BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012813
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 105 bits (261), Expect = 7e-23, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 60/73 (82%)
Query: 73 PEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIR 132
PE F+CP+S ELM+DPVI+++GQT++R IQ+WL AG++TCP++Q+ L H LTPN++++
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 133 EMISQWCRSQGIE 145
+I+ WC S GIE
Sbjct: 66 SLIALWCESNGIE 78
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 72 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLI 131
P+EF+ PL LM DPV L SG DR I R L + T P +Q L+ ++L P +
Sbjct: 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFNRQTLTESMLEPVPEL 84
Query: 132 REMISQWCRSQ 142
+E I W R +
Sbjct: 85 KEQIQAWMREK 95
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 72 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLI 131
P+EF+ PL LM DPV L SG DR I R L + T P +Q+L+ ++L P +
Sbjct: 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESMLEPVPEL 69
Query: 132 REMISQWCRSQ 142
+E I W R +
Sbjct: 70 KEQIQAWMREK 80
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 73 PEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIR 132
P+ +S ELMR+P I SG T+DR I+ L+ P T+ L+ L PN ++
Sbjct: 3 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMK 62
Query: 133 EMISQWCRSQG 143
E+I + G
Sbjct: 63 EVIDAFISENG 73
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 80 LSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWC 139
+S ELMR+P I SG T+DR I+ L+ P T+ L+ L PN ++E+I +
Sbjct: 111 ISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170
Query: 140 RSQG 143
+ G
Sbjct: 171 QENG 174
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 80 LSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWC 139
+S ELMR+P I SG T+DR I+ L+ P T+ L+ L PN ++E+I +
Sbjct: 213 ISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272
Query: 140 RSQG 143
G
Sbjct: 273 SENG 276
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 80 LSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQW 138
+S ELM +P I SG T+DR I+ L+ P T+ L+ L PN ++E+I +
Sbjct: 18 ISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAF 76
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 68 ETVSCPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 126
E P+EF PL +M+DPVIL AS DR I+ L + T P + L +T
Sbjct: 898 EYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDVT 956
Query: 127 PNHLIREMI 135
PN +R+ I
Sbjct: 957 PNEELRQKI 965
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 68 ETVSCPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 126
E P+EF PL +M+DPVIL AS DR I+ L + T P + L +T
Sbjct: 884 EYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDVT 942
Query: 127 PNHLIREMI 135
PN +R+ I
Sbjct: 943 PNEELRQKI 951
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 74 EEFKCPLSKELMRDPVILASGQ-TFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIR 132
+EF P+ LM DPV+L S + T DR I R L + ++T P + L+ + PN ++
Sbjct: 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELK 79
Query: 133 EMISQW 138
E I +W
Sbjct: 80 EKIQRW 85
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 197 FRALFGESH----------DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 246
FR + H +P+L+ + E++ E LQ + L N++ + +
Sbjct: 23 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQ 77
Query: 247 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD 305
V +PL + L +G++E + A AL ++ ++ ++ + + A++P++ L +
Sbjct: 78 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN 137
Query: 306 EGHQSAMKDVASAIFNLC 323
S ++ + NLC
Sbjct: 138 SNKPSLIRTATWTLSNLC 155
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 197 FRALFGESH----------DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 246
FR + H +P+L+ + E++ E LQ + L N++ + +
Sbjct: 23 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQ 77
Query: 247 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD 305
V +PL + L +G++E + A AL ++ ++ ++ + + A++P++ L +
Sbjct: 78 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN 137
Query: 306 EGHQSAMKDVASAIFNLC 323
S ++ + NLC
Sbjct: 138 SNKPSLIRTATWTLSNLC 155
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 197 FRALFGESH----------DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 246
FR + H +P+L+ + E++ E LQ + L N++ + +
Sbjct: 25 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQ 79
Query: 247 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD 305
V +PL + L +G++E + A AL ++ ++ ++ + + A++P++ L +
Sbjct: 80 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN 139
Query: 306 EGHQSAMKDVASAIFNLC 323
S ++ + NLC
Sbjct: 140 SNKPSLIRTATWTLSNLC 157
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 197 FRALFGESH----------DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 246
FR + H +P+L+ + E++ E LQ + L N++ + +
Sbjct: 25 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQ 79
Query: 247 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD 305
V +PL + L +G++E + A AL ++ ++ ++ + + A++P++ L +
Sbjct: 80 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN 139
