~i~~-~~g~~l~v 298 (456)
. .....+.|++|| +||++.+...+.|.... + .|.++++.++. ..|+.|.|
T Consensus 472 ~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~l~~~~~g~~l~V 551 (727)
T 4b8c_D 472 KARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIPSGDTIWA 551 (727)
T ss_dssp --------------CCCCEEEC----------------------------------------------------------
T ss_pred cCCcccccccCCCCcccEEEEEEcccceEeeeeEEeechhhhhchhhcccHHHHhhcccCCcEEEEEEEeecCCCceEEE
Confidence 1 112356789999 89999887766653211 1 13455555543 24789999
Q ss_pred EEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhc---------------CCCEEEEccCCCCCCCCCCcCCCCCc---
Q 012811 299 ATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKK---------------NPNVIFCGDMNWDDKLDGKFPLPDGW--- 360 (456)
Q Consensus 299 ~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~---------------~~pvIl~GDFN~~~~~~~~~~l~~gl--- 360 (456)
+|+|+.+... ....|..|+..+.+++.+ ..|+|||||||+.+.+..+..+..+.
T Consensus 552 ~ntHL~~~p~--------~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~~~~~l~~~~v~~ 623 (727)
T 4b8c_D 552 VTTHLHWDPK--------FNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTGRVQI 623 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeccccCCC--------CCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCCcceEeeecCCcCc
Confidence 9999988532 235688888877777643 34899999999999887776554332
Q ss_pred -----------------------ccccccccCCCCCccccCCCCccccCCCccCCCccEEEEecCCCccceEEEeecccc
Q 012811 361 -----------------------VDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAI 417 (456)
Q Consensus 361 -----------------------~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~~~~~~~~~~g~d~~ 417 (456)
.++|... ++..||..+ .+...+|||||+++..+.+.....+
T Consensus 624 ~~d~~~~~~~~~~~~~~~~~~~l~say~~~--~~~~~T~~~---------~~~~~~LDyI~~S~~~l~~~~~~~~----- 687 (727)
T 4b8c_D 624 HQEGNGRDFGYMSEKNFSHNLALKSSYNCI--GELPFTNFT---------PSFTDVIDYIWFSTHALRVRGLLGE----- 687 (727)
T ss_dssp ----------------------------------CCCSBCC---------SSCCBCC-----------------C-----
T ss_pred chhhccccccccccccccccccccchhhcC--CCCcccccc---------CccCCeeeeEEEcCCceeEeeccCC-----
Confidence 2222211 122233222 1345679999999644443322110
Q ss_pred CCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEecc
Q 012811 418 PGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNNI 455 (456)
Q Consensus 418 p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~~~ 455 (456)
+...+ . .....++...++|||+||+++|++..
T Consensus 688 ~~~~~-----~-~~~~~~P~~~~pSDH~pV~a~f~l~~ 719 (727)
T 4b8c_D 688 VDPEY-----V-SKFIGFPNDKFPSDHIPLLARFEFMK 719 (727)
T ss_dssp CCHHH-----H-TTCSSSSBTTBCSSBCC---------
T ss_pred CCHHH-----h-cccCCCCCCCCCCCceeEEEEEEEec
Confidence 00000 0 11122355678999999999998753
No 24
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.87 E-value=6.9e-22 Score=185.16 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=127.1
Q ss_pred ceEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcEEEEeccCHhHHHHHHhCCCccceEEecCCCCCCCCCeEEEEEEee
Q 012811 185 SLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQLSKL 264 (456)
Q Consensus 185 ~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDII~LQEv~~~~~~~L~~~~~~~~y~~~~~~~~~~~~~~g~ailSr~ 264 (456)
.|||+||||++.. .+...+.++|++.+||||||||+... .+|+ ... .+.+|++|+++.
T Consensus 7 ~mki~s~Nvn~~r-----~~~~~l~~~l~~~~~DIl~LQEt~~~-----------~gy~-~~~-----~~~~gvail~~~ 64 (240)
T 2ei9_A 7 RLRIGQINLGGAE-----DATRELPSIARDLGLDIVLVQEQYSM-----------VGFL-AQC-----GAHPKAGVYIRN 64 (240)
T ss_dssp EEEEEEEECTTCH-----HHHHTHHHHHHHHTCSEEEEESCCTT-----------SSSE-ECC-----SSSCSEEEEESS
T ss_pred cceEEEEecCccH-----HHHHHHHHHHHHcCCCEEEeecceEc-----------CCce-Eec-----cCCCCEEEEEec
Confidence 5999999999874 56677999999999999999999621 2444 221 235678998886
Q ss_pred ecceeeEeeCCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHHHHhhcCCCEEEEccC
Q 012811 265 QAKSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPNVIFCGDM 344 (456)
Q Consensus 265 pi~~~~~~~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~~~l~~~~pvIl~GDF 344 (456)
+......+.... .+....+.++. ..+.|+|+|++.... ...+..+++.+...+. ..++||||||
T Consensus 65 ~~~~~~~~~~~~---~~~~~~i~i~~---~~i~i~svY~P~~~~---------~~~~~~~l~~l~~~~~-~~~~Ii~GDf 128 (240)
T 2ei9_A 65 RVLPCAVLHHLS---STHITVVHIGG---WDLYMVSAYFQYSDP---------IDPYLHRLGNILDRLR-GARVVICADT 128 (240)
T ss_dssp TTSCEEECGGGC---CSSEEEEEETT---TTEEEEEEECCTTSC---------SHHHHHHHHHHHHHTT-TSCEEEEEEC
T ss_pred CCcceeeecccC---CCCEEEEEEee---ccEEEEEEEcCCCCc---------hhHHHHHHHHHHHhcC-CCcEEEEEec
Confidence 433332221111 13444444432 479999999988743 2446667777766554 4789999999
Q ss_pred CCCCCCCCCcC---------------CCCCccccccc--ccCCCCCccccCCCCccccCCCccCCCccEEEEecCCCccc
Q 012811 345 NWDDKLDGKFP---------------LPDGWVDAWTE--LRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKII 407 (456)
Q Consensus 345 N~~~~~~~~~~---------------l~~gl~D~~~~--~~~~~~~~T~~~~~~~~~~~~~~~~~rID~I~~s~~~~~~~ 407 (456)
|+.+..-.... .-.+|.|.++. +++.+..|||.... ..+||||||++. .+...
T Consensus 129 N~~~~~w~~~~~~~~~~~~~r~~~~~~l~~~~d~~~l~~~~~~~~~~T~~s~~---------~~~rID~~l~s~-~l~~~ 198 (240)
T 2ei9_A 129 NAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGARRLVVHNADGHLPTFSTAN---------GESYVDVTLSTR-GVRVS 198 (240)
T ss_dssp CCCCGGGTCCHHHHSSSCHHHHHHHHHHHHHHHHTTCEECCCTTCCCSEEETT---------EEECCEEEEECT-TCCEE
T ss_pred ccccccccCCCCCCCCcchhhHHHHHHHHHHHHhcCCEecCCCCCCceEeCCC---------CceEEEEEEecC-ccccC
Confidence 98753211000 00256777773 35545579998652 248999999995 34333
Q ss_pred eEEEeeccccCCchhhhhhhhhhhhhccCCCCCccCCcceeEEEEec
Q 012811 408 RIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 454 (456)
Q Consensus 408 ~~~~~g~d~~p~~~~~~~~~~~~~~~~~~~~~~~SDH~pV~~~~~~~ 454 (456)
...+. ...+|||+||+++|...
T Consensus 199 ~~~i~-------------------------~~~~SDH~Pv~~~l~~~ 220 (240)
T 2ei9_A 199 EWRVT-------------------------NESSSDHRLIVFGVGGG 220 (240)
T ss_dssp EEEEC-------------------------SCCSSSBCCEEEEEEC-
T ss_pred CeEEC-------------------------CCCCCCcccEEEEECCC
Confidence 33331 12589999999999764
No 25
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.86 E-value=2.3e-21 Score=183.90 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=88.1
Q ss_pred eEEEEEeccCCCCCChhhHHHHHHHHHhhC--CCcEEEEeccCHh---HHH----HHHhCCCccceEEecCCCCC-CCCC
Q 012811 186 LKILSYNVWFREDLEMHPRMKTIGDLIQLH--SPDIICFQEITPN---IYD----ILCKSSWWKGYRCSVPNEMA-DSRG 255 (456)
Q Consensus 186 lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~--~pDII~LQEv~~~---~~~----~L~~~~~~~~y~~~~~~~~~-~~~~ 255 (456)
|||+||||+++... ..+...+++.|.+. +||||+||||... ... .|.... ...|.+......+ ...+
T Consensus 1 lrv~s~NI~~~g~~--~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~-~~~y~~v~~~~~~~~~~~ 77 (260)
T 2a40_B 1 LKIAAFNIRTFGET--KMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDD-PNTYHYVVSEPLGRNSYK 77 (260)
T ss_dssp CEEEEEEEEEESHH--HHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSS-TTSCEEEECCCBCSSSCC
T ss_pred CEEEEEehhhhCCC--ccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhcc-CCCcEEEEcccCCCCCCc
Confidence 79999999986321 12333444444442 8999999999853 122 332221 1335554333222 1234
Q ss_pred eEEEEEEeeecce-eeEeeCCCC-------CCCCceEEEEEEeCC--cceEEEEEeccCCCCCCCCccccccHHHHHHHH
Q 012811 256 YFCMQLSKLQAKS-FTCEPFRNS-------IMGRELCVAEVEVQG--KKPLVVATSHLESPCPGPPTWDQMFSKERVEQA 325 (456)
Q Consensus 256 ~g~ailSr~pi~~-~~~~~~~~~-------~~~R~~~~~~i~~~~--g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~ 325 (456)
..++++.|.+... .....++.. .+.|..+.+.++..+ |..|.|+++||.+.. ...+..++
T Consensus 78 ~~~~~ly~~~~v~~~~~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~----------~~~q~~~l 147 (260)
T 2a40_B 78 ERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSD----------AVAEINSL 147 (260)
T ss_dssp BEEEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGG----------HHHHHHHH
T ss_pred EEEEEEEcCceeEecCceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCCCCC----------cHHHHHHH
Confidence 5678887744222 222233321 135888888888764 789999999999752 12223333
Q ss_pred HHHHHHhh---cCCCEEEEccCCCCCC
Q 012811 326 KEAINLLK---KNPNVIFCGDMNWDDK 349 (456)
Q Consensus 326 ~~l~~~l~---~~~pvIl~GDFN~~~~ 349 (456)
..+.+.+. ...|+|||||||..+.
T Consensus 148 ~~~~~~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 148 YDVYLDVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECCCSTT
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCCc
Confidence 33333332 2579999999998776
No 26
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.86 E-value=9.9e-22 Score=180.23 Aligned_cols=188 Identities=15% Similarity=0.042 Sum_probs=117.2
Q ss_pred CCCceEEEEEeccCCCCCChhhHHHHHHHHHhhCC-CcEEEEeccCHh------HHHH-------HHhCCCccc------
Q 012811 182 VSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHS-PDIICFQEITPN------IYDI-------LCKSSWWKG------ 241 (456)
Q Consensus 182 ~~~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~-pDII~LQEv~~~------~~~~-------L~~~~~~~~------ 241 (456)
....+||||||+++.....-.+....|.++|...+ +|||+|||+... .... +.+..|..+
T Consensus 12 ~~~~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w~lGt~srp~ 91 (262)
T 2f1n_A 12 DLTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQ 91 (262)
T ss_dssp CGGGCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSC
T ss_pred ccceeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHHHhCCCCCCc
Confidence 34679999999999754221122345777999887 999999999832 1000 111111111
Q ss_pred eEEecCCCCC-CCCCeEEEEEEeeecceeeEeeCCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHH
Q 012811 242 YRCSVPNEMA-DSRGYFCMQLSKLQAKSFTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKE 320 (456)
Q Consensus 242 y~~~~~~~~~-~~~~~g~ailSr~pi~~~~~~~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~ 320 (456)
+.+.+..... ....+++||+||+|+.+...++-+. ...|.++.++| + .+.|+++|+.+... .+
T Consensus 92 ~~yiY~~~~D~~~~r~nlAIlSr~~adev~vLp~~~-~~~Rp~lgiri--~---~~~ff~tHa~a~~g----------~d 155 (262)
T 2f1n_A 92 QVYIYFSAVDALGGRVNLALVSNRRADEVFVLSPVR-QGGRPLLGIRI--G---NDAFFTAHAIAMRN----------ND 155 (262)
T ss_dssp EEEEEEECSCSSSCSSCEEEEESSCCSEEEEECCSS-TTCCCEEEEEE--T---TEEEEEEECCSSSS----------CS
T ss_pred eEEEEEeeccCCCCceeeEEEEcccccceEECCCCC-CCCCceEEEEE--C---CEEEEEEEecCCCC----------cc
Confidence 2222212222 3456889999999998544443222 23688887666 3 49999999999843 23
Q ss_pred HHHHHHHHHHHhhc--C-----CCEEEEccCCCCCCCCCCcCCCCCcccccccccCCCCCccccCCCCccccCCCccCCC
Q 012811 321 RVEQAKEAINLLKK--N-----PNVIFCGDMNWDDKLDGKFPLPDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKR 393 (456)
Q Consensus 321 R~~Q~~~l~~~l~~--~-----~pvIl~GDFN~~~~~~~~~~l~~gl~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~r 393 (456)
|.+|++.+.+++.. . .|+||+||||..|.+...... ..+...+..+.+ ..+|. .+..+
T Consensus 156 a~a~v~~I~~~~~~~~~~~~~~~pwii~GDFNr~P~sl~~~l~-~~~~~~~~~~~p--~~~T~------------~s~~~ 220 (262)
T 2f1n_A 156 APALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNLT-VPVRRASEIISP--AAATQ------------TSQRT 220 (262)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTTSC-HHHHHTEEEECC--SSCSB------------TTSCC
T ss_pred HHHHHHHHHHHHhcCcccccCCCcEEEEecCCCCCcchhhhhh-cccccceEEcCC--CCCCC------------CCCCe
Confidence 78889999998876 3 499999999988876554421 122122333322 23342 23478
Q ss_pred ccEEEEe
Q 012811 394 LDRFICS 400 (456)
Q Consensus 394 ID~I~~s 400 (456)
|||+|+.
