Query 012812
Match_columns 456
No_of_seqs 379 out of 1361
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:34:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03144 Carbon catabolite rep 100.0 3E-119 7E-124 965.9 42.9 445 1-447 1-448 (606)
2 COG5239 CCR4 mRNA deadenylase, 100.0 6.6E-36 1.4E-40 299.0 10.0 180 253-446 30-220 (378)
3 KOG2338 Transcriptional effect 100.0 3.3E-33 7.2E-38 289.4 12.6 164 252-445 115-281 (495)
4 KOG0620 Glucose-repressible al 100.0 5.9E-31 1.3E-35 269.8 8.1 194 224-446 2-199 (361)
5 PLN03158 methionine aminopepti 99.7 1.3E-17 2.9E-22 173.6 5.4 71 63-134 10-95 (396)
6 TIGR03395 sphingomy sphingomye 99.5 6.2E-13 1.4E-17 133.1 15.1 156 254-447 1-170 (283)
7 KOG2738 Putative methionine am 99.3 7.5E-13 1.6E-17 130.6 4.2 68 63-135 7-75 (369)
8 smart00476 DNaseIc deoxyribonu 99.2 1.6E-10 3.5E-15 115.4 15.1 135 251-428 15-154 (276)
9 PRK05421 hypothetical protein; 99.2 5.8E-11 1.3E-15 117.4 11.5 139 250-446 40-178 (263)
10 PF03372 Exo_endo_phos: Endonu 99.1 1.4E-09 3.1E-14 101.2 13.8 88 257-365 1-95 (249)
11 PRK11756 exonuclease III; Prov 99.1 8.5E-10 1.8E-14 108.7 12.8 131 254-446 1-136 (268)
12 COG3568 ElsH Metal-dependent h 99.0 1.6E-09 3.4E-14 106.9 9.8 141 253-444 9-157 (259)
13 PTZ00297 pantothenate kinase; 98.9 1.5E-08 3.3E-13 120.3 15.0 157 250-445 7-178 (1452)
14 KOG2756 Predicted Mg2+-depende 98.8 3.2E-08 7E-13 97.1 12.8 137 251-445 97-233 (349)
15 TIGR00195 exoDNase_III exodeox 98.7 2.3E-07 4.9E-12 90.7 12.8 72 254-353 1-72 (254)
16 TIGR00633 xth exodeoxyribonucl 98.6 3.3E-07 7.2E-12 88.7 12.1 72 254-351 1-73 (255)
17 COG0708 XthA Exonuclease III [ 98.0 7.8E-06 1.7E-10 81.1 6.5 71 254-351 1-71 (261)
18 PRK13911 exodeoxyribonuclease 97.7 6.3E-05 1.4E-09 74.3 6.1 71 254-353 1-72 (250)
19 KOG3873 Sphingomyelinase famil 97.6 0.00015 3.2E-09 74.3 7.6 147 252-444 7-161 (422)
20 PRK15251 cytolethal distending 97.3 0.0026 5.6E-08 63.7 11.5 137 249-446 20-178 (271)
21 smart00128 IPPc Inositol polyp 96.8 0.022 4.7E-07 58.2 13.6 34 415-448 137-170 (310)
22 PF01753 zf-MYND: MYND finger; 96.8 0.0012 2.5E-08 46.2 2.8 34 67-107 2-35 (37)
23 COG2374 Predicted extracellula 90.1 2.7 5.8E-05 47.6 11.4 109 250-364 460-590 (798)
24 KOG1710 MYND Zn-finger and ank 88.1 0.32 6.9E-06 49.3 2.3 40 63-110 320-360 (396)
25 PF09889 DUF2116: Uncharacteri 79.9 1.6 3.5E-05 34.0 2.5 33 76-110 5-37 (59)
26 COG3021 Uncharacterized protei 69.2 18 0.00039 37.2 7.6 135 251-448 86-220 (309)
27 PF04438 zf-HIT: HIT zinc fing 67.7 4.6 0.0001 27.1 2.0 28 63-99 3-30 (30)
28 COG5239 CCR4 mRNA deadenylase, 65.0 4.5 9.8E-05 42.2 2.4 50 391-447 120-169 (378)
29 PRK00418 DNA gyrase inhibitor; 54.9 7.4 0.00016 30.7 1.5 28 73-100 5-35 (62)
30 KOG3612 PHD Zn-finger protein 52.5 4.4 9.4E-05 44.3 -0.2 39 65-113 530-568 (588)
31 PRK01343 zinc-binding protein; 49.5 8.9 0.00019 29.7 1.1 26 74-100 9-34 (57)
32 PF03884 DUF329: Domain of unk 46.6 7.6 0.00016 30.1 0.3 26 74-99 2-30 (57)
33 PF02069 Metallothio_Pro: Prok 42.5 13 0.00028 28.3 1.0 19 82-100 20-38 (52)
34 COG3350 Uncharacterized conser 38.4 17 0.00038 27.7 1.2 11 90-100 28-38 (53)
35 COG3024 Uncharacterized protei 27.3 32 0.00069 27.3 1.0 26 74-99 7-35 (65)
36 PF04181 RPAP2_Rtr1: Rtr1/RPAP 24.9 36 0.00079 27.6 1.0 12 90-101 59-70 (79)
37 COG4306 Uncharacterized protei 24.6 19 0.00041 32.3 -0.7 19 63-82 29-47 (160)
38 KOG0808 Carbon-nitrogen hydrol 24.3 64 0.0014 32.6 2.8 27 282-308 98-124 (387)
39 PF04945 YHS: YHS domain; Int 22.2 41 0.00089 24.4 0.8 11 90-100 25-35 (47)
40 PRK14810 formamidopyrimidine-D 21.9 84 0.0018 31.5 3.2 35 43-82 228-272 (272)
41 COG4068 Uncharacterized protei 20.6 41 0.00089 26.3 0.5 30 75-106 9-38 (64)
No 1
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=100.00 E-value=3.3e-119 Score=965.95 Aligned_cols=445 Identities=81% Similarity=1.321 Sum_probs=411.0
Q ss_pred CccEEEEeccCCCceeceeeeeEEEEecCCCCCCCCCCCCCCCCCCceeEEEEeeecCCCccccccCCCCCCcceecchh
Q 012812 1 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGC 80 (456)
Q Consensus 1 ~~~~~~~~l~~~~p~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~r~~~~~~~~~C~~~c~~~a~l~Cp~C 80 (456)
||+|||||||+|||||||||+|||++||+||+++++||||++|++|+||||||||+|+++++++|++|++++|+||||+|
T Consensus 1 ~~~~~~~~l~~~~pi~g~~~~p~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~w~r~~~~~~~~~c~~h~~~~a~lqCp~C 80 (606)
T PLN03144 1 MLSVVRVHLPSDIPIVGCELTPYVLLRRPDGTLTTDDVPESAPLDGYFLRYRWYRIQSDRKVAVCSVHPSEPATLQCVGC 80 (606)
T ss_pred CeeEEEEEcCCCCCeeeeeeEEEEEEEcCCCCcCcccCcccCCCCcceEEEEEEecCCCccceeEeecCCCcccccCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCceeecChHHhHHhHHHHHHHHHhhhhhcccCCCchhhcccCCCCCCCccccccCCCCCCCCCccCCCccccc
Q 012812 81 VKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYP 160 (456)
Q Consensus 81 ~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (456)
+|+|+++..||||||+|||++|++||.+|+.|+++.++||+|++++|++++++|+|.....++|+.++.+++|||+++||
T Consensus 81 ~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (606)
T PLN03144 81 VKAKLPVSKSYHCSPKCFSDAWRHHRVLHERAASAVRENGNEEDELFGRFNSSGSGVLSTSDSGSASSASLTNGSVPLYP 160 (606)
T ss_pred hhcCCCcCcceeeCHHHHHHHHHHHHHHHHHhhhhhcccCccccccccccCCCccccccccccccccccccccCcccccc
Confidence 99999878899999999999999999999999999999999999999999999999999888888888889999999999
Q ss_pred cccccCC---CCceEEEccceeecCCccCCCceEEEEEEEecCCCCCCCCCcceeeeccccCCCCCCCCCeeeeCCCCcc
Q 012812 161 AAVTRSG---GETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMN 237 (456)
Q Consensus 161 ~~~~~~~---~~~W~~vg~~~~YtPt~~DiG~~lkle~~~~~~~~~~~~g~~~~i~s~~v~p~p~p~~R~~i~~~~~~~~ 237 (456)
.+..+.. +++|++||++++|||+++|||+.|||||+|+++.++.+.|...++++.+|+|+|.|++|+|++++. .+
T Consensus 161 ~~~~~~~~~~~~~w~~vg~~~~y~p~~~d~g~~lk~~~~~~~~~~~~~~~~~~~~~t~~v~~~p~p~~R~~~~~~~--~~ 238 (606)
T PLN03144 161 SGIEQKTQVGGETWIEVGRSKTYTPTADDVGHVLKFECVVVDAETGLPVGHPQSILTSRVIPAPSPTPRRLIQVNG--LD 238 (606)
T ss_pred cccccccCCCCCceEEeCCCccccCChhhCCceEEEEEEEcccccCCCCccceeecccceecCCCCCCcceEEecc--cc
Confidence 9977666 899999999999999999999999999999999877778888899999999999999999999875 34
Q ss_pred ccccccCCCCCCCCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHH
Q 012812 238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAP 317 (456)
Q Consensus 238 ~~~~~~~~~~~~~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~ 317 (456)
.++|++++++..+.++|||||||||||.|+++++|+|||+++|+|+||+++|++||..|+|||||||||+.++|+++|.+
T Consensus 239 ~~~~~~~~~~~~~~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p 318 (606)
T PLN03144 239 GMGHLDLDGRTSSAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAP 318 (606)
T ss_pred cccccccccccCCCCCEEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHh
Confidence 56778887787888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCCeeEEeeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEE
Q 012812 318 ELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALI 397 (456)