Query: 306 EGHQSAMKDVASAIFNLC 323
S ++ + NLC
Sbjct: 140 SNKPSLIRTATWTLSNLC 157
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 208 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGT 267
+P+L+ + E++ E LQ + L N++ + + V +PL + L +G+
Sbjct: 132 VPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 186
Query: 268 IETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 323
+E + A AL ++ ++ ++ + + A++P++ L + S ++ + NLC
Sbjct: 187 VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 68 ETVSCPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 126
E P+EF PL + +DPVIL AS DR I+ L + T P + L +T
Sbjct: 898 EYGDVPDEFLDPLXYTIXKDPVILPASKXNIDRSTIKAHL-LSDSTDPFNRXPLKLEDVT 956
Query: 127 PNHLIREMI 135
PN +R+ I
Sbjct: 957 PNEELRQKI 965
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 197 FRALFGESH----------DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 246
FR + H +P+L+ + E++ E LQ + L N++ + +
Sbjct: 24 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQ 78
Query: 247 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD 305
V +PL + L +G++E + A AL ++ ++ ++ + + A++P++ L +
Sbjct: 79 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN 138
Query: 306 EGHQSAMKDVASAIFNLC 323
S ++ + NLC
Sbjct: 139 SNKPSLIRTATWTLSNLC 156
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 197 FRALFGESH----------DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 246
FR + H +P+L+ + E++ E LQ + L N++ + +
Sbjct: 24 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM-----LQLEAAWALTNIASGTSAQ 78
Query: 247 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD 305
V +PL + L +G++E + A AL ++ ++ ++ + + A++P++ L +
Sbjct: 79 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN 138
Query: 306 EGHQSAMKDVASAIFNLC 323
S ++ + NLC
Sbjct: 139 SNKPSLIRTATWTLSNLC 156
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 18/179 (10%)
Query: 277 ALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDG 336
A TL A + +++I ++ L+DL G+QS + V + NLC +E +
Sbjct: 404 AYLTLDA-ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMI 462
Query: 337 GVSVILKKIMDGVH----VDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRN 392
++ K+ + H VD + + +L+ G++ L + ++ +
Sbjct: 463 ELAKFAKQHIPEEHELDDVDFINKRITVLANE-----------GITTALCALAKTESHNS 511
Query: 393 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 451
+E +L+ +C + K + +E + ++A +GT + KR AT L R+ T+N
Sbjct: 512 QELIARVLNAVCGLKELRGKVV--QEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCP 114
E C + E +++PVI+ G F + I RW + R P
Sbjct: 15 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFP 54
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 226 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 285
P LQ + L N++ + V +P+ + L S + + R A AL ++ D
Sbjct: 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAG-D 190
Query: 286 SNK--EVIGKSGALKPLIDLLDEGHQ-SAMKDVASAIFNLC 323
S K +++ +GAL PL+ L+E + S +++ + N C
Sbjct: 191 SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET + L LS I KSG +
Sbjct: 177 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGI 236
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDEL--- 354
L+++L S + + + NL + E AVR G + +++ +V L
Sbjct: 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 296
Query: 355 ---LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR 391
L ILA + + + I GG ++ I+R T ++
Sbjct: 297 TDCLQILAYGNQESKLI--ILASGGPQALVNIMRTYTYEK 334
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 225 NPNLQEDVITTLLNLSIHDNNKKL-VAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 283
N ++Q V L NL DN+ KL VAE V LL ++ +ET+ L+ LS+
Sbjct: 65 NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124
Query: 284 LDSNKEVI 291
D K ++
Sbjct: 125 NDKLKNLM 132
>pdb|2YU4|A Chain A, Solution Structure Of The Sp-Ring Domain In Non-Smc
Element 2 Homolog (Mms21, S. Cerevisiae)
Length = 94
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 76 FKCPLSKELMRDPVI-LASGQTFDRPYIQRWLKAGNR-----TCPRTQQVLSHTILTPNH 129
F CP++KE M+ PV G T++ I R +++ + CP Q SHT + +
Sbjct: 8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCP--QIGCSHTDIRKSD 65
Query: 130 LIRE 133
LI++
Sbjct: 66 LIQD 69
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 226 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 285
P LQ + L N++ + V +P+ + L S + + R A AL ++ D
Sbjct: 94 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAG-D 152
Query: 286 SNK--EVIGKSGALKPLIDLLDEGHQ-SAMKDVASAIFNLC 323
S K +++ +GAL PL+ L+E + S +++ + N C
Sbjct: 153 SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 193
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLI-RE 133
+++CP+ +R+ V G F + I + ++ CP ++L L P++ RE
Sbjct: 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKRE 77
Query: 134 MIS 136
++S
Sbjct: 78 ILS 80
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 9/160 (5%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 41 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 100
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDEL--- 354
L+ +L S + + + NL + E AVR G + +++ +V L
Sbjct: 101 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 160