T Consensus 221 LDY~~~~ 227 (262)
T 2f1n_A 221 LDYAVAG 227 (262)
T ss_dssp CEEEEEE
T ss_pred EeEEEEc
Confidence 9999998
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.85 E-value=3.8e-21 Score=178.63 Aligned_cols=151 Identities=14% Similarity=0.088 Sum_probs=99.8
Q ss_pred CceEEEEEeccCCCCCChhhHHHHHHHHHhh-CCCcEEEEeccCHhHH-----HHHHh--------CCC--------ccc
Q 012811 184 GSLKILSYNVWFREDLEMHPRMKTIGDLIQL-HSPDIICFQEITPNIY-----DILCK--------SSW--------WKG 241 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~-~~pDII~LQEv~~~~~-----~~L~~--------~~~--------~~~ 241 (456)
..+|||||||++.....-.++...++++|.+ .+||||+|||+...-. ..+.+ ..| ...
T Consensus 3 ~~~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~~w~lg~~~r~~~~ 82 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMV 82 (261)
T ss_dssp GGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCEE
T ss_pred cccEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhhhhhcccccCCCce
Confidence 4799999999986443323333379999999 8899999999984211 01100 111 011
Q ss_pred eEEecCCCCCCCCCeEEEEEEeeecceeeEeeCCCC-CCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHH
Q 012811 242 YRCSVPNEMADSRGYFCMQLSKLQAKSFTCEPFRNS-IMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKE 320 (456)
Q Consensus 242 y~~~~~~~~~~~~~~g~ailSr~pi~~~~~~~~~~~-~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~ 320 (456)
|. ++.......+.+|++|+||+|+.+...++.+.+ .+.|.++.+ +++ | +.|+++|+.+... .+
T Consensus 83 yi-y~~~~d~~~g~~g~AIlSR~~~~~v~~l~~~~~~~~~R~~l~i--~i~-g--~~f~s~Hl~~~~~----------~e 146 (261)
T 1sr4_B 83 YI-YYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQSRPAVGI--RIG-T--DVFFTVHALATGG----------SD 146 (261)
T ss_dssp EE-EEECCCTTTSCSCEEEEESSCCSEEEEECCCCCSSCCCCEEEE--EET-T--EEEEEEECCTTTT----------TT
T ss_pred EE-EEEeecCCCCccceEEEEccchhceEEcCCCCCCCcCcceEEE--EEC-C--eEEEEeCCCCCCC----------ch
Confidence 22 211111123457899999999877666665542 457998766 566 4 9999999998742 33
Q ss_pred HHHHHHHHHHHhhc-----C---CCEEEEccCCCCCCC
Q 012811 321 RVEQAKEAINLLKK-----N---PNVIFCGDMNWDDKL 350 (456)
Q Consensus 321 R~~Q~~~l~~~l~~-----~---~pvIl~GDFN~~~~~ 350 (456)
+..|+..|.+++.. . .++||+||||..+.+
T Consensus 147 a~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p~~ 184 (261)
T 1sr4_B 147 AVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPAN 184 (261)
T ss_dssp HHHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHH
T ss_pred HHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCChhH
Confidence 66777778887633 3 699999999977543
No 28
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.78 E-value=1.4e-19 Score=173.36 Aligned_cols=154 Identities=15% Similarity=0.078 Sum_probs=91.9
Q ss_pred CceEEEEEeccCCCCCChhhHHHHHHHHHhhCCCcE--EEEeccCHh---------HHHHHHhCCCccceEEecCCCCCC
Q 012811 184 GSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDI--ICFQEITPN---------IYDILCKSSWWKGYRCSVPNEMAD 252 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~~~pDI--I~LQEv~~~---------~~~~L~~~~~~~~y~~~~~~~~~~ 252 (456)
-.|+|+||||++.... ..+..+...|...+||| |+|||+... +.+.|.+.+..+.|....... ..
T Consensus 7 ~~i~V~T~Nv~~~~~~---~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~~~~Y~~v~~~~-~~ 82 (282)
T 2imq_X 7 LSVHTVSWNSGHERAP---TNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTI-TE 82 (282)
T ss_dssp EEEEEEEEEEETCCCC---SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEEEE-CS
T ss_pred cEEEEEEEeCCCCcCc---hhHHHHhcccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcCCCceEEEEecc-Cc
Confidence 4699999999876532 22333443444688996 599999733 234444432224565433211 01
Q ss_pred CCCeEEEEEEeeecc---e-eeEeeCCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHH
Q 012811 253 SRGYFCMQLSKLQAK---S-FTCEPFRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEA 328 (456)
Q Consensus 253 ~~~~g~ailSr~pi~---~-~~~~~~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l 328 (456)
..+..++|++|.++. . .....+....-.|+++.+++.+. |..|.++|+||.+.... ...|..|++.|
T Consensus 83 ~~G~~l~vf~k~~~~~~i~~~~~~~~~g~~g~kGav~~r~~~~-~~~~~fvn~HL~~~~~~--------~~~R~~~~~~I 153 (282)
T 2imq_X 83 TMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIY-NKRFSFTTSRMSDEDVT--------STNTKYAYDTR 153 (282)
T ss_dssp SEEEEEEEEGGGCCTTTCCCEEEEEECSTTSCSEEEEEEEEET-TEEEEEEEEECCTTCCC--------TTSSSSSCCGG
T ss_pred eeEEEEEEEEccccCccceeeeeccccccccCCceEEEEEEEC-CEEEEEEEECCCCCCch--------HHHHHHHHHHH
Confidence 123446677787643 2 11111222112467888899997 78999999999997331 12355566556
Q ss_pred HHHhh---cCCCEEEEccCCCCCCC
Q 012811 329 INLLK---KNPNVIFCGDMNWDDKL 350 (456)
Q Consensus 329 ~~~l~---~~~pvIl~GDFN~~~~~ 350 (456)
.+.+. ...++|++||||.....
T Consensus 154 ~~~~~~~~~~~~vi~~GDfN~r~~~ 178 (282)
T 2imq_X 154 LDYSKKDDPSDFLFWIGDLNVRVET 178 (282)
T ss_dssp GCTTSSSSCCSEEEEEEECSCCBCS
T ss_pred HHhhhccCccceEEEecccccccCC
Confidence 55543 35689999999976543
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.73 E-value=7.9e-17 Score=157.69 Aligned_cols=226 Identities=19% Similarity=0.154 Sum_probs=134.9
Q ss_pred CceEEEEEeccCCCCCChhhHHHHHHHHHhh---CCCcE--EEEeccCH---------------h----HHHHHHhCC-C
Q 012811 184 GSLKILSYNVWFREDLEMHPRMKTIGDLIQL---HSPDI--ICFQEITP---------------N----IYDILCKSS-W 238 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~---~~pDI--I~LQEv~~---------------~----~~~~L~~~~-~ 238 (456)
-.+.|+||||.+.... ..|.++|.. ..||| |+|||+.+ . +.+.|.... .
T Consensus 25 ~~i~v~TwNv~g~~~~------~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~i~~~L~~~~~~ 98 (347)
T 1i9z_A 25 VKIFVASYNLNGCSAT------TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTS 98 (347)
T ss_dssp EEEEEEEEECTTCCCC------SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred cEEEEEeEecCCCCCc------hhHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHHHHHHHhhcccC
Confidence 4689999999987641 136777774 67999 89999842 1 123343211 1
Q ss_pred ccceEEecCCCCCCCCCeEEEEEEeeecceee-Eee-----CCC--CCCCCceEEEEEEeCCcceEEEEEeccCCCCCCC
Q 012811 239 WKGYRCSVPNEMADSRGYFCMQLSKLQAKSFT-CEP-----FRN--SIMGRELCVAEVEVQGKKPLVVATSHLESPCPGP 310 (456)
Q Consensus 239 ~~~y~~~~~~~~~~~~~~g~ailSr~pi~~~~-~~~-----~~~--~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~ 310 (456)
...|....... -.+.+++||+|.++.... .+. ..- ..-.++++.+++.+. +..|.++|+||.+...
T Consensus 99 ~~~Y~~v~s~~---l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~-~~~l~fvn~HLaa~~~-- 172 (347)
T 1i9z_A 99 GPGYVQLRSGQ---LVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYE-DTGLCFITSHLAAGYT-- 172 (347)
T ss_dssp SCCEEEEEEEE---ETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEET-TEEEEEEEEECCCCSS--
T ss_pred CCceeEEEEee---ccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEEC-CeEEEEEEecCCCCCc--
Confidence 24565433211 235678999998875432 111 211 111378888899998 6899999999999743
Q ss_pred CccccccHHHHHHHHHHHHHHhh--------cCCCEEEEccCCCCCCCCC---Cc---------CCCC-Cc---------
Q 012811 311 PTWDQMFSKERVEQAKEAINLLK--------KNPNVIFCGDMNWDDKLDG---KF---------PLPD-GW--------- 360 (456)
Q Consensus 311 ~~~~~~~~~~R~~Q~~~l~~~l~--------~~~pvIl~GDFN~~~~~~~---~~---------~l~~-gl--------- 360 (456)
...+|..++..|.+.+. ...++|++||||...+... .. .+.. .|
T Consensus 173 ------~~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~ 246 (347)
T 1i9z_A 173 ------NYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKV 246 (347)
T ss_dssp ------CHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSS
T ss_pred ------cHHHHHHHHHHHHHhhccCcccccccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCc
Confidence 24679999998888763 3578999999995443211 00 0000 11
Q ss_pred ccccccccCCCCCccccCCCCccccCCCccCCCc----cEEEEecCCCccceEEEeeccccCCchhhhhhhhhhhhhccC
Q 012811 361 VDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRL----DRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLE 436 (456)
Q Consensus 361 ~D~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~rI----D~I~~s~~~~~~~~~~~~g~d~~p~~~~~~~~~~~~~~~~~~ 436 (456)
.+.|.+. +-...+||....+... .......|+ ||||+++ .+++..+...
T Consensus 247 f~~f~E~-~i~F~PTYK~~~~~~~-yd~s~k~R~PsWcDRIL~~~-~l~~~~Y~~~------------------------ 299 (347)
T 1i9z_A 247 FPFFSEL-PITFPPTYKFDIGTDI-YDTSDKHRVPAWTDRILYRG-ELVPHSYQSV------------------------ 299 (347)
T ss_dssp STTCBCC-CCCSCCCBCBCTTSSC-BCCSTTCCCCBCCEEEEEES-SCEEEEEEEC------------------------
T ss_pred ccccccC-CCCCCCCcccCCCCcc-ccccccccCCcccceEEEeC-CEEEEEEEec------------------------
Confidence 1233333 2345566654432210 000123455 9999996 5554444432
Q ss_pred CCCCccCCcceeEEEEecc
Q 012811 437 LPVLPSDHYGLLLTISNNI 455 (456)
Q Consensus 437 ~~~~~SDH~pV~~~~~~~~ 455 (456)
....|||.||++.|++.+
T Consensus 300 -~~~~SDH~PV~a~f~~~v 317 (347)
T 1i9z_A 300 -PLYYSDHRPIYATYEANI 317 (347)
T ss_dssp -CCCSSSBCCEEEEEEEEE
T ss_pred -CccCCCcCCceeEEEEEE
Confidence 135899999999998753
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.58 E-value=5.1e-14 Score=138.02 Aligned_cols=152 Identities=15% Similarity=0.093 Sum_probs=95.6
Q ss_pred CceEEEEEeccCCCCCChhhHHHHHH-HHHhhCCCcE--EEEeccCHh---HHHHHHhCCCccceEEecCCCCCCCCCeE
Q 012811 184 GSLKILSYNVWFREDLEMHPRMKTIG-DLIQLHSPDI--ICFQEITPN---IYDILCKSSWWKGYRCSVPNEMADSRGYF 257 (456)
Q Consensus 184 ~~lrV~T~Nv~~~~~~~~~~r~~~i~-~~I~~~~pDI--I~LQEv~~~---~~~~L~~~~~~~~y~~~~~~~~~~~~~~g 257 (456)
-.+.|+||||.+..... ..+..++ ..+....||| |+|||+... +.+.|.+.++ ..|....... -.+.+
T Consensus 26 l~i~v~TwNv~g~~~~~--~~L~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~-~~Y~~v~s~~---l~g~~ 99 (357)
T 2xsw_A 26 VALFVATWNMQGQKELP--PSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLG-PHYVLLSSAA---HGVLY 99 (357)
T ss_dssp EEEEEEEEECTTCSSCC--SCCHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHC-TTEEEEEEEE---ETTEE
T ss_pred ceEEEEEEecCCCCCCc--ccHHHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhC-Ccccchhhhh---hhhEE
Confidence 35889999999753211 1222221 1123457996 889999843 4455555432 3454433211 24577
Q ss_pred EEEEEeeeccee----e--Eee--CCCCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCccccccHHHHHHHHHHHH
Q 012811 258 CMQLSKLQAKSF----T--CEP--FRNSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAI 329 (456)
Q Consensus 258 ~ailSr~pi~~~----~--~~~--~~~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~~~~R~~Q~~~l~ 329 (456)
++||+|.++... . .+. +....-.++++.+++.+. +..|.++|+||.+... ....|..++..|.