Q Consensus 318 ~L~~~GY~g~~~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnVali 397 (456)
.|.++||.|+|.+|++.+++++..+.||||||||++||++++++.|+|++.++++++...+..+++++++|++++|||++
T Consensus 319 ~L~~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAli 398 (606)
T PLN03144 319 ELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALI 398 (606)
T ss_pred hhhhcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEE
Confidence 99999999999999876555666678999999999999999999999999888777666555567889999999999999
Q ss_pred EEeeecccCCCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHhh
Q 012812 398 VVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSSI 447 (456)
Q Consensus 398 v~Le~~~~~~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~~ 447 (456)
++||++.+.......++++.|+||||||+|+|+++|||++|++.|++++-
T Consensus 399 v~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~ 448 (606)
T PLN03144 399 VVLEAKFGNQGADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLE 448 (606)
T ss_pred EEEEEecccccccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHH
Confidence 99999754322222344678999999999999999999999999998743
No 2
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=100.00 E-value=6.6e-36 Score=298.99 Aligned_cols=180 Identities=36% Similarity=0.612 Sum_probs=147.9
Q ss_pred cEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeecc
Q 012812 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT 332 (456)
Q Consensus 253 ~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K~ 332 (456)
.|+|||||+||+.|+++++|+|. .|||+|.||+.+|++||..|+||||||||||...|++||.+.|..+||+++|.+|+
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s-~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~ 108 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYS-GWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKE 108 (378)
T ss_pred eeEEEehhhhhhhhccccccCCc-hhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEecCC
Confidence 79999999999999999999999 89999999999999999999999999999999999999999999999999999998
Q ss_pred Cccc-CCC--CCCcceeEEeEec----CceeEeEeEEEEccccccccccccCCchhhhhhhhhcc-cCcEE---EEEEee
Q 012812 333 NEVY-NGN--PHTIDGCATFFRR----DRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLV-KDNVA---LIVVLE 401 (456)
Q Consensus 333 ~~~~-~~~--~~~~dG~AIFyr~----srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~-~dnVa---liv~Le 401 (456)
+... +-. ...++||||||++ ||+.++-.....|...-... +. -.+...+++|++ ++|++ +++.|+
T Consensus 109 ~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~-er---~r~t~~~lnri~e~~~~~w~~l~~~l~ 184 (378)
T COG5239 109 RKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYY-ER---FRQTYILLNRIGEKDNIAWVCLFVGLF 184 (378)
T ss_pred CcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceee-hh---hhHHHHHHHHHhhhhhcchhheeeeec
Confidence 7321 112 2478999999999 66555544443333221111 11 123457889998 78999 888888
Q ss_pred ecccCCCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 012812 402 AKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSS 446 (456)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~ 446 (456)
++. .+..++|||||++|+|++++||+.|+.++++++
T Consensus 185 n~e---------~gd~~~va~Th~~w~~~~~dvk~iq~s~l~~~~ 220 (378)
T COG5239 185 NKE---------PGDTPYVANTHLPWDPKYRDVKLIQCSLLYREL 220 (378)
T ss_pred cCC---------CCCceeEEeccccccCCCCchheehhhHHHHHH
Confidence 764 356799999999999999999999999999874
No 3
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=100.00 E-value=3.3e-33 Score=289.45 Aligned_cols=164 Identities=38% Similarity=0.590 Sum_probs=143.2
Q ss_pred CcEEEEecccccCcc---CCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEE
Q 012812 252 GTFSVLSYNILSDVY---ATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 328 (456)
Q Consensus 252 ~~frVmSYNILad~Y---a~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~ 328 (456)
-.|+|||||||||.+ .++.+|+ |+..+|+|.+|.+.|+.||+.|+||||||||||.++|..++.+.|..+||.++|
T Consensus 115 f~ftvmSYNILAQ~l~~~~~r~~~~-~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~ 193 (495)
T KOG2338|consen 115 FDFTVMSYNILAQDLLRDIRRLYFP-ESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFF 193 (495)
T ss_pred cceEEEEehHhHHHHHHHhHHhhcc-CChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEE
Confidence 489999999999999 4456788 999999999999999999999999999999999999999999999999999988
Q ss_pred eeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCC
Q 012812 329 KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQG 408 (456)
Q Consensus 329 ~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~ 408 (456)
..+++. +.|||||||+.++|+++....+.|.... ..|..++||++++.|+.+.+.
T Consensus 194 ~r~t~~-------KthG~ai~w~~~~F~lv~~~~l~y~~~~----------------~~l~n~~NV~lvv~l~f~~~~-- 248 (495)
T KOG2338|consen 194 KRRTGT-------KTHGVAILWHSAKFKLVNHSELNYFDSG----------------SALANRDNVGLVVSLEFRLVD-- 248 (495)
T ss_pred EeccCC-------CCceEEEEEecccceecccchhhccccc----------------chhhcccceeEEEEEEecccC--
Confidence 877643 5799999999999999999999887321 012225899999999986432
Q ss_pred CCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHH
Q 012812 409 ADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLS 445 (456)
Q Consensus 409 ~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~ 445 (456)
. ..+.|+||||||+|||...++||.|+++||++
T Consensus 249 ---~-~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~ 281 (495)
T KOG2338|consen 249 ---E-SSQGILVANTHLLFNPSRSDVRLAQVYIILAE 281 (495)
T ss_pred ---c-ccCceEEEeeeeeecCcccchhhHHHHHHHHH
Confidence 1 24579999999999999999999999999987
No 4
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=99.97 E-value=5.9e-31 Score=269.80 Aligned_cols=194 Identities=46% Similarity=0.753 Sum_probs=160.0
Q ss_pred CCCCeeeeCCCCccccccccCCCCCCCCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEe
Q 012812 224 SPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCL 303 (456)
Q Consensus 224 ~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICL 303 (456)
..|+|+.++.. ...+...|+|||||||++.|+.+..|.|||.|++.|.||++.|+++|..++||||||
T Consensus 2 ~~~~~~~~~~~------------~~~~~~~~~v~s~n~l~~~~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icL 69 (361)
T KOG0620|consen 2 FWRDLISVSGK------------DVPQGETFTVLSYNILSQLYATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCL 69 (361)
T ss_pred ChhheeeccCC------------CccCCceEEeechhhhhhhhcccCCCcccchhhccHHHHHHHHHHHHhCCCcceeec
Confidence 35778876652 112334899999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHhhhHHhHhhcCCeeEEeeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhh
Q 012812 304 QEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKK 383 (456)
Q Consensus 304 QEVd~~~~~d~~~~~L~~~GY~g~~~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~ 383 (456)
||| +.|++||.+.|...||.|.|.+|++ +...+.+..||||||||+++|+++.+..++||+.++.+.+. ..
