Query 012813
Match_columns 456
No_of_seqs 371 out of 2530
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.3E-27 2.8E-32 268.6 29.0 278 163-448 12-312 (2102)
2 KOG0166 Karyopherin (importin) 100.0 1.4E-26 3E-31 229.9 23.2 279 163-449 108-394 (514)
3 PLN03200 cellulose synthase-in 99.9 5E-26 1.1E-30 255.9 28.7 284 159-452 441-768 (2102)
4 KOG4224 Armadillo repeat prote 99.9 6.1E-27 1.3E-31 218.3 17.2 282 157-448 119-405 (550)
5 KOG4224 Armadillo repeat prote 99.9 2E-25 4.4E-30 208.1 18.6 287 155-452 158-450 (550)
6 COG5064 SRP1 Karyopherin (impo 99.9 5.7E-24 1.2E-28 197.0 17.7 278 162-449 112-399 (526)
7 KOG0166 Karyopherin (importin) 99.9 2.2E-23 4.7E-28 207.2 20.9 285 160-451 148-439 (514)
8 PF04564 U-box: U-box domain; 99.9 2.5E-23 5.5E-28 156.7 5.0 72 72-143 1-72 (73)
9 COG5064 SRP1 Karyopherin (impo 99.9 2.3E-21 5.1E-26 179.7 15.7 279 160-448 153-443 (526)
10 PF05804 KAP: Kinesin-associat 99.8 1.8E-19 3.9E-24 188.7 23.1 285 162-453 121-484 (708)
11 PF05804 KAP: Kinesin-associat 99.8 2.6E-18 5.6E-23 180.0 25.0 255 175-447 261-519 (708)
12 KOG2122 Beta-catenin-binding p 99.7 2.8E-17 6.2E-22 174.8 15.3 268 179-450 313-603 (2195)
13 COG5113 UFD2 Ubiquitin fusion 99.7 2.5E-17 5.5E-22 162.9 11.7 137 6-143 758-922 (929)
14 KOG4199 Uncharacterized conser 99.7 1.9E-15 4.1E-20 140.5 21.0 280 164-452 145-448 (461)
15 KOG4199 Uncharacterized conser 99.7 3E-15 6.5E-20 139.2 21.7 263 177-450 121-405 (461)
16 KOG1048 Neural adherens juncti 99.7 3.9E-16 8.4E-21 160.3 16.4 279 164-451 233-598 (717)
17 smart00504 Ubox Modified RING 99.7 2.5E-17 5.3E-22 121.1 4.9 63 75-138 1-63 (63)
18 KOG2042 Ubiquitin fusion degra 99.7 8.5E-17 1.8E-21 169.3 9.9 118 24-142 803-937 (943)
19 PF04826 Arm_2: Armadillo-like 99.5 5E-13 1.1E-17 125.1 19.6 224 205-438 11-252 (254)
20 KOG1048 Neural adherens juncti 99.5 1.7E-13 3.7E-18 141.1 17.2 285 161-455 272-691 (717)
21 PF04826 Arm_2: Armadillo-like 99.5 1.1E-12 2.3E-17 122.9 18.1 190 162-364 10-206 (254)
22 KOG2122 Beta-catenin-binding p 99.4 5.4E-12 1.2E-16 135.4 13.8 226 178-410 366-606 (2195)
23 KOG1222 Kinesin associated pro 99.3 2.3E-11 4.9E-16 118.4 14.8 219 228-453 279-498 (791)
24 PF10508 Proteasom_PSMB: Prote 99.3 8.1E-10 1.7E-14 114.6 25.9 271 169-451 43-322 (503)
25 PF10508 Proteasom_PSMB: Prote 99.3 1.7E-09 3.7E-14 112.2 25.2 274 164-448 77-366 (503)
26 cd00020 ARM Armadillo/beta-cat 99.2 1.2E-10 2.6E-15 96.5 12.2 115 290-405 2-120 (120)
27 KOG1222 Kinesin associated pro 99.2 7.9E-10 1.7E-14 107.8 18.4 266 164-447 260-533 (791)
28 cd00020 ARM Armadillo/beta-cat 99.2 4E-10 8.8E-15 93.4 14.2 115 331-447 2-119 (120)
29 PF03224 V-ATPase_H_N: V-ATPas 99.1 2.2E-09 4.8E-14 104.9 16.9 232 206-442 55-308 (312)
30 KOG4500 Rho/Rac GTPase guanine 99.1 1.9E-08 4.2E-13 97.2 21.1 285 163-451 86-434 (604)
31 KOG4642 Chaperone-dependent E3 99.1 1.4E-10 3E-15 103.9 5.2 78 68-145 204-281 (284)
32 PLN03208 E3 ubiquitin-protein 99.0 1.3E-10 2.8E-15 101.8 3.2 63 68-130 11-88 (193)
33 PF15227 zf-C3HC4_4: zinc fing 99.0 3.7E-10 8.1E-15 74.8 2.5 39 78-116 1-42 (42)
34 TIGR00599 rad18 DNA repair pro 98.9 1.4E-09 2.9E-14 107.0 6.7 70 71-141 22-91 (397)
35 PRK09687 putative lyase; Provi 98.9 1.1E-07 2.4E-12 91.0 19.6 117 296-445 160-279 (280)
36 KOG4500 Rho/Rac GTPase guanine 98.9 8.4E-08 1.8E-12 92.8 18.3 279 167-446 226-517 (604)
37 KOG0946 ER-Golgi vesicle-tethe 98.8 1.2E-06 2.7E-11 90.5 22.6 275 163-446 21-344 (970)
38 cd00256 VATPase_H VATPase_H, r 98.8 8.3E-07 1.8E-11 88.8 20.4 277 164-447 53-424 (429)
39 PF03224 V-ATPase_H_N: V-ATPas 98.7 2.2E-07 4.7E-12 90.9 12.9 220 168-394 62-303 (312)
40 PRK09687 putative lyase; Provi 98.7 5E-07 1.1E-11 86.5 15.1 88 337-447 160-249 (280)
41 PF11789 zf-Nse: Zinc-finger o 98.7 4.9E-09 1.1E-13 74.1 0.8 43 75-117 11-55 (57)
42 KOG2160 Armadillo/beta-catenin 98.7 1.5E-06 3.3E-11 83.2 17.5 177 267-444 96-278 (342)
43 KOG0168 Putative ubiquitin fus 98.6 2.7E-06 5.8E-11 88.7 18.8 256 163-430 166-437 (1051)
44 PF13923 zf-C3HC4_2: Zinc fing 98.6 4E-08 8.6E-13 64.2 2.5 38 78-116 1-39 (39)
45 KOG2160 Armadillo/beta-catenin 98.5 2.7E-06 5.9E-11 81.4 15.5 183 223-407 94-284 (342)
46 PF13445 zf-RING_UBOX: RING-ty 98.5 3.4E-08 7.3E-13 65.3 1.8 36 78-114 1-43 (43)
47 PRK13800 putative oxidoreducta 98.5 6.9E-06 1.5E-10 91.4 21.2 224 163-447 620-866 (897)
48 cd00256 VATPase_H VATPase_H, r 98.5 2.9E-05 6.4E-10 77.8 22.2 236 206-446 53-306 (429)
49 PRK13800 putative oxidoreducta 98.5 1.6E-05 3.5E-10 88.5 22.3 225 163-444 651-895 (897)
50 KOG0287 Postreplication repair 98.5 7.5E-08 1.6E-12 89.8 3.1 65 75-140 23-87 (442)
51 PHA02929 N1R/p28-like protein; 98.4 2.5E-07 5.5E-12 85.0 4.2 51 70-121 169-227 (238)
52 PF13920 zf-C3HC4_3: Zinc fing 98.4 2.4E-07 5.3E-12 64.1 2.5 47 74-121 1-48 (50)
53 KOG0168 Putative ubiquitin fus 98.4 2E-05 4.2E-10 82.5 17.1 198 225-428 181-389 (1051)
54 KOG4646 Uncharacterized conser 98.3 2.8E-06 6.1E-11 69.8 8.3 128 207-340 17-145 (173)
55 KOG0289 mRNA splicing factor [ 98.3 1.3E-06 2.9E-11 84.4 6.6 51 76-127 1-52 (506)
56 KOG0823 Predicted E3 ubiquitin 98.3 3.7E-07 8E-12 81.7 2.5 57 74-130 46-104 (230)
57 PF14835 zf-RING_6: zf-RING of 98.3 2.6E-07 5.6E-12 65.4 0.9 58 75-135 7-65 (65)
58 PF00097 zf-C3HC4: Zinc finger 98.2 6.8E-07 1.5E-11 59.1 2.6 39 78-116 1-41 (41)
59 KOG0317 Predicted E3 ubiquitin 98.2 9.3E-07 2E-11 81.5 3.7 54 72-126 235-289 (293)
60 KOG1293 Proteins containing ar 98.2 0.00054 1.2E-08 70.3 23.2 149 225-374 390-545 (678)
61 COG5432 RAD18 RING-finger-cont 98.2 9.5E-07 2.1E-11 80.8 3.1 64 76-140 26-89 (391)
62 PF05536 Neurochondrin: Neuroc 98.2 6.9E-05 1.5E-09 78.3 17.4 190 255-446 6-211 (543)
63 KOG2171 Karyopherin (importin) 98.2 0.00031 6.7E-09 76.3 22.3 278 163-451 154-507 (1075)
64 PF01602 Adaptin_N: Adaptin N 98.2 5.3E-05 1.1E-09 79.6 16.5 277 126-448 53-333 (526)
65 COG5222 Uncharacterized conser 98.2 2.7E-06 5.8E-11 78.2 5.5 116 24-142 225-343 (427)
66 KOG2759 Vacuolar H+-ATPase V1 98.2 8E-05 1.7E-09 72.6 15.6 278 165-449 66-439 (442)
67 KOG0946 ER-Golgi vesicle-tethe 98.1 9.9E-05 2.2E-09 76.8 16.6 212 207-428 23-263 (970)
68 KOG2973 Uncharacterized conser 98.1 0.00042 9.1E-09 65.1 19.0 269 166-448 5-315 (353)
69 KOG2177 Predicted E3 ubiquitin 98.1 2.6E-06 5.7E-11 83.3 4.6 68 72-142 10-77 (386)
70 KOG4646 Uncharacterized conser 98.1 2.8E-05 6.1E-10 64.0 9.5 134 293-428 14-150 (173)
71 PF13639 zf-RING_2: Ring finge 98.1 1.7E-06 3.7E-11 58.1 1.6 40 77-117 2-44 (44)
72 PF01602 Adaptin_N: Adaptin N 98.0 0.00014 3.1E-09 76.4 16.5 249 166-448 116-369 (526)
73 PF05536 Neurochondrin: Neuroc 98.0 0.00041 8.9E-09 72.6 18.4 234 208-449 7-262 (543)
74 KOG2973 Uncharacterized conser 98.0 0.00012 2.7E-09 68.6 12.6 190 210-410 7-209 (353)
75 KOG2171 Karyopherin (importin) 98.0 0.00073 1.6E-08 73.5 20.2 264 177-447 263-548 (1075)
76 KOG1293 Proteins containing ar 98.0 8.1E-05 1.7E-09 76.2 12.4 139 307-446 389-531 (678)
77 cd00162 RING RING-finger (Real 98.0 7.7E-06 1.7E-10 54.8 3.4 43 77-119 1-44 (45)
78 PF00514 Arm: Armadillo/beta-c 97.9 2.2E-05 4.7E-10 51.8 5.2 41 364-405 1-41 (41)
79 PHA02926 zinc finger-like prot 97.9 6.2E-06 1.3E-10 73.3 2.9 54 68-121 163-230 (242)
80 PF00514 Arm: Armadillo/beta-c 97.9 5.8E-06 1.3E-10 54.6 2.0 40 285-324 2-41 (41)
81 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0014 3.1E-08 65.2 18.6 266 172-448 34-364 (371)
82 TIGR00570 cdk7 CDK-activating 97.8 3.3E-05 7.2E-10 73.2 5.8 62 74-135 2-72 (309)
83 KOG0320 Predicted E3 ubiquitin 97.8 1.1E-05 2.5E-10 69.0 2.4 51 75-126 131-183 (187)
84 TIGR02270 conserved hypothetic 97.8 0.0033 7.2E-08 63.4 20.3 57 377-450 242-298 (410)
85 smart00184 RING Ring finger. E 97.8 1.9E-05 4E-10 50.9 2.9 39 78-116 1-39 (39)
86 PTZ00429 beta-adaptin; Provisi 97.8 0.0052 1.1E-07 66.5 22.3 250 164-447 32-284 (746)
87 KOG3678 SARM protein (with ste 97.7 0.0012 2.6E-08 65.2 15.3 263 162-448 178-452 (832)
88 PTZ00429 beta-adaptin; Provisi 97.7 0.0081 1.8E-07 65.0 22.8 253 165-447 69-325 (746)
89 KOG0311 Predicted E3 ubiquitin 97.6 1.5E-05 3.2E-10 75.5 0.8 67 72-138 40-108 (381)
90 PF12348 CLASP_N: CLASP N term 97.6 0.0017 3.8E-08 60.3 13.8 182 264-451 17-209 (228)
91 KOG2023 Nuclear transport rece 97.6 0.0018 4E-08 66.6 14.4 269 164-449 128-464 (885)
92 PF14664 RICTOR_N: Rapamycin-i 97.6 0.0074 1.6E-07 60.2 18.6 224 225-452 38-273 (371)
93 KOG2734 Uncharacterized conser 97.5 0.042 9E-07 54.4 22.0 245 161-407 122-402 (536)
94 KOG2759 Vacuolar H+-ATPase V1 97.5 0.017 3.7E-07 56.8 19.3 226 207-438 66-311 (442)
95 PF13646 HEAT_2: HEAT repeats; 97.5 0.00044 9.5E-09 53.7 7.1 84 256-359 1-88 (88)
96 KOG1789 Endocytosis protein RM 97.5 0.021 4.6E-07 61.8 21.0 252 166-430 1773-2141(2235)
97 COG5574 PEX10 RING-finger-cont 97.4 7.2E-05 1.6E-09 68.3 2.2 52 72-123 211-264 (271)
98 KOG2734 Uncharacterized conser 97.4 0.026 5.7E-07 55.7 19.0 229 181-420 102-363 (536)
99 PF12678 zf-rbx1: RING-H2 zinc 97.4 0.00014 3E-09 54.6 2.7 47 69-117 14-73 (73)
100 PF14634 zf-RING_5: zinc-RING 97.4 0.00015 3.2E-09 48.6 2.5 40 78-118 2-44 (44)
101 KOG4159 Predicted E3 ubiquitin 97.3 0.00029 6.4E-09 69.8 4.5 72 69-141 78-154 (398)
102 PF13646 HEAT_2: HEAT repeats; 97.2 0.00077 1.7E-08 52.3 6.0 87 208-320 1-88 (88)
103 KOG0212 Uncharacterized conser 97.2 0.02 4.3E-07 58.2 16.9 266 177-454 138-412 (675)
104 KOG0978 E3 ubiquitin ligase in 97.2 0.00012 2.7E-09 76.4 1.7 53 75-127 643-695 (698)
105 KOG3678 SARM protein (with ste 97.2 0.0039 8.5E-08 61.7 11.5 169 254-427 180-356 (832)
106 KOG1242 Protein containing ada 97.2 0.0082 1.8E-07 61.6 14.2 222 205-444 212-440 (569)
107 KOG2660 Locus-specific chromos 97.2 0.00022 4.9E-09 67.3 2.8 66 71-137 11-81 (331)
108 smart00185 ARM Armadillo/beta- 97.2 0.00033 7.2E-09 45.7 2.9 40 285-324 2-41 (41)
109 COG5369 Uncharacterized conser 97.2 0.003 6.4E-08 63.6 10.3 196 231-428 408-617 (743)
110 KOG0297 TNF receptor-associate 97.1 0.00033 7.1E-09 70.3 3.5 66 72-138 18-85 (391)
111 PF10165 Ric8: Guanine nucleot 97.1 0.021 4.7E-07 58.5 16.7 264 184-450 2-339 (446)
112 PF10165 Ric8: Guanine nucleot 97.1 0.029 6.2E-07 57.6 16.9 231 177-410 46-342 (446)
113 smart00185 ARM Armadillo/beta- 97.1 0.0014 3.1E-08 42.6 5.0 40 365-405 2-41 (41)
114 KOG0212 Uncharacterized conser 97.0 0.04 8.7E-07 56.1 16.9 231 206-449 208-445 (675)
115 TIGR02270 conserved hypothetic 97.0 0.08 1.7E-06 53.5 19.4 117 207-361 87-205 (410)
116 KOG4413 26S proteasome regulat 96.9 0.07 1.5E-06 50.9 16.6 236 202-448 125-377 (524)
117 PF11841 DUF3361: Domain of un 96.9 0.023 4.9E-07 49.0 12.4 120 289-409 5-135 (160)
118 KOG1789 Endocytosis protein RM 96.9 0.019 4.2E-07 62.1 13.6 137 270-406 1741-1884(2235)
119 KOG2164 Predicted E3 ubiquitin 96.8 0.00082 1.8E-08 67.2 3.3 72 72-143 183-262 (513)
120 COG1413 FOG: HEAT repeat [Ener 96.8 0.065 1.4E-06 52.8 16.7 188 206-444 43-238 (335)
121 PF13513 HEAT_EZ: HEAT-like re 96.8 0.0012 2.5E-08 46.5 3.1 55 268-322 1-55 (55)
122 PF04063 DUF383: Domain of unk 96.8 0.022 4.9E-07 51.1 11.7 108 306-415 6-141 (192)
123 KOG4413 26S proteasome regulat 96.8 0.23 5E-06 47.5 18.6 277 163-447 127-438 (524)
124 PF09759 Atx10homo_assoc: Spin 96.7 0.012 2.6E-07 46.8 8.0 66 350-416 2-69 (102)
125 PF12348 CLASP_N: CLASP N term 96.6 0.0077 1.7E-07 55.9 8.1 188 223-415 18-216 (228)
126 COG5240 SEC21 Vesicle coat com 96.6 0.11 2.5E-06 53.0 16.3 214 226-448 278-555 (898)
127 COG1413 FOG: HEAT repeat [Ener 96.6 0.27 5.8E-06 48.4 19.3 182 164-403 43-240 (335)
128 PF04641 Rtf2: Rtf2 RING-finge 96.6 0.0016 3.5E-08 61.8 3.2 53 72-126 110-166 (260)
129 PF13513 HEAT_EZ: HEAT-like re 96.5 0.0071 1.5E-07 42.4 5.4 55 390-446 1-55 (55)
130 KOG0802 E3 ubiquitin ligase [P 96.5 0.00099 2.1E-08 70.1 1.3 49 71-120 287-340 (543)
131 KOG2023 Nuclear transport rece 96.4 0.047 1E-06 56.6 12.5 172 205-382 127-306 (885)
132 KOG1059 Vesicle coat complex A 96.4 0.85 1.8E-05 48.1 21.3 238 163-429 180-423 (877)
133 COG5243 HRD1 HRD ubiquitin lig 96.3 0.0071 1.5E-07 57.9 5.8 48 72-120 284-344 (491)
134 KOG1241 Karyopherin (importin) 96.3 0.042 9.2E-07 57.8 11.8 206 206-415 319-540 (859)
135 KOG3039 Uncharacterized conser 96.3 0.0034 7.4E-08 56.7 3.1 53 74-127 220-276 (303)
136 KOG1248 Uncharacterized conser 96.2 0.19 4E-06 55.6 16.6 218 223-448 665-898 (1176)
137 KOG0824 Predicted E3 ubiquitin 96.2 0.0022 4.8E-08 59.8 1.8 47 77-123 9-55 (324)
138 KOG3036 Protein involved in ce 96.2 0.46 1E-05 43.7 16.1 176 226-405 93-291 (293)
139 PF11841 DUF3361: Domain of un 96.0 0.12 2.6E-06 44.6 11.0 117 330-447 5-130 (160)
140 PF04063 DUF383: Domain of unk 95.9 0.037 8.1E-07 49.7 8.0 101 205-305 51-157 (192)
141 PF12861 zf-Apc11: Anaphase-pr 95.9 0.0087 1.9E-07 45.5 3.2 47 75-121 32-82 (85)
142 KOG2999 Regulator of Rac1, req 95.9 0.18 4E-06 51.3 13.3 153 256-409 85-246 (713)
143 KOG4628 Predicted E3 ubiquitin 95.9 0.005 1.1E-07 59.7 2.3 46 76-121 230-278 (348)
144 KOG1242 Protein containing ada 95.8 0.6 1.3E-05 48.4 17.3 264 165-451 97-404 (569)
145 KOG2979 Protein involved in DN 95.8 0.009 2E-07 54.7 3.8 63 75-137 176-244 (262)
146 KOG1813 Predicted E3 ubiquitin 95.7 0.0049 1.1E-07 57.4 1.7 46 76-122 242-287 (313)
147 PF14668 RICTOR_V: Rapamycin-i 95.6 0.073 1.6E-06 39.6 7.4 64 312-375 4-70 (73)
148 KOG2817 Predicted E3 ubiquitin 95.6 0.0084 1.8E-07 58.3 2.7 45 76-120 335-384 (394)
149 KOG3039 Uncharacterized conser 95.5 0.0075 1.6E-07 54.5 2.1 37 72-108 40-76 (303)
150 KOG1241 Karyopherin (importin) 95.5 0.43 9.3E-06 50.5 14.9 260 178-451 145-438 (859)
151 KOG4367 Predicted Zn-finger pr 95.5 0.0046 1E-07 60.2 0.6 35 74-108 3-37 (699)
152 PF04078 Rcd1: Cell differenti 95.4 0.38 8.2E-06 44.9 12.9 139 308-446 8-166 (262)
153 KOG2611 Neurochondrin/leucine- 95.4 0.67 1.5E-05 46.6 15.2 144 259-404 16-181 (698)
154 PF05004 IFRD: Interferon-rela 95.4 1.9 4.2E-05 41.9 18.5 184 259-447 48-256 (309)
155 COG5369 Uncharacterized conser 95.4 0.08 1.7E-06 53.7 8.7 134 313-447 407-544 (743)
156 KOG0826 Predicted E3 ubiquitin 95.3 0.0078 1.7E-07 56.9 1.6 52 72-124 297-349 (357)
157 PF12755 Vac14_Fab1_bd: Vacuol 95.3 0.22 4.8E-06 39.5 9.6 92 352-447 4-96 (97)
158 KOG1517 Guanine nucleotide bin 95.3 0.89 1.9E-05 50.0 16.6 215 230-446 485-730 (1387)
159 KOG2259 Uncharacterized conser 95.2 0.07 1.5E-06 55.4 8.0 95 223-324 209-310 (823)
160 KOG2259 Uncharacterized conser 95.2 0.48 1E-05 49.5 13.9 209 169-402 203-472 (823)
161 KOG1002 Nucleotide excision re 95.2 0.011 2.3E-07 59.3 2.1 53 74-126 535-591 (791)
162 KOG1824 TATA-binding protein-i 95.2 0.37 8E-06 52.2 13.3 175 168-355 572-753 (1233)
163 COG5215 KAP95 Karyopherin (imp 95.1 1.5 3.3E-05 45.2 16.8 270 165-451 134-440 (858)
164 KOG3036 Protein involved in ce 95.0 0.33 7.1E-06 44.7 10.9 152 180-334 96-257 (293)
165 KOG1077 Vesicle coat complex A 95.0 1 2.3E-05 47.4 15.6 92 337-438 330-423 (938)
166 PF08045 CDC14: Cell division 94.8 0.26 5.6E-06 46.2 10.1 95 351-446 108-205 (257)
167 COG5231 VMA13 Vacuolar H+-ATPa 94.8 0.83 1.8E-05 43.7 13.2 221 226-448 163-428 (432)
168 PF13764 E3_UbLigase_R4: E3 ub 94.7 8.2 0.00018 42.5 22.3 277 157-450 77-408 (802)
169 COG5109 Uncharacterized conser 94.7 0.083 1.8E-06 49.7 6.3 44 76-119 337-385 (396)
170 KOG1077 Vesicle coat complex A 94.7 1.7 3.8E-05 45.8 16.2 259 168-452 115-402 (938)
171 PF04078 Rcd1: Cell differenti 94.6 2.4 5.2E-05 39.7 15.8 219 225-447 8-261 (262)
172 KOG3113 Uncharacterized conser 94.6 0.021 4.6E-07 51.9 2.3 51 73-126 109-163 (293)
173 PF12755 Vac14_Fab1_bd: Vacuol 94.6 0.097 2.1E-06 41.5 5.8 67 294-362 26-95 (97)
174 KOG4692 Predicted E3 ubiquitin 94.5 0.055 1.2E-06 51.6 4.8 48 73-121 420-467 (489)
175 COG5540 RING-finger-containing 94.4 0.029 6.4E-07 52.4 2.6 47 76-122 324-373 (374)
176 PF12717 Cnd1: non-SMC mitotic 94.3 1.6 3.5E-05 38.7 13.8 93 225-325 1-93 (178)
177 COG5231 VMA13 Vacuolar H+-ATPa 94.3 0.85 1.8E-05 43.7 12.1 219 179-404 165-427 (432)
178 KOG1788 Uncharacterized conser 94.3 2.1 4.5E-05 47.2 16.2 251 184-449 663-983 (2799)
179 COG5152 Uncharacterized conser 94.3 0.02 4.4E-07 50.0 1.3 45 76-121 197-241 (259)
180 COG5181 HSH155 U2 snRNP splice 94.3 1.1 2.4E-05 46.6 13.6 150 166-324 606-759 (975)
181 KOG0213 Splicing factor 3b, su 94.3 0.31 6.7E-06 51.5 9.9 155 295-453 799-959 (1172)
182 KOG0213 Splicing factor 3b, su 94.3 0.79 1.7E-05 48.5 12.8 141 175-324 811-954 (1172)
183 KOG2274 Predicted importin 9 [ 94.2 1.9 4.2E-05 46.7 15.9 181 225-410 504-694 (1005)
184 KOG2274 Predicted importin 9 [ 94.0 1.7 3.7E-05 47.1 15.0 215 224-447 462-688 (1005)
185 KOG1061 Vesicle coat complex A 94.0 0.36 7.9E-06 51.2 10.0 240 165-432 50-293 (734)
186 COG5096 Vesicle coat complex, 93.9 0.67 1.5E-05 49.9 11.9 94 223-325 103-196 (757)
187 COG5096 Vesicle coat complex, 93.9 1.1 2.5E-05 48.2 13.6 162 176-364 32-196 (757)
188 KOG1062 Vesicle coat complex A 93.8 3.3 7.3E-05 44.4 16.6 248 177-452 121-419 (866)
189 PF09759 Atx10homo_assoc: Spin 93.7 0.18 3.8E-06 40.3 5.6 66 180-250 3-69 (102)
190 KOG2999 Regulator of Rac1, req 93.7 0.8 1.7E-05 46.9 11.4 150 296-446 84-240 (713)
191 KOG2879 Predicted E3 ubiquitin 93.7 0.045 9.7E-07 50.7 2.5 50 72-121 236-287 (298)
192 KOG0804 Cytoplasmic Zn-finger 93.6 0.026 5.6E-07 55.7 0.9 42 77-121 177-222 (493)
193 KOG1059 Vesicle coat complex A 93.6 2.6 5.7E-05 44.6 15.2 205 210-444 148-361 (877)
194 PF13764 E3_UbLigase_R4: E3 ub 93.6 5.6 0.00012 43.7 18.4 241 161-405 114-406 (802)
195 KOG1517 Guanine nucleotide bin 93.5 3.3 7.1E-05 45.8 16.1 158 163-325 511-672 (1387)
196 PF08569 Mo25: Mo25-like; Int 93.3 6.3 0.00014 38.8 16.8 193 254-448 76-283 (335)
197 KOG4151 Myosin assembly protei 93.2 1.4 3E-05 47.1 12.7 195 245-446 496-697 (748)
198 KOG0883 Cyclophilin type, U bo 93.1 0.058 1.3E-06 52.2 2.4 53 75-128 40-92 (518)
199 PF11698 V-ATPase_H_C: V-ATPas 93.1 0.4 8.7E-06 39.3 6.9 71 376-447 44-114 (119)
200 KOG1060 Vesicle coat complex A 93.1 6.3 0.00014 42.4 17.0 204 167-404 38-245 (968)
201 PF14668 RICTOR_V: Rapamycin-i 92.8 0.66 1.4E-05 34.6 7.1 68 351-420 4-71 (73)
202 PF02985 HEAT: HEAT repeat; I 92.7 0.18 3.8E-06 30.7 3.3 28 256-283 2-29 (31)
203 PF12031 DUF3518: Domain of un 92.6 0.36 7.8E-06 44.4 6.6 86 349-434 139-231 (257)
204 KOG1078 Vesicle coat complex C 92.6 6.4 0.00014 42.3 16.4 245 177-448 259-532 (865)
205 PF07814 WAPL: Wings apart-lik 92.5 2.6 5.7E-05 42.0 13.3 234 163-415 20-309 (361)
206 KOG2611 Neurochondrin/leucine- 92.4 11 0.00024 38.3 17.0 177 226-406 25-226 (698)
207 PF06025 DUF913: Domain of Unk 92.4 4.1 8.9E-05 40.9 14.5 127 248-374 100-244 (379)
208 KOG1240 Protein kinase contain 92.4 6.2 0.00013 44.4 16.4 252 177-447 437-724 (1431)
209 PF08045 CDC14: Cell division 92.2 1.5 3.2E-05 41.3 10.3 96 310-405 106-207 (257)
210 PF02891 zf-MIZ: MIZ/SP-RING z 92.2 0.11 2.3E-06 35.7 2.1 44 76-119 3-50 (50)
211 KOG1062 Vesicle coat complex A 92.2 7.8 0.00017 41.8 16.4 90 223-324 118-208 (866)
212 KOG1943 Beta-tubulin folding c 92.1 4.8 0.0001 44.7 15.2 199 246-452 335-577 (1133)
213 KOG1061 Vesicle coat complex A 92.0 2.2 4.9E-05 45.4 12.3 70 165-244 122-192 (734)
214 KOG1734 Predicted RING-contain 91.6 0.042 9.2E-07 50.5 -0.6 50 75-124 224-284 (328)
215 PF14447 Prok-RING_4: Prokaryo 91.5 0.092 2E-06 36.3 1.1 46 76-124 8-53 (55)
216 KOG4151 Myosin assembly protei 91.5 1 2.2E-05 48.1 9.3 154 284-443 493-651 (748)
217 PF12719 Cnd3: Nuclear condens 91.4 2.4 5.2E-05 41.0 11.3 156 223-386 38-208 (298)
218 PF11701 UNC45-central: Myosin 91.3 0.97 2.1E-05 39.3 7.6 142 256-401 5-155 (157)
219 PF06371 Drf_GBD: Diaphanous G 91.1 2.9 6.2E-05 37.2 10.9 110 337-447 67-186 (187)
220 PF06416 DUF1076: Protein of u 91.1 0.12 2.6E-06 41.1 1.5 58 68-126 32-96 (113)
221 PF08324 PUL: PUL domain; Int 90.9 3.8 8.3E-05 38.9 12.1 174 224-397 75-266 (268)
222 PF11698 V-ATPase_H_C: V-ATPas 90.9 0.35 7.7E-06 39.6 4.1 69 255-323 44-114 (119)
223 PF08569 Mo25: Mo25-like; Int 90.5 8.1 0.00017 38.1 14.0 156 290-446 71-236 (335)
224 COG5181 HSH155 U2 snRNP splice 90.4 0.64 1.4E-05 48.2 6.3 154 295-452 604-763 (975)
225 KOG1785 Tyrosine kinase negati 90.3 0.13 2.7E-06 50.1 1.2 46 77-122 371-417 (563)
226 KOG1039 Predicted E3 ubiquitin 90.2 0.19 4E-06 49.2 2.3 49 73-121 159-221 (344)
227 PF02985 HEAT: HEAT repeat; I 90.1 0.64 1.4E-05 28.1 3.9 29 421-449 2-30 (31)
228 PF14570 zf-RING_4: RING/Ubox 90.0 0.29 6.4E-06 33.0 2.4 43 78-120 1-47 (48)
229 COG5209 RCD1 Uncharacterized p 89.9 1.3 2.9E-05 40.2 7.2 149 180-331 117-275 (315)
230 PF05004 IFRD: Interferon-rela 89.9 7.9 0.00017 37.7 13.3 202 226-430 57-284 (309)
231 PF06371 Drf_GBD: Diaphanous G 89.8 2.1 4.5E-05 38.1 8.8 116 165-282 67-186 (187)
232 KOG3800 Predicted E3 ubiquitin 89.4 0.27 5.8E-06 46.1 2.5 47 77-123 2-53 (300)
233 PF12717 Cnd1: non-SMC mitotic 89.0 16 0.00034 32.4 13.7 91 267-364 1-93 (178)
234 COG5627 MMS21 DNA repair prote 88.5 0.34 7.3E-06 43.8 2.5 58 75-132 189-250 (275)
235 KOG0567 HEAT repeat-containing 88.5 22 0.00048 33.4 14.6 196 205-447 66-279 (289)
236 KOG1824 TATA-binding protein-i 88.2 28 0.00061 38.6 16.6 232 207-447 477-721 (1233)
237 KOG2032 Uncharacterized conser 88.0 22 0.00048 36.4 14.9 241 205-448 253-531 (533)
238 COG5209 RCD1 Uncharacterized p 87.9 1.4 3E-05 40.2 5.9 97 350-446 116-216 (315)
239 KOG1645 RING-finger-containing 87.8 0.32 6.8E-06 47.7 2.0 60 75-134 4-69 (463)
240 PF12719 Cnd3: Nuclear condens 87.2 22 0.00048 34.3 14.6 158 175-347 39-208 (298)
241 KOG2062 26S proteasome regulat 87.2 10 0.00022 40.7 12.4 103 254-370 519-625 (929)
242 PF08324 PUL: PUL domain; Int 87.1 4 8.8E-05 38.7 9.3 161 177-340 77-248 (268)
243 COG5175 MOT2 Transcriptional r 87.1 0.41 8.8E-06 45.6 2.2 46 78-123 17-66 (480)
244 PF12460 MMS19_C: RNAPII trans 87.1 4 8.7E-05 41.6 9.7 138 177-326 244-396 (415)
245 PF12031 DUF3518: Domain of un 86.9 1.5 3.2E-05 40.5 5.6 80 268-347 138-227 (257)
246 KOG1943 Beta-tubulin folding c 86.6 61 0.0013 36.5 18.3 255 164-450 341-617 (1133)
247 PF11701 UNC45-central: Myosin 86.6 2.5 5.4E-05 36.7 6.8 144 207-359 4-155 (157)
248 KOG4535 HEAT and armadillo rep 86.2 0.66 1.4E-05 46.7 3.2 175 270-445 407-600 (728)
249 KOG1967 DNA repair/transcripti 86.1 2 4.3E-05 46.7 6.9 146 206-357 867-1018(1030)
250 PF12460 MMS19_C: RNAPII trans 86.0 34 0.00074 34.8 15.8 185 255-449 190-395 (415)
251 KOG1058 Vesicle coat complex C 85.6 50 0.0011 35.7 16.5 231 179-449 222-464 (948)
252 PF06025 DUF913: Domain of Unk 85.6 32 0.00069 34.6 14.9 139 291-431 101-256 (379)
253 KOG4172 Predicted E3 ubiquitin 85.5 0.28 6E-06 33.6 0.2 44 77-120 9-53 (62)
254 KOG1248 Uncharacterized conser 85.5 24 0.00052 39.8 14.8 217 176-408 667-901 (1176)
255 PF05918 API5: Apoptosis inhib 85.4 4 8.7E-05 42.7 8.6 100 165-282 24-124 (556)
256 COG5215 KAP95 Karyopherin (imp 85.1 18 0.00038 37.8 12.6 206 223-446 16-248 (858)
257 COG5240 SEC21 Vesicle coat com 84.7 56 0.0012 34.3 17.1 96 177-282 278-384 (898)
258 KOG0396 Uncharacterized conser 84.5 0.47 1E-05 46.1 1.3 48 76-123 331-381 (389)
259 KOG4535 HEAT and armadillo rep 84.3 0.81 1.8E-05 46.1 2.9 178 228-406 407-604 (728)
260 KOG0301 Phospholipase A2-activ 84.0 21 0.00046 37.8 12.9 158 176-347 557-727 (745)
261 PF10408 Ufd2P_core: Ubiquitin 83.9 0.73 1.6E-05 49.6 2.6 31 23-53 579-610 (629)
262 KOG4265 Predicted E3 ubiquitin 83.8 0.58 1.3E-05 45.3 1.6 46 76-122 291-337 (349)
263 KOG1967 DNA repair/transcripti 83.7 4.5 9.7E-05 44.2 8.2 209 177-399 788-1018(1030)
264 COG5219 Uncharacterized conser 83.5 0.74 1.6E-05 49.9 2.4 49 72-121 1466-1523(1525)
265 PF08167 RIX1: rRNA processing 83.5 3.7 8E-05 36.0 6.5 108 255-363 26-143 (165)
266 PF11793 FANCL_C: FANCL C-term 83.1 0.32 6.9E-06 36.0 -0.3 47 75-121 2-66 (70)
267 cd03568 VHS_STAM VHS domain fa 82.7 8.5 0.00018 32.9 8.2 71 376-447 38-109 (144)
268 KOG4653 Uncharacterized conser 82.6 24 0.00053 38.5 13.0 208 228-446 743-962 (982)
269 KOG0567 HEAT repeat-containing 82.1 46 0.00099 31.4 13.8 89 294-403 186-278 (289)
270 KOG1240 Protein kinase contain 82.0 28 0.00061 39.5 13.5 95 225-322 436-535 (1431)
271 PF04641 Rtf2: Rtf2 RING-finge 81.3 1.1 2.3E-05 42.6 2.4 36 74-109 33-69 (260)
272 KOG2025 Chromosome condensatio 80.7 79 0.0017 34.1 15.6 115 163-293 84-200 (892)
273 KOG1493 Anaphase-promoting com 80.5 0.66 1.4E-05 34.2 0.5 46 76-121 32-81 (84)
274 KOG0915 Uncharacterized conser 80.4 15 0.00033 42.5 11.1 166 255-428 999-1181(1702)
275 KOG1001 Helicase-like transcri 80.4 0.44 9.5E-06 51.2 -0.6 47 76-123 455-502 (674)
276 KOG0828 Predicted E3 ubiquitin 79.5 1.1 2.4E-05 45.0 1.9 51 72-122 568-635 (636)
277 smart00744 RINGv The RING-vari 79.5 2.1 4.5E-05 29.2 2.7 40 78-117 2-49 (49)
278 KOG0414 Chromosome condensatio 79.4 50 0.0011 37.5 14.3 129 176-324 936-1064(1251)
279 PF11865 DUF3385: Domain of un 79.3 17 0.00036 31.7 9.0 144 295-445 10-154 (160)
280 KOG0825 PHD Zn-finger protein 79.2 0.69 1.5E-05 49.0 0.4 47 75-122 123-172 (1134)
281 KOG4653 Uncharacterized conser 79.1 18 0.00038 39.5 10.6 175 262-447 735-917 (982)
282 cd03569 VHS_Hrs_Vps27p VHS dom 78.8 14 0.00031 31.4 8.2 72 376-448 42-114 (142)
283 KOG0414 Chromosome condensatio 78.7 7.6 0.00016 43.6 8.0 126 207-348 920-1047(1251)
284 PF05918 API5: Apoptosis inhib 78.7 33 0.00071 36.1 12.3 128 297-444 25-158 (556)
285 KOG0211 Protein phosphatase 2A 78.4 63 0.0014 35.5 14.8 207 223-445 448-661 (759)
286 cd03561 VHS VHS domain family; 77.5 17 0.00036 30.5 8.3 72 376-448 38-112 (133)
287 KOG1060 Vesicle coat complex A 76.9 68 0.0015 35.0 13.9 165 258-447 39-208 (968)
288 KOG0915 Uncharacterized conser 76.4 1.1E+02 0.0024 35.9 16.2 275 165-450 995-1308(1702)
289 KOG1820 Microtubule-associated 76.1 56 0.0012 36.2 13.7 182 256-446 255-441 (815)
290 COG5194 APC11 Component of SCF 75.7 2.2 4.8E-05 31.8 2.0 44 77-121 33-81 (88)
291 PF11707 Npa1: Ribosome 60S bi 75.7 85 0.0018 30.8 16.5 152 208-365 58-239 (330)
292 KOG1058 Vesicle coat complex C 75.7 50 0.0011 35.7 12.5 131 259-408 322-466 (948)
293 cd03567 VHS_GGA VHS domain fam 74.0 21 0.00046 30.3 8.0 71 376-447 39-115 (139)
294 KOG1571 Predicted E3 ubiquitin 74.0 1.9 4.1E-05 41.9 1.8 47 70-120 300-346 (355)
295 PF12530 DUF3730: Protein of u 73.9 76 0.0016 29.4 13.5 136 298-449 3-152 (234)
296 KOG0301 Phospholipase A2-activ 73.4 61 0.0013 34.6 12.4 158 225-387 557-728 (745)
297 KOG3002 Zn finger protein [Gen 73.1 3.3 7.2E-05 39.9 3.2 60 72-138 45-105 (299)
298 PF12530 DUF3730: Protein of u 72.9 80 0.0017 29.3 15.6 126 223-363 12-151 (234)
299 KOG1078 Vesicle coat complex C 72.3 1.3E+02 0.0028 32.9 14.6 61 223-288 256-316 (865)
300 PF04564 U-box: U-box domain; 71.9 2.1 4.5E-05 31.9 1.2 34 74-109 38-71 (73)
301 PF11865 DUF3385: Domain of un 71.7 32 0.0007 29.9 8.9 140 254-403 10-155 (160)
302 PF10367 Vps39_2: Vacuolar sor 71.7 4.4 9.6E-05 32.3 3.3 36 68-103 71-108 (109)
303 KOG1991 Nuclear transport rece 71.7 1.8E+02 0.0038 32.7 16.3 234 205-446 409-669 (1010)
304 smart00504 Ubox Modified RING 71.2 1.7 3.6E-05 31.0 0.5 28 76-105 36-63 (63)
305 KOG1991 Nuclear transport rece 70.3 1.9E+02 0.0041 32.5 16.1 132 254-388 410-560 (1010)
306 PF00790 VHS: VHS domain; Int 70.2 29 0.00063 29.3 8.1 72 376-448 43-118 (140)
307 PF14726 RTTN_N: Rotatin, an a 69.8 11 0.00024 29.8 4.9 66 254-319 30-95 (98)
308 KOG3161 Predicted E3 ubiquitin 69.5 3.9 8.5E-05 42.6 2.9 37 75-114 11-51 (861)
309 KOG0827 Predicted E3 ubiquitin 69.4 3.4 7.3E-05 40.5 2.3 49 73-122 2-57 (465)
310 PF14225 MOR2-PAG1_C: Cell mor 69.2 85 0.0018 29.8 11.7 164 225-407 75-256 (262)
311 KOG4185 Predicted E3 ubiquitin 68.9 4.4 9.5E-05 39.2 3.1 51 88-138 22-77 (296)
312 PRK14707 hypothetical protein; 68.6 3E+02 0.0065 34.1 19.0 266 166-444 165-441 (2710)
313 KOG4275 Predicted E3 ubiquitin 67.4 1.2 2.7E-05 41.7 -1.0 39 75-120 300-341 (350)
314 PF08167 RIX1: rRNA processing 67.2 12 0.00026 32.8 5.2 110 207-325 26-144 (165)
315 smart00288 VHS Domain present 67.0 38 0.00082 28.4 8.0 72 376-448 38-111 (133)
316 PRK11088 rrmA 23S rRNA methylt 65.0 2.5 5.5E-05 40.3 0.6 27 75-101 2-31 (272)
317 KOG2956 CLIP-associating prote 64.8 1.5E+02 0.0033 30.4 12.7 181 166-362 288-476 (516)
318 KOG1820 Microtubule-associated 64.7 66 0.0014 35.7 11.2 174 174-362 264-442 (815)
319 PF11707 Npa1: Ribosome 60S bi 64.7 1.5E+02 0.0032 29.1 16.7 161 166-327 58-240 (330)
320 PF14666 RICTOR_M: Rapamycin-i 64.3 1.2E+02 0.0026 28.0 13.8 128 308-447 77-224 (226)
321 PF04499 SAPS: SIT4 phosphatas 63.3 91 0.002 32.4 11.5 113 335-449 20-150 (475)
322 COG5098 Chromosome condensatio 63.3 49 0.0011 35.5 9.3 110 338-450 301-418 (1128)
323 KOG3665 ZYG-1-like serine/thre 63.1 64 0.0014 35.3 10.8 193 186-402 494-694 (699)
324 PF01347 Vitellogenin_N: Lipop 62.9 2.1E+02 0.0045 30.7 14.9 76 255-347 487-569 (618)
325 COG5116 RPN2 26S proteasome re 62.7 1.1E+02 0.0024 32.2 11.4 63 293-363 549-615 (926)
326 PF05883 Baculo_RING: Baculovi 62.6 5 0.00011 33.5 1.8 44 75-119 26-78 (134)
327 KOG0211 Protein phosphatase 2A 62.5 2.5E+02 0.0054 31.0 15.1 186 255-449 438-626 (759)
328 KOG3665 ZYG-1-like serine/thre 62.0 66 0.0014 35.2 10.6 197 235-449 494-698 (699)
329 COG5218 YCG1 Chromosome conden 61.2 1.3E+02 0.0029 31.7 11.8 95 295-396 91-190 (885)
330 COG5634 Uncharacterized conser 60.7 12 0.00026 32.6 3.7 68 72-143 56-123 (223)
331 cd03565 VHS_Tom1 VHS domain fa 60.1 69 0.0015 27.2 8.4 73 376-448 39-115 (141)
332 KOG2933 Uncharacterized conser 59.8 57 0.0012 31.5 8.4 135 297-445 90-231 (334)
333 PF10915 DUF2709: Protein of u 59.1 8.5 0.00019 33.9 2.7 38 75-121 87-124 (238)
334 KOG2025 Chromosome condensatio 59.0 45 0.00097 35.9 8.2 104 294-401 84-189 (892)
335 PF10363 DUF2435: Protein of u 59.0 19 0.00041 28.1 4.4 70 257-327 6-75 (92)
336 smart00638 LPD_N Lipoprotein N 58.5 1.6E+02 0.0034 31.4 12.8 206 205-443 310-540 (574)
337 PF08216 CTNNBL: Catenin-beta- 58.1 21 0.00046 28.7 4.5 39 350-388 62-100 (108)
338 PF08389 Xpo1: Exportin 1-like 57.7 43 0.00094 27.9 7.0 103 254-358 26-148 (148)
339 KOG4464 Signaling protein RIC- 56.1 2.3E+02 0.005 28.6 12.7 129 258-386 49-198 (532)
340 PRK14707 hypothetical protein; 55.8 5E+02 0.011 32.4 19.7 261 164-437 205-476 (2710)
341 KOG2062 26S proteasome regulat 55.1 2.4E+02 0.0051 30.9 12.6 52 349-409 570-622 (929)
342 COG5116 RPN2 26S proteasome re 54.5 33 0.00071 35.9 6.3 85 225-324 565-650 (926)
343 cd03569 VHS_Hrs_Vps27p VHS dom 53.4 63 0.0014 27.4 7.1 71 337-407 42-116 (142)
344 COG4530 Uncharacterized protei 53.2 10 0.00022 30.2 2.0 30 75-104 9-43 (129)
345 COG5220 TFB3 Cdk activating ki 53.0 7.5 0.00016 35.5 1.4 41 75-115 10-56 (314)
346 cd03572 ENTH_epsin_related ENT 52.5 75 0.0016 26.3 7.1 71 377-448 40-119 (122)
347 cd03568 VHS_STAM VHS domain fa 52.4 64 0.0014 27.5 7.0 72 337-408 38-113 (144)
348 PF12231 Rif1_N: Rap1-interact 52.2 1.5E+02 0.0032 29.7 10.7 138 308-449 59-205 (372)
349 PF03854 zf-P11: P-11 zinc fin 52.1 5.2 0.00011 26.8 0.2 36 86-122 11-47 (50)
350 KOG2930 SCF ubiquitin ligase, 51.9 11 0.00024 29.7 2.0 26 93-119 81-106 (114)
351 PF12726 SEN1_N: SEN1 N termin 51.9 1.8E+02 0.0038 32.2 12.1 110 296-407 442-555 (727)
352 KOG0825 PHD Zn-finger protein 51.1 18 0.00038 39.0 3.9 49 68-116 89-149 (1134)
353 KOG1020 Sister chromatid cohes 50.9 1.8E+02 0.0039 34.4 11.7 136 295-446 816-958 (1692)
354 cd00730 rubredoxin Rubredoxin; 50.8 7.2 0.00016 26.7 0.7 13 71-83 30-42 (50)
355 KOG2137 Protein kinase [Signal 50.6 2.7E+02 0.006 30.1 12.5 130 294-431 388-520 (700)
356 KOG1566 Conserved protein Mo25 50.2 2.5E+02 0.0055 27.3 13.9 214 163-386 78-311 (342)
357 KOG1941 Acetylcholine receptor 50.1 9.3 0.0002 37.5 1.6 43 75-117 365-412 (518)
358 KOG2032 Uncharacterized conser 49.9 3.2E+02 0.0068 28.4 15.8 168 270-446 233-414 (533)
359 PF06012 DUF908: Domain of Unk 48.7 74 0.0016 31.2 7.8 72 311-382 238-323 (329)
360 PF07814 WAPL: Wings apart-lik 48.3 2.7E+02 0.0058 27.7 11.8 90 338-429 23-116 (361)
361 KOG4337 Microsomal triglycerid 46.8 4E+02 0.0087 28.7 14.9 146 251-404 356-522 (896)
362 PF00301 Rubredoxin: Rubredoxi 46.7 8.1 0.00018 26.0 0.5 14 70-83 29-42 (47)
363 PF14500 MMS19_N: Dos2-interac 46.3 2.6E+02 0.0057 26.4 14.3 136 259-404 4-152 (262)
364 cd03561 VHS VHS domain family; 45.8 93 0.002 26.0 6.9 72 337-408 38-115 (133)
365 PF04064 DUF384: Domain of unk 45.7 89 0.0019 22.1 5.6 48 358-405 2-49 (58)
366 PF11864 DUF3384: Domain of un 45.5 2.5E+02 0.0053 29.1 11.4 20 267-286 42-61 (464)
367 PF14500 MMS19_N: Dos2-interac 45.3 2.1E+02 0.0046 27.0 10.0 145 299-449 3-154 (262)
368 KOG0298 DEAD box-containing he 44.8 8.8 0.00019 43.6 0.6 45 72-117 1150-1195(1394)
369 PF14663 RasGEF_N_2: Rapamycin 44.8 1E+02 0.0022 25.1 6.8 39 296-334 9-47 (115)
370 PF10363 DUF2435: Protein of u 44.4 1E+02 0.0022 24.0 6.4 68 339-409 6-76 (92)
371 cd00197 VHS_ENTH_ANTH VHS, ENT 44.0 1.7E+02 0.0036 23.5 8.1 71 376-447 38-114 (115)
372 KOG2956 CLIP-associating prote 44.0 3.6E+02 0.0078 27.8 11.5 171 225-406 300-478 (516)
373 PF13251 DUF4042: Domain of un 43.3 2E+02 0.0044 25.6 8.9 135 227-363 1-174 (182)
374 PF10272 Tmpp129: Putative tra 43.1 19 0.00041 35.7 2.6 38 88-125 301-355 (358)
375 KOG4362 Transcriptional regula 42.0 11 0.00024 40.2 0.9 63 75-137 21-85 (684)
376 PF10521 DUF2454: Protein of u 41.7 1E+02 0.0022 29.5 7.4 71 254-324 119-203 (282)
377 PF14666 RICTOR_M: Rapamycin-i 41.1 2.9E+02 0.0064 25.5 10.4 129 268-405 78-225 (226)
378 PF06012 DUF908: Domain of Unk 40.7 70 0.0015 31.4 6.2 75 270-344 238-324 (329)
379 smart00288 VHS Domain present 40.4 1.3E+02 0.0028 25.1 7.0 70 337-406 38-112 (133)
380 KOG1814 Predicted E3 ubiquitin 40.3 33 0.00072 34.2 3.7 33 75-107 184-219 (445)
381 COG5656 SXM1 Importin, protein 39.9 5.5E+02 0.012 28.3 14.4 236 205-446 407-668 (970)
382 PF14225 MOR2-PAG1_C: Cell mor 39.7 3.4E+02 0.0073 25.7 16.0 142 295-449 60-218 (262)
383 PF05605 zf-Di19: Drought indu 39.5 37 0.0008 23.4 2.9 33 74-118 1-39 (54)
384 cd08050 TAF6 TATA Binding Prot 39.2 1.8E+02 0.0038 28.8 8.8 107 255-361 211-338 (343)
385 TIGR00373 conserved hypothetic 39.2 35 0.00076 29.6 3.4 39 70-124 104-142 (158)
386 KOG0883 Cyclophilin type, U bo 38.7 14 0.00029 36.5 0.8 49 72-120 98-156 (518)
387 KOG4464 Signaling protein RIC- 38.7 4.4E+02 0.0095 26.8 13.2 150 298-447 48-227 (532)
388 PF14353 CpXC: CpXC protein 38.3 18 0.00038 30.1 1.4 47 75-121 1-49 (128)
389 KOG1940 Zn-finger protein [Gen 38.1 28 0.0006 33.1 2.8 43 75-118 158-204 (276)
390 PF12463 DUF3689: Protein of u 37.9 3.9E+02 0.0084 25.9 11.9 103 311-413 48-181 (303)
391 PF05290 Baculo_IE-1: Baculovi 37.9 37 0.0008 28.3 3.0 50 74-123 79-134 (140)
392 KOG4231 Intracellular membrane 37.2 49 0.0011 34.1 4.4 69 378-447 330-398 (763)
393 COG5098 Chromosome condensatio 37.1 1.4E+02 0.003 32.3 7.7 106 297-408 301-418 (1128)
394 cd03567 VHS_GGA VHS domain fam 36.4 1.5E+02 0.0032 25.1 6.7 71 337-407 39-118 (139)
395 PF01347 Vitellogenin_N: Lipop 35.9 1.3E+02 0.0027 32.4 7.8 165 254-443 395-584 (618)
396 KOG2137 Protein kinase [Signal 35.8 80 0.0017 34.0 5.9 120 223-348 400-520 (700)
397 KOG1086 Cytosolic sorting prot 35.8 4.6E+02 0.01 26.7 10.6 31 258-288 177-207 (594)
398 PRK05776 DNA topoisomerase I; 35.7 1E+02 0.0022 33.6 6.9 79 11-91 532-613 (670)
399 PRK06266 transcription initiat 35.7 89 0.0019 27.7 5.4 54 71-140 113-167 (178)
400 PF08216 CTNNBL: Catenin-beta- 35.5 27 0.00059 28.1 1.9 35 180-216 63-97 (108)
401 PF08506 Cse1: Cse1; InterPro 34.8 3.1E+02 0.0068 27.4 9.8 127 309-443 225-370 (370)
402 PF04821 TIMELESS: Timeless pr 34.6 3.6E+02 0.0079 25.5 9.8 86 225-327 56-152 (266)
403 KOG2199 Signal transducing ada 34.5 1.9E+02 0.0042 28.9 7.8 72 376-448 46-118 (462)
404 KOG2073 SAP family cell cycle 34.1 2.2E+02 0.0048 31.8 9.1 65 367-431 182-251 (838)
405 PF00790 VHS: VHS domain; Int 33.7 1.3E+02 0.0029 25.2 6.1 71 337-407 43-120 (140)
406 KOG1020 Sister chromatid cohes 32.7 3.6E+02 0.0077 32.1 10.5 108 206-327 816-924 (1692)
407 KOG2933 Uncharacterized conser 32.4 2.1E+02 0.0046 27.7 7.6 130 259-402 93-231 (334)
408 PF14726 RTTN_N: Rotatin, an a 31.5 2.4E+02 0.0051 22.3 6.6 63 337-400 31-95 (98)
409 PF03130 HEAT_PBS: PBS lyase H 31.5 37 0.0008 19.6 1.6 26 311-346 1-26 (27)
410 COG5218 YCG1 Chromosome conden 31.4 6.8E+02 0.015 26.8 12.6 111 247-363 86-196 (885)
411 PF14446 Prok-RING_1: Prokaryo 31.1 33 0.00071 23.9 1.5 28 75-102 5-36 (54)
412 PF11791 Aconitase_B_N: Aconit 30.7 99 0.0022 26.5 4.6 93 297-402 24-120 (154)
413 KOG0314 Predicted E3 ubiquitin 30.5 35 0.00075 34.8 2.2 68 70-139 214-285 (448)
414 PLN02195 cellulose synthase A 30.5 36 0.00079 38.1 2.5 45 77-121 8-59 (977)
415 PF07800 DUF1644: Protein of u 30.3 16 0.00034 31.4 -0.2 20 74-93 1-20 (162)
416 PF12830 Nipped-B_C: Sister ch 29.9 2.4E+02 0.0053 25.0 7.4 64 377-447 10-73 (187)
417 KOG3579 Predicted E3 ubiquitin 29.7 28 0.00061 32.8 1.3 63 75-138 268-339 (352)
418 PF07295 DUF1451: Protein of u 29.6 2.6E+02 0.0056 23.9 7.0 74 19-92 44-131 (146)
419 KOG1832 HIV-1 Vpr-binding prot 29.5 2.8E+02 0.006 31.1 8.6 66 307-372 365-430 (1516)
420 PLN03205 ATR interacting prote 28.5 2.2E+02 0.0047 28.7 7.1 108 296-403 324-444 (652)
421 PLN02189 cellulose synthase 28.5 33 0.00071 38.7 1.7 46 76-121 35-87 (1040)
422 PF01603 B56: Protein phosphat 28.3 6.4E+02 0.014 25.6 12.4 76 288-363 126-204 (409)
423 PF00096 zf-C2H2: Zinc finger, 27.2 19 0.00041 19.6 -0.2 13 76-88 1-13 (23)
424 smart00531 TFIIE Transcription 26.5 1.1E+02 0.0024 26.1 4.4 40 72-123 96-136 (147)
425 PF11864 DUF3384: Domain of un 26.3 7.3E+02 0.016 25.6 18.6 80 349-434 230-316 (464)
426 PF04499 SAPS: SIT4 phosphatas 26.2 2.7E+02 0.0058 29.0 7.9 117 197-323 12-147 (475)
427 PF09538 FYDLN_acid: Protein o 26.2 39 0.00084 27.3 1.4 13 75-87 9-21 (108)
428 PHA02825 LAP/PHD finger-like p 26.1 87 0.0019 27.1 3.5 48 74-122 7-60 (162)
429 PF07923 N1221: N1221-like pro 25.6 1.1E+02 0.0024 29.4 4.7 54 293-346 58-126 (293)
430 PF10521 DUF2454: Protein of u 25.4 5.1E+02 0.011 24.6 9.3 51 295-345 119-171 (282)
431 KOG2549 Transcription initiati 25.4 7.9E+02 0.017 25.9 10.7 54 392-447 314-369 (576)
432 smart00567 EZ_HEAT E-Z type HE 25.4 1.1E+02 0.0024 17.7 3.0 27 311-347 3-29 (30)
433 PF09324 DUF1981: Domain of un 25.4 3E+02 0.0066 20.9 6.3 67 374-445 16-85 (86)
434 KOG2312 Predicted transcriptio 25.3 9 0.00019 40.5 -3.0 151 232-384 13-170 (847)
435 COG5236 Uncharacterized conser 25.1 47 0.001 32.2 1.9 47 74-121 60-108 (493)
436 PF11229 DUF3028: Protein of u 25.0 8.2E+02 0.018 25.7 12.9 187 255-451 98-309 (589)
437 cd00183 TFIIS_I N-terminal dom 25.0 2.9E+02 0.0063 20.5 7.2 54 392-447 19-72 (76)
438 TIGR03504 FimV_Cterm FimV C-te 25.0 1.1E+02 0.0024 20.2 3.1 29 418-446 16-44 (44)
439 COG1773 Rubredoxin [Energy pro 24.8 35 0.00077 23.8 0.8 14 70-83 31-44 (55)
440 TIGR02300 FYDLN_acid conserved 24.7 42 0.00091 27.8 1.3 26 75-100 9-39 (129)
441 PHA02862 5L protein; Provision 24.4 62 0.0013 27.4 2.3 55 78-139 5-65 (156)
442 PRK03564 formate dehydrogenase 23.6 2E+02 0.0043 28.0 5.9 44 74-118 186-234 (309)
443 KOG1812 Predicted E3 ubiquitin 23.6 57 0.0012 32.8 2.4 33 75-107 146-182 (384)
444 COG2176 PolC DNA polymerase II 23.4 69 0.0015 36.7 3.0 44 68-123 907-952 (1444)
445 PF04388 Hamartin: Hamartin pr 23.1 1E+03 0.022 26.0 11.9 62 348-409 82-144 (668)
446 PF08711 Med26: TFIIS helical 23.0 2.5E+02 0.0054 19.0 5.7 45 400-446 3-48 (53)
447 PRK13908 putative recombinatio 22.8 1.2E+02 0.0025 27.2 3.8 74 35-108 98-182 (204)
448 PF09162 Tap-RNA_bind: Tap, RN 22.5 47 0.001 25.7 1.1 21 88-108 9-29 (88)
449 PF13894 zf-C2H2_4: C2H2-type 21.0 33 0.00072 18.3 0.0 11 76-86 1-11 (24)
450 KOG4231 Intracellular membrane 20.9 86 0.0019 32.4 2.9 61 223-283 339-399 (763)
451 PF06844 DUF1244: Protein of u 20.6 60 0.0013 23.5 1.3 12 97-108 12-23 (68)
452 KOG1566 Conserved protein Mo25 20.4 8.1E+02 0.018 24.0 16.4 194 253-448 78-286 (342)
453 PF07539 DRIM: Down-regulated 20.2 5.3E+02 0.012 21.8 8.1 127 281-416 3-135 (141)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=1.3e-27 Score=268.59 Aligned_cols=278 Identities=18% Similarity=0.249 Sum_probs=241.4
Q ss_pred hhhHHHHHHHhcC---CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcc
Q 012813 163 RDHFLSLLKKMSA---TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 239 (456)
Q Consensus 163 ~~~i~~Lv~~L~~---~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L 239 (456)
...+..+++.|.+ +.+.++.|+..|+.+++.++++|..|.+..|+||.|+.+|+ +.+..++++|+.+|.++
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~------sg~~~vk~nAaaaL~nL 85 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR------SGTLGAKVNAAAVLGVL 85 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc------CCCHHHHHHHHHHHHHH
Confidence 4567889999953 46889999999999999999999999866899999999998 45789999999999999
Q ss_pred ccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC---ccchh-hcccCccHHHHhccccCC---hhHH
Q 012813 240 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD---SNKEV-IGKSGALKPLIDLLDEGH---QSAM 312 (456)
Q Consensus 240 s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~---~~~~~-i~~~G~i~~Lv~lL~~~~---~~~~ 312 (456)
+.+++++..++.. |++|.|+++|++|+.+.+++|+++|++|+... .++.. ++..|+||.|+.+|++++ ..++
T Consensus 86 S~~e~nk~~Iv~~-GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~ 164 (2102)
T PLN03200 86 CKEEDLRVKVLLG-GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVE 164 (2102)
T ss_pred hcCHHHHHHHHHc-CChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHH
Confidence 9999999999974 69999999999999999999999999999863 44544 557999999999999874 3356
Q ss_pred HHHHHHHHHhccCchhhHH-HHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcC
Q 012813 313 KDVASAIFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIREST 388 (456)
Q Consensus 313 ~~a~~aL~~L~~~~~~~~~-~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~ 388 (456)
+.++.+|+|||.+.+++.. +++.|+||.|+++|.++ ..++.|+.+|.+++.+ ++++..+++.|+|+.|+++|+++.