Query: 355 ---LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR 391
L ILA + + + I GG ++ I+R T ++
Sbjct: 161 TDCLQILAYGNQESKLI--ILASGGPQALVNIMRTYTYEK 198
>pdb|3O3R|A Chain A, Crystal Structure Of Akr1b14 In Complex With Nadp
pdb|3O3R|B Chain B, Crystal Structure Of Akr1b14 In Complex With Nadp
Length = 316
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 82 KELMRDPVILASG-QTFDRPYIQRWL-KAGNRTCPRTQQVLSHTILTPNHLIREMISQWC 139
+EL+ ++ A G F+ I+R L K G + P T QV H LT LI Q+C
Sbjct: 146 EELVDQGLVKALGVSNFNHFQIERLLNKPGLKHKPVTNQVECHPYLTQEKLI-----QYC 200
Query: 140 RSQGI 144
S+GI
Sbjct: 201 HSKGI 205
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 9/160 (5%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 42 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 101
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDEL--- 354
L+ +L S + + + NL + E AVR G + +++ +V L
Sbjct: 102 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 161
Query: 355 ---LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR 391
L ILA + + + I GG ++ I+R T ++
Sbjct: 162 TDCLQILAYGNQESKLI--ILASGGPQALVNIMRTYTYEK 199
>pdb|3QKZ|A Chain A, Crystal Structure Of Mutant His269arg Akr1b14
pdb|3QKZ|B Chain B, Crystal Structure Of Mutant His269arg Akr1b14
Length = 316
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 82 KELMRDPVILASG-QTFDRPYIQRWL-KAGNRTCPRTQQVLSHTILTPNHLIREMISQWC 139
+EL+ ++ A G F+ I+R L K G + P T QV H LT LI Q+C
Sbjct: 146 EELVDQGLVKALGVSNFNHFQIERLLNKPGLKHKPVTNQVECHPYLTQEKLI-----QYC 200
Query: 140 RSQGI 144
S+GI
Sbjct: 201 HSKGI 205
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLI-RE 133
+++CP+ +R+ V G F + I + ++ CP ++L L P++ RE
Sbjct: 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKRE 77
Query: 134 MIS 136
++S
Sbjct: 78 ILS 80
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 29 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 88
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 337
L+ +L S + + + NL + E AVR G
Sbjct: 89 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 128
>pdb|1FRB|A Chain A, Fr-1 ProteinNADPHZOPOLRESTAT COMPLEX
Length = 315
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 82 KELMRDPVILASG-QTFDRPYIQRWL-KAGNRTCPRTQQVLSHTILTPNHLIREMISQWC 139
+EL+ ++ A G F+ I+R L K G + P T QV H LT LI Q+C
Sbjct: 145 EELVDQGLVKALGVSNFNHFQIERLLNKPGLKHKPVTNQVECHPYLTQEKLI-----QYC 199
Query: 140 RSQGIEL 146
S+GI +
Sbjct: 200 HSKGISV 206
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 33 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 92
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 337
L+ +L S + + + NL + E AVR G
Sbjct: 93 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 132
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 9/160 (5%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 45 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 104
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDEL--- 354
L+ +L S + + + NL + E AVR G + +++ +V L
Sbjct: 105 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 164
Query: 355 ---LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR 391
L ILA + + + I GG ++ I+R T ++
Sbjct: 165 TDCLQILAYGNQESKLI--ILASGGPQALVNIMRTYTYEK 202
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 31 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 90
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 337
L+ +L S + + + NL + E AVR G
Sbjct: 91 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 130
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 29 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 88
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 337
L+ +L S + + + NL + E AVR G
Sbjct: 89 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 128
>pdb|2Y1I|A Chain A, Crystal Structure Of A S-Diastereomer Analogue Of The
Spore Photoproduct In Complex With Fragment Dna
Polymerase I From Bacillus Stearothermophilus
pdb|2Y1J|A Chain A, Crystal Structure Of A R-Diastereomer Analogue Of The
Spore Photoproduct In Complex With Fragment Dna
Polymerase I From Bacillus Stearothermophilus
Length = 580
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 133 EMISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTK 192
E I ++ S P +Y+ E + EA + +++ L LPD T +R +
Sbjct: 438 EFIERYFES----FPGVKRYM-ENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAE 492
Query: 193 RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET 252
RM + G + D I K +N L+E+ + L L +HD +L+ E
Sbjct: 493 RMAMNTPIQGSAADII---------KKAMIDLNARLKEERLQARLLLQVHD---ELILEA 540
Query: 253 P 253
P
Sbjct: 541 P 541
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 46 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 105
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 337
L+ +L S + + + NL + E AVR G
Sbjct: 106 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 145
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 46 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 105
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 337
L+ +L S + + + NL + E AVR G
