Query 012812
Match_columns 456
No_of_seqs 379 out of 1361
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ngq_A CCR4-NOT transcription 100.0 7.6E-41 2.6E-45 346.7 17.4 211 219-446 8-225 (398)
2 4b8c_D Glucose-repressible alc 100.0 1.4E-29 4.8E-34 279.6 4.3 184 250-446 391-577 (727)
3 3l1w_A Uncharacterized protein 99.8 3.5E-19 1.2E-23 169.4 17.0 153 254-447 1-153 (257)
4 3g6s_A Putative endonuclease/e 99.8 9.3E-19 3.2E-23 167.6 15.8 156 252-446 2-158 (267)
5 3mpr_A Putative endonuclease/e 99.8 6.1E-19 2.1E-23 173.1 13.6 161 250-447 3-163 (298)
6 4f1h_A Tyrosyl-DNA phosphodies 99.7 4.3E-16 1.5E-20 142.9 17.8 138 252-447 2-139 (250)
7 4gz1_A Tyrosyl-DNA phosphodies 99.7 3.2E-16 1.1E-20 146.2 16.9 140 250-447 6-145 (256)
8 3teb_A Endonuclease/exonucleas 99.6 1.9E-15 6.4E-20 143.3 14.1 148 252-446 2-165 (266)
9 4fva_A 5'-tyrosyl-DNA phosphod 99.6 1.2E-14 4.2E-19 135.8 17.2 139 249-445 9-147 (256)
10 1zwx_A SMCL, sphingomyelinase- 99.6 9.6E-15 3.3E-19 141.8 13.8 158 250-447 7-180 (301)
11 4gew_A 5'-tyrosyl-DNA phosphod 99.6 2.1E-14 7.3E-19 146.2 17.0 139 249-445 115-253 (362)
12 3i41_A Beta-hemolysin; beta to 99.6 3E-14 1E-18 141.6 14.3 162 249-448 25-200 (317)
13 2ddr_A Sphingomyelin phosphodi 99.5 9.7E-13 3.3E-17 127.7 15.6 158 250-447 6-180 (306)
14 1ako_A Exonuclease III; AP-end 99.3 1.1E-11 3.8E-16 117.3 12.8 131 254-446 1-136 (268)
15 2jc4_A Exodeoxyribonuclease II 99.2 8.8E-11 3E-15 110.3 13.1 71 254-352 1-71 (256)
16 2a40_B Deoxyribonuclease-1; WA 99.2 2.1E-10 7.3E-15 109.9 13.9 129 254-427 1-137 (260)
17 1vyb_A ORF2 contains A reverse 99.1 1.2E-09 4.1E-14 101.2 14.3 83 250-358 4-87 (238)
18 2jc5_A Exodeoxyribonuclease; h 99.0 1E-09 3.5E-14 103.2 11.8 74 254-354 2-77 (259)
19 2o3h_A DNA-(apurinic or apyrim 99.0 2E-09 6.8E-14 103.5 12.3 84 249-357 24-109 (285)
20 1wdu_A TRAS1 ORF2P; four-layer 98.9 1.8E-08 6.3E-13 95.1 14.0 79 251-358 17-95 (245)
21 1hd7_A DNA-(apurinic or apyrim 98.9 6.7E-09 2.3E-13 102.6 10.9 83 250-357 58-142 (318)
22 2voa_A AF_EXO, XTHA, exodeoxyr 98.9 1.8E-08 6E-13 94.9 12.5 71 254-352 2-72 (257)
23 3g91_A MTH0212, exodeoxyribonu 98.8 1.9E-08 6.4E-13 96.0 10.6 78 253-356 3-81 (265)
24 2j63_A AP-endonuclease; base e 98.7 3.2E-08 1.1E-12 104.3 11.3 83 250-355 146-232 (467)
25 2imq_X Salivary nitrophorin; f 98.7 3.6E-09 1.2E-13 104.1 3.7 142 251-446 6-157 (282)
26 2f1n_A CDT B, cytolethal diste 98.2 1.2E-06 4E-11 85.5 6.7 137 249-445 11-166 (262)
27 1sr4_B CDT B, cytolethal diste 98.1 6.6E-06 2.2E-10 80.5 9.6 45 252-309 3-48 (261)
28 2xsw_A 72 kDa inositol polypho 98.0 2.4E-05 8.2E-10 79.8 10.4 145 252-448 26-175 (357)
29 1i9z_A Synaptojanin, phosphati 97.9 0.00011 3.8E-09 74.5 14.6 144 251-447 24-189 (347)
30 2ei9_A Non-LTR retrotransposon 97.5 9.4E-05 3.2E-09 70.5 6.0 63 253-357 7-69 (240)
31 3mtc_A Type II inositol-1,4,5- 96.8 0.017 5.9E-07 57.7 14.2 35 415-449 134-168 (313)
32 4a9c_A Phosphatidylinositol-3, 96.8 0.032 1.1E-06 55.8 15.7 117 296-448 46-169 (316)
33 2dj8_A Protein CBFA2T1; zinc f 94.9 0.02 7E-07 43.1 3.5 37 63-107 16-52 (60)
34 2od1_A Protein CBFA2T1; zinc f 94.8 0.02 6.8E-07 43.2 3.3 37 63-107 14-50 (60)
35 2odd_A Protein CBFA2T1; MYND z 94.6 0.02 6.9E-07 43.6 2.9 38 63-108 18-55 (64)
36 2d8q_A BLU protein, zinc finge 94.5 0.026 8.8E-07 44.1 3.4 40 63-110 16-55 (70)
37 2jw6_A Deformed epidermal auto 94.4 0.013 4.6E-07 42.6 1.6 38 62-107 9-46 (52)
38 3qwp_A SET and MYND domain-con 89.7 0.2 6.8E-06 51.6 3.8 39 63-109 48-88 (429)
39 3qww_A SET and MYND domain-con 89.3 0.19 6.5E-06 52.0 3.3 39 62-108 49-89 (433)
40 3n71_A Histone lysine methyltr 87.4 0.36 1.2E-05 50.7 4.0 41 62-110 49-91 (490)
41 2yqq_A Zinc finger HIT domain- 57.4 6.6 0.00022 29.2 2.6 27 65-100 15-41 (56)
42 4dix_A Plectin-related protein 52.6 7.7 0.00026 36.3 2.8 21 177-197 64-84 (230)
43 1x4s_A Protein FON, zinc finge 47.9 8.4 0.00029 29.0 1.9 31 61-100 10-44 (59)
44 1lv3_A Hypothetical protein YA 42.6 9.8 0.00033 29.4 1.5 26 74-99 9-37 (68)
45 1jjd_A Metallothionein, SMTA; 24.2 27 0.00091 25.9 1.2 19 82-100 20-38 (55)
46 2w0t_A Lethal(3)malignant brai 23.3 30 0.001 24.3 1.3 28 74-101 6-37 (43)
No 1
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=100.00 E-value=7.6e-41 Score=346.66 Aligned_cols=211 Identities=37% Similarity=0.687 Sum_probs=169.8
Q ss_pred CCCCCCCCCeeeeCCCCccccccccCCCCCCCCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCC
Q 012812 219 PAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRA 298 (456)
Q Consensus 219 p~p~p~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~a 298 (456)
+.|+|++|.|+.+... .+..+...|||||||||+|.|+++++|+|||+++++|.+|++.|+++|..++|
T Consensus 8 ~~~~p~~R~wi~~~~~-----------~~~~~~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~p 76 (398)
T 3ngq_A 8 HPEQLPPRPWITLKER-----------DQILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDA 76 (398)
T ss_dssp ----CCCCCEEECSCC-----------C--CCCEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCcceECCCC-----------CCCCCCCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCC
Confidence 4566789999998641 12234568999999999999999999999999999999999999999999999
Q ss_pred cEEEeccccchhHHhhhHHhHhhcCCeeEEeeccCcccC--CCCCCcceeEEeEecCceeEeEeEEEEcccccccccccc
Q 012812 299 DIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYN--GNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAI 376 (456)
Q Consensus 299 DIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K~~~~~~--~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~ 376 (456)
||||||||+..+|.+++.+.|...||.++|..|++...+ ++.++.+|||||||++||+++++..|+|++.+..
T Consensus 77 DIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~----- 151 (398)
T 3ngq_A 77 DIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMA----- 151 (398)
T ss_dssp SEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHH-----
T ss_pred CEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCccc-----
Confidence 999999999888888889999999999999877543110 1123579999999999999999999999987642
Q ss_pred CCchhhhhhhhhcc-cCcEEEEEEeeecccCCCC----CCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 012812 377 LPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGA----DTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSS 446 (456)
Q Consensus 377 ~~~~~~~~~~~R~~-~dnValiv~Le~~~~~~~~----~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~ 446 (456)
++..++++++|++ ++|||++++|+.+.+.... ....+++.|+|+||||+|+|.+.++|+.|+++||+++
T Consensus 152 -~s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l 225 (398)
T 3ngq_A 152 -NSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEV 225 (398)
T ss_dssp -TCTTCHHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred -ccccchhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 2234678999998 6999999999987421000 0012467899999999999999999999999999874
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.95 E-value=1.4e-29 Score=279.62 Aligned_cols=184 Identities=39% Similarity=0.715 Sum_probs=66.3
Q ss_pred CCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEe
Q 012812 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (456)
Q Consensus 250 ~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~ 329 (456)
....+++||||||++.|++...|+|||++.++|.+|+..|+++|..++|||||||||+.++|.+++.+.|+++||.++|.
T Consensus 391 ~~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~ 470 (727)
T 4b8c_D 391 AKRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFH 470 (727)
T ss_dssp -----------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC-
T ss_pred cccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eccCccc--CCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcc-cCcEEEEEEeeecccC
Q 012812 330 RKTNEVY--NGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSN 406 (456)
Q Consensus 330 ~K~~~~~--~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~-~dnValiv~Le~~~~~ 406 (456)
++.+... ..+....+|||||||++||++++...++|++........ ....+.++|.+ ++++++++.|+++.
T Consensus 471 ~~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~~~~~~i~~~~~l~~~~-- 544 (727)
T 4b8c_D 471 AKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKKF----QRTEDYLNRAMNKDNVALFLKLQHIP-- 544 (727)
T ss_dssp ---------------CCCCEEEC---------------------------------------------------------
T ss_pred ccCCcccccccCCCCcccEEEEEEcccceEeeeeEEeechhhhhchhh----cccHHHHhhcccCCcEEEEEEEeecC--
Confidence 7754311 122346799999999999999999999998654321110 01234466765 68999999999753
Q ss_pred CCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 012812 407 QGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSS 446 (456)
Q Consensus 407 ~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~ 446 (456)
+++.|+|+||||+|+|.+.++|+.|+..|++++
T Consensus 545 -------~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l 577 (727)
T 4b8c_D 545 -------SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHL 577 (727)
T ss_dssp ----------------------------------------
T ss_pred -------CCceEEEEEeccccCCCCCchHHHHHHHHHHHH
Confidence 256799999999999999999999999998763
No 3
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.81 E-value=3.5e-19 Score=169.36 Aligned_cols=153 Identities=16% Similarity=0.272 Sum_probs=113.5
Q ss_pred EEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeeccC
Q 012812 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (456)
Q Consensus 254 frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K~~ 333 (456)
||||||||+... .++....|++|++.|+++|..++|||||||||+..++.++ . ..+||..++..+..