T Consensus 100 l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~-~t~~~Fvn~HLaa~~~--------~~~~Rn~d~~~I~ 170 (357)
T 2xsw_A 100 MSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFF-GTSFLFITSHFTSGDG--------KVAERLLDYTRTV 170 (357)
T ss_dssp EEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEET-TEEEEEEEEECCCSTT--------CHHHHHHHHHHHH
T ss_pred EEEEEchHHhhcCceeEecccccccccccccccEEEEEEEEC-CeEEEEEEEccCCCCc--------hHHHHHHHHHHHH
Confidence 999999775321 1 111 100001257778899998 7899999999999843 3478999999998
Q ss_pred HHhh--------------------cCCCEEEEccCCCCCCC
Q 012811 330 NLLK--------------------KNPNVIFCGDMNWDDKL 350 (456)
Q Consensus 330 ~~l~--------------------~~~pvIl~GDFN~~~~~ 350 (456)
+.+. ....+|++||||...+.
T Consensus 171 ~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~ 211 (357)
T 2xsw_A 171 QALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSG 211 (357)
T ss_dssp HHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSS
T ss_pred HHhcccccccccccccccccccccccceEEEecccCccccc
Confidence 8763 14689999999976553
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=99.45 E-value=7.4e-12 Score=119.54 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=91.9
Q ss_pred ceEEEEEeccCCCCCChhhHHHHHHHHHhh--CCCc--EEEEeccCHh--------------HHHHHHhCCC-ccceEEe
Q 012811 185 SLKILSYNVWFREDLEMHPRMKTIGDLIQL--HSPD--IICFQEITPN--------------IYDILCKSSW-WKGYRCS 245 (456)
Q Consensus 185 ~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~~--~~pD--II~LQEv~~~--------------~~~~L~~~~~-~~~y~~~ 245 (456)
++.|.||||.+.... ..|.++|.. ..|| ||+|||+... +.+.+.+.+. ...|...
T Consensus 9 ~i~v~TwNvng~~~~------~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~Y~~v 82 (313)
T 3mtc_A 9 RFFAGTYNVNGQSPK------ECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKV 82 (313)
T ss_dssp EEEEEEEECTTCCCC------SCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred EEEEEEEEcCCccCc------hhHHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCCEEEE
Confidence 467899999987542 235667764 6799 7999998521 2333443332 1246544
Q ss_pred cCCCCCCCCCeEEEEEEeeecc----ee--eEeeCCCC-CC-CCceEEEEEEeCCcceEEEEEeccCCCCCCCCcccccc
Q 012811 246 VPNEMADSRGYFCMQLSKLQAK----SF--TCEPFRNS-IM-GRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQMF 317 (456)
Q Consensus 246 ~~~~~~~~~~~g~ailSr~pi~----~~--~~~~~~~~-~~-~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~~~ 317 (456)
.... -.+..+.||.|-.+. .. ..+...-. .+ .++++.+++.+. +..+.++|+||.+.. ..
T Consensus 83 ~s~~---lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~-~ts~cFVnsHLaA~~--------~~ 150 (313)
T 3mtc_A 83 KLIR---LVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFH-NTSICVVNSHLAAHI--------EE 150 (313)
T ss_dssp EEEE---ETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEET-TEEEEEEEEECCCSG--------GG
T ss_pred EEec---hhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEEC-CcEEEEEeeccCCCc--------hH
Confidence 3211 134456677764322 11 12221111 12 367778899998 689999999999983 33
Q ss_pred HHHHHHHHHHHHHHhh--------------cCCCEEEEccCCCCCC
Q 012811 318 SKERVEQAKEAINLLK--------------KNPNVIFCGDMNWDDK 349 (456)
Q Consensus 318 ~~~R~~Q~~~l~~~l~--------------~~~pvIl~GDFN~~~~ 349 (456)
...|..+...|.+.+. ....+|++||||-.-.
T Consensus 151 ~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 151 YERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp HHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBC
T ss_pred HHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEecccccccc
Confidence 5788999998888763 1345999999996543
No 32
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=99.44 E-value=1.9e-14 Score=112.89 Aligned_cols=70 Identities=26% Similarity=0.631 Sum_probs=26.3
Q ss_pred CCCCCceecCCCcccccccccccccccCCCCCCCC--------CCC----------C------CCCCCCcccCCCCCccc
Q 012811 34 SSMSSWACKKCTFLNSPSRKSTCQICLTPSSSFSP--------PSK----------S------SVSVPTWSCKACTFLNP 89 (456)
Q Consensus 34 ~~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~--------~~~----------~------~~~~~~W~C~~Ct~~N~ 89 (456)
.+..+|.|..||+.|.+ .+..|.+|+.+|+.... ..+ . ....+.|.|+.||+.|.
T Consensus 5 ~~~~~W~C~~C~~~N~~-~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~~C~~~N~ 83 (98)
T 3gj7_B 5 SAGSSWQCDTCLLQNKV-TDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCDTCLVQNK 83 (98)
T ss_dssp -------------------------------------------------------------------CCEECTTTCCEEC
T ss_pred CCCCcccCCccccCChh-hcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCCcCcCCCh
Confidence 34467999999999999 49999999999874320 000 0 12457899999999999
Q ss_pred cccccccccCCCCCC
Q 012811 90 YNNTSCELCNTRAPV 104 (456)
Q Consensus 90 ~~~~~C~~C~~~~~~ 104 (456)
..+..|.+|+++||.
T Consensus 84 ~~~~~C~aC~tpkPg 98 (98)
T 3gj7_B 84 PEAVKCVACETPKPG 98 (98)
T ss_dssp TTCSBCTTTCCBCC-
T ss_pred hhcceecccCCCCCC
Confidence 999999999999984
No 33
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=99.30 E-value=9.8e-11 Score=112.09 Aligned_cols=146 Identities=16% Similarity=0.084 Sum_probs=89.0
Q ss_pred ceEEEEEeccCCCCCChhhHHHHHHHHHh-------------hCCCcEE--EEeccCH---hHHHHHHhCCC---ccceE
Q 012811 185 SLKILSYNVWFREDLEMHPRMKTIGDLIQ-------------LHSPDII--CFQEITP---NIYDILCKSSW---WKGYR 243 (456)
Q Consensus 185 ~lrV~T~Nv~~~~~~~~~~r~~~i~~~I~-------------~~~pDII--~LQEv~~---~~~~~L~~~~~---~~~y~ 243 (456)
++-|.||||.+.... . .|.++|. ...|||+ +|||+.. .+.+.|.+.+. ...|.
T Consensus 9 ~i~vgTwNv~g~~p~---~---~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~ 82 (316)
T 4a9c_A 9 SVFIGTWNMGSVPPP---K---NVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYR 82 (316)
T ss_dssp EEEEEEEECTTSCCC---S---CCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEEEeEcCCcCCC---c---chhHhhcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCEE
Confidence 578899999876532 1 2455553 2357976 9999962 22333332211 12355
Q ss_pred EecCCCCCCCCCeEEEEEEeeeccee----e--EeeCC--CCCCCCceEEEEEEeCCcceEEEEEeccCCCCCCCCcccc
Q 012811 244 CSVPNEMADSRGYFCMQLSKLQAKSF----T--CEPFR--NSIMGRELCVAEVEVQGKKPLVVATSHLESPCPGPPTWDQ 315 (456)
Q Consensus 244 ~~~~~~~~~~~~~g~ailSr~pi~~~----~--~~~~~--~~~~~R~~~~~~i~~~~g~~l~v~n~Hl~~~~~~~~~~~~ 315 (456)
...... -.+..++||.|..+... . .+... ...-.++++.+++.+. +..|.++|+||.+...
T Consensus 83 ~v~s~~---L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~-~ts~~FVn~HLaAg~~------- 151 (316)
T 4a9c_A 83 PIAMQS---LWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFN-GTSFGFVNCHLTSGNE------- 151 (316)
T ss_dssp EEEEEE---ETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEET-TEEEEEEEEECCCSTT-------
T ss_pred EEEeee---ehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEEC-CcEEEEEEeccccCch-------
Confidence 433211 24567888888654321 1 11111 1111357777889997 7899999999998732
Q ss_pred ccHHHHHHHHHHHHHHhhc-------------CCCEEEEccCCCCC
Q 012811 316 MFSKERVEQAKEAINLLKK-------------NPNVIFCGDMNWDD 348 (456)
Q Consensus 316 ~~~~~R~~Q~~~l~~~l~~-------------~~pvIl~GDFN~~~ 348 (456)
...+|..+...|.+.+.- ...+|++||||-.-
T Consensus 152 -~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi 196 (316)
T 4a9c_A 152 -KTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRL 196 (316)
T ss_dssp -CHHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCB
T ss_pred -HHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCc
Confidence 357899999988876531 23599999999654
No 34
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.25 E-value=1.3e-12 Score=102.07 Aligned_cols=67 Identities=25% Similarity=0.637 Sum_probs=26.4
Q ss_pred CCceecCCCcccccccccccccccCCCCCCCCCCC------------------CCCCCCCcccCCCCCcccccccccccc
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFSPPSK------------------SSVSVPTWSCKACTFLNPYNNTSCELC 98 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~------------------~~~~~~~W~C~~Ct~~N~~~~~~C~~C 98 (456)
++|.|..|+++|.++ ...|.+|+++|+......+ .....+.|.|+.|+++|+.....|.+|
T Consensus 7 g~W~C~~C~~~N~~~-~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~~~f~~~~g~W~C~~C~~~N~a~~~~C~~C 85 (92)
T 3gj8_B 7 GSWECPVCCVSNKAE-DSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCEVCLVQNKADSTKCIAC 85 (92)
T ss_dssp ----------------------------------------------------------CCEECTTTCCEECSSCSBCTTT
T ss_pred cCCCCCcCCCEeccc-cceecccCCCCCCCCCccccccCcccccccccccccccCCCCCcccCCcCCcCChhhccccccc
Confidence 689999999999994 9999999999975321110 012467999999999999999999999
Q ss_pred CCCCCC
Q 012811 99 NTRAPV 104 (456)
Q Consensus 99 ~~~~~~ 104 (456)
++++|.
T Consensus 86 ~~pkp~ 91 (92)
T 3gj8_B 86 ESAKPG 91 (92)
T ss_dssp CCBCC-
T ss_pred CCCCCC
Confidence 999985
No 35
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=99.01 E-value=3.3e-11 Score=122.78 Aligned_cols=70 Identities=29% Similarity=0.543 Sum_probs=0.0
Q ss_pred CCCceecCCCcccccc--------cccccccccCCCCCCCCCC---------------CCCCCCCCcccCCCCCcccccc
Q 012811 36 MSSWACKKCTFLNSPS--------RKSTCQICLTPSSSFSPPS---------------KSSVSVPTWSCKACTFLNPYNN 92 (456)
Q Consensus 36 ~~~W~C~~Ct~~N~~s--------~~~~C~~C~~~~~~~~~~~---------------~~~~~~~~W~C~~Ct~~N~~~~ 92 (456)
...|.|++|+|.|+.. ....|.+||.+.+...... ........-+||+|||+|+|..
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP~CTF~NHPsl 194 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQI 194 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCCcccccCChhh
Confidence 3679999999999951 2368999999875322100 0011123578999999999999
Q ss_pred ccccccCCCCCCC
Q 012811 93 TSCELCNTRAPVS 105 (456)
Q Consensus 93 ~~C~~C~~~~~~~ 105 (456)
..|||||++.+..
T Consensus 195 ~~CEiCg~~L~~~ 207 (566)
T 1w7p_D 195 GNCEICGHRLPNA 207 (566)
T ss_dssp -------------
T ss_pred hcccccCCcCCCc
Confidence 9999999999884
No 36
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=98.80 E-value=1.9e-09 Score=67.36 Aligned_cols=28 Identities=39% Similarity=0.825 Sum_probs=25.2
Q ss_pred CCCcccCCCCCccccccccccccCCCCC
Q 012811 76 VPTWSCKACTFLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 76 ~~~W~C~~Ct~~N~~~~~~C~~C~~~~~ 103 (456)
...|+|++|||+|++....|+||+++|+
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 4589999999999999999999999886
No 37
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=98.79 E-value=9.8e-09 Score=69.88 Aligned_cols=33 Identities=30% Similarity=0.754 Sum_probs=29.0
Q ss_pred CCCCCcccCCCCCccccccccccccCCCCCCCC
Q 012811 74 VSVPTWSCKACTFLNPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 74 ~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~~ 106 (456)
..+..|+|++|||.|++....|+||+++|+...