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~ 244 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN 244 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC
Confidence 7788999999999998865 47999999999999976 6789999999999876 789999999999999999998765
Q ss_pred ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCC---------HHHHHHHHHHHHHHhc
Q 012813 389 CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGT---------ARAKRKATGILERLKR 448 (456)
Q Consensus 389 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~---------~~~k~~A~~~L~~l~~ 448 (456)
++.+|++|+++|++|+.++.+..+.++ +.|+++.|+.++...+ ...++.|.|+|.|+++
T Consensus 245 ~~~VRE~AA~AL~nLAs~s~e~r~~Iv-~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 245 EVSVRAEAAGALEALSSQSKEAKQAIA-DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHH-HCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 578999999999999998876544455 5799999999987543 3469999999999987
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-26 Score=229.92 Aligned_cols=279 Identities=15% Similarity=0.146 Sum_probs=241.2
Q ss_pred hhhHHHHHHHhcC--CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 163 RDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 163 ~~~i~~Lv~~L~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
.|.++.+|+.|+. ++..|.+|+|+|.+++.++.+..+.+++ +|++|.|+.++. +.+..+++.|+++|.|++
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~-agavp~fi~Ll~------s~~~~v~eQavWALgNIa 180 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD-AGAVPIFIQLLS------SPSADVREQAVWALGNIA 180 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc-CCchHHHHHHhc------CCcHHHHHHHHHHHhccc
Confidence 3899999999963 3788999999999999999888888999 999999999999 668899999999999999
Q ss_pred cCcchhHHHhcCCCCHHHHHHHHhcCCH-HHHHHHHHHHHHhccCCccchhhcc-cCccHHHHhccccCChhHHHHHHHH
Q 012813 241 IHDNNKKLVAETPMVIPLLMDALRSGTI-ETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASA 318 (456)
Q Consensus 241 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~-~~~~~aa~aL~~Ls~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~a~~a 318 (456)
.+....+.++-..|+++.|+.++...+. ...++++|+|.|||...+....+.. ..++|.|..+|.+.|+++..+|+||
T Consensus 181 gds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WA 260 (514)
T KOG0166|consen 181 GDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWA 260 (514)
T ss_pred cCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9887544444444688889999987764 7899999999999997754444433 5789999999999999999999999
Q ss_pred HHHhccCchhhHH-HHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH-HHHHHHhhCcHHHHHHHhhhcCChhHHH
Q 012813 319 IFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRESTCDRNKE 394 (456)
Q Consensus 319 L~~L~~~~~~~~~-~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 394 (456)
|.+|+.....+.. +++.|++|.|+++|... .++..|+.++.|++.+.+ -.+.++++|+++.|..++..+..+..++
T Consensus 261 lsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikk 340 (514)
T KOG0166|consen 261 LSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKK 340 (514)
T ss_pred HHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHH
Confidence 9999976655554 46899999999999965 577789999999998755 5677789999999999998654466889
Q ss_pred HHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 395 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 395 ~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
.|+|++.||+.++.++.++++. +|+++.|+.+++++..++|..|+|++.|+...
T Consensus 341 EAcW~iSNItAG~~~qiqaVid-a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 341 EACWTISNITAGNQEQIQAVID-ANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHHHHHHhhcCCHHHHHHHHH-cccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 9999999999999988888886 59999999999999999999999999998643
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=5e-26 Score=255.92 Aligned_cols=284 Identities=19% Similarity=0.225 Sum_probs=244.2
Q ss_pred cchhhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHH
Q 012813 159 TEADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 237 (456)
Q Consensus 159 ~~~~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 237 (456)
.+.+.++++.|++.|++ +...|+.|++.|++++..+++++..+.+ .|+||.|+.+|+ +.+..++++|+++|.
T Consensus 441 aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie-aGaIP~LV~LL~------s~~~~iqeeAawAL~ 513 (2102)
T PLN03200 441 ALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA-AGGIPPLVQLLE------TGSQKAKEDSATVLW 513 (2102)
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 34567799999999975 4678999999999999988899999999 999999999999 557899999999999
Q ss_pred ccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccc-----------------------------
Q 012813 238 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK----------------------------- 288 (456)
Q Consensus 238 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~----------------------------- 288 (456)
|++.++++.+.++...|++|.|+++|++++.+.++.++++|++|+...++.
T Consensus 514 NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIls 593 (2102)
T PLN03200 514 NLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLS 593 (2102)
T ss_pred HHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Confidence 999988776766655579999999999999999999999999996432211
Q ss_pred ---------hhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCc-hhhHHHHhcCcHHHHHHHHcCC--chHHHHHH
Q 012813 289 ---------EVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLA 356 (456)
Q Consensus 289 ---------~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~ 356 (456)
......|+++.|+++|+++++..++.|+++|.+++... +.+..++..|+||+|+.+|.++ +.+..+++
T Consensus 594 l~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~ 673 (2102)
T PLN03200 594 VASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSAR 673 (2102)
T ss_pred hcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHH
Confidence 01123689999999999999999999999999999755 5678889999999999999976 67888999
Q ss_pred HHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHH
Q 012813 357 ILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTAR 434 (456)
Q Consensus 357 ~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~ 434 (456)
+|.+++.+ ++.+..+++.|+|+.|++++... +..+++.|+.+|.||+...+.. .++.. .|++++|++++++|+++
T Consensus 674 AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~~e~~-~ei~~-~~~I~~Lv~lLr~G~~~ 750 (2102)
T PLN03200 674 ALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSDPEVA-AEALA-EDIILPLTRVLREGTLE 750 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcCchHH-HHHHh-cCcHHHHHHHHHhCChH
Confidence 99999964 56677889999999999999875 4899999999999999988643 45554 58899999999999999
Q ss_pred HHHHHHHHHHHHhcchhc
Q 012813 435 AKRKATGILERLKRTVNL 452 (456)
Q Consensus 435 ~k~~A~~~L~~l~~~~~~ 452 (456)
.|+.|+++|.+|+++-+.
T Consensus 751 ~k~~Aa~AL~~L~~~~~~ 768 (2102)
T PLN03200 751 GKRNAARALAQLLKHFPV 768 (2102)
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 999999999999876543
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.1e-27 Score=218.26 Aligned_cols=282 Identities=16% Similarity=0.226 Sum_probs=251.9
Q ss_pred cccchhhhhHHHHHHHh-cCCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHH
Q 012813 157 GITEADRDHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITT 235 (456)
Q Consensus 157 ~~~~~~~~~i~~Lv~~L-~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~ 235 (456)
+..+.+..++..|+..+ ....++|..++++|.+|+.. +++|..|.. .|++..|.++-+ +.+..++.++..+
T Consensus 119 k~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~-sGaL~pltrLak------skdirvqrnatga 190 (550)
T KOG4224|consen 119 KGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIAR-SGALEPLTRLAK------SKDIRVQRNATGA 190 (550)
T ss_pred ceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhh-ccchhhhHhhcc------cchhhHHHHHHHH
Confidence 33455566676666554 56688999999999999995 889999999 899999999655 5688999999999
Q ss_pred HHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccC--ccHHHHhccccCChhHHH
Q 012813 236 LLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSG--ALKPLIDLLDEGHQSAMK 313 (456)
Q Consensus 236 L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G--~i~~Lv~lL~~~~~~~~~ 313 (456)
|.|++...++|+.++..| .+|.||.++++++..++..++.+|.+++.+..++..+.+.| .|+.|+++++++++.++.
T Consensus 191 LlnmThs~EnRr~LV~aG-~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkc 269 (550)
T KOG4224|consen 191 LLNMTHSRENRRVLVHAG-GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKC 269 (550)
T ss_pred HHHhhhhhhhhhhhhccC-CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHH
Confidence 999999999999999885 79999999999999999999999999999999999999887 999999999999999999
Q ss_pred HHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChh
Q 012813 314 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR 391 (456)
Q Consensus 314 ~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 391 (456)
.|..+|+||+...+-+..++++|.+|.++++|+++ ...-..+.++.|++-+|-+-..+.++|++.+||.+|+-++++.
T Consensus 270 qA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEe 349 (550)
T KOG4224|consen 270 QAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEE 349 (550)
T ss_pred HHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchh
Confidence 99999999999999999999999999999999987 5666778889999999988888999999999999999888788
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 392 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 392 ~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
.|-+|+.+||+|+...+.. +..+.+.|+++.+..|+.++.-.++..-...+..|+-
T Consensus 350 iqchAvstLrnLAasse~n-~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 350 IQCHAVSTLRNLAASSEHN-VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred hhhhHHHHHHHHhhhhhhh-hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 9999999999999977654 4555568999999999999999999888888887764
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2e-25 Score=208.14 Aligned_cols=287 Identities=17% Similarity=0.224 Sum_probs=254.5
Q ss_pred cccccchhhhhHHHHHHHhc-CCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHH
Q 012813 155 EEGITEADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVI 233 (456)
Q Consensus 155 ~~~~~~~~~~~i~~Lv~~L~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~ 233 (456)
.+++-++..|++..+.+.-+ .+..+|..+...|.+++. +.++|+.++. +|++|.||+++. +.|.+++..+.
T Consensus 158 ~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~-aG~lpvLVsll~------s~d~dvqyyct 229 (550)
T KOG4224|consen 158 SNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVH-AGGLPVLVSLLK------SGDLDVQYYCT 229 (550)
T ss_pred cchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhc-cCCchhhhhhhc------cCChhHHHHHH
Confidence 45555667788888888333 346789999999999998 7999999999 999999999999 56899999999
Q ss_pred HHHHccccCcchhHHHhcCC-CCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHH
Q 012813 234 TTLLNLSIHDNNKKLVAETP-MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAM 312 (456)
Q Consensus 234 ~~L~~Ls~~~~~~~~i~~~~-~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~ 312 (456)
.+|.|++.+...|+.+++.+ .++|.|++++.++++.++..|.-+|.+|+...++...|++.|.+|.++++|+++.....
T Consensus 230 taisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~pli 309 (550)
T KOG4224|consen 230 TAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLI 309 (550)
T ss_pred HHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHH
Confidence 99999999999999988763 58999999999999999999999999999999999999999999999999998877788
Q ss_pred HHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcC
Q 012813 313 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIREST 388 (456)
Q Consensus 313 ~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~ 388 (456)
-....+++|++..+-|-..++++|.+.+|+++|.-+ +.+-+|+.+|++|+. ...++..|.+.|+|+.+.+++..+.
T Consensus 310 lasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p 389 (550)
T KOG4224|consen 310 LASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP 389 (550)
T ss_pred HHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC
Confidence 888999999999999999999999999999999854 588999999999998 5678999999999999999999764
Q ss_pred ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhc
Q 012813 389 CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 452 (456)
Q Consensus 389 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~~ 452 (456)
-.+|..-..++..|+..+..+ ..+-+.|.++.|+.+..+.+..++.+|+.+|-|++.-..+
T Consensus 390 -vsvqseisac~a~Lal~d~~k--~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 390 -VSVQSEISACIAQLALNDNDK--EALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred -hhHHHHHHHHHHHHHhccccH--HHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence 778888888888888876543 5555679999999999999999999999999999865443
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.92 E-value=5.7e-24 Score=196.95 Aligned_cols=278 Identities=16% Similarity=0.128 Sum_probs=234.4
Q ss_pred hhhhHHHHHHHhc-CC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcc
Q 012813 162 DRDHFLSLLKKMS-AT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 239 (456)
Q Consensus 162 ~~~~i~~Lv~~L~-~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L 239 (456)
+.|.++.+++++. .. .-.+.+|+|+|.+++.+.....+.+++ +|++|.++.+|. +.+.+++++++++|.|+
T Consensus 112 daGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd-~~AVPlfiqlL~------s~~~~V~eQavWALGNi 184 (526)
T COG5064 112 DAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVD-AGAVPLFIQLLS------STEDDVREQAVWALGNI 184 (526)
T ss_pred hccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEe-CCchHHHHHHHc------CchHHHHHHHHHHhccc
Confidence 4688999999994 33 345789999999999987666677788 999999999999 55679999999999999
Q ss_pred ccCcc-hhHHHhcCCCCHHHHHHHHhcCC--HHHHHHHHHHHHHhccCCccchhhc-ccCccHHHHhccccCChhHHHHH
Q 012813 240 SIHDN-NKKLVAETPMVIPLLMDALRSGT--IETRSNAAAALFTLSALDSNKEVIG-KSGALKPLIDLLDEGHQSAMKDV 315 (456)
Q Consensus 240 s~~~~-~~~~i~~~~~~i~~Lv~lL~~~~--~~~~~~aa~aL~~Ls~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~a 315 (456)
+.+.+ +|..+... |++..++.+|.+.. ....+++.|+|.|||........-. -..++|.|.+|+.+.++++...|
T Consensus 185 AGDS~~~RD~vL~~-galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA 263 (526)
T COG5064 185 AGDSEGCRDYVLQC-GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDA 263 (526)
T ss_pred cCCchhHHHHHHhc-CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 99887 56666665 58888999998764 5889999999999998543221111 13578999999999999999999
Q ss_pred HHHHHHhccCchhhHHH-HhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHH-HHHHHhhCcHHHHHHHhhhcCChh
Q 012813 316 ASAIFNLCITHENKARA-VRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRA-VEEIGDLGGVSCMLRIIRESTCDR 391 (456)
Q Consensus 316 ~~aL~~L~~~~~~~~~~-v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~ 391 (456)
+|+|..|+..+..+..+ ++.|..+.|+++|.++ .++..|+....|+..+.+. -+.++++|+++.+..+|.+.. +.
T Consensus 264 ~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~ 342 (526)
T COG5064 264 CWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-EN 342 (526)
T ss_pred HHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-hh
Confidence 99999999887665554 6889999999999976 6678899999999987654 466789999999999998765 78
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 392 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 392 ~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
++..|||++.|++.++.+..+.+++ ++.+|+|++++.+..-.+|..|+|++.|...+
T Consensus 343 irKEaCWTiSNITAGnteqiqavid-~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 343 IRKEACWTISNITAGNTEQIQAVID-ANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred hhhhhheeecccccCCHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999988888875 69999999999999999999999999998654
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.2e-23 Score=207.21 Aligned_cols=285 Identities=15% Similarity=0.163 Sum_probs=243.3
Q ss_pred chhhhhHHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHc
Q 012813 160 EADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 238 (456)
Q Consensus 160 ~~~~~~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 238 (456)
..+.|+++.++..+.+. ..++++|+++|.+++.+++.+|..+.+ .|+++.|+.++.... ......++.|+|.|
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~-~g~l~pLl~~l~~~~-----~~~~lRn~tW~LsN 221 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLS-CGALDPLLRLLNKSD-----KLSMLRNATWTLSN 221 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHh-hcchHHHHHHhcccc-----chHHHHHHHHHHHH
Confidence 34578999999999754 678999999999999999999999999 999999999998431 23688999999999
Q ss_pred cccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccCChhHHHHHHH
Q 012813 239 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 317 (456)
Q Consensus 239 Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~ 317 (456)
|+.+..-...+..-..++|.|..+|.+.+.++...|+|+|.+|+... +.-..+++.|+++.|+.+|...+..++..|++
T Consensus 222 lcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLR 301 (514)
T KOG0166|consen 222 LCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALR 301 (514)
T ss_pred HHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHh
Confidence 99888532222222247999999999999999999999999999755 55566779999999999999999999999999
Q ss_pred HHHHhccCchhhHHH-HhcCcHHHHHHHHcC-C--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhH
Q 012813 318 AIFNLCITHENKARA-VRDGGVSVILKKIMD-G--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRN 392 (456)
Q Consensus 318 aL~~L~~~~~~~~~~-v~~g~v~~Lv~lL~~-~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 392 (456)
+++|++...+..... ++.|++|.|..++.. + ..+..|++++.|++.+ .+..+++.++|.+|.|+.+|+++. -++
T Consensus 302 aiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~~ 380 (514)
T KOG0166|consen 302 AIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FDI 380 (514)
T ss_pred hccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hHH
Confidence 999999888776665 589999999999984 3 5789999999999986 678899999999999999999875 889
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 012813 393 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 451 (456)
Q Consensus 393 ~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~ 451 (456)
|..|+|++.|++.......-..+.+.|.+++|..|+...+.++...+...|.|+-++.+
T Consensus 381 rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 381 RKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999987664444455567999999999977788899999999999977654
No 8
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.88 E-value=2.5e-23 Score=156.69 Aligned_cols=72 Identities=47% Similarity=0.907 Sum_probs=63.4
Q ss_pred CCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHcC
Q 012813 72 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQG 143 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~~ 143 (456)
+|++|+||||+++|+|||++|+||+|||.+|++|+..++.+||+|+++++..+++||..||..|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999877899999999999999999999999999999874
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.87 E-value=2.3e-21 Score=179.69 Aligned_cols=279 Identities=13% Similarity=0.126 Sum_probs=237.2
Q ss_pred chhhhhHHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHc
Q 012813 160 EADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 238 (456)
Q Consensus 160 ~~~~~~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 238 (456)
..+.+++|.++++|+++ .+++++++|+|.+++.+++.+|..+.+ .|+++.++.+|.+. ..+.....++.++|.|
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~-~galeplL~ll~ss----~~~ismlRn~TWtLSN 227 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQ-CGALEPLLGLLLSS----AIHISMLRNATWTLSN 227 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHh-cCchHHHHHHHHhc----cchHHHHHHhHHHHHH
Confidence 35678999999999765 578899999999999999999999999 99999999999843 2356889999999999
Q ss_pred cccCcc---hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCc-cchhhcccCccHHHHhccccCChhHHHH
Q 012813 239 LSIHDN---NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKD 314 (456)
Q Consensus 239 Ls~~~~---~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~ 314 (456)
|+.+.. +-..+.. ++|.|.+++-+.++++...|+|+|.+|+..+. .-..+.+.|..+.|+++|.+++..++..
T Consensus 228 lcRGknP~P~w~~isq---alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtP 304 (526)
T COG5064 228 LCRGKNPPPDWSNISQ---ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTP 304 (526)
T ss_pred hhCCCCCCCchHHHHH---HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCH
Confidence 998764 3444432 68999999999999999999999999998764 4456778999999999999999999999
Q ss_pred HHHHHHHhccCchhhHHH-HhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCCh
Q 012813 315 VASAIFNLCITHENKARA-VRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCD 390 (456)
Q Consensus 315 a~~aL~~L~~~~~~~~~~-v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~ 390 (456)
|++.++|+....+.+..+ ++.|+++.+-.+|+++ .++..||+.+.|+..+ .+..+++.+.+.+|.|+++|.... -
T Consensus 305 alR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae-~ 383 (526)
T COG5064 305 ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE-Y 383 (526)
T ss_pred HHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH-H
Confidence 999999999887766555 6899999999999986 7899999999999875 678889999999999999999764 7
Q ss_pred hHHHHHHHHHHHHhccCh---hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 391 RNKENCIAILHTICLSDR---TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 391 ~~~~~A~~~L~~l~~~~~---~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
..+..|||++.|...+.. ...+-++ ..|++.+|-.++...+.++-+-+...++|+=+
T Consensus 384 k~kKEACWAisNatsgg~~~PD~iryLv-~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 384 KIKKEACWAISNATSGGLNRPDIIRYLV-SQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHHHHHHHhhhccccCCchHHHHHH-HccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 889999999999987543 4444455 45999999999988877777777888887643
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.84 E-value=1.8e-19 Score=188.67 Aligned_cols=285 Identities=17% Similarity=0.197 Sum_probs=234.5
Q ss_pred hhhhHHHHHHHhcCCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccc---------------------
Q 012813 162 DRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKC--------------------- 220 (456)
Q Consensus 162 ~~~~i~~Lv~~L~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~--------------------- 220 (456)
+...+...++.|..+...+..+...|..|++ +++|-..+.++.-.+.+|.+.|+....
T Consensus 121 ~~~~~d~yiE~lYe~~~ek~~~~~~il~La~-~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~ 199 (708)
T PF05804_consen 121 SINDLDEYIELLYEDIPEKIRGTSLILQLAR-NPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQ 199 (708)
T ss_pred CHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Confidence 3455677788887766778888899999999 677766666646677777777754221
Q ss_pred ------------------c-------------------CCCC---------------------hhhHHHHHHHHHccccC
Q 012813 221 ------------------E-------------------NGIN---------------------PNLQEDVITTLLNLSIH 242 (456)
Q Consensus 221 ------------------~-------------------~~~~---------------------~~~~~~a~~~L~~Ls~~ 242 (456)
+ .... ......+..+|.|++.+
T Consensus 200 fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAed 279 (708)
T PF05804_consen 200 FHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLAED 279 (708)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0000 01222356679999999
Q ss_pred cchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHh
Q 012813 243 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 322 (456)
Q Consensus 243 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L 322 (456)
......+... |+++.|+++|++++.+....++++|.+||...+|+..+.+.|+|+.|++++.+++..+...++++|+||
T Consensus 280 ~~ve~kM~~~-~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NL 358 (708)
T PF05804_consen 280 PRVELKMVNK-GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNL 358 (708)
T ss_pred hHHHHHHHhc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 9999999876 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHH
Q 012813 323 CITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 402 (456)
Q Consensus 323 ~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 402 (456)
|.++++|..|++.|++|.|+.+|.++.....++.+|.+|+.++++|..+...++++.|++++..+.++.++..+++++.|
T Consensus 359 Sfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iN 438 (708)
T PF05804_consen 359 SFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLIN 438 (708)
T ss_pred CcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999988876557777889999999
Q ss_pred HhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhcc
Q 012813 403 ICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNLT 453 (456)
Q Consensus 403 l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~~~ 453 (456)
|+...+.. +.+.+.++++.|++......+.. ...++||++.|+++.
T Consensus 439 La~~~rna--qlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 439 LALNKRNA--QLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPL 484 (708)
T ss_pred HhcCHHHH--HHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchH
Confidence 99987643 44445688888888776554332 346999999998543
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.82 E-value=2.6e-18 Score=180.05 Aligned_cols=255 Identities=20% Similarity=0.221 Sum_probs=219.3
Q ss_pred CCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCC
Q 012813 175 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM 254 (456)
Q Consensus 175 ~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~ 254 (456)
........+...|.|++. +..+...+.+ .|+|+.|+.+|. ..+.+....++.+|.+||...+|+..+.+. |
T Consensus 261 kQeqLlrv~~~lLlNLAe-d~~ve~kM~~-~~iV~~Lv~~Ld------r~n~ellil~v~fLkkLSi~~ENK~~m~~~-g 331 (708)
T PF05804_consen 261 KQEQLLRVAFYLLLNLAE-DPRVELKMVN-KGIVSLLVKCLD------RENEELLILAVTFLKKLSIFKENKDEMAES-G 331 (708)
T ss_pred HHHHHHHHHHHHHHHHhc-ChHHHHHHHh-cCCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHc-C
Confidence 334445567778999999 6788888888 899999999998 457899999999999999999999999987 5
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHh
Q 012813 255 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR 334 (456)
Q Consensus 255 ~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~ 334 (456)
+++.|++++.+++.+.+..+.++|+|||.+++.|..+++.|++|.|+.+|.++ ..+..++.+|++||..+++|..+..
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAY 409 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999865 4567799999999999999999988
Q ss_pred cCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhH
Q 012813 335 DGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKW 411 (456)
Q Consensus 335 ~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~ 411 (456)
.+++|.++++|... .+...+++++.||+.++.+.+.+.+.|+++.|++......++ -...++.|++.+++. .
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~-~ 484 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGP-L 484 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCch-H
Confidence 89999999988753 455668899999999999999999989999999777655422 355799999999854 3
Q ss_pred HHHHHhhccHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Q 012813 412 KAMREEESTHGTISKLAQDG-TARAKRKATGILERLK 447 (456)
Q Consensus 412 ~~~~~~~g~~~~L~~Ll~~~-~~~~k~~A~~~L~~l~ 447 (456)
+..+ .++++.|..++..+ ++...-.+..+|.||.
T Consensus 485 k~~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 485 KELF--VDFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 4555 37889988988775 6678888999999986
No 12
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.74 E-value=2.8e-17 Score=174.81 Aligned_cols=268 Identities=19% Similarity=0.178 Sum_probs=224.3
Q ss_pred hHH-HHHHHHHHHhhcCchhhhhhhccCCchhhhhhcccccc------ccCCCChhhHHHHHHHHHccccCcc-hhHHHh
Q 012813 179 DQT-EAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESK------CENGINPNLQEDVITTLLNLSIHDN-NKKLVA 250 (456)
Q Consensus 179 ~~~-~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~------~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~ 250 (456)
.+. .|+..|..++. +++.|+.+.+ .|++.++-.||.--. ..+..+..++..|..+|.||+.++. ||..+.
T Consensus 313 H~lcaA~~~lMK~SF-DEEhR~aM~E-LG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred hhhHHHHHHHHHhhc-cHHHHHHHHH-hhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 344 78888889998 6999999999 999988888775211 0112235688899999999999996 777887
Q ss_pred cCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC-Ccc-chhhcccCccHHHHhcc-ccCChhHHHHHHHHHHHhccC-c
Q 012813 251 ETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSN-KEVIGKSGALKPLIDLL-DEGHQSAMKDVASAIFNLCIT-H 326 (456)
Q Consensus 251 ~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~-~~~-~~~i~~~G~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~-~ 326 (456)
...|++..+|..|.+...++....+.+|+||+.. |.| +..+.+.|-+..|+..- ...+....+..+.|||||+.+ .
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 7778999999999999999999999999999964 444 55666789999998865 445667889999999999985 4
Q ss_pred hhhHHHHhc-CcHHHHHHHHcCC------chHHHHHHHHHHhhC----CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHH
Q 012813 327 ENKARAVRD-GGVSVILKKIMDG------VHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN 395 (456)
Q Consensus 327 ~~~~~~v~~-g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 395 (456)
+|+..|... |++..|+.+|.-. .+.|.+-++|.|++. +++.|+.+.+++++..|+..|++. +--+--+
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSN 549 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSN 549 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeec
Confidence 899999875 9999999999832 678999999999977 478899999999999999999964 4667889
Q ss_pred HHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 396 CIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 396 A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
+|++||||...++.. ++++...|+++.|..|+++.+..+-+-++.+|+||-.|.
T Consensus 550 aCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred chhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999875 677777899999999999999999999999999997665
No 13
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.5e-17 Score=162.91 Aligned_cols=137 Identities=26% Similarity=0.343 Sum_probs=110.2
Q ss_pred ccccCCCCCC-ChHHHHH----------HHHHHHHHHh-hCCCCCHHHHHHHHHHHHHhh-----------hhHHh--hh
Q 012813 6 IFDSDPTVMP-KATELKK----------ELQKLVRLIV-DDVDYRTETIDQARDTLCALK-----------ELKTK--KR 60 (456)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~~ 60 (456)
+.-+||+.-. ++-+|=+ +-.+|+.||+ |+|+|+.++|..|.+|+.+.. ++..+ ..
T Consensus 758 LkVkdP~~Y~FnaK~LL~~~~~VYinl~~es~FveaVA~D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~ 837 (929)
T COG5113 758 LKVKDPEQYGFNAKNLLRRMVMVYINLRSESKFVEAVASDKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKV 837 (929)
T ss_pred eeecChhhcCCCHHHHHHHHHHHhhhhcchHHHHHHHHcccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHH
Confidence 3445777666 5555422 3478999999 669999999999999999822 22111 11
Q ss_pred h--hhhhhccCCCCCCccccccchhhccCcccCC-CCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHH
Q 012813 61 S--LSLKLHETVSCPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQ 137 (456)
Q Consensus 61 ~--~~~~~~~~~~~p~~f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~ 137 (456)
+ ...++++.+++|++|++|++..+|+|||++| +|.+.||++|..|+.+ +.++||+|.|++.++++||.+||+.|-.
T Consensus 838 r~~ea~EeED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~ 916 (929)
T COG5113 838 RVIEAVEEEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINR 916 (929)
T ss_pred HHHHhhhhhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHH
Confidence 1 2234457899999999999999999999999 7899999999999998 6899999999999999999999999999
Q ss_pred HHHHcC
Q 012813 138 WCRSQG 143 (456)
Q Consensus 138 w~~~~~ 143 (456)
|...++
T Consensus 917 f~k~k~ 922 (929)
T COG5113 917 FYKCKG 922 (929)
T ss_pred HHhccc
Confidence 876554
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.9e-15 Score=140.53 Aligned_cols=280 Identities=17% Similarity=0.240 Sum_probs=230.0
Q ss_pred hhHHHHHHHhc---CCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 164 DHFLSLLKKMS---ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 164 ~~i~~Lv~~L~---~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
.+...++..|. ++.+.-...+..++.-|..++.||+.|.+ .++.+.+...|.... ...+..++.+++..|.
T Consensus 145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~-~~il~Li~~~l~~~g-----k~~~VRel~~a~r~l~ 218 (461)
T KOG4199|consen 145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFME-LKILELILQVLNREG-----KTRTVRELYDAIRALL 218 (461)
T ss_pred ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHH-hhHHHHHHHHHcccC-----ccHHHHHHHHHHHHhc
Confidence 34556677773 23455667778888888889999999999 999999998887432 2367788899999887
Q ss_pred cCcch----------hHHHhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCC-
Q 012813 241 IHDNN----------KKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGH- 308 (456)
Q Consensus 241 ~~~~~----------~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~- 308 (456)
.+++. .+.|+..+ .+..|++.|+.+ ++........+|..|+..++.+..|.+.|++..|+.++.+.+
T Consensus 219 ~dDDiRV~fg~ah~hAr~ia~e~-~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~ 297 (461)
T KOG4199|consen 219 TDDDIRVVFGQAHGHARTIAKEG-ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNE 297 (461)
T ss_pred CCCceeeecchhhHHHHHHHHhh-hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhch
Confidence 77763 44556554 678899999987 688999999999999999999999999999999999998742
Q ss_pred ---hhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc----CCchHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHH
Q 012813 309 ---QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM----DGVHVDELLAILAMLST-NHRAVEEIGDLGGVSCM 380 (456)
Q Consensus 309 ---~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~----~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~L 380 (456)
..+.+.++..|+.|+.++.++..+|+.|+.+.++.++. ++.+.+.++.++.-||- .|++...+++.|+-...
T Consensus 298 ~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~a 377 (461)
T KOG4199|consen 298 QGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLA 377 (461)
T ss_pred hhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHH
Confidence 34567889999999999999999999999999998875 34788899999999997 58888899999999999
Q ss_pred HHHhhhc-CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhc
Q 012813 381 LRIIRES-TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 452 (456)
Q Consensus 381 v~ll~~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~~ 452 (456)
|+.|+.. .-..+|++|++++.|+..++.+.+..++ ..+++.|+.......+.....|..+||-|.=+..+
T Consensus 378 vqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l--~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~l 448 (461)
T KOG4199|consen 378 VQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL--ANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYL 448 (461)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH--hccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhh
Confidence 9999863 1256799999999999999987765665 48889999988888888888899999988654443
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=3e-15 Score=139.22 Aligned_cols=263 Identities=18% Similarity=0.263 Sum_probs=210.8
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc-chhHHHhcCCCC
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD-NNKKLVAETPMV 255 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~~ 255 (456)
...-.+++..|..+....+.. .+ +.+...++.+|... .++.++.......+..-+... .||+.+++. ++
T Consensus 121 ~~~l~ksL~al~~lt~~qpdl----~d-a~g~~vvv~lL~~~----~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~-~i 190 (461)
T KOG4199|consen 121 ESVLKKSLEAINSLTHKQPDL----FD-AEAMAVVLKLLALK----VESEEVTLLTLQWLQKACIMHEVNRQLFMEL-KI 190 (461)
T ss_pred hhHHHHHHHHHHHhhcCCcch----hc-cccHHHHHHHHhcc----cchHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hH
Confidence 445667888888777755443 44 67888899998744 346777777788887776555 589999987 48
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHhccCCccchhhc----------ccCccHHHHhccccC-ChhHHHHHHHHHHHhc
Q 012813 256 IPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIG----------KSGALKPLIDLLDEG-HQSAMKDVASAIFNLC 323 (456)
Q Consensus 256 i~~Lv~lL~-~~~~~~~~~aa~aL~~Ls~~~~~~~~i~----------~~G~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~ 323 (456)
.|.+...|. .|...+.+...++++-|...++.|..++ ..|++..|++.|..+ ++.....++.+|..|+
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 898886665 4556788899999999999888765544 467889999999875 7889999999999999
Q ss_pred cCchhhHHHHhcCcHHHHHHHHcCC------chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhh-hcCChhHHHHH
Q 012813 324 ITHENKARAVRDGGVSVILKKIMDG------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR-ESTCDRNKENC 396 (456)
Q Consensus 324 ~~~~~~~~~v~~g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~A 396 (456)
..++.+..+++.|++..|++.+.+. .....++..|..|+.+..++..+++.||.+.++.++. ..++|.+.+.+
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999999999873 3567799999999999999999999999999996655 45679999999
Q ss_pred HHHHHHHhccChhhHHHHHHhhccHHHHHHHhh-cC-CHHHHHHHHHHHHHHhcch
Q 012813 397 IAILHTICLSDRTKWKAMREEESTHGTISKLAQ-DG-TARAKRKATGILERLKRTV 450 (456)
Q Consensus 397 ~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~-~~-~~~~k~~A~~~L~~l~~~~ 450 (456)
+.++.-||-+.+++...+++. |+....++-+. .. ...++++|++.+||+-.+.
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~-G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEA-GAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhc-chHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999887777765 55555555444 33 3358999999999996543
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.69 E-value=3.9e-16 Score=160.32 Aligned_cols=279 Identities=22% Similarity=0.218 Sum_probs=221.1
Q ss_pred hhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 164 DHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 164 ~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
-.+++.+.+|.+ ....|-.|...|..+|..+.+.+..+.+ .|+|+.||.+|. +...+++.+|+++|.||...
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrq-lggI~kLv~Ll~------~~~~evq~~acgaLRNLvf~ 305 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQ-LGGIPKLVALLD------HRNDEVQRQACGALRNLVFG 305 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHH-hccHHHHHHHhc------CCcHHHHHHHHHHHHhhhcc
Confidence 356788899965 4678899999999999999999999999 999999999999 67899999999999999765
Q ss_pred c---chhHHHhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcccc------------
Q 012813 243 D---NNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE------------ 306 (456)
Q Consensus 243 ~---~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~------------ 306 (456)
. +|+..|.+.+ .+|.++++|+. ++.++++..+++|+||+..|..|..|+.. ++..|..-+-.
T Consensus 306 ~~~~~NKlai~~~~-Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~ 383 (717)
T KOG1048|consen 306 KSTDSNKLAIKELN-GVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPR 383 (717)
T ss_pred cCCcccchhhhhcC-ChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccc
Confidence 5 3778888775 68999999997 68999999999999999998888777754 45555554321
Q ss_pred --CChhHHHHHHHHHHHhcc-CchhhHHHHhc-CcHHHHHHHHcC--------CchHHHHHHHHHHhhCCHH--------
Q 012813 307 --GHQSAMKDVASAIFNLCI-THENKARAVRD-GGVSVILKKIMD--------GVHVDELLAILAMLSTNHR-------- 366 (456)
Q Consensus 307 --~~~~~~~~a~~aL~~L~~-~~~~~~~~v~~-g~v~~Lv~lL~~--------~~~~~~a~~~L~~L~~~~~-------- 366 (456)
.+..+..++..+|+|++. ..+.|.+|.+. |.|..|+-.++. ...+|.|+.+|.||+..-+
T Consensus 384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~ 463 (717)
T KOG1048|consen 384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR 463 (717)
T ss_pred ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence 135678899999999998 67899999875 889999998862 2679999999999985211
Q ss_pred -------------------------HHH---------------------HHHhhCcHHHHHHHhhhcCChhHHHHHHHHH
Q 012813 367 -------------------------AVE---------------------EIGDLGGVSCMLRIIRESTCDRNKENCIAIL 400 (456)
Q Consensus 367 -------------------------~~~---------------------~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L 400 (456)
.++ .+...-+|..-+.+|.....+.+.|.++.+|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL 543 (717)
T KOG1048|consen 464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL 543 (717)
T ss_pred hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence 001 0111113444455666555689999999999
Q ss_pred HHHhccCh----hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 012813 401 HTICLSDR----TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 451 (456)
Q Consensus 401 ~~l~~~~~----~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~ 451 (456)
.||+.... ..+..++..+.+.++|++|++.+++++.+.++.+|+||+...-
T Consensus 544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r 598 (717)
T KOG1048|consen 544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR 598 (717)
T ss_pred hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch
Confidence 99998754 2334454667899999999999999999999999999986543
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.69 E-value=2.5e-17 Score=121.10 Aligned_cols=63 Identities=49% Similarity=0.887 Sum_probs=60.4
Q ss_pred ccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHH
Q 012813 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQW 138 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w 138 (456)
+|.||||+++|+|||++||||+|||++|.+|+.. +.+||+|+++++..++++|..+|+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 67999999999999999999999999988
No 18
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=8.5e-17 Score=169.32 Aligned_cols=118 Identities=29% Similarity=0.422 Sum_probs=100.0
Q ss_pred HHHHHHHHh-hCCCCCHHHHHHHHHHHHH--hhhh---------H--Hh--hhhhhhhhccCCCCCCccccccchhhccC
Q 012813 24 LQKLVRLIV-DDVDYRTETIDQARDTLCA--LKEL---------K--TK--KRSLSLKLHETVSCPEEFKCPLSKELMRD 87 (456)
Q Consensus 24 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~---------~--~~--~~~~~~~~~~~~~~p~~f~Cpi~~~~m~d 87 (456)
...|.++|+ |+|+|++++|..|..+++| +++. . .+ .......+++..++|++|.+|++..+|+|
T Consensus 803 ~~~F~~avA~D~RSys~~lF~~a~~~~~k~~l~~~~~Ie~~s~la~~~~~~~~~~~~eee~l~dvpdef~DPlm~Tlm~d 882 (943)
T KOG2042|consen 803 EPSFVEAVAKDGRSYSEELFNHAISILRKRILKSSRQIEEFSELAERVEATASIDAEEEEELGDVPDEFLDPLMSTLMSD 882 (943)
T ss_pred chhHHHHHhccccccCHHHHhhhHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhCccccccCCC
Confidence 788999998 6699999999999999944 2211 0 00 11223344577889999999999999999
Q ss_pred cccCC-CCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHc
Q 012813 88 PVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQ 142 (456)
Q Consensus 88 Pv~l~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~ 142 (456)
||++| +|++.||+.|++|+.+ +.++||||+||+.++++||.+||..|+.|..++
T Consensus 883 PV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 883 PVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred CccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 99999 8999999999999998 789999999999999999999999999998765
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.55 E-value=5e-13 Score=125.08 Aligned_cols=224 Identities=19% Similarity=0.196 Sum_probs=179.4
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 284 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~ 284 (456)
++-+..|+.+|.. +.|+.+++.+..++.+.+..+.++..+.+.| +++.+..+|.++++.++..|..+|.|++..
T Consensus 11 ~~~l~~Ll~lL~~-----t~dp~i~e~al~al~n~aaf~~nq~~Ir~~G-gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 11 AQELQKLLCLLES-----TEDPFIQEKALIALGNSAAFPFNQDIIRDLG-GISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred HHHHHHHHHHHhc-----CCChHHHHHHHHHHHhhccChhHHHHHHHcC-CHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 5778899999985 4589999999999999999999999998875 799999999999999999999999999999
Q ss_pred CccchhhcccCccHHHHhccccC--ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHH
Q 012813 285 DSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 360 (456)
Q Consensus 285 ~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~ 360 (456)
.+|+..|-. .++.+++.+.+. +..++..++++|.||+..++.+..+. +.++.++.+|..+ ..+..++.+|.+
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999888753 356666644443 67889999999999998887776664 3799999999876 678899999999
Q ss_pred hhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChh-------------hHHHHHHhhc-cHHHHHH
Q 012813 361 LSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-------------KWKAMREEES-THGTISK 426 (456)
Q Consensus 361 L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~-------------~~~~~~~~~g-~~~~L~~ 426 (456)
|+.++.....+..+.+...++.++....+...-..++....||..+-.. ..-.++.+.+ ....|..
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 9999999999999999999999998765577788899999999654221 1112222222 4455666
Q ss_pred HhhcCCHHHHHH
Q 012813 427 LAQDGTARAKRK 438 (456)
Q Consensus 427 Ll~~~~~~~k~~ 438 (456)
|..+.++++|++
T Consensus 241 l~~h~d~ev~~~ 252 (254)
T PF04826_consen 241 LANHPDPEVKEQ 252 (254)
T ss_pred HHcCCCHHHhhh
Confidence 666666666655
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.54 E-value=1.7e-13 Score=141.09 Aligned_cols=285 Identities=17% Similarity=0.174 Sum_probs=223.2
Q ss_pred hhhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCch--hhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHH
Q 012813 161 ADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPS--FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 237 (456)
Q Consensus 161 ~~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~--~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 237 (456)
-..+.|+.||..|.+ +.++|..|.++|+||..++.. |+-.|.+ .++|+.++++|+. ..|.++++.+..+|.