T Consensus 1 lrv~t~Ni~~~~---------~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l-~---~~l~y~~~~~~~~~ 67 (257)
T 3l1w_A 1 MKIATYNVRVDT---------EYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDL-K---AYTTFTCLSAEREG 67 (257)
T ss_dssp CEEEEEECCCCC---------GGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHH-H---HHSSSEEEEEESSS
T ss_pred CEEEEEEeccCC---------CCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH-H---hcCCCcEEEecccC
Confidence 689999998643 1234678999999999999999999999999997776542 2 23599776655432
Q ss_pred cccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCCCCCCC
Q 012812 334 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 413 (456)
Q Consensus 334 ~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~~~~~~ 413 (456)
. ...+|+|||||+++|++++...++|++... . ++....... .++++++.++...
T Consensus 68 ~------~~~~g~ail~r~~~~~~~~~~~~~l~~~~~----~--~~~~~~~~~-----~r~~~~~~~~~~~--------- 121 (257)
T 3l1w_A 68 D------GQGEGLAILYNEQKVQAIDTGYFWLSETPQ----Q--PSIHPEAGC-----PRIALWGLFKETT--------- 121 (257)
T ss_dssp S------SCSCEEEEEECTTTEEEEEEEEEESSSSTT----S--SCCCTTCSS-----CCEEEEEEEEETT---------
T ss_pred C------CCCceEEEEEEcceEEEEecCeEECcCCCC----c--ccccccccc-----cceeEEEEEEEcC---------
Confidence 1 246899999999999999999999986431 1 111111122 3478888888742
Q ss_pred CCceEEEEEeccCCCCCChhhHHHHHHHHHHHhh
Q 012812 414 KRQLLCVANTHVNVHQELKDVKLWQVLIILLSSI 447 (456)
Q Consensus 414 ~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~~ 447 (456)
.++.+.|+||||.+. ..+.|..|+..|++.+-
T Consensus 122 ~g~~~~v~~~Hl~~~--~~~~r~~q~~~l~~~i~ 153 (257)
T 3l1w_A 122 QNTPFLVINVHLDHI--SAHARLAGMTVILEELH 153 (257)
T ss_dssp CSSCEEEEEEECCSS--CHHHHHHHHHHHHHHTH
T ss_pred CCCEEEEEEeCCCCC--CHHHHHHHHHHHHHHHH
Confidence 245799999999885 46899999999988644
No 4
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.79 E-value=9.3e-19 Score=167.64 Aligned_cols=156 Identities=17% Similarity=0.259 Sum_probs=113.9
Q ss_pred CcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeec
Q 012812 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331 (456)
Q Consensus 252 ~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K 331 (456)
+.||||||||+.... .+....|..|+..|++.|..++|||||||||+.+++.+ +...| .||..++..+
T Consensus 2 ~~l~v~t~Ni~~~~~---------~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~-l~~~l--~~y~~~~~~~ 69 (267)
T 3g6s_A 2 TDVRWATFNIRYDNP---------QDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQD-LRAGL--PEYDGIGVGR 69 (267)
T ss_dssp EEEEEEEEECCCCCG---------GGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHH-HHHHC--TTEEEECCCT
T ss_pred CcEEEEEEEeccCCC---------CccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHhc--cCCcEEEecC
Confidence 469999999986431 12467899999999999999999999999999776544 33333 4777755433
Q ss_pred cCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCc-hhhhhhhhhcccCcEEEEEEeeecccCCCCC
Q 012812 332 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPS-AQKKNALNRLVKDNVALIVVLEAKFSNQGAD 410 (456)
Q Consensus 332 ~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~-~~~~~~~~R~~~dnValiv~Le~~~~~~~~~ 410 (456)
.. +....+|+|||||++||++++...++|++.... +. ..+....+ ++++++.|+.+.
T Consensus 70 ~~-----~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~-----R~~~~~~~~~~~------ 127 (267)
T 3g6s_A 70 DD-----GKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDS------VGMMGWDAVCV-----RIATWAKFKDKA------ 127 (267)
T ss_dssp TT-----SSSSSCBCCEEEETTTEEEEEEEEEESSSCTTS------TTCCCTTCSSC-----CEEEEEEEEETT------
T ss_pred CC-----CCcCCceeEEEEEccceEEEecccEecCCCCCc------cccccccccCc-----ceEEEEEEEEcC------
Confidence 21 112457899999999999999999999865311 11 11222233 478889988742
Q ss_pred CCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 012812 411 TPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSS 446 (456)
Q Consensus 411 ~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~ 446 (456)
.++.|.|+||||.+. ....|..|+..|++.+
T Consensus 128 ---~~~~~~v~~~Hl~~~--~~~~R~~q~~~l~~~l 158 (267)
T 3g6s_A 128 ---TGKIFMAVNTHFDHV--GEEARRQSALLIIRKI 158 (267)
T ss_dssp ---TCCEEEEEEEECCSS--CHHHHHHHHHHHHHHH
T ss_pred ---CCCEEEEEEeCCCCC--CHHHHHHHHHHHHHHH
Confidence 256799999999874 4789999999988764
No 5
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=6.1e-19 Score=173.07 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=113.8
Q ss_pred CCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEe
Q 012812 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (456)
Q Consensus 250 ~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~ 329 (456)
.+.+||||||||+...-.. ......|..|++.|+++|..++|||||||||+.++..+ +...|. +|..+..
T Consensus 3 ~~~~lrV~t~Ni~~~~~~~-------~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~-l~~~l~--~y~~~~~ 72 (298)
T 3mpr_A 3 QPTSLTVASYNLRNANGSD-------SARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKD-MKEALP--GYDYIGV 72 (298)
T ss_dssp CCEEEEEEEEECCCCCHHH-------HHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHH-HHHHST--TEEEECC
T ss_pred CCCcEEEEEEEeccCCCCC-------cccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH-HHHhCC--CCcEEEE
Confidence 4568999999997532100 01256899999999999999999999999998776544 333442 5665543
Q ss_pred eccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCCC
Q 012812 330 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 409 (456)
Q Consensus 330 ~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~~ 409 (456)
.+. ++....+++|||||++||++++...++|++.... ++..+...++| +++++.|+.+.
T Consensus 73 ~~~-----~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~------~~~~~~~~~~R-----~~~~~~~~~~~----- 131 (298)
T 3mpr_A 73 GRD-----DGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDV------PSKGWDAVLPR-----ICSWGHFKCKD----- 131 (298)
T ss_dssp CTT-----TSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTS------SCCCTTCSSCC-----EEEEEEEEETT-----
T ss_pred ecC-----CCCCCCceeEEEEecCceEEEeccEEEccCCCCc------cCcccccccCc-----eeEEEEEEEcC-----
Confidence 332 1123457799999999999999999999865311 11112222334 78888888642
Q ss_pred CCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHhh
Q 012812 410 DTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSSI 447 (456)
Q Consensus 410 ~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~~ 447 (456)
.++.|.|+||||.+ .....|..|+..|++.+-
T Consensus 132 ----~g~~~~v~~~Hl~~--~~~~~R~~q~~~l~~~i~ 163 (298)
T 3mpr_A 132 ----TGFEFLFFNLHMDH--IGKKARVESAFLVQEKMK 163 (298)
T ss_dssp ----TCCEEEEEEEECCS--SCHHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEEEEecCCC--CCHHHHHHHHHHHHHHHH
Confidence 25679999999986 457899999999887643
No 6
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.70 E-value=4.3e-16 Score=142.92 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=100.5
Q ss_pred CcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeec
Q 012812 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331 (456)
Q Consensus 252 ~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K 331 (456)
.+||||||||..- ...+|..|.+.|++.|..++|||||||||+.+++.. + ....++...+...
T Consensus 2 ~~l~v~t~Ni~g~-------------~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~-l---~~~~~~~~~~~~~ 64 (250)
T 4f1h_A 2 SKLSIISWNVDGL-------------DTLNLADRARGLCSYLALYTPDVVFLQELIPAYVQY-L---KKRAVSYLFFEGS 64 (250)
T ss_dssp CCEEEEEEECCTT-------------CCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHH-H---HHHCTTEEEEESC
T ss_pred CeEEEEEEEeCCC-------------CCcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-H---HHhccCceeeccc
Confidence 5799999999631 134689999999999999999999999998665432 1 2244554444332
Q ss_pred cCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCCCCC
Q 012812 332 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADT 411 (456)
Q Consensus 332 ~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~~~~ 411 (456)
. ...|.++++++++|++++...+.+.... ....++++.+..
T Consensus 65 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~--------- 105 (250)
T 4f1h_A 65 D---------DGYFTGIMLRKSRVKFLESEIICFPTTQ---------------------MMRNLLIAQVTF--------- 105 (250)
T ss_dssp S---------SSSEEEEEEETTTCEEEEEEEEECTTCS---------------------SCCEEEEEEEEE---------
T ss_pred c---------cccCceeEEeeccccceecccccccCcc---------------------ccceEEEEEEec---------
Confidence 1 2467789999999999999887765421 011333443332
Q ss_pred CCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHhh
Q 012812 412 PGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSSI 447 (456)
Q Consensus 412 ~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~~ 447 (456)
.++.+.|+||||.+.+.....|..|+..+++.+.
T Consensus 106 --~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l~ 139 (250)
T 4f1h_A 106 --SGQKLYLMTSHLESCKNQSQERTKQLRVVLQKIK 139 (250)
T ss_dssp --TTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEeccccccccccHHHHHHHHHHHHHHHH
Confidence 2567999999999999899999999999988753
No 7
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.70 E-value=3.2e-16 Score=146.24 Aligned_cols=140 Identities=17% Similarity=0.152 Sum_probs=100.4
Q ss_pred CCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEe
Q 012812 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (456)
Q Consensus 250 ~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~ 329 (456)
...+||||||||..- ...+|..|++.|++.|..++|||||||||+.+++.. |.+..+...+.
T Consensus 6 ~~~~l~v~swNi~g~-------------~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~-----l~~~~~~~~~~ 67 (256)
T 4gz1_A 6 DSSTISFITWNIDGL-------------DGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAY-----LKKRAASYTII 67 (256)
T ss_dssp GGGEEEEEEEECCTT-------------CCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHH-----HHHHCTTEEEE
T ss_pred CCCcEEEEEEEcCCC-------------cCcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH-----HHhhcccccee
Confidence 456899999999631 134789999999999999999999999998765532 33333333332
Q ss_pred eccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCCC
Q 012812 330 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 409 (456)
Q Consensus 330 ~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~~ 409 (456)
.... ...|.++|++++++.+.......+.... ....++.+.++.
T Consensus 68 ~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~------- 111 (256)
T 4gz1_A 68 TGNE--------EGYFTAILLKKGRVKFKSQEIIPFPNTK---------------------MMRNLLCVNVSL------- 111 (256)
T ss_dssp ESCS--------SSSEEEEEEETTTEEEEEEEEEECTTCS---------------------SCCEEEEEEEEE-------
T ss_pred eccc--------cCCceEEEEEeccccceecccccCCccc---------------------ccceEEEEEEEe-------
Confidence 2211 3578999999999999887766554321 011334444443
Q ss_pred CCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHhh
Q 012812 410 DTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSSI 447 (456)
Q Consensus 410 ~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~~ 447 (456)
.++.|.|+||||.+.+.....|..|+..+++.+.