T Consensus 6 ~~~~~W~Cp~CTf~N~p~~~~CemC~~prp~~~ 38 (52)
T 2crc_A 6 SGPVGWQCPGCTFINKPTRPGCEMCCRARPEAY 38 (52)
T ss_dssp CCSSSBCCTTTCCCBCTTCSSCSSSCCCCCTTS
T ss_pred CCCCCccCCCcccccCCCCCeeCCCCCcCCccc
Confidence 334589999999999999999999999999764
No 38
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=98.78 E-value=2.9e-09 Score=65.07 Aligned_cols=27 Identities=33% Similarity=0.957 Sum_probs=23.6
Q ss_pred CCCcccCCCCCccccccccccccCCCC
Q 012811 76 VPTWSCKACTFLNPYNNTSCELCNTRA 102 (456)
Q Consensus 76 ~~~W~C~~Ct~~N~~~~~~C~~C~~~~ 102 (456)
...|+|++|||+|++....|+||+++|
T Consensus 4 ~~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 4 SAMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp SCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred CccccCCcccccCCCCCCccCCcCCCC
Confidence 357999999999999999999999887
No 39
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=6.3e-09 Score=71.50 Aligned_cols=32 Identities=31% Similarity=0.735 Sum_probs=28.5
Q ss_pred CCCCcccCCCCCccccccccccccCCCCCCCC
Q 012811 75 SVPTWSCKACTFLNPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 75 ~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~~ 106 (456)
....|.|+.|||.|++....|+||+++|+.+.
T Consensus 8 ~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s~ 39 (53)
T 2d9g_A 8 DEGYWDCSVCTFRNSAEAFKCMMCDVRKGTST 39 (53)
T ss_dssp CCCCEECSSSCCEECSSCSSCSSSCCCCCCCC
T ss_pred CCCCcCCCCCccCCCCCCCccCCCCCcCCccc
Confidence 34589999999999999999999999999654
No 40
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.71 E-value=4.7e-09 Score=64.18 Aligned_cols=29 Identities=31% Similarity=0.767 Sum_probs=21.4
Q ss_pred CCCCcccCCCCCccccccccccccCCCCC
Q 012811 75 SVPTWSCKACTFLNPYNNTSCELCNTRAP 103 (456)
Q Consensus 75 ~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~ 103 (456)
..++|.|+.||+.|.+.+..|.+|+++||
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCC
Confidence 34578888888888888888888888776
No 41
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.55 E-value=2.5e-08 Score=60.93 Aligned_cols=27 Identities=33% Similarity=0.934 Sum_probs=25.5
Q ss_pred CCceecCCCcccccccccccccccCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSS 64 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~ 64 (456)
++|.|..||+.|.+ .+..|.+|++|||
T Consensus 6 g~W~C~~C~~~N~~-~~~kC~aC~tpkP 32 (33)
T 3gj3_B 6 GTWDCDTCLVQNKP-EAVKCVACETPKP 32 (33)
T ss_dssp CCEECTTTCCEECT-TCSBCTTTCCBCC
T ss_pred CceeCCcccCCCcc-ccCEEcccCCCCC
Confidence 78999999999999 5999999999987
No 42
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=98.50 E-value=7.4e-08 Score=68.11 Aligned_cols=31 Identities=32% Similarity=0.814 Sum_probs=28.2
Q ss_pred CCCcccCCCCCccccccccccccCCCCCCCC
Q 012811 76 VPTWSCKACTFLNPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 76 ~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~~ 106 (456)
...|+|++|||.|++....|+||+++|+...
T Consensus 6 ~~~W~CP~CTf~N~p~~p~CEmC~~prp~~~ 36 (64)
T 3b08_B 6 PVGWQCPGCTFINKPTRPGCEMCCRARPETY 36 (64)
T ss_dssp CCSEECTTTCCEECTTCSBCTTTCCBCCSSC
T ss_pred CCCCcCCCccccCCCCCCccCcCCCCCCccc
Confidence 4589999999999999999999999999764
No 43
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=98.47 E-value=7e-08 Score=58.84 Aligned_cols=26 Identities=42% Similarity=1.225 Sum_probs=24.2
Q ss_pred CCceecCCCcccccccccccccccCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPS 63 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~ 63 (456)
..|.|+.|||+|++ ....|++|+.+|
T Consensus 5 ~~W~C~~CTf~N~~-~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQP-GTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECS-SCSSCSSSCCCC
T ss_pred ccccCCcccccCCC-CCCccCCcCCCC
Confidence 57999999999999 599999999887
No 44
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=98.44 E-value=7.9e-08 Score=59.96 Aligned_cols=27 Identities=41% Similarity=1.042 Sum_probs=24.9
Q ss_pred CCceecCCCcccccccccccccccCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSS 64 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~ 64 (456)
..|.|+.|||+|++ ....|++|+.+|+
T Consensus 7 ~~W~C~~CT~~N~~-~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 7 AQWNCTACTFLNHP-ALIRCEQCEMPRH 33 (34)
T ss_dssp CCEECTTTCCEECT-TCSBCTTTCCBSC
T ss_pred CcCCCCCCccccCC-CCCeeCCCCCcCc
Confidence 57999999999999 5999999999875
No 45
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=1.7e-07 Score=64.29 Aligned_cols=30 Identities=30% Similarity=0.722 Sum_probs=27.0
Q ss_pred CCceecCCCcccccccccccccccCCCCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFS 67 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~ 67 (456)
..|.|+.|||+|++ ....|+||++||+.+.
T Consensus 10 ~~W~C~~CT~~N~~-~~~~C~~C~~pr~~s~ 39 (53)
T 2d9g_A 10 GYWDCSVCTFRNSA-EAFKCMMCDVRKGTST 39 (53)
T ss_dssp CCEECSSSCCEECS-SCSSCSSSCCCCCCCC
T ss_pred CCcCCCCCccCCCC-CCCccCCCCCcCCccc
Confidence 57999999999999 5999999999998644
No 46
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=98.32 E-value=3.4e-07 Score=62.28 Aligned_cols=35 Identities=29% Similarity=0.780 Sum_probs=28.9
Q ss_pred CCCCCCCceecCCCcccccccccccccccCCCCCCC
Q 012811 32 RGSSMSSWACKKCTFLNSPSRKSTCQICLTPSSSFS 67 (456)
Q Consensus 32 ~~~~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~ 67 (456)
+......|.|+.|||+|.+ ....|++|+.+|+...
T Consensus 4 ~s~~~~~W~Cp~CTf~N~p-~~~~CemC~~prp~~~ 38 (52)
T 2crc_A 4 GSSGPVGWQCPGCTFINKP-TRPGCEMCCRARPEAY 38 (52)
T ss_dssp SCCCSSSBCCTTTCCCBCT-TCSSCSSSCCCCCTTS
T ss_pred CCCCCCCccCCCcccccCC-CCCeeCCCCCcCCccc
Confidence 3344458999999999999 5999999999998653
No 47
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.24 E-value=3.6e-07 Score=56.06 Aligned_cols=29 Identities=28% Similarity=0.765 Sum_probs=19.9
Q ss_pred CCCcccCCCCCccccccccccccCCCCCC
Q 012811 76 VPTWSCKACTFLNPYNNTSCELCNTRAPV 104 (456)
Q Consensus 76 ~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~ 104 (456)
.+.|.|..|++.|.+....|.+|++++|.
T Consensus 5 ~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 5 SGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp -CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCceECCeeEeECccccCEEcccCCcCCC
Confidence 45677777777777777777777777764
No 48
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=2e-06 Score=56.84 Aligned_cols=34 Identities=29% Similarity=0.627 Sum_probs=26.4
Q ss_pred CCCCCCcccCCCCCccccccccccccCCCCCCCC
Q 012811 73 SVSVPTWSCKACTFLNPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 73 ~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~~ 106 (456)
....+.|.|..|++.|......|.+|++|++...
T Consensus 6 ~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 6 SGVIGTWDCDTCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp CCCSSSEECSSSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CCCCCceECCeeeccCccCCceecCcCCCCCCCc
Confidence 3445678888888888888888888888887765
No 49
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.07 E-value=1.3e-06 Score=53.53 Aligned_cols=28 Identities=25% Similarity=0.748 Sum_probs=24.7
Q ss_pred CCceecCCCcccccccccccccccCCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSS 65 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~ 65 (456)
++|.|..|++.|.++ +..|.+|++++|.
T Consensus 6 G~W~C~~C~v~N~~~-~~kC~aCet~Kpg 33 (34)
T 3gj5_B 6 GSWDCEVCLVQNKAD-STKCIACESAKPG 33 (34)
T ss_dssp CCEECTTTCCEECSS-CSBCTTTCCBC--
T ss_pred CceECCeeEeECccc-cCEEcccCCcCCC
Confidence 789999999999994 9999999999874
No 50
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=4.7e-06 Score=55.07 Aligned_cols=33 Identities=27% Similarity=0.759 Sum_probs=28.8
Q ss_pred CCCCCceecCCCcccccccccccccccCCCCCCC
Q 012811 34 SSMSSWACKKCTFLNSPSRKSTCQICLTPSSSFS 67 (456)
Q Consensus 34 ~~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~ 67 (456)
...+.|.|..|++.|.+ ....|.+|++|++...
T Consensus 7 ~~~g~W~C~~C~v~N~a-~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 7 GVIGTWDCDTCLVQNKP-EAIKCVACETPKPGTC 39 (47)
T ss_dssp CCSSSEECSSSCCEECS-SCSBCSSSCCBCSCSS
T ss_pred CCCCceECCeeeccCcc-CCceecCcCCCCCCCc
Confidence 34478999999999999 5999999999998654
No 51
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=97.97 E-value=4.7e-06 Score=58.92 Aligned_cols=30 Identities=30% Similarity=0.915 Sum_probs=27.0
Q ss_pred CCceecCCCcccccccccccccccCCCCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFS 67 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~ 67 (456)
..|.|+.|||+|.+ ....|++|+++++...
T Consensus 7 ~~W~CP~CTf~N~p-~~p~CEmC~~prp~~~ 36 (64)
T 3b08_B 7 VGWQCPGCTFINKP-TRPGCEMCCRARPETY 36 (64)
T ss_dssp CSEECTTTCCEECT-TCSBCTTTCCBCCSSC
T ss_pred CCCcCCCccccCCC-CCCccCcCCCCCCccc
Confidence 57999999999999 5999999999998654
No 52
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=6.5e-06 Score=54.58 Aligned_cols=32 Identities=25% Similarity=0.678 Sum_probs=24.0
Q ss_pred CCCCcccCCCCCccccccccccccCCCCCCCC
Q 012811 75 SVPTWSCKACTFLNPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 75 ~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~~ 106 (456)
..+.|.|..|++.|......|.+|++|+|...
T Consensus 8 ~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 8 PEGSWDCELCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp CCSSCCCSSSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred CCCeeECCeeecCCcCCcceecCcCCCCCCCc
Confidence 34568888888888888777888888777765
No 53
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=9.6e-06 Score=53.75 Aligned_cols=33 Identities=21% Similarity=0.593 Sum_probs=29.1
Q ss_pred CCCCCceecCCCcccccccccccccccCCCCCCC
Q 012811 34 SSMSSWACKKCTFLNSPSRKSTCQICLTPSSSFS 67 (456)
Q Consensus 34 ~~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~ 67 (456)
...+.|.|..|++.|.+ ....|.+|++|++...
T Consensus 7 ~~~gsW~C~~C~v~N~a-~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 7 GPEGSWDCELCLVQNKA-DSTKCLACESAKPGTK 39 (47)
T ss_dssp SCCSSCCCSSSCCCCCS-SCSBCSSSCCBCCCCC
T ss_pred CCCCeeECCeeecCCcC-CcceecCcCCCCCCCc
Confidence 44578999999999999 5999999999998664
No 54
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=5.7e-05 Score=52.07 Aligned_cols=30 Identities=23% Similarity=0.770 Sum_probs=23.1
Q ss_pred CCCCCceecCCCcccccccccccccccCCCC
Q 012811 34 SSMSSWACKKCTFLNSPSRKSTCQICLTPSS 64 (456)
Q Consensus 34 ~~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~ 64 (456)
...+.|.|..|.+.|.+ ....|.+|++|+|
T Consensus 27 ~~~GsWeC~~C~V~N~a-~~~kC~ACetpKP 56 (57)
T 2ebv_A 27 RPIGSWECSVCCVSNNA-EDNKCVSCMSEKP 56 (57)
T ss_dssp CCSSSCCCSSSCCCCCS-SCSBCSSSCCBCC
T ss_pred CCCCeeeCCeeEccCcc-CCceeeEcCCcCC
Confidence 34467888888888888 4888888888776
No 55
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=97.65 E-value=1.8e-05 Score=48.24 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=23.4
Q ss_pred CCCCcccCCCCCccccccccccccCCCCCC
Q 012811 75 SVPTWSCKACTFLNPYNNTSCELCNTRAPV 104 (456)
Q Consensus 75 ~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~ 104 (456)
+.+.|.|+.|.++|......|-.|+++|+.