T Consensus 272 rqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~-~~Gv~~l~~~Lr~-----t~D~ev~e~iTg~LW 345 (717)
T KOG1048|consen 272 RQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKE-LNGVPTLVRLLRH-----TQDDEVRELITGILW 345 (717)
T ss_pred HHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhh-cCChHHHHHHHHh-----hcchHHHHHHHHHHh
Confidence 346789999999965 478999999999999987666 8888999 9999999999995 358899999999999
Q ss_pred ccccCcchhHHHhcCCCCHHHHHHHHhcC--------------CHHHHHHHHHHHHHhcc-CCccchhhcc-cCccHHHH
Q 012813 238 NLSIHDNNKKLVAETPMVIPLLMDALRSG--------------TIETRSNAAAALFTLSA-LDSNKEVIGK-SGALKPLI 301 (456)
Q Consensus 238 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~--------------~~~~~~~aa~aL~~Ls~-~~~~~~~i~~-~G~i~~Lv 301 (456)
||+.+|..+..++.. .+..|.+-+-.+ ..++-.+++++|+|++. ..+.+..+.+ .|.|..|+
T Consensus 346 NLSS~D~lK~~ii~~--al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~ 423 (717)
T KOG1048|consen 346 NLSSNDALKMLIITS--ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALL 423 (717)
T ss_pred cccchhHHHHHHHHH--HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHH
Confidence 999998888888765 577666554211 14577889999999987 5677888876 48888888
Q ss_pred hcccc------CChhHHHHHHHHHH-------------------------------------------------------
Q 012813 302 DLLDE------GHQSAMKDVASAIF------------------------------------------------------- 320 (456)
Q Consensus 302 ~lL~~------~~~~~~~~a~~aL~------------------------------------------------------- 320 (456)
..+.. .+....++++..|+
T Consensus 424 ~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe 503 (717)
T KOG1048|consen 424 FSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPE 503 (717)
T ss_pred HHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcc
Confidence 76642 13334444444444
Q ss_pred -----------------------------------------HhccCch-----hhHHH-HhcCcHHHHHHHHcCC--chH
Q 012813 321 -----------------------------------------NLCITHE-----NKARA-VRDGGVSVILKKIMDG--VHV 351 (456)
Q Consensus 321 -----------------------------------------~L~~~~~-----~~~~~-v~~g~v~~Lv~lL~~~--~~~ 351 (456)
||+.... .+..+ ....+.|+|+++|..+ .++
T Consensus 504 ~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv 583 (717)
T KOG1048|consen 504 RATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVV 583 (717)
T ss_pred cccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHH
Confidence 4443321 22223 3456778999999854 788
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCC-----hhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHH
Q 012813 352 DELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC-----DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK 426 (456)
Q Consensus 352 ~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ 426 (456)
..++.+|.||+.+..++..|. .++++.||+.|..+.+ +.+-..++.+|+++...+....+.+++ .++++.|+.
T Consensus 584 ~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~-~~g~~kL~~ 661 (717)
T KOG1048|consen 584 RSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLE-IKGIPKLRL 661 (717)
T ss_pred HHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHh-ccChHHHHH
Confidence 999999999999999998887 6689999999987543 678888999999999888888788886 589999999
Q ss_pred HhhcC-CHHHHHHHHHHHHHHhcchhccCC
Q 012813 427 LAQDG-TARAKRKATGILERLKRTVNLTHT 455 (456)
Q Consensus 427 Ll~~~-~~~~k~~A~~~L~~l~~~~~~~~~ 455 (456)
|..+. +++.-+.|+.+|..|-.+.++++.
T Consensus 662 I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~ 691 (717)
T KOG1048|consen 662 ISKSQHSPKEFKAASSVLDVLWQYKELHFK 691 (717)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 87664 778999999999999888877753
No 21
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=1.1e-12 Score=122.88 Aligned_cols=190 Identities=18% Similarity=0.240 Sum_probs=165.8
Q ss_pred hhhhHHHHHHHhcC--CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcc
Q 012813 162 DRDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 239 (456)
Q Consensus 162 ~~~~i~~Lv~~L~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L 239 (456)
+.+.++.|+..|+. ++..++.++..+.+.+. .+.++..+.+ .|+++.+..+|. +.++.+++.|+.+|.|+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~-~Ggi~lI~~lL~------~p~~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRD-LGGISLIGSLLN------DPNPSVREKALNALNNL 81 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHH-cCCHHHHHHHcC------CCChHHHHHHHHHHHhc
Confidence 46788999999964 47789999999999877 6899999999 999999999999 66899999999999999
Q ss_pred ccCcchhHHHhcCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHH
Q 012813 240 SIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 317 (456)
Q Consensus 240 s~~~~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~ 317 (456)
+.+.+++..+-. .++.+.+.+.+. +.+++.++.++|.+|+..+++...+.. .++.++.+|.+++..++..+++
T Consensus 82 s~~~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 82 SVNDENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred CCChhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHH
Confidence 999999887753 577777765554 678999999999999998888777754 6999999999999999999999
Q ss_pred HHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCC
Q 012813 318 AIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN 364 (456)
Q Consensus 318 aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~ 364 (456)
+|.|||.++.+...++.+.+++.++.++... +....++.++.|+..+
T Consensus 157 ~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 157 VLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999854 5677788888898764
No 22
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.37 E-value=5.4e-12 Score=135.41 Aligned_cols=226 Identities=20% Similarity=0.160 Sum_probs=183.2
Q ss_pred hhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc-hhHHHhcCCCCH
Q 012813 178 PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVI 256 (456)
Q Consensus 178 ~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~~i 256 (456)
..++.|..+|.||+.++..|+..+....|+++.+|..|. +...++..-.+.+|+||+=..+ |-+.+...-|-+
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~------s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsV 439 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLI------SAPEELLQVYASVLRNLSWRADSNMKKVLRETGSV 439 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHh------cChHHHHHHHHHHHHhccccccccHHHHHHhhhhH
Confidence 357789999999999988898888766899999999998 3345788888899999986554 544444444566
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHHHhccC-Cccchhhcc-cCccHHHHhccccC----ChhHHHHHHHHHHHhccC----
Q 012813 257 PLLMDA-LRSGTIETRSNAAAALFTLSAL-DSNKEVIGK-SGALKPLIDLLDEG----HQSAMKDVASAIFNLCIT---- 325 (456)
Q Consensus 257 ~~Lv~l-L~~~~~~~~~~aa~aL~~Ls~~-~~~~~~i~~-~G~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~---- 325 (456)
..|+.. |+.......+..+.+|+||+.+ .+||..|.. .|++.+||.+|.-. .....+.|-.+|.|.+..
T Consensus 440 taLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~ 519 (2195)
T KOG2122|consen 440 TALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATC 519 (2195)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhcc
Confidence 667654 4555667888999999999985 489998876 59999999999753 456788899999988753
Q ss_pred chhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHH
Q 012813 326 HENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 402 (456)
Q Consensus 326 ~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 402 (456)
.+-|+.+.+.+++..|+..|.+. .++.++|++||||+. +++.++.+++.|+|+.|..++.+.+ ...-+-++.+|.|
T Consensus 520 E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKh-kMIa~GSaaALrN 598 (2195)
T KOG2122|consen 520 EDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKH-KMIAMGSAAALRN 598 (2195)
T ss_pred chHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhh-hhhhhhHHHHHHH
Confidence 45566667889999999999987 678999999999976 6889999999999999999999765 6777888899999
Q ss_pred HhccChhh
Q 012813 403 ICLSDRTK 410 (456)
Q Consensus 403 l~~~~~~~ 410 (456)
|-.+-+.+
T Consensus 599 Lln~RPAk 606 (2195)
T KOG2122|consen 599 LLNFRPAK 606 (2195)
T ss_pred HhcCCchh
Confidence 98876543
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.3e-11 Score=118.37 Aligned_cols=219 Identities=18% Similarity=0.198 Sum_probs=182.7
Q ss_pred hHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccC
Q 012813 228 LQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG 307 (456)
Q Consensus 228 ~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~ 307 (456)
...-|+-.|.||+.+-..-..+... ..+..||+.|...+.+........|..|+..++|+..+++.|.|+.|++++...
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrk-niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRK-NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH-hHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 3445677888998877655566655 378889999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhc
Q 012813 308 HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES 387 (456)
Q Consensus 308 ~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~ 387 (456)
+++++...+..|.||+.+..++.+|+..|.+|.|..+|.+..-..-|+.+|..++.+.+.+..+....+|+.+.+.+-.+
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~ 437 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSG 437 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998888889999999999999999998889999999887776
Q ss_pred CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh-hcCCHHHHHHHHHHHHHHhcchhcc
Q 012813 388 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA-QDGTARAKRKATGILERLKRTVNLT 453 (456)
Q Consensus 388 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll-~~~~~~~k~~A~~~L~~l~~~~~~~ 453 (456)
.+.++...-+....|||.+.++. +++.+..++..|++-. ...++- -..++||++.|..++
T Consensus 438 ~~~~vdl~lia~ciNl~lnkRNa--QlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~t 498 (791)
T KOG1222|consen 438 TGSEVDLALIALCINLCLNKRNA--QLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGAT 498 (791)
T ss_pred CCceecHHHHHHHHHHHhccccc--eEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchH
Confidence 55677776777778999877654 5565666777777753 333322 245778888887654
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.31 E-value=8.1e-10 Score=114.63 Aligned_cols=271 Identities=14% Similarity=0.156 Sum_probs=209.7
Q ss_pred HHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhH
Q 012813 169 LLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKK 247 (456)
Q Consensus 169 Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~ 247 (456)
+...|..+ .+....+...|..+... ...... . .+..+.|...|. +.++.++..++..|.++..+.+...
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~-~~~~~l--~-~~~~~~L~~gL~------h~~~~Vr~l~l~~l~~~~~~~~~~~ 112 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSA-LSPDSL--L-PQYQPFLQRGLT------HPSPKVRRLALKQLGRIARHSEGAA 112 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhc-cCHHHH--H-HHHHHHHHHHhc------CCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 55566544 33334455556655552 233322 2 467788888888 6689999999999999998887767
Q ss_pred HHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCch
Q 012813 248 LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE 327 (456)
Q Consensus 248 ~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 327 (456)
.++...++++.++..|.+++.++...|+.+|.+|+........+...+.+..|..++...+..++..+..++.+++...+
T Consensus 113 ~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH
Confidence 77766789999999999999999999999999999988777778888889999999988788889999999999987655
Q ss_pred -hhHHHHhcCcHHHHHHHHcCCc--hHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChh-----HHHHHHHH
Q 012813 328 -NKARAVRDGGVSVILKKIMDGV--HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR-----NKENCIAI 399 (456)
Q Consensus 328 -~~~~~v~~g~v~~Lv~lL~~~~--~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-----~~~~A~~~ 399 (456)
....+.+.|.++.+++.|.+++ ++..++.+|..|+..+.+.+.+.+.|+++.|+.++.....+. .--..+..
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 4555567899999999999774 588899999999999999999999999999999998642222 11223356
Q ss_pred HHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 012813 400 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 451 (456)
Q Consensus 400 L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~ 451 (456)
..+++...+....... ..+++.|..+++++++..+..|...+..++...+
T Consensus 273 ~g~la~~~~~~v~~~~--p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY--PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred HHHHHhcChHHHHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 6667775554433322 4677777788888999999999999999876543
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.27 E-value=1.7e-09 Score=112.22 Aligned_cols=274 Identities=14% Similarity=0.145 Sum_probs=207.2
Q ss_pred hhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 164 DHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 164 ~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
...+.|...|.+ ++.++..+++.|.++..++......+.+ .+.++.++..+. +++.++...|+.+|.+++.+
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~-~~l~~~i~~~L~------~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD-NELLPLIIQCLR------DPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC-ccHHHHHHHHHc------CCcHHHHHHHHHHHHHHhCC
Confidence 345566666754 4678889999999999876666666777 899999999998 67899999999999999998
Q ss_pred cchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC-CccchhhcccCccHHHHhccccCChhHHHHHHHHHHH
Q 012813 243 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 321 (456)
Q Consensus 243 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~ 321 (456)
+.....+...+ .++.|..++...+..+|..+..++.+++.. ++....+.+.|+++.+++.|+++|.-++.+|+.+|..
T Consensus 150 ~~~~~~l~~~~-~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~ 228 (503)
T PF10508_consen 150 PEGLEQLFDSN-LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSE 228 (503)
T ss_pred chhHHHHhCcc-hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 88777777654 688899999887888888899999999864 5667777789999999999999888899999999999
Q ss_pred hccCchhhHHHHhcCcHHHHHHHHcCC---c-----hHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhH
Q 012813 322 LCITHENKARAVRDGGVSVILKKIMDG---V-----HVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRN 392 (456)
Q Consensus 322 L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~-----~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 392 (456)
|+..+.+...+.+.|+++.|..++.+. . ..-..+....+++.. +...... -...+..|..++.+. ++..
T Consensus 229 La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~-~p~~~~~l~~~~~s~-d~~~ 306 (503)
T PF10508_consen 229 LAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL-YPAFLERLFSMLESQ-DPTI 306 (503)
T ss_pred HHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH-HHHHHHHHHHHhCCC-ChhH
Confidence 999999999999999999999999743 2 223344666677763 3211110 012344555555544 4888
Q ss_pred HHHHHHHHHHHhccChhhHHHH-HHhhccHHH----HHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 393 KENCIAILHTICLSDRTKWKAM-REEESTHGT----ISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 393 ~~~A~~~L~~l~~~~~~~~~~~-~~~~g~~~~----L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
+..|..++..|+....++ ..+ ....+.+.. +.....++..++|-++...|.++=.
T Consensus 307 ~~~A~dtlg~igst~~G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 307 REVAFDTLGQIGSTVEGK-QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHHHHHHHhCCHHHH-HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 999999999999876553 223 232233333 3333566778899999999998843
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.23 E-value=1.2e-10 Score=96.53 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=103.1
Q ss_pred hhcccCccHHHHhccccCChhHHHHHHHHHHHhccC-chhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH-
Q 012813 290 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT-HENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH- 365 (456)
Q Consensus 290 ~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~-~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~- 365 (456)
.+.+.|+++.|+++|.+++..++..++++|.+++.. ++.+..+++.|+++.|+++|.++ .++..++++|.+|+.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356789999999999999999999999999999987 67888888999999999999975 78999999999999975
Q ss_pred HHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhc
Q 012813 366 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 405 (456)
Q Consensus 366 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 405 (456)
..+..+.+.|+++.|++++... +..+++.|+++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 5677778899999999999976 48999999999999873
No 27
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=7.9e-10 Score=107.81 Aligned_cols=266 Identities=19% Similarity=0.209 Sum_probs=203.5
Q ss_pred hhHHHHHHHhcC----CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcc
Q 012813 164 DHFLSLLKKMSA----TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 239 (456)
Q Consensus 164 ~~i~~Lv~~L~~----~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L 239 (456)
..+..+.+.++. .+...+-|+..|.+++. +-.....+.. .+.|..||..|.. .+.+...-....|..|
T Consensus 260 ~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrr-kniV~mLVKaLdr------~n~~Ll~lv~~FLkKL 331 (791)
T KOG1222|consen 260 EEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRR-KNIVAMLVKALDR------SNSSLLTLVIKFLKKL 331 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHH-HhHHHHHHHHHcc------cchHHHHHHHHHHHHh
Confidence 344555555543 23334557777889888 4555555666 6899999999983 4578888899999999
Q ss_pred ccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHH
Q 012813 240 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 319 (456)
Q Consensus 240 s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL 319 (456)
|..++|+..+... |.+..|++++....++.+......|+||+.+..++.+++..|.+|.|+.+|.+++. ...|+..|
T Consensus 332 SIf~eNK~~M~~~-~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~l 408 (791)
T KOG1222|consen 332 SIFDENKIVMEQN-GIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNML 408 (791)
T ss_pred hhhccchHHHHhc-cHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhh
Confidence 9999999999876 58999999999999999999999999999999999999999999999999987643 45689999
Q ss_pred HHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHH
Q 012813 320 FNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 396 (456)
Q Consensus 320 ~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 396 (456)
+.++.++..+..+....+|+.+++.+-++ .+.-..++.-.|||.+..+.+.+++..++..|.+..-...++ --
T Consensus 409 Yh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~----lL 484 (791)
T KOG1222|consen 409 YHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL----LL 484 (791)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccch----HH
Confidence 99999999999888889999999988765 233333333368888888888888876788877554444323 34
Q ss_pred HHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCH-HHHHHHHHHHHHHh
Q 012813 397 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA-RAKRKATGILERLK 447 (456)
Q Consensus 397 ~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~-~~k~~A~~~L~~l~ 447 (456)
..++.|++.+.......++ ..++-|..++...++ .---.+..+|.||.
T Consensus 485 mK~vRniSqHeg~tqn~Fi---dyvgdLa~i~~nd~~E~F~~EClGtlanL~ 533 (791)
T KOG1222|consen 485 MKVVRNISQHEGATQNMFI---DYVGDLAGIAKNDNSESFGLECLGTLANLK 533 (791)
T ss_pred HHHHHHhhhccchHHHHHH---HHHHHHHHHhhcCchHHHHHHHHHHHhhcc
Confidence 6788899998865433444 788888888876644 34455566666654
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.21 E-value=4e-10 Score=93.37 Aligned_cols=115 Identities=14% Similarity=0.260 Sum_probs=102.3
Q ss_pred HHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccC
Q 012813 331 RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 331 ~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 407 (456)
.+++.|+++.|+++|.++ ..++.++.+|.+++.. ++.+..+.+.|+++.++.+|.++ ++.++..|+++|++|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence 467889999999999976 7889999999999997 88999999999999999999975 5999999999999999988
Q ss_pred hhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 408 RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 408 ~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
+... ..+...|+++.|.++++.++..+++.|.++|.+++
T Consensus 81 ~~~~-~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNK-LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHH-HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 6543 44445699999999999999999999999999986
No 29
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.12 E-value=2.2e-09 Score=104.90 Aligned_cols=232 Identities=16% Similarity=0.108 Sum_probs=163.3
Q ss_pred CchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcC------CCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 012813 206 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET------PMVIPLLMDALRSGTIETRSNAAAALF 279 (456)
Q Consensus 206 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~------~~~i~~Lv~lL~~~~~~~~~~aa~aL~ 279 (456)
+....++++|+.. +.+.++...++..+..+-.++..+..++.. +.....+++++.+++.-++..++..|.
T Consensus 55 ~~~~~~l~lL~~~----~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt 130 (312)
T PF03224_consen 55 QYASLFLNLLNKL----SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILT 130 (312)
T ss_dssp -------HHHHHH-------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc----cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3466777777753 136888999999998887666544433321 124566888899999999999999999
Q ss_pred HhccCCccchhhcccCccHHHHhcccc----CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHH------cCC-
Q 012813 280 TLSALDSNKEVIGKSGALKPLIDLLDE----GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKI------MDG- 348 (456)
Q Consensus 280 ~Ls~~~~~~~~i~~~G~i~~Lv~lL~~----~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL------~~~- 348 (456)
.|....+....-...+.++.+++.|.+ .+.+....|+.+|.+|...++.|..+.+.|+++.|+.++ .+.
T Consensus 131 ~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~ 210 (312)
T PF03224_consen 131 SLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSS 210 (312)
T ss_dssp HHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------
T ss_pred HHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCC
Confidence 998766544443335667777777765 355677899999999999999999999999999999999 222
Q ss_pred --chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChh-hHHHHHHhhccHHHHH
Q 012813 349 --VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-KWKAMREEESTHGTIS 425 (456)
Q Consensus 349 --~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~~~~~g~~~~L~ 425 (456)
.++.+++-++|.|+.+++..+.+.+.+.|+.|+++++...-+++.+-++++|.|+....+. ....++ ..++.+.+.
T Consensus 211 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv-~~~~l~~l~ 289 (312)
T PF03224_consen 211 GIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMV-LCGLLKTLQ 289 (312)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHH-HH-HHHHHH
T ss_pred chhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHH-HccHHHHHH
Confidence 5688899999999999999999999999999999999876689999999999999998775 334444 457777777
Q ss_pred HHhhc--CCHHHHHHHHHH
Q 012813 426 KLAQD--GTARAKRKATGI 442 (456)
Q Consensus 426 ~Ll~~--~~~~~k~~A~~~ 442 (456)
.|... +++++.+--..+
T Consensus 290 ~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 290 NLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHSS--SSHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH
Confidence 77654 377776654443
No 30
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.09 E-value=1.9e-08 Score=97.17 Aligned_cols=285 Identities=12% Similarity=0.065 Sum_probs=203.8
Q ss_pred hhhHHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCC-CChhhHHHHHHHHHccc
Q 012813 163 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENG-INPNLQEDVITTLLNLS 240 (456)
Q Consensus 163 ~~~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~-~~~~~~~~a~~~L~~Ls 240 (456)
.+.++.|.+..+|. .++..+.-+.|.|+|-.+.++|..|.+ .|+-..+++.|+.....+. .+.+...-+...|.|..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~-lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFN-LGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHh-cCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 56677777777654 677788899999999999999999999 9998888888876653111 12455666777888887
Q ss_pred cCcc-hhHHHhcCCCCHHHHHHHHhcC----------------------------------------------CHHHHHH
Q 012813 241 IHDN-NKKLVAETPMVIPLLMDALRSG----------------------------------------------TIETRSN 273 (456)
Q Consensus 241 ~~~~-~~~~i~~~~~~i~~Lv~lL~~~----------------------------------------------~~~~~~~ 273 (456)
.+.+ .+.+.++. |+++.|...+.-+ .+..++-
T Consensus 165 l~~~~l~aq~~~~-gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM 243 (604)
T KOG4500|consen 165 LDSRELRAQVADA-GVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM 243 (604)
T ss_pred CCcHHHHHHHHhc-ccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence 6665 67777776 4888655444211 1122333
Q ss_pred HHHHHHHhccCCccchhhcccCccHHHHhccccC--------ChhHHHHHHHHHHHhccCchhhHHHHhcC-cHHHHHHH
Q 012813 274 AAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG--------HQSAMKDVASAIFNLCITHENKARAVRDG-GVSVILKK 344 (456)
Q Consensus 274 aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~--------~~~~~~~a~~aL~~L~~~~~~~~~~v~~g-~v~~Lv~l 344 (456)
....|...+.++.-+..+.+.|.++-++++++.- .....+.++....-|...++.-..+...+ .+..++.-
T Consensus 244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence 3444455555566677777789999998888761 12234455555556666666656565554 56667777
Q ss_pred HcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhh----cCChhHHHHHHHHHHHHhccChhhHHHHHHhh
Q 012813 345 IMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE----STCDRNKENCIAILHTICLSDRTKWKAMREEE 418 (456)
Q Consensus 345 L~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~ 418 (456)
+.+. +...-+.-++.|+++..+....+++.|.+..|++++.. +++-+.+-.++.+|+|+.---+++ ..+..+
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk--a~~~~a 401 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK--AHFAPA 401 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch--hhcccc
Confidence 7654 56666777889999999999999999999999988775 223566788999999998855554 344457
Q ss_pred ccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 012813 419 STHGTISKLAQDGTARAKRKATGILERLKRTVN 451 (456)
Q Consensus 419 g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~ 451 (456)
|..+.+...+....|++..+-...||++...++
T Consensus 402 GvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 402 GVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred chHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 999999999999999998888888888876544
No 31
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.4e-10 Score=103.91 Aligned_cols=78 Identities=29% Similarity=0.431 Sum_probs=72.8
Q ss_pred cCCCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHcCCC
Q 012813 68 ETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGIE 145 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~~~~ 145 (456)
...++|+.++|-|+.++|+|||+.|+|.||+|.-|.+|+..-...+|+|+.+++...++||..++..|..|...+.+.
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 456799999999999999999999999999999999999876678999999999999999999999999999988654
No 32
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.03 E-value=1.3e-10 Score=101.83 Aligned_cols=63 Identities=29% Similarity=0.540 Sum_probs=54.2
Q ss_pred cCCCCCCccccccchhhccCcccCCCCccccHHHHHHHHhc---------------CCCCCCCCcccccCCCCcccHH
Q 012813 68 ETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA---------------GNRTCPRTQQVLSHTILTPNHL 130 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~---------------~~~~~P~~~~~l~~~~l~~n~~ 130 (456)
...+..++|.||||.+.++|||+++|||.||+.||.+|+.. +...||.|+.+++...++|.+.
T Consensus 11 ~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred eeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 34567789999999999999999999999999999999852 1357999999999988888753
No 33
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.96 E-value=3.7e-10 Score=74.77 Aligned_cols=39 Identities=36% Similarity=0.807 Sum_probs=30.6
Q ss_pred cccchhhccCcccCCCCccccHHHHHHHHhcCC---CCCCCC
Q 012813 78 CPLSKELMRDPVILASGQTFDRPYIQRWLKAGN---RTCPRT 116 (456)
Q Consensus 78 Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~---~~~P~~ 116 (456)
|||+.++|+|||+++|||+|++++|++|+.... ..||.+
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999997532 358764
No 34
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.93 E-value=1.4e-09 Score=106.99 Aligned_cols=70 Identities=21% Similarity=0.423 Sum_probs=63.7
Q ss_pred CCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHH
Q 012813 71 SCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRS 141 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~ 141 (456)
.+...|+||||.+++.+||+++|||+||+.||.+|+.. ...||.|+.++....+.+|..|.+.++.|...
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 45668999999999999999999999999999999986 56899999999888999999999999999653
No 35
>PRK09687 putative lyase; Provisional
Probab=98.93 E-value=1.1e-07 Score=91.04 Aligned_cols=117 Identities=17% Similarity=0.085 Sum_probs=67.2
Q ss_pred ccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHh
Q 012813 296 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGD 373 (456)
Q Consensus 296 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~ 373 (456)
+++.|+.+|.+.+..++..|+.+|..+.... ..+++.|+.+|.+. .++..|+..|..+- +
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----------~ 221 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRK----------D 221 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccC----------C
Confidence 4555555555555555555555555552111 12445555555543 34444554444321 1
Q ss_pred hCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhh-cCCHHHHHHHHHHHHH
Q 012813 374 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ-DGTARAKRKATGILER 445 (456)
Q Consensus 374 ~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~-~~~~~~k~~A~~~L~~ 445 (456)
.-+++.|+..++.+. .+..|+.+|..+.. ..+++.|..+++ +.+++++++|.+.|..
T Consensus 222 ~~av~~Li~~L~~~~---~~~~a~~ALg~ig~------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 222 KRVLSVLIKELKKGT---VGDLIIEAAGELGD------------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred hhHHHHHHHHHcCCc---hHHHHHHHHHhcCC------------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 236778888877432 45566666666544 145688888886 7788999999998863
No 36
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.93 E-value=8.4e-08 Score=92.83 Aligned_cols=279 Identities=14% Similarity=0.068 Sum_probs=193.3
Q ss_pred HHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhcccccccc--CCCChhhHHHHHHHHHccccCc
Q 012813 167 LSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCE--NGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 167 ~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~--~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
..+++.|.+. .+...+-+-.+..-..+++..+-.+++ .|.++-++.++++.... .++.......++....-+..++
T Consensus 226 ~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD 304 (604)
T KOG4500|consen 226 FMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD 304 (604)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc
Confidence 3455555433 233334444444444447788888899 89999999999864320 0112223344555555567788
Q ss_pred chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcccc-----CChhHHHHHHHH
Q 012813 244 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-----GHQSAMKDVASA 318 (456)
Q Consensus 244 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~-----~~~~~~~~a~~a 318 (456)
++-..+...|.++..+++.+.+.+......++-+|.|++..++++..+++.|.+..|+.+|.. ++.+.+..++.|
T Consensus 305 eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA 384 (604)
T KOG4500|consen 305 ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA 384 (604)
T ss_pred hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 877777777668888999999999999999999999999999999999999999999999954 577889999999
Q ss_pred HHHhccCchhhHHHHhcCcHHHHHHHHcC--CchHHHHHHHHHHhhCCHH-HHHHHHhh-CcHHHHHHHhhhcCChhHHH
Q 012813 319 IFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTNHR-AVEEIGDL-GGVSCMLRIIRESTCDRNKE 394 (456)
Q Consensus 319 L~~L~~~~~~~~~~v~~g~v~~Lv~lL~~--~~~~~~a~~~L~~L~~~~~-~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~ 394 (456)
|+||...-.||..+..+|+++.++..+.. +.++..-++.|.-+....+ ...++... ..+..||+--++.+-..+.-
T Consensus 385 LRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~g 464 (604)
T KOG4500|consen 385 LRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAG 464 (604)
T ss_pred HHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhh
Confidence 99999999999999999999999999874 5788888888877766544 34444433 35677777666543333555
Q ss_pred HHHHHHHHHhccChh-hHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 395 NCIAILHTICLSDRT-KWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 395 ~A~~~L~~l~~~~~~-~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
...++|.-+..++.. .....+...|++..++..+-...-..+..|.-+|..+
T Consensus 465 ESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 465 ESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLST 517 (604)
T ss_pred hhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence 566666666665421 1112223456677776666555444555555544443
No 37
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.2e-06 Score=90.49 Aligned_cols=275 Identities=14% Similarity=0.228 Sum_probs=205.1
Q ss_pred hhhHHHHHHHhcCC--chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 163 RDHFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 163 ~~~i~~Lv~~L~~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
...|+.|+..+.++ .++++.|+..|..+++ .+|..++. .+++.|+..|..- ..|++....++.++.++.
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga--~Gmk~li~vL~~D----~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA--QGMKPLIQVLQRD----YMDPEIIKYALDTLLILT 91 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH--cccHHHHHHHhhc----cCCHHHHHHHHHHHHHHH
Confidence 46899999999655 6899999999999998 47777776 5789999999854 458999999999999987
Q ss_pred cCcc-------h----------hHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC--ccchhh-cccCccHHH
Q 012813 241 IHDN-------N----------KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVI-GKSGALKPL 300 (456)
Q Consensus 241 ~~~~-------~----------~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~--~~~~~i-~~~G~i~~L 300 (456)
.+++ . ...+....+.|..|+..+...+..+|..+...|.+|-... +.+..+ ...-+|..|
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l 171 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL 171 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence 6663 1 2355666778999999999999999999999999987654 344444 456899999
Q ss_pred HhccccCChhHHHHHHHHHHHhccCchhhHHHHh-cCcHHHHHHHHcCC------chHHHHHHHHHHhhCC-HHHHHHHH
Q 012813 301 IDLLDEGHQSAMKDVASAIFNLCITHENKARAVR-DGGVSVILKKIMDG------VHVDELLAILAMLSTN-HRAVEEIG 372 (456)
Q Consensus 301 v~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~-~g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~~-~~~~~~i~ 372 (456)
+.+|.+....++-.++-.|..|+.+...-+++|. .++...|+.++... -+.+.|+.+|-||-.+ ..+...|.
T Consensus 172 mdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr 251 (970)
T KOG0946|consen 172 MDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR 251 (970)
T ss_pred HHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh
Confidence 9999988888899999999999998887777775 58999999999742 4689999999999996 56788888
Q ss_pred hhCcHHHHHHHhhhc---CC-----hhHHHH----HHHHHHHHhcc-----ChhhHHHHHHhhccHHHHHHHh-hcCCH-
Q 012813 373 DLGGVSCMLRIIRES---TC-----DRNKEN----CIAILHTICLS-----DRTKWKAMREEESTHGTISKLA-QDGTA- 433 (456)
Q Consensus 373 ~~g~i~~Lv~ll~~~---~~-----~~~~~~----A~~~L~~l~~~-----~~~~~~~~~~~~g~~~~L~~Ll-~~~~~- 433 (456)
+.+.||.|.++|... ++ ...|.. |+.++..+..- ....++.++...+++..|..++ +.|-|
T Consensus 252 E~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~ 331 (970)
T KOG0946|consen 252 EGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA 331 (970)
T ss_pred ccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence 889999999888752 11 111222 33333333321 1133445565668888887765 55533
Q ss_pred HHHHHHHHHHHHH
Q 012813 434 RAKRKATGILERL 446 (456)
Q Consensus 434 ~~k~~A~~~L~~l 446 (456)
+++.-+.-.+.+.
T Consensus 332 dIltesiitvAev 344 (970)
T KOG0946|consen 332 DILTESIITVAEV 344 (970)
T ss_pred hHHHHHHHHHHHH
Confidence 4666555555544
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.78 E-value=8.3e-07 Score=88.80 Aligned_cols=277 Identities=11% Similarity=0.058 Sum_probs=188.5
Q ss_pred hhHHHHHHHhcC--CchhHHHHHHHHHHHhhcCchhhhhhhcc----CCchhhhhhccccccccCCCChhhHHHHHHHHH
Q 012813 164 DHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGES----HDAIPQLLSPLSESKCENGINPNLQEDVITTLL 237 (456)
Q Consensus 164 ~~i~~Lv~~L~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~----~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 237 (456)
..+..++..++. ..+.....+..+..+...++..-..|.+. .+....++.+|. .+|.-+...+..+|.
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~------~~d~~i~~~a~~iLt 126 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLN------RQDQFIVHMSFSILA 126 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHc------CCchhHHHHHHHHHH
Confidence 345566777753 34556667777777777665544555542 345667777887 456788899999888
Q ss_pred ccccCcchhHHHhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccC--ChhHHHH
Q 012813 238 NLSIHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG--HQSAMKD 314 (456)
Q Consensus 238 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~ 314 (456)
.+.........-........-|...|+++ +...+..++..|..|...++.|..+.+.++++.|+.+|+.. +.+.+-.
T Consensus 127 ~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~ 206 (429)
T cd00256 127 KLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQ 206 (429)
T ss_pred HHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHH
Confidence 88543321100000001223445556554 47788888899999999999999999888999999999863 4578889
Q ss_pred HHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCC---------------------------
Q 012813 315 VASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN--------------------------- 364 (456)
Q Consensus 315 a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~--------------------------- 364 (456)
++-++|-|+-.++....+...+.|+.|+++++.. .+..-++++|.||...
T Consensus 207 ~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~ 286 (429)
T cd00256 207 SIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLE 286 (429)
T ss_pred HHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHh
Confidence 9999999998888666667788999999998753 5666677777777642
Q ss_pred ------------------------------------------------------HHHHHHHHhhC--cHHHHHHHhhhcC
Q 012813 365 ------------------------------------------------------HRAVEEIGDLG--GVSCMLRIIREST 388 (456)
Q Consensus 365 ------------------------------------------------------~~~~~~i~~~g--~i~~Lv~ll~~~~ 388 (456)
.++...|.+.+ .+..|+++|..++
T Consensus 287 ~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~ 366 (429)
T cd00256 287 QRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSV 366 (429)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 11222222221 2445555554443
Q ss_pred ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 389 CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 389 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
++.+..-||.=+..++.+-|. .+.+++.-|+=..+++|+.+.++.+|..|..+++.+-
T Consensus 367 d~~~laVAc~Dige~vr~~P~-gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 367 DPIILAVACHDIGEYVRHYPR-GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CcceeehhhhhHHHHHHHCcc-HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 455555555556666666654 3567777789999999999999999999999998763
No 39
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.68 E-value=2.2e-07 Score=90.85 Aligned_cols=220 Identities=20% Similarity=0.151 Sum_probs=155.9
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhhcCchhhhhhhcc-----CCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 168 SLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGES-----HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 168 ~Lv~~L~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-----~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
.+++.++++.+.....+..+..+...++.....+... ......++.++. ..|.-++..|+..|..+...
T Consensus 62 ~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~------~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 62 NLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD------RNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-------SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc------CCCHHHHHHHHHHHHHHHHc
Confidence 4455554456777788888888888777655555431 125677777777 45889999999999998766
Q ss_pred cchhHHHhcCCCCHHHHHHHHhc----CCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcc------cc-CChhH
Q 012813 243 DNNKKLVAETPMVIPLLMDALRS----GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL------DE-GHQSA 311 (456)
Q Consensus 243 ~~~~~~i~~~~~~i~~Lv~lL~~----~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL------~~-~~~~~ 311 (456)
...+..... .+.++.+++.|.+ .+.+.+..++.+|.+|...+.+|..+.+.|+++.|+.+| .+ .+.+.
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 653333221 1366778888775 335567889999999999999999999999999999999 22 35688
Q ss_pred HHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHH--HHHHHHhhCcHHHHHHHhhh
Q 012813 312 MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHR--AVEEIGDLGGVSCMLRIIRE 386 (456)
Q Consensus 312 ~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv~ll~~ 386 (456)
+-.++-++|.|+-+++....+...+.|+.|+++++.. .+..-++++|.||+..+. ....++.+|+++.+-.+...
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 8999999999999999999999999999999999854 678889999999999754 88888888766555444443
Q ss_pred c-CChhHHH
Q 012813 387 S-TCDRNKE 394 (456)
Q Consensus 387 ~-~~~~~~~ 394 (456)
. ++++..+
T Consensus 295 k~~Dedl~e 303 (312)
T PF03224_consen 295 KWSDEDLTE 303 (312)
T ss_dssp --SSHHHHH
T ss_pred CCCCHHHHH
Confidence 2 2344443
No 40
>PRK09687 putative lyase; Provisional
Probab=98.68 E-value=5e-07 Score=86.52 Aligned_cols=88 Identities=9% Similarity=0.012 Sum_probs=43.1
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHH
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM 414 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~ 414 (456)
+++.|+.+|.++ .++..|+.+|..+..+. ..+++.|+.++... ++.++..|+..|..+-.
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~--------- 221 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDK-NEEIRIEAIIGLALRKD--------- 221 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCC-ChHHHHHHHHHHHccCC---------
Confidence 445555555433 34444444444442111 12345566666533 35666666666654211
Q ss_pred HHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 415 REEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 415 ~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
..+++.|.+.+++++ ++..|..+|.++.
T Consensus 222 ---~~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 222 ---KRVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred ---hhHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 134466666666655 3445666665554
No 41
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.68 E-value=4.9e-09 Score=74.10 Aligned_cols=43 Identities=30% Similarity=0.760 Sum_probs=30.9
Q ss_pred ccccccchhhccCcccC-CCCccccHHHHHHHHh-cCCCCCCCCc
Q 012813 75 EFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLK-AGNRTCPRTQ 117 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l-~~g~~~~r~~I~~~~~-~~~~~~P~~~ 117 (456)
.|+||||+.+|+|||.- .|||+|+|..|.+|+. .+...||+.+
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 68999999999999985 6999999999999994 3345799854
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.5e-06 Score=83.20 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=150.3
Q ss_pred CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCc-hhhHHHHhcCcHHHHHHHH
Q 012813 267 TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKI 345 (456)
Q Consensus 267 ~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL 345 (456)
+.+-++.|.--|..++..-+|...+...|+...++..|.+.+..+++.|+++|...+.+. ..+..+.+.|+.+.|+..+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 577888888888888888899999999999999999999999999999999999999866 4667778999999999999
Q ss_pred cCC---chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhc-CChhHHHHHHHHHHHHhccChhhHHHHHHhhcc
Q 012813 346 MDG---VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES-TCDRNKENCIAILHTICLSDRTKWKAMREEEST 420 (456)
Q Consensus 346 ~~~---~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~ 420 (456)
... ..+.+|+.++..|..+ +.+...+...+|...|..+|++. .+.+.+..++-++..|....... +.++...++
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~-~d~~~~~~f 254 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD-EDIASSLGF 254 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh-hhHHHHhhh
Confidence 853 5678899999999986 78999999999999999999973 45889999999999999877654 346666788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHH
Q 012813 421 HGTISKLAQDGTARAKRKATGILE 444 (456)
Q Consensus 421 ~~~L~~Ll~~~~~~~k~~A~~~L~ 444 (456)
...+..+..+....+.+.+...+-
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l 278 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALL 278 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHH
Confidence 888888888887777777765543
No 43
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.7e-06 Score=88.68 Aligned_cols=256 Identities=15% Similarity=0.177 Sum_probs=189.8
Q ss_pred hhhHHHHHHHhc--CCchhHHHHHHHHHH-HhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcc
Q 012813 163 RDHFLSLLKKMS--ATLPDQTEAAKELRL-LTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 239 (456)
Q Consensus 163 ~~~i~~Lv~~L~--~~~~~~~~a~~~L~~-L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L 239 (456)
.+.+++|++.|. +++..|.+|+..|.. |...+++.-..|-- .-.||.|+.+|+. ..+.++.-.|+++|.+|
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv-~slvp~Lv~LL~~-----E~n~DIMl~AcRaltyl 239 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPV-KSLVPVLVALLSH-----EHNFDIMLLACRALTYL 239 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccH-HHHHHHHHHHHhc-----cccHHHHHHHHHHHHHH
Confidence 346778888885 356778899998874 45555554443333 4689999999985 33689999999999999
Q ss_pred ccCc-chhHHHhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHH
Q 012813 240 SIHD-NNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 317 (456)
Q Consensus 240 s~~~-~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~ 317 (456)
..-= .....+++. ++||.|+.-|. -.-.++-+.+..+|-.++..+. ..|.++|++...+..|+=-+..+++.|+.
T Consensus 240 ~evlP~S~a~vV~~-~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~Ala 316 (1051)
T KOG0168|consen 240 CEVLPRSSAIVVDE-HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALA 316 (1051)
T ss_pred Hhhccchhheeecc-cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 7543 455555554 59999885554 4567899999999999997543 45677899999999888778889999999
Q ss_pred HHHHhccC--chhhHHHHhcCcHHHHHHHHcC--CchHHHHHHHHHHhhC----CHHHHHHHHhhCcHHHHHHHhhhcC-
Q 012813 318 AIFNLCIT--HENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIREST- 388 (456)
Q Consensus 318 aL~~L~~~--~~~~~~~v~~g~v~~Lv~lL~~--~~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~- 388 (456)
+..|.|.. .+.-..+++ ++|.|-.+|+. ....+.++-++..++. .++--+.+..+|.|....+++....
T Consensus 317 iaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t 394 (1051)
T KOG0168|consen 317 IAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPT 394 (1051)
T ss_pred HHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcc
Confidence 99999964 333333333 78999999984 4778888888887776 3677789999999999888887532
Q ss_pred --ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc
Q 012813 389 --CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD 430 (456)
Q Consensus 389 --~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~ 430 (456)
+..+...-++.|..+|...+-......+ .++...|..+++.
T Consensus 395 ~Ls~~~~~~vIrmls~msS~~pl~~~tl~k-~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 395 ILSNGTYTGVIRMLSLMSSGSPLLFRTLLK-LDIADTLKRILQG 437 (1051)
T ss_pred cccccchhHHHHHHHHHccCChHHHHHHHH-hhHHHHHHHHHhc
Confidence 2345666788888888887765445554 4888888888754
No 44
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.56 E-value=4e-08 Score=64.22 Aligned_cols=38 Identities=34% Similarity=0.850 Sum_probs=33.2
Q ss_pred cccchhhccCc-ccCCCCccccHHHHHHHHhcCCCCCCCC
Q 012813 78 CPLSKELMRDP-VILASGQTFDRPYIQRWLKAGNRTCPRT 116 (456)
Q Consensus 78 Cpi~~~~m~dP-v~l~~g~~~~r~~I~~~~~~~~~~~P~~ 116 (456)
|||+.+.++|| +++++||+|++.+|++|+.. ...||++
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 58899999999999999998 6889975
No 45
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.7e-06 Score=81.43 Aligned_cols=183 Identities=17% Similarity=0.180 Sum_probs=147.2
Q ss_pred CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHH
Q 012813 223 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLI 301 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv 301 (456)
+.+.+-++.|+.-|..+..+=+|...+...||..+ ++..+++++.++|+.|+++|...+.+. .....+.+.|+.+.|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~-ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVP-LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHH-HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 34678888888888888877778888888876555 666999999999999999999999865 5677888999999999
Q ss_pred hccccC-ChhHHHHHHHHHHHhccCc-hhhHHHHhcCcHHHHHHHHcCC----chHHHHHHHHHHhhCC-HHHHHHHHhh
Q 012813 302 DLLDEG-HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTN-HRAVEEIGDL 374 (456)
Q Consensus 302 ~lL~~~-~~~~~~~a~~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~~-~~~~~~i~~~ 374 (456)
.+|.+. +..++..|+.|+++|-.+. .+...+...++...|.+.|.++ ..+.+++..+..|... ......+...
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999875 4567799999999999866 5788888888899999999974 5788899999999885 3445555566
Q ss_pred CcHHHHHHHhhhcCChhHHHHHHHHHHHHhccC
Q 012813 375 GGVSCMLRIIRESTCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 375 g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 407 (456)
|....++.+....+ ...++.|+.++..+....
T Consensus 253 ~f~~~~~~l~~~l~-~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 253 GFQRVLENLISSLD-FEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhhHHHHHHhhccc-hhhhHHHHHHHHHHHHHH
Confidence 76666667776554 778999988887765543
No 46
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.54 E-value=3.4e-08 Score=65.34 Aligned_cols=36 Identities=33% Similarity=0.786 Sum_probs=23.1
Q ss_pred cccchhhccC----cccCCCCccccHHHHHHHHhcC---CCCCC
Q 012813 78 CPLSKELMRD----PVILASGQTFDRPYIQRWLKAG---NRTCP 114 (456)
Q Consensus 78 Cpi~~~~m~d----Pv~l~~g~~~~r~~I~~~~~~~---~~~~P 114 (456)
||||.+ |.+ |++++|||+|++.+|++++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999853 23466
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.54 E-value=6.9e-06 Score=91.45 Aligned_cols=224 Identities=17% Similarity=0.086 Sum_probs=134.5
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
...++.|++.|.+ ++.++..|+..|..+.. .++++.|+..|. +.++.++..|+.+|..+..
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~------D~d~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALG------DGAAAVRRAAAEGLRELVE 681 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHc------CCCHHHHHHHHHHHHHHHh
Confidence 3456777888864 47788888888776542 467788888887 6678888888888876521
Q ss_pred CcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHH
Q 012813 242 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 321 (456)
Q Consensus 242 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~ 321 (456)
.. ...+.|...|++.++.+|..++.+|..+.. +....|+..|.+.++.++..|+.+|..
T Consensus 682 ~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~ 740 (897)
T PRK13800 682 VL----------PPAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVS 740 (897)
T ss_pred cc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 11 123456666777777777777766665431 112334455555555555555555554
Q ss_pred hccCc-----------hhhHHHH---------hcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHH
Q 012813 322 LCITH-----------ENKARAV---------RDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSC 379 (456)
Q Consensus 322 L~~~~-----------~~~~~~v---------~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~ 379 (456)
+-... +.|..++ ....++.|..++.++ .++..|+.+|..+...+ ..+..
T Consensus 741 ~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~ 811 (897)
T PRK13800 741 VDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAA 811 (897)
T ss_pred ccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHH
Confidence 31100 0000000 011245566666544 34555555555443211 12245
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 380 MLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 380 Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
|+..+... ++.++..|+.+|..+.. ...++.|..++.+.+..++..|...|..+.
T Consensus 812 l~~aL~d~-d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 812 ATAALRAS-AWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred HHHHhcCC-ChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 66777654 47788888888876532 134488899999999999999999998863
No 48
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.50 E-value=2.9e-05 Score=77.82 Aligned_cols=236 Identities=15% Similarity=0.093 Sum_probs=164.9
Q ss_pred CchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHH-HhcC----CCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012813 206 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL-VAET----PMVIPLLMDALRSGTIETRSNAAAALFT 280 (456)
Q Consensus 206 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~-i~~~----~~~i~~Lv~lL~~~~~~~~~~aa~aL~~ 280 (456)
..+..++.+++. ....++....+..+..|-..++.+.. +.+. +.....++.+|..++.-+...++..|..
T Consensus 53 ~y~~~~l~ll~~-----~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 53 QYVKTFVNLLSQ-----IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence 466777788774 33577888888887777666654443 3322 3445567788988888888888888888
Q ss_pred hccCCccc-hhhcccCccHHHHhccccC-ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC----chHHHH
Q 012813 281 LSALDSNK-EVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDEL 354 (456)
Q Consensus 281 Ls~~~~~~-~~i~~~G~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~----~~~~~a 354 (456)
+....... ......-.+.-|...|++. +.+.+.-|+.+|..|...++-|..+.+.++++.|+.+|+.. ....++
T Consensus 128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 86543221 1110011333455556543 46778889999999999999999999998999999999853 567889
Q ss_pred HHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccCh-----hhHHHHHHhhccHHHHHHHhh
Q 012813 355 LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-----TKWKAMREEESTHGTISKLAQ 429 (456)
Q Consensus 355 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~-----~~~~~~~~~~g~~~~L~~Ll~ 429 (456)
+-++|.|+.+++....+.+.+.|+.|+++++...-+++-+-++.+|.|+...+. ..+...+...|+.+.+..|..
T Consensus 208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~ 287 (429)
T cd00256 208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQ 287 (429)
T ss_pred HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhc
Confidence 999999999998888777889999999999986558888899999999988541 112233334466665555554
Q ss_pred cC--CHHHHHHHHHHHHHH
Q 012813 430 DG--TARAKRKATGILERL 446 (456)
Q Consensus 430 ~~--~~~~k~~A~~~L~~l 446 (456)
.. ++++.+--..+-..|
T Consensus 288 rk~~DedL~edl~~L~e~L 306 (429)
T cd00256 288 RKYDDEDLTDDLKFLTEEL 306 (429)
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 43 666655544444444
No 49
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.49 E-value=1.6e-05 Score=88.51 Aligned_cols=225 Identities=16% Similarity=0.111 Sum_probs=136.8
Q ss_pred hhhHHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 163 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 163 ~~~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
...++.|++.|+++ ..++..|+..|..+.... ...+.|...|. +.++.++..|+.+|..+..
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----------~~~~~L~~~L~------~~d~~VR~~A~~aL~~~~~ 713 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----------PPAPALRDHLG------SPDPVVRAAALDVLRALRA 713 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----------CchHHHHHHhc------CCCHHHHHHHHHHHHhhcc
Confidence 44667788888643 677888888887664311 11223333443 2344555555554444321
Q ss_pred Ccc-------------hhHH----HhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcc
Q 012813 242 HDN-------------NKKL----VAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL 304 (456)
Q Consensus 242 ~~~-------------~~~~----i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL 304 (456)
.+. -|.. +... +..+.|..++.+.+.++|..++.+|..+... ..+.++.|..++
T Consensus 714 ~~~~~l~~~L~D~d~~VR~~Av~aL~~~-~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll 784 (897)
T PRK13800 714 GDAALFAAALGDPDHRVRIEAVRALVSV-DDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALT 784 (897)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHhcc-cCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHh
Confidence 000 0000 0000 0123344555555566666666555555321 123467888888
Q ss_pred ccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHH
Q 012813 305 DEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLR 382 (456)
Q Consensus 305 ~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 382 (456)
+++++.++..|+.+|..+.... .+++.++..|.++ .++..|+.+|..+.. ...++.|+.
T Consensus 785 ~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~ 845 (897)
T PRK13800 785 GDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVE 845 (897)
T ss_pred cCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHH
Confidence 8888888888888888774321 1335678888766 467778888876542 234688999
Q ss_pred HhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012813 383 IIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 444 (456)
Q Consensus 383 ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~ 444 (456)
++... +..++..|+.+|..+. .++ ...+.|...+.+.+..+++.|...|.
T Consensus 846 ~L~D~-~~~VR~~A~~aL~~~~-~~~----------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 846 ALTDP-HLDVRKAAVLALTRWP-GDP----------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HhcCC-CHHHHHHHHHHHhccC-CCH----------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99865 4999999999998862 121 33567888899999999999999886
No 50
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.48 E-value=7.5e-08 Score=89.76 Aligned_cols=65 Identities=20% Similarity=0.392 Sum_probs=60.7
Q ss_pred ccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHH
Q 012813 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCR 140 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~ 140 (456)
-+.|-||.+.|+-|+++|||||||--||..|+.. .+.||.|..+++...|.-|+.|.+.|+.+..
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 4789999999999999999999999999999997 7999999999999999999999999998743
No 51
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.39 E-value=2.5e-07 Score=84.95 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=43.2
Q ss_pred CCCCCccccccchhhccCc--------ccCCCCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 70 VSCPEEFKCPLSKELMRDP--------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dP--------v~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
.+..++..||||++.+.+| ++.+|||.||+.||.+|+.. ..+||.||.++.