T Consensus 112 ----~~~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~l~ 145 (256)
T 4gz1_A 112 ----GGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQ 145 (256)
T ss_dssp ----TTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHH
T ss_pred ----CCEEEEEEeecccccccchhhhhHHHHHHhhhhh
Confidence 2567999999999998889999999999988753
No 8
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.64 E-value=1.9e-15 Score=143.26 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=103.7
Q ss_pred CcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchh-------------HHhhhHHh
Q 012812 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDH-------------FEEFFAPE 318 (456)
Q Consensus 252 ~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~-------------~~d~~~~~ 318 (456)
+.||||||||+... ..++..|...|++.|..++|||||||||+... |...+...
T Consensus 2 ~~l~v~t~Ni~~~~-------------~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~ 68 (266)
T 3teb_A 2 NAMKILTVNVHAWL-------------EENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLET 68 (266)
T ss_dssp -CEEEEEEECCTTC-------------STTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHH
T ss_pred CceEEEEEeccccc-------------CcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHH
Confidence 57999999998531 23678889999999999999999999996432 22334566
Q ss_pred HhhcC---CeeEEeeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEE
Q 012812 319 LDKHG---YQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVA 395 (456)
Q Consensus 319 L~~~G---Y~g~~~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnVa 395 (456)
|.+.| |...+..... +.....+|+||| +||++++...++++.... . +. . ..+.+
T Consensus 69 l~~~~~~~y~~~~~~~~~----~~~~~~~g~ail---sr~~~~~~~~~~~~~~~~----~--~~--~--------~~r~~ 125 (266)
T 3teb_A 69 LQKYTDTDYYLHWSNSHI----GFGKYNEGVAVI---TRHKIKAEDEFYCTFAQS----V--RT--I--------SARRI 125 (266)
T ss_dssp HTTTCCSCCEEEEEEEEE----CSTTEEEEEEEE---ESSCCSEEEEEECSSCCC----T--TC--T--------TCCEE
T ss_pred HHHhCCCCeEEEEecccc----CccccCCeEEEE---ECceecCceeEEeCCCCC----C--CC--c--------ccceE
Confidence 76655 7765432211 111245799999 889999999988876421 0 00 0 11345
Q ss_pred EEEEeeecccCCCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 012812 396 LIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSS 446 (456)
Q Consensus 396 liv~Le~~~~~~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~ 446 (456)
+.+.++. .++.|.|+||||.+.+...+.|..|+..|++.+
T Consensus 126 ~~~~~~~-----------~~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~ 165 (266)
T 3teb_A 126 VSITINY-----------EGQDIEFYSCHMNLPNCETEDMGKNIQTILNRT 165 (266)
T ss_dssp EEEEEEE-----------TTEEEEEEEEECCCTTCTTCCHHHHHHHHHTSS
T ss_pred EEEEEEe-----------CCeEEEEEEecCCCccCChHHHHHHHHHHHHHH
Confidence 5666654 156799999999998777889999999998764
No 9
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.62 E-value=1.2e-14 Score=135.77 Aligned_cols=139 Identities=17% Similarity=0.097 Sum_probs=96.8
Q ss_pred CCCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEE
Q 012812 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 328 (456)
Q Consensus 249 ~~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~ 328 (456)
..+.+||||||||..- ...+|..|++.|++.|..++|||||||||...++.. + ....+|...+
T Consensus 9 ~~~~~l~v~s~Ni~g~-------------~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~-l---~~~~~~~~~~ 71 (256)
T 4fva_A 9 LKGFEVSVMSWNIDGL-------------DGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAP-I---DKLQSLYKIY 71 (256)
T ss_dssp CTTCEEEEEEEECCTT-------------CCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHH-H---HGGGGTEEEE
T ss_pred CCCCEEEEEEEecCCC-------------CCcCHHHHHHHHHHHHHHcCCCEEEEEecChhHhHH-H---HHhcCCceEe
Confidence 3556899999999521 124689999999999999999999999998765432 1 1233444443
Q ss_pred eeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCC
Q 012812 329 KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQG 408 (456)
Q Consensus 329 ~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~ 408 (456)
.... ....|+|||++ +++.......+.|.... ....++++.++.
T Consensus 72 ~~~~--------~~~~g~~il~~-~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~------ 115 (256)
T 4fva_A 72 YSNK--------GCQYYTAILVS-KMFDVEKHDVIHFQNSG---------------------MYRTLQILEGSI------ 115 (256)
T ss_dssp ESST--------TSSSEEEEEEE-TTCEEEEEEEEECTTCS---------------------SCCEEEEEEEEE------
T ss_pred ecCC--------CCCcceEEEEe-ecccceecccccCCCCc---------------------ccceeEEEEEEe------
Confidence 3221 24589999987 46777777766665421 112344444443
Q ss_pred CCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHH
Q 012812 409 ADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLS 445 (456)
Q Consensus 409 ~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~ 445 (456)
.++.|.|+||||.+.......|..|+..+++.
T Consensus 116 -----~g~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~ 147 (256)
T 4fva_A 116 -----GGLKVFLLNTHLESTREHRPQRCAQFGFCMDK 147 (256)
T ss_dssp -----TTEEEEEEEEECCCSGGGHHHHHHHHHHHHHH
T ss_pred -----CCeEEEEEEecCCCCCcchHHHHHHHHHHHHH
Confidence 25679999999999888888999998888765
No 10
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.59 E-value=9.6e-15 Score=141.82 Aligned_cols=158 Identities=15% Similarity=0.152 Sum_probs=101.7
Q ss_pred CCCcEEEEecccccCccCCCCCCCCCCCcccCh--HHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHh-hcCCee
Q 012812 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSW--AYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQA 326 (456)
Q Consensus 250 ~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W--~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~-~~GY~g 326 (456)
.++.||||||||+... ...+ + .| +.|...|.++|...+|||||||||+.....+.+...|. .++|..
T Consensus 7 ~~~~lrv~t~Ni~~~~---~~~~---~----~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~ 76 (301)
T 1zwx_A 7 YPGNFKITSHNVYLFS---RNIY---P----NWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQT 76 (301)
T ss_dssp CCCSCEEEEEEEEECC---TTTS---T----TSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEEC
T ss_pred CCCceEEEEEECccCC---cccc---C----CCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCccc
Confidence 4568999999999742 1111 1 35 78999999999999999999999986653233344444 344543
Q ss_pred EEeeccCccc-------CCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEE
Q 012812 327 LYKRKTNEVY-------NGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVV 399 (456)
Q Consensus 327 ~~~~K~~~~~-------~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~ 399 (456)
.+..+..... .+......|+||| |||++++...+.|..... .... ..+.++++.
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~G~ail---Sr~pi~~~~~~~~~~~~~-----------~~~~-----~~r~~~~~~ 137 (301)
T 1zwx_A 77 PVIGRSKHGWDKTEGNYSNFALEDGGVAVV---SQWPIVEKSQHIFQRGGG-----------ADRL-----SNKGFAYVK 137 (301)
T ss_dssp CCTTSCSTTCSEEEC-----CCBCCCCEEE---ESSCEEEEEEEECSCCCG-----------GGGG-----BCCEEEEEE
T ss_pred cccCCccccccccccccccccccCCCEEEE---ecCCcccceEEEecCCCC-----------cccc-----cCCCeEEEE
Confidence 3222110000 0011234799999 999999998888764210 0111 123567777
Q ss_pred eeecccCCCCCCCCCCceEEEEEeccCCCC------CChhhHHHHHHHHHHHhh
Q 012812 400 LEAKFSNQGADTPGKRQLLCVANTHVNVHQ------ELKDVKLWQVLIILLSSI 447 (456)
Q Consensus 400 Le~~~~~~~~~~~~~~~~l~VaNTHL~~~P------~~~dVRL~Q~~~Ll~~~~ 447 (456)
++. .++.|.|+||||.+.. .....|..|+..|++.+-
T Consensus 138 ~~~-----------~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~ 180 (301)
T 1zwx_A 138 IMK-----------NGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIA 180 (301)
T ss_dssp EEE-----------TTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE-----------CCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 775 1467999999998752 256789999999887643
No 11
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.59 E-value=2.1e-14 Score=146.23 Aligned_cols=139 Identities=19% Similarity=0.126 Sum_probs=97.5
Q ss_pred CCCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEE
Q 012812 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 328 (456)
Q Consensus 249 ~~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~ 328 (456)
.++..||||||||..- ...+|..|+..|++.|..++|||||||||...++.. +... ..+|..++
T Consensus 115 ~~~~~lkVlSWNI~Gl-------------~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~~~-l~~~--~~~y~~~~ 178 (362)
T 4gew_A 115 LKGFEVSVMSWNIDGL-------------DGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAP-IDKL--QSLYKIYY 178 (362)
T ss_dssp TTTCEEEEEEEECCTT-------------CCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHH-HHGG--GGTEEEEE
T ss_pred CCCCeEEEEEEEeCCC-------------CCcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHhHH-HHHh--cCCceEEe
Confidence 3567899999999521 124688999999999999999999999997665432 2221 12455443
Q ss_pred eeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCC
Q 012812 329 KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQG 408 (456)
Q Consensus 329 ~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~ 408 (456)
... ....|+|||+|+ ++.+.....+.+.... ..+.++++.++.
T Consensus 179 ~~~---------~~~~G~aIlsk~-~i~~~~~~~~~~~~~~---------------------~~r~~l~~~i~~------ 221 (362)
T 4gew_A 179 SNK---------GCQYYTAILVSK-MFDVEKHDVIHFQNSG---------------------MYRTLQILEGSI------ 221 (362)
T ss_dssp SST---------TSSSEEEEEEET-TEEEEEEEEEECTTCS---------------------SCCEEEEEEEEE------
T ss_pred CCC---------CCCceEEEEEec-cCccccccccCCCCCc---------------------ccceEEEEEEEE------
Confidence 322 135899999875 6777776666544321 122455555554
Q ss_pred CCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHH
Q 012812 409 ADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLS 445 (456)
Q Consensus 409 ~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~ 445 (456)
.+..|.|+||||.+.......|..|+..+++.
T Consensus 222 -----~g~~l~v~ntHL~s~~~~~~~R~~Q~~~l~~~ 253 (362)
T 4gew_A 222 -----GGLKVFLLNTHLESTREHRPQRCAQFGFCMDK 253 (362)
T ss_dssp -----TTEEEEEEEEECCCSGGGHHHHHHHHHHHHHH
T ss_pred -----CCEEEEEEEecCCccccchhHHHHHHHHHHHH
Confidence 25679999999999887888999999888765
No 12
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.55 E-value=3e-14 Score=141.64 Aligned_cols=162 Identities=13% Similarity=0.072 Sum_probs=101.5
Q ss_pred CCCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHh-hcCCeeE
Q 012812 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQAL 327 (456)
Q Consensus 249 ~~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~-~~GY~g~ 327 (456)
.+...||||||||+...+.. .....|..|.++|...|..++|||||||||+.....+.+...|. .++|...