T Consensus 2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 346788888888888888888888888763
No 56
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=97.61 E-value=4.6e-05 Score=46.73 Aligned_cols=29 Identities=31% Similarity=0.784 Sum_probs=19.6
Q ss_pred CCCcccCCCCCccccccccccccCCCCCC
Q 012811 76 VPTWSCKACTFLNPYNNTSCELCNTRAPV 104 (456)
Q Consensus 76 ~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~ 104 (456)
.+.|.|+.|.++|.+....|-.|++||+.
T Consensus 4 ~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp SSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCcccCCCCCccccccccccccCCcCCC
Confidence 45677777777777777777777776653
No 57
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=4.5e-05 Score=52.58 Aligned_cols=31 Identities=23% Similarity=0.683 Sum_probs=28.3
Q ss_pred CCCCCcccCCCCCccccccccccccCCCCCC
Q 012811 74 VSVPTWSCKACTFLNPYNNTSCELCNTRAPV 104 (456)
Q Consensus 74 ~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~ 104 (456)
...+.|.|..|.+.|......|.+|++|+|.
T Consensus 27 ~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 27 RPIGSWECSVCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp CCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence 4567899999999999999999999999984
No 58
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=97.48 E-value=7.8e-05 Score=45.70 Aligned_cols=29 Identities=38% Similarity=0.966 Sum_probs=26.3
Q ss_pred CCCceecCCCcccccccccccccccCCCCC
Q 012811 36 MSSWACKKCTFLNSPSRKSTCQICLTPSSS 65 (456)
Q Consensus 36 ~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~ 65 (456)
.+.|.|+.|..+|.+ ....|-.|++|++.
T Consensus 4 ~gDW~C~~C~~~Nfa-~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWA-RRSECNMCNTPKYA 32 (33)
T ss_dssp SSSCBCSSSCCBCCT-TCSBCSSSCCBTTC
T ss_pred CCCcccCCCCCcccc-ccccccccCCcCCC
Confidence 478999999999999 69999999999863
No 59
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=97.41 E-value=5.1e-05 Score=59.24 Aligned_cols=29 Identities=31% Similarity=0.911 Sum_probs=25.6
Q ss_pred CCCCceecCCCcccccccccccccccCCCC
Q 012811 35 SMSSWACKKCTFLNSPSRKSTCQICLTPSS 64 (456)
Q Consensus 35 ~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~ 64 (456)
..++|.|..||+.|.+ .+..|.+|++|||
T Consensus 69 ~~g~W~C~~C~~~N~~-~~~~C~aC~tpkP 97 (98)
T 3gj7_B 69 AIGTWDCDTCLVQNKP-EAVKCVACETPKP 97 (98)
T ss_dssp --CCEECTTTCCEECT-TCSBCTTTCCBCC
T ss_pred CCCcccCCcCcCCChh-hcceecccCCCCC
Confidence 4578999999999999 5999999999987
No 60
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=97.33 E-value=8.1e-05 Score=45.30 Aligned_cols=28 Identities=25% Similarity=0.643 Sum_probs=25.7
Q ss_pred CCceecCCCcccccccccccccccCCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSS 65 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~ 65 (456)
++|.|+.|.++|.+ ....|-.|++|++.
T Consensus 4 gDW~C~~C~~~Nfa-~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 4 EDWLCNKCCLNNFR-KRLKCFRCGADKFD 31 (32)
T ss_dssp SEEECTTTCCEEET-TCCBCTTTCCBTTC
T ss_pred CCCCcCcCcCCcCh-hcceecCCCCcCCC
Confidence 78999999999999 59999999999864
No 61
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=97.18 E-value=0.00043 Score=45.58 Aligned_cols=32 Identities=31% Similarity=0.630 Sum_probs=25.5
Q ss_pred CCCCCcccC--CCCCccccccccccccCCCCCCC
Q 012811 74 VSVPTWSCK--ACTFLNPYNNTSCELCNTRAPVS 105 (456)
Q Consensus 74 ~~~~~W~C~--~Ct~~N~~~~~~C~~C~~~~~~~ 105 (456)
...+.|.|+ .|.++|.+....|-.|+++|+..
T Consensus 10 ~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred CCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 456778888 78888888888888888888754
No 62
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=96.92 E-value=0.00032 Score=54.29 Aligned_cols=30 Identities=23% Similarity=0.671 Sum_probs=25.6
Q ss_pred CCCCceecCCCcccccccccccccccCCCCC
Q 012811 35 SMSSWACKKCTFLNSPSRKSTCQICLTPSSS 65 (456)
Q Consensus 35 ~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~ 65 (456)
..++|.|..|+++|++ ....|.+|++++|.
T Consensus 62 ~~g~W~C~~C~~~N~a-~~~~C~~C~~pkp~ 91 (92)
T 3gj8_B 62 PEGSWDCEVCLVQNKA-DSTKCIACESAKPG 91 (92)
T ss_dssp --CCEECTTTCCEECS-SCSBCTTTCCBCC-
T ss_pred CCCcccCCcCCcCChh-hcccccccCCCCCC
Confidence 4589999999999999 59999999999874
No 63
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=96.85 E-value=0.0011 Score=43.68 Aligned_cols=30 Identities=27% Similarity=0.672 Sum_probs=26.9
Q ss_pred CCCceec--CCCcccccccccccccccCCCCCC
Q 012811 36 MSSWACK--KCTFLNSPSRKSTCQICLTPSSSF 66 (456)
Q Consensus 36 ~~~W~C~--~Ct~~N~~s~~~~C~~C~~~~~~~ 66 (456)
.++|.|+ .|..+|++ ....|-.|++||+..
T Consensus 12 ~GDW~C~~~~C~~~Nfa-~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 12 DGDWICPDKKCGNVNFA-RRTSCDRCGREKTTG 43 (45)
T ss_dssp SSSCBCSSTTTCCBCCS-SCSBCSSSCCBCCCC
T ss_pred CCCcCCCCCCCCCEEcc-ccccccccCCcCCCC
Confidence 4789999 89999999 699999999998754
No 64
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=95.93 E-value=0.0023 Score=46.18 Aligned_cols=16 Identities=31% Similarity=0.837 Sum_probs=13.7
Q ss_pred CCceecCCCcccccccc
Q 012811 37 SSWACKKCTFLNSPSRK 53 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~ 53 (456)
..|.|++|.|.|+. .+
T Consensus 16 ~tWVCpICsfsN~v-~s 31 (76)
T 2j9u_B 16 STWVCPICMVSNET-QG 31 (76)
T ss_dssp EEEECTTTCCEEEE-SS
T ss_pred cceECccccccCcC-cc
Confidence 57999999999997 44
No 65
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=94.70 E-value=0.0055 Score=62.64 Aligned_cols=27 Identities=33% Similarity=0.723 Sum_probs=0.0
Q ss_pred CceecCCCcccccccccccccccCCCCC
Q 012811 38 SWACKKCTFLNSPSRKSTCQICLTPSSS 65 (456)
Q Consensus 38 ~W~C~~Ct~~N~~s~~~~C~~C~~~~~~ 65 (456)
.=.|+.|||+|.+| ...|++||++=+.
T Consensus 180 ~~~CP~CTF~NHPs-l~~CEiCg~~L~~ 206 (566)
T 1w7p_D 180 ENICPACTFANHPQ-IGNCEICGHRLPN 206 (566)
T ss_dssp ----------------------------
T ss_pred CCCCCcccccCChh-hhcccccCCcCCC
Confidence 46799999999995 9999999988554
No 66
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=93.25 E-value=0.077 Score=34.96 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=28.0
Q ss_pred CCCCCcccCCCCCccccccccccccCCCCCCC
Q 012811 74 VSVPTWSCKACTFLNPYNNTSCELCNTRAPVS 105 (456)
Q Consensus 74 ~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~ 105 (456)
...+.|.|..|--+|++-...|.-|-+.|..=
T Consensus 7 ~~eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~W 38 (53)
T 2cr8_A 7 GSEDEWQCTECKKFNSPSKRYCFRCWALRKDW 38 (53)
T ss_dssp CCSCCEECSSSCCEECSSCCBCTTTCCBCCCC
T ss_pred CCcceeecccccccCCCccchhHHHHHhhccc
Confidence 45678999999999999999999999888753
No 67
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=92.37 E-value=0.042 Score=39.65 Aligned_cols=30 Identities=30% Similarity=0.630 Sum_probs=24.2
Q ss_pred CCCcccCCCCCccccccc---------cccccCCCCCCC
Q 012811 76 VPTWSCKACTFLNPYNNT---------SCELCNTRAPVS 105 (456)
Q Consensus 76 ~~~W~C~~Ct~~N~~~~~---------~C~~C~~~~~~~ 105 (456)
...|.|+-|.|.|+..+. .|..||...+..
T Consensus 15 ~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~~~ 53 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYE 53 (76)
T ss_dssp CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCCHH
T ss_pred ccceECccccccCcCccccCCCCCCCCcccccCccCCHH
Confidence 458999999999987665 489999877744
No 68
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=88.81 E-value=0.19 Score=32.43 Aligned_cols=28 Identities=25% Similarity=0.646 Sum_probs=24.7
Q ss_pred CCcccCCCCCccccccccccccCCCCCC
Q 012811 77 PTWSCKACTFLNPYNNTSCELCNTRAPV 104 (456)
Q Consensus 77 ~~W~C~~Ct~~N~~~~~~C~~C~~~~~~ 104 (456)
+.|.|..|--+|++....|.-|-+.|..
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk~ 39 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALREN 39 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCSS
T ss_pred ceEecccccccCCCccchhhHHHhhccc
Confidence 6799999999999999999999888764
No 69
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=82.99 E-value=1.1 Score=29.54 Aligned_cols=27 Identities=33% Similarity=0.837 Sum_probs=24.1
Q ss_pred CCceecCCCcccccccccccccccCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSS 64 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~ 64 (456)
..|.|..|--.|++ ....|.-|-+-|.
T Consensus 10 D~WkC~~C~k~N~P-l~ryC~rCwaLRk 36 (53)
T 2cr8_A 10 DEWQCTECKKFNSP-SKRYCFRCWALRK 36 (53)
T ss_dssp CCEECSSSCCEECS-SCCBCTTTCCBCC
T ss_pred ceeecccccccCCC-ccchhHHHHHhhc
Confidence 67999999999999 6999999997763
No 70
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=82.38 E-value=1 Score=33.59 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=12.4
Q ss_pred cccccccccccCCCCCC
Q 012811 88 NPYNNTSCELCNTRAPV 104 (456)
Q Consensus 88 N~~~~~~C~~C~~~~~~ 104 (456)
=.-....|..|.++-.+
T Consensus 54 rkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 54 RREGTQNCPQCKTRYKR 70 (93)
T ss_dssp HHTSCSSCTTTCCCCCC
T ss_pred HhccCccccccCCcccc
Confidence 34456779999998764
No 71
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=76.14 E-value=1.2 Score=30.15 Aligned_cols=14 Identities=21% Similarity=0.947 Sum_probs=8.7
Q ss_pred CCceecCCCccccc
Q 012811 37 SSWACKKCTFLNSP 50 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~ 50 (456)
..|.|..|.|+=.+
T Consensus 2 ~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 2 KKYTCTVCGYIYDP 15 (54)
T ss_dssp CCEEETTTCCEECT
T ss_pred CceECCCCCeEECC
Confidence 45777777766443
No 72
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=75.38 E-value=1.9 Score=28.95 Aligned_cols=14 Identities=21% Similarity=0.767 Sum_probs=9.6
Q ss_pred CCceecCCCccccc
Q 012811 37 SSWACKKCTFLNSP 50 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~ 50 (456)
..|.|..|-|+=.+
T Consensus 2 ~~y~C~~CGyvYd~ 15 (52)
T 1e8j_A 2 DIYVCTVCGYEYDP 15 (52)
T ss_dssp CCEECSSSCCCCCT
T ss_pred CcEEeCCCCeEEcC
Confidence 46777777777554
No 73
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=75.09 E-value=1.3 Score=28.92 Aligned_cols=14 Identities=21% Similarity=0.821 Sum_probs=8.6
Q ss_pred CCceecCCCccccc
Q 012811 37 SSWACKKCTFLNSP 50 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~ 50 (456)
..|.|..|.|+=.+
T Consensus 3 ~~y~C~vCGyvyd~ 16 (46)
T 6rxn_A 3 QKYVCNVCGYEYDP 16 (46)
T ss_dssp CCEEETTTCCEECG
T ss_pred CEEECCCCCeEEeC
Confidence 45666666666554
No 74
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=73.06 E-value=13 Score=27.36 Aligned_cols=61 Identities=16% Similarity=0.366 Sum_probs=36.8
Q ss_pred ccCCCCCCCCceecCCCcccccccccccccccCCC-------C---CCC---CCCCCCCCCCCcccCCCCCcccc
Q 012811 29 LRTRGSSMSSWACKKCTFLNSPSRKSTCQICLTPS-------S---SFS---PPSKSSVSVPTWSCKACTFLNPY 90 (456)
Q Consensus 29 ~~~~~~~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~-------~---~~~---~~~~~~~~~~~W~C~~Ct~~N~~ 90 (456)
..++.+....=.|.+|-..-.. ....|-+|+.-- . ... ...-.+.....|+|..|-.+|..