T Consensus 70 qev--~~~~~~~~p~l~~~gY~g~~~~k~~-~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~------~~ 140 (361)
T KOG0620|consen 70 QEV--DRYHDFFSPELEASGYSGIFIEKTR-MGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPP------NI 140 (361)
T ss_pred chh--hHHHHHccchhhhcCCcceeecccc-cchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcch------hH
Confidence 999 7889999999998899999999987 54455667999999999999999999999999987544211 23
Q ss_pred hhhhhcc-cCcEEE-EEEeeecccCCCCCCCCCCceEE--EEEeccCCCCCChhhHHHHHHHHHHHh
Q 012812 384 NALNRLV-KDNVAL-IVVLEAKFSNQGADTPGKRQLLC--VANTHVNVHQELKDVKLWQVLIILLSS 446 (456)
Q Consensus 384 ~~~~R~~-~dnVal-iv~Le~~~~~~~~~~~~~~~~l~--VaNTHL~~~P~~~dVRL~Q~~~Ll~~~ 446 (456)
..++|++ +||++. ++.|+....+ ...++ ++|||++|+|.++++|++|+.++++++
T Consensus 141 ~~~~~~~~~d~~~~~l~~L~~~~~~--------~~~~~~~~~n~h~~~~~~~~~vkl~qv~~l~~~~ 199 (361)
T KOG0620|consen 141 AQLNRLTTLDNSGNKLVSLKAELGN--------MVSLPHLLLNTHILWDLPYEDVKLFQVLTLLLEL 199 (361)
T ss_pred HHHHhhhccccccchhhhhhhhcCC--------ceeeccccccceeccCCCccchHHHHHHHHhhcc
Confidence 5566766 788887 5777764321 11122 489999999999999999999999883
No 5
>PLN03158 methionine aminopeptidase; Provisional
Probab=99.69 E-value=1.3e-17 Score=173.65 Aligned_cols=71 Identities=31% Similarity=0.665 Sum_probs=57.3
Q ss_pred ccccCCCCCCcceecchhhccCCCCCceeecChHHhHHhHHHHHHHHHhhhhh----cc-----------cCCCchhhcc
Q 012812 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASA----VN-----------ENGNEEEELF 127 (456)
Q Consensus 63 ~~C~~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H~~~~~~----~~-----------~~g~~~~~~~ 127 (456)
.+|+ +|+++|+||||+|+|+|+++..||||||+|||++|++||.+|+.++.. .. +.|..-+++|
T Consensus 10 ~~c~-~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (396)
T PLN03158 10 LACA-RCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSVHTKAKLSSIGQNSDAPAEGWLYCLKKGQARTSKL 88 (396)
T ss_pred cccc-CCCCcccccCccchhcCCCCCCceeECHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccccccCCC
Confidence 4585 999999999999999999877899999999999999999999875521 10 1122237889
Q ss_pred cCCCCCC
Q 012812 128 GRFNSTG 134 (456)
Q Consensus 128 ~~~~~~~ 134 (456)
+.|+++|
T Consensus 89 ~~~~~~~ 95 (396)
T PLN03158 89 PDFDWTG 95 (396)
T ss_pred CCCCCCc
Confidence 9998887
No 6
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.48 E-value=6.2e-13 Score=133.15 Aligned_cols=156 Identities=16% Similarity=0.104 Sum_probs=99.9
Q ss_pred EEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHh-hcCCeeEEeecc
Q 012812 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQALYKRKT 332 (456)
Q Consensus 254 frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~-~~GY~g~~~~K~ 332 (456)
|+||||||..-.+. . .+...|+.|..+|.+.+...++||||||||......+.+...|+ .+.|...+..+.
T Consensus 1 lkVmtyNv~~l~~~---~-----~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~g~~ 72 (283)
T TIGR03395 1 IKILSHNVYMLSTN---L-----YPNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVIGRS 72 (283)
T ss_pred CeEEEEEeeeeccc---c-----cCCccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHhhCCceEeecccc
Confidence 68999999752111 1 13346899999999999999999999999976664444555664 455554333221
Q ss_pred Cc-------ccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeeccc
Q 012812 333 NE-------VYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFS 405 (456)
Q Consensus 333 ~~-------~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~ 405 (456)
.. .+........|++|+ |||++++.....|..... .+ ++ ...-++.+.++.
T Consensus 73 ~~g~~~~~g~~~~~~~~~~G~~iL---Sr~Pi~~~~~~~f~~~~~------------~d---~~-~~kg~l~a~i~~--- 130 (283)
T TIGR03395 73 KKGWDKTLGNYSSSALEDGGVAIV---SKWPIEEKIQYIFNKGCG------------AD---NL-SNKGFAYVKINK--- 130 (283)
T ss_pred cccchhccccccccCccCCEEEEE---ECCCccccEEEEccCCCC------------Cc---cc-cCCceEEEEEec---
Confidence 10 000111235799999 999999887776653210 00 00 011334455543
Q ss_pred CCCCCCCCCCceEEEEEeccCCCC------CChhhHHHHHHHHHHHhh
Q 012812 406 NQGADTPGKRQLLCVANTHVNVHQ------ELKDVKLWQVLIILLSSI 447 (456)
Q Consensus 406 ~~~~~~~~~~~~l~VaNTHL~~~P------~~~dVRL~Q~~~Ll~~~~ 447 (456)
.++.|.|+||||.+.. ....+|..|+..|.+.+.
T Consensus 131 --------~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~ 170 (283)
T TIGR03395 131 --------NGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFID 170 (283)
T ss_pred --------CCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHh
Confidence 2467999999999853 126899999999988764
No 7
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7.5e-13 Score=130.60 Aligned_cols=68 Identities=31% Similarity=0.755 Sum_probs=56.8
Q ss_pred cccc-CCCCCCcceecchhhccCCCCCceeecChHHhHHhHHHHHHHHHhhhhhcccCCCchhhcccCCCCCCC
Q 012812 63 AVCS-VHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGS 135 (456)
Q Consensus 63 ~~C~-~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H~~~~~~~~~~g~~~~~~~~~~~~~~~ 135 (456)
.+|. .+|+++|+||||+|+|+|++ .+|||+|+|||.+|..||.+|..+.. ....| ++++++.|+++|+
T Consensus 7 ~~c~~~~c~~~a~l~Cp~c~~~~i~--~~~fc~q~cf~~~w~~hK~~h~~~~~-~~~~g--~~~p~p~~~~~g~ 75 (369)
T KOG2738|consen 7 ISCEGLQCGSEASLQCPTCLKLGIK--SAYFCAQECFKNSWLSHKKLHRKALR-IRKEG--QYNPWPKFRFTGP 75 (369)
T ss_pred ceeeccccCChhhccCchhhhcCCC--cccccCchhhhcchhhhhhhcccchh-hhhhc--cCCCCccccccCC
Confidence 4576 89999999999999999998 48999999999999999999986632 22222 3779999999983
No 8
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.23 E-value=1.6e-10 Score=115.41 Aligned_cols=135 Identities=15% Similarity=0.244 Sum_probs=93.4
Q ss_pred CCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHh--hhHHhHhh---cCCe
Q 012812 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEE--FFAPELDK---HGYQ 325 (456)
Q Consensus 251 ~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d--~~~~~L~~---~GY~ 325 (456)
...++||||||+. +. .....|..|+..|++.|. ++|||++|||...+..+ .+.+.|.+ .+|.
T Consensus 15 ~~~l~I~SfNIr~--fg---------d~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~ 81 (276)
T smart00476 15 AASLRICAFNIQS--FG---------DSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYS 81 (276)
T ss_pred CCcEEEEEEECcc--cC---------CccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCce
Confidence 3579999999983 21 234579999999999998 77999999997655433 12233332 2577
Q ss_pred eEEeeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeeccc
Q 012812 326 ALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFS 405 (456)
Q Consensus 326 g~~~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~ 405 (456)
.+...+.+. ....|-.|+|||++||++++...+ .+.. . .+.+++.| ...++.|+.+.+
T Consensus 82 ~v~s~r~gr-----~~~~E~~a~~Yr~drv~v~~~~~f--~d~~---------~-~~~~~F~R-----eP~~~~F~~~~~ 139 (276)
T smart00476 82 YVSSEPLGR-----NSYKEQYLFLYRSDLVSVLDSYLY--DDGC---------E-CGNDVFSR-----EPFVVKFSSPST 139 (276)
T ss_pred EEecCCCCC-----CCCCEEEEEEEecceEEEccccee--cCCC---------C-Cccccccc-----cceEEEEEeCCC
Confidence 766554321 234689999999999999998664 3321 0 13456777 678888887532
Q ss_pred CCCCCCCCCCceEEEEEeccCCC
Q 012812 406 NQGADTPGKRQLLCVANTHVNVH 428 (456)
Q Consensus 406 ~~~~~~~~~~~~l~VaNTHL~~~ 428 (456)
..+.|.++|+|+.+.
T Consensus 140 --------~~~~F~li~~H~~p~ 154 (276)
T smart00476 140 --------AVKEFVIVPLHTTPE 154 (276)
T ss_pred --------CCccEEEEEecCChH
Confidence 135689999999773
No 9
>PRK05421 hypothetical protein; Provisional
Probab=99.23 E-value=5.8e-11 Score=117.43 Aligned_cols=139 Identities=21% Similarity=0.105 Sum_probs=85.5
Q ss_pred CCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEe
Q 012812 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (456)
Q Consensus 250 ~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~ 329 (456)
.+++||||||||....- . +....++.| ..+|||||||||+.... +...+...||...|.