T Consensus 25 ~~~~~lrV~T~Ni~~~~~~~--------~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~~~ 96 (317)
T 3i41_A 25 KDDTDLKLVSHNVYMLSTVL--------YPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTP 96 (317)
T ss_dssp ---CCCCEEEEEEEECCTTT--------STTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECC
T ss_pred CCCCceEEEEEecccCcccc--------CCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcccc
Confidence 35678999999999753221 12236999999999999999999999999986643333444454 3444321
Q ss_pred EeeccCc-------ccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEe
Q 012812 328 YKRKTNE-------VYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVL 400 (456)
Q Consensus 328 ~~~K~~~-------~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~L 400 (456)
+....+. .+........|+||| |||++++...+.|..... .+...+ +.++.+.+
T Consensus 97 ~~g~~~~~~~~~~~~y~~~~~~~~G~~il---Sr~Pi~~~~~~~~~~~~~-----------~d~~~~-----r~~~~~~i 157 (317)
T 3i41_A 97 VLGRSQSGWDKTEGSYSSTVAEDGGVAIV---SKYPIKEKIQHVFKSGCG-----------FDNDSN-----KGFVYTKI 157 (317)
T ss_dssp CTTSCSTTCSEEEESCCSSCSBCCCCEEE---ESSCEEEEEEEECSCCCS-----------SGGGBC-----CEEEEEEE
T ss_pred cCCccccCccCcccccccccccCCccEEE---eCCCCccceeEECCCCCC-----------cccccC-----cceEEEEE
Confidence 1111110 000001122599999 999999988887764210 011112 24555655
Q ss_pred eecccCCCCCCCCCCceEEEEEeccCCCCC------ChhhHHHHHHHHHHHhhh
Q 012812 401 EAKFSNQGADTPGKRQLLCVANTHVNVHQE------LKDVKLWQVLIILLSSIF 448 (456)
Q Consensus 401 e~~~~~~~~~~~~~~~~l~VaNTHL~~~P~------~~dVRL~Q~~~Ll~~~~~ 448 (456)
+. .++.|.|.||||.+... ....|..|+..|.+.+-.
T Consensus 158 ~~-----------~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~ 200 (317)
T 3i41_A 158 EK-----------NGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKK 200 (317)
T ss_dssp EE-----------TTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred EE-----------CCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 54 15679999999998542 478999999998876543
No 13
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.45 E-value=9.7e-13 Score=127.70 Aligned_cols=158 Identities=17% Similarity=0.186 Sum_probs=97.7
Q ss_pred CCCcEEEEecccccCccCCCCCCCCCCCcccCh--HHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhh-cCCee
Q 012812 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSW--AYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDK-HGYQA 326 (456)
Q Consensus 250 ~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W--~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~-~GY~g 326 (456)
.+..||||||||+... ...+ -.| +.|..++...|...+|||||||||......+.+...|.. ++|..
T Consensus 6 ~~~~lrv~t~Ni~~~~---~~~~-------~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~ 75 (306)
T 2ddr_A 6 QNDTLKVMTHNVYMLS---TNLY-------PNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQT 75 (306)
T ss_dssp -CCEEEEEEEEEEECC---TTTC-------TTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEEC
T ss_pred CCCEEEEEEEECccCc---cccc-------CCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCcee
Confidence 4568999999998642 1111 135 678899988899999999999999876532333334432 23321
Q ss_pred EEeeccCc-c-------cCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEE
Q 012812 327 LYKRKTNE-V-------YNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIV 398 (456)
Q Consensus 327 ~~~~K~~~-~-------~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv 398 (456)
.+..+... . +........|+||| |||+++....+.|.... ..... ..+.++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~ail---Sr~pi~~~~~~~~~~~~-----------~~~~~-----~~r~~~~~ 136 (306)
T 2ddr_A 76 AVLGRSSGSEWDKTLGNYSSSTPEDGGVAIV---SKWPIAEKIQYVFAKGC-----------GPDNL-----SNKGFVYT 136 (306)
T ss_dssp CCTTSCCSTTSSEEEESCCTTCSSCCCCEEE---ESSCEEEEEEEECSCCC---------------C-----CCCEEEEE
T ss_pred eccCcccccccccccccccccCccCCeEEEE---ECCCcccccEEEcCCCC-----------Ccchh-----cCCCeEEE
Confidence 11111000 0 00011245799999 88999988777765321 00001 12356777
Q ss_pred EeeecccCCCCCCCCCCceEEEEEeccCCCC------CChhhHHHHHHHHHHHhh
Q 012812 399 VLEAKFSNQGADTPGKRQLLCVANTHVNVHQ------ELKDVKLWQVLIILLSSI 447 (456)
Q Consensus 399 ~Le~~~~~~~~~~~~~~~~l~VaNTHL~~~P------~~~dVRL~Q~~~Ll~~~~ 447 (456)
.++.. ++.|.|+||||.+.. .....|..|+..|++.+-
T Consensus 137 ~i~~~-----------g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~ 180 (306)
T 2ddr_A 137 KIKKN-----------DRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIK 180 (306)
T ss_dssp EEEET-----------TEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHH
T ss_pred EEEeC-----------CEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHH
Confidence 77751 467999999998752 356789999998877643
No 14
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.31 E-value=1.1e-11 Score=117.26 Aligned_cols=131 Identities=17% Similarity=0.127 Sum_probs=84.4
Q ss_pred EEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeeccC
Q 012812 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (456)
Q Consensus 254 frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K~~ 333 (456)
||||||||.. |..|.+.|++.|..++||||||||+..... .+....|...||..++..+.
T Consensus 1 lrv~t~Nv~~------------------~~~~~~~i~~~i~~~~~Dii~LQE~~~~~~-~~~~~~l~~~gy~~~~~~~~- 60 (268)
T 1ako_A 1 MKFVSFNING------------------LRARPHQLEAIVEKHQPDVIGLQETKVHDD-MFPLEEVAKLGYNVFYHGQK- 60 (268)
T ss_dssp CEEEEEECSC------------------GGGCHHHHHHHHHHHCCSEEEEECCCCCGG-GCCHHHHHHTTCEEEEEEET-
T ss_pred CEEEEEehhH------------------HHHHHHHHHHHHHHcCCCEEEEEeccCChh-hCCHhHhccCCCcEEEeCCC-
Confidence 6899999973 123677899999999999999999976542 23344566679998876432
Q ss_pred cccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCCCCCCC
Q 012812 334 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 413 (456)
Q Consensus 334 ~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~~~~~~ 413 (456)
...|+|||+|...+.+ . ..+... .....| .++.+.++..
T Consensus 61 --------~~~G~ailsr~~~~~~---~-~~~~~~--------------~~~~~~-----~~~~~~~~~~---------- 99 (268)
T 1ako_A 61 --------GHYGVALLTKETPIAV---R-RGFPGD--------------DEEAQR-----RIIMAEIPSL---------- 99 (268)
T ss_dssp --------TEEEEEEEESSCCSEE---E-ESSTTC--------------CHHHHT-----TEEEEEEEET----------
T ss_pred --------CcceEEEEEecCccee---e-eCCCCc--------------ccccCC-----CEEEEEEEcC----------
Confidence 3489999966543332 1 111100 001112 3456666541
Q ss_pred CCceEEEEEeccCCCCCC-----hhhHHHHHHHHHHHh
Q 012812 414 KRQLLCVANTHVNVHQEL-----KDVKLWQVLIILLSS 446 (456)
Q Consensus 414 ~~~~l~VaNTHL~~~P~~-----~dVRL~Q~~~Ll~~~ 446 (456)
+..|.|+||||.+.... -..|..|+..|.+.+
T Consensus 100 -~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~ 136 (268)
T 1ako_A 100 -LGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYL 136 (268)
T ss_dssp -TEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHH
Confidence 34699999999875422 246888888877654
No 15
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.22 E-value=8.8e-11 Score=110.30 Aligned_cols=71 Identities=24% Similarity=0.372 Sum_probs=54.6
Q ss_pred EEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeeccC
Q 012812 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (456)
Q Consensus 254 frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K~~ 333 (456)
||||||||. .|..|.+.|++.|+.++||||||||+..... ++....|...||..++..+.
T Consensus 1 lrv~t~Nv~------------------~~~~~~~~i~~~i~~~~~DIv~LQE~~~~~~-~~~~~~~~~~gy~~~~~~~~- 60 (256)
T 2jc4_A 1 MKITTWNVN------------------SLNVRLPQVQNLLADNPPDILVLQELKLDQD-KFPAAALQMMGWHCVWSGQK- 60 (256)
T ss_dssp CEEEEEECS------------------CHHHHHHHHHHHHHSSCCSEEEEECCCSCGG-GSCHHHHHTTTCEEEEECCS-
T ss_pred CEEEEEEcC------------------CcHHHHHHHHHHHHhcCCCEEEEEeeccchh-cCCHhHHhhcCCeEEECCCC-
Confidence 689999996 2677889999999999999999999986653 23344566679988765321
Q ss_pred cccCCCCCCcceeEEeEec
Q 012812 334 EVYNGNPHTIDGCATFFRR 352 (456)
Q Consensus 334 ~~~~~~~~~~dG~AIFyr~ 352 (456)
...|+|||+|.
T Consensus 61 --------~~~G~ailsr~ 71 (256)
T 2jc4_A 61 --------TYNGVAIVSRS 71 (256)
T ss_dssp --------SSCCEEEEESS
T ss_pred --------cceEEEEEECC
Confidence 34799999664
No 16
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.18 E-value=2.1e-10 Score=109.92 Aligned_cols=129 Identities=17% Similarity=0.299 Sum_probs=76.1
Q ss_pred EEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcC--CCcEEEeccccchh---HHhhhHHhHhh---cCCe
Q 012812 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGY--RADIVCLQEVQNDH---FEEFFAPELDK---HGYQ 325 (456)
Q Consensus 254 frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~--~aDIICLQEVd~~~---~~d~~~~~L~~---~GY~ 325 (456)
||||||||+.. .. - .+|...+++.|... +|||||||||+... ..+ +...|.. .+|.
T Consensus 1 lrv~s~NI~~~--g~-----------~--~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~-l~~~L~~~~~~~y~ 64 (260)
T 2a40_B 1 LKIAAFNIRTF--GE-----------T--KMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGK-LLDYLNQDDPNTYH 64 (260)
T ss_dssp CEEEEEEEEEE--SH-----------H--HHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHH-HHHHHTSSSTTSCE
T ss_pred CEEEEEehhhh--CC-----------C--ccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHH-HHHHHHhccCCCcE
Confidence 68999999852 10 0 12444455555543 89999999998642 333 4445532 2377
Q ss_pred eEEeeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEeeeccc
Q 012812 326 ALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFS 405 (456)
Q Consensus 326 g~~~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~ 405 (456)
.+.....+ .....+++|++||+++|++++... ++.... .+ ....+.| ..+++.++...+
T Consensus 65 ~v~~~~~~-----~~~~~~~~~~ly~~~~v~~~~~~~--~~~~~~------~~---~~~~~~R-----~p~~~~~~~~~~ 123 (260)
T 2a40_B 65 YVVSEPLG-----RNSYKERYLFLFRPNKVSVLDTYQ--YDDGCE------SC---GNDSFSR-----EPAVVKFSSHST 123 (260)
T ss_dssp EEECCCBC-----SSSCCBEEEEEECTTTCEEEEEEE--CCTTST------TT---HHHHCSS-----CCEEEEEECTTS
T ss_pred EEEcccCC-----CCCCcEEEEEEEcCceeEecCcee--ccCCCc------CC---CCCceee-----CCEEEEEEeCCC
Confidence 66554322 112457899999999999988743 332110 00 1122334 335566665311
Q ss_pred CCCCCCCCCCceEEEEEeccCC
Q 012812 406 NQGADTPGKRQLLCVANTHVNV 427 (456)
Q Consensus 406 ~~~~~~~~~~~~l~VaNTHL~~ 427 (456)
.++.|.|+||||.+
T Consensus 124 --------~g~~~~vi~~Hl~~ 137 (260)
T 2a40_B 124 --------KVKEFAIVALHSAP 137 (260)
T ss_dssp --------SSSEEEEEECCCCG
T ss_pred --------CCceEEEEEecCCC
Confidence 15679999999986
No 17
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.09 E-value=1.2e-09 Score=101.18 Aligned_cols=83 Identities=20% Similarity=0.317 Sum_probs=57.2
Q ss_pred CCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEe
Q 012812 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (456)
Q Consensus 250 ~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~ 329 (456)
....+|||||||..- ....|+..|++.|..++||||||||+.... +.+ +.+...||...|.