T Consensus 6 ~~~~e~~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lL 79 (89)
T 1wil_A 6 SGPREPVVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLL 79 (89)
T ss_dssp CCSCCCCCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSS
T ss_pred cCcccCCCCCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhh
Confidence 3444444456689999755555 378899998651 1 111 11111234568999999888764
No 75
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=72.36 E-value=6.5 Score=26.31 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=6.1
Q ss_pred cccccccCC
Q 012811 54 STCQICLTP 62 (456)
Q Consensus 54 ~~C~~C~~~ 62 (456)
-.|.+||--
T Consensus 4 y~C~~CGyv 12 (52)
T 1e8j_A 4 YVCTVCGYE 12 (52)
T ss_dssp EECSSSCCC
T ss_pred EEeCCCCeE
Confidence 468888754
No 76
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=72.23 E-value=1.8 Score=27.97 Aligned_cols=27 Identities=30% Similarity=0.800 Sum_probs=23.6
Q ss_pred CCceecCCCcccccccccccccccCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSS 64 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~ 64 (456)
..|.|..|--.|++ ....|.-|-+-|.
T Consensus 12 D~WkC~~C~~~N~P-l~r~C~rCw~LRk 38 (46)
T 2c6a_A 12 DYWKCTSCNEMNPP-LPSHCNRCWALRE 38 (46)
T ss_dssp GCEECTTTCCEECS-SCSSCTTTCCCCS
T ss_pred ceEecccccccCCC-ccchhhHHHhhcc
Confidence 57999999999999 6899999987653
No 77
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=71.57 E-value=7.4 Score=26.85 Aligned_cols=50 Identities=16% Similarity=0.353 Sum_probs=30.1
Q ss_pred CCCCceecCCCcccccccccccccccCCCCCCCCCC-CCCCCCCCcccCCCCCc
Q 012811 35 SMSSWACKKCTFLNSPSRKSTCQICLTPSSSFSPPS-KSSVSVPTWSCKACTFL 87 (456)
Q Consensus 35 ~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~-~~~~~~~~W~C~~Ct~~ 87 (456)
....+.|.+|.- .. ..+.|..|...-...=..+ -.....+.|.|+.|...
T Consensus 6 d~~~~~C~vC~~--~g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKD--GG-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCC--CS-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCC--CC-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 335688999974 34 4789999986532211110 11122468999999753
No 78
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.52 E-value=1.9 Score=28.80 Aligned_cols=25 Identities=24% Similarity=0.753 Sum_probs=20.6
Q ss_pred CCcccCCCCCccccccccccccCCC
Q 012811 77 PTWSCKACTFLNPYNNTSCELCNTR 101 (456)
Q Consensus 77 ~~W~C~~Ct~~N~~~~~~C~~C~~~ 101 (456)
....|+.|...|+...+.|.-||..
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 3578888888888888888888865
No 79
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.73 E-value=3.6 Score=27.93 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=31.3
Q ss_pred CCCCCCCCceecCCCcccccccccccccccCCCCCCCCC-CCCCCCCCCcccCCCC
Q 012811 31 TRGSSMSSWACKKCTFLNSPSRKSTCQICLTPSSSFSPP-SKSSVSVPTWSCKACT 85 (456)
Q Consensus 31 ~~~~~~~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~-~~~~~~~~~W~C~~Ct 85 (456)
+.|.....+.|.+|.-. . ..+.|..|...-...=.. +-.....+.|.|+.|.
T Consensus 2 s~g~~~~~~~C~vC~~~--g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 2 SSGSSGHEDFCSVCRKS--G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CCCCCSSCCSCSSSCCS--S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCcCCCCCCCccCCCC--C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 34555577999999864 3 468899998552211000 0011224689999985
No 80
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=69.06 E-value=2 Score=28.85 Aligned_cols=13 Identities=23% Similarity=0.769 Sum_probs=8.7
Q ss_pred CceecCCCccccc
Q 012811 38 SWACKKCTFLNSP 50 (456)
Q Consensus 38 ~W~C~~Ct~~N~~ 50 (456)
.|.|..|-|+=.+
T Consensus 2 ~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 2 KLSCKICGYIYDE 14 (52)
T ss_dssp EEEESSSSCEEET
T ss_pred cEEeCCCCeEECC
Confidence 5777777777433
No 81
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=68.59 E-value=3.7 Score=30.72 Aligned_cols=19 Identities=21% Similarity=0.688 Sum_probs=12.3
Q ss_pred CCCCCCCceecCCCccccc
Q 012811 32 RGSSMSSWACKKCTFLNSP 50 (456)
Q Consensus 32 ~~~~~~~W~C~~Ct~~N~~ 50 (456)
.+.....|.|..|-|+=.+
T Consensus 29 ~~~~m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 29 GGKAYLKWICITCGHIYDE 47 (87)
T ss_dssp ---CCCEEEETTTTEEEET
T ss_pred cccCCceEECCCCCeEecC
Confidence 4445568999999988444
No 82
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=66.32 E-value=6.9 Score=28.82 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=11.1
Q ss_pred CCceecCCCccccc
Q 012811 37 SSWACKKCTFLNSP 50 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~ 50 (456)
..|.|..|-|+=.+
T Consensus 26 ~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 26 KLFRCIQCGFEYDE 39 (81)
T ss_dssp CEEEETTTCCEEET
T ss_pred ceEEeCCCCEEEcC
Confidence 57999999988544
No 83
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=66.17 E-value=2.1 Score=37.73 Aligned_cols=26 Identities=15% Similarity=0.553 Sum_probs=14.2
Q ss_pred CCcccCCCCCcccccc-ccccccCCCC
Q 012811 77 PTWSCKACTFLNPYNN-TSCELCNTRA 102 (456)
Q Consensus 77 ~~W~C~~Ct~~N~~~~-~~C~~C~~~~ 102 (456)
..|.|..|.|.=.... +.|.+|+.++
T Consensus 170 ~~~~C~~CG~i~~g~~p~~CP~C~~~k 196 (202)
T 1yuz_A 170 KFHLCPICGYIHKGEDFEKCPICFRPK 196 (202)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCBG
T ss_pred cEEEECCCCCEEcCcCCCCCCCCCCCh
Confidence 3566666666522221 4677776654
No 84
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=64.48 E-value=2.4 Score=36.24 Aligned_cols=28 Identities=14% Similarity=0.495 Sum_probs=18.7
Q ss_pred CCCcccCCCCCcccccc-ccccccCCCCC
Q 012811 76 VPTWSCKACTFLNPYNN-TSCELCNTRAP 103 (456)
Q Consensus 76 ~~~W~C~~Ct~~N~~~~-~~C~~C~~~~~ 103 (456)
...|.|+.|.|.=.... ..|.+|+.|+.
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCGAPKE 164 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCBGG
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCCCCHH
Confidence 35788888888533222 37999987754
No 85
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=64.27 E-value=6.7 Score=28.04 Aligned_cols=14 Identities=21% Similarity=0.990 Sum_probs=10.5
Q ss_pred CCceecCCCccccc
Q 012811 37 SSWACKKCTFLNSP 50 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~ 50 (456)
..|.|..|-|+=.+
T Consensus 6 ~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 6 GKYECEACGYIYEP 19 (70)
T ss_dssp SCEEETTTCCEECT
T ss_pred ceEEeCCCCEEEcC
Confidence 46999999887444
No 86
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=60.99 E-value=2.7 Score=36.66 Aligned_cols=26 Identities=19% Similarity=0.764 Sum_probs=13.4
Q ss_pred CcccCCCCCcccc-cc-ccccccCCCCC
Q 012811 78 TWSCKACTFLNPY-NN-TSCELCNTRAP 103 (456)
Q Consensus 78 ~W~C~~Ct~~N~~-~~-~~C~~C~~~~~ 103 (456)
.|.|..|.|.=.. .. ..|.+|+.++.
T Consensus 155 ~~~C~~CG~~~~g~~~p~~CP~C~~~k~ 182 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPELCPACAHPKA 182 (191)
T ss_dssp EEEETTTCCEEEEEECCSBCTTTCCBGG
T ss_pred eEEECCCCCEeeCCCCCCCCCCCcCCHH
Confidence 4666666665211 01 15777766543
No 87
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=59.43 E-value=3.4 Score=36.05 Aligned_cols=28 Identities=21% Similarity=0.889 Sum_probs=19.3
Q ss_pred CCceecCCCccccc-ccccccccccCCCC
Q 012811 37 SSWACKKCTFLNSP-SRKSTCQICLTPSS 64 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~-s~~~~C~~C~~~~~ 64 (456)
..|.|..|.|+=.. ..-..|.+|+.++.
T Consensus 154 ~~~~C~~CG~~~~g~~~p~~CP~C~~~k~ 182 (191)
T 1lko_A 154 TKWRCRNCGYVHEGTGAPELCPACAHPKA 182 (191)
T ss_dssp EEEEETTTCCEEEEEECCSBCTTTCCBGG
T ss_pred ceEEECCCCCEeeCCCCCCCCCCCcCCHH
Confidence 37999999988321 00138999998754
No 88
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=59.39 E-value=3.3 Score=29.08 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=32.9
Q ss_pred CCCCceecCCCcc---cccccccccccccCCCCC----CCCCCCCCCCCCCcccCCCCCcccc
Q 012811 35 SMSSWACKKCTFL---NSPSRKSTCQICLTPSSS----FSPPSKSSVSVPTWSCKACTFLNPY 90 (456)
Q Consensus 35 ~~~~W~C~~Ct~~---N~~s~~~~C~~C~~~~~~----~~~~~~~~~~~~~W~C~~Ct~~N~~ 90 (456)
......|.+|.-- +.. ..+.|..|...-.. ++.........+.|.|+.|...+..
T Consensus 3 ~~~~~~C~vC~~~~~~~~~-~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPN-EMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTB-CEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCC-CEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 3456899999865 235 57899999865321 1110000012468999999876543
No 89
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=59.12 E-value=3.4 Score=35.31 Aligned_cols=28 Identities=18% Similarity=0.604 Sum_probs=20.1
Q ss_pred CCceecCCCcccccccccccccccCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSS 64 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~ 64 (456)
..|.|..|.|+=....-..|.+|+.|+.
T Consensus 137 ~~~~C~~CG~i~~~~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 137 KVYICPICGYTAVDEAPEYCPVCGAPKE 164 (170)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCCBGG
T ss_pred CeeEeCCCCCeeCCCCCCCCCCCCCCHH
Confidence 6799999988733212348999998754
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=59.03 E-value=24 Score=26.40 Aligned_cols=50 Identities=24% Similarity=0.418 Sum_probs=29.7
Q ss_pred CCceecCCCcccccccccccccccCCCCCCCC-CCCCCCCCCCcccCCCCCccc
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFSP-PSKSSVSVPTWSCKACTFLNP 89 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~-~~~~~~~~~~W~C~~Ct~~N~ 89 (456)
..+.|.+|.-- . ..+.|..|...-...=. ++-.....+.|.|+.|.....
T Consensus 24 n~~~C~vC~~~--g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 24 SATICRVCQKP--G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSCCSSSCSS--S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCcCcCcCCC--C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 45789999854 3 46889988755211100 000112346899999987643
No 91
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.92 E-value=9.1 Score=28.92 Aligned_cols=50 Identities=18% Similarity=0.477 Sum_probs=29.0
Q ss_pred CCceecCCCcccccccccccccccCCCCCCCCCCC-CCCCCCCcccCCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFSPPSK-SSVSVPTWSCKACTF 86 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~-~~~~~~~W~C~~Ct~ 86 (456)
..+.|.+|.-.......+.|..|...-...=..+. .....+.|.|+.|..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 45688888765532257899998864321101100 112246899999964
No 92
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=56.44 E-value=4.6 Score=28.89 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=4.7
Q ss_pred cccccccC
Q 012811 54 STCQICLT 61 (456)
Q Consensus 54 ~~C~~C~~ 61 (456)
-.|.+||-
T Consensus 8 y~C~vCGy 15 (70)
T 1dx8_A 8 YECEACGY 15 (70)
T ss_dssp EEETTTCC
T ss_pred EEeCCCCE
Confidence 45666663
No 93
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=56.09 E-value=4.4 Score=30.28 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=7.6
Q ss_pred cccccccccCCCC
Q 012811 90 YNNTSCELCNTRA 102 (456)
Q Consensus 90 ~~~~~C~~C~~~~ 102 (456)
+..+.|.+|+.++
T Consensus 66 PddW~CPvCga~K 78 (87)
T 1s24_A 66 PDDWCCPDCGATK 78 (87)
T ss_dssp CTTCCCSSSCCCG
T ss_pred CCCCCCCCCCCCH
Confidence 3445677776654
No 94
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=55.26 E-value=4.7 Score=27.34 Aligned_cols=14 Identities=29% Similarity=0.971 Sum_probs=9.5
Q ss_pred CCceecCCCccccc
Q 012811 37 SSWACKKCTFLNSP 50 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~ 50 (456)
..|.|..|-|+=.+
T Consensus 2 ~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 2 RKWQCVVCGFIYDE 15 (55)
T ss_dssp CEEEETTTCCEEET
T ss_pred CcEEeCCCCeEECC
Confidence 46777777777544
No 95
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=54.00 E-value=4.5 Score=29.81 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=8.1
Q ss_pred cccccccccCCCCC
Q 012811 90 YNNTSCELCNTRAP 103 (456)
Q Consensus 90 ~~~~~C~~C~~~~~ 103 (456)
+..+.|.+|+.++.