T Consensus 169 ~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 169 YNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred hcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 3456678999999988764 56789999999999999986 689999999875
No 52
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.36 E-value=2.4e-07 Score=64.13 Aligned_cols=47 Identities=34% Similarity=0.604 Sum_probs=41.1
Q ss_pred CccccccchhhccCcccCCCCcc-ccHHHHHHHHhcCCCCCCCCccccc
Q 012813 74 EEFKCPLSKELMRDPVILASGQT-FDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
+++.|+|+++-..+++++||||. |+..++.+|+.. ...||++|++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 36789999999999999999999 999999999995 789999999875
No 53
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2e-05 Score=82.46 Aligned_cols=198 Identities=16% Similarity=0.143 Sum_probs=144.8
Q ss_pred ChhhHHHHHHHHH-ccccCcchhHHHhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc-CCccchhhcccCccHHHH
Q 012813 225 NPNLQEDVITTLL-NLSIHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLI 301 (456)
Q Consensus 225 ~~~~~~~a~~~L~-~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~-~~~~~~~i~~~G~i~~Lv 301 (456)
|+..+-+|+.-|. +|+...+.-...+-..-++|.|+.+|++. +.++...|+++|.+|+. .+.....+++.|+||.|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 4555544444333 34444432221221224899999999987 79999999999999996 567788889999999999
Q ss_pred hcccc-CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc--CCchHHHHHHHHHHhhCC--HHHHHHHHhhCc
Q 012813 302 DLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM--DGVHVDELLAILAMLSTN--HRAVEEIGDLGG 376 (456)
Q Consensus 302 ~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~--~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~ 376 (456)
.-|.. .-.++.+.++.||-.|+..+ -..+.++|++...+.+|. +-..+..|+++-.|+|.. ++.-.-+.+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ea-- 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEA-- 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHH--
Confidence 76654 56789999999999998866 355789999999988886 337899999999999984 5555555554
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHhc---cChhhHHHHHHhhccHHHHHHHh
Q 012813 377 VSCMLRIIRESTCDRNKENCIAILHTICL---SDRTKWKAMREEESTHGTISKLA 428 (456)
Q Consensus 377 i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~---~~~~~~~~~~~~~g~~~~L~~Ll 428 (456)
+|.|..+|+..+ .+.-+.++-++..++. +.+++..++.. .|.+.-.+.|+
T Consensus 337 lPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLl 389 (1051)
T KOG0168|consen 337 LPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLL 389 (1051)
T ss_pred HHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHH
Confidence 899999998764 7778888888877765 34455555554 46666666664
No 54
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.32 E-value=2.8e-06 Score=69.83 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=106.6
Q ss_pred chhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCc
Q 012813 207 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS 286 (456)
Q Consensus 207 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~ 286 (456)
-+..||+-... ..+.+.++..++-|.|.+.++-|-..+... .++...++.|...+.-..+.+.+.|+|+|.+..
T Consensus 17 Ylq~LV~efq~-----tt~~eakeqv~ANLANFAYDP~Nys~Lrql-~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~ 90 (173)
T KOG4646|consen 17 YLQHLVDEFQT-----TTNIEAKEQVTANLANFAYDPINYSHLRQL-DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT 90 (173)
T ss_pred HHHHHHHHHHH-----hccHHHHHHHHHHHHhhccCcchHHHHHHh-hHHHHHHHHhhcccHHHHHHhHHHHHhhccChH
Confidence 34445554543 558999999999999999999888888776 489999999999999999999999999999999
Q ss_pred cchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCch-hhHHHHhcCcHHH
Q 012813 287 NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSV 340 (456)
Q Consensus 287 ~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~~v~~g~v~~ 340 (456)
|+..|.+.+++|.++..++++...+...|+.+|..|+.... .+..+.+-.++..
T Consensus 91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~ 145 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRT 145 (173)
T ss_pred HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHH
Confidence 99999999999999999999999999999999999987653 4555544333333
No 55
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.29 E-value=1.3e-06 Score=84.36 Aligned_cols=51 Identities=27% Similarity=0.514 Sum_probs=47.6
Q ss_pred cccccchhhccCcccCC-CCccccHHHHHHHHhcCCCCCCCCcccccCCCCcc
Q 012813 76 FKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTP 127 (456)
Q Consensus 76 f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~ 127 (456)
+.|.|++++-++||+-| +||.|+|+.|+++..+ +.+||++++|++.++++|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 57999999999999999 9999999999999998 689999999999988876
No 56
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.7e-07 Score=81.67 Aligned_cols=57 Identities=26% Similarity=0.579 Sum_probs=51.0
Q ss_pred CccccccchhhccCcccCCCCccccHHHHHHHHhc--CCCCCCCCcccccCCCCcccHH
Q 012813 74 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA--GNRTCPRTQQVLSHTILTPNHL 130 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~--~~~~~P~~~~~l~~~~l~~n~~ 130 (456)
..|.|-||.+.=+|||+..|||-||=.||.+|+.. +...||+|+..++.+.++|-+.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 37999999999999999999999999999999973 3456999999999999998753
No 57
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.26 E-value=2.6e-07 Score=65.37 Aligned_cols=58 Identities=19% Similarity=0.411 Sum_probs=32.6
Q ss_pred ccccccchhhccCcccC-CCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHH
Q 012813 75 EFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMI 135 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i 135 (456)
-+.|++|.++|++||.+ .|.|+||+.||.+.+.. .||+|+.|....++.-|..|..+|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 46899999999999965 59999999999886654 399999999999999998887765
No 58
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.25 E-value=6.8e-07 Score=59.07 Aligned_cols=39 Identities=38% Similarity=0.958 Sum_probs=35.3
Q ss_pred cccchhhccCcc-cCCCCccccHHHHHHHHh-cCCCCCCCC
Q 012813 78 CPLSKELMRDPV-ILASGQTFDRPYIQRWLK-AGNRTCPRT 116 (456)
Q Consensus 78 Cpi~~~~m~dPv-~l~~g~~~~r~~I~~~~~-~~~~~~P~~ 116 (456)
|||+.+.+.+|+ ++++||+|++.+|.+|+. .+...||.+
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 999999999999999998 546679875
No 59
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=9.3e-07 Score=81.48 Aligned_cols=54 Identities=24% Similarity=0.460 Sum_probs=48.1
Q ss_pred CCC-ccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCc
Q 012813 72 CPE-EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 126 (456)
Q Consensus 72 ~p~-~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~ 126 (456)
+|+ .+.|-+|.+-+.||--+||||.||=+||..|+.+ ..-||.||+++++..++
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 444 5999999999999999999999999999999998 56799999999877654
No 60
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.20 E-value=0.00054 Score=70.34 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=114.4
Q ss_pred ChhhHHHHHHHHHccccCcc-hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CCccchhhcccCccHHHHh
Q 012813 225 NPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLID 302 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~-~~~~~~~i~~~G~i~~Lv~ 302 (456)
|...+..|+..+.+++..-. -+.. .....+...|+.+|..|+..++..+.++|.|+.. ..+.|..+.+.|+|+.|..
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcC-CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 66777777777777765443 2222 3333467779999999999999999999999997 5678999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCchhhHHHH--hcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhh
Q 012813 303 LLDEGHQSAMKDVASAIFNLCITHENKARAV--RDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDL 374 (456)
Q Consensus 303 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v--~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~ 374 (456)
++.+.+..++..++|+|+++.-..++..... +.=....++.+..++ .++|.++.+|+||..+ .+..+.+.+.
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~ 545 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK 545 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence 9999999999999999999998776544432 222234566677776 7899999999999886 4455555444
No 61
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.19 E-value=9.5e-07 Score=80.80 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=58.5
Q ss_pred cccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHH
Q 012813 76 FKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCR 140 (456)
Q Consensus 76 f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~ 140 (456)
+.|-||.+.++-|++++|||+||--||.+|+.. .+.||.|+.+....-+.-+..++..++.+..
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 689999999999999999999999999999997 7999999999888888888888888887754
No 62
>PF05536 Neurochondrin: Neurochondrin
Probab=98.19 E-value=6.9e-05 Score=78.35 Aligned_cols=190 Identities=15% Similarity=0.129 Sum_probs=133.7
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccCCcc----chhhcccCccHHHHhccccC-------ChhHHHHHHHHHHHhc
Q 012813 255 VIPLLMDALRSGTIETRSNAAAALFTLSALDSN----KEVIGKSGALKPLIDLLDEG-------HQSAMKDVASAIFNLC 323 (456)
Q Consensus 255 ~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~----~~~i~~~G~i~~Lv~lL~~~-------~~~~~~~a~~aL~~L~ 323 (456)
.+...+.+|+..+.+-|=.+...+.++...++. +..|.+.=+.+.|-+||.++ ....+.-|+..|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 355678888888866666777777888875542 33466665579999999873 3456778999999999
Q ss_pred cCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHH
Q 012813 324 ITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL 400 (456)
Q Consensus 324 ~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L 400 (456)
..++....---.+-||.|++.+..+ .....|+.+|..++.+++|++.+.+.|+++.|++++.+ .+...+.|+.+|
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHH
Confidence 9776443222235799999999854 57899999999999999999999999999999999986 378899999999
Q ss_pred HHHhccChhhHHH--HHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 401 HTICLSDRTKWKA--MREEESTHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 401 ~~l~~~~~~~~~~--~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
.+++.......-. ...-...+..|...........|-.+..+|..+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~ 211 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF 211 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 9998765421100 000013334444444444334444445555444
No 63
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00031 Score=76.33 Aligned_cols=278 Identities=13% Similarity=0.133 Sum_probs=160.9
Q ss_pred hhhHHHHHHHhc-----CCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHH
Q 012813 163 RDHFLSLLKKMS-----ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 237 (456)
Q Consensus 163 ~~~i~~Lv~~L~-----~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 237 (456)
..++..+...++ .+..++..|++++..++...+.++.........+|.++..+..... ..|.+....+...|-
T Consensus 154 ~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~--~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQ--DGDDDAAKSALEALI 231 (1075)
T ss_pred chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhh--ccchHHHHHHHHHHH
Confidence 344555555542 2234888899998888776653433333223478888877764332 334444555666665
Q ss_pred ccccCcc--hhHHHhcCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCccchhh---cc-----------------
Q 012813 238 NLSIHDN--NKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVI---GK----------------- 293 (456)
Q Consensus 238 ~Ls~~~~--~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~aL~~Ls~~~~~~~~i---~~----------------- 293 (456)
.+..... .+..+.. ++...+.+.++. +..+|..|...|..++.......+. .-
T Consensus 232 El~e~~pk~l~~~l~~---ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D 308 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLSQ---IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD 308 (1075)
T ss_pred HHHhhchHHHHHHHHH---HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc
Confidence 5544332 1222211 333333444333 3455555555555444331000000 00
Q ss_pred -------------------------------cC---c----cHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHh-
Q 012813 294 -------------------------------SG---A----LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR- 334 (456)
Q Consensus 294 -------------------------------~G---~----i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~- 334 (456)
.| + ++.+-.+|.+.+..-++.|+.+|..++.. +.....
T Consensus 309 ~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG---c~~~m~~ 385 (1075)
T KOG2171|consen 309 DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEG---CSDVMIG 385 (1075)
T ss_pred hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc---cHHHHHH
Confidence 11 2 22223344455556666666666666443 222222
Q ss_pred --cCcHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccCh
Q 012813 335 --DGGVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR 408 (456)
Q Consensus 335 --~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~ 408 (456)
..+++..+..|.++ .++..|+-++..++.+ ++..+.. ..-.++.|+..+.+..+++++.+|+.+|.|+.....
T Consensus 386 ~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 386 NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 14566667777776 6788899999999996 5544443 334677899999887779999999999999988765
Q ss_pred hh-HHHHHHhhccHH-HHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 012813 409 TK-WKAMREEESTHG-TISKLAQDGTARAKRKATGILERLKRTVN 451 (456)
Q Consensus 409 ~~-~~~~~~~~g~~~-~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~ 451 (456)
.. ....+ .+++. .|..|.+++++.+|+.+...+.-....++
T Consensus 465 ~~~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 465 KSILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 32 22222 24455 55557789999999999999887765544
No 64
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.18 E-value=5.3e-05 Score=79.63 Aligned_cols=277 Identities=17% Similarity=0.139 Sum_probs=168.7
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCCccccccccccchhhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhcc
Q 012813 126 TPNHLIREMISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGES 204 (456)
Q Consensus 126 ~~n~~lk~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~ 204 (456)
..++.+|+..--++..-...-|. .-.-.+..+.+.|.+ ++..+..|++.|.+++. ++.. +
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~------------~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~----~- 113 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPE------------LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMA----E- 113 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHH------------HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHH----H-
T ss_pred CCCHHHHHHHHHHHHHHhhcchh------------HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchh----h-
Confidence 66777888777666544222111 011245566677754 46778888888888874 2322 2
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHh-cc
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTL-SA 283 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~L-s~ 283 (456)
..++.+..++. +.++-++..|+.++..+....+. .+... +++.+..+|.+.++.++.+|+.++..+ ..
T Consensus 114 -~l~~~v~~ll~------~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 182 (526)
T PF01602_consen 114 -PLIPDVIKLLS------DPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCN 182 (526)
T ss_dssp -HHHHHHHHHHH------SSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCT
T ss_pred -HHHHHHHHHhc------CCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccC
Confidence 34566777777 56789999999999888655432 22222 578888999888999999999999988 21
Q ss_pred CCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHh
Q 012813 284 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAML 361 (456)
Q Consensus 284 ~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L 361 (456)
.+... . .-...+..|.+++...++-.+...+..|..++........- ...++.+..++.+. .+.-.|+.++..+
T Consensus 183 ~~~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 183 DDSYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp HHHHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 11111 1 11344555666666678888888888888877654322210 33566666666643 5666677777777
Q ss_pred hCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHH
Q 012813 362 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATG 441 (456)
Q Consensus 362 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~ 441 (456)
...+. .-..+++.|+.++.+. ++.++-.++..|..++...+. .+. .....+..+..+.+..+|.++..
T Consensus 259 ~~~~~-----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~----~v~--~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 259 SPSPE-----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPP----AVF--NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp SSSHH-----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHH----HHG--THHHHHHHHHCSSSHHHHHHHHH
T ss_pred hcchH-----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccch----hhh--hhhhhhheecCCCChhHHHHHHH
Confidence 76655 2223466777777743 466777788887777776522 221 11122223333566667777777
Q ss_pred HHHHHhc
Q 012813 442 ILERLKR 448 (456)
Q Consensus 442 ~L~~l~~ 448 (456)
+|..+..
T Consensus 327 lL~~l~~ 333 (526)
T PF01602_consen 327 LLYKLAN 333 (526)
T ss_dssp HHHHH--
T ss_pred HHhhccc
Confidence 7776654
No 65
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.16 E-value=2.7e-06 Score=78.17 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=80.9
Q ss_pred HHHHHHHHhhCCCCCHHHHHH-HHHHHHHhhhhHHhhhhhhhhhccCCCCCCccccccchhhccCcccCC-CCccccHHH
Q 012813 24 LQKLVRLIVDDVDYRTETIDQ-ARDTLCALKELKTKKRSLSLKLHETVSCPEEFKCPLSKELMRDPVILA-SGQTFDRPY 101 (456)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~Cpi~~~~m~dPv~l~-~g~~~~r~~ 101 (456)
...-..||.+++.|....-|. .|..+++-++........ ...-..-.+| +.||+|+.++++|+-.| |||+||..|
T Consensus 225 ~~~a~imit~EG~yVv~qpdvqsWe~Yq~r~~a~~~~~Dq-v~k~~~~~i~--LkCplc~~Llrnp~kT~cC~~~fc~ec 301 (427)
T COG5222 225 PSNAAIMITPEGGYVVAQPDVQSWEKYQQRTKAVAEIPDQ-VYKMQPPNIS--LKCPLCHCLLRNPMKTPCCGHTFCDEC 301 (427)
T ss_pred ccccceEEcCCCCeEEeccchHHHHHHHHHHHhhhhCchh-hhccCCCCcc--ccCcchhhhhhCcccCccccchHHHHH
Confidence 333445677888887665443 677666544432221111 1111222344 89999999999999886 899999999
Q ss_pred HHHHHhcCCCCCCCCcc-cccCCCCcccHHHHHHHHHHHHHc
Q 012813 102 IQRWLKAGNRTCPRTQQ-VLSHTILTPNHLIREMISQWCRSQ 142 (456)
Q Consensus 102 I~~~~~~~~~~~P~~~~-~l~~~~l~~n~~lk~~i~~w~~~~ 142 (456)
|+..+...+..||.|.. .+-.+.|.|+...+..++.+.+.+
T Consensus 302 i~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 302 IGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred HhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 99998866889999854 355678999999999999887643
No 66
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.16 E-value=8e-05 Score=72.61 Aligned_cols=278 Identities=14% Similarity=0.059 Sum_probs=176.7
Q ss_pred hHHHHHHHhcC--CchhHHHHHHHHHHHhhcCchhhhhhhcc-----CCchhhhhhccccccccCCCChhhHHHHHHHHH
Q 012813 165 HFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGES-----HDAIPQLLSPLSESKCENGINPNLQEDVITTLL 237 (456)
Q Consensus 165 ~i~~Lv~~L~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-----~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 237 (456)
.+..++..++. ..+...-.+..+..+-..+...-..+... .-.-+..+.+|. ..+.-+.+...++|.
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~------r~d~~iv~~~~~Ils 139 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLN------RQDTFIVEMSFRILS 139 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHh------cCChHHHHHHHHHHH
Confidence 44455555652 23444455555554444333222222210 112455667776 335566676888888
Q ss_pred ccccCcchhHHHhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcccc--CChhHHHH
Q 012813 238 NLSIHDNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE--GHQSAMKD 314 (456)
Q Consensus 238 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~--~~~~~~~~ 314 (456)
.++.....+....+..-....|...+++ .+......++++|..+...++.|..++...++..|+..+.+ .+-+++-.
T Consensus 140 ~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYq 219 (442)
T KOG2759|consen 140 KLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQ 219 (442)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHH
Confidence 8776554333222211234445666776 46888999999999999999999999998888999988843 35667777
Q ss_pred HHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCH--------------------------
Q 012813 315 VASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNH-------------------------- 365 (456)
Q Consensus 315 a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~-------------------------- 365 (456)
.+-++|-|.-++.....+-..+.++.|.+++++. .+..-+++++.|++..+
T Consensus 220 sifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~ 299 (442)
T KOG2759|consen 220 SIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLE 299 (442)
T ss_pred HHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHH
Confidence 7778887777776666665567777777777653 45555666666665322
Q ss_pred -------------------------------------------------------HHHHHHHhh--CcHHHHHHHhhhcC
Q 012813 366 -------------------------------------------------------RAVEEIGDL--GGVSCMLRIIREST 388 (456)
Q Consensus 366 -------------------------------------------------------~~~~~i~~~--g~i~~Lv~ll~~~~ 388 (456)
++...+.+. ..+..|+++|+.++
T Consensus 300 ~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~ 379 (442)
T KOG2759|consen 300 ERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN 379 (442)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC
Confidence 111222211 13455556666554
Q ss_pred ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 389 CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 389 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
+|..-.-|+.=+....++-|+ .+.+++.-|+=+.++.|+.+.++++|-.|..+++.|-.+
T Consensus 380 Dp~iL~VAc~DIge~Vr~yP~-gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 380 DPIILCVACHDIGEYVRHYPE-GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred CCceeehhhhhHHHHHHhCch-HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 455555566666666666654 367888889999999999999999999999999877543
No 67
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=9.9e-05 Score=76.82 Aligned_cols=212 Identities=17% Similarity=0.181 Sum_probs=164.8
Q ss_pred chhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccC
Q 012813 207 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSAL 284 (456)
Q Consensus 207 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~aL~~Ls~~ 284 (456)
-|+.|++.+.+ +.-.+-+..|+..|..+++ .+|..++.. ++++|+..|+.. +++....+.-+++++...
T Consensus 23 TI~kLcDRves-----sTL~eDRR~A~rgLKa~sr--kYR~~Vga~--Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 23 TIEKLCDRVES-----STLLEDRRDAVRGLKAFSR--KYREEVGAQ--GMKPLIQVLQRDYMDPEIIKYALDTLLILTSH 93 (970)
T ss_pred HHHHHHHHHhh-----ccchhhHHHHHHHHHHHHH--HHHHHHHHc--ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 56677776654 3346778889999987763 466666655 377799999865 799999999999999876
Q ss_pred Cc------c-c----------hh-hcccCccHHHHhccccCChhHHHHHHHHHHHhccCc--hhhHHHHh-cCcHHHHHH
Q 012813 285 DS------N-K----------EV-IGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH--ENKARAVR-DGGVSVILK 343 (456)
Q Consensus 285 ~~------~-~----------~~-i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~--~~~~~~v~-~g~v~~Lv~ 343 (456)
++ + + .. |-..+-|..|+..+...|-.++..+...|.+|-.+. +.+..+.. --+|..|+.
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 63 1 2 11 223688999999999999999999999999986654 45666654 588999999
Q ss_pred HHcCC--chHHHHHHHHHHhhCCH-HHHHHHHhhCcHHHHHHHhhhc---CChhHHHHHHHHHHHHhccChhhHHHHHHh
Q 012813 344 KIMDG--VHVDELLAILAMLSTNH-RAVEEIGDLGGVSCMLRIIRES---TCDRNKENCIAILHTICLSDRTKWKAMREE 417 (456)
Q Consensus 344 lL~~~--~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~ 417 (456)
+|.+. .++..++-.|..|..+. ...+.+.=.++...|..++... ++..+-+-|+.+|.||-..+... +.++.+
T Consensus 174 lL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN-Q~~FrE 252 (970)
T KOG0946|consen 174 LLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN-QNFFRE 252 (970)
T ss_pred HHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch-hhHHhc
Confidence 99975 67888999999999964 5555555668999999999873 23467899999999999988765 677788
Q ss_pred hccHHHHHHHh
Q 012813 418 ESTHGTISKLA 428 (456)
Q Consensus 418 ~g~~~~L~~Ll 428 (456)
.+.++.|.+|+
T Consensus 253 ~~~i~rL~klL 263 (970)
T KOG0946|consen 253 GSYIPRLLKLL 263 (970)
T ss_pred cccHHHHHhhc
Confidence 89999999876
No 68
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.00042 Score=65.08 Aligned_cols=269 Identities=16% Similarity=0.208 Sum_probs=181.1
Q ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc
Q 012813 166 FLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 244 (456)
Q Consensus 166 i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 244 (456)
...+++++.+ ++.++..|+..+..++.. ..+.....+.-.++.+..++.. .++ .+.|+.+|.|++.+..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~------~~~--~~~a~~alVnlsq~~~ 74 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD------LDP--AEPAATALVNLSQKEE 74 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC------ccc--ccHHHHHHHHHHhhHH
Confidence 3467888864 578888899888888874 4444444434567778888872 223 7789999999999998
Q ss_pred hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhc---c----cCccHHHHhccccC-Ch-hHHHHH
Q 012813 245 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIG---K----SGALKPLIDLLDEG-HQ-SAMKDV 315 (456)
Q Consensus 245 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~---~----~G~i~~Lv~lL~~~-~~-~~~~~a 315 (456)
-+..+... ++..++..+-++....-...+.+|.||+..++....+. . .|.+.......+.+ +. .-....
T Consensus 75 l~~~ll~~--~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~yl 152 (353)
T KOG2973|consen 75 LRKKLLQD--LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYL 152 (353)
T ss_pred HHHHHHHH--HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHH
Confidence 88888775 78888888888867777888889999998776433322 1 45555444444443 22 235667
Q ss_pred HHHHHHhccCchhhHHHHhcCcHH--HHHHHHcCC-c-hHHHHHHHHHHhhCCHHHHHHHHhhC--cHHHHH--------
Q 012813 316 ASAIFNLCITHENKARAVRDGGVS--VILKKIMDG-V-HVDELLAILAMLSTNHRAVEEIGDLG--GVSCML-------- 381 (456)
Q Consensus 316 ~~aL~~L~~~~~~~~~~v~~g~v~--~Lv~lL~~~-~-~~~~a~~~L~~L~~~~~~~~~i~~~g--~i~~Lv-------- 381 (456)
+-.+.||+....+|..+.....+| .|+.+=..+ . -+...+++|.|.|.+......+...+ .++.++
T Consensus 153 A~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 153 APVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccc
Confidence 888999999999998887665332 232222212 2 24457899999998877666665532 233322
Q ss_pred -------------HHhhh----cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhh-cCCHHHHHHHHHHH
Q 012813 382 -------------RIIRE----STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ-DGTARAKRKATGIL 443 (456)
Q Consensus 382 -------------~ll~~----~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~-~~~~~~k~~A~~~L 443 (456)
+++.. ..++.++..-+.+|..||...+++ +.++.-|+.+.+.++=. ..++++.+.+-.+.
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR--e~lR~kgvYpilRElhk~e~ded~~~ace~vv 310 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR--EVLRSKGVYPILRELHKWEEDEDIREACEQVV 310 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH--HHHHhcCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence 22221 235788999999999999876553 66666566655555533 24777888888888
Q ss_pred HHHhc
Q 012813 444 ERLKR 448 (456)
Q Consensus 444 ~~l~~ 448 (456)
+++-+
T Consensus 311 q~Lv~ 315 (353)
T KOG2973|consen 311 QMLVR 315 (353)
T ss_pred HHHHh
Confidence 88765
No 69
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.6e-06 Score=83.32 Aligned_cols=68 Identities=31% Similarity=0.619 Sum_probs=57.5
Q ss_pred CCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHc
Q 012813 72 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQ 142 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~ 142 (456)
..+++.||||.+.+++|+++||||+|||.||..++. ....||.|+. ... .+.+|..+...+..+...+
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLR 77 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcC
Confidence 446899999999999999999999999999999998 4678999996 322 7779999998888775543
No 70
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.09 E-value=2.8e-05 Score=64.04 Aligned_cols=134 Identities=12% Similarity=0.157 Sum_probs=107.0
Q ss_pred ccCccHHHHhcccc-CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHH
Q 012813 293 KSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVE 369 (456)
Q Consensus 293 ~~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~ 369 (456)
+.|-+..||.=... .+.++++....-|.|.+-++-|-..+.+..++..+++-|..+ .+++.+++.|+|+|.++.+.+
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 34455666665544 488999999999999999999999999999999999999865 689999999999999999999
Q ss_pred HHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh
Q 012813 370 EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA 428 (456)
Q Consensus 370 ~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll 428 (456)
-|.++++++.++..+.+. ...+--.|+.+|..|+...+.....+. ...++..+.+..
T Consensus 94 ~I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell-~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELL-SPAVVRTVQRWR 150 (173)
T ss_pred HHHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhc-cHHHHHHHHHHH
Confidence 999999999999888754 377788899999999998776533443 224444444433
No 71
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.06 E-value=1.7e-06 Score=58.09 Aligned_cols=40 Identities=38% Similarity=0.821 Sum_probs=33.9
Q ss_pred ccccchhhcc---CcccCCCCccccHHHHHHHHhcCCCCCCCCc
Q 012813 77 KCPLSKELMR---DPVILASGQTFDRPYIQRWLKAGNRTCPRTQ 117 (456)
Q Consensus 77 ~Cpi~~~~m~---dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~ 117 (456)
.|||+.+-|. .++.++|||.|.+.+|.+|+.. +.+||++|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999984 4567899999999999999997 57999985
No 72
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.04 E-value=0.00014 Score=76.41 Aligned_cols=249 Identities=15% Similarity=0.185 Sum_probs=166.1
Q ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcc-ccCc
Q 012813 166 FLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL-SIHD 243 (456)
Q Consensus 166 i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L-s~~~ 243 (456)
++.+.+.+.+ ++.+|..|+.++..+.+.+++. +.. . .++.+..+|. +.++.++..|+.++..+ ...+
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~-~-~~~~l~~lL~------d~~~~V~~~a~~~l~~i~~~~~ 184 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VED-E-LIPKLKQLLS------DKDPSVVSAALSLLSEIKCNDD 184 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHG-G-HHHHHHHHTT------HSSHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHH-H-HHHHHhhhcc------CCcchhHHHHHHHHHHHccCcc
Confidence 4445555554 4678899999999998865443 222 2 6788888887 56799999999999998 1111
Q ss_pred chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhc
Q 012813 244 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 323 (456)
Q Consensus 244 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 323 (456)
... .+.. ..+..|..++...++-.+.....+|..++........- ...++.+..++.+.++.+.-.|+.++..+.
T Consensus 185 ~~~-~~~~--~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 185 SYK-SLIP--KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHT-THHH--HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhh-hhHH--HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 111 1221 13444555566778889999999998887654322210 456888888888888899999999999887
Q ss_pred cCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHH
Q 012813 324 ITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 401 (456)
Q Consensus 324 ~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~ 401 (456)
.... .-..+++.|++++.++ +++..++..|..++... ...+. .....+..+..+++..++..++.+|.
T Consensus 260 ~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~ 329 (526)
T PF01602_consen 260 PSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLY 329 (526)
T ss_dssp SSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred cchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHh
Confidence 7665 3334788999999865 56778889999888754 22222 22334455554445888999999999
Q ss_pred HHhccChhhHHHHHHhhccHHHHHHHh-hcCCHHHHHHHHHHHHHHhc
Q 012813 402 TICLSDRTKWKAMREEESTHGTISKLA-QDGTARAKRKATGILERLKR 448 (456)
Q Consensus 402 ~l~~~~~~~~~~~~~~~g~~~~L~~Ll-~~~~~~~k~~A~~~L~~l~~ 448 (456)
.++... ..+.+ ++.|...+ ..+++..++.+...+..++.
T Consensus 330 ~l~~~~--n~~~I------l~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 330 KLANES--NVKEI------LDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp HH--HH--HHHHH------HHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred hccccc--chhhH------HHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 998743 22333 35566666 44466788888887777764
No 73
>PF05536 Neurochondrin: Neurochondrin
Probab=97.99 E-value=0.00041 Score=72.60 Aligned_cols=234 Identities=14% Similarity=0.113 Sum_probs=151.2
Q ss_pred hhhhhhccccccccCCCChhhHHHHHHHHHccccCcc----hhHHHhcCCCCHHHHHHHHhcC-------CHHHHHHHHH
Q 012813 208 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN----NKKLVAETPMVIPLLMDALRSG-------TIETRSNAAA 276 (456)
Q Consensus 208 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~----~~~~i~~~~~~i~~Lv~lL~~~-------~~~~~~~aa~ 276 (456)
+..-+.+|+. .+.+-+-.++..+.++...++ .++.+.+.-| .+.|-++|+.+ ....+.-|+.
T Consensus 7 l~~c~~lL~~------~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 7 LEKCLSLLKS------ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred HHHHHHHhcc------CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 4445566663 233445556666666665554 2334555543 67888999873 3567778888
Q ss_pred HHHHhccCCccchhhcccCccHHHHhccccCCh-hHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC-chHHHH
Q 012813 277 ALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQ-SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-VHVDEL 354 (456)
Q Consensus 277 aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~-~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~-~~~~~a 354 (456)
.|..+|..++.+..---.+-||.|++.+.+.+. .+...|+.+|..++..++++..+++.|+++.|.+.+.++ ...+.|
T Consensus 80 vL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~A 159 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIA 159 (543)
T ss_pred HHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHH
Confidence 899999866554322223679999999988777 999999999999999999999999999999999999875 678999
Q ss_pred HHHHHHhhCCHHHHHHHHhh----CcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHh----hccHHHHHH
Q 012813 355 LAILAMLSTNHRAVEEIGDL----GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREE----ESTHGTISK 426 (456)
Q Consensus 355 ~~~L~~L~~~~~~~~~i~~~----g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~----~g~~~~L~~ 426 (456)
+.+|.+++........-... ..++.|-..+.... ...+-..+..|..+-...+......... .....-|..
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~-~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH-GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 99999998753211111111 12344444444332 4456667777777765552110011111 234445566
Q ss_pred HhhcC-CHHHHHHHHHHHHHHhcc
Q 012813 427 LAQDG-TARAKRKATGILERLKRT 449 (456)
Q Consensus 427 Ll~~~-~~~~k~~A~~~L~~l~~~ 449 (456)
++++. ++.-|..|..+...|-++
T Consensus 239 iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 239 ILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHH
Confidence 77776 555666666665555444
No 74
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.00012 Score=68.58 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=135.8
Q ss_pred hhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccch
Q 012813 210 QLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKE 289 (456)
Q Consensus 210 ~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~ 289 (456)
.++.++. +.+|.++..|+..|.+++.. ..+.....+...++.+..++....+ -+.|+.+|.|++....-+.
T Consensus 7 elv~ll~------~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~ 77 (353)
T KOG2973|consen 7 ELVELLH------SLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRK 77 (353)
T ss_pred HHHHHhc------cCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHH
Confidence 4667777 55789999999999999877 4444444344567778888877665 6778889999999888888
Q ss_pred hhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHh--c----CcHHHHHHHHcCC-----chHHHHHHHH
Q 012813 290 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR--D----GGVSVILKKIMDG-----VHVDELLAIL 358 (456)
Q Consensus 290 ~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~--~----g~v~~Lv~lL~~~-----~~~~~a~~~L 358 (456)
.+... .+..++.++.++........+.+|.||+..+.....+.. . .++..+++..-++ .--.+..-++
T Consensus 78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 87766 888899998887666788899999999998875554431 1 3444444444433 2346678899
Q ss_pred HHhhCCHHHHHHHHhhCc--HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhh
Q 012813 359 AMLSTNHRAVEEIGDLGG--VSCMLRIIRESTCDRNKENCIAILHTICLSDRTK 410 (456)
Q Consensus 359 ~~L~~~~~~~~~i~~~g~--i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~ 410 (456)
.||+..+.+|..+.+... ++.++.+-. .++..-+..-+++|.|.|...+.+
T Consensus 157 ~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h 209 (353)
T KOG2973|consen 157 ANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH 209 (353)
T ss_pred HHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH
Confidence 999999999999976653 233443333 233444566888999999876644
No 75
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00073 Score=73.54 Aligned_cols=264 Identities=16% Similarity=0.145 Sum_probs=161.7
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhc-cCCchhhhhhcccccccc----C--C---CC-hhhHHHHHHHHHccccCcch
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRALFGE-SHDAIPQLLSPLSESKCE----N--G---IN-PNLQEDVITTLLNLSIHDNN 245 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~~i~~-~~g~i~~Lv~lL~~~~~~----~--~---~~-~~~~~~a~~~L~~Ls~~~~~ 245 (456)
...|..|+..|..+++.-+...+.... ..-.++.++.++.....+ + . ++ ..--..|..+|-.++.+=..
T Consensus 263 ~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g 342 (1075)
T KOG2171|consen 263 NSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG 342 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh
Confidence 345667888777777753333222211 023566666666544321 0 0 01 11223344555555544332
Q ss_pred hHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc-cCccHHHHhccccCChhHHHHHHHHHHHhcc
Q 012813 246 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCI 324 (456)
Q Consensus 246 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 324 (456)
+...- -+++.+-.+|.+.+..-|.++..+|..++.... +..++. ..+++..+..|.++++.++..|+.+++.++.
T Consensus 343 ~~v~p---~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 343 KQVLP---PLFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred hhehH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence 22111 145556677888899999999888887765321 222222 3578888889999999999999999999998
Q ss_pred Cc-hhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHH--HHHHHHhhCcHHHHHHHhhhcCChhHHHHHHH
Q 012813 325 TH-ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHR--AVEEIGDLGGVSCMLRIIRESTCDRNKENCIA 398 (456)
Q Consensus 325 ~~-~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~ 398 (456)
+- ..-.+-...-.+|.|+..+.+. .++.+|+.+|.|+...-. .-.-..+ +.+..++.++..++++.+++.++.
T Consensus 419 dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 419 DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVT 497 (1075)
T ss_pred hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHH
Confidence 64 2333333445677888888864 678889988888876422 1111111 345545545554556999999999
Q ss_pred HHHHHhccChhhHHHHHHhhccHHHHHHHhhcCC-HH---HHHHHHHHHHHHh
Q 012813 399 ILHTICLSDRTKWKAMREEESTHGTISKLAQDGT-AR---AKRKATGILERLK 447 (456)
Q Consensus 399 ~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~-~~---~k~~A~~~L~~l~ 447 (456)
+|..++....+....-. ...++.|..++++++ .+ .|.+....+..+.
T Consensus 498 aIasvA~AA~~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 498 AIASVADAAQEKFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHhhhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 99999987766554444 367888889998875 33 4445444444443
No 76
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.98 E-value=8.1e-05 Score=76.19 Aligned_cols=139 Identities=10% Similarity=0.094 Sum_probs=111.9
Q ss_pred CChhHHHHHHHHHHHhccCch-hhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHH
Q 012813 307 GHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLR 382 (456)
Q Consensus 307 ~~~~~~~~a~~aL~~L~~~~~-~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ 382 (456)
.|......|+-++.+++..-. -+...-+..+..+|++++.+| .+...++++|.|+.- ...-+..|.+.|||..|.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 366777888888888876543 344455668899999999987 567789999999987 4788999999999999999
Q ss_pred HhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 383 IIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 383 ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
++.... +.++..++|+|+++..+..+..+.....--....+..+..+.+..+++.+-.+|||+
T Consensus 469 ~~~~~~-~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 469 MLTDPD-FNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HhcCCC-chHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 998754 889999999999999988765544443334555677778888999999999999998
No 77
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.96 E-value=7.7e-06 Score=54.76 Aligned_cols=43 Identities=42% Similarity=0.933 Sum_probs=38.0
Q ss_pred ccccchhhccCcccCC-CCccccHHHHHHHHhcCCCCCCCCccc
Q 012813 77 KCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQV 119 (456)
Q Consensus 77 ~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~~~~~~P~~~~~ 119 (456)
.|||+.+.+.+|+.++ |||.|++.++.+|+..+...||.++.+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888776 999999999999998756789999865
No 78
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.94 E-value=2.2e-05 Score=51.77 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=37.1
Q ss_pred CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhc
Q 012813 364 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 405 (456)
Q Consensus 364 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 405 (456)
+++++..+++.|+++.|+.+|.+. ++.+++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 468899999999999999999965 59999999999999974
No 79
>PHA02926 zinc finger-like protein; Provisional
Probab=97.92 E-value=6.2e-06 Score=73.32 Aligned_cols=54 Identities=15% Similarity=0.363 Sum_probs=43.4
Q ss_pred cCCCCCCccccccchhhccC---------cccCCCCccccHHHHHHHHhcC-----CCCCCCCccccc
Q 012813 68 ETVSCPEEFKCPLSKELMRD---------PVILASGQTFDRPYIQRWLKAG-----NRTCPRTQQVLS 121 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~~~m~d---------Pv~l~~g~~~~r~~I~~~~~~~-----~~~~P~~~~~l~ 121 (456)
+....+.+..|+||++...+ +++.+|||+||..||.+|.... ..+||.||+++.
T Consensus 163 ~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 163 DVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 44556778999999998754 4677899999999999999742 245999999875
No 80
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.91 E-value=5.8e-06 Score=54.55 Aligned_cols=40 Identities=30% Similarity=0.446 Sum_probs=37.1
Q ss_pred CccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhcc
Q 012813 285 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 324 (456)
Q Consensus 285 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 324 (456)
++++..+++.|+++.|+++|+++++++++.|+++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4678889999999999999999999999999999999973
No 81
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.85 E-value=0.0014 Score=65.25 Aligned_cols=266 Identities=14% Similarity=0.119 Sum_probs=172.3
Q ss_pred HhcCCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhc
Q 012813 172 KMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAE 251 (456)
Q Consensus 172 ~L~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 251 (456)
.|+++.+++..|.+.++.+.. ++..-..+.+ .+.--.++.-|... ..+..-+++|+..++.+...+.....+-
T Consensus 34 lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~-l~id~~ii~SL~~~----~~~~~ER~QALkliR~~l~~~~~~~~~~- 106 (371)
T PF14664_consen 34 LLSDSKEVRAAGYRILRYLIS-DEESLQILLK-LHIDIFIIRSLDRD----NKNDVEREQALKLIRAFLEIKKGPKEIP- 106 (371)
T ss_pred HCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHH-cCCchhhHhhhccc----CCChHHHHHHHHHHHHHHHhcCCcccCC-
Confidence 345567778888888888888 4555556665 45434444555432 2345678899999988765543333332
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHH
Q 012813 252 TPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKAR 331 (456)
Q Consensus 252 ~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~ 331 (456)
.+++..++.+.++.+...+..|..+|..++..+. ..+...|++..|++.+-++..+..+..+.++..+-..+..|.-
T Consensus 107 -~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~y 183 (371)
T PF14664_consen 107 -RGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKY 183 (371)
T ss_pred -HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhh
Confidence 2578889999999999999999999999997543 4566789999999999887667888899999999998887775
Q ss_pred HHhcCcHHHHHHHHcCC--------c---hHHHHHHHHHHhhCCHHHHHHHHhh--CcHHHHHHHhhhcCChhHHHHHHH
Q 012813 332 AVRDGGVSVILKKIMDG--------V---HVDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIA 398 (456)
Q Consensus 332 ~v~~g~v~~Lv~lL~~~--------~---~~~~a~~~L~~L~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~A~~ 398 (456)
+...--+..++.-+.+. . ....+..++..+-++=.|--.+... .++..|+..|+... +.+++.-+.
T Consensus 184 l~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~-~~ir~~Ild 262 (371)
T PF14664_consen 184 LRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN-PEIRKAILD 262 (371)
T ss_pred hcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC-HHHHHHHHH
Confidence 54432344444444322 1 2223444444443332222222222 25666666666543 556666666
Q ss_pred HHHHHhcc---------------------------------------------------ChhhHHHHHHhhccHHHHHHH
Q 012813 399 ILHTICLS---------------------------------------------------DRTKWKAMREEESTHGTISKL 427 (456)
Q Consensus 399 ~L~~l~~~---------------------------------------------------~~~~~~~~~~~~g~~~~L~~L 427 (456)
++..+-.- .-.-.-.++.+.|.++.|..+
T Consensus 263 ll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l 342 (371)
T PF14664_consen 263 LLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL 342 (371)
T ss_pred HHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 66555200 001112234477999999999
Q ss_pred hhcC-CHHHHHHHHHHHHHHhc
Q 012813 428 AQDG-TARAKRKATGILERLKR 448 (456)
Q Consensus 428 l~~~-~~~~k~~A~~~L~~l~~ 448 (456)
..+. ++.+..||.-+|..+=+
T Consensus 343 i~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 343 IESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HhcCCCchHHHHHHHHHHHHHH
Confidence 8877 77899999999986643
No 82
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.80 E-value=3.3e-05 Score=73.20 Aligned_cols=62 Identities=19% Similarity=0.450 Sum_probs=45.8
Q ss_pred Cccccccchhh-ccCcc---cC-CCCccccHHHHHHHHhcCCCCCCCCcccccCCC----CcccHHHHHHH
Q 012813 74 EEFKCPLSKEL-MRDPV---IL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTI----LTPNHLIREMI 135 (456)
Q Consensus 74 ~~f~Cpi~~~~-m~dPv---~l-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~----l~~n~~lk~~i 135 (456)
++..||+|+.- ...|- ++ +|||+||++||.++|..+...||.|+.++.... +.++....+.|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence 46789999972 44564 33 699999999999998876778999999987655 34444444433
No 83
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.1e-05 Score=69.04 Aligned_cols=51 Identities=24% Similarity=0.538 Sum_probs=42.9
Q ss_pred ccccccchhhccCcc--cCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCc
Q 012813 75 EFKCPLSKELMRDPV--ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 126 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv--~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~ 126 (456)
-|.||||++-...-| -..|||.||+.||+..+.. ...||.|+..++...+.
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFH 183 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhe
Confidence 389999999987755 4679999999999999997 67999999877765544
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.79 E-value=0.0033 Score=63.37 Aligned_cols=57 Identities=4% Similarity=-0.021 Sum_probs=32.2
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 377 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 377 i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
++.|..+++. +.++..++.+|..+.. ...++.|+.++.+. .+++.|.+.++.+.+..
T Consensus 242 ~~~L~~ll~d---~~vr~~a~~AlG~lg~------------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 242 QAWLRELLQA---AATRREALRAVGLVGD------------VEAAPWCLEAMREP--PWARLAGEAFSLITGMD 298 (410)
T ss_pred HHHHHHHhcC---hhhHHHHHHHHHHcCC------------cchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence 4445555542 3356666666554322 23445565555433 38888888888877643
No 85
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.79 E-value=1.9e-05 Score=50.94 Aligned_cols=39 Identities=51% Similarity=1.094 Sum_probs=35.0
Q ss_pred cccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCC
Q 012813 78 CPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRT 116 (456)
Q Consensus 78 Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~ 116 (456)
|||+.+..++|+++++||.|+..++..|+..+...||++
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999999999999999999999999998546679874
No 86
>PTZ00429 beta-adaptin; Provisional
Probab=97.76 E-value=0.0052 Score=66.47 Aligned_cols=250 Identities=10% Similarity=0.047 Sum_probs=137.1
Q ss_pred hhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 164 DHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 164 ~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
|-+..|-..|.+ +...+.+|++.+........+.. ...+-++.++. +.+.+.+.-..-.|.+.+..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS-------~LF~dVvk~~~------S~d~elKKLvYLYL~~ya~~ 98 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS-------YLFVDVVKLAP------STDLELKKLVYLYVLSTARL 98 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch-------HHHHHHHHHhC------CCCHHHHHHHHHHHHHHccc
Confidence 344556666643 34556677775544433223322 23333455555 45667777676666666554
Q ss_pred cchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHh
Q 012813 243 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 322 (456)
Q Consensus 243 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L 322 (456)
.+....+ ++..|.+=+.++++.+|..|.++|.++-... +. .-+++.+.+.|.+.++-+++.|+.++..+
T Consensus 99 ~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kl 167 (746)
T PTZ00429 99 QPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VL-EYTLEPLRRAVADPDPYVRKTAAMGLGKL 167 (746)
T ss_pred ChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3322211 3455666667777777777777776654311 11 12345566667777788888888888777
Q ss_pred ccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHH
Q 012813 323 CITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL 400 (456)
Q Consensus 323 ~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L 400 (456)
-.... ..+.+.|.++.|.++|.+. .++.+|+.+|..++.....+ .-...+.+..|+..+.. .++..|-..+.+|
T Consensus 168 y~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e-~~EW~Qi~IL~lL 243 (746)
T PTZ00429 168 FHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPE-CNEWGQLYILELL 243 (746)
T ss_pred HhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhc-CChHHHHHHHHHH
Confidence 54332 2233456777777777654 66777888777776532111 11223345556666653 2466666655555
Q ss_pred HHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 401 HTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 401 ~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
.. ..+..-... ...+..+...+++.++.+.-.|..++-.+.
T Consensus 244 ~~---y~P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 244 AA---QRPSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred Hh---cCCCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 33 222111111 134455555566666666666666655554
No 87
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.72 E-value=0.0012 Score=65.17 Aligned_cols=263 Identities=13% Similarity=0.077 Sum_probs=173.9
Q ss_pred hhhhHHHHHHHhcCC---chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHc
Q 012813 162 DRDHFLSLLKKMSAT---LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 238 (456)
Q Consensus 162 ~~~~i~~Lv~~L~~~---~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 238 (456)
..+.+..|++++.+. ..++.+|.+.|-.+.. .+|+..++. .| ...++.+-+. .+.++.+...+.+|.+
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~-~~-~~~Il~lAK~-----~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVAR-IG-LGVILNLAKE-----REPVELARSVAGILEH 248 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhh-cc-chhhhhhhhh-----cCcHHHHHHHHHHHHH
Confidence 346777888888653 3457788888877665 578888877 44 3344444332 3357788888999999
Q ss_pred cccCcc-hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC--ccchhhcccCccHHHHhccccCChhHHHHH
Q 012813 239 LSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEGHQSAMKDV 315 (456)
Q Consensus 239 Ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~--~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a 315 (456)
+-.+.+ ....++..+ ++..++-..+..++.+.++++-+|.|++... ..+..+++..+-+-|..|-.+.+.-.+-.|
T Consensus 249 mFKHSeet~~~Lvaa~-~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAG-GLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HhhhhHHHHHHHHhhc-ccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 988876 456666664 5777777778888999999999999998754 567778887777777777777777778899
Q ss_pred HHHHHHhccCchhhHHHHhcCc---HHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhH
Q 012813 316 ASAIFNLCITHENKARAVRDGG---VSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRN 392 (456)
Q Consensus 316 ~~aL~~L~~~~~~~~~~v~~g~---v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 392 (456)
+.+...|+.+.+.-..+-..|. |.+|+..+.-+.+...+-. ...++ ...-++.||-+|++ .+.
T Consensus 328 ClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd-------~aQG~----~~d~LqRLvPlLdS---~R~ 393 (832)
T KOG3678|consen 328 CLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHD-------YAQGR----GPDDLQRLVPLLDS---NRL 393 (832)
T ss_pred HHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhh-------hhccC----ChHHHHHhhhhhhc---chh
Confidence 9999999998876666655554 4445444433222221100 00010 01136778888873 344
Q ss_pred HHHHHHHHHHHhcc---ChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 393 KENCIAILHTICLS---DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 393 ~~~A~~~L~~l~~~---~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
-..++.+..-.+.. .....-.++.+-|++..|.++..+.++-.-..|..+|+.+..
T Consensus 394 EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 394 EAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred hhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 44555555432221 111112456677899999999887777777888889888764
No 88
>PTZ00429 beta-adaptin; Provisional
Probab=97.71 E-value=0.0081 Score=64.99 Aligned_cols=253 Identities=14% Similarity=0.108 Sum_probs=153.6
Q ss_pred hHHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 165 HFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 165 ~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
.+...++.++++ .+.++-..-.|.+++..+++.... ++..|..-+. +.++.++..|+++|.++-..
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL------aINtl~KDl~------d~Np~IRaLALRtLs~Ir~~- 135 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL------AVNTFLQDTT------NSSPVVRALAVRTMMCIRVS- 135 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH------HHHHHHHHcC------CCCHHHHHHHHHHHHcCCcH-
Confidence 344555555433 344444444455555533332111 2344555555 56899999999999876432
Q ss_pred chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhc
Q 012813 244 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 323 (456)
Q Consensus 244 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 323 (456)
.+++ .+++.+.+.|.+.++-+|+.|+-++..+-..+. ..+.+.|.++.|.++|.+.++.+..+|+.+|..++
T Consensus 136 ----~i~e--~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 136 ----SVLE--YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred ----HHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 2332 256667888889999999999999999865433 34456789999999999999999999999999997
Q ss_pred cCchhhHHHHhcCcHHHHHHHHcCC-c-hHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHH
Q 012813 324 ITHENKARAVRDGGVSVILKKIMDG-V-HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 401 (456)
Q Consensus 324 ~~~~~~~~~v~~g~v~~Lv~lL~~~-~-~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~ 401 (456)
........ ...+.+..|+..|.+. . .+-..+.+|.... |...... ...+..+...+++. ++.+.-.|++++.
T Consensus 208 ~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il 281 (746)
T PTZ00429 208 DYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVA 281 (746)
T ss_pred HhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 65433221 2334555666666532 2 2444444443321 2211111 13466677777765 4888888999988
Q ss_pred HHhccC-hhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 402 TICLSD-RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 402 ~l~~~~-~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
++.... +...+.+. .....+++.|+ ++++.+|--+..-+..+.