T Consensus 40 ~~~~lri~t~NI~~~~~-------------~----~~~~~l~~l-~~~~DiI~LQEv~~~~~---~~~~~~~~~~~~~~~ 98 (263)
T PRK05421 40 TEERLRLLVWNIYKQQR-------------A----GWLSVLKNL-GKDADLVLLQEAQTTPE---LVQFATANYLAADQA 98 (263)
T ss_pred cCCceeEEEEEcccccc-------------c----cHHHHHHHh-ccCCCEEEEEecccCcc---hHHHhhcccchHHhc
Confidence 35789999999975320 0 223555556 99999999999985432 222233455555443
Q ss_pred eccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCCC
Q 012812 330 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 409 (456)
Q Consensus 330 ~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~~ 409 (456)
+.... .....|+||+ |||++.....+...+ . ....++.++++.++..
T Consensus 99 ~~~~~-----~~~~~GvaiL---SR~pi~~~~~~~~~~-------~------------~~~~~r~~l~a~~~~~------ 145 (263)
T PRK05421 99 PAFVL-----PQHPSGVMTL---SKAHPVYCCPLRERE-------P------------WLRLPKSALITEYPLP------ 145 (263)
T ss_pred ccccc-----CCCccceeEe---eecccceeeccCCCC-------c------------cccCcceeEEEEEEeC------
Confidence 22111 1235799999 999987654431110 0 0012346778877752
Q ss_pred CCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 012812 410 DTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSS 446 (456)
Q Consensus 410 ~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~ 446 (456)
.++.|.|+||||.+.......|..|+..|.+.+
T Consensus 146 ----~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~~ 178 (263)
T PRK05421 146 ----NGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQI 178 (263)
T ss_pred ----CCCEEEEEEECccccCcChHHHHHHHHHHHHHH
Confidence 145689999999643223577999998887754
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.10 E-value=1.4e-09 Score=101.19 Aligned_cols=88 Identities=28% Similarity=0.417 Sum_probs=57.5
Q ss_pred EecccccCccCCCCCCCCCCCcccChHHHHHH------HHHHhhcCCCcEEEeccccchhHHhhhHHhHhhc-CCeeEEe
Q 012812 257 LSYNILSDVYATSESYSYCPSWALSWAYRRQN------LLREIIGYRADIVCLQEVQNDHFEEFFAPELDKH-GYQALYK 329 (456)
Q Consensus 257 mSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~------Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~-GY~g~~~ 329 (456)
|||||+. |.+|... |.+.|..++|||||||||....+.+.+...+... ++.+.+.
T Consensus 1 ~T~Nv~~------------------~~~~~~~~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~ 62 (249)
T PF03372_consen 1 MTWNVRG------------------WNYRSDNDRKRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFW 62 (249)
T ss_dssp EEEEEST------------------HHHHHHHHHHHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEE
T ss_pred CeEEeCc------------------CcccccchhHHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhccccccccccee
Confidence 8999984 5444444 9999999999999999998766666666666643 4355444
Q ss_pred eccCcccCCCCCCcceeEEeEecCceeEeEeEEEEc
Q 012812 330 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEF 365 (456)
Q Consensus 330 ~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f 365 (456)
....... . ....|+|||||...+.........+
T Consensus 63 ~~~~~~~-~--~~~~g~~i~~r~~~~~~~~~~~~~~ 95 (249)
T PF03372_consen 63 PGNSPPS-D--AGGYGVAILSRSPIFSSVSYVFSLF 95 (249)
T ss_dssp ETSSSTT-C--SSSEEEEEEESSCCCEEEEEEEEEE
T ss_pred ccccccc-c--ccCceEEEEEccccccccccccccc
Confidence 3322100 0 0358999999987665555444333
No 11
>PRK11756 exonuclease III; Provisional
Probab=99.10 E-value=8.5e-10 Score=108.74 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=78.6
Q ss_pred EEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeeccC
Q 012812 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (456)
Q Consensus 254 frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K~~ 333 (456)
+|||||||.. +..|...|.+.|...+||||||||+.... ..+-...+...||...|..+.
T Consensus 1 mri~T~Nv~g------------------~~~~~~~i~~~i~~~~pDIi~LQE~~~~~-~~~~~~~~~~~gy~~~~~~~~- 60 (268)
T PRK11756 1 MKFVSFNING------------------LRARPHQLEAIIEKHQPDVIGLQETKVHD-EMFPLEEVEALGYHVFYHGQK- 60 (268)
T ss_pred CEEEEEEcCC------------------HHHHHHHHHHHHHhcCCCEEEEEeccccc-ccCCHHHHHhcCCEEEEeCCC-
Confidence 5899999963 24566789999999999999999985332 111122345679987765321
Q ss_pred cccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCCCCCCC
Q 012812 334 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 413 (456)
Q Consensus 334 ~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~~~~~~ 413 (456)
...|+||+ +|++++.... .+... . .. ..+-++.+.++..
T Consensus 61 --------~~~Gvail---Sr~p~~~~~~-~~~~~----------~---~~------~~~r~l~~~i~~~---------- 99 (268)
T PRK11756 61 --------GHYGVALL---SKQTPIAVRK-GFPTD----------D---EE------AQRRIIMATIPTP---------- 99 (268)
T ss_pred --------CCCEEEEE---ECCChHHeEE-CCCCc----------c---cc------ccCCEEEEEEEcC----------
Confidence 34899999 6666654322 11100 0 00 0113455555541
Q ss_pred CCceEEEEEeccCCCCC-----ChhhHHHHHHHHHHHh
Q 012812 414 KRQLLCVANTHVNVHQE-----LKDVKLWQVLIILLSS 446 (456)
Q Consensus 414 ~~~~l~VaNTHL~~~P~-----~~dVRL~Q~~~Ll~~~ 446 (456)
.+. +.|.|+|+-.... ....|+.|+..|.+.+
T Consensus 100 ~g~-~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l 136 (268)
T PRK11756 100 NGN-LTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYL 136 (268)
T ss_pred CCC-EEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHH
Confidence 133 8889999954221 1235677777666554
No 12
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.00 E-value=1.6e-09 Score=106.93 Aligned_cols=141 Identities=23% Similarity=0.249 Sum_probs=91.1
Q ss_pred cEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccch------hHHhhhHHhH-hhcCCe
Q 012812 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQND------HFEEFFAPEL-DKHGYQ 325 (456)
Q Consensus 253 ~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~------~~~d~~~~~L-~~~GY~ 325 (456)
.++|+||||.... ...++.++.+.|.+.|.+..+|||||||++.. .+.+ +...+ ...|..
T Consensus 9 ~~~v~TyNih~~~------------~~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~-~~~~~~~~~~~~ 75 (259)
T COG3568 9 RFKVLTYNIHKGF------------GAFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLD-LPHLLGRLGLAP 75 (259)
T ss_pred eeEEEEEEEEEcc------------CccCceecHHHHHHHHHhhccCeeeeecccccccccccccch-hHHHHHHhcCCc
Confidence 3899999998532 12277788999999999999999999999852 2322 22222 233333
Q ss_pred eEEeeccC-cccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecc
Q 012812 326 ALYKRKTN-EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKF 404 (456)
Q Consensus 326 g~~~~K~~-~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~ 404 (456)
..+..-.. .++ ....+|.||+ ||.++.+.....+... ..+..+.|+++.++..
T Consensus 76 ~~~~~~~~~a~~---~~~~~GnaiL---S~~pi~~v~~~~lp~~-------------------~~~~~Rgal~a~~~~~- 129 (259)
T COG3568 76 YWWSGAAFGAVY---GEGQHGNAIL---SRLPIRDVENLALPDP-------------------TGLEPRGALLAEIELP- 129 (259)
T ss_pred cccchhhhhhhc---ccceeeeEEE---ecCcccchhhccCCCC-------------------CCCCCceeEEEEEEcC-
Confidence 22221110 011 1246899998 5666655444333210 0112347889998863
Q ss_pred cCCCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHH
Q 012812 405 SNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILL 444 (456)
Q Consensus 405 ~~~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~ 444 (456)
.++.|.|.|+||.+ ...-|+.|+..|++
T Consensus 130 ---------~g~~l~V~~~HL~l---~~~~R~~Q~~~L~~ 157 (259)
T COG3568 130 ---------GGKPLRVINAHLGL---SEESRLRQAAALLA 157 (259)
T ss_pred ---------CCCEEEEEEEeccc---cHHHHHHHHHHHHh
Confidence 25579999999998 67899999999998
No 13
>PTZ00297 pantothenate kinase; Provisional
Probab=98.90 E-value=1.5e-08 Score=120.32 Aligned_cols=157 Identities=19% Similarity=0.202 Sum_probs=96.0
Q ss_pred CCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhc-CCCcEEEeccccchh-----------HHhhhHH
Q 012812 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIG-YRADIVCLQEVQNDH-----------FEEFFAP 317 (456)
Q Consensus 250 ~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~-~~aDIICLQEVd~~~-----------~~d~~~~ 317 (456)
....||||||||.. |+ ++.-.| ..+.|...|.. .++||||||||.... |...+..