T Consensus 4 ~~~~lri~t~Nv~g~----------------~~~~~~~~~~~~i~~~~~DIv~LQE~~~~~--~~~-~~l~~~~y~~~~~ 64 (238)
T 1vyb_A 4 SNSHITILTLNINGL----------------NSAIKRHRLASWIKSQDPSVCCIQETHLTC--RDT-HRLKIKGWRKIYQ 64 (238)
T ss_dssp CCCCEEEEEEECSCC----------------CSHHHHHHHHHHHHHHCCSEEEEECCCCCT--TSG-GGCCCTTCCEEEE
T ss_pred CCCcceEEEEecccC----------------CchhhHHHHHHHHHHcCCCEEEEecccCCC--CCc-hhHhhCCCCeEEE
Confidence 345799999999631 224577889999999999999999996432 111 2234458988765
Q ss_pred eccCcccCCCCCCcceeEEeEecC-ceeEe
Q 012812 330 RKTNEVYNGNPHTIDGCATFFRRD-RFSHV 358 (456)
Q Consensus 330 ~K~~~~~~~~~~~~dG~AIFyr~s-rF~ll 358 (456)
..... +..|+|||+|.. .|.+.
T Consensus 65 ~~~~~-------~~~Gvail~r~~~~~~~~ 87 (238)
T 1vyb_A 65 ANGKQ-------KKAGVAILVSDKTDFKPT 87 (238)
T ss_dssp ECCSS-------SSCCEEEEECTTCCCEEE
T ss_pred ccCCC-------CCceEEEEEeCCCCcccc
Confidence 43221 235999999886 56543
No 18
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.04 E-value=1e-09 Score=103.17 Aligned_cols=74 Identities=20% Similarity=0.397 Sum_probs=50.3
Q ss_pred EEEEecccccCccCCCCCCCCCCCcccChHHHHH-HHHHHhhcCCCcEEEeccccchhHHhhhHHhH-hhcCCeeEEeec
Q 012812 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQ-NLLREIIGYRADIVCLQEVQNDHFEEFFAPEL-DKHGYQALYKRK 331 (456)
Q Consensus 254 frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~-~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L-~~~GY~g~~~~K 331 (456)
||||||||... ..+.+ .|++.|..++||||||||+..... + +...+ ...||..+|...
T Consensus 2 l~v~t~Ni~~~------------------~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~~~~~~ 61 (259)
T 2jc5_A 2 LKIISANVNGI------------------RSAYKKGFYEYIAASGADIVCVQELKAQEA-D-LSADMKNPHGMHGHWHCA 61 (259)
T ss_dssp EEEEEEECSSH------------------HHHHHTTHHHHHHHTTCSEEEEECCCCCGG-G-CCHHHHSGGGCEEEEECC
T ss_pred cEEEEEeeccH------------------HHHHHhHHHHHHHhcCCCEEEEEEecchhh-c-cChhhccccCCeEEEecc
Confidence 79999999631 11222 499999999999999999976542 2 22334 356998877643
Q ss_pred cCcccCCCCCCcceeEEeEecCc
Q 012812 332 TNEVYNGNPHTIDGCATFFRRDR 354 (456)
Q Consensus 332 ~~~~~~~~~~~~dG~AIFyr~sr 354 (456)
.. .+..|+|||+|...
T Consensus 62 ~~-------~~~~G~ailsr~~~ 77 (259)
T 2jc5_A 62 EK-------RGYSGVAVYSKRKP 77 (259)
T ss_dssp SS-------TTCCCEEEEESSCC
T ss_pred CC-------CCcceEEEEEecCc
Confidence 11 13479999976643
No 19
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.00 E-value=2e-09 Score=103.54 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=52.7
Q ss_pred CCCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHh-hcCC-ee
Q 012812 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGY-QA 326 (456)
Q Consensus 249 ~~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~-~~GY-~g 326 (456)
.....||||||||.... ...++ .|++.|..++||||||||+..... + +...|. ..|| ..
T Consensus 24 ~~~~~l~v~t~Ni~~~~----------------~~~~~-~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~~ 84 (285)
T 2o3h_A 24 GKPATLKIASWNVDGLR----------------AWIKK-KGLDWVKEEAPDILCLQETKCSEN-K-LPAELQELPGLSHQ 84 (285)
T ss_dssp SCBCCEEEEEEECSSHH----------------HHHHT-THHHHHHHHCCSEEEEECCCCCTT-S-CCGGGGGCGGGCEE
T ss_pred CCccceEEEEEecccCh----------------hhhhh-hHHHHHHhcCCCEEEEEEeecchh-h-ccHHHHhccCCcEE
Confidence 34568999999997311 11111 289999999999999999976531 1 222333 5689 44
Q ss_pred EEeeccCcccCCCCCCcceeEEeEecCceeE
Q 012812 327 LYKRKTNEVYNGNPHTIDGCATFFRRDRFSH 357 (456)
Q Consensus 327 ~~~~K~~~~~~~~~~~~dG~AIFyr~srF~l 357 (456)
++...... .+..|+|||+|...+++
T Consensus 85 ~~~~~~~~------~g~~Gvailsr~~~~~~ 109 (285)
T 2o3h_A 85 YWSAPSDK------EGYSGVGLLSRQCPLKV 109 (285)
T ss_dssp EEECBC--------CCSCCEEEEESSCCSEE
T ss_pred EEecccCC------cccceEEEEEccChHHe
Confidence 44431111 12369999987765554
No 20
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=98.89 E-value=1.8e-08 Score=95.07 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=52.0
Q ss_pred CCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEee
Q 012812 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKR 330 (456)
Q Consensus 251 ~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~ 330 (456)
...+|||||||... ..+...+++.|...+||||||||+....... . . ...||..++..
T Consensus 17 ~~~lri~s~Nv~~~------------------~~~~~~l~~~i~~~~~DIv~lQE~~~~~~~~-~--~-~~~gy~~~~~~ 74 (245)
T 1wdu_A 17 GPPYRVLQANLQRK------------------KLATAELAIEAATRKAAIALIQEPYVGGAKS-M--K-GFRGVRVFQST 74 (245)
T ss_dssp -CCEEEEEEECTTC------------------HHHHHHHHHHHHHHTCSEEEEESCCC---------C-CCSSCEEEECC
T ss_pred Ccceeeeeeecccc------------------HHHHHHHHHHHhhcCCCEEEEEcccccCCcc-c--c-CCCcceEeccc
Confidence 45799999999732 1256679999999999999999997654322 1 1 13478654432
Q ss_pred ccCcccCCCCCCcceeEEeEecCceeEe
Q 012812 331 KTNEVYNGNPHTIDGCATFFRRDRFSHV 358 (456)
Q Consensus 331 K~~~~~~~~~~~~dG~AIFyr~srF~ll 358 (456)
+.. .+..|+|||+++.++++.
T Consensus 75 ~~~-------~~~~GvaIl~~~~~~~~~ 95 (245)
T 1wdu_A 75 AQG-------DGTVKAAIAVFDHDLDVI 95 (245)
T ss_dssp CCT-------TCCCCEEEEECCSSCEEE
T ss_pred ccc-------CCCCCeEEEEECCCcceE
Confidence 111 124699999998888763
No 21
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=98.87 E-value=6.7e-09 Score=102.59 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=47.7
Q ss_pred CCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhH-hhcCCe-eE
Q 012812 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPEL-DKHGYQ-AL 327 (456)
Q Consensus 250 ~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L-~~~GY~-g~ 327 (456)
....||||||||.... .+ . +..|++.|..++||||||||+..... + +...| ...||. .+
T Consensus 58 ~~~~lrv~t~Nv~g~~---------------~~-~-~~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~~~ 118 (318)
T 1hd7_A 58 KPATLKICSWNVDGLR---------------AW-I-KKKGLDWVKEEAPDILCLQETKCSEN-K-LPAELQELPGLSHQY 118 (318)
T ss_dssp CBCCEEEEEEECSSHH---------------HH-H-HTTHHHHHHHHCCSEEEEECCCCCC-------------CCCEEE
T ss_pred CCCceEEEEEecCcch---------------hh-h-hhhHHHHHHhhCCCEEEEEEccCchh-h-ccHHHHhcCCCceEE
Confidence 4567999999997311 01 1 12389999999999999999976431 1 22223 356894 44
Q ss_pred EeeccCcccCCCCCCcceeEEeEecCceeE
Q 012812 328 YKRKTNEVYNGNPHTIDGCATFFRRDRFSH 357 (456)
Q Consensus 328 ~~~K~~~~~~~~~~~~dG~AIFyr~srF~l 357 (456)
+..... ..+..|+|||+|...+.+
T Consensus 119 ~~~~~~------~~g~~Gvailsr~~~~~~ 142 (318)
T 1hd7_A 119 WSAPSD------KEGYSGVGLLSRQCPLKV 142 (318)
T ss_dssp EECC-----------CCCEEEEESSCCSEE
T ss_pred EecCCC------CCccceEEEEEcCCceeE
Confidence 433111 112369999977665443
No 22
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=98.85 E-value=1.8e-08 Score=94.90 Aligned_cols=71 Identities=18% Similarity=0.374 Sum_probs=49.3
Q ss_pred EEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeeccC
Q 012812 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (456)
Q Consensus 254 frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K~~ 333 (456)
||||||||..- ..|.+.|++.|+.++||||||||+.... ..+-...+...||..++..+.
T Consensus 2 lrv~t~Nv~g~------------------~~~~~~i~~~i~~~~~Dii~lQE~~~~~-~~~~~~~~~~~gy~~~~~~~~- 61 (257)
T 2voa_A 2 LKIATFNVNSI------------------RSRLHIVIPWLKENKPDILCMQETKVEN-RKFPEADFHRIGYHVVFSGSK- 61 (257)
T ss_dssp EEEEEEECSCG------------------GGTHHHHHHHHHHHCCSEEEEECCCCCG-GGCCHHHHHTTTCEEEEEEET-
T ss_pred eEEEEEecCCh------------------HHHHHHHHHHHhhcCCCEEEEEEeecch-hhcCHHHhhhCCCcEEEcCCC-
Confidence 79999999631 1234679999999999999999997532 111122345679987765321
Q ss_pred cccCCCCCCcceeEEeEec
Q 012812 334 EVYNGNPHTIDGCATFFRR 352 (456)
Q Consensus 334 ~~~~~~~~~~dG~AIFyr~ 352 (456)
...|+|||+|.
T Consensus 62 --------~~~G~ailsr~ 72 (257)
T 2voa_A 62 --------GRNGVAIASLE 72 (257)
T ss_dssp --------TEEEEEEEESS
T ss_pred --------CccEEEEEEcc
Confidence 24799999664
No 23
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=98.79 E-value=1.9e-08 Score=95.98 Aligned_cols=78 Identities=22% Similarity=0.437 Sum_probs=52.6
Q ss_pred cEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHh-hcCCeeEEeec
Q 012812 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQALYKRK 331 (456)
Q Consensus 253 ~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~-~~GY~g~~~~K 331 (456)
.+||+||||.. +....++ .|+++|..++||||||||+..... . +...+. ..||..++...