T Consensus 282 ~l~~~~~~~~~~~~~--~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 282 NLASRCSQELIERCT--VRVNTALLTLS-RRDAETQYIVCKNIHALL 325 (746)
T ss_pred HhcCcCCHHHHHHHH--HHHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence 887653 22222222 12335566663 455567766665555443
No 89
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=1.5e-05 Score=75.51 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=56.8
Q ss_pred CCCccccccchhhccCcccCC-CCccccHHHHHHHHhcCCCCCCCCccccc-CCCCcccHHHHHHHHHH
Q 012813 72 CPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLS-HTILTPNHLIREMISQW 138 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~-~~~l~~n~~lk~~i~~w 138 (456)
+-.+|.||||..+++--.+++ |+|.||+.||-.-+..++..||.||+.+. ...|.++..+-.+|.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 455899999999999999888 99999999999999988899999999974 55777776666666653
No 90
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.57 E-value=0.0017 Score=60.25 Aligned_cols=182 Identities=14% Similarity=0.085 Sum_probs=114.6
Q ss_pred hcCCHHHHHHHHHHHHHhccCC---ccchhhcc--cCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcH
Q 012813 264 RSGTIETRSNAAAALFTLSALD---SNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGV 338 (456)
Q Consensus 264 ~~~~~~~~~~aa~aL~~Ls~~~---~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v 338 (456)
.+.+.+.|..+..-|..+.... +....+.. ...+..++..+.+....+...|+.++..|+..-.....-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567899999999998887655 33333332 256677888888777889999999999998765544333334578
Q ss_pred HHHHHHHcCC--chHHHHHHHHHHhhCCHH-HHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccCh---hhHH
Q 012813 339 SVILKKIMDG--VHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR---TKWK 412 (456)
Q Consensus 339 ~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~---~~~~ 412 (456)
|.|++.+.++ .+.+.|..+|..++.+-. ....+ ++.+...+.+ .++.++..++..|..+....+ ....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 9999999876 567888888988887533 11111 2344455554 459999999999998876554 2211
Q ss_pred HHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 012813 413 AMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 451 (456)
Q Consensus 413 ~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~ 451 (456)
.-..-..+++.+.+.+.++++.+|+.|..++..+.++.+
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 111113577888889999999999999999999977654
No 91
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0018 Score=66.56 Aligned_cols=269 Identities=13% Similarity=0.108 Sum_probs=176.7
Q ss_pred hhHHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhh--hhcc-CCchhhhhhccccccccCCCChhhHHHHHHHHHcc
Q 012813 164 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRAL--FGES-HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 239 (456)
Q Consensus 164 ~~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~--i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L 239 (456)
..++.|.+.|.+. ...++-|..+|..++.++.+.-.. ..+. .-.+|.++.+.+ +.++.++..|+..+...
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~------h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK------HPSPKIRSHAVGCVNQF 201 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh------CCChhHHHHHHhhhhhe
Confidence 4677888888654 467888999999999876554222 1110 136788888888 56899999999988665
Q ss_pred ccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHH
Q 012813 240 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 319 (456)
Q Consensus 240 s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL 319 (456)
-.... ...+..-..++..|..+-.+.++++|++.+.+|..|......|..=--.++|+-++..-++.+.++.-.|+...
T Consensus 202 i~~~~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 202 IIIQT-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred eecCc-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 44332 22222222356666666667789999999999998876554333222257888888888888999999999999
Q ss_pred HHhccCchhhHHHHhc--CcHHHHHHHHcCC-------------------------------------------------
Q 012813 320 FNLCITHENKARAVRD--GGVSVILKKIMDG------------------------------------------------- 348 (456)
Q Consensus 320 ~~L~~~~~~~~~~v~~--g~v~~Lv~lL~~~------------------------------------------------- 348 (456)
..++..+--+..+... ..||.|++-|.-.
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 9999988444433332 6788887655310
Q ss_pred ---------chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhh---cCChhHHHHHHHHHHHHhccChhhHHHHHH
Q 012813 349 ---------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE---STCDRNKENCIAILHTICLSDRTKWKAMRE 416 (456)
Q Consensus 349 ---------~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~ 416 (456)
+++..++++|..|+ .+.....++.++-+++. ...=.+||.++-+|..++.+.- +.++.
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p 430 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVP 430 (885)
T ss_pred ccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhccc
Confidence 01111222222222 22333345555555543 1224679999999999987542 23332
Q ss_pred h-hccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 417 E-ESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 417 ~-~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
. ...++.|+.++.+..+-+|.-.+|.|..++++
T Consensus 431 ~LpeLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 431 HLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred chHHHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 1 23677888888888888999999999988875
No 92
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.56 E-value=0.0074 Score=60.16 Aligned_cols=224 Identities=11% Similarity=0.113 Sum_probs=152.7
Q ss_pred ChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHh
Q 012813 225 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID 302 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~ 302 (456)
+.+++..+.++++++..+.+.-..+...+ .--.++.-|... +..-|+.|...++.+...+.+... ...|++..|+.
T Consensus 38 ~~~vraa~yRilRy~i~d~~~l~~~~~l~-id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralva 115 (371)
T PF14664_consen 38 SKEVRAAGYRILRYLISDEESLQILLKLH-IDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVA 115 (371)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHcC-CchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHH
Confidence 48999999999999999988888777754 444456666543 466789999999888766443333 35689999999
Q ss_pred ccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHH
Q 012813 303 LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCM 380 (456)
Q Consensus 303 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~L 380 (456)
+....+...+..|+.+|..|+..+. ..++.+|++..|++.+.++ ...+..+.++..+-.+|..|+.+...--+..+
T Consensus 116 iae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l 193 (371)
T PF14664_consen 116 IAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESL 193 (371)
T ss_pred HHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHH
Confidence 9999888999999999999987542 3456889999999999876 67788899999999999999877543334444
Q ss_pred HHHhhhc------CCh--hHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhc
Q 012813 381 LRIIRES------TCD--RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 452 (456)
Q Consensus 381 v~ll~~~------~~~--~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~~ 452 (456)
+.-+... .+. ..-..+..++..+-+.=++-.--......++..|+..++..++++++....++..+=+..++
T Consensus 194 ~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 194 LAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred HHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 4333221 111 12223333333332222211101111114566677778888888888888888766544443
No 93
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.042 Score=54.39 Aligned_cols=245 Identities=13% Similarity=0.168 Sum_probs=164.3
Q ss_pred hhhhhHHHHHHHhcCC-chhHHHHHHHHHHHhhcC-----ch----hhhhhhccCCchhhhhhccccccccCCCChhhHH
Q 012813 161 ADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRM-----PS----FRALFGESHDAIPQLLSPLSESKCENGINPNLQE 230 (456)
Q Consensus 161 ~~~~~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~-----~~----~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~ 230 (456)
.+..+++.|++.|+.. .+.-...+..|..|+..+ .+ .-..+++ .+.++.|+.-+....-++.+......
T Consensus 122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaLLvqnveRLdEsvkeea~gv~ 200 (536)
T KOG2734|consen 122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLALLVQNVERLDESVKEEADGVH 200 (536)
T ss_pred HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHHHHHHHHHhhhcchhhhhhhH
Confidence 3456788999999754 555556666777777642 12 1234556 67788887776543211122334566
Q ss_pred HHHHHHHccccCcc-hhHHHhcCCCCHHHHHHHHhcC-C-HHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhcccc
Q 012813 231 DVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSG-T-IETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDE 306 (456)
Q Consensus 231 ~a~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~-~-~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~ 306 (456)
+++..+-|+...++ ....+++. |.+.-|+.-+... . ..-...|...|.-+-.+. +|+...+...+|..|++-+.-
T Consensus 201 ~~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 201 NTLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence 77788888866554 66677776 4555555434332 3 345666777777666654 588889998889998887742
Q ss_pred ---C------ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC-chHHHHHHHHHHhhCCH---HHHHHHHh
Q 012813 307 ---G------HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLSTNH---RAVEEIGD 373 (456)
Q Consensus 307 ---~------~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~~~---~~~~~i~~ 373 (456)
. ..+..++...+|+.+...++|+.+++...+++.+.-+++.. .....++.+|-....++ ++...+++
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe 359 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVE 359 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 1 23567788888888888999999999988888777777765 56778999999988875 46677888
Q ss_pred hCcHHHHHHHhh-h--------cCChhHHHHHHHHHHHHhccC
Q 012813 374 LGGVSCMLRIIR-E--------STCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 374 ~g~i~~Lv~ll~-~--------~~~~~~~~~A~~~L~~l~~~~ 407 (456)
.+|...+..+.. . ......-++-+.+|+.+-.+.
T Consensus 360 ~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 360 ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 888877764433 2 112445677777887776543
No 94
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.48 E-value=0.017 Score=56.76 Aligned_cols=226 Identities=14% Similarity=0.092 Sum_probs=155.6
Q ss_pred chhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcC------CCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012813 207 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET------PMVIPLLMDALRSGTIETRSNAAAALFT 280 (456)
Q Consensus 207 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~------~~~i~~Lv~lL~~~~~~~~~~aa~aL~~ 280 (456)
.+..++.+++.- ..++....++..+-.+-..+..+..+... .-..+..+.+|..++.-...-+.+.|..
T Consensus 66 ~v~~fi~LlS~~-----~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~ 140 (442)
T KOG2759|consen 66 YVKTFINLLSHI-----DKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSK 140 (442)
T ss_pred HHHHHHHHhchh-----hhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHH
Confidence 456677777632 23455555666555554444444433321 1124567888888888777778888888
Q ss_pred hccCCccchhhcccC-ccHHHHhcccc-CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc-CC---chHHHH
Q 012813 281 LSALDSNKEVIGKSG-ALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM-DG---VHVDEL 354 (456)
Q Consensus 281 Ls~~~~~~~~i~~~G-~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~-~~---~~~~~a 354 (456)
++.....+...++.. -...|-..+.+ .+.+...-|+++|-.+...++-|..++.++++..++..+. .. .++-..
T Consensus 141 la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqs 220 (442)
T KOG2759|consen 141 LACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQS 220 (442)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHH
Confidence 887665443333221 12233344444 5667788899999999999999999999999999999994 32 678889
Q ss_pred HHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccCh------hhHHHHHHhhccHHHHHHHh
Q 012813 355 LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR------TKWKAMREEESTHGTISKLA 428 (456)
Q Consensus 355 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~------~~~~~~~~~~g~~~~L~~Ll 428 (456)
+-++|.|+.++...+.+...+.|+.|.++++.+.-+++-+-++.++.|++...+ .....++. .++...+..|.
T Consensus 221 ifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~ 299 (442)
T KOG2759|consen 221 IFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLE 299 (442)
T ss_pred HHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHH
Confidence 999999999998888887778999999999976547788889999999998774 22334443 36666666665
Q ss_pred hcC--CHHHHHH
Q 012813 429 QDG--TARAKRK 438 (456)
Q Consensus 429 ~~~--~~~~k~~ 438 (456)
+.+ ++++..-
T Consensus 300 ~rkysDEDL~~d 311 (442)
T KOG2759|consen 300 ERKYSDEDLVDD 311 (442)
T ss_pred hcCCCcHHHHHH
Confidence 554 5544433
No 95
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.47 E-value=0.00044 Score=53.68 Aligned_cols=84 Identities=26% Similarity=0.358 Sum_probs=66.7
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHh
Q 012813 256 IPLLMDAL-RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR 334 (456)
Q Consensus 256 i~~Lv~lL-~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~ 334 (456)
+|.|++.| +++++.+|..++.+|.++ ....+++.|+.+++++++.++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57889988 777899999999988833 33367999999999999999999999999872 2
Q ss_pred cCcHHHHHHHHcCC---chHHHHHHHHH
Q 012813 335 DGGVSVILKKIMDG---VHVDELLAILA 359 (456)
Q Consensus 335 ~g~v~~Lv~lL~~~---~~~~~a~~~L~ 359 (456)
..+++.|.+++.++ .++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34889999999865 34666777663
No 96
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.021 Score=61.80 Aligned_cols=252 Identities=15% Similarity=0.149 Sum_probs=158.2
Q ss_pred HHHHHHHhc--CCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 166 FLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 166 i~~Lv~~L~--~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
++.+...+. .....|.-|+..+..++. +..+-.-++. .|.+..|+.+|.+ -|..++.++.+|..|+...
T Consensus 1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~-~~vL~~LL~lLHS-------~PS~R~~vL~vLYAL~S~~ 1843 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLAT-CNVLTTLLTLLHS-------QPSMRARVLDVLYALSSNG 1843 (2235)
T ss_pred cHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHh-hhHHHHHHHHHhc-------ChHHHHHHHHHHHHHhcCc
Confidence 334444442 335677788888877777 5667677787 7888889999874 4788999999999999999
Q ss_pred chhHHHhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCc--cchhh--cc-------------------------
Q 012813 244 NNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDS--NKEVI--GK------------------------- 293 (456)
Q Consensus 244 ~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~aL~~Ls~~~~--~~~~i--~~------------------------- 293 (456)
+......+.|+.+ -+.+++-. .++..|..++..+..|....- .|..| ++
T Consensus 1844 ~i~keA~~hg~l~-yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~ 1922 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLM-YILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTS 1922 (2235)
T ss_pred HHHHHHHhcCchh-hhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccC
Confidence 8777777766533 34544433 346666677777666654321 01100 00
Q ss_pred -------------------------------------------------------------------------------c
Q 012813 294 -------------------------------------------------------------------------------S 294 (456)
Q Consensus 294 -------------------------------------------------------------------------------~ 294 (456)
.
T Consensus 1923 EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~ 2002 (2235)
T KOG1789|consen 1923 ENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLT 2002 (2235)
T ss_pred CCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHH
Confidence 0
Q ss_pred CccHHHHhccccCCh--hHHHHHHHHHHHhccCc-hhhHHHHhcCcHHHHHHHHcC--CchHHHHHHHHHHhhCCHHHHH
Q 012813 295 GALKPLIDLLDEGHQ--SAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTNHRAVE 369 (456)
Q Consensus 295 G~i~~Lv~lL~~~~~--~~~~~a~~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~--~~~~~~a~~~L~~L~~~~~~~~ 369 (456)
|.++.+..++...++ .....-..++..|...+ .-...+-..|-+|.++..+.- ...-..|+.+|..|+.+.-..+
T Consensus 2003 ~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~ 2082 (2235)
T KOG1789|consen 2003 ELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCD 2082 (2235)
T ss_pred HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHH
Confidence 111111112221111 11111122233333333 333444456889999888763 3566889999999999999999
Q ss_pred HHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhH-HHHHHhhccHHHHHHHhhc
Q 012813 370 EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKW-KAMREEESTHGTISKLAQD 430 (456)
Q Consensus 370 ~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~-~~~~~~~g~~~~L~~Ll~~ 430 (456)
++....++..++..|+.. +..---|+.+|..+........ .+.+ ..|.++.|+.|+..
T Consensus 2083 AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~L-K~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQML-KCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHh-ccCcHHHHHHHhcc
Confidence 998877777788877753 4445578889988887665433 3444 46999999999743
No 97
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=7.2e-05 Score=68.33 Aligned_cols=52 Identities=23% Similarity=0.391 Sum_probs=45.5
Q ss_pred CC-CccccccchhhccCcccCCCCccccHHHHHH-HHhcCCCCCCCCcccccCC
Q 012813 72 CP-EEFKCPLSKELMRDPVILASGQTFDRPYIQR-WLKAGNRTCPRTQQVLSHT 123 (456)
Q Consensus 72 ~p-~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~-~~~~~~~~~P~~~~~l~~~ 123 (456)
+| .+|.|+||.+.+.+|+-+||||.||=.||-. |.......||.||+...+.
T Consensus 211 ip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 211 IPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 44 5899999999999999999999999999988 8877567799999876554
No 98
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.026 Score=55.73 Aligned_cols=229 Identities=18% Similarity=0.220 Sum_probs=161.8
Q ss_pred HHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc------h----hHHHh
Q 012813 181 TEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN------N----KKLVA 250 (456)
Q Consensus 181 ~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~------~----~~~i~ 250 (456)
...+..+..++. -|.....+++ .++|+.|+.+|. +++.++....+..|..|+-.+- . ...++
T Consensus 102 hd~IQ~mhvlAt-~PdLYp~lve-ln~V~slL~LLg------HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLv 173 (536)
T KOG2734|consen 102 HDIIQEMHVLAT-MPDLYPILVE-LNAVQSLLELLG------HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALV 173 (536)
T ss_pred HHHHHHHHhhhc-ChHHHHHHHH-hccHHHHHHHhc------CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHH
Confidence 346666667777 5777778888 899999999999 6788999999999998864431 1 22334
Q ss_pred cCCCCHHHHHHHHhcCCH------HHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccC--ChhHHHHHHHHHHH
Q 012813 251 ETPMVIPLLMDALRSGTI------ETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAIFN 321 (456)
Q Consensus 251 ~~~~~i~~Lv~lL~~~~~------~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~a~~aL~~ 321 (456)
+ +++++.|+.-++.=+. ....++.+.+-|+...+ +....+++.|.+.-|+.-+... -..-+..|...|.-
T Consensus 174 d-g~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLai 252 (536)
T KOG2734|consen 174 D-GQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAI 252 (536)
T ss_pred h-ccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHH
Confidence 3 5688888877754332 34556667777877654 5677777888877777644332 22345677777777
Q ss_pred hccCc-hhhHHHHhcCcHHHHHHHHc-----CC------chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCC
Q 012813 322 LCITH-ENKARAVRDGGVSVILKKIM-----DG------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC 389 (456)
Q Consensus 322 L~~~~-~~~~~~v~~g~v~~Lv~lL~-----~~------~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 389 (456)
+-.+. +++.......+|..+++-+. ++ ...+.-...|+.+...+++|+.+....|++...-+++. .
T Consensus 253 llq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-K- 330 (536)
T KOG2734|consen 253 LLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-K- 330 (536)
T ss_pred HhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-H-
Confidence 76554 58888888899999998875 32 23455566666666689999999988888877777775 2
Q ss_pred hhHHHHHHHHHHHHhccCh--hhHHHHHHhhcc
Q 012813 390 DRNKENCIAILHTICLSDR--TKWKAMREEEST 420 (456)
Q Consensus 390 ~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~g~ 420 (456)
...+-.|+++|-....+.+ ..|..+++..|.
T Consensus 331 k~sr~SalkvLd~am~g~~gt~~C~kfVe~lGL 363 (536)
T KOG2734|consen 331 KVSRGSALKVLDHAMFGPEGTPNCNKFVEILGL 363 (536)
T ss_pred HHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhH
Confidence 5667789999998888766 566677765443
No 99
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.36 E-value=0.00014 Score=54.58 Aligned_cols=47 Identities=32% Similarity=0.666 Sum_probs=36.1
Q ss_pred CCCCCCccccccchhhccCc-------------ccCCCCccccHHHHHHHHhcCCCCCCCCc
Q 012813 69 TVSCPEEFKCPLSKELMRDP-------------VILASGQTFDRPYIQRWLKAGNRTCPRTQ 117 (456)
Q Consensus 69 ~~~~p~~f~Cpi~~~~m~dP-------------v~l~~g~~~~r~~I~~~~~~~~~~~P~~~ 117 (456)
.++++++- |+||.+.|.|| ++.+|||.|-..||.+|+.. ..+||+||
T Consensus 14 ~~~~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 14 SWDIADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp EESSCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred eecCcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 34455554 99999999554 23479999999999999987 56999986
No 100
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.35 E-value=0.00015 Score=48.61 Aligned_cols=40 Identities=20% Similarity=0.470 Sum_probs=33.9
Q ss_pred cccchhhc---cCcccCCCCccccHHHHHHHHhcCCCCCCCCcc
Q 012813 78 CPLSKELM---RDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQ 118 (456)
Q Consensus 78 Cpi~~~~m---~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~ 118 (456)
||++.+.+ ..|++++|||+|+..+|.++. .....||++++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88888888 347899999999999999999 33678999974
No 101
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00029 Score=69.79 Aligned_cols=72 Identities=22% Similarity=0.444 Sum_probs=57.9
Q ss_pred CCCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCC-----CCcccHHHHHHHHHHHHH
Q 012813 69 TVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT-----ILTPNHLIREMISQWCRS 141 (456)
Q Consensus 69 ~~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~-----~l~~n~~lk~~i~~w~~~ 141 (456)
...++.+|-|-||...+.+||++||||+||+.||.+-+.. ...||.|+.++... ...+|+.+++.|..|+..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 4457999999999999999999999999999999996665 67899998887531 223466677788877653
No 102
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.24 E-value=0.00077 Score=52.28 Aligned_cols=87 Identities=30% Similarity=0.423 Sum_probs=68.2
Q ss_pred hhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCcc
Q 012813 208 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN 287 (456)
Q Consensus 208 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~ 287 (456)
|+.|+..|.+ +.++.++..|+.+|..+-. ..++|.|+.+++++++.+|..++.+|..+
T Consensus 1 i~~L~~~l~~-----~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i------ 58 (88)
T PF13646_consen 1 IPALLQLLQN-----DPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRI------ 58 (88)
T ss_dssp HHHHHHHHHT-----SSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHhc-----CCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh------
Confidence 5678888832 5689999999999985421 13689999999999999999999999976
Q ss_pred chhhcccCccHHHHhccccC-ChhHHHHHHHHHH
Q 012813 288 KEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIF 320 (456)
Q Consensus 288 ~~~i~~~G~i~~Lv~lL~~~-~~~~~~~a~~aL~ 320 (456)
+...+++.|.+++.++ +..++..|+.+|+
T Consensus 59 ----~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 ----GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3456899999999875 4556788888874
No 103
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.02 Score=58.18 Aligned_cols=266 Identities=16% Similarity=0.135 Sum_probs=171.4
Q ss_pred chhHHHHHHHHHHHhhcCchhhh-hhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCC
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRA-LFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMV 255 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~ 255 (456)
......++..|-.+-++-..-+. .|.= .+.||.|-.-+. ..++..+.-.+..|..|-.-++ ...+.--+..
T Consensus 138 d~~V~~~aeLLdRLikdIVte~~~tFsL-~~~ipLL~eriy------~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ 209 (675)
T KOG0212|consen 138 DQNVRGGAELLDRLIKDIVTESASTFSL-PEFIPLLRERIY------VINPMTRQFLVSWLYVLDSVPD-LEMISYLPSL 209 (675)
T ss_pred ccccccHHHHHHHHHHHhccccccccCH-HHHHHHHHHHHh------cCCchHHHHHHHHHHHHhcCCc-HHHHhcchHH
Confidence 33444555555555443211111 2222 355555555555 4578889888888887755554 2222223347
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc-cCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHh
Q 012813 256 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR 334 (456)
Q Consensus 256 i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~ 334 (456)
.+.|..+|.+.+.++|..+-.+|.++-..-.++....+ ...++.|+.-+.+.++..+..|+.-|..+..-........-
T Consensus 210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~ 289 (675)
T KOG0212|consen 210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYL 289 (675)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhh
Confidence 78899999999999998887777665432223333222 45788999999999999999998888877765544333334
Q ss_pred cCcHHHHHHHHcCC---chHHHHH---HHHHHhhCCHHHHHHHHhhC-cHHHHHHHhhhcCChhHHHHHHHHHHHHhccC
Q 012813 335 DGGVSVILKKIMDG---VHVDELL---AILAMLSTNHRAVEEIGDLG-GVSCMLRIIRESTCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 335 ~g~v~~Lv~lL~~~---~~~~~a~---~~L~~L~~~~~~~~~i~~~g-~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 407 (456)
.|++..++..+.+. ..++.+. ..|..+++.+...++ ++.| .+..|.+.+.++ ...++-.++.-+..|-...
T Consensus 290 s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 290 SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhC
Confidence 56677777777654 2344433 345556666655555 4554 466677777755 4889999999888888877
Q ss_pred hhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhccC
Q 012813 408 RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNLTH 454 (456)
Q Consensus 408 ~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~~~~ 454 (456)
+++ -..-.......|.+-+.+.++.+...+..+|.+++...+..|
T Consensus 368 p~q--l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~ 412 (675)
T KOG0212|consen 368 PGQ--LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPN 412 (675)
T ss_pred cch--hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccccc
Confidence 764 333334556666666777788899999999999987665543
No 104
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00012 Score=76.43 Aligned_cols=53 Identities=21% Similarity=0.437 Sum_probs=48.4
Q ss_pred ccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcc
Q 012813 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTP 127 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~ 127 (456)
-++||+|.+-.+|-|++-|||.||-.||+..+......||.|+.++...++.+
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 47999999999999999999999999999999877889999999998877655
No 105
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.20 E-value=0.0039 Score=61.72 Aligned_cols=169 Identities=15% Similarity=0.178 Sum_probs=124.5
Q ss_pred CCHHHHHHHHhcCCHHH--HHHHHHHHHHhccCCccchhhcccCccHHHHhcccc-CChhHHHHHHHHHHHhccCc-hhh
Q 012813 254 MVIPLLMDALRSGTIET--RSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITH-ENK 329 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~~~--~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~-~~~ 329 (456)
|.+..|++++..++.+. |..|+..|-.+.. .+|+..+.+-| +..++.+-+. ..++.....+..|.++-.+. +.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~ 257 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETC 257 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHH
Confidence 56888999999998654 8888887776544 56777777765 4455555443 35678888999999998755 578
Q ss_pred HHHHhcCcHHHHHHHHc--CCchHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhc
Q 012813 330 ARAVRDGGVSVILKKIM--DGVHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 405 (456)
Q Consensus 330 ~~~v~~g~v~~Lv~lL~--~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 405 (456)
..+++.|++..++--.+ ++.+..+|.-+|.|++.+ .+++..+++..+..-|.-+..+. ++.++-+|+-+...|+.
T Consensus 258 ~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del~R~~AClAV~vlat 336 (832)
T KOG3678|consen 258 QRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DELLRLHACLAVAVLAT 336 (832)
T ss_pred HHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHHHHHHHHHHHhhhhh
Confidence 99999999998876555 347888999999999875 67888898888788887776654 48889999999999988
Q ss_pred cChhhHHHHHHhhccHHHHHHH
Q 012813 406 SDRTKWKAMREEESTHGTISKL 427 (456)
Q Consensus 406 ~~~~~~~~~~~~~g~~~~L~~L 427 (456)
..+-. ..++..|-+..+--+
T Consensus 337 ~KE~E--~~VrkS~TlaLVEPl 356 (832)
T KOG3678|consen 337 NKEVE--REVRKSGTLALVEPL 356 (832)
T ss_pred hhhhh--HHHhhccchhhhhhh
Confidence 65422 344444444333333
No 106
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0082 Score=61.64 Aligned_cols=222 Identities=13% Similarity=0.126 Sum_probs=146.9
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHcccc-CcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 283 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~ 283 (456)
++.++.|-.+|.+.+ +....+++.|..+...+-. .+.... ..++|.++.-+.......+.+++..|..++.
T Consensus 212 Pyiv~~lp~il~~~~---d~~~~Vr~Aa~~a~kai~~~~~~~aV-----K~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 212 PYIVPILPSILTNFG---DKINKVREAAVEAAKAIMRCLSAYAV-----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred chHHhhHHHHHHHhh---ccchhhhHHHHHHHHHHHHhcCcchh-----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 677777777777554 3345666655554443311 111111 1244555544444578889999999998877
Q ss_pred CCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCc-hHHHHHHHHHHhh
Q 012813 284 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV-HVDELLAILAMLS 362 (456)
Q Consensus 284 ~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~-~~~~a~~~L~~L~ 362 (456)
..+......-..+||.|.+.|.+..+++++.+..+|..++.--+|.. |. -.+|.|++-+.++. -...++..|..-.
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~--~~ip~Lld~l~dp~~~~~e~~~~L~~tt 360 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQ--KIIPTLLDALADPSCYTPECLDSLGATT 360 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HH--HHHHHHHHHhcCcccchHHHHHhhccee
Confidence 66656666667899999999999999999999999999987666554 21 26789999998885 5666666555432
Q ss_pred CCHHHHHHHHhhCcHHHHHHHhhhc---CChhHHHHHHHHHHHHhccCh--hhHHHHHHhhccHHHHHHHhhcCCHHHHH
Q 012813 363 TNHRAVEEIGDLGGVSCMLRIIRES---TCDRNKENCIAILHTICLSDR--TKWKAMREEESTHGTISKLAQDGTARAKR 437 (456)
Q Consensus 363 ~~~~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~ 437 (456)
.-.. ++.-.+..++.+++++ .+...++.++.+.+|+|.--+ ......+ ...++-|...+.+..|.+|.
T Consensus 361 FV~~-----V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~~PEvR~ 433 (569)
T KOG1242|consen 361 FVAE-----VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDAVPEVRA 433 (569)
T ss_pred eeee-----ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCCChhHHH
Confidence 2111 2223455555665543 346778999999999998653 2222333 34556666667777889999
Q ss_pred HHHHHHH
Q 012813 438 KATGILE 444 (456)
Q Consensus 438 ~A~~~L~ 444 (456)
-|+.+|.
T Consensus 434 vaarAL~ 440 (569)
T KOG1242|consen 434 VAARALG 440 (569)
T ss_pred HHHHHHH
Confidence 9998883
No 107
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.20 E-value=0.00022 Score=67.29 Aligned_cols=66 Identities=17% Similarity=0.416 Sum_probs=52.4
Q ss_pred CCCCccccccchhhccCcccCC-CCccccHHHHHHHHhcCCCCCCCCcccccCC----CCcccHHHHHHHHH
Q 012813 71 SCPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT----ILTPNHLIREMISQ 137 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~----~l~~n~~lk~~i~~ 137 (456)
++=.+.+|++|+.+|.|+.++. |=|||||+||-+|+.. ..+||.|...+... .+.++..|+..+..
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 3455889999999999999887 9999999999999998 78999998766443 35555666555543
No 108
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.19 E-value=0.00033 Score=45.74 Aligned_cols=40 Identities=30% Similarity=0.485 Sum_probs=36.0
Q ss_pred CccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhcc
Q 012813 285 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 324 (456)
Q Consensus 285 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 324 (456)
++++..+.+.|+++.|+++|.++++++++.|+++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3477788899999999999999899999999999999973
No 109
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.003 Score=63.59 Aligned_cols=196 Identities=13% Similarity=0.089 Sum_probs=142.1
Q ss_pred HHHHHHHccccCcc-hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CCccchhhcccCccHHHHhccccCC
Q 012813 231 DVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGH 308 (456)
Q Consensus 231 ~a~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~-~~~~~~~i~~~G~i~~Lv~lL~~~~ 308 (456)
.++..|..++..-. -|.-+... .+...|+++|..+...+.-.+...++|+.. ....+..+.+.|.|..|++++.+.+
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~-~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDY-PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhcccc-chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 34445555555443 34555554 478889999988776666677788888876 4455778889999999999999888
Q ss_pred hhHHHHHHHHHHHhccCch--hhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH----HHHHHHHhh----Cc
Q 012813 309 QSAMKDVASAIFNLCITHE--NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH----RAVEEIGDL----GG 376 (456)
Q Consensus 309 ~~~~~~a~~aL~~L~~~~~--~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~----~~~~~i~~~----g~ 376 (456)
...+.+..|.|++|--+.+ .+-+....-++..++++..++ .+++.++.+|.|+.++. +.++.+... -.
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 8899999999999986654 345556777889999999887 78999999999998742 233322222 13
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh
Q 012813 377 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA 428 (456)
Q Consensus 377 i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll 428 (456)
...|++.++.- +|...+..+..|.+++..+.+...-+++....+..+.+++
T Consensus 567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 567 FKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 55677777754 4777777899999998888766555666656666666654
No 110
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.13 E-value=0.00033 Score=70.28 Aligned_cols=66 Identities=24% Similarity=0.459 Sum_probs=55.2
Q ss_pred CCCccccccchhhccCccc-CCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCccc-HHHHHHHHHH
Q 012813 72 CPEEFKCPLSKELMRDPVI-LASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN-HLIREMISQW 138 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~-l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n-~~lk~~i~~w 138 (456)
+.+++.||+|..++.||+. +.|||.||+.||..|+.. +..||.+++++......++ ...++.+..|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 5667999999999999998 489999999999999998 8899999998876665553 3456666655
No 111
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.12 E-value=0.021 Score=58.51 Aligned_cols=264 Identities=13% Similarity=0.197 Sum_probs=163.7
Q ss_pred HHHHHHHhhcCchhhhhhhccCCchhhhhhcccccc----ccCCCChhhHHHHHHHHHccccCcc-hhHHHhcCCCCHHH
Q 012813 184 AKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESK----CENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL 258 (456)
Q Consensus 184 ~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~----~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~~i~~ 258 (456)
+..|+.+++ ++.+...+.. ..++..|+..-.=.. .....+..+..+|++.|.|+-.... .|..+++. +..+.
T Consensus 2 L~~LRiLsR-d~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~-~~~~~ 78 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDL-GLAEK 78 (446)
T ss_pred HHHHHHHcc-Ccccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHc-CcHHH
Confidence 456667777 4555555555 456666655541000 0114578999999999999988776 45555555 57788
Q ss_pred HHHHHhcC-----CHHHHHHHHHHHHHhccC-Cccchhhc-ccCccHHHHhcccc-----------------CChhHHHH
Q 012813 259 LMDALRSG-----TIETRSNAAAALFTLSAL-DSNKEVIG-KSGALKPLIDLLDE-----------------GHQSAMKD 314 (456)
Q Consensus 259 Lv~lL~~~-----~~~~~~~aa~aL~~Ls~~-~~~~~~i~-~~G~i~~Lv~lL~~-----------------~~~~~~~~ 314 (456)
++..|+.. +.+..-...+.|+=++.. .+.+..+. +.+++..|+..|.. .+..+...
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 99999877 678888888888877753 35555555 45788888776632 13456778
Q ss_pred HHHHHHHhccCchhhHHHHhcCcHHHHHHHHc-------CC----chHHHHHHHHHHhhCC-HHH-------HHHH----
Q 012813 315 VASAIFNLCITHENKARAVRDGGVSVILKKIM-------DG----VHVDELLAILAMLSTN-HRA-------VEEI---- 371 (456)
Q Consensus 315 a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~-------~~----~~~~~a~~~L~~L~~~-~~~-------~~~i---- 371 (456)
++++++|+.........-...+.++.|+.++. .. ....+++.+|.++-.. .+. ...+
T Consensus 159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence 89999999876543332122344555554432 11 4567777888777321 111 1111
Q ss_pred HhhCcHHHHHHHhhhc----CC---hhHHHHHHHHHHHHhccChhhHHHHHH---------------hhccHHHHHHHhh
Q 012813 372 GDLGGVSCMLRIIRES----TC---DRNKENCIAILHTICLSDRTKWKAMRE---------------EESTHGTISKLAQ 429 (456)
Q Consensus 372 ~~~g~i~~Lv~ll~~~----~~---~~~~~~A~~~L~~l~~~~~~~~~~~~~---------------~~g~~~~L~~Ll~ 429 (456)
.....+..|+.+|... .. +..-..-+.+|..++..++...+.+.. ....-..|++|+.
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 1122577777777642 11 123344566777777766443222222 2235567888888
Q ss_pred cCCHHHHHHHHHHHHHHhcch
Q 012813 430 DGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 430 ~~~~~~k~~A~~~L~~l~~~~ 450 (456)
+..+.+|..++.+|-.||+-.
T Consensus 319 ~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCCchHHHHHHHHHHHHHhhh
Confidence 877899999999999998644
No 112
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.06 E-value=0.029 Score=57.59 Aligned_cols=231 Identities=18% Similarity=0.164 Sum_probs=151.0
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc-chhHHHhcCCCC
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD-NNKKLVAETPMV 255 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~~ 255 (456)
.....+|+++|.|+.-.++..|..+.+ .|..+.++..|+..... +.+.++.--..++|+-++... ..+..++...++
T Consensus 46 ~~v~~EALKCL~N~lf~s~~aR~~~~~-~~~~~~l~~~Lk~~~~~-~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~ 123 (446)
T PF10165_consen 46 PDVSREALKCLCNALFLSPSARQIFVD-LGLAEKLCERLKNYSDS-SQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHG 123 (446)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Confidence 567789999999999999999999999 89999999999865320 125677777888887776544 567777776666
Q ss_pred HHHHHHHHhc-----------------CCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcccc---------CCh
Q 012813 256 IPLLMDALRS-----------------GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE---------GHQ 309 (456)
Q Consensus 256 i~~Lv~lL~~-----------------~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~---------~~~ 309 (456)
+..|+..|.. ........+..+++|+.........-...+.++.|+.+|.. ...
T Consensus 124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~ 203 (446)
T PF10165_consen 124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLD 203 (446)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcch
Confidence 7767666531 02344566778899998654333221223444555544331 133
Q ss_pred hHHHHHHHHHHHhccCch-h-------hHH----HHhcCcHHHHHHHHcCC----------chHHHHHHHHHHhhCC-HH
Q 012813 310 SAMKDVASAIFNLCITHE-N-------KAR----AVRDGGVSVILKKIMDG----------VHVDELLAILAMLSTN-HR 366 (456)
Q Consensus 310 ~~~~~a~~aL~~L~~~~~-~-------~~~----~v~~g~v~~Lv~lL~~~----------~~~~~a~~~L~~L~~~-~~ 366 (456)
.....+..+|.|+-.... . ... ......+..|+.+|... ....-.+.+|..++.. ..
T Consensus 204 ~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~ 283 (446)
T PF10165_consen 204 PPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE 283 (446)
T ss_pred hhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH
Confidence 567788888888832211 1 000 12234677888887521 2233466777777775 45
Q ss_pred HHHHHHh--------------hC--cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhh
Q 012813 367 AVEEIGD--------------LG--GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK 410 (456)
Q Consensus 367 ~~~~i~~--------------~g--~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~ 410 (456)
.|+.+.. .| .-..|+++|.+.. +.++..+...|+.||..+.+.
T Consensus 284 ~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~-~~~k~~vaellf~Lc~~d~~~ 342 (446)
T PF10165_consen 284 VRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD-PQLKDAVAELLFVLCKEDASR 342 (446)
T ss_pred HHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC-chHHHHHHHHHHHHHhhhHHH
Confidence 5655533 12 3567889998765 899999999999999987654
No 113
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.05 E-value=0.0014 Score=42.64 Aligned_cols=40 Identities=10% Similarity=0.268 Sum_probs=35.0
Q ss_pred HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhc
Q 012813 365 HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 405 (456)
Q Consensus 365 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 405 (456)
++.+..+.+.|+++.|++++.++ ++.+++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 35778889999999999999955 59999999999999973
No 114
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.04 Score=56.07 Aligned_cols=231 Identities=13% Similarity=0.132 Sum_probs=145.3
Q ss_pred CchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC
Q 012813 206 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 285 (456)
Q Consensus 206 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~ 285 (456)
...+-|..+|. +++.+++.-+-.+|.++-..=.+....+..+..++.++.-+.++.++.+.-|..-|.......
T Consensus 208 ~~ldGLf~~Ls------D~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~ 281 (675)
T KOG0212|consen 208 SLLDGLFNMLS------DSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP 281 (675)
T ss_pred HHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC
Confidence 45566677776 456777755555444432111122223345567888898899999999999988888887766
Q ss_pred ccchhhcccCccHHHHhccccCChh-HHHHHH---HHHHHhccCchhhHHHHhc-CcHHHHHHHHcCC--chHHHHHHHH
Q 012813 286 SNKEVIGKSGALKPLIDLLDEGHQS-AMKDVA---SAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAIL 358 (456)
Q Consensus 286 ~~~~~i~~~G~i~~Lv~lL~~~~~~-~~~~a~---~aL~~L~~~~~~~~~~v~~-g~v~~Lv~lL~~~--~~~~~a~~~L 358 (456)
.+.....-+|++..++.++.+.... .++.+. ..|..++........ ++. ..+..|.+.+.+. +.+-.++.-+
T Consensus 282 g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi 360 (675)
T KOG0212|consen 282 GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWI 360 (675)
T ss_pred CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 6555555678888888888775442 333332 235556655554444 443 4577888888765 3444455444
Q ss_pred HHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHH
Q 012813 359 AMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRK 438 (456)
Q Consensus 359 ~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~ 438 (456)
..|-....+.-........+.|++-+... ++.+-..++.+|.++|...... .. -.++..|..+....+.-.+..
T Consensus 361 ~~l~~~~p~ql~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~~~~--~~---~~fl~sLL~~f~e~~~~l~~R 434 (675)
T KOG0212|consen 361 ILLYHKAPGQLLVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSSNSP--NL---RKFLLSLLEMFKEDTKLLEVR 434 (675)
T ss_pred HHHHhhCcchhhhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCcccc--cH---HHHHHHHHHHHhhhhHHHHhh
Confidence 44433333333333445778888888754 5889999999999999976542 11 133344555555556567888
Q ss_pred HHHHHHHHhcc
Q 012813 439 ATGILERLKRT 449 (456)
Q Consensus 439 A~~~L~~l~~~ 449 (456)
+.-|+|.+|-.
T Consensus 435 g~lIIRqlC~l 445 (675)
T KOG0212|consen 435 GNLIIRQLCLL 445 (675)
T ss_pred hhHHHHHHHHH
Confidence 88888888743
No 115
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.03 E-value=0.08 Score=53.51 Aligned_cols=117 Identities=16% Similarity=0.001 Sum_probs=83.9
Q ss_pred chhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCc
Q 012813 207 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS 286 (456)
Q Consensus 207 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~ 286 (456)
++..|+..|. +.++.++..++.+|..+- ...+.+.|+.+|++.++.++..++.++..
T Consensus 87 ~~~~L~~~L~------d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~------ 143 (410)
T TIGR02270 87 DLRSVLAVLQ------AGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGA------ 143 (410)
T ss_pred HHHHHHHHhc------CCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHh------
Confidence 3777888887 456778888888886532 23467778888888888888877766654
Q ss_pred cchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHh
Q 012813 287 NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAML 361 (456)
Q Consensus 287 ~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L 361 (456)
......+.|..+|++.++.++..|+.+|..|-. ..+++.|...+.+. .++..|+..|..+
T Consensus 144 -----r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 144 -----HRHDPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred -----hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 112245788888888889999999999987743 23566677777754 6677787777555
No 116
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.07 Score=50.91 Aligned_cols=236 Identities=11% Similarity=0.107 Sum_probs=153.8
Q ss_pred hccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHH-HHHHHhcCCHHHHHHHHHHHHH
Q 012813 202 GESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPL-LMDALRSGTIETRSNAAAALFT 280 (456)
Q Consensus 202 ~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~-Lv~lL~~~~~~~~~~aa~aL~~ 280 (456)
+. +|..+.++..+- .+|.++...|...|..++..+..-..+.++.-.-+. +..+-..-+.-+|......+..
T Consensus 125 vN-aeilklildcIg------geddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIie 197 (524)
T KOG4413|consen 125 VN-AEILKLILDCIG------GEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIE 197 (524)
T ss_pred hh-hhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHH
Confidence 45 788899998887 567889999999999999888776666665421121 2222223344556666666666
Q ss_pred hcc-CCccchhhcccCccHHHHhcccc-CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--c--hHHHH
Q 012813 281 LSA-LDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--V--HVDEL 354 (456)
Q Consensus 281 Ls~-~~~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~--~~~~a 354 (456)
+.. .++.....-..|.+..|..=|+. .+.-++.+++...+.|...+.++..+.+.|.|..+-..+... + .+-.+
T Consensus 198 ifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfra 277 (524)
T KOG4413|consen 198 IFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRA 277 (524)
T ss_pred HHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHH
Confidence 654 44556666678988888877776 566778889999999999888898888999999999888732 2 23335
Q ss_pred HHHHHHhhCCHH----HHHHHHhh--CcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHH----H
Q 012813 355 LAILAMLSTNHR----AVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT----I 424 (456)
Q Consensus 355 ~~~L~~L~~~~~----~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~----L 424 (456)
+.....+-+... .-+++++. -+|....+++... ++..++.|+.+|..+....... +++...| -+. +
T Consensus 278 lmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGa--dlllkTg-ppaaehll 353 (524)
T KOG4413|consen 278 LMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGA--DLLLKTG-PPAAEHLL 353 (524)
T ss_pred HHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchh--HHHhccC-ChHHHHHH
Confidence 555444443321 12233333 2355566777654 5899999999999998877653 5544323 222 2
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 425 SKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 425 ~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
....+.....-++.+...|.++++
T Consensus 354 arafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 354 ARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHhcccccchHHHHHHHHHHhhc
Confidence 333333333456666777777664
No 117
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.93 E-value=0.023 Score=49.05 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=94.3
Q ss_pred hhhcccCccHHHHhccccCC------hhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC----chHHHHHHHH
Q 012813 289 EVIGKSGALKPLIDLLDEGH------QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDELLAIL 358 (456)
Q Consensus 289 ~~i~~~G~i~~Lv~lL~~~~------~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~----~~~~~a~~~L 358 (456)
..+.+.||+..|++++.++. .+....++.++..|-.++-.....++...|..++..+... .+...|+++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45667889999999998875 3677888999988877765455566666778888877633 6788999999
Q ss_pred HHhhCCHHH-HHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChh
Q 012813 359 AMLSTNHRA-VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 409 (456)
Q Consensus 359 ~~L~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~ 409 (456)
.+++.++.. ...+.+.=-++.|+..|+.+ ++..+.+|+.++-.|....++
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCh
Confidence 999997655 55555555689999999975 599999999999988776654
No 118
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.019 Score=62.08 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhcc-CCccchhhcc----cCccHHHHhcccc-CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHH
Q 012813 270 TRSNAAAALFTLSA-LDSNKEVIGK----SGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILK 343 (456)
Q Consensus 270 ~~~~aa~aL~~Ls~-~~~~~~~i~~----~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~ 343 (456)
-..-+..+|.|+.. +++....++. .|.++.+..+|.. +++++...|+..+.-+..+.+.-..++..|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 34556788999876 5566666654 4788888888876 5778999999999999999998889999999999999
Q ss_pred HHcC-CchHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhcc
Q 012813 344 KIMD-GVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 406 (456)
Q Consensus 344 lL~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 406 (456)
+|.+ +..++.++.+|..|+++++...+..++|++.-+..++-.+.++..+.+|+.+|.-+...
T Consensus 1821 lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1821 LLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 9986 48999999999999999998888889999999998888777788899999999988653
No 119
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00082 Score=67.21 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=54.4
Q ss_pred CCCccccccchhhccCcccCCCCccccHHHHHHHHhcC----CCCCCCCcccccCCCCcccHH----HHHHHHHHHHHcC
Q 012813 72 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG----NRTCPRTQQVLSHTILTPNHL----IREMISQWCRSQG 143 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~----~~~~P~~~~~l~~~~l~~n~~----lk~~i~~w~~~~~ 143 (456)
.+.+..||||.+.-.=|++..|||.||=.||-++|..+ ...||.|+..+...+|.|-+- -++.++..+..+|
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 34488999999999999999999999999999988642 356999999988866655432 2333555555555
No 120
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.81 E-value=0.065 Score=52.81 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=108.6
Q ss_pred CchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC
Q 012813 206 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 285 (456)
Q Consensus 206 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~ 285 (456)
..++.++.++. +.+..++..|...+..+. ...++|.+..++.+.++.+|..++.+|..+
T Consensus 43 ~~~~~~~~~l~------~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~---- 101 (335)
T COG1413 43 EAADELLKLLE------DEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGEL---- 101 (335)
T ss_pred hhHHHHHHHHc------CCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----
Confidence 35666777776 445677777777654332 123678888888888888888887755443
Q ss_pred ccchhhcccCccHHHHhccc-cCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCC
Q 012813 286 SNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN 364 (456)
Q Consensus 286 ~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~ 364 (456)
+...+++.|+++|. +.+..++..|+.+|..+-... ++..++..+.+..... +...+. ...
T Consensus 102 ------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~-a~~~~~--~~~ 162 (335)
T COG1413 102 ------GDPEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGS-AAAALD--AAL 162 (335)
T ss_pred ------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhh-hhhhcc--chH
Confidence 33456788888888 477888888888888763322 3677777776643211 221110 000
Q ss_pred HHHHHH-------HHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHH
Q 012813 365 HRAVEE-------IGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKR 437 (456)
Q Consensus 365 ~~~~~~-------i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~ 437 (456)
-..|.. +.+.-.++.+...+.... ..++..|..+|..+.... ......+...+++.+..++.
T Consensus 163 ~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~ 231 (335)
T COG1413 163 LDVRAAAAEALGELGDPEAIPLLIELLEDED-ADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRK 231 (335)
T ss_pred HHHHHHHHHHHHHcCChhhhHHHHHHHhCch-HHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHH
Confidence 011211 112225666677776543 667777777777766654 12334444455555555555
Q ss_pred HHHHHHH
Q 012813 438 KATGILE 444 (456)
Q Consensus 438 ~A~~~L~ 444 (456)
++...|.
T Consensus 232 ~~~~~l~ 238 (335)
T COG1413 232 AALLALG 238 (335)
T ss_pred HHHHHhc
Confidence 5554443
No 121
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.81 E-value=0.0012 Score=46.47 Aligned_cols=55 Identities=29% Similarity=0.106 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHh
Q 012813 268 IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 322 (456)
Q Consensus 268 ~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L 322 (456)
+.+|..|+++|.+++........-....+++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999876554444334567899999999999999999999999875
No 122
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.77 E-value=0.022 Score=51.15 Aligned_cols=108 Identities=12% Similarity=0.110 Sum_probs=83.1
Q ss_pred cCChhHHHHHHHHHHHhccCchhhHHHHhc--C--------------cHHHHHHHHcCC--------chHHHHHHHHHHh
Q 012813 306 EGHQSAMKDVASAIFNLCITHENKARAVRD--G--------------GVSVILKKIMDG--------VHVDELLAILAML 361 (456)
Q Consensus 306 ~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~--g--------------~v~~Lv~lL~~~--------~~~~~a~~~L~~L 361 (456)
+.+......++.+|.||+..++++..+.+. . .+..|++.+..+ .-..+...+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 344456778899999999999888766543 2 466777777541 4577899999999
Q ss_pred hCCHHHHHHHHhh--Cc--HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHH
Q 012813 362 STNHRAVEEIGDL--GG--VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMR 415 (456)
Q Consensus 362 ~~~~~~~~~i~~~--g~--i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~ 415 (456)
+..+++|+.+.+. +. +..|+-++.+. +..-|.-++++|.|+|.....+ ..++
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL 141 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLL 141 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhc
Confidence 9999999999865 45 78888888766 5777888999999999987665 3444
No 123
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.23 Score=47.52 Aligned_cols=277 Identities=10% Similarity=0.106 Sum_probs=160.3
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhh--hhccccccccCCCChhhHHHHHHHHHcc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQL--LSPLSESKCENGINPNLQEDVITTLLNL 239 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~L--v~lL~~~~~~~~~~~~~~~~a~~~L~~L 239 (456)
.+.++.++..+.+ +.++-..|+..|..++. .+..-..+.+ ....+.+ ..+-- ..+.-++...+..+..+
T Consensus 127 aeilklildcIggeddeVAkAAiesikrial-fpaaleaiFe-SellDdlhlrnlaa------kcndiaRvRVleLIiei 198 (524)
T KOG4413|consen 127 AEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFE-SELLDDLHLRNLAA------KCNDIARVRVLELIIEI 198 (524)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcc-cccCChHHHhHHHh------hhhhHHHHHHHHHHHHH
Confidence 4556667777754 45667778888888888 4555556665 3333322 11111 11233455566666555
Q ss_pred ccCcchhHHHhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccC--ChhHHHHHH
Q 012813 240 SIHDNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVA 316 (456)
Q Consensus 240 s~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~a~ 316 (456)
.+-......-....|.+..|..=|+. .+.-++.++......|+..+..++.+.+.|.|..+..++... +|--+-.++
T Consensus 199 fSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfral 278 (524)
T KOG4413|consen 199 FSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRAL 278 (524)
T ss_pred HhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHH
Confidence 44333222233333555555544444 355678888899999999888999999999999999999764 333333343
Q ss_pred HHHH----HhccCchhhHHHHhc--CcHHHHHHHHc--CCchHHHHHHHHHHhhCCHHHHHHHHhhCc--HHHHHHHhhh
Q 012813 317 SAIF----NLCITHENKARAVRD--GGVSVILKKIM--DGVHVDELLAILAMLSTNHRAVEEIGDLGG--VSCMLRIIRE 386 (456)
Q Consensus 317 ~aL~----~L~~~~~~~~~~v~~--g~v~~Lv~lL~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~--i~~Lv~ll~~ 386 (456)
-... ++...+-.-..+++. -+|...++++. +++..+.|+.+|..|-++.++.+.+...|- ...++.-..+
T Consensus 279 mgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafd 358 (524)
T KOG4413|consen 279 MGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFD 358 (524)
T ss_pred HHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhc
Confidence 3333 332222111222221 12333334433 458899999999999999999999988873 4444433322
Q ss_pred cCChhHHHHHHHHHHHHhccCh---hh---------HHHHHHhh-------ccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 387 STCDRNKENCIAILHTICLSDR---TK---------WKAMREEE-------STHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 387 ~~~~~~~~~A~~~L~~l~~~~~---~~---------~~~~~~~~-------g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
.+-..-++.++.+|.+++..-. +. .+..+-.+ .-.+.+..+++...+.+.-.|.+.+..+.