T Consensus 7 ~~~~l~VlTyNv~~--------~~---~~~~~~--~~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~ 73 (1452)
T PTZ00297 7 GCAQARVLSYNFNI--------LP---RGCGGF--QHERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVD 73 (1452)
T ss_pred CCCceEEEEEEccc--------cC---CCcccc--cHHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHHH
Confidence 45689999999853 11 111123 24667777777 477999999998642 2233455
Q ss_pred hHhhcCCeeEEeeccCccc---CCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcE
Q 012812 318 ELDKHGYQALYKRKTNEVY---NGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNV 394 (456)
Q Consensus 318 ~L~~~GY~g~~~~K~~~~~---~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnV 394 (456)
.|++.||..+-..+..... ........|+||+ |||++++...+.|..... . +...+| .
T Consensus 74 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AIL---SR~PI~~~~~~~l~~~~~--~---------~~~~~R-----G 134 (1452)
T PTZ00297 74 ELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIA---SRFPIWQRGSYTFRNHER--G---------EQSVRR-----G 134 (1452)
T ss_pred HHHhcCCceeEeecCccccccccCccccCCEEEEE---ECCChhhceeeecCcccc--c---------cccccc-----c
Confidence 6677798765544432110 0111245899999 999999999988875321 0 111223 5
Q ss_pred EEEEEeeecccCCCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHH
Q 012812 395 ALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLS 445 (456)
Q Consensus 395 aliv~Le~~~~~~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~ 445 (456)
++.+.++.... .+..+.+.|.||||.+.+. ..+|..|+..+.+-
T Consensus 135 ~L~a~I~vp~~------~g~~~~v~v~~tHL~~~~~-~~~R~~Q~~ql~~~ 178 (1452)
T PTZ00297 135 CLFAEVEVPLA------EGGSQRIVFFNVHLRQEDS-LPSTSSQVQETRRF 178 (1452)
T ss_pred eEEEEEEcccc------CCCCceEEEEEeCCCCCCC-cchHHHHHHHHHHH
Confidence 56666664210 0112469999999999753 34678887776654
No 14
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=98.85 E-value=3.2e-08 Score=97.15 Aligned_cols=137 Identities=18% Similarity=0.258 Sum_probs=89.9
Q ss_pred CCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEee
Q 012812 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKR 330 (456)
Q Consensus 251 ~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~ 330 (456)
..-|++|||||=.- +-.+...|...|...|+.|+|||||||||-...|. ++.. + +..|..++..
T Consensus 97 g~~~S~~~WnidgL-------------dln~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~-~~~K-~-~s~y~i~~~~ 160 (349)
T KOG2756|consen 97 GSMFSLITWNIDGL-------------DLNNLSERMRAVCHYLALYSPDVIFLQEVIPPYYS-YLKK-R-SSNYEIITGH 160 (349)
T ss_pred ccEEEEEEeecccc-------------ccchHHHHHHHHHHHHHhcCCCEEEEeecCchhhH-HHHH-h-hhheeEEEec
Confidence 35689999999420 11134589999999999999999999999877664 3333 2 3357766665
Q ss_pred ccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCCCC
Q 012812 331 KTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGAD 410 (456)
Q Consensus 331 K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~~~ 410 (456)
+... .| ++.-..++|.+-....+.|....|. | --+|+..+.
T Consensus 161 ~~~~---------~~-~~~l~~s~~~Vks~~~i~F~NS~M~----------------R-----~L~I~Ev~v-------- 201 (349)
T KOG2756|consen 161 EEGY---------FT-AIMLKKSRVKVKSQEIIPFPNSKMM----------------R-----NLLIVEVNV-------- 201 (349)
T ss_pred ccee---------ee-eeeeehhhcCccccceeccCcchhh----------------h-----eeEEEEEee--------
Confidence 5432 34 3444778999988888888765321 2 223443332
Q ss_pred CCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHH
Q 012812 411 TPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLS 445 (456)
Q Consensus 411 ~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~ 445 (456)
+ |..|+++||||...-..+--|..|-.+.|++
T Consensus 202 -~--G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k 233 (349)
T KOG2756|consen 202 -S--GNKLCLMTSHLESTRGHAPERMNQFKMVLKK 233 (349)
T ss_pred -c--CceEEEEeccccCCCCCChHHHHHHHHHHHH
Confidence 2 4459999999987433444566666666654
No 15
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=98.68 E-value=2.3e-07 Score=90.72 Aligned_cols=72 Identities=24% Similarity=0.445 Sum_probs=49.4
Q ss_pred EEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeeccC
Q 012812 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (456)
Q Consensus 254 frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K~~ 333 (456)
+||+||||..- ..+...+++.|..++||||||||+.... ..+....+...||..++.+..
T Consensus 1 mri~t~Ni~g~------------------~~~~~~~~~~l~~~~~DIi~LQE~~~~~-~~~~~~~~~~~g~~~~~~~~~- 60 (254)
T TIGR00195 1 MKIISWNVNGL------------------RARLHKGLAWLKENQPDVLCLQETKVQD-EQFPLEPFHKEGYHVFFSGQK- 60 (254)
T ss_pred CEEEEEEcCcH------------------HHhHHHHHHHHHhcCCCEEEEEecccch-hhCCHHHhhcCCcEEEEecCC-
Confidence 58999999631 2234458999999999999999996543 122222335679987765431
Q ss_pred cccCCCCCCcceeEEeEecC
Q 012812 334 EVYNGNPHTIDGCATFFRRD 353 (456)
Q Consensus 334 ~~~~~~~~~~dG~AIFyr~s 353 (456)
+..|+||+.|..
T Consensus 61 --------g~~Gvailsr~~ 72 (254)
T TIGR00195 61 --------GYSGVAIFSKEE 72 (254)
T ss_pred --------CcceEEEEEcCC
Confidence 347999997643
No 16
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=3.3e-07 Score=88.70 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=49.7
Q ss_pred EEEEecccccCccCCCCCCCCCCCcccChHHHHHHH-HHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeecc
Q 012812 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNL-LREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT 332 (456)
Q Consensus 254 frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~I-l~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K~ 332 (456)
+|||||||..- ..|.+.+ ++.|..++||||||||+.... ..+....+...||..+|....
T Consensus 1 lri~t~Nv~g~------------------~~~~~~~~~~~l~~~~~DIv~LQE~~~~~-~~~~~~~~~~~g~~~~~~~~~ 61 (255)
T TIGR00633 1 MKIISWNVNGL------------------RARLHKLFLDWLKEEQPDVLCLQETKVAD-EQFPAELFEELGYHVFFHGAK 61 (255)
T ss_pred CEEEEEecccH------------------HHHhhccHHHHHHhcCCCEEEEEeccCch-hhCCHhHhccCCceEEEeecc
Confidence 68999999642 1233445 899999999999999997653 222223345679988776543
Q ss_pred CcccCCCCCCcceeEEeEe
Q 012812 333 NEVYNGNPHTIDGCATFFR 351 (456)
Q Consensus 333 ~~~~~~~~~~~dG~AIFyr 351 (456)
. .+..|+|||+|
T Consensus 62 ~-------~~~~G~ailsr 73 (255)
T TIGR00633 62 S-------KGYSGVAILSK 73 (255)
T ss_pred c-------CCcceEEEEEc
Confidence 2 13479999955
No 17
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=98.04 E-value=7.8e-06 Score=81.09 Aligned_cols=71 Identities=25% Similarity=0.462 Sum_probs=50.5
Q ss_pred EEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeeccC
Q 012812 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (456)
Q Consensus 254 frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K~~ 333 (456)
+||+||||-. -.-|...+++.|.+++||||||||.-... .+|=...++..||++++..-.
T Consensus 1 mkI~SwNVNg------------------iRar~~~~~~~l~~~~pDVlclQEtK~~~-~~fp~~~~~~~GY~~~~~~gq- 60 (261)
T COG0708 1 MKIASWNVNG------------------LRARLKKLLDWLEEEQPDVLCLQETKAQD-EQFPREELEALGYHHVFNHGQ- 60 (261)
T ss_pred CeeEEEehhh------------------HHHHHHHHHHHHHHhCCCEEEEEecccCc-ccCCHhHHhhCCceEEEecCc-
Confidence 5899999953 24567779999999999999999985432 223344566789976664321
Q ss_pred cccCCCCCCcceeEEeEe
Q 012812 334 EVYNGNPHTIDGCATFFR 351 (456)
Q Consensus 334 ~~~~~~~~~~dG~AIFyr 351 (456)
++-.|+||+.|
T Consensus 61 -------KgysGVailsr 71 (261)
T COG0708 61 -------KGYSGVAILSK 71 (261)
T ss_pred -------CCcceEEEEEc
Confidence 24589999944
No 18
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=97.68 E-value=6.3e-05 Score=74.34 Aligned_cols=71 Identities=17% Similarity=0.329 Sum_probs=47.4
Q ss_pred EEEEecccccCccCCCCCCCCCCCcccChHHHH-HHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeecc
Q 012812 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRR-QNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT 332 (456)
Q Consensus 254 frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk-~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K~ 332 (456)
+||+||||-.= ..|. .-+.+.|...+||||||||.-..... + .+...||..++....