T Consensus 3 ~l~i~s~Nv~g----------------~~~~~~~-~l~~~i~~~~~DIv~LQEt~~~~~-~-~~~~~~~~~gy~~~~~~~ 63 (265)
T 3g91_A 3 VLKIISWNVNG----------------LRAVHRK-GFLKWFMEEKPDILCLQEIKAAPE-Q-LPRKLRHVEGYRSFFTPA 63 (265)
T ss_dssp EEEEEEEECSC----------------HHHHHHH-THHHHHHHHCCSEEEEECCCSCGG-G-SCHHHHCCTTCEEEEECB
T ss_pred ccEEEEEEcCC----------------chhhhhh-hHHHHHHhcCCCEEEEEecccccc-c-cChhhhcccCCcEEEccC
Confidence 58999999963 1222222 589999999999999999965541 2 223343 57999877654
Q ss_pred cCcccCCCCCCcceeEEeEecCcee
Q 012812 332 TNEVYNGNPHTIDGCATFFRRDRFS 356 (456)
Q Consensus 332 ~~~~~~~~~~~~dG~AIFyr~srF~ 356 (456)
.. .+..|+|||+|...+.
T Consensus 64 ~~-------~~~~Gvail~k~~~~~ 81 (265)
T 3g91_A 64 ER-------KGYSGVAMYTKVPPSS 81 (265)
T ss_dssp SS-------TTSCCEEEEESSCCSE
T ss_pred CC-------CCcCEEEEEEecChHH
Confidence 22 2347999997765443
No 24
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=98.74 E-value=3.2e-08 Score=104.27 Aligned_cols=83 Identities=14% Similarity=0.245 Sum_probs=54.6
Q ss_pred CCCcEEEEecccccCccCCCCCCCCCCCcccChHHHH-HHHHHHhhcCCCcEEEeccccchhHHhhhH--HhHh-hcCCe
Q 012812 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRR-QNLLREIIGYRADIVCLQEVQNDHFEEFFA--PELD-KHGYQ 325 (456)
Q Consensus 250 ~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk-~~Il~eI~~~~aDIICLQEVd~~~~~d~~~--~~L~-~~GY~ 325 (456)
....||||||||..- ..|..|. ..|.+.|..++||||||||+.... +.+. ..|. ..||.
T Consensus 146 ~~~~LKI~TwNVnGl---------------~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~--~~~~~~~~la~~~GY~ 208 (467)
T 2j63_A 146 PSRMYKFITWNVAGL---------------RGLLKKNASALRAFMEAEKPDVLCLQETKLNV--DEADANATLGVVDGYS 208 (467)
T ss_dssp TTTEEEEEEEECSCH---------------HHHHHHCTTHHHHHHHHHCCSEEEEECCCCCT--TCHHHHHTSSCCTTEE
T ss_pred CCCCeEEEEEEcCCC---------------cccccccHHHHHHHHHHcCCCEEEEEecccch--hccchHHHHhhcCCce
Confidence 456799999999631 1233332 679999999999999999997532 1111 1243 46898
Q ss_pred eEEeeccCcccCCCCCCcceeEEeEecCce
Q 012812 326 ALYKRKTNEVYNGNPHTIDGCATFFRRDRF 355 (456)
Q Consensus 326 g~~~~K~~~~~~~~~~~~dG~AIFyr~srF 355 (456)
.+|....+ ..+..|+|||+|...+
T Consensus 209 ~~~~~~~~------~~g~~GVAIlsR~pi~ 232 (467)
T 2j63_A 209 FVDHPCAF------KRGYSGTRTYMKNSTT 232 (467)
T ss_dssp EEEECCSS------STTSCCEEEEEECCCC
T ss_pred EEEecccC------CCCcceEEEEEeCCcc
Confidence 77654211 1234799999887654
No 25
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=98.74 E-value=3.6e-09 Score=104.08 Aligned_cols=142 Identities=13% Similarity=0.036 Sum_probs=85.0
Q ss_pred CCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcE--EEeccccchh--------HHhhhHHhHh
Q 012812 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI--VCLQEVQNDH--------FEEFFAPELD 320 (456)
Q Consensus 251 ~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDI--ICLQEVd~~~--------~~d~~~~~L~ 320 (456)
.-+++||||||....- +....+|- ..|...+||| |||||++... +.+.+...|.
T Consensus 6 ~~~i~V~T~Nv~~~~~---------~~~l~~wl-------~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~ 69 (282)
T 2imq_X 6 QLSVHTVSWNSGHERA---------PTNLEELL-------GLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLT 69 (282)
T ss_dssp EEEEEEEEEEEETCCC---------CSCCHHHH-------TCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCCcC---------chhHHHHh-------cccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcC
Confidence 3469999999975421 11222333 2355789996 5999998542 2344555555
Q ss_pred hcCCeeEEeeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCcEEEEEEe
Q 012812 321 KHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVL 400 (456)
Q Consensus 321 ~~GY~g~~~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dnValiv~L 400 (456)
..+|..+.....+ ..+..++||+|.+.++.++...+ ... .. .+..+-|+.+.+
T Consensus 70 ~~~Y~~v~~~~~~-------~~G~~l~vf~k~~~~~~i~~~~~--~~~----~g--------------~~g~kGav~~r~ 122 (282)
T 2imq_X 70 SKGYTKLKNTITE-------TMGLTVYCLEKHLDQNTLKNETI--IVT----VD--------------DQKKSGGIVTSF 122 (282)
T ss_dssp HTTEEEEEEEECS-------SEEEEEEEEGGGCCTTTCCCEEE--EEE----CS--------------TTSCSEEEEEEE
T ss_pred CCceEEEEeccCc-------eeEEEEEEEEccccCccceeeee--ccc----cc--------------cccCCceEEEEE
Confidence 4466655432111 13477889989888877665432 110 00 012235666666
Q ss_pred eecccCCCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHh
Q 012812 401 EAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSS 446 (456)
Q Consensus 401 e~~~~~~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~ 446 (456)
+. .+..|++.||||..+......|..|++.|++.+
T Consensus 123 ~~-----------~~~~~~fvn~HL~~~~~~~~~R~~~~~~I~~~~ 157 (282)
T 2imq_X 123 TI-----------YNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYS 157 (282)
T ss_dssp EE-----------TTEEEEEEEEECCTTCCCTTSSSSSCCGGGCTT
T ss_pred EE-----------CCEEEEEEEECCCCCCchHHHHHHHHHHHHHhh
Confidence 64 146799999999997554566777777776653
No 26
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=98.24 E-value=1.2e-06 Score=85.52 Aligned_cols=137 Identities=13% Similarity=0.064 Sum_probs=81.4
Q ss_pred CCCCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCC-CcEEEeccccch------hHH---hh---h
Q 012812 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR-ADIVCLQEVQND------HFE---EF---F 315 (456)
Q Consensus 249 ~~~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~-aDIICLQEVd~~------~~~---d~---~ 315 (456)
.....||||||||..-...+ .-+|. .-|.+.|.+++ +||+.|||++.. .-. .. .
T Consensus 11 ~~~~~~kV~TwNiqgs~~~t----------eskw~---~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v 77 (262)
T 2f1n_A 11 TDLTDFRVATWNLQGASATT----------ESKWN---INVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPV 77 (262)
T ss_dssp CCGGGCCEEEEEEEECTTSC----------HHHHH---THHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCC
T ss_pred cccceeEEEEEEcCCCCCCC----------ccccc---ccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCH
Confidence 35568999999998643211 12452 23666889988 999999999844 111 00 1
Q ss_pred HHhHhhcC------CeeEEeeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhc
Q 012812 316 APELDKHG------YQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRL 389 (456)
Q Consensus 316 ~~~L~~~G------Y~g~~~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~ 389 (456)
.+.+..+| +.++|..+... .....|.||+ |||+..+.. -+.... .. +|
T Consensus 78 ~E~~w~lGt~srp~~~yiY~~~~D~-----~~~r~nlAIl---Sr~~adev~--vLp~~~--------------~~-~R- 131 (262)
T 2f1n_A 78 RELIWNLSTNSRPQQVYIYFSAVDA-----LGGRVNLALV---SNRRADEVF--VLSPVR--------------QG-GR- 131 (262)
T ss_dssp EEEEEECCSSSSSCEEEEEEECSCS-----SSCSSCEEEE---ESSCCSEEE--EECCSS--------------TT-CC-
T ss_pred HHHHHHhCCCCCCceEEEEEeeccC-----CCCceeeEEE---EcccccceE--ECCCCC--------------CC-CC-
Confidence 11223556 88888766321 1246899999 888877432 222110 00 23
Q ss_pred ccCcEEEEEEeeecccCCCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHH
Q 012812 390 VKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLS 445 (456)
Q Consensus 390 ~~dnValiv~Le~~~~~~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~ 445 (456)
-++-+.+. + ++++|||+..+. +.-+..|+..+.+.
T Consensus 132 ----p~lgiri~--------------~-~~ff~tHa~a~~--g~da~a~v~~I~~~ 166 (262)
T 2f1n_A 132 ----PLLGIRIG--------------N-DAFFTAHAIAMR--NNDAPALVEEVYNF 166 (262)
T ss_dssp ----CEEEEEET--------------T-EEEEEEECCSSS--SCSHHHHHHHHHHH
T ss_pred ----ceEEEEEC--------------C-EEEEEEEecCCC--CccHHHHHHHHHHH
Confidence 22222221 1 789999999974 34477777777664
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=98.14 E-value=6.6e-06 Score=80.47 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=31.8
Q ss_pred CcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhc-CCCcEEEeccccch
Q 012812 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIG-YRADIVCLQEVQND 309 (456)
Q Consensus 252 ~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~-~~aDIICLQEVd~~ 309 (456)
..||||||||+..... ..-+|+. .|++.|.+ .++||+.|||++..
T Consensus 3 ~~~kv~TwNi~g~~~~----------~~~k~~~---~i~~~i~~~~~~DIlaLQEa~~~ 48 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAV----------NESKWNI---NVRQLLSGEQGADILMVQEAGSL 48 (261)
T ss_dssp GGSCEEEEECCCCSSS----------SHHHHHH---HHHHHHCSTTCCSEEEEESCCSC
T ss_pred cccEEEEEEcCCCCCC----------Chhhhhh---HHHHHHcCCCCCCEEEEecCCCC
Confidence 3588999999852211 1113333 68889999 77999999999863
No 28
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=97.98 E-value=2.4e-05 Score=79.75 Aligned_cols=145 Identities=15% Similarity=0.125 Sum_probs=81.3
Q ss_pred CcEEEEecccccCccCCCCCCCCCCCccc-ChHHHHHHHHHHhhcCCCcE--EEeccccchhHHhhhHHhHh-hcCCeeE
Q 012812 252 GTFSVLSYNILSDVYATSESYSYCPSWAL-SWAYRRQNLLREIIGYRADI--VCLQEVQNDHFEEFFAPELD-KHGYQAL 327 (456)
Q Consensus 252 ~~frVmSYNILad~Ya~~~~y~ycp~~~L-~W~yRk~~Il~eI~~~~aDI--ICLQEVd~~~~~d~~~~~L~-~~GY~g~ 327 (456)
-++.|+||||-+..- ++..| +| +...+....||| |+|||+.... ..|...|. .+|..++
T Consensus 26 l~i~v~TwNv~g~~~---------~~~~L~~~------l~~~~~~~~pDI~viGlQEi~~~~--~~W~~~l~~~L~~~Y~ 88 (357)
T 2xsw_A 26 VALFVATWNMQGQKE---------LPPSLDEF------LLPAEADYAQDLYVIGVQEGCSDR--REWETRLQETLGPHYV 88 (357)
T ss_dssp EEEEEEEEECTTCSS---------CCSCCHHH------HSCTTCCSCCSEEEEEEESCCSCH--HHHHHHHHHHHCTTEE
T ss_pred ceEEEEEEecCCCCC---------CcccHHHH------hccccccCCCCEEEEEeeeccchH--HHHHHHHHHHhCCccc
Confidence 468999999975321 11222 22 222344578997 8999997642 22333443 4565544
Q ss_pred EeeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhhcccCc-EEEEEEeeecccC
Q 012812 328 YKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDN-VALIVVLEAKFSN 406 (456)
Q Consensus 328 ~~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R~~~dn-Valiv~Le~~~~~ 406 (456)
+... ..+ .+-+++||-|++....+.......-... + -..+ .| -|+.+.+..