T Consensus 359 qnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAia 438 (524)
T KOG4413|consen 359 QNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIA 438 (524)
T ss_pred ccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 2224457888899998876422 11 11111110 12334555667777777777776666554
No 124
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.65 E-value=0.012 Score=46.84 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhh-cCChhHHHHHHHHHHHHhccChhhHHHHHH
Q 012813 350 HVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRE-STCDRNKENCIAILHTICLSDRTKWKAMRE 416 (456)
Q Consensus 350 ~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~ 416 (456)
++...+.+|.+||. ++.++..+.+.||++.++..-.- ..+|-.++.|+.++.+|+..+++. +.++.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN-Q~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN-QEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH-HHHHH
Confidence 45678899999998 47899999999999999976553 456999999999999999999865 45553
No 125
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.63 E-value=0.0077 Score=55.89 Aligned_cols=188 Identities=10% Similarity=0.055 Sum_probs=107.7
Q ss_pred CCChhhHHHHHHHHHccccCc---chhHHHhcC-CCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccH
Q 012813 223 GINPNLQEDVITTLLNLSIHD---NNKKLVAET-PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALK 298 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~---~~~~~i~~~-~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~ 298 (456)
+.+.+.+.+|+.-|..+..+. .....+... ..++..+...+.+....+...|+.++..|+..-...-.-.-...++
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 457889999999998886655 233333221 0244556666666667788888888888876433322112245789
Q ss_pred HHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhh-
Q 012813 299 PLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDL- 374 (456)
Q Consensus 299 ~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~- 374 (456)
.|++.+.+.+..++..|..+|..++........+ .++.+...+.+. .++..++..|..+... +.....+...
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 9999999888889999999999998755411111 134455555554 5677888888887664 3112222111
Q ss_pred ---CcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHH
Q 012813 375 ---GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMR 415 (456)
Q Consensus 375 ---g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~ 415 (456)
..++.+...+... ++.+|+.|..+++.+....++....++
T Consensus 174 ~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp HHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred hHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 2456667777755 599999999999999887766543443
No 126
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.61 E-value=0.11 Score=53.03 Aligned_cols=214 Identities=15% Similarity=0.199 Sum_probs=122.4
Q ss_pred hhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc------------
Q 012813 226 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK------------ 293 (456)
Q Consensus 226 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~------------ 293 (456)
..+.-++++++..++... ...+.+.. ++..|-.+|++.....|=.|.+.|..|+.....+..+.+
T Consensus 278 emV~lE~Ar~v~~~~~~n-v~~~~~~~--~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr 354 (898)
T COG5240 278 EMVFLEAARAVCALSEEN-VGSQFVDQ--TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENR 354 (898)
T ss_pred hhhhHHHHHHHHHHHHhc-cCHHHHHH--HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccc
Confidence 566777777777665433 12333332 567777888888889999999999998865432222111
Q ss_pred ---------------cCccHHHHhcccc----CChhHHHHHHHHHHHhccCchhhHH---------HHhcCc-------H
Q 012813 294 ---------------SGALKPLIDLLDE----GHQSAMKDVASAIFNLCITHENKAR---------AVRDGG-------V 338 (456)
Q Consensus 294 ---------------~G~i~~Lv~lL~~----~~~~~~~~a~~aL~~L~~~~~~~~~---------~v~~g~-------v 338 (456)
..-|..|++++.+ -+...+.-+..++..||..-+.+.. +.+.|+ |
T Consensus 355 ~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~V 434 (898)
T COG5240 355 TISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMV 434 (898)
T ss_pred cchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 1123333333321 1334444556666677654432221 123343 4
Q ss_pred HHHHHHHcC-CchHHHHHHHHHHhhCC---HHHH----HHHHhhC--------cHHHHH-HHhhhcCChhHHHHHHHHHH
Q 012813 339 SVILKKIMD-GVHVDELLAILAMLSTN---HRAV----EEIGDLG--------GVSCML-RIIRESTCDRNKENCIAILH 401 (456)
Q Consensus 339 ~~Lv~lL~~-~~~~~~a~~~L~~L~~~---~~~~----~~i~~~g--------~i~~Lv-~ll~~~~~~~~~~~A~~~L~ 401 (456)
..+.+.+.. ++.+|.|+..|+....+ ++.. ..+.+.| .+..+. .++- . +..++..|+.+|.
T Consensus 435 daisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL-E-N~ivRsaAv~aLs 512 (898)
T COG5240 435 DAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLIL-E-NNIVRSAAVQALS 512 (898)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH-h-hhHHHHHHHHHHH
Confidence 455555553 47788887777666543 2221 1222333 233333 2232 2 3677888888887
Q ss_pred HHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 402 TICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 402 ~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
-.+-+.... .. ...+.-.|.+.+.+.++.++..|+.+|+++..
T Consensus 513 kf~ln~~d~---~~-~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 513 KFALNISDV---VS-PQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HhccCcccc---cc-HHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 766544321 11 12344567777888899999999999999863
No 127
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.60 E-value=0.27 Score=48.43 Aligned_cols=182 Identities=21% Similarity=0.287 Sum_probs=116.2
Q ss_pred hhHHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 164 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 164 ~~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
..+..+++.+.+. ...+..|...+..+.. .-+++.|..++. +.++.++..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~------d~~~~vr~~a~~aLg~~~-- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLS------DEDPRVRDAAADALGELG-- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhc------CCCHHHHHHHHHHHHccC--
Confidence 3566777777654 5566666666443332 457888888888 567889999999776642
Q ss_pred cchhHHHhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhH----------
Q 012813 243 DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSA---------- 311 (456)
Q Consensus 243 ~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~---------- 311 (456)
.+..++.|+.+|+ +.+..+|..++.+|..+-. ..++..|+.++.+.....
T Consensus 103 ---------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~ 163 (335)
T COG1413 103 ---------DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALL 163 (335)
T ss_pred ---------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHH
Confidence 2347888999999 5889999999999987743 223777777777654322
Q ss_pred --HHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhc
Q 012813 312 --MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES 387 (456)
Q Consensus 312 --~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~ 387 (456)
+..+..+|..+ ...-.++.+++.+.+. .++..|..+|..+.... ..+...+...+...
T Consensus 164 ~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~ 225 (335)
T COG1413 164 DVRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE 225 (335)
T ss_pred HHHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC
Confidence 22222222222 1224578888888876 57777888888777664 22334445555433
Q ss_pred CChhHHHHHHHHHHHH
Q 012813 388 TCDRNKENCIAILHTI 403 (456)
Q Consensus 388 ~~~~~~~~A~~~L~~l 403 (456)
+..++..++..|..+
T Consensus 226 -~~~vr~~~~~~l~~~ 240 (335)
T COG1413 226 -SLEVRKAALLALGEI 240 (335)
T ss_pred -CHHHHHHHHHHhccc
Confidence 355555555555444
No 128
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.59 E-value=0.0016 Score=61.75 Aligned_cols=53 Identities=15% Similarity=0.384 Sum_probs=43.5
Q ss_pred CCCccccccchhhccCc---c-cCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCc
Q 012813 72 CPEEFKCPLSKELMRDP---V-ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 126 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dP---v-~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~ 126 (456)
-...|.||||+..|..- | +.||||.|...+|.+-- ....||.|+.|++..+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 46689999999999542 3 56899999999999884 256799999999987766
No 129
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.51 E-value=0.0071 Score=42.39 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 390 DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 390 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
+.+|..|+++|.+++...+...+... ..+++.|..++++.++.++..|++.|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~--~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL--PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH--HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46789999999999988877666654 58999999999999999999999999865
No 130
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.00099 Score=70.08 Aligned_cols=49 Identities=24% Similarity=0.561 Sum_probs=43.3
Q ss_pred CCCCccccccchhhccC-----cccCCCCccccHHHHHHHHhcCCCCCCCCcccc
Q 012813 71 SCPEEFKCPLSKELMRD-----PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVL 120 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m~d-----Pv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l 120 (456)
....+-.|+||.+.|.. |-.+||||.|...|+.+|++. ..+||+||..+
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 34456789999999999 789999999999999999997 78999999844
No 131
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.047 Score=56.65 Aligned_cols=172 Identities=17% Similarity=0.172 Sum_probs=116.5
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHH--HhcCC--CCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL--VAETP--MVIPLLMDALRSGTIETRSNAAAALFT 280 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~--i~~~~--~~i~~Lv~lL~~~~~~~~~~aa~aL~~ 280 (456)
+..+|.|..+|. +++....+-|..+|..++.+....-. ....+ -.+|.++.+.+++++..|..|...+-.
T Consensus 127 pelLp~L~~~L~------s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq 200 (885)
T KOG2023|consen 127 PELLPQLCELLD------SPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQ 200 (885)
T ss_pred hhHHHHHHHHhc------CCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhh
Confidence 356788999998 55778889999999998766542111 11111 268899999999999999999887765
Q ss_pred hccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHH
Q 012813 281 LSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAIL 358 (456)
Q Consensus 281 Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L 358 (456)
............-...++.|..+-.+.+++++++.+.+|..|......|..=-=.++|..++..-++. ++.-.|+...
T Consensus 201 ~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 201 FIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred eeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 54433222122113456777777777899999999999999876543332111125666676666654 6778899999
Q ss_pred HHhhCCHHHHHHHHhh--CcHHHHHH
Q 012813 359 AMLSTNHRAVEEIGDL--GGVSCMLR 382 (456)
Q Consensus 359 ~~L~~~~~~~~~i~~~--g~i~~Lv~ 382 (456)
..+|..+-.+..+... ..||.|+.
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHc
Confidence 9999987555555433 35666654
No 132
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.85 Score=48.15 Aligned_cols=238 Identities=15% Similarity=0.177 Sum_probs=134.6
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
+..++.|++.|.. ++.++-.|+..++.|++.++.+.-.+ -|.+..+|.. +.+.=+....+....+|+.
T Consensus 180 r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L------AP~ffklltt-----SsNNWmLIKiiKLF~aLtp 248 (877)
T KOG1059|consen 180 RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL------APLFYKLLVT-----SSNNWVLIKLLKLFAALTP 248 (877)
T ss_pred hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc------cHHHHHHHhc-----cCCCeehHHHHHHHhhccc
Confidence 4456777777753 47778888888888888777764333 3445555553 2233355566666666665
Q ss_pred CcchhHHHhcCCCCHHHHHHHHhcCC-HHHHHHHHHHHH--HhccCCccchhhcccCccHHHHhccccCChhHHHHHHHH
Q 012813 242 HDNNKKLVAETPMVIPLLMDALRSGT-IETRSNAAAALF--TLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 318 (456)
Q Consensus 242 ~~~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~aa~aL~--~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~a 318 (456)
-++ .++. ..+|.|..++.+.. ..+.-.+..++. +++....+...-+. =++..|-.++.+.|+.++-.++-|
T Consensus 249 lEP---RLgK--KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq-LCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 249 LEP---RLGK--KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred cCc---hhhh--hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHH
Confidence 443 2332 25777888887664 333344443332 23332212111111 145666677778888889889999
Q ss_pred HHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHH
Q 012813 319 IFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 396 (456)
Q Consensus 319 L~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 396 (456)
++.+...+.- .|.+ --..+++.|.+. .++-.|+.+|..+......+ +| +..|+..+...++...+..-
T Consensus 323 m~KI~ktHp~---~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~-eI-----Vk~LM~~~~~ae~t~yrdel 392 (877)
T KOG1059|consen 323 MSKILKTHPK---AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKKNLM-EI-----VKTLMKHVEKAEGTNYRDEL 392 (877)
T ss_pred HHHHhhhCHH---HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHH-HH-----HHHHHHHHHhccchhHHHHH
Confidence 9988765431 2211 224567778764 78888999998887644333 22 34455433333334556665
Q ss_pred HHHHHHHhccChhhHHHHHHhhccHHHHHHHhh
Q 012813 397 IAILHTICLSDRTKWKAMREEESTHGTISKLAQ 429 (456)
Q Consensus 397 ~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~ 429 (456)
+.-+..+|..+. +..+..-+=.+.+|++|.+
T Consensus 393 l~~II~iCS~sn--Y~~ItdFEWYlsVlveLa~ 423 (877)
T KOG1059|consen 393 LTRIISICSQSN--YQYITDFEWYLSVLVELAR 423 (877)
T ss_pred HHHHHHHhhhhh--hhhhhhHHHHHHHHHHHHh
Confidence 665666666553 2333333334556666643
No 133
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0071 Score=57.91 Aligned_cols=48 Identities=21% Similarity=0.514 Sum_probs=41.1
Q ss_pred CCCccccccchhhccCc-------------ccCCCCccccHHHHHHHHhcCCCCCCCCcccc
Q 012813 72 CPEEFKCPLSKELMRDP-------------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVL 120 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dP-------------v~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l 120 (456)
.-++-+|-||++-|-.| --+||||.+--.|+..|++. ..+||.||.|+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 45678999999775433 58999999999999999997 78999999995
No 134
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.042 Score=57.76 Aligned_cols=206 Identities=13% Similarity=0.111 Sum_probs=129.9
Q ss_pred Cchhhhhhccccccc-cCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Q 012813 206 DAIPQLLSPLSESKC-ENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 284 (456)
Q Consensus 206 g~i~~Lv~lL~~~~~-~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~ 284 (456)
+.+|.|+.+|.+..- .+.++......|-..|.-++..- +..|+. .++|.+-.-+++++..-|..++-++.++-..
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~D~Iv~--~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--GDDIVP--HVLPFIEENIQNPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--cccchh--hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence 577888888876321 11222233333333333322111 122333 3677666677888999999999999888765
Q ss_pred Cc-cchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCch-hhHHH-HhcCcHHHHHHHHcCC-chHHHHHHHHHH
Q 012813 285 DS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARA-VRDGGVSVILKKIMDG-VHVDELLAILAM 360 (456)
Q Consensus 285 ~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~~-v~~g~v~~Lv~lL~~~-~~~~~a~~~L~~ 360 (456)
++ .+..=...+++|.++.++.+.+.-++..++|+|+.++..-. .+.-- .-.+.++.++.-|.+. .+...+++++.+
T Consensus 395 p~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~ 474 (859)
T KOG1241|consen 395 PEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFIS 474 (859)
T ss_pred CchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHH
Confidence 53 33333446899999999998888889999999999987543 22212 2236778888888764 889999999999
Q ss_pred hhCC--HHHHHH----HHhh---CcHHHHHHHhhh--cCChhHHHHHHHHHHHHhccChhhHHHHH
Q 012813 361 LSTN--HRAVEE----IGDL---GGVSCMLRIIRE--STCDRNKENCIAILHTICLSDRTKWKAMR 415 (456)
Q Consensus 361 L~~~--~~~~~~----i~~~---g~i~~Lv~ll~~--~~~~~~~~~A~~~L~~l~~~~~~~~~~~~ 415 (456)
|+.. ...+.. .... -.|..|++.-.. ++....|..|..+|..|..+++..+-.++
T Consensus 475 Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v 540 (859)
T KOG1241|consen 475 LAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMV 540 (859)
T ss_pred HHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9853 111111 1110 123344444333 23356888999999999998886555554
No 135
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.0034 Score=56.71 Aligned_cols=53 Identities=13% Similarity=0.427 Sum_probs=47.1
Q ss_pred CccccccchhhccCcc----cCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcc
Q 012813 74 EEFKCPLSKELMRDPV----ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTP 127 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv----~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~ 127 (456)
.-|.||+|.+.+++.+ +-||||.++..|.++.... +..||+|..|++..++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 5689999999999864 5689999999999999886 789999999999988876
No 136
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.19 Score=55.65 Aligned_cols=218 Identities=16% Similarity=0.171 Sum_probs=128.1
Q ss_pred CCChhhHHHHHHHHHccccCcchhHHHhcC-CCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC--ccchhhcccCccHH
Q 012813 223 GINPNLQEDVITTLLNLSIHDNNKKLVAET-PMVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKP 299 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~--~~~~~i~~~G~i~~ 299 (456)
+.+..+|..+..+|..++..+......... ..+...|.+-+++.....+.....+|..|-... +....+. -.|+.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHH
Confidence 446889999999999998774322211110 013344555555555666666666666654422 2333332 23444
Q ss_pred HHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcC------cHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHH
Q 012813 300 LIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDG------GVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEE 370 (456)
Q Consensus 300 Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g------~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~ 370 (456)
++=.++..+...++.|..+|..++. .....+.| .|...+..+..+ +.....+.-|..+..--.....
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4445577788999999999998874 11111222 455555555433 2222222213333221111122
Q ss_pred HHhhCc----HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 371 IGDLGG----VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 371 i~~~g~----i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
+.+.+. +..+...|. ++++.....|++.+..++...+..+-.-.. ...++.+..+++..+-.++.+...+|..|
T Consensus 819 ~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred cccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 223333 344444454 445999999999999999988765333332 25888888999999989999999999877
Q ss_pred hc
Q 012813 447 KR 448 (456)
Q Consensus 447 ~~ 448 (456)
.+
T Consensus 897 ir 898 (1176)
T KOG1248|consen 897 IR 898 (1176)
T ss_pred HH
Confidence 54
No 137
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0022 Score=59.81 Aligned_cols=47 Identities=21% Similarity=0.226 Sum_probs=42.3
Q ss_pred ccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCC
Q 012813 77 KCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 123 (456)
Q Consensus 77 ~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 123 (456)
.||||..-|--||.++|+|.||.-||+--..++..+||+||.|++..
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 49999999999999999999999999987766667899999999754
No 138
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.15 E-value=0.46 Score=43.74 Aligned_cols=176 Identities=15% Similarity=0.195 Sum_probs=119.7
Q ss_pred hhhHHHHHHHHHccccCcchhHHHhcCCCCHHH-HHHHH----hcCC-HHHHHHHHHHHHHhccCCccc--hhhcccCcc
Q 012813 226 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPL-LMDAL----RSGT-IETRSNAAAALFTLSALDSNK--EVIGKSGAL 297 (456)
Q Consensus 226 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~-Lv~lL----~~~~-~~~~~~aa~aL~~Ls~~~~~~--~~i~~~G~i 297 (456)
..-..+|+..|.-++.+++.+..+..+. +|. |-.+| ++.+ .-.|..+.++|..|..+++.- ..+...++|
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~--iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAH--IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHcc--ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 4567889999999999999999999864 442 22333 3333 457889999999999876532 234468999
Q ss_pred HHHHhccccCChhHHHHHHHHHHHhccCchhh----HHHHhcCcHHHHHHH----H-cCC--chHHHHHHHHHHhhCCHH
Q 012813 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENK----ARAVRDGGVSVILKK----I-MDG--VHVDELLAILAMLSTNHR 366 (456)
Q Consensus 298 ~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~----~~~v~~g~v~~Lv~l----L-~~~--~~~~~a~~~L~~L~~~~~ 366 (456)
|..++.+..++...+.-|...+..+-.++.+- ...-+--+|..+++- + +.+ .+..+++.+..+|+.++.
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 99999999999988888988888887776543 322233334333332 2 223 678899999999999999
Q ss_pred HHHHHHhh--CcH--HHHHHHhhhcCChhHHHHHHHHHHHHhc
Q 012813 367 AVEEIGDL--GGV--SCMLRIIRESTCDRNKENCIAILHTICL 405 (456)
Q Consensus 367 ~~~~i~~~--g~i--~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 405 (456)
.|.++..+ ..+ ...-.++++ ++..+..-...+.|++.
T Consensus 251 ar~aL~~clPd~Lrd~tfs~~l~~--D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 251 ARAALRSCLPDQLRDGTFSLLLKD--DPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHHHhhCcchhccchHHHHHhc--ChhHHHHHHHHHHHhcc
Confidence 99888655 111 123344553 25555555555666554
No 139
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.96 E-value=0.12 Score=44.59 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=86.7
Q ss_pred HHHHhcCcHHHHHHHHcCCc--------hHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcC-ChhHHHHHHHHH
Q 012813 330 ARAVRDGGVSVILKKIMDGV--------HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIREST-CDRNKENCIAIL 400 (456)
Q Consensus 330 ~~~v~~g~v~~Lv~lL~~~~--------~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~A~~~L 400 (456)
..+++.||+..|++++.++. ....++.++..|-.+.-.-=...+...|..++..+.... +..+...|...|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45778899999999998753 234466666666665431113344456788887777532 477899999999
Q ss_pred HHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 401 HTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 401 ~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
.++...++..+..+ .++--++.|+..++..++.++.+|..++-.|=
T Consensus 85 Es~Vl~S~~ly~~V-~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 85 ESIVLNSPKLYQLV-EQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHhCCHHHHHHH-hccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999888754444 45588999999999999999999999987653
No 140
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.88 E-value=0.037 Score=49.73 Aligned_cols=101 Identities=13% Similarity=0.067 Sum_probs=73.2
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCC-CC--HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP-MV--IPLLMDALRSGTIETRSNAAAALFTL 281 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~-~~--i~~Lv~lL~~~~~~~~~~aa~aL~~L 281 (456)
...+..|+..+..+.....+...-....+.++.|+|..++.|..+.... +. +..|+.++++.+..-|..++++|.|+
T Consensus 51 ~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 51 GFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence 3467888888876433223345667888999999999999999998754 33 56677777778888888999999999
Q ss_pred ccCCccchhhccc---CccHHHHhccc
Q 012813 282 SALDSNKEVIGKS---GALKPLIDLLD 305 (456)
Q Consensus 282 s~~~~~~~~i~~~---G~i~~Lv~lL~ 305 (456)
|...+....+... ++++.|+--|.
T Consensus 131 cFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 131 CFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9988776666553 45555444443
No 141
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.87 E-value=0.0087 Score=45.52 Aligned_cols=47 Identities=26% Similarity=0.486 Sum_probs=36.1
Q ss_pred ccccccchhhccC-cccC-CCCccccHHHHHHHHhc--CCCCCCCCccccc
Q 012813 75 EFKCPLSKELMRD-PVIL-ASGQTFDRPYIQRWLKA--GNRTCPRTQQVLS 121 (456)
Q Consensus 75 ~f~Cpi~~~~m~d-Pv~l-~~g~~~~r~~I~~~~~~--~~~~~P~~~~~l~ 121 (456)
+-+||.+...=.| |++. .|||.|-..||.+|+.. ...+||.||++..
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4457766666555 6655 49999999999999984 3478999999864
No 142
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.86 E-value=0.18 Score=51.31 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=112.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCCh----hHHHHHHHHHHHhccCchhhHH
Q 012813 256 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQ----SAMKDVASAIFNLCITHENKAR 331 (456)
Q Consensus 256 i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~----~~~~~a~~aL~~L~~~~~~~~~ 331 (456)
...+.+++.+|+...+..+...|.+++.+......+....++..|..++.+++. ......++++..|-...-.-..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 345778889999888888888999999988888888888889999999988744 4555566666655443332222
Q ss_pred HHhcCcHHHHHHHHcC----CchHHHHHHHHHHhhCCHH-HHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhcc
Q 012813 332 AVRDGGVSVILKKIMD----GVHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 406 (456)
Q Consensus 332 ~v~~g~v~~Lv~lL~~----~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 406 (456)
.+....|.....+..- ..+-..|+..|.++..+.. -+..+.+.--+..|+..++.++ ...+.+|...|-.+...
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n-~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN-QRIQTCAIALLNALFRK 243 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc-hHHHHHHHHHHHHHHhh
Confidence 3333444455555432 2678889999999998755 6677777777999999999765 88888899999888776
Q ss_pred Chh
Q 012813 407 DRT 409 (456)
Q Consensus 407 ~~~ 409 (456)
.++
T Consensus 244 a~~ 246 (713)
T KOG2999|consen 244 APD 246 (713)
T ss_pred CCh
Confidence 553
No 143
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.005 Score=59.67 Aligned_cols=46 Identities=22% Similarity=0.443 Sum_probs=39.7
Q ss_pred cccccchhhccCc--c-cCCCCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 76 FKCPLSKELMRDP--V-ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 76 f~Cpi~~~~m~dP--v-~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
++|-||.|-+.+= + +|||+|.|=..||..|+......||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 7999999998754 2 78999999999999999986567999998653
No 144
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.6 Score=48.36 Aligned_cols=264 Identities=12% Similarity=0.043 Sum_probs=150.9
Q ss_pred hHHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 165 HFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 165 ~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
.++.++..++.. ...|+....+|.-+....... .. .-..+.+..+++ ..+...+..+...+..+..+.
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~----~~-~~~l~~l~~ll~------~~~~~~~~~aa~~~ag~v~g~ 165 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL----SG-EYVLELLLELLT------STKIAERAGAAYGLAGLVNGL 165 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc----CH-HHHHHHHHHHhc------cccHHHHhhhhHHHHHHHcCc
Confidence 455666666543 456666666666554421111 11 234555666666 334566666777666665443
Q ss_pred chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHH-HHHHhccCCccchhhcccCccHHHHhcccc---CChhHHHHHHHHH
Q 012813 244 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAA-ALFTLSALDSNKEVIGKSGALKPLIDLLDE---GHQSAMKDVASAI 319 (456)
Q Consensus 244 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~-aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~---~~~~~~~~a~~aL 319 (456)
. ...+.+ .+++..|...+.+.....++.++. +.-.++. +-..-.+.+.++.+-.+|.+ ....++..|..+.
T Consensus 166 ~-i~~~~~-~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~---~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~ 240 (569)
T KOG1242|consen 166 G-IESLKE-FGFLDNLSKAIIDKKSALNREAALLAFEAAQG---NLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAA 240 (569)
T ss_pred H-Hhhhhh-hhHHHHHHHHhcccchhhcHHHHHHHHHHHHH---hcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHH
Confidence 2 112222 245666666666654444443221 1111111 11233456666666666654 3556666666655
Q ss_pred HHhccC---chhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHH
Q 012813 320 FNLCIT---HENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKE 394 (456)
Q Consensus 320 ~~L~~~---~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 394 (456)
..+-.+ ...+ -.+|.++.-+.+. ..+..++..|..|+.+..-.-...-...||.|.+.|-... +.+++
T Consensus 241 kai~~~~~~~aVK------~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~-~evr~ 313 (569)
T KOG1242|consen 241 KAIMRCLSAYAVK------LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTK-PEVRK 313 (569)
T ss_pred HHHHHhcCcchhh------HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCC-HHHHH
Confidence 544221 1111 1345555555544 5677799999999988766667777788999999998765 99999
Q ss_pred HHHHHHHHHhccChh-------------------hHHHHHH-----------hhccHHHHHHHhhcC----CHHHHHHHH
Q 012813 395 NCIAILHTICLSDRT-------------------KWKAMRE-----------EESTHGTISKLAQDG----TARAKRKAT 440 (456)
Q Consensus 395 ~A~~~L~~l~~~~~~-------------------~~~~~~~-----------~~g~~~~L~~Ll~~~----~~~~k~~A~ 440 (456)
.+..+|..++..-.+ ...+.+. ++-.+..++.+++.| +..++++++
T Consensus 314 a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~ 393 (569)
T KOG1242|consen 314 AGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTA 393 (569)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHH
Confidence 999999998753221 1111111 112233455555554 456899999
Q ss_pred HHHHHHhcchh
Q 012813 441 GILERLKRTVN 451 (456)
Q Consensus 441 ~~L~~l~~~~~ 451 (456)
.+.-|+++-.+
T Consensus 394 ~IidNm~~Lve 404 (569)
T KOG1242|consen 394 IIIDNMCKLVE 404 (569)
T ss_pred HHHHHHHHhhc
Confidence 99999998763
No 145
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=95.84 E-value=0.009 Score=54.75 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=45.9
Q ss_pred ccccccchhhccCcccCC-CCccccHHHHHHHHhc-CCCCCCCCccc--c--cCCCCcccHHHHHHHHH
Q 012813 75 EFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKA-GNRTCPRTQQV--L--SHTILTPNHLIREMISQ 137 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~-~~~~~P~~~~~--l--~~~~l~~n~~lk~~i~~ 137 (456)
.++|||+.....+||+-. |||.|||..|+..+.. ..-.||+-+-+ . ....+.+...+++.|++
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 479999999999999876 9999999999999874 23459985433 2 23345555556666654
No 146
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0049 Score=57.43 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=41.6
Q ss_pred cccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 76 FKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 76 f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
|-|-||.+.+.+||+..|||+||..|-.+.+.. +..|++|.++...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc
Confidence 789999999999999999999999999998887 6789999887643
No 147
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.65 E-value=0.073 Score=39.64 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhhC
Q 012813 312 MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLG 375 (456)
Q Consensus 312 ~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g 375 (456)
++.|++++.++++.+.+-..+.+.++++.++++.... .++--|..+|.-+++..++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5789999999999988888788889999999999854 678889999999999999998887765
No 148
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.0084 Score=58.34 Aligned_cols=45 Identities=31% Similarity=0.602 Sum_probs=39.2
Q ss_pred cccccchhhccC---cccCCCCccccHHHHHHHHhcCC--CCCCCCcccc
Q 012813 76 FKCPLSKELMRD---PVILASGQTFDRPYIQRWLKAGN--RTCPRTQQVL 120 (456)
Q Consensus 76 f~Cpi~~~~m~d---Pv~l~~g~~~~r~~I~~~~~~~~--~~~P~~~~~l 120 (456)
|.|||..+--.| |+.++|||..+|.+|.+-..+|. ..||.|....
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 799999998877 89999999999999999998876 6799986543
No 149
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.0075 Score=54.55 Aligned_cols=37 Identities=35% Similarity=0.466 Sum_probs=32.6
Q ss_pred CCCccccccchhhccCcccCCCCccccHHHHHHHHhc
Q 012813 72 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA 108 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~ 108 (456)
|-+.-+|.+|.+..+|||+.|.|+.|||.+|-+++..
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 4445589999999999999999999999999998764
No 150
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.43 Score=50.53 Aligned_cols=260 Identities=14% Similarity=0.115 Sum_probs=155.7
Q ss_pred hhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc-hhHHHhcCCCCH
Q 012813 178 PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVI 256 (456)
Q Consensus 178 ~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~~i 256 (456)
..++.++.+|..+|.+ -........+..++..++.-.++. ..+..++-.|+.+|.|--.... |-..-.+.+.++
T Consensus 145 ~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~----e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iM 219 (859)
T KOG1241|consen 145 MVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKE----ETSAAVRLAALNALYNSLEFTKANFNNEMERNYIM 219 (859)
T ss_pred HHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhcccc----CCchhHHHHHHHHHHHHHHHHHHhhccHhhhceee
Confidence 3567788888888874 333344444356667777666543 3467888899999887422111 111111222234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccC-CccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchh-------
Q 012813 257 PLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHEN------- 328 (456)
Q Consensus 257 ~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~------- 328 (456)
....+.-.+++.+++.+|...|..+... .+.-..-.....+..-+.-++++++++.-.+...=.++|...-.
T Consensus 220 qvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e 299 (859)
T KOG1241|consen 220 QVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGE 299 (859)
T ss_pred eeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777899999999998887653 23322222233455556667788888888887777767653311
Q ss_pred -----h----HHHHh---cCcHHHHHHHHcC--C-------chHHH---HHHHHHHhhCCHHHHHHHHhhCcHHHHHHHh
Q 012813 329 -----K----ARAVR---DGGVSVILKKIMD--G-------VHVDE---LLAILAMLSTNHRAVEEIGDLGGVSCMLRII 384 (456)
Q Consensus 329 -----~----~~~v~---~g~v~~Lv~lL~~--~-------~~~~~---a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll 384 (456)
. ..+.+ .+++|.|+++|.. + ..... |+..+..+|.+. |+. .+++.+-.-+
T Consensus 300 ~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-----Iv~-~Vl~Fiee~i 373 (859)
T KOG1241|consen 300 AVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-----IVP-HVLPFIEENI 373 (859)
T ss_pred HhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-----chh-hhHHHHHHhc
Confidence 0 11111 2678889999852 1 22222 344444443322 111 1233333344
Q ss_pred hhcCChhHHHHHHHHHHHHhccChh-hHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 012813 385 RESTCDRNKENCIAILHTICLSDRT-KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 451 (456)
Q Consensus 385 ~~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~ 451 (456)
++. +=+-++.|+.++..+-.+... +...++ .++++.++.++.+.+--+|+.++|.|-.++++-+
T Consensus 374 ~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 374 QNP-DWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred CCc-chhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 443 356788888888887766543 333343 4889999999987777789999999999988743
No 151
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.49 E-value=0.0046 Score=60.23 Aligned_cols=35 Identities=29% Similarity=0.613 Sum_probs=31.6
Q ss_pred CccccccchhhccCcccCCCCccccHHHHHHHHhc
Q 012813 74 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA 108 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~ 108 (456)
+++.||||+..++||+++||||+.||.|-...+.+
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 58999999999999999999999999998766654
No 152
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.44 E-value=0.38 Score=44.93 Aligned_cols=139 Identities=11% Similarity=0.107 Sum_probs=96.7
Q ss_pred ChhHHHHHHHHHHHhccCchhhHHH-H-hcCcHHHHHHHHcC-------C-------chHHHHHHHHHHhhCCHHHHHHH
Q 012813 308 HQSAMKDVASAIFNLCITHENKARA-V-RDGGVSVILKKIMD-------G-------VHVDELLAILAMLSTNHRAVEEI 371 (456)
Q Consensus 308 ~~~~~~~a~~aL~~L~~~~~~~~~~-v-~~g~v~~Lv~lL~~-------~-------~~~~~a~~~L~~L~~~~~~~~~i 371 (456)
+++.++.|+.-|..--..-++-.-+ - ..|.+..|++-+.+ + .-.-.|+++|..++++|+.|..|
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5566777776666543333333333 3 34888887765532 1 22455889999999999999999
Q ss_pred HhhCcHHHHHHHhhhcC----ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 372 GDLGGVSCMLRIIREST----CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 372 ~~~g~i~~Lv~ll~~~~----~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
.++...--|.-+|...+ -+..|-.+++++..|.+.+....-..+-+.++++...+.++.|++-.|.-|..+++.+
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99986555555555421 1456788999999999877666666666789999999999999999999999999865
No 153
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.42 E-value=0.67 Score=46.65 Aligned_cols=144 Identities=14% Similarity=0.192 Sum_probs=102.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCc----cchhhcccCccHHHHhccccC-------ChhHHHHHHHHHHHhccCch
Q 012813 259 LMDALRSGTIETRSNAAAALFTLSALDS----NKEVIGKSGALKPLIDLLDEG-------HQSAMKDVASAIFNLCITHE 327 (456)
Q Consensus 259 Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~----~~~~i~~~G~i~~Lv~lL~~~-------~~~~~~~a~~aL~~L~~~~~ 327 (456)
+..+++..+.+-|-+|.-....++.+++ +|..+.++-+++.+=++|.+. +.--+.-++..|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4455555566666666666677777654 566788887889999999753 22335667888999999887
Q ss_pred h--hHHHHhcCcHHHHHHHHcCC---c------hHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHH
Q 012813 328 N--KARAVRDGGVSVILKKIMDG---V------HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 396 (456)
Q Consensus 328 ~--~~~~v~~g~v~~Lv~lL~~~---~------~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 396 (456)
. ...|+ +.||.|.+.+..+ + +.+.+-.+|..+++.+.|...++..|+++.+.++-.-.+......-|
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 3 33444 4789999999732 2 67889999999999999999999999999998765533223444455
Q ss_pred HHHHHHHh
Q 012813 397 IAILHTIC 404 (456)
Q Consensus 397 ~~~L~~l~ 404 (456)
+.++..+.
T Consensus 174 l~Vlll~~ 181 (698)
T KOG2611|consen 174 LKVLLLLV 181 (698)
T ss_pred HHHHHHHH
Confidence 55555443
No 154
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.38 E-value=1.9 Score=41.94 Aligned_cols=184 Identities=17% Similarity=0.173 Sum_probs=110.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc--cCccHHHHhccccCChhHHHHHHHHHHHhccC---chhhHHHH
Q 012813 259 LMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLCIT---HENKARAV 333 (456)
Q Consensus 259 Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~---~~~~~~~v 333 (456)
.+..+.+.+...|+.+...|.++....-....+.+ .-++..+.+.++.++.+-+..|+.++.-|+.. .+....+.
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 45566677789999999998887654433233322 34678888888888766667787888877765 23444444
Q ss_pred hcCcHHHHHHHHcCC----chHHHHHHHHHHhhC---C-HHHHHHHHhhCcHHHH--HHHhhhcC---------ChhHHH
Q 012813 334 RDGGVSVILKKIMDG----VHVDELLAILAMLST---N-HRAVEEIGDLGGVSCM--LRIIREST---------CDRNKE 394 (456)
Q Consensus 334 ~~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~---~-~~~~~~i~~~g~i~~L--v~ll~~~~---------~~~~~~ 394 (456)
+ ...|.|.+.+.++ ..+..++.+|..++. . ++......+. +..+ ...++.+. ++.+..
T Consensus 128 ~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~--le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 128 E-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMES--LESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred H-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHH--HHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 4 4788899998875 233445545555443 2 2222211111 2211 11122111 234555
Q ss_pred HHHHHHHHHhccCh-hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 395 NCIAILHTICLSDR-TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 395 ~A~~~L~~l~~~~~-~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
.|+..-.-|...-+ ....... ...++.|..++++.+..+|-.|...|..|-
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 55555444443333 2334333 367899999999999999999999988774
No 155
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.08 Score=53.71 Aligned_cols=134 Identities=6% Similarity=-0.045 Sum_probs=100.6
Q ss_pred HHHHHHHHHhccCc-hhhHHHHhcCcHHHHHHHHcCCc--hHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcC
Q 012813 313 KDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDGV--HVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIREST 388 (456)
Q Consensus 313 ~~a~~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~~--~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~ 388 (456)
.+++.+|..++.+- --|..+.+..+++.|+++|++++ +.--+...++|+.- .+.-+.-+.+.|.|..|+.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK- 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK- 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence 34445555555543 35777788899999999999984 34456777777765 466777889999999999999865
Q ss_pred ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 389 CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 389 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
++..|.+..|+|.++-.+..+.-+--.-.-.++..++.+..+.+-.++...-.+|||+-
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 47899999999999977654322222223477888888888888899999999999983
No 156
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.0078 Score=56.86 Aligned_cols=52 Identities=27% Similarity=0.432 Sum_probs=44.8
Q ss_pred CCCccccccchhhccCcccCC-CCccccHHHHHHHHhcCCCCCCCCcccccCCC
Q 012813 72 CPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTI 124 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~ 124 (456)
.|+.-.||+|..--.+|..+. +|..||-.||-.+..+ ...||+|+-|.+-++
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~ 349 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDH 349 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHH
Confidence 455678999999999998777 7999999999999996 889999998876544
No 157
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.31 E-value=0.22 Score=39.46 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc
Q 012813 352 DELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD 430 (456)
Q Consensus 352 ~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~ 430 (456)
..++..|..++.. +..-....+ -.++.++..+... +.++|..|+.+|.+++....+..-..+ ..+...|.+++.+
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~D 79 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSAD 79 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcC
Confidence 3455566666542 222222222 2577888888754 599999999999999987665422222 4677788888888
Q ss_pred CCHHHHHHHHHHHHHHh
Q 012813 431 GTARAKRKATGILERLK 447 (456)
Q Consensus 431 ~~~~~k~~A~~~L~~l~ 447 (456)
.++++|..|..+-+.|.
T Consensus 80 ~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 80 PDENVRSAAELLDRLLK 96 (97)
T ss_pred CchhHHHHHHHHHHHhc
Confidence 89999888876666553
No 158
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=0.89 Score=49.96 Aligned_cols=215 Identities=13% Similarity=0.071 Sum_probs=141.8
Q ss_pred HHHHHHHHccccCcch---hHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHH-hccCCccchhhcccCccHHHHhccc
Q 012813 230 EDVITTLLNLSIHDNN---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFT-LSALDSNKEVIGKSGALKPLIDLLD 305 (456)
Q Consensus 230 ~~a~~~L~~Ls~~~~~---~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~-Ls~~~~~~~~i~~~G~i~~Lv~lL~ 305 (456)
.+-+++|.-|+..-+- ...+.-.-|+.|-++++|++...++|..-+-.=.. |+.++..+..+++.++-.-.++.|.
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 3344455555444332 22223334799999999999998988876654444 4455566667787766677777776
Q ss_pred c-C--ChhHHHHHHHHHHHhccCc-hhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHH-HhhCcH
Q 012813 306 E-G--HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEI-GDLGGV 377 (456)
Q Consensus 306 ~-~--~~~~~~~a~~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i-~~~g~i 377 (456)
. . +++-+..|+-.|..++.+- -++....+.+.+..-++.|.++ -++.=++-.|..|=.+-+..... .+.++.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 5 3 4567778888899998765 4677778889999999999875 23444666666665553333344 466889
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHhcc----ChhhHHHH-----------HHhhccHH----HHHHHhhcCCHHHHHH
Q 012813 378 SCMLRIIRESTCDRNKENCIAILHTICLS----DRTKWKAM-----------REEESTHG----TISKLAQDGTARAKRK 438 (456)
Q Consensus 378 ~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~----~~~~~~~~-----------~~~~g~~~----~L~~Ll~~~~~~~k~~ 438 (456)
..|..+|... .++++..|+-+|..+-.. .++....+ ..| ..+. .+..+++.|++-++..
T Consensus 645 ekL~~~LsD~-vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E-~~i~~~~~~ll~~vsdgsplvr~e 722 (1387)
T KOG1517|consen 645 EKLILLLSDP-VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIE-DLIIKGLMSLLALVSDGSPLVRTE 722 (1387)
T ss_pred HHHHHHhcCc-cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHH-HHHHhhHHHHHHHHhccchHHHHH
Confidence 9999999854 599999999999988774 22221111 111 2222 5566678888887776
Q ss_pred HHHHHHHH
Q 012813 439 ATGILERL 446 (456)
Q Consensus 439 A~~~L~~l 446 (456)
....|..+
T Consensus 723 v~v~ls~~ 730 (1387)
T KOG1517|consen 723 VVVALSHF 730 (1387)
T ss_pred HHHHHHHH
Confidence 66666544
No 159
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.07 Score=55.36 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=62.3
Q ss_pred CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC------c-cchhhcccC
Q 012813 223 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD------S-NKEVIGKSG 295 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~------~-~~~~i~~~G 295 (456)
+.|..++..|+..|+.|+.+-.--+ ......++.+++....+|.+|..+++-...-. + +...+. ..
T Consensus 209 ~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~ 281 (823)
T KOG2259|consen 209 DQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DA 281 (823)
T ss_pred CCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HH
Confidence 4577888888888887765332111 13455678888888999999987765443211 1 111111 34
Q ss_pred ccHHHHhccccCChhHHHHHHHHHHHhcc
Q 012813 296 ALKPLIDLLDEGHQSAMKDVASAIFNLCI 324 (456)
Q Consensus 296 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 324 (456)
++..+...+.+.+..++..|+.+|+.+-.
T Consensus 282 aF~~vC~~v~D~sl~VRV~AaK~lG~~~~ 310 (823)
T KOG2259|consen 282 AFSSVCRAVRDRSLSVRVEAAKALGEFEQ 310 (823)
T ss_pred HHHHHHHHHhcCceeeeehHHHHhchHHH
Confidence 67777888888888888888888886643
No 160
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.48 Score=49.46 Aligned_cols=209 Identities=15% Similarity=0.168 Sum_probs=121.7
Q ss_pred HHHHhc-CCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHH---ccccCc-
Q 012813 169 LLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL---NLSIHD- 243 (456)
Q Consensus 169 Lv~~L~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~---~Ls~~~- 243 (456)
|..... .+..++..|+..|..|.....-.+ -.....+..++ +.+..++..|+.++. |....+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~-------~~Y~~A~~~ls------D~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSK-------ACYSRAVKHLS------DDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccH-------HHHHHHHHHhc------chHHHHHHHHHHHHHHHHhcCCCcc
Confidence 444443 235677778877776665321111 23334556666 445677777755543 333111
Q ss_pred --c-hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-----------------------------------
Q 012813 244 --N-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD----------------------------------- 285 (456)
Q Consensus 244 --~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~----------------------------------- 285 (456)
+ +...... .+...+.+.+.+.+..+|..|+.+|..+-...
T Consensus 270 e~e~~e~kl~D--~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 270 ERESEEEKLKD--AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEW 347 (823)
T ss_pred cchhhhhhhHH--HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCc
Confidence 1 2222222 24555666666666666666665554331110
Q ss_pred ----------------ccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC-
Q 012813 286 ----------------SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG- 348 (456)
Q Consensus 286 ----------------~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~- 348 (456)
+....|+.+|+..++|.-|.++=-+++++|...++.|+.+...-. ..++..|++++.+.
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEI 423 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHH
Confidence 012234557788888888877777899999999999987543211 12678899988876
Q ss_pred -chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHH
Q 012813 349 -VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 402 (456)
Q Consensus 349 -~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 402 (456)
.++..|+.+|..++.+-..+ ..-++.++..|... +..+++....+|.+
T Consensus 424 ~~VRL~ai~aL~~Is~~l~i~-----eeql~~il~~L~D~-s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVHLAIR-----EEQLRQILESLEDR-SVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHHHheec-----HHHHHHHHHHHHhc-CHHHHHHHHHHHHh
Confidence 78888999998888662222 22345556666543 36666655555554
No 161
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.20 E-value=0.011 Score=59.27 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=44.7
Q ss_pred CccccccchhhccCcccCCCCccccHHHHHHHHh----cCCCCCCCCcccccCCCCc
Q 012813 74 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLK----AGNRTCPRTQQVLSHTILT 126 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~----~~~~~~P~~~~~l~~~~l~ 126 (456)
++..|-+|.++-.||+..+|.|+|||-||..+.. +++-+||.|..+++.+.-.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse 591 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSE 591 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccc
Confidence 3578999999999999999999999999988865 2356899999998876433
No 162
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.16 E-value=0.37 Score=52.24 Aligned_cols=175 Identities=15% Similarity=0.121 Sum_probs=109.8
Q ss_pred HHHHHhc---CCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc
Q 012813 168 SLLKKMS---ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 244 (456)
Q Consensus 168 ~Lv~~L~---~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 244 (456)
..++.|. .+.++++.|+.++..+......+-.... ...++.|+.-|. ++-.+-.|+.++..++..+-
T Consensus 572 ~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~--------nEiTRl~AvkAlt~Ia~S~l 641 (1233)
T KOG1824|consen 572 CTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLG--------NEITRLTAVKALTLIAMSPL 641 (1233)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHh--------chhHHHHHHHHHHHHHhccc
Confidence 3345553 2356778888887766543222211111 246667777776 45677788888887765553
Q ss_pred --hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCc--cchhhcccCccHHHHhccccCChhHHHHHHHHHH
Q 012813 245 --NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 320 (456)
Q Consensus 245 --~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~--~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~ 320 (456)
+...+.. .+++.|...++......+.....++-.|..+.. ...... .-++..|-.|+...+..+...|...|.
T Consensus 642 ~i~l~~~l~--~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~L~ 718 (1233)
T KOG1824|consen 642 DIDLSPVLT--EILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAFLT 718 (1233)
T ss_pred eeehhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3333332 367888888877666777777777766654321 111111 234555666777778889999999999
Q ss_pred HhccCchhhHHHHhcCcHHHHHHHHcCCchHHHHH
Q 012813 321 NLCITHENKARAVRDGGVSVILKKIMDGVHVDELL 355 (456)
Q Consensus 321 ~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~ 355 (456)
.+.........-+..-.++.++.+++++-++-.|+
T Consensus 719 tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al 753 (1233)
T KOG1824|consen 719 TLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGAL 753 (1233)
T ss_pred HHHhcccHHHHHHhhhhHHHHHHHhhCccccchHH
Confidence 99888776665566678899999998874443333
No 163
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.11 E-value=1.5 Score=45.16 Aligned_cols=270 Identities=10% Similarity=0.068 Sum_probs=153.9
Q ss_pred hHHHHHHHhcCC--chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhh-ccccccccCCCChhhHHHHHHHHHc-cc
Q 012813 165 HFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS-PLSESKCENGINPNLQEDVITTLLN-LS 240 (456)
Q Consensus 165 ~i~~Lv~~L~~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~~~~~~a~~~L~~-Ls 240 (456)
.++.++...... ...+.+++..+.+.+. +......+..+..++-.++. .+++ ..+..++-.|+.+|.+ |-
T Consensus 134 lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce-s~~Pe~li~~sN~il~aiv~ga~k~-----et~~avRLaaL~aL~dsl~ 207 (858)
T COG5215 134 LMEEMVRNVGDEQPVSGKCESLGICGYHCE-SEAPEDLIQMSNVILFAIVMGALKN-----ETTSAVRLAALKALMDSLM 207 (858)
T ss_pred HHHHHHHhccccCchHhHHHHHHHHHHHhh-ccCHHHHHHHhhHHHHHHHHhhccc-----CchHHHHHHHHHHHHHHHH
Confidence 344455555322 4567788888988887 44444555542333333332 3332 3457788888888877 32
Q ss_pred cCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC-CccchhhcccCccHHHHhccccCChhHHHHHHHHH
Q 012813 241 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 319 (456)
Q Consensus 241 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL 319 (456)
.-..|--.-.+.+.++....+.-+..+.+++..+.++|..+... ...-....+.-.......-+++.+.++.-.|...-
T Consensus 208 fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfW 287 (858)
T COG5215 208 FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFW 287 (858)
T ss_pred HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 21111111112223444455666677889999999998887642 23223334444445555667788888888887766
Q ss_pred HHhccCc-h----------------hhHHHHhcCcHHHHHHHHcC--C-------chHHHHH---HHHHHhhCCHHHHHH
Q 012813 320 FNLCITH-E----------------NKARAVRDGGVSVILKKIMD--G-------VHVDELL---AILAMLSTNHRAVEE 370 (456)
Q Consensus 320 ~~L~~~~-~----------------~~~~~v~~g~v~~Lv~lL~~--~-------~~~~~a~---~~L~~L~~~~~~~~~ 370 (456)
..+|... + +-.+..-.+++|.|+++|.. + .....|. .....++.+.
T Consensus 288 sticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~----- 362 (858)
T COG5215 288 STICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK----- 362 (858)
T ss_pred HHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH-----
Confidence 5665432 1 11111123578999999963 1 2333333 3333333322
Q ss_pred HHhhCcHHHHHHHhhh---cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 371 IGDLGGVSCMLRIIRE---STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 371 i~~~g~i~~Lv~ll~~---~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
.+..++.++.. ..+-.-++.|+.++..+-.+....+..-+. ..+++.+..+..+.+--+|..++|.+-.++
T Consensus 363 -----i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~ia 436 (858)
T COG5215 363 -----IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIA 436 (858)
T ss_pred -----hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHH
Confidence 22223333332 223567888999998877665443333333 366677776666555568999999999998
Q ss_pred cchh
Q 012813 448 RTVN 451 (456)
Q Consensus 448 ~~~~ 451 (456)
.|..
T Consensus 437 d~va 440 (858)
T COG5215 437 DHVA 440 (858)
T ss_pred HHHH
Confidence 8743
No 164
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.04 E-value=0.33 Score=44.68 Aligned_cols=152 Identities=17% Similarity=0.116 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc-hhHHHhcCCCCHHH
Q 012813 180 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL 258 (456)
Q Consensus 180 ~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~~i~~ 258 (456)
...|+..|..++. .++.|..|.+ +..--.|-.+|..... +...+-.+-.++++|..|...++ ....+....+++|.
T Consensus 96 VcnaL~LlQcvAS-HpdTr~~FL~-A~iPlylYpfL~Tt~~-~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 96 VCNALALLQCVAS-HPDTRRAFLR-AHIPLYLYPFLNTTSK-SRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred HHHHHHHHHHHhc-CcchHHHHHH-ccChhhhHHhhhcccc-CCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 4567777777777 5888888887 5544445556653321 12345677889999999987775 33333334469999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc----cC----cc-HHHHhccccCChhHHHHHHHHHHHhccCchhh
Q 012813 259 LMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK----SG----AL-KPLIDLLDEGHQSAMKDVASAIFNLCITHENK 329 (456)
Q Consensus 259 Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~----~G----~i-~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~ 329 (456)
.++.++.|+...+..|+-.+..+-.++..-..+-. -- .+ ..+.++.+.++..+.++++++..+|+.++..|
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999888888777765444332 01 11 22233445678999999999999999999877
Q ss_pred HHHHh
Q 012813 330 ARAVR 334 (456)
Q Consensus 330 ~~~v~ 334 (456)
..+..