T Consensus 1 mki~swNVNgi------------------r~~~~~~~~~~l~~~~~DIiclQEtK~~~~~--~--~~~~~gY~~~~~~~~ 58 (250)
T PRK13911 1 MKLISWNVNGL------------------RACMTKGFMDFFNSVDADVFCIQESKMQQEQ--N--TFEFKGYFDFWNCAI 58 (250)
T ss_pred CEEEEEEeCCh------------------hHhhhhhHHHHHHhcCCCEEEEEeecccccc--c--ccccCCceEEEEecc
Confidence 58999999631 2233 24889999999999999998544322 1 134569987664221
Q ss_pred CcccCCCCCCcceeEEeEecC
Q 012812 333 NEVYNGNPHTIDGCATFFRRD 353 (456)
Q Consensus 333 ~~~~~~~~~~~dG~AIFyr~s 353 (456)
+++.-|+||+.|..
T Consensus 59 -------~kgy~GVAi~~k~~ 72 (250)
T PRK13911 59 -------KKGYSGVVTFTKKE 72 (250)
T ss_pred -------cCccceEEEEEcCC
Confidence 12346999997754
No 19
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=97.61 E-value=0.00015 Score=74.35 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=88.8
Q ss_pred CcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhh--hHHhHh-hcCCeeEE
Q 012812 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEF--FAPELD-KHGYQALY 328 (456)
Q Consensus 252 ~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~--~~~~L~-~~GY~g~~ 328 (456)
-.+||+|.|+.+-.|++++ -..|...|-+++.+-..||+.||||... +|| +..... .+-|...|
T Consensus 7 ~~lriltlN~Wgip~~Sk~-----------R~~Rm~~~g~~l~~E~yDiv~LQEvWs~--eD~~~L~~~~ss~yPysh~F 73 (422)
T KOG3873|consen 7 LELRILTLNIWGIPYVSKD-----------RRHRMDAIGDELASEKYDIVSLQEVWSQ--EDFEYLQSGCSSVYPYSHYF 73 (422)
T ss_pred heeeeeEeeccccccccch-----------hHHHHHHHhHHHhhcccchhhHHHHHHH--HHHHHHHHhccccCchHHhh
Confidence 4689999999987666542 2467778999999999999999999543 343 222222 23344444
Q ss_pred eeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCC
Q 012812 329 KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQG 408 (456)
Q Consensus 329 ~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~ 408 (456)
.. +- .+-|+++| |||++++.-.-.|+-. .++..+. ..+- +....|++. +|+.
T Consensus 74 HS--Gi-------mGaGL~vf---SK~PI~~t~~~~y~lN--G~p~~i~----rGDW---f~GK~Vgl~-~l~~------ 125 (422)
T KOG3873|consen 74 HS--GI-------MGAGLCVF---SKHPILETLFHRYSLN--GYPHAIH----RGDW---FGGKGVGLT-VLLV------ 125 (422)
T ss_pred hc--cc-------ccCceEEe---ecCchhhhhhhccccC--Cccceee----eccc---cccceeEEE-EEee------
Confidence 32 21 25799999 9999998754333211 1111111 1110 112346644 4443
Q ss_pred CCCCCCCceEEEEEeccCC--C---CCChhhHHHHHHHHHH
Q 012812 409 ADTPGKRQLLCVANTHVNV--H---QELKDVKLWQVLIILL 444 (456)
Q Consensus 409 ~~~~~~~~~l~VaNTHL~~--~---P~~~dVRL~Q~~~Ll~ 444 (456)
.++.+-+-||||+. + ..+--=|+.||-.+-+
T Consensus 126 -----~g~~v~~yntHLHAeY~rq~D~YL~HR~~QAwdlaq 161 (422)
T KOG3873|consen 126 -----GGRMVNLYNTHLHAEYDRQNDEYLCHRVAQAWDLAQ 161 (422)
T ss_pred -----CCEEeeeeehhccccccccCchhhhHHHHHHHHHHH
Confidence 14789999999986 2 1122348889877654
No 20
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=97.27 E-value=0.0026 Score=63.68 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=80.6
Q ss_pred CCCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcC-CCcEEEeccccchhHH---------------
Q 012812 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGY-RADIVCLQEVQNDHFE--------------- 312 (456)
Q Consensus 249 ~~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~-~aDIICLQEVd~~~~~--------------- 312 (456)
..-..++|.|||+-.-.+++. -+|.- -+.+.|.+. ++||+.+||++...-.
T Consensus 20 ~~~~~~~~~twn~qg~s~~~~----------~kw~~---~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~ 86 (271)
T PRK15251 20 ANLEDYKVATWNLQGSSASTE----------SKWNV---NVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGI 86 (271)
T ss_pred cccccceEEEeecCCCCCCCh----------hhhhh---hHHHHhcCCCCCCEEEEEecCCCcccccccccccccccccc
Confidence 345679999999987544432 24431 356667776 5999999999753211
Q ss_pred ---hhhHHhHh---hcCCeeEEeeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhh
Q 012812 313 ---EFFAPELD---KHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNAL 386 (456)
Q Consensus 313 ---d~~~~~L~---~~GY~g~~~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~ 386 (456)
+| .=.|. .-|+.++|.+... . .....|+||+ |||+..+...+..... .
T Consensus 87 ~v~ey-~w~l~~~srpgm~YiY~~aiD-~----~ggr~glAIl---Sr~~a~~~~~l~~p~~-----------------~ 140 (271)
T PRK15251 87 PIDEY-TWNLGTRSRPNQVYIYYSRVD-V----GANRVNLAIV---SRRRADEVIVLRPPTV-----------------A 140 (271)
T ss_pred CcccE-EEEccCccCCCceEEEEeccc-C----CCCceeEEEE---ecccccceEEecCCCC-----------------c
Confidence 10 00121 2346666664422 1 1246899999 9999877666543210 0
Q ss_pred hhcccCcEEEEEEeeecccCCCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 012812 387 NRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSS 446 (456)
Q Consensus 387 ~R~~~dnValiv~Le~~~~~~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~ 446 (456)
.| -++.+ +. . + ++++|||+.++.. .| +..|+..+.+..
T Consensus 141 ~R-----pilgi--~i--~---------~--~~ffstH~~a~~~-~d-a~aiV~~I~~~f 178 (271)
T PRK15251 141 SR-----PIIGI--RI--G---------N--DVFFSIHALANGG-TD-AGAIVRAVHNFF 178 (271)
T ss_pred cc-----ceEEE--Ee--c---------C--eEEEEeeecCCCC-cc-HHHHHHHHHHHH
Confidence 12 22222 21 0 1 6889999999752 33 888888877764
No 21
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=96.82 E-value=0.022 Score=58.17 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=29.0
Q ss_pred CceEEEEEeccCCCCCChhhHHHHHHHHHHHhhh
Q 012812 415 RQLLCVANTHVNVHQELKDVKLWQVLIILLSSIF 448 (456)
Q Consensus 415 ~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~~~ 448 (456)
+..|++.|+||..+...-+.|..|...+++++.+
T Consensus 137 ~~~~~fv~~HL~a~~~~~~~R~~~~~~I~~~~~f 170 (310)
T smart00128 137 DTSFCFVNSHLAAGASNVEQRNQDYKTILRALSF 170 (310)
T ss_pred CcEEEEEeeccccccchhhhhHHHHHHHHHhcCC
Confidence 3579999999999988888999999999987643
No 22
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=96.78 E-value=0.0012 Score=46.21 Aligned_cols=34 Identities=26% Similarity=0.617 Sum_probs=28.1
Q ss_pred CCCCCCcceecchhhccCCCCCceeecChHHhHHhHHHHHH
Q 012812 67 VHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRV 107 (456)
Q Consensus 67 ~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~ 107 (456)
..|++++...|+.|. ..+|||.+|.+.+|..||.