T Consensus 89 ~v~s-~~l------~g~~l~Vfvr~~~~~~i~~v~~~~v~tG------~----------~g~~-gNKGav~vr~~~---- 140 (357)
T 2xsw_A 89 LLSS-AAH------GVLYMSLFIRRDLIWFCSEVECSTVTTR------I----------VSQI-KTKGALGISFTF---- 140 (357)
T ss_dssp EEEE-EEE------TTEEEEEEEEGGGGGGBBCCEEEEEEEE------E----------EETT-EEEEEEEEEEEE----
T ss_pred chhh-hhh------hhEEEEEEEchHHhhcCceeEecccccc------c----------cccc-ccccEEEEEEEE----
Confidence 4322 111 2467899977764333332221111110 0 0001 12 233444443
Q ss_pred CCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHhhh
Q 012812 407 QGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSSIF 448 (456)
Q Consensus 407 ~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~~~ 448 (456)
.+..|+++|+||..+...-+-|..|...|++.+.+
T Consensus 141 -------~~t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~~~l~f 175 (357)
T 2xsw_A 141 -------FGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVL 175 (357)
T ss_dssp -------TTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC
T ss_pred -------CCeEEEEEEEccCCCCchHHHHHHHHHHHHHHhcc
Confidence 14579999999999987778899999999988643
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=97.94 E-value=0.00011 Score=74.48 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=79.7
Q ss_pred CCcEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhh---cCCCcE--EEeccccc-h-------------hH
Q 012812 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREII---GYRADI--VCLQEVQN-D-------------HF 311 (456)
Q Consensus 251 ~~~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~---~~~aDI--ICLQEVd~-~-------------~~ 311 (456)
.-++.|+||||-... |+.. |.+.|. ...||| |||||+-. . .+
T Consensus 24 ~~~i~v~TwNv~g~~----------~~~~---------l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w 84 (347)
T 1i9z_A 24 NVKIFVASYNLNGCS----------ATTK---------LENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREW 84 (347)
T ss_dssp EEEEEEEEEECTTCC----------CCSC---------CHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHH
T ss_pred CcEEEEEeEecCCCC----------Cchh---------HHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHH
Confidence 457899999996532 1111 334444 368999 99999832 1 12
Q ss_pred HhhhHHhHhhc---CCeeEEeeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEccccccccccccCCchhhhhhhhh
Q 012812 312 EEFFAPELDKH---GYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNR 388 (456)
Q Consensus 312 ~d~~~~~L~~~---GY~g~~~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~~~~~~d~~~~~~~~~~~~~R 388 (456)
.+.+...|... ++.+..... ..+ .+-+++||.|.+-...+..-....-... + .-
T Consensus 85 ~~~i~~~L~~~~~~~~~Y~~v~s-~~l------~g~~L~Vfvr~~~~~~i~~v~~~~v~tG------~----------~g 141 (347)
T 1i9z_A 85 ESCVKRLLNGKCTSGPGYVQLRS-GQL------VGTALMIFCKESCLPSIKNVEGTVKKTG------L----------GG 141 (347)
T ss_dssp HHHHHHHHHHTCCSSCCEEEEEE-EEE------TTEEEEEEEEGGGGGGEEEEEEEEEECC------C----------C-
T ss_pred HHHHHHHHhhcccCCCceeEEEE-eec------cceEEEEEEehHhhhhccceeeeeEecc------C----------CC
Confidence 33344445431 233322211 111 2468899977765444332211111110 0 00
Q ss_pred cccCcEEEEEEeeecccCCCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHhh
Q 012812 389 LVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSSI 447 (456)
Q Consensus 389 ~~~dnValiv~Le~~~~~~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~~ 447 (456)
.+..+=|+.+.+... +..|+++|+||..+....+-|..|...|++.+.
T Consensus 142 ~~gnKGav~vr~~~~-----------~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~ 189 (347)
T 1i9z_A 142 VSGNKGAVAIRFDYE-----------DTGLCFITSHLAAGYTNYDERDHDYRTIASGLR 189 (347)
T ss_dssp ---CCEEEEEEEEET-----------TEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCC
T ss_pred ccCCCceEEEEEEEC-----------CeEEEEEEecCCCCCccHHHHHHHHHHHHHhhc
Confidence 112234555665541 456999999999987777789999999998754
No 30
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=97.52 E-value=9.4e-05 Score=70.55 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=44.3
Q ss_pred cEEEEecccccCccCCCCCCCCCCCcccChHHHHHHHHHHhhcCCCcEEEeccccchhHHhhhHHhHhhcCCeeEEeecc
Q 012812 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT 332 (456)
Q Consensus 253 ~frVmSYNILad~Ya~~~~y~ycp~~~L~W~yRk~~Il~eI~~~~aDIICLQEVd~~~~~d~~~~~L~~~GY~g~~~~K~ 332 (456)
.+||+||||-.- .-|...+++.|.+.+||||||||... ..||. +...
T Consensus 7 ~mki~s~Nvn~~------------------r~~~~~l~~~l~~~~~DIl~LQEt~~------------~~gy~--~~~~- 53 (240)
T 2ei9_A 7 RLRIGQINLGGA------------------EDATRELPSIARDLGLDIVLVQEQYS------------MVGFL--AQCG- 53 (240)
T ss_dssp EEEEEEEECTTC------------------HHHHHTHHHHHHHHTCSEEEEESCCT------------TSSSE--ECCS-
T ss_pred cceEEEEecCcc------------------HHHHHHHHHHHHHcCCCEEEeecceE------------cCCce--Eecc-
Confidence 599999999631 23556699999999999999999941 12776 2111
Q ss_pred CcccCCCCCCcceeEEeEecCceeE
Q 012812 333 NEVYNGNPHTIDGCATFFRRDRFSH 357 (456)
Q Consensus 333 ~~~~~~~~~~~dG~AIFyr~srF~l 357 (456)
+..|+||+.++..+++
T Consensus 54 ---------~~~gvail~~~~~~~~ 69 (240)
T 2ei9_A 54 ---------AHPKAGVYIRNRVLPC 69 (240)
T ss_dssp ---------SSCSEEEEESSTTSCE
T ss_pred ---------CCCCEEEEEecCCcce
Confidence 2468899877644443
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=96.80 E-value=0.017 Score=57.66 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=29.3
Q ss_pred CceEEEEEeccCCCCCChhhHHHHHHHHHHHhhhh
Q 012812 415 RQLLCVANTHVNVHQELKDVKLWQVLIILLSSIFN 449 (456)
Q Consensus 415 ~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~~~n 449 (456)
+..||++|+||..+-+.-+-|..+...|++++.|.
T Consensus 134 ~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~f~ 168 (313)
T 3mtc_A 134 NTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFC 168 (313)
T ss_dssp TEEEEEEEEECCCSGGGHHHHHHHHHHHHHHCCBC
T ss_pred CcEEEEEeeccCCCchHHHHHHHHHHHHHHhcccC
Confidence 35699999999998777778999999999887653
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=96.75 E-value=0.032 Score=55.81 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=66.8
Q ss_pred CCCcEE--Eeccccch--hHHhhhHHhHhh---cCCeeEEeeccCcccCCCCCCcceeEEeEecCceeEeEeEEEEcccc
Q 012812 296 YRADIV--CLQEVQND--HFEEFFAPELDK---HGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKA 368 (456)
Q Consensus 296 ~~aDII--CLQEVd~~--~~~d~~~~~L~~---~GY~g~~~~K~~~~~~~~~~~~dG~AIFyr~srF~ll~~~~i~f~~~ 368 (456)
..+||+ +|||+... .+.+.+...|.. ..|.-+....- .+-+++||.|++.-..+..-....-.+
T Consensus 46 ~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~~L---------~gi~l~Vfvk~~~~~~I~~v~~~~v~t 116 (316)
T 4a9c_A 46 IPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSL---------WNIKVAVLVKPEHENRISHVSTSSVKT 116 (316)
T ss_dssp SCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEEEE---------TTEEEEEEECGGGGGGEEEEEEEEEEE
T ss_pred CCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEeeee---------hheeeeeEEeHHHhhhCcccccceeee
Confidence 457987 99999653 233444444543 34554433221 236788998887555444322211111
Q ss_pred ccccccccCCchhhhhhhhhcccCcEEEEEEeeecccCCCCCCCCCCceEEEEEeccCCCCCChhhHHHHHHHHHHHhhh
Q 012812 369 AQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVLIILLSSIF 448 (456)
Q Consensus 369 ~~~~~d~~~~~~~~~~~~~R~~~dnValiv~Le~~~~~~~~~~~~~~~~l~VaNTHL~~~P~~~dVRL~Q~~~Ll~~~~~ 448 (456)
. +. -.+...=|+.+.|.. .+..||+.|+||..+.+.-+-|..+...|++.+.+
T Consensus 117 G------~~----------g~~GNKGaV~ir~~~-----------~~ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~~l~f 169 (316)
T 4a9c_A 117 G------IA----------NTLGNKGAVGVSFMF-----------NGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSL 169 (316)
T ss_dssp C----------------------CEEEEEEEEEE-----------TTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC
T ss_pred e------ee----------EecCCCceEEEEEEE-----------CCcEEEEEEeccccCchHHHHHHHHHHHHHHhCCC
Confidence 1 00 001111233344443 14579999999999888888999999999987543
No 33
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=94.85 E-value=0.02 Score=43.13 Aligned_cols=37 Identities=24% Similarity=0.639 Sum_probs=30.2
Q ss_pred ccccCCCCCCcceecchhhccCCCCCceeecChHHhHHhHHHHHH
Q 012812 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRV 107 (456)
Q Consensus 63 ~~C~~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~ 107 (456)
..| ..|++.+.++|..|.. .+||+.+|=+..|+.||.
T Consensus 16 ~~C-~~C~~~~~~~Cs~C~~-------v~YCs~~CQ~~~W~~Hk~ 52 (60)
T 2dj8_A 16 ESC-WNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHH 52 (60)
T ss_dssp CCC-SSSCSCCCEECTTTSC-------CEESSHHHHHHTHHHHTT
T ss_pred ccc-ccCCCCCcccCCCCCC-------EeeeCHHHHHHHHHHHHH
Confidence 356 6788888899998853 569999999999998764
No 34
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=94.77 E-value=0.02 Score=43.24 Aligned_cols=37 Identities=24% Similarity=0.639 Sum_probs=30.2
Q ss_pred ccccCCCCCCcceecchhhccCCCCCceeecChHHhHHhHHHHHH
Q 012812 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRV 107 (456)
Q Consensus 63 ~~C~~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~ 107 (456)
..| ..|++.+.++|..|.. .+||+.+|=+..|+.||.