T Consensus 253 ~aL~~ 257 (293)
T KOG3036|consen 253 AALRS 257 (293)
T ss_pred HHHHh
Confidence 76543
No 165
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=1 Score=47.39 Aligned_cols=92 Identities=7% Similarity=0.104 Sum_probs=66.7
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHH
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM 414 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~ 414 (456)
++..|-++|.+. +++--|+.-++.||+.....+++..+ ...++..|+...+-.++..|+.+|..+|..+. .+.+
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~N--ak~I 405 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN--AKQI 405 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhh--HHHH
Confidence 456666777654 77888999999999987777777766 67788888866667899999999999998764 3466
Q ss_pred HHhhccHHHHHHHhhcCCHHHHHH
Q 012813 415 REEESTHGTISKLAQDGTARAKRK 438 (456)
Q Consensus 415 ~~~~g~~~~L~~Ll~~~~~~~k~~ 438 (456)
+. -|+..+.+.+..+|+.
T Consensus 406 V~------elLqYL~tAd~siree 423 (938)
T KOG1077|consen 406 VA------ELLQYLETADYSIREE 423 (938)
T ss_pred HH------HHHHHHhhcchHHHHH
Confidence 53 2344444455555544
No 166
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.83 E-value=0.26 Score=46.20 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhh
Q 012813 351 VDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 429 (456)
Q Consensus 351 ~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~ 429 (456)
...|+.+|.-+|- +|..|..+.+..++..|+.++....++.++..++.+|..+...++... ..+++.+++..+..++.
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~-r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQ-RDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHH-HHHHHhCCHHHHHHHHc
Confidence 4447788888887 789999999999999999999655568899999999998888887664 56777899999999987
Q ss_pred cC--CHHHHHHHHHHHHHH
Q 012813 430 DG--TARAKRKATGILERL 446 (456)
Q Consensus 430 ~~--~~~~k~~A~~~L~~l 446 (456)
+. +..+|.|....|--+
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 65 556899999888754
No 167
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.78 E-value=0.83 Score=43.70 Aligned_cols=221 Identities=11% Similarity=0.070 Sum_probs=146.9
Q ss_pred hhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCccchhhcc-cCccHHHHh
Q 012813 226 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLID 302 (456)
Q Consensus 226 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~aL~~Ls~~~~~~~~i~~-~G~i~~Lv~ 302 (456)
+-.+--|+..|.++....+.|..+-.....-..++.+++.. ..+.+-+..-.++-|+......+.|-. ...+.-|++
T Consensus 163 ~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~ 242 (432)
T COG5231 163 FLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIA 242 (432)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 44566788889999888887776655443455678888764 578899999888988887766644443 357788888
Q ss_pred ccccC-ChhHHHHHHHHHHHhccCc--hhhHHHHhcCcHHHHHHHHcCC-----chHHH---HHHH--------------
Q 012813 303 LLDEG-HQSAMKDVASAIFNLCITH--ENKARAVRDGGVSVILKKIMDG-----VHVDE---LLAI-------------- 357 (456)
Q Consensus 303 lL~~~-~~~~~~~a~~aL~~L~~~~--~~~~~~v~~g~v~~Lv~lL~~~-----~~~~~---a~~~-------------- 357 (456)
+++.. ...+.+-++..+.|++.-. .--..+.-.|-+..-++.|... +++.. .-..
T Consensus 243 iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y 322 (432)
T COG5231 243 IVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNY 322 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 88765 5567888999999998722 2333344445455555555432 11111 1111
Q ss_pred HHHh-----hCC---------HHHHHHHHhh--CcHHHHHHHhhhcCChh-HHHHHHHHHHHHhccChhhHHHHHHhhcc
Q 012813 358 LAML-----STN---------HRAVEEIGDL--GGVSCMLRIIRESTCDR-NKENCIAILHTICLSDRTKWKAMREEEST 420 (456)
Q Consensus 358 L~~L-----~~~---------~~~~~~i~~~--g~i~~Lv~ll~~~~~~~-~~~~A~~~L~~l~~~~~~~~~~~~~~~g~ 420 (456)
+..| +-. +.+...+.+. ..+..|.++++... +. .-.-|+.=+..+....|+. ..++...|+
T Consensus 323 ~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~-~nt~i~vAc~Di~~~Vr~~PE~-~~vl~Kyg~ 400 (432)
T COG5231 323 LNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNN-PNTWICVACSDIFQLVRASPEI-NAVLSKYGV 400 (432)
T ss_pred HHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCC-CCceEeeeHhhHHHHHHhCchH-HHHHHHhhh
Confidence 1111 111 2344455443 35788889999643 33 3444677777777777764 566666799
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 421 HGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 421 ~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
-+.++.|+.+.++++|-.|..+++.+-.
T Consensus 401 k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 401 KEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 9999999999999999999999987643
No 168
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.69 E-value=8.2 Score=42.46 Aligned_cols=277 Identities=14% Similarity=0.131 Sum_probs=160.7
Q ss_pred cccchhhhhHHHHHHHhcCCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHH
Q 012813 157 GITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTL 236 (456)
Q Consensus 157 ~~~~~~~~~i~~Lv~~L~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L 236 (456)
|....+.++.+..|+.|.++.+... --.....+ ...+.+ .|++..|++++.+-.. ...+.+.....+..|
T Consensus 77 R~~Gl~geAtE~~v~~l~~~~~~~~-d~e~~~~~-------~~v~~~-~gGL~~ll~~l~~~~~-~~~~~~ll~~llkLL 146 (802)
T PF13764_consen 77 RMRGLDGEATEEFVESLEDDSEEEE-DPEQEFKI-------ASVLAE-CGGLEVLLSRLDSIRD-FSRGRELLQVLLKLL 146 (802)
T ss_pred eecCCCCccchhhHhhccCcccccc-CHHHHHHH-------HHHhhc-CCCHHHHHHHHHhhcc-ccCcHHHHHHHHHHH
Confidence 3334455666777888854311100 00001111 123445 8999999998874321 022456667788888
Q ss_pred HccccCcchhHHHhcCCCCHHHHHHHHh----cCC----HHHHHHHHHHHHHhccCC---ccchhh--cc--------cC
Q 012813 237 LNLSIHDNNKKLVAETPMVIPLLMDALR----SGT----IETRSNAAAALFTLSALD---SNKEVI--GK--------SG 295 (456)
Q Consensus 237 ~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~----~~~----~~~~~~aa~aL~~Ls~~~---~~~~~i--~~--------~G 295 (456)
..++.-..||+.+... ++++.|++.|. .++ .++-+....++-.|.... +..... .. ..
T Consensus 147 ~~c~Kv~~NR~~Ll~~-~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~ 225 (802)
T PF13764_consen 147 RYCCKVKVNRRALLEL-NALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKE 225 (802)
T ss_pred HHHHhhHHHHHHHHHc-CCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHH
Confidence 8888898999999986 58998888774 333 444444444444433211 110000 11 12
Q ss_pred ccHHHHhccccC----ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc----CC---chHHHHHHHHHHhhC-
Q 012813 296 ALKPLIDLLDEG----HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM----DG---VHVDELLAILAMLST- 363 (456)
Q Consensus 296 ~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~----~~---~~~~~a~~~L~~L~~- 363 (456)
-+..|++.+.+. ++.+....+++|-+|+...+....++ |..+-..+. +. .--..-+..++.++.
T Consensus 226 ~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L----v~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~ 301 (802)
T PF13764_consen 226 QVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL----VEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEG 301 (802)
T ss_pred HHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH----HHHHHHhcChhhcccccCchHHHHHHHHHHHHhc
Confidence 356666666543 67889999999999998877665542 222222222 11 111223444455543
Q ss_pred ---C---HHHHHHHHhhCcHHHHHHHhhhcC-------ChhH--------HHHHHHHHHHHhccChhhHHHHHHhhccHH
Q 012813 364 ---N---HRAVEEIGDLGGVSCMLRIIREST-------CDRN--------KENCIAILHTICLSDRTKWKAMREEESTHG 422 (456)
Q Consensus 364 ---~---~~~~~~i~~~g~i~~Lv~ll~~~~-------~~~~--------~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~ 422 (456)
+ ..-|+.+++.|.+...+..|...- ++.- -..++.+|.-|+.+... .+..+. ...++
T Consensus 302 I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~-tQ~~~~-~~~l~ 379 (802)
T PF13764_consen 302 IPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEP-TQLLIA-EQLLP 379 (802)
T ss_pred CCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHH-HHHHHH-hhHHH
Confidence 2 456788999999998887776521 2222 33478888888887764 345554 47778
Q ss_pred HHHHHhhcC-CHHHHHHHHHHHHHHhcch
Q 012813 423 TISKLAQDG-TARAKRKATGILERLKRTV 450 (456)
Q Consensus 423 ~L~~Ll~~~-~~~~k~~A~~~L~~l~~~~ 450 (456)
.+..|-+.. +..+=..|-.+|..++..+
T Consensus 380 ~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 380 LLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 888876654 4446566777776666544
No 169
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.67 E-value=0.083 Score=49.71 Aligned_cols=44 Identities=32% Similarity=0.649 Sum_probs=37.4
Q ss_pred cccccchhhccC---cccCCCCccccHHHHHHHHhcCC--CCCCCCccc
Q 012813 76 FKCPLSKELMRD---PVILASGQTFDRPYIQRWLKAGN--RTCPRTQQV 119 (456)
Q Consensus 76 f~Cpi~~~~m~d---Pv~l~~g~~~~r~~I~~~~~~~~--~~~P~~~~~ 119 (456)
|+||+.++.-+| ||++.|||.+-+.+..+--.+|. ..||.|...
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 899999999877 89999999999999988877764 459998543
No 170
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=1.7 Score=45.81 Aligned_cols=259 Identities=13% Similarity=0.086 Sum_probs=144.9
Q ss_pred HHHHHhc-CCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchh
Q 012813 168 SLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 246 (456)
Q Consensus 168 ~Lv~~L~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 246 (456)
.+-..|. .++-.+.-|+.++.++.. .++++.+.. -|+ .+|.++. ...-++..|+-.|+.|-...+
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~---DI~---KlLvS~~----~~~~vkqkaALclL~L~r~sp-- 180 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFAD---DIP---KLLVSGS----SMDYVKQKAALCLLRLFRKSP-- 180 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhh---hhH---HHHhCCc----chHHHHHHHHHHHHHHHhcCc--
Confidence 3444443 445667778888888765 455555554 233 4455442 234455555555555543322
Q ss_pred HHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC--ccchhhcccCccHHHHhcccc-------------CChhH
Q 012813 247 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDE-------------GHQSA 311 (456)
Q Consensus 247 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~--~~~~~i~~~G~i~~Lv~lL~~-------------~~~~~ 311 (456)
-++..++....++.+|.+.+..+.-++...+--|+... +.+..+.. ++..|..+... +.|=+
T Consensus 181 -Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL 257 (938)
T KOG1077|consen 181 -DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWL 257 (938)
T ss_pred -cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHH
Confidence 12233456777888888877777777777777676533 23332221 22222222211 24556
Q ss_pred HHHHHHHHHHhccCch--hhHHHHhcCcHHHHHHHHcCC----chHH-----HHHHHHHHhhCC-HHHHHHHHhhCcHHH
Q 012813 312 MKDVASAIFNLCITHE--NKARAVRDGGVSVILKKIMDG----VHVD-----ELLAILAMLSTN-HRAVEEIGDLGGVSC 379 (456)
Q Consensus 312 ~~~a~~aL~~L~~~~~--~~~~~v~~g~v~~Lv~lL~~~----~~~~-----~a~~~L~~L~~~-~~~~~~i~~~g~i~~ 379 (456)
...++++|.++-...+ .|.+..+ +...++...+++ ++++ ..+-=..+|+.+ ....+.+.+ ++..
T Consensus 258 ~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~ 333 (938)
T KOG1077|consen 258 QVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQ 333 (938)
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHH
Confidence 6677777777643332 3333322 344444444422 2221 122222334433 222333333 3677
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhh-cCCHHHHHHHHHHHHHHhcchhc
Q 012813 380 MLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ-DGTARAKRKATGILERLKRTVNL 452 (456)
Q Consensus 380 Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~-~~~~~~k~~A~~~L~~l~~~~~~ 452 (456)
|-+++.+.. ...|--|+..++.|+...... ..+... ...++..+. ..+..++++|..+|..||.....
T Consensus 334 Lg~fls~rE-~NiRYLaLEsm~~L~ss~~s~--davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Na 402 (938)
T KOG1077|consen 334 LGQFLSHRE-TNIRYLALESMCKLASSEFSI--DAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA 402 (938)
T ss_pred HHHHhhccc-ccchhhhHHHHHHHHhccchH--HHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhH
Confidence 888888654 778888999999998876543 555432 566666676 45778999999999999876543
No 171
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.64 E-value=2.4 Score=39.73 Aligned_cols=219 Identities=14% Similarity=0.080 Sum_probs=139.2
Q ss_pred ChhhHHHHHHHHHcc-ccCcchhHHHhcCCCCHHHHHH-HHh------cCC--H---HHHHHHHHHHHHhccCCccchhh
Q 012813 225 NPNLQEDVITTLLNL-SIHDNNKKLVAETPMVIPLLMD-ALR------SGT--I---ETRSNAAAALFTLSALDSNKEVI 291 (456)
Q Consensus 225 ~~~~~~~a~~~L~~L-s~~~~~~~~i~~~~~~i~~Lv~-lL~------~~~--~---~~~~~aa~aL~~Ls~~~~~~~~i 291 (456)
+++.+++|+.-|..- ...++-...+-.+.|.+..|+. ++. .++ . .-..+|.+.|..++.+++.+..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 477888888777654 2333445566667777766542 222 221 1 22334556667788899999999
Q ss_pred cccCccHHHHhccccCC-----hhHHHHHHHHHHHhccCc--hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhh
Q 012813 292 GKSGALKPLIDLLDEGH-----QSAMKDVASAIFNLCITH--ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLS 362 (456)
Q Consensus 292 ~~~G~i~~Lv~lL~~~~-----~~~~~~a~~aL~~L~~~~--~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~ 362 (456)
.++...-.|...|...+ +.++-.++++++.|...+ +...-+.+...+|..++.|..+ -.+..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99888877777776532 456777899999998744 4445556789999999999876 34666888888888
Q ss_pred CCHHHHHHHHhh--------CcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHH-HHH----Hhh
Q 012813 363 TNHRAVEEIGDL--------GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT-ISK----LAQ 429 (456)
Q Consensus 363 ~~~~~~~~i~~~--------g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~-L~~----Ll~ 429 (456)
.++.|.+.+++. .++..+|.-+....+++.-++.+++-..|+.+.... ..+.. ..|. |.. -.-
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar--~aL~~--~LP~~Lrd~~f~~~l 243 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAR--EALRQ--CLPDQLRDGTFSNIL 243 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHH--HHHHH--HS-GGGTSSTTTTGG
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHH--HHHHH--hCcHHHhcHHHHHHH
Confidence 888777666433 134444544444556999999999999999987643 44421 2221 111 112
Q ss_pred cCCHHHHHHHHHHHHHHh
Q 012813 430 DGTARAKRKATGILERLK 447 (456)
Q Consensus 430 ~~~~~~k~~A~~~L~~l~ 447 (456)
.+++.+|+--..++.|+.
T Consensus 244 ~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 244 KDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp CS-HHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHhc
Confidence 236678888888888775
No 172
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=0.021 Score=51.92 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=41.4
Q ss_pred CCccccccchhhccCcc----cCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCc
Q 012813 73 PEEFKCPLSKELMRDPV----ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 126 (456)
Q Consensus 73 p~~f~Cpi~~~~m~dPv----~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~ 126 (456)
-..|+|||++-.|.+-. +-+|||.|.-+.+++.-. .+|++|++++..++++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika---s~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA---SVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhh---ccccccCCcccccCeE
Confidence 34699999999998864 678999998888777653 5799999999877654
No 173
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.62 E-value=0.097 Score=41.51 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=50.3
Q ss_pred cCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHh--cCcHHHHHHHHcCC-chHHHHHHHHHHhh
Q 012813 294 SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR--DGGVSVILKKIMDG-VHVDELLAILAMLS 362 (456)
Q Consensus 294 ~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~--~g~v~~Lv~lL~~~-~~~~~a~~~L~~L~ 362 (456)
.-++++++..+.+.+.+++..|+.+|+|++.... ..+.. ..+...|.+++.++ .-+..++..|.+|-
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 3578999999999999999999999999986543 33332 35677888888776 44566667776664
No 174
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.055 Score=51.61 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=41.4
Q ss_pred CCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 73 PEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 73 p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
.++-+||||.-=--..|+.||||.-|..||.+|+.+ ...|-||+....
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 367899999977677899999999999999999997 688999976554
No 175
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.029 Score=52.42 Aligned_cols=47 Identities=17% Similarity=0.493 Sum_probs=38.0
Q ss_pred cccccchhhcc--Ccc-cCCCCccccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 76 FKCPLSKELMR--DPV-ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 76 f~Cpi~~~~m~--dPv-~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
.-|-||++=+. |.+ .+||.|.|-+.||.+|+..-...||+||.++.+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 56999986652 333 689999999999999998545689999988754
No 176
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.34 E-value=1.6 Score=38.73 Aligned_cols=93 Identities=22% Similarity=0.192 Sum_probs=72.7
Q ss_pred ChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcc
Q 012813 225 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL 304 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL 304 (456)
++.++.+++.++.-|+..-+ .+++ ..+|.+...|+++++.+|+.|+.+|..|...+.-|.. ...+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---~~ve--~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---NLVE--PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---HHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 46788999999988875543 3343 2688899999999999999999999999876543322 22347777888
Q ss_pred ccCChhHHHHHHHHHHHhccC
Q 012813 305 DEGHQSAMKDVASAIFNLCIT 325 (456)
Q Consensus 305 ~~~~~~~~~~a~~aL~~L~~~ 325 (456)
.+.+++++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999998765
No 177
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.31 E-value=0.85 Score=43.66 Aligned_cols=219 Identities=13% Similarity=0.072 Sum_probs=144.4
Q ss_pred hHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHH
Q 012813 179 DQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPL 258 (456)
Q Consensus 179 ~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~ 258 (456)
.+.-|+.++.++.. .++.|..+-.+..+-..++.+++++. .+.+.|-+.+-.+.-++.+++....+-.....+.-
T Consensus 165 Trlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~v----g~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d 239 (432)
T COG5231 165 TRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYV----GVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhh----hhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 45567888888887 46666655432556677888888653 25778888998888899888776444433345667
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHhccCCccchhhcc---cCccHHHHhccccC---ChhHHHHHHH-------------H
Q 012813 259 LMDALRSGT-IETRSNAAAALFTLSALDSNKEVIGK---SGALKPLIDLLDEG---HQSAMKDVAS-------------A 318 (456)
Q Consensus 259 Lv~lL~~~~-~~~~~~aa~aL~~Ls~~~~~~~~i~~---~G~i~~Lv~lL~~~---~~~~~~~a~~-------------a 318 (456)
|+.+.+... ..+.+-+++.+.|++. ...+..|.. .|-+..-+++|... +.+.+..--. .
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~ 318 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH
Confidence 788887763 5678888889999886 223344433 45566677777543 2222211100 0
Q ss_pred ----HH-----HhccCc---------hhhHHHHhc--CcHHHHHHHHcCC--c-hHHHHHHHHHHhhC-CHHHHHHHHhh
Q 012813 319 ----IF-----NLCITH---------ENKARAVRD--GGVSVILKKIMDG--V-HVDELLAILAMLST-NHRAVEEIGDL 374 (456)
Q Consensus 319 ----L~-----~L~~~~---------~~~~~~v~~--g~v~~Lv~lL~~~--~-~~~~a~~~L~~L~~-~~~~~~~i~~~ 374 (456)
+. -|+-++ .|-..+.+. ..+..|.++++.. . ....|+.=+..+.. .|+++..+...
T Consensus 319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky 398 (432)
T COG5231 319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKY 398 (432)
T ss_pred HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHh
Confidence 01 112111 244445433 5688899999854 2 44456655666665 69999999999
Q ss_pred CcHHHHHHHhhhcCChhHHHHHHHHHHHHh
Q 012813 375 GGVSCMLRIIRESTCDRNKENCIAILHTIC 404 (456)
Q Consensus 375 g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~ 404 (456)
|+=+.++.++.+++ ++++-.|+.++..+-
T Consensus 399 g~k~~im~L~nh~d-~~VkfeAl~a~q~~i 427 (432)
T COG5231 399 GVKEIIMNLINHDD-DDVKFEALQALQTCI 427 (432)
T ss_pred hhHHHHHHHhcCCC-chhhHHHHHHHHHHH
Confidence 99999999999765 999999999988654
No 178
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=2.1 Score=47.22 Aligned_cols=251 Identities=16% Similarity=0.189 Sum_probs=150.4
Q ss_pred HHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHH
Q 012813 184 AKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL 263 (456)
Q Consensus 184 ~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL 263 (456)
-.+|..+-+.+.+|...+.+ +.++..++.++- +.+-+...+.++..|-..+... +-. .-+-.+++.|
T Consensus 663 wDcLisllKnnteNqklFre-anGvklilpfli--------ndehRSslLrivscLitvdpkq--vhh--qelmalVdtL 729 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFRE-ANGVKLILPFLI--------NDEHRSSLLRIVSCLITVDPKQ--VHH--QELMALVDTL 729 (2799)
T ss_pred HHHHHHHHhccchhhHHHHh-hcCceEEEEeee--------chHHHHHHHHHHHHHhccCccc--ccH--HHHHHHHHHH
Confidence 34577777888999999999 888888888885 2344555566665554443311 100 1244578888
Q ss_pred hcCC------------HHHHHHHHHHHHHhcc-CCccchhhcccCccHHHHhcccc----------CChhHHHHHHHHHH
Q 012813 264 RSGT------------IETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDE----------GHQSAMKDVASAIF 320 (456)
Q Consensus 264 ~~~~------------~~~~~~aa~aL~~Ls~-~~~~~~~i~~~G~i~~Lv~lL~~----------~~~~~~~~a~~aL~ 320 (456)
++|- ........++++...- +...+..++++|++..|...|.. +|..+--.-...|+
T Consensus 730 ksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilF 809 (2799)
T KOG1788|consen 730 KSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILF 809 (2799)
T ss_pred HhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHH
Confidence 7752 1345556677777664 44667788899999999887743 12222222222222
Q ss_pred ---H--hccCchhhHHHHhcCcHHHHHHHHcC--------------------------CchH-H-HHHHHHHHhhC----
Q 012813 321 ---N--LCITHENKARAVRDGGVSVILKKIMD--------------------------GVHV-D-ELLAILAMLST---- 363 (456)
Q Consensus 321 ---~--L~~~~~~~~~~v~~g~v~~Lv~lL~~--------------------------~~~~-~-~a~~~L~~L~~---- 363 (456)
. .|.+..|+..+-..=.-+.+..+|.. +.+. | .|+.-+-.+-.
T Consensus 810 rlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifa 889 (2799)
T KOG1788|consen 810 RLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFA 889 (2799)
T ss_pred HHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceee
Confidence 2 23444555443221112223333221 1111 1 12222222211
Q ss_pred --C-----HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh---hcCCH
Q 012813 364 --N-----HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA---QDGTA 433 (456)
Q Consensus 364 --~-----~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll---~~~~~ 433 (456)
. ...++.+..+|++..|...+-. .+++.|..-+.+|..+++.++.. +......|-++.|.++. .+|+.
T Consensus 890 vntPsGqfnpdk~~iynagavRvlirslLl-nypK~qlefl~lleSlaRaspfn-aelltS~gcvellleIiypflsgss 967 (2799)
T KOG1788|consen 890 VNTPSGQFNPDKQKIYNAGAVRVLIRSLLL-NYPKLQLEFLNLLESLARASPFN-AELLTSAGCVELLLEIIYPFLSGSS 967 (2799)
T ss_pred eccCCCCcCchHhhhcccchhHHHHHHHHh-hChHHHHHHHHHHHHHhhcCCCc-hhhhhcccHHHHHHHHhhhhhcCCc
Confidence 0 2345778889999999877664 35999999999999999988754 45666678888888874 56766
Q ss_pred HHHHHHHHHHHHHhcc
Q 012813 434 RAKRKATGILERLKRT 449 (456)
Q Consensus 434 ~~k~~A~~~L~~l~~~ 449 (456)
..-..|..|+.+|+.+
T Consensus 968 pfLshalkIvemLgay 983 (2799)
T KOG1788|consen 968 PFLSHALKIVEMLGAY 983 (2799)
T ss_pred hHhhccHHHHHHHhhc
Confidence 7777778888777654
No 179
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.28 E-value=0.02 Score=50.01 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=39.8
Q ss_pred cccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 76 FKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 76 f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
|.|-||..-++.||+..|||.||-.|-.+-... .+.|-+|+....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence 999999999999999999999999998887776 578999987653
No 180
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.28 E-value=1.1 Score=46.56 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=89.8
Q ss_pred HHHHHHHhc-CCchhHHHHHHHHHHHhhcCchh--hhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 166 FLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSF--RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 166 i~~Lv~~L~-~~~~~~~~a~~~L~~L~~~~~~~--r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
+..++..|. .++.++..|+.....++.--..+ -+.+.. .|. .|-.-|. ...+++.-..+.++..+...
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~k-lg~--iLyE~lg------e~ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAK-LGN--ILYENLG------EDYPEVLGSILKAICSIYSV 676 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHH-HhH--HHHHhcC------cccHHHHHHHHHHHHHHhhh
Confidence 445566664 45778888888776666521100 011111 221 1223333 44677777666666555332
Q ss_pred cchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc-cCccHHHHhccccCChhHHHHHHHHHHH
Q 012813 243 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFN 321 (456)
Q Consensus 243 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~a~~aL~~ 321 (456)
...+..---..+.+|.|..+|++....+..+....+..++.......-..+ --+.-.|+++|++-+.+.+++|..+++.
T Consensus 677 ~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 677 HRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGC 756 (975)
T ss_pred hcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence 221111011236899999999999999999999999888875433211111 1234567888888899999999999887
Q ss_pred hcc
Q 012813 322 LCI 324 (456)
Q Consensus 322 L~~ 324 (456)
++.
T Consensus 757 Is~ 759 (975)
T COG5181 757 ISR 759 (975)
T ss_pred HHh
Confidence 754
No 181
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.27 E-value=0.31 Score=51.46 Aligned_cols=155 Identities=12% Similarity=0.110 Sum_probs=104.8
Q ss_pred CccHHHHhccccCChhHHHHHHHHHHHhccCchhhHH---HHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHH
Q 012813 295 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKAR---AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVE 369 (456)
Q Consensus 295 G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~---~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~ 369 (456)
.++..++..|.+.++.++..|+.++..|+.--.+|.. +...|. .|.+.|... ++.-..+++|..++..-.--+
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 3567778888999999999999999988765444432 223343 366767643 555555555555553211000
Q ss_pred HH-HhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 370 EI-GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 370 ~i-~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
.. --.+.+|.|.-+|++.+ .+++++++.++..||.++++.. ...+=+.+---|++++.+.+..+++.|...+-.+++
T Consensus 877 m~pPi~dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v-~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYV-SAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred cCCChhhhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 00 01256899999999876 9999999999999999988642 222223444467777888888999999998888877
Q ss_pred chhcc
Q 012813 449 TVNLT 453 (456)
Q Consensus 449 ~~~~~ 453 (456)
.-.++
T Consensus 955 aIGPq 959 (1172)
T KOG0213|consen 955 AIGPQ 959 (1172)
T ss_pred hcCHH
Confidence 65443
No 182
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.26 E-value=0.79 Score=48.53 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=85.7
Q ss_pred CCchhHHHHHHHHHHHhhcCchh--hhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcC
Q 012813 175 ATLPDQTEAAKELRLLTKRMPSF--RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET 252 (456)
Q Consensus 175 ~~~~~~~~a~~~L~~L~~~~~~~--r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 252 (456)
.++.++.+|+..+..++.--..+ -+.+.. .|.| |-..|. .+.+++.-..+.+|..+...-.--+..--.
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~-lGvv--LyEylg------eeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGH-LGVV--LYEYLG------EEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccHHHHHHH-hhHH--HHHhcC------cccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 45778888888887776531111 111222 3322 334444 456777766665555442211100011112
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc-cCccHHHHhccccCChhHHHHHHHHHHHhcc
Q 012813 253 PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCI 324 (456)
Q Consensus 253 ~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 324 (456)
.+.+|.|..+|++....+++++...+..++....-.....+ --+.-.|+++|++.+.+.+.+|..+++.++.
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 25889999999999999999999999999865432111111 1234567888888889999999999988753
No 183
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.24 E-value=1.9 Score=46.69 Aligned_cols=181 Identities=12% Similarity=0.055 Sum_probs=117.9
Q ss_pred ChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcc
Q 012813 225 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL 304 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL 304 (456)
.+-++..|++++....+.. ...-..++++..|+.+....+.++......+|+..+..+.-...-.+.-+.|.++.+.
T Consensus 504 ~~~~ki~a~~~~~~~~~~~---vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCKVK---VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF 580 (1005)
T ss_pred CCchhHHHHHHHHhccCce---eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence 3455666666655544111 1111123455666676666678888888889999888776666666667788888877
Q ss_pred cc--CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC------chHHHHHHHHHHhhCC--HHHHHHHHhh
Q 012813 305 DE--GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG------VHVDELLAILAMLSTN--HRAVEEIGDL 374 (456)
Q Consensus 305 ~~--~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~~--~~~~~~i~~~ 374 (456)
.. ++|.+...+-.++..|+....+..-+.+ -.+|.|+..|..+ ....-++.+|..+.++ ++--+.+...
T Consensus 581 ~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~ 659 (1005)
T KOG2274|consen 581 LKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY 659 (1005)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 54 6788888888888888875554444433 3799999999843 4566677777767664 2222233222
Q ss_pred CcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhh
Q 012813 375 GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK 410 (456)
Q Consensus 375 g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~ 410 (456)
+.|++.++.-++++..+-.++-.+|..+-..+.+.
T Consensus 660 -~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq 694 (1005)
T KOG2274|consen 660 -AFPAVAKITLHSDDHETLQNATECLRALISVTLEQ 694 (1005)
T ss_pred -HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence 46777777666655777777888888777665543
No 184
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.02 E-value=1.7 Score=47.10 Aligned_cols=215 Identities=11% Similarity=0.075 Sum_probs=141.4
Q ss_pred CChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCccchhhc---ccCccHH
Q 012813 224 INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIG---KSGALKP 299 (456)
Q Consensus 224 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~aL~~Ls~~~~~~~~i~---~~G~i~~ 299 (456)
+.|...-.|..++...+........+... .+...+..+. +..+.++..|++++...+ +.++. ..+++..
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-----~~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYC-----KVKVLLSLQPMILDG 534 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhcc-----CceeccccchHHHHH
Confidence 34555556777776555443322222221 2333344443 335667778887777776 22222 2588899
Q ss_pred HHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc----CCchHHHHHHHHHHhhCCHHHHHHHHhhC
Q 012813 300 LIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM----DGVHVDELLAILAMLSTNHRAVEEIGDLG 375 (456)
Q Consensus 300 Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~g 375 (456)
|.++....+.++....+.+|...+..+.......+....|.++.+.. ++-+...+-.++..|+....+.+-+.+.
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~- 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER- 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH-
Confidence 99999888889999999999999988877777777777887777654 3445566666666666544444433322
Q ss_pred cHHHHHHHhhhcC---ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHH-hhcCCHHHHHHHHHHHHHHh
Q 012813 376 GVSCMLRIIREST---CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL-AQDGTARAKRKATGILERLK 447 (456)
Q Consensus 376 ~i~~Lv~ll~~~~---~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~L-l~~~~~~~k~~A~~~L~~l~ 447 (456)
.||.|+.+|+... ......-|+.+|..+.++.+......+.. -..+++.+. +++++..+-..|.++|+.+-
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 6999999998532 24566778888887777766544444433 456677765 67888889999999999764
No 185
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=0.36 Score=51.17 Aligned_cols=240 Identities=15% Similarity=0.164 Sum_probs=136.2
Q ss_pred hHHHHHHHhc-CCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 165 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 165 ~i~~Lv~~L~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
.++..++... .+.+.++-.---|.+.+...+... .+++..++.=.. +.++.++.-|++.+..+....
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a------~~avnt~~kD~~------d~np~iR~lAlrtm~~l~v~~ 117 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA------ILAVNTFLKDCE------DPNPLIRALALRTMGCLRVDK 117 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH------HhhhhhhhccCC------CCCHHHHHHHhhceeeEeehH
Confidence 3455555554 233333334444555555433321 244555554444 568889888888876654322
Q ss_pred chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhc
Q 012813 244 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 323 (456)
Q Consensus 244 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 323 (456)
+.+ .....|.+.++++++.+|..++..+.++ .+.+.......|.++.|-+++.+.++.+..+|+.+|..+.
T Consensus 118 -----i~e--y~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 118 -----ITE--YLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIH 188 (734)
T ss_pred -----HHH--HHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 222 2455688999999999999988666655 3455677778999999999999889999999999999998
Q ss_pred cCchhhHH-HHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHH
Q 012813 324 ITHENKAR-AVRDGGVSVILKKIMDGVHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL 400 (456)
Q Consensus 324 ~~~~~~~~-~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L 400 (456)
..+.+... -...-.+..++..+... ..-.-+.+|..++.. ++.+++. ..+..+...+++.. +.+.-.++.++
T Consensus 189 e~~~~~~~~~l~~~~~~~lL~al~ec-~EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n-~avvlsavKv~ 263 (734)
T KOG1061|consen 189 ESHPSVNLLELNPQLINKLLEALNEC-TEWGQIFILDCLAEYVPKDSREAE---DICERLTPRLQHAN-SAVVLSAVKVI 263 (734)
T ss_pred HhCCCCCcccccHHHHHHHHHHHHHh-hhhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhhccCC-cceEeehHHHH
Confidence 76654111 11111223333333221 111234445555542 1112211 12344555566553 55666677777
Q ss_pred HHHhccChhhHHHHHHhhccHHHHHHHhhcCC
Q 012813 401 HTICLSDRTKWKAMREEESTHGTISKLAQDGT 432 (456)
Q Consensus 401 ~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~ 432 (456)
..+...... ....+. ....++|+.++.+..
T Consensus 264 l~~~~~~~~-~~~~~~-~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 264 LQLVKYLKQ-VNELLF-KKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHHHHH-HHHHHH-HHhcccceeeecccc
Confidence 766665543 222222 245556666555544
No 186
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.88 E-value=0.67 Score=49.93 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=76.4
Q ss_pred CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHh
Q 012813 223 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID 302 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~ 302 (456)
+.++.+|..|++++..+-. ..+.+ .+++.+.+++.++++.+|+.|+-++.++=..+ +..+.+.|.+..+..
T Consensus 103 d~N~~iR~~AlR~ls~l~~-----~el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~ 173 (757)
T COG5096 103 DPNEEIRGFALRTLSLLRV-----KELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKE 173 (757)
T ss_pred CCCHHHHHHHHHHHHhcCh-----HHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHH
Confidence 6789999999999876532 22332 36888999999999999999999999886433 345567789999999
Q ss_pred ccccCChhHHHHHHHHHHHhccC
Q 012813 303 LLDEGHQSAMKDVASAIFNLCIT 325 (456)
Q Consensus 303 lL~~~~~~~~~~a~~aL~~L~~~ 325 (456)
++.+.++.+..+|+.+|..+...
T Consensus 174 l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 174 LVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HhhCCCchHHHHHHHHHHHhchh
Confidence 99999999999999999988655
No 187
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.87 E-value=1.1 Score=48.22 Aligned_cols=162 Identities=17% Similarity=0.180 Sum_probs=109.1
Q ss_pred CchhHHHHHHHHH-HHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCC
Q 012813 176 TLPDQTEAAKELR-LLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM 254 (456)
Q Consensus 176 ~~~~~~~a~~~L~-~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~ 254 (456)
+...+.+|++.+. .++.+ +..-. ..+-++.... +.|.+++.-..--|.+.+...+....+
T Consensus 32 n~~~kidAmK~iIa~M~~G-~dmss-------Lf~dViK~~~------trd~ElKrL~ylYl~~yak~~P~~~lL----- 92 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLG-EDMSS-------LFPDVIKNVA------TRDVELKRLLYLYLERYAKLKPELALL----- 92 (757)
T ss_pred ChHHHHHHHHHHHHHHhcC-CChHH-------HHHHHHHHHH------hcCHHHHHHHHHHHHHHhccCHHHHHH-----
Confidence 3455667777543 33332 22222 2222344443 457777777777777777666532222
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHh
Q 012813 255 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR 334 (456)
Q Consensus 255 ~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~ 334 (456)
+++.+.+=++++|+.+|..|.+++..|-.. . .-.-+++.+.+++.++++.+++.|+-++..+-..+ +....+
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~~----e--l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~ 164 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRVK----E--LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHE 164 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcChH----H--HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence 466677888899999999998887765321 1 11236889999999999999999999999986433 444557
Q ss_pred cCcHHHHHHHHcC--CchHHHHHHHHHHhhCC
Q 012813 335 DGGVSVILKKIMD--GVHVDELLAILAMLSTN 364 (456)
Q Consensus 335 ~g~v~~Lv~lL~~--~~~~~~a~~~L~~L~~~ 364 (456)
.|.+..+..++.+ +.+...|+.+|..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7889999999975 47788888888887654
No 188
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.85 E-value=3.3 Score=44.39 Aligned_cols=248 Identities=12% Similarity=0.068 Sum_probs=129.4
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCH
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 256 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i 256 (456)
.-++--|+.+|.+++.. +-.| +..|-+.++|+ ..++-++.+|+.+...+-....+-..+ ++
T Consensus 121 q~vVglAL~alg~i~s~-Emar-------dlapeVe~Ll~------~~~~~irKKA~Lca~r~irK~P~l~e~-----f~ 181 (866)
T KOG1062|consen 121 QYVVGLALCALGNICSP-EMAR-------DLAPEVERLLQ------HRDPYIRKKAALCAVRFIRKVPDLVEH-----FV 181 (866)
T ss_pred eeehHHHHHHhhccCCH-HHhH-------HhhHHHHHHHh------CCCHHHHHHHHHHHHHHHHcCchHHHH-----hh
Confidence 34456677777777762 2222 33444556666 447788888877776664433322111 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccC-Cccchhhcc-----------------------cCcc--------HHHHhcc
Q 012813 257 PLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGK-----------------------SGAL--------KPLIDLL 304 (456)
Q Consensus 257 ~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~-~~~~~~i~~-----------------------~G~i--------~~Lv~lL 304 (456)
+....+|.+.+..+...+...+..+|.. +++-..+-+ +|+- -.++.+|
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL 261 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL 261 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence 2233344444444444444444444332 111111111 1111 1223344
Q ss_pred ccCChhHHHHHHHHHHHhccCch---hhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHH-HHHH--------H
Q 012813 305 DEGHQSAMKDVASAIFNLCITHE---NKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRA-VEEI--------G 372 (456)
Q Consensus 305 ~~~~~~~~~~a~~aL~~L~~~~~---~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~-~~~i--------~ 372 (456)
-.++++..+.....|..++...+ |....+=..+|..++.+..++.+++.|+.+|.....++++ .+.+ +
T Consensus 262 Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V 341 (866)
T KOG1062|consen 262 GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVV 341 (866)
T ss_pred cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhh
Confidence 45566666666666666666543 3333333346777777777778888888888877765431 1111 1
Q ss_pred --hhCcH----HHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHH-HHHHHHH
Q 012813 373 --DLGGV----SCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRK-ATGILER 445 (456)
Q Consensus 373 --~~g~i----~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~-A~~~L~~ 445 (456)
+..++ ..+++.|+.. +...|..|..++..|...+. .+.++ ..|+..+.+.++..|.. |..+...
T Consensus 342 ~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~~N--v~~mv------~eLl~fL~~~d~~~k~~~as~I~~l 412 (866)
T KOG1062|consen 342 QQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNESN--VRVMV------KELLEFLESSDEDFKADIASKIAEL 412 (866)
T ss_pred cCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcccc--HHHHH------HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11122 2466777755 47889999999988887542 33444 44666666666665543 4444444
Q ss_pred Hhcchhc
Q 012813 446 LKRTVNL 452 (456)
Q Consensus 446 l~~~~~~ 452 (456)
--+|++.
T Consensus 413 aEkfaP~ 419 (866)
T KOG1062|consen 413 AEKFAPD 419 (866)
T ss_pred HHhcCCc
Confidence 4455443
No 189
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=93.74 E-value=0.18 Score=40.26 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc-hhHHHh
Q 012813 180 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVA 250 (456)
Q Consensus 180 ~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~ 250 (456)
+...+..|.+++-.+..++..+.+ .|+++.+++...-- ..+|-.++.|+.+|+||..+.. |+..+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD----~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNID----DHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCC----cccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 456788899999999999999999 89999999887532 5589999999999999988775 554444
No 190
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.73 E-value=0.8 Score=46.88 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=103.7
Q ss_pred ccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCch------HHHHHHHHHHhhCCHHHHH
Q 012813 296 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVH------VDELLAILAMLSTNHRAVE 369 (456)
Q Consensus 296 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~------~~~a~~~L~~L~~~~~~~~ 369 (456)
....+..++.+++...+..|+.-|..|+.+..-...+++..++..|..++.+++. ...++.++..+-.+.-.-=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4566778888888888888999999999999999999999999999999998732 2233444433332211000
Q ss_pred HHHhhCcHHHHHHHhhh-cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 370 EIGDLGGVSCMLRIIRE-STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 370 ~i~~~g~i~~Lv~ll~~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
..+...+|.....++.- .-+..+-..|+..|.++...+... ...+.++--++.|+..++.++.+++.+|..++..+
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~-~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTL-RQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHH-HHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 00111233333333321 112456778999999999888754 34555668899999999999999999988888755
No 191
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.045 Score=50.65 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=40.7
Q ss_pred CCCccccccchhhccCcccC-CCCccccHHHHHHHHhc-CCCCCCCCccccc
Q 012813 72 CPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKA-GNRTCPRTQQVLS 121 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l-~~g~~~~r~~I~~~~~~-~~~~~P~~~~~l~ 121 (456)
-...-+||+|++.-..|.++ +|||.||--||..-+.. ...+||.|+++..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34467899999999999765 59999999999887763 2579999998754
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.64 E-value=0.026 Score=55.66 Aligned_cols=42 Identities=21% Similarity=0.578 Sum_probs=35.6
Q ss_pred ccccchhhccCcc----cCCCCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 77 KCPLSKELMRDPV----ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 77 ~Cpi~~~~m~dPv----~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
+||+|.+-|.+-| ++.|.|+|--+|+++|+.. +||+||--.+
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 8999999998876 4569999999999999875 6899886555
No 193
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=2.6 Score=44.63 Aligned_cols=205 Identities=13% Similarity=0.100 Sum_probs=110.5
Q ss_pred hhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CCccc
Q 012813 210 QLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNK 288 (456)
Q Consensus 210 ~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~-~~~~~ 288 (456)
-++.+|+ +..+=++..|+.+|..+...=+ ..+ . ..+|.|+.-|+++++.++.+|+.+++.|+. ++.|-
T Consensus 148 Dv~tLL~------sskpYvRKkAIl~lykvFLkYP--eAl-r--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 148 DVFTLLN------SSKPYVRKKAILLLYKVFLKYP--EAL-R--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHh------cCchHHHHHHHHHHHHHHHhhh--HhH-h--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 3566666 4567788888888877542111 111 1 267889999999999999999999999997 34444
Q ss_pred hhhcccCccHHHHhccccC-ChhHHHHHHHHHHHhccCch-hhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHH--Hh
Q 012813 289 EVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG---VHVDELLAILA--ML 361 (456)
Q Consensus 289 ~~i~~~G~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~-~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~--~L 361 (456)
..+ -|.+.++|... +-=+.-..+....+|+.... -.. ..+++|.+++.+. .+...|+.++. ++
T Consensus 217 L~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 217 LQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred ccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 333 36777777543 33455556666777765443 111 2566777766543 22222222211 11
Q ss_pred hCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHH
Q 012813 362 STN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKAT 440 (456)
Q Consensus 362 ~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~ 440 (456)
..+ ++.-..+ + -+++.|-.++..+ ++.++--++-++.-+..-.+...+ ..-..+++.+.+.++.+|-+|.
T Consensus 287 s~g~~d~~asi-q-LCvqKLr~fieds-DqNLKYlgLlam~KI~ktHp~~Vq------a~kdlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 287 SSGMSDHSASI-Q-LCVQKLRIFIEDS-DQNLKYLGLLAMSKILKTHPKAVQ------AHKDLILRCLDDKDESIRLRAL 357 (877)
T ss_pred ccCCCCcHHHH-H-HHHHHHhhhhhcC-CccHHHHHHHHHHHHhhhCHHHHH------HhHHHHHHHhccCCchhHHHHH
Confidence 111 1111111 0 0244444444433 355666566666555554442211 1123445555555555555555
Q ss_pred HHHH
Q 012813 441 GILE 444 (456)
Q Consensus 441 ~~L~ 444 (456)
.+|.
T Consensus 358 dLl~ 361 (877)
T KOG1059|consen 358 DLLY 361 (877)
T ss_pred HHHH
Confidence 5554
No 194
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.57 E-value=5.6 Score=43.68 Aligned_cols=241 Identities=17% Similarity=0.144 Sum_probs=130.5
Q ss_pred hhhhhHHHHHHHhcCC-----c-hhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhcccccccc--CCCChhhHHHH
Q 012813 161 ADRDHFLSLLKKMSAT-----L-PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCE--NGINPNLQEDV 232 (456)
Q Consensus 161 ~~~~~i~~Lv~~L~~~-----~-~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~--~~~~~~~~~~a 232 (456)
.+.+++..++..+.+. . ......++.|+..++ -..||+.+.+ .|+++.|++.|...... +....++.+..
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~-~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLE-LNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHH-cCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 4567888888888532 1 222334455555555 6899999999 99999999988533210 01125666666
Q ss_pred HHHHHccccCcch--h---HHHhc-------CCCCHHHHHHHHhcC----CHHHHHHHHHHHHHhccCCccch-hhcccC
Q 012813 233 ITTLLNLSIHDNN--K---KLVAE-------TPMVIPLLMDALRSG----TIETRSNAAAALFTLSALDSNKE-VIGKSG 295 (456)
Q Consensus 233 ~~~L~~Ls~~~~~--~---~~i~~-------~~~~i~~Lv~lL~~~----~~~~~~~aa~aL~~Ls~~~~~~~-~i~~~G 295 (456)
+.++..+...... . ..... ...-+..|++.+.+. ++.+....+++|-.|+..++.+. .+++.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 6666555322211 0 00000 112355566666544 57788888889999987654322 22221
Q ss_pred ccHHHHhcc--c---cCChhHH-HHHHHHHHHhccCc---hhhHHHHhcCcHHHHHHHHcCC------------------
Q 012813 296 ALKPLIDLL--D---EGHQSAM-KDVASAIFNLCITH---ENKARAVRDGGVSVILKKIMDG------------------ 348 (456)
Q Consensus 296 ~i~~Lv~lL--~---~~~~~~~-~~a~~aL~~L~~~~---~~~~~~v~~g~v~~Lv~lL~~~------------------ 348 (456)
+...++.= + .++.... +.-+.+..++-.+. .-|..+++.|++...++.|...
T Consensus 271 -F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 271 -FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred -HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 11111110 0 0111122 22222333332222 3577788999999999988531
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhc
Q 012813 349 VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 405 (456)
Q Consensus 349 ~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 405 (456)
.....++.+|.-||.+...-+.++..++++.+-.+=+.++...+=.-|=.+|-.|+.
T Consensus 350 psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 234558888999998755444556666774444443333223333344444444544
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.51 E-value=3.3 Score=45.81 Aligned_cols=158 Identities=16% Similarity=0.069 Sum_probs=113.0
Q ss_pred hhhHHHHHHHhcCCchhHHHHHHHHH--HHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 163 RDHFLSLLKKMSATLPDQTEAAKELR--LLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 163 ~~~i~~Lv~~L~~~~~~~~~a~~~L~--~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
-|.+|..+++|+++..+.+..+--|. -|+- ++.++.-++. .++-..+++.|..+. .-+++-+.-|+-+|..+.
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv-D~SCQ~dLvK-e~g~~YF~~vL~~~~---~~~~EqrtmaAFVLAviv 585 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAV-DPSCQADLVK-ENGYKYFLQVLDPSQ---AIPPEQRTMAAFVLAVIV 585 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhc-CchhHHHHHh-ccCceeEEEEecCcC---CCCHHHHHHHHHHHHHHH
Confidence 46778889999877544444443332 3444 5777777777 677788888887522 234566777777787776
Q ss_pred cCcchhHHHhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccC-CccchhhcccCccHHHHhccccCChhHHHHHHHH
Q 012813 241 IHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 318 (456)
Q Consensus 241 ~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~a 318 (456)
.+-.-.+.-.-.++.+...+..|.++ .+=.|.=.+-.|..|-.+ ++++..=.+.++.+.|+.+|++.-++++..|.-|
T Consensus 586 ~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFA 665 (1387)
T KOG1517|consen 586 RNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFA 665 (1387)
T ss_pred cccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHH
Confidence 66543333333456788778888886 466777777788888775 4556665678999999999999999999999999
Q ss_pred HHHhccC
Q 012813 319 IFNLCIT 325 (456)
Q Consensus 319 L~~L~~~ 325 (456)
|..+..+
T Consensus 666 Lgtfl~~ 672 (1387)
T KOG1517|consen 666 LGTFLSN 672 (1387)
T ss_pred HHHHhcc
Confidence 9998774
No 196
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.31 E-value=6.3 Score=38.80 Aligned_cols=193 Identities=11% Similarity=0.059 Sum_probs=133.4
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccch-----hhcccCccHHHHhcccc-CChhHHHHHHHHHHHhccCc
Q 012813 254 MVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKE-----VIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITH 326 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~-----~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~ 326 (456)
+.+..|+..|..-+.++|+.++....++.... +++. .+... .-..|..|+.. ++++..-.+-..|+..+..+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 47888899998999999999999888887643 2322 22221 12222233332 25667777788888888887
Q ss_pred hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHh-hCCHHHHHHHHhhC---cHHHHHHHhhhcCChhHHHHHHHHH
Q 012813 327 ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAML-STNHRAVEEIGDLG---GVSCMLRIIRESTCDRNKENCIAIL 400 (456)
Q Consensus 327 ~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L-~~~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~A~~~L 400 (456)
.....+.....+-.+.+.+..+ ++...|..++..+ ..++.....+...+ .+.....+|.++ +-.++++++.+|
T Consensus 155 ~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL 233 (335)
T PF08569_consen 155 SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLL 233 (335)
T ss_dssp HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHH
Confidence 7777777888888899988876 6778888888885 55777777776664 466777888865 488999999999
Q ss_pred HHHhccChhh--HHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 401 HTICLSDRTK--WKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 401 ~~l~~~~~~~--~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
..|-....+. ....+....-+..++.|+++.+..++-.|=-+.+-+-.