T Consensus 58 PddW~CPvCga~K~ 71 (81)
T 2kn9_A 58 PDDWSCPDCGAAKS 71 (81)
T ss_dssp CTTCCCTTTCCCGG
T ss_pred CCCCcCCCCCCCHH
Confidence 34556777776543
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=53.93 E-value=16 Score=28.50 Aligned_cols=56 Identities=16% Similarity=0.462 Sum_probs=32.8
Q ss_pred CceecCCCcccccccccccccccCCCCCCCCC-CCCCCCCCCcccCCCCCccccccccccccCCC
Q 012811 38 SWACKKCTFLNSPSRKSTCQICLTPSSSFSPP-SKSSVSVPTWSCKACTFLNPYNNTSCELCNTR 101 (456)
Q Consensus 38 ~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~-~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~ 101 (456)
+=.|.+|.-.-.....+.|..|...-...=.. .........|.|+.|. .|.+|+..
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~--------~C~~C~~~ 63 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK--------VCQNCKQS 63 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC--------CCTTTCCC
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC--------cccccCcc
Confidence 34688886544321347888888664321111 1111234689999997 58888754
No 97
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=53.66 E-value=31 Score=29.45 Aligned_cols=57 Identities=19% Similarity=0.408 Sum_probs=33.4
Q ss_pred CCceecCCCcccccccccccccccCCCCCCCC-CCCCCCCCCCcccCCCCCcccccc-cccc
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFSP-PSKSSVSVPTWSCKACTFLNPYNN-TSCE 96 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~-~~~~~~~~~~W~C~~Ct~~N~~~~-~~C~ 96 (456)
..+.|..|. ... ....|..|...-...=. +.-.....+.|.|+.|.-.+.+.. ..|.
T Consensus 3 ~~~~C~~C~--~~g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~~~e~dc~ 61 (184)
T 3o36_A 3 NEDWCAVCQ--NGG-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCD 61 (184)
T ss_dssp SCSSCTTTC--CCS-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSCSSCCGGG
T ss_pred CCCccccCC--CCC-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCccccccccccc
Confidence 346799998 445 57889998854221111 011112245799999997775543 3354
No 98
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.43 E-value=34 Score=24.75 Aligned_cols=8 Identities=38% Similarity=1.414 Sum_probs=7.2
Q ss_pred CcccCCCC
Q 012811 78 TWSCKACT 85 (456)
Q Consensus 78 ~W~C~~Ct 85 (456)
.|.|+.|.
T Consensus 68 ~W~C~~C~ 75 (77)
T 2e6s_A 68 YWYCPSCK 75 (77)
T ss_dssp CCCCTTTC
T ss_pred CcCCcCcc
Confidence 79999996
No 99
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=49.29 E-value=13 Score=26.16 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=26.9
Q ss_pred CCceecCCCcccccccccccccccCCCC----CCCCCCCCCCCCCCcccCCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSS----SFSPPSKSSVSVPTWSCKACTF 86 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~----~~~~~~~~~~~~~~W~C~~Ct~ 86 (456)
..-.|.+|. +.. ..+.|..|...-. .++.. ....+.|.|+.|+-
T Consensus 11 ~~~~C~vC~--~~~-~ll~Cd~C~~~~H~~Cl~P~l~---~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCG--DGT-DVLRCTHCAAAFHWRCHFPAGT---SRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTS--CCT-TCEECSSSCCEECHHHHCTTTC---CCCSSSCCCTTTTT
T ss_pred CCCCcCCCC--CCC-eEEECCCCCCceecccCCCccC---cCCCCCEECccccC
Confidence 345699996 445 5788999975521 11111 12245799999974
No 100
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=48.98 E-value=7.8 Score=34.03 Aligned_cols=27 Identities=22% Similarity=0.699 Sum_probs=17.2
Q ss_pred CCCceecCCCcccccccc-cccccccCCC
Q 012811 36 MSSWACKKCTFLNSPSRK-STCQICLTPS 63 (456)
Q Consensus 36 ~~~W~C~~Ct~~N~~s~~-~~C~~C~~~~ 63 (456)
...|.|..|.|+=.. .. -.|.+|+.++
T Consensus 169 ~~~~~C~~CG~i~~g-~~p~~CP~C~~~k 196 (202)
T 1yuz_A 169 DKFHLCPICGYIHKG-EDFEKCPICFRPK 196 (202)
T ss_dssp CCEEECSSSCCEEES-SCCSBCTTTCCBG
T ss_pred CcEEEECCCCCEEcC-cCCCCCCCCCCCh
Confidence 367999999988332 12 3566666553
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=46.59 E-value=13 Score=29.12 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=25.1
Q ss_pred CCceecCCC------c--ccccccccccccccCCCCCCCCCC-CCCCCCCCcccCCCC
Q 012811 37 SSWACKKCT------F--LNSPSRKSTCQICLTPSSSFSPPS-KSSVSVPTWSCKACT 85 (456)
Q Consensus 37 ~~W~C~~Ct------~--~N~~s~~~~C~~C~~~~~~~~~~~-~~~~~~~~W~C~~Ct 85 (456)
..|.|+.|. - .|.. ..+.|..|...-...=..+ -.....+.|.|+.|.
T Consensus 54 ~~W~C~~C~~C~vC~~~~~~~~-~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 54 LRWQCIECKTCSSCRDQGKNAD-NMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp SCCCCTTTCCBTTTCCCCCTTC-CCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred cccccccCCccccccCcCCCcc-ceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCC
Confidence 579888773 1 2334 4667777764421100000 011224579999995
No 102
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=46.16 E-value=16 Score=25.57 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=29.0
Q ss_pred CCceecCCCcccccccccccccccCCCCCCCCCC-CCCCCCCCcccCCCCCcc
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFSPPS-KSSVSVPTWSCKACTFLN 88 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~-~~~~~~~~W~C~~Ct~~N 88 (456)
..|.|.+|.-- . ..+.|..|...-...=..+ -.....+.|.|+.|...+
T Consensus 7 ~~~~C~vC~~~--g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDG--G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCC--S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCCC--C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 56899999853 4 4789999886422110110 011223689999886543
No 103
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=45.48 E-value=8.9 Score=25.92 Aligned_cols=25 Identities=32% Similarity=0.753 Sum_probs=21.2
Q ss_pred CCCcccCCCCCccccccccccccCC
Q 012811 76 VPTWSCKACTFLNPYNNTSCELCNT 100 (456)
Q Consensus 76 ~~~W~C~~Ct~~N~~~~~~C~~C~~ 100 (456)
-..+.|-.|.-.|++.+..|--||.
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~ 41 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCC
T ss_pred hchhhhccccCcCCcccccccCCCC
Confidence 3578899999999999999998884
No 104
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=45.44 E-value=19 Score=25.77 Aligned_cols=45 Identities=22% Similarity=0.471 Sum_probs=28.7
Q ss_pred CCceecCCCcccccccccccccccCCC------CCCCCCCCCCCCCCCcccCCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPS------SSFSPPSKSSVSVPTWSCKACTF 86 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~------~~~~~~~~~~~~~~~W~C~~Ct~ 86 (456)
..|.|.+|.-.........|..|..-- +.... .....|.|+.|.-
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~-----~~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAP-----PEEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCC-----CSSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccC-----CCCCCEEChhccC
Confidence 568999997664442478999997431 11111 1135899999964
No 105
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=45.26 E-value=21 Score=31.20 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCceecCCCcccccccccccccccCCCCCCCCC-CCCCCCCCCcccCCCCCccccc-ccccccc
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFSPP-SKSSVSVPTWSCKACTFLNPYN-NTSCELC 98 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~-~~~~~~~~~W~C~~Ct~~N~~~-~~~C~~C 98 (456)
..+.|..|. ... ....|..|...-...=.. +-.....+.|.|+.|.-.-... ...|+.+
T Consensus 6 ~~~~C~~C~--~~g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~~~~~~c~~~ 66 (207)
T 3u5n_A 6 NEDWCAVCQ--NGG-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNL 66 (207)
T ss_dssp SCSSBTTTC--CCE-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSCSSCCSCC--
T ss_pred CCCCCCCCC--CCC-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccccccccccccc
Confidence 457799997 344 478899998542211110 1111234679999998654333 2335444
No 106
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=45.02 E-value=12 Score=26.66 Aligned_cols=46 Identities=20% Similarity=0.425 Sum_probs=26.4
Q ss_pred CCceecCC-----Ccc-cccccccccccccCCCC----CCCCCCCCCCCCCCcccCCCC
Q 012811 37 SSWACKKC-----TFL-NSPSRKSTCQICLTPSS----SFSPPSKSSVSVPTWSCKACT 85 (456)
Q Consensus 37 ~~W~C~~C-----t~~-N~~s~~~~C~~C~~~~~----~~~~~~~~~~~~~~W~C~~Ct 85 (456)
..|.|..| .-. +.. ..+.|..|...-. .|+.. ..+.+..|.|+.|.
T Consensus 12 ~~w~C~~C~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~--~~P~g~~W~C~~C~ 67 (70)
T 3asl_A 12 VNRLCRVCACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLS--SVPSEDEWYCPECR 67 (70)
T ss_dssp TTSCCTTTSBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCS--SCCSSSCCCCTTTS
T ss_pred CCeECCCCCCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcC--CCCCCCCcCCcCcc
Confidence 56988866 222 445 5788988875421 11111 11223389999996
No 107
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=41.42 E-value=13 Score=25.13 Aligned_cols=25 Identities=32% Similarity=0.712 Sum_probs=22.8
Q ss_pred CCceecCCCcccccccccccccccCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTP 62 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~ 62 (456)
..+.|-.|--.|++ .+..|--||..
T Consensus 18 ~k~ICrkC~ARnp~-~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGALNPI-RATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECT-TCSSCTTTCCC
T ss_pred chhhhccccCcCCc-ccccccCCCCC
Confidence 57999999999999 69999999965
No 108
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.37 E-value=12 Score=24.83 Aligned_cols=25 Identities=20% Similarity=0.491 Sum_probs=16.8
Q ss_pred CCceecCCCcccccccccccccccCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTP 62 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~ 62 (456)
....|+.|-..|+. ....|.-||..
T Consensus 13 ~k~iCpkC~a~~~~-gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPW-GAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECT-TCSSCSSSSSC
T ss_pred CCccCCCCCCcCCC-CceecCCCCCc
Confidence 34677777777777 56667666654
No 109
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=39.37 E-value=13 Score=24.34 Aligned_cols=43 Identities=23% Similarity=0.458 Sum_probs=24.5
Q ss_pred ecCCCcccccccccccccccCCCC----CCCCCCCCCCCCCCcccCCCCC
Q 012811 41 CKKCTFLNSPSRKSTCQICLTPSS----SFSPPSKSSVSVPTWSCKACTF 86 (456)
Q Consensus 41 C~~Ct~~N~~s~~~~C~~C~~~~~----~~~~~~~~~~~~~~W~C~~Ct~ 86 (456)
|.+|.-.......+.|..|...-. .++.. ....+.|.|+.|..
T Consensus 3 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~---~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALY---EVPDGEWQCPACQP 49 (51)
T ss_dssp CTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC---SCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCEEECCCCChhhCcccCCCCcC---CCCCCcEECcCccc
Confidence 677765533225788998885421 11111 12235899999963
No 110
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=38.68 E-value=11 Score=29.62 Aligned_cols=48 Identities=21% Similarity=0.506 Sum_probs=24.4
Q ss_pred CCceecCCC------c-ccccccccccccccCCCCCCCCC-CCCCCCCCCcccCCCC
Q 012811 37 SSWACKKCT------F-LNSPSRKSTCQICLTPSSSFSPP-SKSSVSVPTWSCKACT 85 (456)
Q Consensus 37 ~~W~C~~Ct------~-~N~~s~~~~C~~C~~~~~~~~~~-~~~~~~~~~W~C~~Ct 85 (456)
..|.|+.|. - .|.. ..+.|..|...-...=.. +-.....+.|.|+.|.
T Consensus 51 ~~W~C~~C~~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 51 YKWQCIECKSCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp TTCCCGGGCCCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred CccCccccCccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECcccc
Confidence 469777652 2 2234 467777776442111000 0011224589999885
No 111
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=36.89 E-value=26 Score=25.37 Aligned_cols=48 Identities=19% Similarity=0.463 Sum_probs=25.1
Q ss_pred CCceecCCC-----c-ccccccccccccccCCCCCCCCCC--CCCCCCCCcccCCCC
Q 012811 37 SSWACKKCT-----F-LNSPSRKSTCQICLTPSSSFSPPS--KSSVSVPTWSCKACT 85 (456)
Q Consensus 37 ~~W~C~~Ct-----~-~N~~s~~~~C~~C~~~~~~~~~~~--~~~~~~~~W~C~~Ct 85 (456)
..|.|..|. . .+.. ..+.|..|...-...=..+ ...+....|.|+.|.