T Consensus 14 ~~C-~~C~~~~~~~Cs~C~~-------v~YCs~~CQ~~dW~~Hk~ 50 (60)
T 2od1_A 14 ESC-WNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHH 50 (60)
T ss_dssp SCC-TTTSSCCCEECTTTSC-------CEESSHHHHHHHHHHHTT
T ss_pred Ccc-ccCCCcccccCCCCCC-------eeecCHHHHHHHHHHHhH
Confidence 456 6888888899998853 569999999999998764
No 35
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=94.55 E-value=0.02 Score=43.58 Aligned_cols=38 Identities=24% Similarity=0.647 Sum_probs=30.7
Q ss_pred ccccCCCCCCcceecchhhccCCCCCceeecChHHhHHhHHHHHHH
Q 012812 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 108 (456)
Q Consensus 63 ~~C~~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~ 108 (456)
..| ..|++.+.++|..|.. .+|||.+|=+..|+.||..
T Consensus 18 ~~C-~~C~~~~~~~Cs~C~~-------~~YCs~~CQ~~~W~~Hk~~ 55 (64)
T 2odd_A 18 ESC-WNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHHI 55 (64)
T ss_dssp SSC-TTTSSCCCEEETTTSC-------CEESSHHHHHHHHHHHTTT
T ss_pred CcC-ccccCCCcccCCCCCC-------hhhCCHHHHHHHHHHHhHH
Confidence 356 6788888899998862 5689999999999987653
No 36
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=94.46 E-value=0.026 Score=44.12 Aligned_cols=40 Identities=23% Similarity=0.558 Sum_probs=32.5
Q ss_pred ccccCCCCCCcceecchhhccCCCCCceeecChHHhHHhHHHHHHHHH
Q 012812 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 110 (456)
Q Consensus 63 ~~C~~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H~ 110 (456)
..| ..|++.+..+|-.|.. .+||+.+|=+..|+.||..=+
T Consensus 16 ~~C-~~C~~~~~~~Cs~Ck~-------v~YCs~eCQ~~~W~~HK~~C~ 55 (70)
T 2d8q_A 16 PRC-AYCSAEASKRCSRCQN-------EWYCCRECQVKHWEKHGKTCV 55 (70)
T ss_dssp CBC-SSSCCBCCCBCTTTSC-------CBCSCHHHHHHTHHHHHHHCC
T ss_pred CcC-CCCCCcccccCCCCCC-------EeeCCHHHhHHHHHHHHHHHH
Confidence 456 7888888889998863 568999999999999887653
No 37
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=94.42 E-value=0.013 Score=42.58 Aligned_cols=38 Identities=32% Similarity=0.699 Sum_probs=30.0
Q ss_pred cccccCCCCCCcceecchhhccCCCCCceeecChHHhHHhHHHHHH
Q 012812 62 VAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRV 107 (456)
Q Consensus 62 ~~~C~~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~ 107 (456)
...| ..|++++.++|..|.. .+|||.+|=+..|+.||.
T Consensus 9 ~~~C-~~C~~~~~~~C~~C~~-------~~YCs~~CQ~~~W~~Hk~ 46 (52)
T 2jw6_A 9 EQSC-VNCGREAMSECTGCHK-------VNYCSTFCQRKDWKDHQH 46 (52)
T ss_dssp --CC-SSSSSSCSEECTTTCS-------SEESSHHHHHHHTTTGGG
T ss_pred CCcC-CCCCCCCcCcCCCCCC-------EeecCHHHHHHHHHHHCH
Confidence 4567 7889888899998852 568999999999997764
No 38
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=89.73 E-value=0.2 Score=51.61 Aligned_cols=39 Identities=28% Similarity=0.583 Sum_probs=29.7
Q ss_pred ccccCCCCC--CcceecchhhccCCCCCceeecChHHhHHhHHHHHHHH
Q 012812 63 AVCSVHPSE--QATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLH 109 (456)
Q Consensus 63 ~~C~~~c~~--~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H 109 (456)
..| .+|.+ .+...|..|.. ..|||.+|.+..|+.||..=
T Consensus 48 ~~C-~~C~~~~~~~~~C~~C~~-------~~yCs~~Cq~~~w~~Hk~eC 88 (429)
T 3qwp_A 48 VVC-DRCLLGKEKLMRCSQCRV-------AKYCSAKCQKKAWPDHKREC 88 (429)
T ss_dssp TBC-TTTCCBCSSCEECTTTSC-------CEESSHHHHHHTHHHHHHHH
T ss_pred CcC-cCCCCcCCCCCcCCCCCC-------cccCChhhhhhhhhhhHHhh
Confidence 457 67876 34588998853 46999999999999988643
No 39
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=89.31 E-value=0.19 Score=51.98 Aligned_cols=39 Identities=18% Similarity=0.517 Sum_probs=29.6
Q ss_pred cccccCCCCCC--cceecchhhccCCCCCceeecChHHhHHhHHHHHHH
Q 012812 62 VAVCSVHPSEQ--ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 108 (456)
Q Consensus 62 ~~~C~~~c~~~--a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~ 108 (456)
...| .+|.+. +...|+.|.. .+|||.+|.+.+|+.||..
T Consensus 49 ~~~C-~~C~~~~~~~~~C~~C~~-------~~yCs~~Cq~~~w~~Hk~e 89 (433)
T 3qww_A 49 GHHC-ECCFARKEGLSKCGRCKQ-------AFYCDVECQKEDWPLHKLE 89 (433)
T ss_dssp TTBC-TTTCCBCSSCEECTTTSC-------CEESSHHHHHHHHHHHTTT
T ss_pred CCcC-CcccccCCCCCCCCCCcc-------eeecChhhhhhhhhHHHHH
Confidence 3456 678764 4588998862 5699999999999888753
No 40
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=87.44 E-value=0.36 Score=50.66 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=29.9
Q ss_pred cccccCCCCCC--cceecchhhccCCCCCceeecChHHhHHhHHHHHHHHH
Q 012812 62 VAVCSVHPSEQ--ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 110 (456)
Q Consensus 62 ~~~C~~~c~~~--a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H~ 110 (456)
...| .+|.+. +.+.|+.|.. .+|||.+|.+..|+.||..=.
T Consensus 49 ~~~C-~~C~~~~~~~~~C~~C~~-------~~yCs~~Cq~~~w~~Hk~eC~ 91 (490)
T 3n71_A 49 NFVC-HTCFKRQEKLHRCGQCKF-------AHYCDRTCQKDAWLNHKNECA 91 (490)
T ss_dssp TTBC-TTTCCBCSCCEECTTTSC-------CEESSHHHHHHHHHHHHHHHH
T ss_pred CCcC-CCCCCCCCCCCCCCCCCC-------cCcCCHHHhhhhhhHHHHHhH
Confidence 3456 677653 4578988853 469999999999998886443
No 41
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.37 E-value=6.6 Score=29.25 Aligned_cols=27 Identities=33% Similarity=0.696 Sum_probs=21.0
Q ss_pred ccCCCCCCcceecchhhccCCCCCceeecChHHhHH
Q 012812 65 CSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSD 100 (456)
Q Consensus 65 C~~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~ 100 (456)
| .-|+.+++-.||.|. ..|||-.|||.
T Consensus 15 C-~vC~~~~kY~CPrC~--------~~yCSl~C~k~ 41 (56)
T 2yqq_A 15 C-VICLEKPKYRCPACR--------VPYCSVVCFRK 41 (56)
T ss_dssp C-TTTCSCCSEECTTTC--------CEESSHHHHHH
T ss_pred c-CcCcCCCeeeCCCCC--------CCeeCHHHHHH
Confidence 5 457778889999774 34999999874
No 42
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=52.57 E-value=7.7 Score=36.34 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.3
Q ss_pred ceeecCCccCCCceEEEEEEE
Q 012812 177 SKTYTPSADDIGHVLKFECVV 197 (456)
Q Consensus 177 ~~~YtPt~~DiG~~lkle~~~ 197 (456)
-..|.|++.|||.+|+++|++
T Consensus 64 k~~YAPeP~DVGrlLqadi~~ 84 (230)
T 4dix_A 64 KSVYAPEPFDVGRVLHADIIY 84 (230)
T ss_dssp SSEECCCGGGBTSEEEEEEEE
T ss_pred cccccCCccccccEEEEEEec
Confidence 467999999999999999986
No 43
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=47.85 E-value=8.4 Score=28.99 Aligned_cols=31 Identities=26% Similarity=0.644 Sum_probs=22.0
Q ss_pred ccccccCCCC----CCcceecchhhccCCCCCceeecChHHhHH
Q 012812 61 KVAVCSVHPS----EQATLQCLGCVKAKIPVAKSYHCSPKCFSD 100 (456)
Q Consensus 61 ~~~~C~~~c~----~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~ 100 (456)
+...| .-|+ +.++-.||.|. ++ |||-.|||.
T Consensus 10 ~~~~C-~vC~~~~~~~akY~CPrC~---~r-----YCSl~C~k~ 44 (59)
T 1x4s_A 10 PAGPC-GFCPAGEVQPARYTCPRCN---AP-----YCSLRCYRT 44 (59)
T ss_dssp CCEEE-CSSCTTCCEEECEECTTTC---CE-----ESSHHHHHH
T ss_pred CCCcC-cCCCCCcCCCccccCcCCC---CC-----ccChHHHHH
Confidence 34456 5566 45789999773 44 999999993
No 44
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=42.57 E-value=9.8 Score=29.44 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=17.0
Q ss_pred ceecchhhccCC---CCCceeecChHHhH
Q 012812 74 TLQCLGCVKAKI---PVAKSYHCSPKCFS 99 (456)
Q Consensus 74 ~l~Cp~C~k~~~---~~~~s~fCsq~CFk 99 (456)
+..||+|.|.-. .....-|||+-|=.
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~ 37 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQL 37 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHH
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHh
Confidence 467888887632 11234599999943
No 45
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=24.16 E-value=27 Score=25.87 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=14.0
Q ss_pred ccCCCCCceeecChHHhHH
Q 012812 82 KAKIPVAKSYHCSPKCFSD 100 (456)
Q Consensus 82 k~~~~~~~s~fCsq~CFk~ 100 (456)
+.-|...+.||||++|-+.
T Consensus 20 ~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 20 SKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp TTSEESSSCEESSHHHHHT
T ss_pred HHhhhcCCeEEehHHHHcc
Confidence 4445566889999999764
No 46
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=23.34 E-value=30 Score=24.31 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=18.9
Q ss_pred ceecchhhccCCCC----CceeecChHHhHHh
Q 012812 74 TLQCLGCVKAKIPV----AKSYHCSPKCFSDA 101 (456)
Q Consensus 74 ~l~Cp~C~k~~~~~----~~s~fCsq~CFk~~ 101 (456)
.+.|-.|-+.|... ...-|||..|=|+.
T Consensus 6 ~~~CE~CG~~g~~~~F~~ksKRFCS~~Carry 37 (43)
T 2w0t_A 6 PAVCEMCGIVGTREAFFSKTKRFCSVSCSRSY 37 (43)
T ss_dssp EEECTTTCCEEETTTSCTTTSSSSSHHHHHHH
T ss_pred eehhhhhcCcchhhhhccCCcceechhhhCcc
Confidence 47788888876641 11238999998763
Done!