Sbjct: 106 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 145
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 42 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 101
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 337
L+ +L S + + + NL + E AVR G
Sbjct: 102 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 141
>pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair
In Complex With Fragment Dna Polymerase I From Bacillus
Stearothermophilus
Length = 580
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 133 EMISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTK 192
E I ++ S P +Y+ E + EA + +++ L LPD T +R +
Sbjct: 438 EFIERYFES----FPGVKRYM-ENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAE 492
Query: 193 RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET 252
RM + G + D I K +N L+E+ + L L +HD +L+ E
Sbjct: 493 RMAMNTPIQGSAADII---------KKAMIDLNARLKEERLQARLLLQVHD---ELILEA 540
Query: 253 P 253
P
Sbjct: 541 P 541
>pdb|2XY7|A Chain A, Crystal Structure Of A Salicylic Aldehyde Base In The
Pre-Insertion Site Of Fragment Dna Polymerase I From
Bacillus Stearothermophilus
Length = 580
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 133 EMISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTK 192
E I ++ S P +Y+ E + EA + +++ L LPD T +R +
Sbjct: 438 EFIERYFES----FPGVKRYM-ENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAE 492
Query: 193 RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET 252
RM + G + D I K +N L+E+ + L L +HD +L+ E
Sbjct: 493 RMAMNTPIQGSAADII---------KKAMIDLNARLKEERLQARLLLQVHD---ELILEA 540
Query: 253 P 253
P
Sbjct: 541 P 541
>pdb|2XY6|A Chain A, Crystal Structure Of A Salicylic Aldehyde Basepair In
Complex With Fragment Dna Polymerase I From Bacillus
Stearothermophilus
Length = 581
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 133 EMISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTK 192
E I ++ S P +Y+ E + EA + +++ L LPD T +R +
Sbjct: 439 EFIERYFES----FPGVKRYM-ENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAE 493
Query: 193 RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET 252
RM + G + D I K +N L+E+ + L L +HD +L+ E
Sbjct: 494 RMAMNTPIQGSAADII---------KKAMIDLNARLKEERLQARLLLQVHD---ELILEA 541
Query: 253 P 253
P
Sbjct: 542 P 542
>pdb|2XY5|A Chain A, Crystal Structure Of An Artificial Salen-Copper Basepair
In Complex With Fragment Dna Polymerase I From Bacillus
Stearothermophilus
Length = 581
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 133 EMISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTK 192
E I ++ S P +Y+ E + EA + +++ L LPD T +R +
Sbjct: 439 EFIERYFES----FPGVKRYM-ENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAE 493
Query: 193 RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET 252
RM + G + D I K +N L+E+ + L L +HD +L+ E
Sbjct: 494 RMAMNTPIQGSAADII---------KKAMIDLNARLKEERLQARLLLQVHD---ELILEA 541
Query: 253 P 253
P
Sbjct: 542 P 542
>pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
Length = 579
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 19/156 (12%)
Query: 100 PYIQRWLKAGNRTCPR--TQQVLSHTILTPNHLIREMISQWCRSQGIELPNSVQYINEEG 157
P ++R KA N P + L+ + E I ++ S P +Y+ E
Sbjct: 402 PNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEAAEFIERYFES----FPGVKRYM-ENI 456
Query: 158 ITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSE 217
+ EA + +++ L LPD T +R +RM + G + D I
Sbjct: 457 VQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII--------- 507
Query: 218 SKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 253
K +N L+E+ + L L +HD +L+ E P
Sbjct: 508 KKAMIDLNARLKEERLQAHLLLQVHD---ELILEAP 540
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 48 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 107
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 337
L+ +L S + + + NL + E AVR G
Sbjct: 108 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 147
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 44 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 103
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 337
L+ +L S + + + NL + E AVR G
Sbjct: 104 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 143
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 239 LSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGAL 297
LS + ++ + +P ++ ++ ++ + +ET A L LS I KSG +
Sbjct: 47 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 106
Query: 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 337
L+ +L S + + + NL + E AVR G
Sbjct: 107 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 146
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 74 EEFKCPLSKELMRDPVILASGQTFDRPYI-----QRWLKAGNRTCP 114
EE CP+ EL+ P+ L G +F + + + L G +CP
Sbjct: 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCP 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,077,526
Number of Sequences: 62578
Number of extensions: 453295
Number of successful extensions: 1375
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1313
Number of HSP's gapped (non-prelim): 106
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)