T Consensus 20 ~~W~C~~C~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 20 VNRLCRVCACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp TTSCCTTTSBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred CCCCCCCCcCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCcc
Confidence 569877663 2 2333 4677888875432111110 111223349999996
No 112
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=36.88 E-value=37 Score=23.21 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=28.1
Q ss_pred CCceecCCCcccccccccccccccCCCC----CCCCCCCCCCCCCCcccCCCCCc
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSS----SFSPPSKSSVSVPTWSCKACTFL 87 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~----~~~~~~~~~~~~~~W~C~~Ct~~ 87 (456)
..+.|.+|.- .. ....|..|...-. .++.. ....+.|.|+.|...
T Consensus 10 ~~~~C~vC~~--~g-~ll~CD~C~~~fH~~Cl~p~l~---~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQ--GG-EIILCDTCPRAYHMVCLDPDME---KAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSC--CS-SEEECSSSSCEEEHHHHCTTCC---SCCCSSCCCTTGGGG
T ss_pred CCCCCccCCC--CC-cEEECCCCChhhhhhccCCCCC---CCCCCceECcccccc
Confidence 4688999975 34 4788998876421 11110 122468999999754
No 113
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=36.11 E-value=56 Score=24.74 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=22.8
Q ss_pred eecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCC
Q 012811 40 ACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACT 85 (456)
Q Consensus 40 ~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct 85 (456)
.| +|...........|..|..--...=........+..|.|+.|.
T Consensus 30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred Ee-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 56 5766544325788998874321110111111112468888885
No 114
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=35.63 E-value=24 Score=27.40 Aligned_cols=60 Identities=17% Similarity=0.334 Sum_probs=31.5
Q ss_pred CCCceecCCCcccccccccccc--cccCCCCCCCCCCCCCCCCCCcccCCCC--CccccccccccccC
Q 012811 36 MSSWACKKCTFLNSPSRKSTCQ--ICLTPSSSFSPPSKSSVSVPTWSCKACT--FLNPYNNTSCELCN 99 (456)
Q Consensus 36 ~~~W~C~~Ct~~N~~s~~~~C~--~C~~~~~~~~~~~~~~~~~~~W~C~~Ct--~~N~~~~~~C~~C~ 99 (456)
.....|..|. +.. ..+.|. .|-..-...=..-. ....+.|.|+.|. .-.......|..|-
T Consensus 13 ~~~~~C~~C~--~~G-~ll~CD~~~Cp~~fH~~Cl~L~-~~P~g~W~Cp~c~C~~C~k~~~~~C~~Cp 76 (107)
T 4gne_A 13 MHEDYCFQCG--DGG-ELVMCDKKDCPKAYHLLCLNLT-QPPYGKWECPWHQCDECSSAAVSFCEFCP 76 (107)
T ss_dssp SSCSSCTTTC--CCS-EEEECCSTTCCCEECTGGGTCS-SCCSSCCCCGGGBCTTTCSBCCEECSSSS
T ss_pred CCCCCCCcCC--CCC-cEeEECCCCCCcccccccCcCC-cCCCCCEECCCCCCCcCCCCCCcCcCCCC
Confidence 3556799998 455 578888 67643211101111 1224689999773 22223334455554
No 115
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=32.52 E-value=31 Score=30.63 Aligned_cols=8 Identities=38% Similarity=1.431 Sum_probs=7.1
Q ss_pred CcccCCCC
Q 012811 78 TWSCKACT 85 (456)
Q Consensus 78 ~W~C~~Ct 85 (456)
.|.|+.|.
T Consensus 216 ~W~Cp~C~ 223 (226)
T 3ask_A 216 EWYCPECR 223 (226)
T ss_dssp CCCCGGGC
T ss_pred CCCCcCCc
Confidence 79999995
No 116
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=31.43 E-value=36 Score=23.36 Aligned_cols=31 Identities=16% Similarity=0.497 Sum_probs=19.1
Q ss_pred ccCCCCCccccccccccccCCCCCCCCCCCCCC
Q 012811 80 SCKACTFLNPYNNTSCELCNTRAPVSGLSSFED 112 (456)
Q Consensus 80 ~C~~Ct~~N~~~~~~C~~C~~~~~~~~~~~~~~ 112 (456)
.|+.|..--- ...|..||.+-.+.-...|+.
T Consensus 8 ~C~~CgvYTL--k~~CP~CG~~T~~~hParfSp 38 (60)
T 2apo_B 8 KCPKCGLYTL--KEICPKCGEKTVIPKPPKFSL 38 (60)
T ss_dssp ECTTTCCEES--SSBCSSSCSBCBCCCCCCCCT
T ss_pred eCCCCCCEec--cccCcCCCCcCCCCCCCCCCC
Confidence 5666643222 555888888877766555543
No 117
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=31.38 E-value=7.4 Score=29.34 Aligned_cols=49 Identities=24% Similarity=0.508 Sum_probs=39.8
Q ss_pred CCceecCCCcccccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCccccccccccccCCCCCCCC
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTSCELCNTRAPVSG 106 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~C~~C~~~~~~~~ 106 (456)
+.--|+.|-|.|-. ...|. ...-|-.|..+.-..+..|.+|+.+.|.--
T Consensus 27 G~~nCKsCWf~~k~--LV~C~-------------------dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LVECN-------------------NHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCSS--EEECS-------------------SCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred CcccChhhccccCC--eeeec-------------------chhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 56789999999887 35553 356899999999999999999999999754
No 118
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=30.78 E-value=36 Score=26.81 Aligned_cols=62 Identities=19% Similarity=0.382 Sum_probs=32.0
Q ss_pred ceecCCCcccccc------cccccccccC-------CCCCCCCCC-CCCCCCCCcccCCCCCccccccc-------cccc
Q 012811 39 WACKKCTFLNSPS------RKSTCQICLT-------PSSSFSPPS-KSSVSVPTWSCKACTFLNPYNNT-------SCEL 97 (456)
Q Consensus 39 W~C~~Ct~~N~~s------~~~~C~~C~~-------~~~~~~~~~-~~~~~~~~W~C~~Ct~~N~~~~~-------~C~~ 97 (456)
-.|..|-..+.+. ....|.+|+. .+|...... ........-.|..|.....+.+. .|.+
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lCNa 85 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNA 85 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEECHH
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCcchH
Confidence 4567776655551 1257888873 122111111 11122334577777776655544 5777
Q ss_pred cCC
Q 012811 98 CNT 100 (456)
Q Consensus 98 C~~ 100 (456)
|+.
T Consensus 86 Cgl 88 (115)
T 4hc9_A 86 CGL 88 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 119
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=29.47 E-value=19 Score=24.55 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=28.0
Q ss_pred CCceecCCCcccccccccccccccCCCCC----CCCCCCCCCCCCCcccCCCCCc
Q 012811 37 SSWACKKCTFLNSPSRKSTCQICLTPSSS----FSPPSKSSVSVPTWSCKACTFL 87 (456)
Q Consensus 37 ~~W~C~~Ct~~N~~s~~~~C~~C~~~~~~----~~~~~~~~~~~~~W~C~~Ct~~ 87 (456)
..+.|.+|.-- . ....|..|...-.. ++.. ....+.|.|+.|...
T Consensus 4 ~~~~C~vC~~~--g-~ll~Cd~C~~~fH~~Cl~ppl~---~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS--G-QLLMCDTCSRVYHLDCLDPPLK---TIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC--S-SCEECSSSSCEECGGGSSSCCS---SCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC--C-cEEEcCCCCcCEECCcCCCCcC---CCCCCceEChhccCh
Confidence 46889999864 4 47889988854211 1111 122358999999643
No 120
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=28.00 E-value=27 Score=26.01 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=31.1
Q ss_pred CCceecCCCcc---cccccccccccccCCCCCCCCCCCCCCCCCCcccCCCCCcccc
Q 012811 37 SSWACKKCTFL---NSPSRKSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPY 90 (456)
Q Consensus 37 ~~W~C~~Ct~~---N~~s~~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~ 90 (456)
..+.|.+|.-. +.. ..+.|..|...-...=..... ...+.|.|+.|...+..
T Consensus 24 ~~~~C~vC~~~~s~~~~-~ll~CD~C~~~fH~~Cl~p~~-vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 24 EDAVCSICMDGESQNSN-VILFCDMCNLAVHQECYGVPY-IPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCSSCCSSSSCSEE-EEEECSSSCCCCCHHHHTCSS-CCSSCCCCHHHHHHTTS
T ss_pred CCCcCCcCCCCCCCCCC-CEEECCCCCchhhcccCCCCc-cCCCceECccccCccch
Confidence 56899999754 455 579999998652100000000 12368999999765443
No 121
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=25.84 E-value=13 Score=25.48 Aligned_cols=12 Identities=33% Similarity=0.900 Sum_probs=6.4
Q ss_pred CcccCCCCCccc
Q 012811 78 TWSCKACTFLNP 89 (456)
Q Consensus 78 ~W~C~~Ct~~N~ 89 (456)
.|.|+.|...|.
T Consensus 33 ~W~C~~C~~~N~ 44 (59)
T 2yrc_A 33 LWACNFCYQRNQ 44 (59)
T ss_dssp EEECSSSCCEEE
T ss_pred EEEcccCCCcCC
Confidence 455555555553
No 122
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=25.82 E-value=61 Score=27.81 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=24.0
Q ss_pred ecCCCcccccccccccccccCCCCCCCCC-CCCCCCCCCcccCCCCCc
Q 012811 41 CKKCTFLNSPSRKSTCQICLTPSSSFSPP-SKSSVSVPTWSCKACTFL 87 (456)
Q Consensus 41 C~~Ct~~N~~s~~~~C~~C~~~~~~~~~~-~~~~~~~~~W~C~~Ct~~ 87 (456)
|..|.- .. ....|..|...-...=.. .-.....+.|.|+.|...
T Consensus 5 C~~C~~--~g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 5 CRVCQK--PG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp BTTTCC--CS-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CccCCC--CC-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 666652 23 467788887553211110 011123468999999765
No 123
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=24.93 E-value=11 Score=27.85 Aligned_cols=35 Identities=14% Similarity=0.376 Sum_probs=21.2
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCcccCCCCCcccccccc
Q 012811 53 KSTCQICLTPSSSFSPPSKSSVSVPTWSCKACTFLNPYNNTS 94 (456)
Q Consensus 53 ~~~C~~C~~~~~~~~~~~~~~~~~~~W~C~~Ct~~N~~~~~~ 94 (456)
.-.|..||...-.. +..+.|.|+.|.+.-...+..
T Consensus 27 ~y~Cp~CG~~~v~r-------~atGiW~C~~Cg~~~aggay~ 61 (83)
T 1vq8_Z 27 DHACPNCGEDRVDR-------QGTGIWQCSYCDYKFTGGSYK 61 (83)
T ss_dssp CEECSSSCCEEEEE-------EETTEEEETTTCCEEECCSSS
T ss_pred cCcCCCCCCcceec-------cCCCeEECCCCCCEecCCEec
Confidence 35677777532111 123579999998876665544
No 124
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.89 E-value=37 Score=25.18 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=29.3
Q ss_pred ceecCCCcccc---cccccccccccCCCCC----CCCCCCC-CCCCCCcccCCCCCccc
Q 012811 39 WACKKCTFLNS---PSRKSTCQICLTPSSS----FSPPSKS-SVSVPTWSCKACTFLNP 89 (456)
Q Consensus 39 W~C~~Ct~~N~---~s~~~~C~~C~~~~~~----~~~~~~~-~~~~~~W~C~~Ct~~N~ 89 (456)
=.|.+|.--+. . ..+.|..|...-.. |+..... ....+.|.|+.|.....
T Consensus 17 ~~C~vC~~~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 17 LACVVCRQMTVASGN-QLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CSCSSSCCCCCCTTC-CEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CcCCCCCCCCCCCCC-ceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 37999976532 4 46889988865321 1111000 12346899999986554
No 125
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=21.38 E-value=53 Score=23.30 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=27.9
Q ss_pred CCceecCCCcc---cccccccccccccCCCC----CCCCCCCCCCCCCCcccCCCCC
Q 012811 37 SSWACKKCTFL---NSPSRKSTCQICLTPSS----SFSPPSKSSVSVPTWSCKACTF 86 (456)
Q Consensus 37 ~~W~C~~Ct~~---N~~s~~~~C~~C~~~~~----~~~~~~~~~~~~~~W~C~~Ct~ 86 (456)
....|.+|.-. +.. ..+.|..|...-. .++. ...+.|.|+.|..
T Consensus 15 ~~~~C~vC~~~~s~~~~-~ll~CD~C~~~~H~~Cl~~~~-----vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSN-VILFCDMCNLAVHQECYGVPY-----IPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSS-CEEECSSSCCEEEHHHHTCSS-----CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCC-CEEECCCCCCccccccCCCCc-----CCCCCcCCccCcC
Confidence 45789999654 455 5789999976421 0111 1235899999864
Done!