T Consensus 2 ~~C~~~~~~~C~~C~-------~~~YCs~~Cq~~~w~~Hk~ 35 (37)
T PF01753_consen 2 AVCGKPALKRCSRCK-------SVYYCSEECQRADWPYHKF 35 (37)
T ss_dssp TTTSSCSSEEETTTS-------SSEESSHHHHHHHHHHHCC
T ss_pred cCCCCCcCCcCCCCC-------CEEecCHHHHHHHHHHHhh
Confidence 467887777999882 2689999999999999974
No 23
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=90.14 E-value=2.7 Score=47.60 Aligned_cols=109 Identities=19% Similarity=0.336 Sum_probs=64.9
Q ss_pred CCCcEEEEecccccCccCC-CCC-------CCCCC--CcccChHHHHHHHHHHhhcCCCcEEEeccccchhH--------
Q 012812 250 STGTFSVLSYNILSDVYAT-SES-------YSYCP--SWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHF-------- 311 (456)
Q Consensus 250 ~~~~frVmSYNILad~Ya~-~~~-------y~ycp--~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~-------- 311 (456)
-.+.|||.|||||. |-+ -+. |.-|- ...-+.+.-+..|...|...++||+.|=|++.+-|
T Consensus 460 v~G~LkiasfNVlN--yf~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~~~s~~ai 537 (798)
T COG2374 460 VGGSLKIASFNVLN--YFNKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNGYGTDSGDAI 537 (798)
T ss_pred cCceeeeeeeehhh--hhccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeeccCCCCCcHHHH
Confidence 45689999999996 333 222 22221 11122334456699999999999999999987733
Q ss_pred HhhhHHhHhhcC----CeeEEeeccCcccCCCCCCcceeEEeEecCceeEeEeEEEE
Q 012812 312 EEFFAPELDKHG----YQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVE 364 (456)
Q Consensus 312 ~d~~~~~L~~~G----Y~g~~~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~ 364 (456)
.+.+...-++.| |..++..+... .....-++++.||.++-.++.+..+-
T Consensus 538 ~~lV~~lna~~G~~~~y~~v~p~~~~~----lgtD~I~vg~iY~~~~V~~~g~~~~~ 590 (798)
T COG2374 538 AQLVNALNAKAGAGTRYAFVAPGRNGG----LGTDAIRVGFIYKPSAVSLVGKAAIV 590 (798)
T ss_pred HHHHHHHHhhcCCCceEEEEecCccCC----cCCCceeEEEEeccceEEeccccccc
Confidence 232222223333 43343333211 11223578999999999988876554
No 24
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=88.08 E-value=0.32 Score=49.26 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=31.3
Q ss_pred ccccCCCCCC-cceecchhhccCCCCCceeecChHHhHHhHHHHHHHHH
Q 012812 63 AVCSVHPSEQ-ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 110 (456)
Q Consensus 63 ~~C~~~c~~~-a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H~ 110 (456)
..| .-||.+ |.-+|-.|.. ..||+|+|-|-.|-.||.+-+
T Consensus 320 ~fC-stCG~~ga~KrCs~CKa-------v~YCdqeCQk~hWf~HKK~C~ 360 (396)
T KOG1710|consen 320 QFC-STCGHPGAKKRCSQCKA-------VAYCDQECQKFHWFIHKKVCS 360 (396)
T ss_pred ccc-cccCCCCccchhhhhHH-------HHHHHHHHHHhhhHHHHHHHH
Confidence 456 567754 5788998864 348999999999999998765
No 25
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=79.88 E-value=1.6 Score=33.99 Aligned_cols=33 Identities=27% Similarity=0.654 Sum_probs=25.0
Q ss_pred ecchhhccCCCCCceeecChHHhHHhHHHHHHHHH
Q 012812 76 QCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 110 (456)
Q Consensus 76 ~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H~ 110 (456)
.||.|- .-|+ ...-|||++|=+..++.+|+..+
T Consensus 5 HC~~CG-~~Ip-~~~~fCS~~C~~~~~k~qk~~~~ 37 (59)
T PF09889_consen 5 HCPVCG-KPIP-PDESFCSPKCREEYRKRQKRMRK 37 (59)
T ss_pred cCCcCC-CcCC-cchhhhCHHHHHHHHHHHHHHHH
Confidence 477774 3343 25678999999999999998775
No 26
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.16 E-value=18 Score=37.22 Aligned_cols=135 Identities=21% Similarity=0.049 Sum_probs=70.2
Q ss_pred CCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEee
Q 012812 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKR 330 (456)
Q Consensus 251 ~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~ 330 (456)
...++++++|++.+.-. -..++..|...++|+|-+||.....-.. ...+ ...|.+....
T Consensus 86 ~~~~~~l~~N~r~~n~~------------------~~k~Lsl~~~~~~D~v~~~E~~~~~~~~--~~~l-~~~yP~~~~~ 144 (309)
T COG3021 86 QRLLWNLQKNVRFDNAS------------------VAKLLSLIQQLDADAVTTPEGVQLWTAK--VGAL-AAQYPAFILC 144 (309)
T ss_pred chhhhhhhhhccccCcC------------------HHHHHHHHhhhCcchhhhHHHHHHhHhH--HHHH-HHhCCceeec
Confidence 45689999998865310 2346666677779999999995433211 1122 3356643322
Q ss_pred ccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCCCC
Q 012812 331 KTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGAD 410 (456)
Q Consensus 331 K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~~~ 410 (456)
..+ ...-|.+++-++-. +.+... ...-|.-++.++....+-+
T Consensus 145 ~~~-------~~~~~~a~~sr~~~--------~~~~~~---------------e~~~~~pk~~~~t~~~~~~-------- 186 (309)
T COG3021 145 QHP-------TGVFTLAILSRRPC--------CPLTEA---------------EPWLRLPKSALATAYPLPD-------- 186 (309)
T ss_pred CCC-------CCeeeeeecccccc--------cccccc---------------CccccCCccceeEEEEcCC--------
Confidence 211 12455566533221 111110 0011222445555444333
Q ss_pred CCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHhhh
Q 012812 411 TPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSSIF 448 (456)
Q Consensus 411 ~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~~~ 448 (456)
|+.+.|+|-|..-.|-..+.--.|...|.+++..
T Consensus 187 ----g~~l~v~~lh~~~~~~~~~~~~~ql~~l~~~i~~ 220 (309)
T COG3021 187 ----GTELTVVALHAVNFPVGTDPQRAQLLELGDQIAG 220 (309)
T ss_pred ----CCEEEEEeeccccccCCccHHHHHHHHHHHHHHc
Confidence 5678999999983333333333777766666443
No 27
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=67.66 E-value=4.6 Score=27.13 Aligned_cols=28 Identities=25% Similarity=0.632 Sum_probs=19.6
Q ss_pred ccccCCCCCCcceecchhhccCCCCCceeecChHHhH
Q 012812 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFS 99 (456)
Q Consensus 63 ~~C~~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk 99 (456)
..| .-|+..+.-.||.|. .-+||-+|||
T Consensus 3 ~~C-~vC~~~~kY~Cp~C~--------~~~CSl~C~k 30 (30)
T PF04438_consen 3 KLC-SVCGNPAKYRCPRCG--------ARYCSLACYK 30 (30)
T ss_dssp EEE-TSSSSEESEE-TTT----------EESSHHHHH
T ss_pred CCC-ccCcCCCEEECCCcC--------CceeCcEeEC
Confidence 456 348888889999663 3399999997
No 28
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=64.96 E-value=4.5 Score=42.22 Aligned_cols=50 Identities=20% Similarity=0.036 Sum_probs=38.6
Q ss_pred cCcEEEEEEeeecccCCCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHhh
Q 012812 391 KDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSSI 447 (456)
Q Consensus 391 ~dnValiv~Le~~~~~~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~~ 447 (456)
+.++++.+.|+.. .+ +++ -.+++++||++|+|-..+-|+.|...+++++.
T Consensus 120 t~~dGc~if~k~~-~~-----~sk-~~li~~~~~~f~~p~~~~er~r~t~~~lnri~ 169 (378)
T COG5239 120 TKVDGCAIFLKRF-ID-----SSK-LGLILAVTHLFWHPYGYYERFRQTYILLNRIG 169 (378)
T ss_pred cccceEEEEEEec-cc-----cch-hhhhhhhhHhhcccceeehhhhHHHHHHHHHh
Confidence 4578888787762 21 122 25889999999999999999999999998843
No 29
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=54.87 E-value=7.4 Score=30.67 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=18.7
Q ss_pred cceecchhhccCC---CCCceeecChHHhHH
Q 012812 73 ATLQCLGCVKAKI---PVAKSYHCSPKCFSD 100 (456)
Q Consensus 73 a~l~Cp~C~k~~~---~~~~s~fCsq~CFk~ 100 (456)
.+..||+|.|.-. .....=|||+-|=.-
T Consensus 5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~I 35 (62)
T PRK00418 5 ITVNCPTCGKPVEWGEISPFRPFCSKRCQLI 35 (62)
T ss_pred ccccCCCCCCcccccCCCCcCCcccHHHHhh
Confidence 3578999999742 111334999999653
No 30
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=52.47 E-value=4.4 Score=44.27 Aligned_cols=39 Identities=28% Similarity=0.566 Sum_probs=28.8
Q ss_pred ccCCCCCCcceecchhhccCCCCCceeecChHHhHHhHHHHHHHHHhhh
Q 012812 65 CSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAA 113 (456)
Q Consensus 65 C~~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H~~~~ 113 (456)
| .+|.++|-+-|= ...| |||-+|-...|..|++.-...+
T Consensus 530 C-~nC~~EAiy~CC--------WNTS-YCsveCQQ~HW~~H~ksCrrk~ 568 (588)
T KOG3612|consen 530 C-YNCLDEAIYHCC--------WNTS-YCSVECQQGHWPEHRKSCRRKK 568 (588)
T ss_pred H-HhhhHHHHHHhh--------cccc-ccCcchhhccchhHhhhhcccC
Confidence 6 677777776654 3234 6999999999999998765443
No 31
>PRK01343 zinc-binding protein; Provisional
Probab=49.54 E-value=8.9 Score=29.74 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=18.6
Q ss_pred ceecchhhccCCCCCceeecChHHhHH
Q 012812 74 TLQCLGCVKAKIPVAKSYHCSPKCFSD 100 (456)
Q Consensus 74 ~l~Cp~C~k~~~~~~~s~fCsq~CFk~ 100 (456)
+..||+|.|.-.. ...-|||+-|=.-
T Consensus 9 ~~~CP~C~k~~~~-~~rPFCS~RC~~i 34 (57)
T PRK01343 9 TRPCPECGKPSTR-EAYPFCSERCRDI 34 (57)
T ss_pred CCcCCCCCCcCcC-CCCcccCHHHhhh
Confidence 4678999887553 3456999999653
No 32
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=46.57 E-value=7.6 Score=30.12 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=13.2
Q ss_pred ceecchhhccCCC---CCceeecChHHhH
Q 012812 74 TLQCLGCVKAKIP---VAKSYHCSPKCFS 99 (456)
Q Consensus 74 ~l~Cp~C~k~~~~---~~~s~fCsq~CFk 99 (456)
+..||+|.|.-.. -...=|||+-|=.
T Consensus 2 ~v~CP~C~k~~~~~~~n~~rPFCS~RCk~ 30 (57)
T PF03884_consen 2 TVKCPICGKPVEWSPENPFRPFCSERCKL 30 (57)
T ss_dssp EEE-TTT--EEE-SSSSS--SSSSHHHHH
T ss_pred cccCCCCCCeecccCCCCcCCcccHhhcc
Confidence 3578999875432 1234499999943
No 33
>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.
Probab=42.53 E-value=13 Score=28.34 Aligned_cols=19 Identities=26% Similarity=0.530 Sum_probs=14.4
Q ss_pred ccCCCCCceeecChHHhHH
Q 012812 82 KAKIPVAKSYHCSPKCFSD 100 (456)
Q Consensus 82 k~~~~~~~s~fCsq~CFk~ 100 (456)
+..|...+.+|||+.|-..
T Consensus 20 ~~Ai~~dGk~YCS~aCA~g 38 (52)
T PF02069_consen 20 EEAIQKDGKYYCSEACANG 38 (52)
T ss_dssp TTSEESSS-EESSHHHHHT
T ss_pred hHhHHhCCEeeecHHHhcc
Confidence 5667678899999999764
No 34
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=38.35 E-value=17 Score=27.72 Aligned_cols=11 Identities=36% Similarity=0.881 Sum_probs=8.9
Q ss_pred eeecChHHhHH
Q 012812 90 SYHCSPKCFSD 100 (456)
Q Consensus 90 s~fCsq~CFk~ 100 (456)
=|||||+|-..
T Consensus 28 YYFcse~~~~~ 38 (53)
T COG3350 28 YYFCSEECKEK 38 (53)
T ss_pred EEEeCHHHHHH
Confidence 68999999543
No 35
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.28 E-value=32 Score=27.34 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=17.3
Q ss_pred ceecchhhccCCC---CCceeecChHHhH
Q 012812 74 TLQCLGCVKAKIP---VAKSYHCSPKCFS 99 (456)
Q Consensus 74 ~l~Cp~C~k~~~~---~~~s~fCsq~CFk 99 (456)
+..||+|-|.-.- -...-|||+-|--
T Consensus 7 ~v~CP~Cgkpv~w~~~s~frPFCSkRCkl 35 (65)
T COG3024 7 TVPCPTCGKPVVWGEESPFRPFCSKRCKL 35 (65)
T ss_pred cccCCCCCCcccccccCCcCcchhHhhhh
Confidence 4678888875431 1345699999953
No 36
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=24.89 E-value=36 Score=27.56 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=10.5
Q ss_pred eeecChHHhHHh
Q 012812 90 SYHCSPKCFSDA 101 (456)
Q Consensus 90 s~fCsq~CFk~~ 101 (456)
+.|||..||+.+
T Consensus 59 ~~fCS~~C~~~s 70 (79)
T PF04181_consen 59 SKFCSKDCYKAS 70 (79)
T ss_pred cCcCCHHHHHHH
Confidence 479999999985
No 37
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.62 E-value=19 Score=32.33 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=15.0
Q ss_pred ccccCCCCCCcceecchhhc
Q 012812 63 AVCSVHPSEQATLQCLGCVK 82 (456)
Q Consensus 63 ~~C~~~c~~~a~l~Cp~C~k 82 (456)
+-| .+||+.+-+|||+|-.
T Consensus 29 afc-skcgeati~qcp~csa 47 (160)
T COG4306 29 AFC-SKCGEATITQCPICSA 47 (160)
T ss_pred HHH-hhhchHHHhcCCccCC
Confidence 347 6899887899999954
No 38
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=24.33 E-value=64 Score=32.61 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhhcCCCcEEEeccccc
Q 012812 282 WAYRRQNLLREIIGYRADIVCLQEVQN 308 (456)
Q Consensus 282 W~yRk~~Il~eI~~~~aDIICLQEVd~ 308 (456)
...|...|++.-....+.||||||...
T Consensus 98 ih~r~kaiieaaa~agvniiclqeawt 124 (387)
T KOG0808|consen 98 IHDRLKAIIEAAAVAGVNIICLQEAWT 124 (387)
T ss_pred HHHHHHHHHHHHHhcCccEEEeehhhc
Confidence 346778888888889999999999754
No 39
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=22.19 E-value=41 Score=24.36 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=8.8
Q ss_pred eeecChHHhHH
Q 012812 90 SYHCSPKCFSD 100 (456)
Q Consensus 90 s~fCsq~CFk~ 100 (456)
=+|||++|-+.
T Consensus 25 Y~FCS~~C~~~ 35 (47)
T PF04945_consen 25 YYFCSEGCKEK 35 (47)
T ss_dssp EEESSHHHHHH
T ss_pred EEEcCHHHHHH
Confidence 58999999543
No 40
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=21.91 E-value=84 Score=31.53 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=18.6
Q ss_pred CCCCce-eEEEEeeecCCCccccccCCCCCC---------cceecchhhc
Q 012812 43 PIDGHF-LRYKWYRIQSDRKVAVCSVHPSEQ---------ATLQCLGCVK 82 (456)
Q Consensus 43 ~~~~~~-~~~~w~r~~~~~~~~~C~~~c~~~---------a~l~Cp~C~k 82 (456)
...|.| .++..|+-. ...| ..||.+ ++--||.|++
T Consensus 228 g~~g~~~~~~~Vy~R~----g~pC-prCG~~I~~~~~~gR~t~~CP~CQ~ 272 (272)
T PRK14810 228 GRSGFFQLSHRVYQRT----GEPC-LNCKTPIRRVVVAGRSSHYCPHCQK 272 (272)
T ss_pred CCCCcchhhEeecCCC----CCcC-CCCCCeeEEEEECCCccEECcCCcC
Confidence 344555 455556532 3567 667653 2355777753
No 41
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=20.63 E-value=41 Score=26.32 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=19.1
Q ss_pred eecchhhccCCCCCceeecChHHhHHhHHHHH
Q 012812 75 LQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHR 106 (456)
Q Consensus 75 l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk 106 (456)
-.|+.|-|.-=+ .--|||.+|-+--=++.|
T Consensus 9 ~HC~VCg~aIp~--de~~CSe~C~eil~ker~ 38 (64)
T COG4068 9 RHCVVCGKAIPP--DEQVCSEECGEILNKERK 38 (64)
T ss_pred ccccccCCcCCC--ccchHHHHHHHHHHHHHH
Confidence 357777765333 567999999854333333
Done!