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 9987654321 22344455667788888999988899999888876643
No 197
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.20 E-value=1.4 Score=47.14 Aligned_cols=195 Identities=11% Similarity=0.033 Sum_probs=133.3
Q ss_pred hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHH-hccCCccchhhcccCccHHHHhccccCCh-hHHHHHHHHHHHh
Q 012813 245 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFT-LSALDSNKEVIGKSGALKPLIDLLDEGHQ-SAMKDVASAIFNL 322 (456)
Q Consensus 245 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~-Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~-~~~~~a~~aL~~L 322 (456)
.+...+.. |+..+|+++...+.++.+.....+|.. +..... + ....++.+...+..... --.-.++.++.||
T Consensus 496 ~~~~~Ik~-~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 496 ERAKKIKP-GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred hcCccccc-cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 34444443 578888888888888888888777772 221111 1 12456666666655432 2245689999999
Q ss_pred ccCc-hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHH-hh-CcHHHHHHHhhhcCChhHHHHHH
Q 012813 323 CITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIG-DL-GGVSCMLRIIRESTCDRNKENCI 397 (456)
Q Consensus 323 ~~~~-~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~-~~-g~i~~Lv~ll~~~~~~~~~~~A~ 397 (456)
++.. ..|.+++..-+++.+-.++.+. ..+..++..+.||..++..-+..+ +. ...+.....+... .++....++
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a 648 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA 648 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence 8765 4677888776666655555543 568889999999999988665554 42 3566666666553 477888888
Q ss_pred HHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 398 AILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 398 ~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
+++..|+....+++..+..-..+...+..+++++++.+|.....+..|+
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~ 697 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL 697 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH
Confidence 8888788777776665555567888899999999988887776665553
No 198
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.058 Score=52.20 Aligned_cols=53 Identities=34% Similarity=0.409 Sum_probs=47.3
Q ss_pred ccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCccc
Q 012813 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 128 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 128 (456)
...|.+++..+.|||-.+.|..||-..|--|+.. +.+-|.+++++...+|++-
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL 92 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKL 92 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceee
Confidence 3468899999999999999999999999999997 6788999999988888753
No 199
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.12 E-value=0.4 Score=39.29 Aligned_cols=71 Identities=7% Similarity=0.052 Sum_probs=57.7
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
.+..|+++|..+.++.+..-|+.=|..++.+-|. .+.++...|+-..++.|+.+.++.+|..|..+++.+-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5888999996554577777888889999998876 4678888899999999999999999999999998664
No 200
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.07 E-value=6.3 Score=42.37 Aligned_cols=204 Identities=16% Similarity=0.130 Sum_probs=125.2
Q ss_pred HHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcch
Q 012813 167 LSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN 245 (456)
Q Consensus 167 ~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~ 245 (456)
..|.++|.++ ...+.+|++.|..+-...... ....|.+|.... +.+.+++.-..--|...+...++
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv-------S~~Fp~VVKNVa------skn~EVKkLVyvYLlrYAEeqpd 104 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV-------SLLFPAVVKNVA------SKNIEVKKLVYVYLLRYAEEQPD 104 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHhh------ccCHHHHHHHHHHHHHHhhcCCC
Confidence 4678888554 567889999876655533333 235556777766 56889888888777776666553
Q ss_pred hHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccC
Q 012813 246 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT 325 (456)
Q Consensus 246 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 325 (456)
-..+ .|..+-+-|+++|+.+|..|.++|..+- ..++..=++-++-+...+.++-+++.|+-||-.|-.-
T Consensus 105 LALL-----SIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 105 LALL-----SINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred ceee-----eHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 3322 3556777889999999988888777652 2333222333444556667899999999999988665
Q ss_pred ch-hhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHH
Q 012813 326 HE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 402 (456)
Q Consensus 326 ~~-~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 402 (456)
+. .+.+ .+..+=.+|.+. -+.-.|+.+...+|-+ .-+.+. +-...|..++..- ++..|-..+..|..
T Consensus 174 d~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLIH--knyrklC~ll~dv-deWgQvvlI~mL~R 243 (968)
T KOG1060|consen 174 DPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLIH--KNYRKLCRLLPDV-DEWGQVVLINMLTR 243 (968)
T ss_pred ChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHhh--HHHHHHHhhccch-hhhhHHHHHHHHHH
Confidence 43 3333 334445556654 5677788888887753 222221 1234455554432 24455555555544
Q ss_pred Hh
Q 012813 403 IC 404 (456)
Q Consensus 403 l~ 404 (456)
-|
T Consensus 244 YA 245 (968)
T KOG1060|consen 244 YA 245 (968)
T ss_pred HH
Confidence 44
No 201
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.80 E-value=0.66 Score=34.55 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhcc
Q 012813 351 VDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEEST 420 (456)
Q Consensus 351 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~ 420 (456)
...|++++.++++.+.+...+.+.+.++.++++......-.+|--|..+|..++..... .+++.+.|+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G--~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEG--AEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHH--HHHHHHcCC
Confidence 35689999999999999988888899999999999766677899999999998886543 366655554
No 202
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.70 E-value=0.18 Score=30.66 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 012813 256 IPLLMDALRSGTIETRSNAAAALFTLSA 283 (456)
Q Consensus 256 i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~ 283 (456)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999998864
No 203
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.64 E-value=0.36 Score=44.41 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHhhC-------cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccH
Q 012813 349 VHVDELLAILAMLSTNHRAVEEIGDLG-------GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTH 421 (456)
Q Consensus 349 ~~~~~a~~~L~~L~~~~~~~~~i~~~g-------~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~ 421 (456)
..+..|+.+|+.||-.+.+..-+...+ .+..|+.++....++..+|.|+.+|.+||..+...++.+..+.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 457889999999998777776665554 2445566665555688999999999999999987777777778899
Q ss_pred HHHHHHhhcCCHH
Q 012813 422 GTISKLAQDGTAR 434 (456)
Q Consensus 422 ~~L~~Ll~~~~~~ 434 (456)
+.|+..+..+...
T Consensus 219 ~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 219 SHLIAFIEDAEQN 231 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988766443
No 204
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=6.4 Score=42.28 Aligned_cols=245 Identities=17% Similarity=0.162 Sum_probs=131.9
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcch---------hH
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN---------KK 247 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~---------~~ 247 (456)
.-+..+|+..+..+...+. | .+. -++..|-.+++ +.....+-.|+++|..++..... -.
T Consensus 259 emV~~EaArai~~l~~~~~--r-~l~---pavs~Lq~fls------sp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~ 326 (865)
T KOG1078|consen 259 EMVIYEAARAIVSLPNTNS--R-ELA---PAVSVLQLFLS------SPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES 326 (865)
T ss_pred HHHHHHHHHHHhhccccCH--h-hcc---hHHHHHHHHhc------CcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence 4456677777777665322 2 111 25556666666 45678889999999988654331 11
Q ss_pred HHhcCCC--CHHHHHHHHhcCCHHHHHHHHHHHHHhcc--CCccchhhcc-------------cCccHHHHhcccc-CCh
Q 012813 248 LVAETPM--VIPLLMDALRSGTIETRSNAAAALFTLSA--LDSNKEVIGK-------------SGALKPLIDLLDE-GHQ 309 (456)
Q Consensus 248 ~i~~~~~--~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~--~~~~~~~i~~-------------~G~i~~Lv~lL~~-~~~ 309 (456)
.+-..+. .-+++..+|+.|+..........+.+... .++++..+++ .+.+..|.++|+. +.-
T Consensus 327 lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~ 406 (865)
T KOG1078|consen 327 LITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGF 406 (865)
T ss_pred hhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCc
Confidence 2222222 23456778888876555554444444432 3455554443 2444455555543 223
Q ss_pred hHHHHHHHHHHHhcc-CchhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhc
Q 012813 310 SAMKDVASAIFNLCI-THENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES 387 (456)
Q Consensus 310 ~~~~~a~~aL~~L~~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~ 387 (456)
+-+.....++..+.. .++.|. -++..|...+.+......+..+|..|... |.. ..-...+..+...+.-.
T Consensus 407 e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a---~~Pskyir~iyNRviLE 478 (865)
T KOG1078|consen 407 EFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKA---PNPSKYIRFIYNRVILE 478 (865)
T ss_pred hHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccchHHHHHHHHHHhccCCCC---CCcchhhHHHhhhhhhh
Confidence 334444444443333 222222 24555666666666666666666666442 100 00011233333222112
Q ss_pred CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 388 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 388 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
+..++..|+.+|..+....+... ..+.-.|.+.+.+.++.+++.|...|+++..
T Consensus 479 -n~ivRaaAv~alaKfg~~~~~l~------~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 479 -NAIVRAAAVSALAKFGAQDVVLL------PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred -hhhhHHHHHHHHHHHhcCCCCcc------ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 37788899999999886554321 1233445556677788899999999999873
No 205
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.51 E-value=2.6 Score=42.01 Aligned_cols=234 Identities=17% Similarity=0.160 Sum_probs=126.2
Q ss_pred hhhHHHHHHHhcC--CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHH-HHHHHcc
Q 012813 163 RDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDV-ITTLLNL 239 (456)
Q Consensus 163 ~~~i~~Lv~~L~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a-~~~L~~L 239 (456)
.+-+..++..+.+ +...|+.++-.|..-+. ++..|..+.. .|.+..++..+.... .++ ...-+ +.++.-+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra-~g~~~~l~~~l~~~~----~d~-~~~l~~a~i~~~l 92 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRA-HGLVKRLFKALSDAP----DDD-ILALATAAILYVL 92 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHH-cCcHHHHHHHhcccc----chH-HHHHHHHHHHHHH
Confidence 3456777887762 35678888888888887 6899999999 899999999996432 232 33333 3344444
Q ss_pred ccCcchhHHHhcCCCCHHHHHHHHh--cC---CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccc---------
Q 012813 240 SIHDNNKKLVAETPMVIPLLMDALR--SG---TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD--------- 305 (456)
Q Consensus 240 s~~~~~~~~i~~~~~~i~~Lv~lL~--~~---~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~--------- 305 (456)
+.+..+...+ ...+....++.++. .. .......-.. ++ .++. .+.+..+.+++.
T Consensus 93 ~~d~~~~~l~-~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~---~l-------sk~~-~~~~~~~~~~~~~~~~~~~~~ 160 (361)
T PF07814_consen 93 SRDGLNMHLL-LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKK---NL-------SKVQ-QKSRSLCKELLSSGSSWKSPK 160 (361)
T ss_pred ccCCcchhhh-hchhHHHHHHHHhccccccccccchhhhhhh---hh-------hHHH-HHHHHHHHHHHhccccccccC
Confidence 5444443333 33346666677776 11 0000000000 00 0000 001111111110
Q ss_pred cCChhHHHHHHHHHHHhcc---------------CchhhHHHHhcCcHHHHHHHHcC----C--------------chHH
Q 012813 306 EGHQSAMKDVASAIFNLCI---------------THENKARAVRDGGVSVILKKIMD----G--------------VHVD 352 (456)
Q Consensus 306 ~~~~~~~~~a~~aL~~L~~---------------~~~~~~~~v~~g~v~~Lv~lL~~----~--------------~~~~ 352 (456)
.....-+.-|+.+|..++. .+.-+..+.+.|++..+++.+.+ . ...+
T Consensus 161 ~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 240 (361)
T PF07814_consen 161 PPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLE 240 (361)
T ss_pred CcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHH
Confidence 0112223445555555531 01235556677899999998852 0 2356
Q ss_pred HHHHHHHHhhCC-HHHHHHHHhh--CcHHHHH-HHhhhc--CChhHHHHHHHHHHHHhccChhhHHHHH
Q 012813 353 ELLAILAMLSTN-HRAVEEIGDL--GGVSCML-RIIRES--TCDRNKENCIAILHTICLSDRTKWKAMR 415 (456)
Q Consensus 353 ~a~~~L~~L~~~-~~~~~~i~~~--g~i~~Lv-~ll~~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~ 415 (456)
.++.+|.+.+.. +++....... +.+..+. .+++.- ........+++++.|++.+++..+..+-
T Consensus 241 ~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~ 309 (361)
T PF07814_consen 241 RCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFA 309 (361)
T ss_pred HHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhh
Confidence 688999988864 4555555443 3333333 333321 1133467899999999999976555544
No 206
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.44 E-value=11 Score=38.28 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHccccCcc----hhHHHhcCCCCHHHHHHHHhcCC-------HHHHHHHHHHHHHhccCCccchhhccc
Q 012813 226 PNLQEDVITTLLNLSIHDN----NKKLVAETPMVIPLLMDALRSGT-------IETRSNAAAALFTLSALDSNKEVIGKS 294 (456)
Q Consensus 226 ~~~~~~a~~~L~~Ls~~~~----~~~~i~~~~~~i~~Lv~lL~~~~-------~~~~~~aa~aL~~Ls~~~~~~~~i~~~ 294 (456)
.+-+-.|+-.+..+.++++ +|+.+.+.- ..+.+-++|..++ .-.+..+...|.-.|..++....----
T Consensus 25 D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAV-Gf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v 103 (698)
T KOG2611|consen 25 DEERFAALLLVTKFVKNDDIVALNKKLVFEAV-GFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV 103 (698)
T ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhHHHHh-ccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH
Confidence 3445556666666766665 577777764 3677778886542 234566667777788877654322112
Q ss_pred CccHHHHhccccC-Ch------hHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCC
Q 012813 295 GALKPLIDLLDEG-HQ------SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN 364 (456)
Q Consensus 295 G~i~~Lv~lL~~~-~~------~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~ 364 (456)
..||.|...++.+ ++ .+.+++-.+|+.++..+.+...++..|+++.+-++-.-+ .-..-++.++..+...
T Consensus 104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~ 183 (698)
T KOG2611|consen 104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVSK 183 (698)
T ss_pred HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHh
Confidence 4689999998763 33 488999999999999999999999999999999766543 2233445554444432
Q ss_pred ----HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhcc
Q 012813 365 ----HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 406 (456)
Q Consensus 365 ----~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 406 (456)
++.-..+..- |..+-.=++..+ ...+-..+.+|..+-..
T Consensus 184 ~~cw~e~~~~flal--i~~va~df~~~~-~a~KfElc~lL~~vl~~ 226 (698)
T KOG2611|consen 184 LDCWSETIERFLAL--IAAVARDFAVLH-NALKFELCHLLSAVLSS 226 (698)
T ss_pred cccCcCCHHHHHHH--HHHHHHHHHHhh-hHHHHHHHHHHHHHHhC
Confidence 2222223221 444443344333 55666777887755443
No 207
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.44 E-value=4.1 Score=40.88 Aligned_cols=127 Identities=9% Similarity=0.168 Sum_probs=92.0
Q ss_pred HHhcCCCCHHHHHHHHhcCC---HHHHHHHHHHHHHhccCCcc-chhhcccCccHHHHhccc-cC---ChhHHHHHHHHH
Q 012813 248 LVAETPMVIPLLMDALRSGT---IETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD-EG---HQSAMKDVASAI 319 (456)
Q Consensus 248 ~i~~~~~~i~~Lv~lL~~~~---~~~~~~aa~aL~~Ls~~~~~-~~~i~~~G~i~~Lv~lL~-~~---~~~~~~~a~~aL 319 (456)
.+.+++.....|..++++.. +.+-..|+..+..+..++.. -..+.+.|.++.+++.+. .+ +.++....-.+|
T Consensus 100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l 179 (379)
T PF06025_consen 100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVL 179 (379)
T ss_pred cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 34442445666777787763 67778888888888876654 456678899999999998 43 677888888899
Q ss_pred HHhccCchhhHHHHhcCcHHHHHHHHcCC---------chHHHHHHHHHHhhCC-HHHHHHHHhh
Q 012813 320 FNLCITHENKARAVRDGGVSVILKKIMDG---------VHVDELLAILAMLSTN-HRAVEEIGDL 374 (456)
Q Consensus 320 ~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---------~~~~~a~~~L~~L~~~-~~~~~~i~~~ 374 (456)
..||.+..+...+.+.+.++.+++.+.++ +.....=..+..|.++ |.-|..+.+.
T Consensus 180 ~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ 244 (379)
T PF06025_consen 180 SAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDA 244 (379)
T ss_pred hHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999998765 1222223455666665 5555555443
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.38 E-value=6.2 Score=44.42 Aligned_cols=252 Identities=14% Similarity=0.135 Sum_probs=138.7
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc-----cCcchhHHHhc
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS-----IHDNNKKLVAE 251 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls-----~~~~~~~~i~~ 251 (456)
.+.+.+|+..|..++..... -..+ .-.+|.++.++. +....++..|+.+|..+- ....+...+.+
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d-e~~L---DRVlPY~v~l~~------Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e 506 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD-EVKL---DRVLPYFVHLLM------DSEADVRATALETLTELLALVRDIPPSDANIFPE 506 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch-HHHH---hhhHHHHHHHhc------CchHHHHHHHHHHHHHHHhhccCCCcccchhhHh
Confidence 56788899999998874322 1122 248899999998 556789999988877652 11224444544
Q ss_pred CCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc------------------CCccchhhcc-----------cCccHHHH
Q 012813 252 TPMVIPLLMDALRSG-TIETRSNAAAALFTLSA------------------LDSNKEVIGK-----------SGALKPLI 301 (456)
Q Consensus 252 ~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~------------------~~~~~~~i~~-----------~G~i~~Lv 301 (456)
..+|.|-.++.+. ...+|.+=|..|..|+. ++.|-....+ .++=...+
T Consensus 507 --YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~ 584 (1431)
T KOG1240|consen 507 --YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVS 584 (1431)
T ss_pred --hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHH
Confidence 4889898888874 34445444443333321 1111111111 11112222
Q ss_pred hccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHH-HhhCcHHHH
Q 012813 302 DLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEI-GDLGGVSCM 380 (456)
Q Consensus 302 ~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i-~~~g~i~~L 380 (456)
.+|.+.++-++..-+..|.-||.--. |.+ .+.=.++.|+.+|.+.+..-.++ .+..+..-.-....- ++.+.+|-|
T Consensus 585 sLlsd~~~~Vkr~Lle~i~~LC~FFG-k~k-sND~iLshLiTfLNDkDw~LR~a-FfdsI~gvsi~VG~rs~seyllPLl 661 (1431)
T KOG1240|consen 585 SLLSDSPPIVKRALLESIIPLCVFFG-KEK-SNDVILSHLITFLNDKDWRLRGA-FFDSIVGVSIFVGWRSVSEYLLPLL 661 (1431)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhh-hcc-cccchHHHHHHHhcCccHHHHHH-HHhhccceEEEEeeeeHHHHHHHHH
Confidence 34444455566666666666653210 000 01124677777777664333222 122332110000000 233446666
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 381 LRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 381 v~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
.+-+..+. +.+-..|+.+|.-|+...-=. |..+ -.++..+.-++-..+.=+++.+..++....
T Consensus 662 ~Q~ltD~E-E~Viv~aL~~ls~Lik~~ll~-K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 662 QQGLTDGE-EAVIVSALGSLSILIKLGLLR-KPAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred HHhccCcc-hhhHHHHHHHHHHHHHhcccc-hHHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHH
Confidence 66666554 888999999999999865322 2222 145555666677778778998888876553
No 209
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.24 E-value=1.5 Score=41.26 Aligned_cols=96 Identities=15% Similarity=0.236 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHhccC-chhhHHHHhcCcHHHHHHHHcC---CchHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHh
Q 012813 310 SAMKDVASAIFNLCIT-HENKARAVRDGGVSVILKKIMD---GVHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRII 384 (456)
Q Consensus 310 ~~~~~a~~aL~~L~~~-~~~~~~~v~~g~v~~Lv~lL~~---~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll 384 (456)
.....|+.+|-.+|.- +..|..+.+...+..|+++|.. +.++..++.+|..+.. ++.+...|.+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 3466788999988875 4566667788999999999953 2566667766665544 689999999999999999999
Q ss_pred hhc-CChhHHHHHHHHHHHHhc
Q 012813 385 RES-TCDRNKENCIAILHTICL 405 (456)
Q Consensus 385 ~~~-~~~~~~~~A~~~L~~l~~ 405 (456)
++. .+..++-+++..|+-...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 974 346788888888885543
No 210
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=92.21 E-value=0.11 Score=35.71 Aligned_cols=44 Identities=25% Similarity=0.427 Sum_probs=23.7
Q ss_pred cccccchhhccCcccC-CCCcc--ccHHH-HHHHHhcCCCCCCCCccc
Q 012813 76 FKCPLSKELMRDPVIL-ASGQT--FDRPY-IQRWLKAGNRTCPRTQQV 119 (456)
Q Consensus 76 f~Cpi~~~~m~dPv~l-~~g~~--~~r~~-I~~~~~~~~~~~P~~~~~ 119 (456)
+.||||++.|+-||-- .|.|. ||-.. |+.....+.-.||+|++|
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 6899999999999964 46654 76644 444444444579999875
No 211
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=7.8 Score=41.76 Aligned_cols=90 Identities=19% Similarity=0.118 Sum_probs=57.4
Q ss_pred CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHH
Q 012813 223 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLI 301 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv 301 (456)
+.+.-++.-|+.+|.+++..+- + ..+.|-+.++|++.++-+|+-|+-+...+-... +.-+.+ ++.-.
T Consensus 118 s~nq~vVglAL~alg~i~s~Em-----a--rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~ 185 (866)
T KOG1062|consen 118 SSNQYVVGLALCALGNICSPEM-----A--RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFR 185 (866)
T ss_pred CCCeeehHHHHHHhhccCCHHH-----h--HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHH
Confidence 4566788889999999875542 2 236788889999999999999887777665433 222222 33344
Q ss_pred hccccCChhHHHHHHHHHHHhcc
Q 012813 302 DLLDEGHQSAMKDVASAIFNLCI 324 (456)
Q Consensus 302 ~lL~~~~~~~~~~a~~aL~~L~~ 324 (456)
++|.+.+..+.-.++..+..+|.
T Consensus 186 ~lL~ek~hGVL~~~l~l~~e~c~ 208 (866)
T KOG1062|consen 186 KLLCEKHHGVLIAGLHLITELCK 208 (866)
T ss_pred HHHhhcCCceeeeHHHHHHHHHh
Confidence 44544455555555555555554
No 212
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=92.13 E-value=4.8 Score=44.65 Aligned_cols=199 Identities=17% Similarity=0.101 Sum_probs=121.2
Q ss_pred hHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccC-ChhHHHHHHHHHHHhcc
Q 012813 246 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCI 324 (456)
Q Consensus 246 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~ 324 (456)
...+++ .++..|...|++++..+|..||.-+..+..-.+ ..+ ...+|...++++... ++.....|+-+|+.|+.
T Consensus 335 v~eivE--~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 335 VPEIVE--FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred cHHHHH--HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 445554 367778888888899999999999998886443 111 123556666655543 46788899999999987
Q ss_pred CchhhHHHHhcCcHHHHHHHHcC---------C-chHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHH-HHhhhcCChh
Q 012813 325 THENKARAVRDGGVSVILKKIMD---------G-VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCML-RIIRESTCDR 391 (456)
Q Consensus 325 ~~~~~~~~v~~g~v~~Lv~lL~~---------~-~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv-~ll~~~~~~~ 391 (456)
..=.....+. .++|.+++.|.- + .+++.|+.+.|.++.. +..-+-+.+. ....|+ ..+. +..-.
T Consensus 410 rGlLlps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlF-Drevn 486 (1133)
T KOG1943|consen 410 RGLLLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALF-DREVN 486 (1133)
T ss_pred cCCcchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhc-Cchhh
Confidence 6532222221 367777777641 1 6899999999999874 3322223222 122232 3333 22356
Q ss_pred HHHHHHHHHHHHhccChh-------------------------hHHHHHHhhccHHHHHH-Hh----hcCCHHHHHHHHH
Q 012813 392 NKENCIAILHTICLSDRT-------------------------KWKAMREEESTHGTISK-LA----QDGTARAKRKATG 441 (456)
Q Consensus 392 ~~~~A~~~L~~l~~~~~~-------------------------~~~~~~~~~g~~~~L~~-Ll----~~~~~~~k~~A~~ 441 (456)
.|+.|.+++.....+.++ -+..+.+-.|...++.. |+ .+.++.+++.|++
T Consensus 487 cRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAY 566 (1133)
T ss_pred HhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 677777777755433111 01112222333333333 33 4458899999999
Q ss_pred HHHHHhcchhc
Q 012813 442 ILERLKRTVNL 452 (456)
Q Consensus 442 ~L~~l~~~~~~ 452 (456)
.|..|+...+.
T Consensus 567 aL~~Ls~~~pk 577 (1133)
T KOG1943|consen 567 ALHKLSLTEPK 577 (1133)
T ss_pred HHHHHHHhhHH
Confidence 99999876554
No 213
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.02 E-value=2.2 Score=45.43 Aligned_cols=70 Identities=19% Similarity=0.100 Sum_probs=49.9
Q ss_pred hHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 165 HFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 165 ~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
.+..+.+.+.+ ++.++..|+-.+..+-.. ..+.... .|.++.|-+++. +.++.+..+|+.+|..+...+
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~-~gl~~~L~~ll~------D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVED-SGLVDALKDLLS------DSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcC---Chhhccc-cchhHHHHHHhc------CCCchHHHHHHHHHHHHHHhC
Confidence 34556666654 366677776666665543 3344555 799999999999 668999999999999886555
Q ss_pred c
Q 012813 244 N 244 (456)
Q Consensus 244 ~ 244 (456)
.
T Consensus 192 ~ 192 (734)
T KOG1061|consen 192 P 192 (734)
T ss_pred C
Confidence 4
No 214
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.042 Score=50.53 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=40.1
Q ss_pred ccccccchhhccCcc----------cCCCCccccHHHHHHHHhcC-CCCCCCCcccccCCC
Q 012813 75 EFKCPLSKELMRDPV----------ILASGQTFDRPYIQRWLKAG-NRTCPRTQQVLSHTI 124 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv----------~l~~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~~~~ 124 (456)
+-.|-+|++-+.+-| .++|+|.|---||.-|+.-| .++||.|.+..+...
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 568999998776655 68999999999999999744 579999987665433
No 215
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.54 E-value=0.092 Score=36.28 Aligned_cols=46 Identities=11% Similarity=0.103 Sum_probs=32.7
Q ss_pred cccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCC
Q 012813 76 FKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTI 124 (456)
Q Consensus 76 f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~ 124 (456)
..|=.++..=...+++||||.+++.+-.-+ +..-||+|+.|+...+
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 344455555566889999999999984333 3446999999987643
No 216
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.53 E-value=1 Score=48.08 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=98.2
Q ss_pred CCccchhhcccCccHHHHhccccCChhHHHHHHHHHH-HhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHH
Q 012813 284 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF-NLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILA 359 (456)
Q Consensus 284 ~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~-~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~ 359 (456)
...-+...++.|+...|+.+.....+.++..+..+|. .+....+. ...+++++...+... .-.-.++.+|.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 3445677788999999999999888888888888887 22211111 123556666655543 23456899999
Q ss_pred HhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHH
Q 012813 360 MLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRK 438 (456)
Q Consensus 360 ~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~ 438 (456)
||++. ...|+.+.+.-+++.+-.++... .+..|..+...+.||..++--.-+.+++-....+.....+....++....
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 99985 45777788776666655555544 48899999999999988664332233332334444444444444444444
Q ss_pred HHHHH
Q 012813 439 ATGIL 443 (456)
Q Consensus 439 A~~~L 443 (456)
++.++
T Consensus 647 ~a~a~ 651 (748)
T KOG4151|consen 647 GAGAL 651 (748)
T ss_pred ccccc
Confidence 44433
No 217
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.38 E-value=2.4 Score=41.04 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=104.2
Q ss_pred CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCcc--ch-------hhcc
Q 012813 223 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN--KE-------VIGK 293 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~--~~-------~i~~ 293 (456)
+.++.+++.|+..|.-.+.-+. .++.. .++.+...++.++.+++..|+.+|+.+...... -. ....
T Consensus 38 ~~~~~vR~~al~cLGl~~Lld~---~~a~~--~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~ 112 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCLLDK---ELAKE--HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDS 112 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHhCh---HHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchH
Confidence 5578999999999998877664 22222 477788888888999999999999988753321 11 1223
Q ss_pred cCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC------chHHHHHHHHHHhhCCHHH
Q 012813 294 SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG------VHVDELLAILAMLSTNHRA 367 (456)
Q Consensus 294 ~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~~~~~ 367 (456)
...+..+.+.|.+.+++++..|+..+..|-..+.... ...++..|+-+-.++ .++..-...+-..|.....
T Consensus 113 ~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~ 189 (298)
T PF12719_consen 113 KSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPE 189 (298)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHH
Confidence 4678888888888899999999999998876654322 133555565555554 2333333445555665443
Q ss_pred HHHHHhhCcHHHHHHHhhh
Q 012813 368 VEEIGDLGGVSCMLRIIRE 386 (456)
Q Consensus 368 ~~~i~~~g~i~~Lv~ll~~ 386 (456)
.+.....++++.+-.+...
T Consensus 190 ~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 190 NQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4455555667777777664
No 218
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.29 E-value=0.97 Score=39.30 Aligned_cols=142 Identities=20% Similarity=0.144 Sum_probs=90.7
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCc-hhhHHH
Q 012813 256 IPLLMDALRS--GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARA 332 (456)
Q Consensus 256 i~~Lv~lL~~--~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~ 332 (456)
+..++..|.. .+.++|..+.-++..+- +..+.... .-.-+.+-.++..++.+....+..+|..|-... +-...+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 3445555543 45678888777776662 22222221 112233334444444456777788888776544 455555
Q ss_pred H-hcCcHHHHHHHHc--CC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChh-HHHHHHHHHH
Q 012813 333 V-RDGGVSVILKKIM--DG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR-NKENCIAILH 401 (456)
Q Consensus 333 v-~~g~v~~Lv~lL~--~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-~~~~A~~~L~ 401 (456)
. ..|..+.++.++. .. ..+..++.+|..-|.+...|..+.+.| ++.|-++.+.+.++. ++..|+-.|.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHh
Confidence 4 6799999999998 33 567778888888888888888887774 888999997655455 6666665554
No 219
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.12 E-value=2.9 Score=37.17 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=76.6
Q ss_pred cHHHHHHHHcCCchHHHHHHHHHHhhC-C-HHHHHHHHhhCcHHHHHHHhhhc--------CChhHHHHHHHHHHHHhcc
Q 012813 337 GVSVILKKIMDGVHVDELLAILAMLST-N-HRAVEEIGDLGGVSCMLRIIRES--------TCDRNKENCIAILHTICLS 406 (456)
Q Consensus 337 ~v~~Lv~lL~~~~~~~~a~~~L~~L~~-~-~~~~~~i~~~g~i~~Lv~ll~~~--------~~~~~~~~A~~~L~~l~~~ 406 (456)
....+++.+.+.......+.-|...-. . ..-.+.|++.||+..|+.+|..- ........++.+|..|...
T Consensus 67 ~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~ 146 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT 146 (187)
T ss_dssp HHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc
Confidence 455677777766444344433333333 2 35578888999999999888752 1125667789999998887
Q ss_pred ChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 407 DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 407 ~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
..+ ...++...+.+..|...+.+.+..++..+..+|..+|
T Consensus 147 ~~G-~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 147 KYG-LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHH-HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 654 5678888899999999999999999999999998775
No 220
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=91.09 E-value=0.12 Score=41.11 Aligned_cols=58 Identities=17% Similarity=0.535 Sum_probs=35.3
Q ss_pred cCCCCCC-ccccccchhhccCcccCCCC------ccccHHHHHHHHhcCCCCCCCCcccccCCCCc
Q 012813 68 ETVSCPE-EFKCPLSKELMRDPVILASG------QTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 126 (456)
Q Consensus 68 ~~~~~p~-~f~Cpi~~~~m~dPv~l~~g------~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~ 126 (456)
+.+..|+ +++||||..+-..=|.+.++ .-||..++.+-... +..-|.+|+|++..+++
T Consensus 32 ~~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~-~~~HPLSREpit~sMIv 96 (113)
T PF06416_consen 32 EEFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVRE-GAPHPLSREPITPSMIV 96 (113)
T ss_dssp CCCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHC-T---TTT-----TTTEE
T ss_pred hhccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHc-CCCCCCccCCCChhhEe
Confidence 4555555 57899999998888887642 24899999999887 45679999999887654
No 221
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=90.89 E-value=3.8 Score=38.86 Aligned_cols=174 Identities=17% Similarity=0.164 Sum_probs=107.4
Q ss_pred CChhhHHHHHHHHHccccCcchhHHHhcCCCC-HHHHHHHHhcC----CHHHHHHHHHHHHHhccCCccchhhccc-C-c
Q 012813 224 INPNLQEDVITTLLNLSIHDNNKKLVAETPMV-IPLLMDALRSG----TIETRSNAAAALFTLSALDSNKEVIGKS-G-A 296 (456)
Q Consensus 224 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~-i~~Lv~lL~~~----~~~~~~~aa~aL~~Ls~~~~~~~~i~~~-G-~ 296 (456)
...+.+--++..++-+..+......+...++. ...+..++..+ ++..+.-+++++.|+-.....+..+... + .
T Consensus 75 Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~ 154 (268)
T PF08324_consen 75 WPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSS 154 (268)
T ss_dssp S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTC
T ss_pred CCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccch
Confidence 34566777777777777777665555544322 44455555443 5778888999999998888887777654 3 3
Q ss_pred cHHHHhccccC----ChhHHHHHHHHHHHhccCchhhH--HHHhcCcHHHHHHHHc----CCchHHHHHHHHHHhhCCHH
Q 012813 297 LKPLIDLLDEG----HQSAMKDVASAIFNLCITHENKA--RAVRDGGVSVILKKIM----DGVHVDELLAILAMLSTNHR 366 (456)
Q Consensus 297 i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~~~~~~--~~v~~g~v~~Lv~lL~----~~~~~~~a~~~L~~L~~~~~ 366 (456)
+...+..+... +..++..++.+++|++...-... .-.....+..+++.+. +++....++.+|.+|...+.
T Consensus 155 i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~ 234 (268)
T PF08324_consen 155 ILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSD 234 (268)
T ss_dssp HHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCh
Confidence 44444444443 67888999999999986442211 1112224555666432 23678889999999998776
Q ss_pred HHHHHHhh-CcHHHHHHHhhhcCChhHHHHHH
Q 012813 367 AVEEIGDL-GGVSCMLRIIRESTCDRNKENCI 397 (456)
Q Consensus 367 ~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~A~ 397 (456)
........ |+-..+-.....+..++.++.+.
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 235 SAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 66666553 44444444443444466666553
No 222
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.88 E-value=0.35 Score=39.62 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=54.0
Q ss_pred CHHHHHHHHhc-CCHHHHHHHHHHHHHhccC-CccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhc
Q 012813 255 VIPLLMDALRS-GTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 323 (456)
Q Consensus 255 ~i~~Lv~lL~~-~~~~~~~~aa~aL~~Ls~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 323 (456)
++..|+++|.. .++.+...|+.=|..++.. +..+..+.+.|+-..+..|+.++|++++..|+.++..|-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 56678899943 4667777777778888864 456666767899999999999999999999999987663
No 223
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.52 E-value=8.1 Score=38.05 Aligned_cols=156 Identities=14% Similarity=0.061 Sum_probs=114.6
Q ss_pred hhcccCccHHHHhccccCChhHHHHHHHHHHHhccCch-hhH-----HHHh--cCcHHHHHHHHcCCchHHHHHHHHHHh
Q 012813 290 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKA-----RAVR--DGGVSVILKKIMDGVHVDELLAILAML 361 (456)
Q Consensus 290 ~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~-----~~v~--~g~v~~Lv~lL~~~~~~~~a~~~L~~L 361 (456)
.+...+.+..|+..|..-+-++++.+.....++..... ++. -+.+ ...+..|++.-..++..-.+-.+|..+
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 34456889999999999899999999999999987642 322 1221 134444554445668888888999999
Q ss_pred hCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHh--hccHHHHHHHhhcCCHHHHHHH
Q 012813 362 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREE--ESTHGTISKLAQDGTARAKRKA 439 (456)
Q Consensus 362 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~--~g~~~~L~~Ll~~~~~~~k~~A 439 (456)
+.++...+.+.....+..+.+.++.++ -.+..-|..++..+-..........+.. ..+......|+++++--+|+++
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~~~~-Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQLPN-FDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTTSSS-HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhcCCc-cHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 999988888888888888999998654 7788889999998776666555555532 2355677888999999999999
Q ss_pred HHHHHHH
Q 012813 440 TGILERL 446 (456)
Q Consensus 440 ~~~L~~l 446 (456)
..+|..+
T Consensus 230 lkLL~el 236 (335)
T PF08569_consen 230 LKLLGEL 236 (335)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999865
No 224
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.43 E-value=0.64 Score=48.17 Aligned_cols=154 Identities=15% Similarity=0.181 Sum_probs=99.9
Q ss_pred CccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHH---HhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHH
Q 012813 295 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARA---VRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVE 369 (456)
Q Consensus 295 G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~---v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~ 369 (456)
-+|..++.+|.+..+.++..|+.....|+.--.+|... ...|. .|.+.|... ++.-..+.+++.+.+...-+.
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 35677778888889999999998888776543333222 22232 345555432 444444444444443221110
Q ss_pred H-HHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 370 E-IGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 370 ~-i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
. =--.|.+|.|.-+|++.+ .++..+.+..+..+|.++++.. ...+=+.+---|+.++.+.+..+++.|...+-.+++
T Consensus 682 mqpPi~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi-~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 682 MQPPISGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYI-GVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred cCCchhhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccC-CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 0 012367899999999876 8999999999999999988742 222222344456677888899999999998888877
Q ss_pred chhc
Q 012813 449 TVNL 452 (456)
Q Consensus 449 ~~~~ 452 (456)
.-.+
T Consensus 760 aiGP 763 (975)
T COG5181 760 AIGP 763 (975)
T ss_pred hcCH
Confidence 5443
No 225
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=90.27 E-value=0.13 Score=50.07 Aligned_cols=46 Identities=20% Similarity=0.394 Sum_probs=39.3
Q ss_pred ccccchhhccCcccCCCCccccHHHHHHHHhcC-CCCCCCCcccccC
Q 012813 77 KCPLSKELMRDPVILASGQTFDRPYIQRWLKAG-NRTCPRTQQVLSH 122 (456)
Q Consensus 77 ~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~~ 122 (456)
+|-||.+==+|=-+=||||-.|-.|+..|-.+. ..+|||||-.+..
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 699999988887778999999999999999653 6899999977653
No 226
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.20 E-value=0.19 Score=49.19 Aligned_cols=49 Identities=24% Similarity=0.506 Sum_probs=40.0
Q ss_pred CCccccccchhhccCcc-------cCC-CCccccHHHHHHHHhcC------CCCCCCCccccc
Q 012813 73 PEEFKCPLSKELMRDPV-------ILA-SGQTFDRPYIQRWLKAG------NRTCPRTQQVLS 121 (456)
Q Consensus 73 p~~f~Cpi~~~~m~dPv-------~l~-~g~~~~r~~I~~~~~~~------~~~~P~~~~~l~ 121 (456)
-.+..|-||++.-.+++ ++| |-|.||-.||..|-... ...||+||.+.+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45889999999999988 344 99999999999998432 257999998754
No 227
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.12 E-value=0.64 Score=28.13 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 421 HGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 421 ~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
++.+.+++++.++++|..|...|..+.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999998764
No 228
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=90.03 E-value=0.29 Score=33.00 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=22.5
Q ss_pred cccchhhc--cCcccCC--CCccccHHHHHHHHhcCCCCCCCCcccc
Q 012813 78 CPLSKELM--RDPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQVL 120 (456)
Q Consensus 78 Cpi~~~~m--~dPv~l~--~g~~~~r~~I~~~~~~~~~~~P~~~~~l 120 (456)
||++.+.| +|-.+.| ||..++|-+-.+...+.+..||-+|++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888888 4445677 6888899998888865578899999875
No 229
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.90 E-value=1.3 Score=40.19 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc-hhHHHhcCCCCHHH
Q 012813 180 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL 258 (456)
Q Consensus 180 ~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~~i~~ 258 (456)
...|+..|..++. .++.+..|.+ +..--.|-..|...+. ++.-+-.+-.++.++..|-.+++ ....+.....++|.
T Consensus 117 vcnaL~lLQclaS-hPetk~~Fl~-AhiplflypfLntss~-~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 117 VCNALNLLQCLAS-HPETKKVFLD-AHIPLFLYPFLNTSSS-NSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred HHHHHHHHHHHhc-Ccchheeeee-cccceeeHhhhhcccc-CCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 4567777778887 6889998888 5443334455543221 12234567788899998888775 44444444569999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc----cC----ccHHHH-hccccCChhHHHHHHHHHHHhccCchhh
Q 012813 259 LMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK----SG----ALKPLI-DLLDEGHQSAMKDVASAIFNLCITHENK 329 (456)
Q Consensus 259 Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~----~G----~i~~Lv-~lL~~~~~~~~~~a~~aL~~L~~~~~~~ 329 (456)
++++++.|+.-.+..|+-.+..+-.++..-..+.. -- .+..++ ++++.++-+..+.++++-..||..+..|
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR 273 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHAR 273 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHH
Confidence 99999999887777777666665555544333322 11 111111 1223345556666666666666655544
Q ss_pred HH
Q 012813 330 AR 331 (456)
Q Consensus 330 ~~ 331 (456)
..
T Consensus 274 ~l 275 (315)
T COG5209 274 AL 275 (315)
T ss_pred HH
Confidence 43
No 230
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=89.85 E-value=7.9 Score=37.69 Aligned_cols=202 Identities=16% Similarity=0.172 Sum_probs=100.0
Q ss_pred hhhHHHHHHHHHccccCcchhHHHhc-CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC---CccchhhcccCccHHHH
Q 012813 226 PNLQEDVITTLLNLSIHDNNKKLVAE-TPMVIPLLMDALRSGTIETRSNAAAALFTLSAL---DSNKEVIGKSGALKPLI 301 (456)
Q Consensus 226 ~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~---~~~~~~i~~~G~i~~Lv 301 (456)
...++.++..|.++-...-....+.. ...++..+.+.++.|..+-+..|+.++.-++.. .+....+.+ ...|.|.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~ 135 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHH
Confidence 45555555555554322221111111 112456677888888766666676666655543 233344433 4678888
Q ss_pred hccccCC--hhHHHHHHHHHHHhccCch-hhHHHHh-cCcHHHHHHH--Hc-CC-----------chHHHHHHHHHHhhC
Q 012813 302 DLLDEGH--QSAMKDVASAIFNLCITHE-NKARAVR-DGGVSVILKK--IM-DG-----------VHVDELLAILAMLST 363 (456)
Q Consensus 302 ~lL~~~~--~~~~~~a~~aL~~L~~~~~-~~~~~v~-~g~v~~Lv~l--L~-~~-----------~~~~~a~~~L~~L~~ 363 (456)
+.+.+++ ..++..++.+|.-++.... .-..+.+ ...+..+... +. ++ .+...|+..-.-|..
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt 215 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLT 215 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHh
Confidence 8887653 3454555656665443211 1111110 0122211111 11 11 245555555445544
Q ss_pred C-HHH-HHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHH--HHhhccHHHHHHHhhc
Q 012813 364 N-HRA-VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM--REEESTHGTISKLAQD 430 (456)
Q Consensus 364 ~-~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~--~~~~g~~~~L~~Ll~~ 430 (456)
. +.. .....+ ..++.|+.+|.+. +..+|..|-.+|..|.......-... -....+...|..|...
T Consensus 216 ~~~~~~~~~~~~-~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~d 284 (309)
T PF05004_consen 216 TLPDSKLEDLLE-EALPALSELLDSD-DVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATD 284 (309)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHh
Confidence 2 321 223222 3589999999965 48899988888877754333210011 0122445566666544
No 231
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.84 E-value=2.1 Score=38.08 Aligned_cols=116 Identities=22% Similarity=0.225 Sum_probs=77.3
Q ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHhhcCc-hhhhhhhccCCchhhhhhccccccc---cCCCChhhHHHHHHHHHccc
Q 012813 165 HFLSLLKKMSATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKC---ENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 165 ~i~~Lv~~L~~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~~g~i~~Lv~lL~~~~~---~~~~~~~~~~~a~~~L~~Ls 240 (456)
....+++.+.+..... +.+..|...-+..+ .--..|.+ .||+..|+.+|..... ....+......++..|..+.
T Consensus 67 ~p~~~i~~L~~~~~~~-~~L~~L~v~Lrt~~~~Wv~~Fl~-~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS-KILKSLRVSLRTNPISWVQEFLE-LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH-HHHHHHHHHHHHS-HHHHHHH-H-HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH-HHHHHHHHHhccCCchHHHHhcc-CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3455677775442221 34444443333222 33445666 6999999998864321 11235577888899998888
Q ss_pred cCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 012813 241 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS 282 (456)
Q Consensus 241 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls 282 (456)
.+......+...++++..|+..|.+.+..++..++..|..+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888888888888889999999999999999999999988776
No 232
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=0.27 Score=46.09 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=38.9
Q ss_pred ccccch-hhccCccc----CCCCccccHHHHHHHHhcCCCCCCCCcccccCC
Q 012813 77 KCPLSK-ELMRDPVI----LASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 123 (456)
Q Consensus 77 ~Cpi~~-~~m~dPv~----l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 123 (456)
-||+|+ +...+|.+ -||||+.|-+|.-+-+.-|...||-|+.++...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 489988 56677753 379999999999999998889999999887543
No 233
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.05 E-value=16 Score=32.38 Aligned_cols=91 Identities=21% Similarity=0.110 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc
Q 012813 267 TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM 346 (456)
Q Consensus 267 ~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~ 346 (456)
++.+|.+++.++..|+...++ ++ ...++.+...|.++++.+++.|+.+|.+|...+-.+.+ ...+..++..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence 467899999999999864432 11 23578999999999999999999999999876532221 122377777787
Q ss_pred CC--chHHHHHHHHHHhhCC
Q 012813 347 DG--VHVDELLAILAMLSTN 364 (456)
Q Consensus 347 ~~--~~~~~a~~~L~~L~~~ 364 (456)
++ .++..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 65 6788888888887764
No 234
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=88.54 E-value=0.34 Score=43.84 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=43.9
Q ss_pred ccccccchhhccCcccCC-CCccccHHHHHHHHhc-CCCCCCC--CcccccCCCCcccHHHH
Q 012813 75 EFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKA-GNRTCPR--TQQVLSHTILTPNHLIR 132 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~-~~~~~P~--~~~~l~~~~l~~n~~lk 132 (456)
+.+||||.+..--|.+-. |.|.|+|..|...+.- ....||. |-+....+.+...+.|.
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE 250 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILE 250 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHH
Confidence 368999999999998765 9999999999999973 2345786 65666666666555443
No 235
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=88.50 E-value=22 Score=33.45 Aligned_cols=196 Identities=13% Similarity=0.182 Sum_probs=112.4
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 284 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~ 284 (456)
..+++.|++.|... +..+-++-+|..+|..+- . +...+.+-++.+++-.++++.+..+|..+-..
T Consensus 66 ~~Av~~l~~vl~de----sq~pmvRhEAaealga~~-~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~ 130 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDE----SQEPMVRHEAAEALGAIG-D----------PESLEILTKYIKDPCKEVRETCELAIKRLEWK 130 (289)
T ss_pred chhhHHHHHHhccc----ccchHHHHHHHHHHHhhc-c----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHh
Confidence 56899999998743 346788889999997754 2 23566666776666677888777778776432
Q ss_pred Ccc-----chhhcc--------cCccHHHHhccccCChhH--HHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC-
Q 012813 285 DSN-----KEVIGK--------SGALKPLIDLLDEGHQSA--MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG- 348 (456)
Q Consensus 285 ~~~-----~~~i~~--------~G~i~~Lv~lL~~~~~~~--~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~- 348 (456)
+.. ...... .+-|..|-..|.+.+... +..|+-.|+|+-.. .+|..|++-+..+
T Consensus 131 ~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~S 200 (289)
T KOG0567|consen 131 DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLADDS 200 (289)
T ss_pred hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccch
Confidence 211 111111 112333333333322222 22233333333111 1344455544433
Q ss_pred -chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhc-CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHH
Q 012813 349 -VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES-TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK 426 (456)
Q Consensus 349 -~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ 426 (456)
-.+..+..+|..|- ..-+|+.|.+.|... ..+-+|-.|+.+|..++.. ..+.+|.+
T Consensus 201 alfrhEvAfVfGQl~----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------~~~~vL~e 258 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQ----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------DCVEVLKE 258 (289)
T ss_pred HHHHHHHHHHHhhcc----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------------HHHHHHHH
Confidence 23444555544432 223578888777752 3477888899999887762 23456777
Q ss_pred HhhcCCHHHHHHHHHHHHHHh
Q 012813 427 LAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 427 Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
.+.+..+-+++.+..+|.++-
T Consensus 259 ~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHHH
Confidence 777777778888888887664
No 236
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=88.22 E-value=28 Score=38.56 Aligned_cols=232 Identities=10% Similarity=0.104 Sum_probs=113.1
Q ss_pred chhhhhhccccccccCCCChhhHHHHHHHHHcc-ccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC-
Q 012813 207 AIPQLLSPLSESKCENGINPNLQEDVITTLLNL-SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL- 284 (456)
Q Consensus 207 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L-s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~- 284 (456)
.+|.+...|... +........++..|.++ ..++...-.-... ...|.++....++-..+-..|..+...++..
T Consensus 477 lvpgI~~~l~Dk----Ssss~~ki~~L~fl~~~L~s~~p~~fhp~~~-~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvi 551 (1233)
T KOG1824|consen 477 LVPGIIYSLNDK----SSSSNLKIDALVFLYSALISHPPEVFHPHLS-ALSPPVVAAVGDPFYKISAEALLVCQQLVKVI 551 (1233)
T ss_pred cchhhhhhcCCc----cchHHHHHHHHHHHHHHHhcCChhhcccchh-hhhhHHHHHhcCchHhhhHHHHHHHHHHHHHh
Confidence 445555555533 22345556666665554 3333211100111 1334344444444344544555444444421
Q ss_pred ---Cccchhhcc---cCccHHHHhcccc--CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCchHHHHHH
Q 012813 285 ---DSNKEVIGK---SGALKPLIDLLDE--GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLA 356 (456)
Q Consensus 285 ---~~~~~~i~~---~G~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~ 356 (456)
..+...=+. ...+....+.|.. .|.++++.|..+++.+...-......-=...++.|++-|++.-.+-.|+.
T Consensus 552 rpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~Avk 631 (1233)
T KOG1824|consen 552 RPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVK 631 (1233)
T ss_pred cccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHH
Confidence 111100000 1133344445544 37899999999999876543322222222467888888888877888999
Q ss_pred HHHHhhCCHHH--HHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhH-HHHHHhhccHHHHHHHhhcCCH
Q 012813 357 ILAMLSTNHRA--VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKW-KAMREEESTHGTISKLAQDGTA 433 (456)
Q Consensus 357 ~L~~L~~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~-~~~~~~~g~~~~L~~Ll~~~~~ 433 (456)
+|..++..+-. ...+... +++.|+..++... ...+.....++-.|..+..... ...+ .-++..+..|+...+-
T Consensus 632 Alt~Ia~S~l~i~l~~~l~~-il~~l~~flrK~~-r~lr~~~l~a~~~L~~~~~~~~~~~~~--e~vL~el~~Lisesdl 707 (1233)
T KOG1824|consen 632 ALTLIAMSPLDIDLSPVLTE-ILPELASFLRKNQ-RALRLATLTALDKLVKNYSDSIPAELL--EAVLVELPPLISESDL 707 (1233)
T ss_pred HHHHHHhccceeehhhhHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHH--HHHHHHhhhhhhHHHH
Confidence 99988876422 1222222 4666777776532 3344444444444433221111 1122 1233334444444444
Q ss_pred HHHHHHHHHHHHHh
Q 012813 434 RAKRKATGILERLK 447 (456)
Q Consensus 434 ~~k~~A~~~L~~l~ 447 (456)
.+-+.|..+|..+.
T Consensus 708 hvt~~a~~~L~tl~ 721 (1233)
T KOG1824|consen 708 HVTQLAVAFLTTLA 721 (1233)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666554
No 237
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.98 E-value=22 Score=36.36 Aligned_cols=241 Identities=12% Similarity=0.021 Sum_probs=133.0
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSA 283 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~ 283 (456)
.|.+..++..+....+ +++..++..|+..|.|++..-+.+..-... -.+..++.-|-++ +.++.-.+..+|..+..
T Consensus 253 ~~lL~s~~~~la~ka~--dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKAT--DPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred cccHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 5666555555543333 456688889999999998874322222111 1344455555444 67888888877776654
Q ss_pred CCccchhhc-ccCccHHHHhccccCChhHHHHHHHHHHHhccCchhh--HHHHhc--CcHHHHHHHHcCCch-HHHHHHH
Q 012813 284 LDSNKEVIG-KSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENK--ARAVRD--GGVSVILKKIMDGVH-VDELLAI 357 (456)
Q Consensus 284 ~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~--~~~v~~--g~v~~Lv~lL~~~~~-~~~a~~~ 357 (456)
.-.+..... =..+.-.+..+.++.+++++..|..++..|+.....+ ..+.+. +...+|+-.|.++.. ...|+..
T Consensus 330 ~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~ 409 (533)
T KOG2032|consen 330 KASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRS 409 (533)
T ss_pred hhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHH
Confidence 333322111 1234456677888889999999988888887644333 333331 333445555666643 5567777
Q ss_pred HHHhhCCHHHHHHHH---h---------------h-----C-cHHHHHHHhhh-------cCChhHHHHHHHHHHHHhcc
Q 012813 358 LAMLSTNHRAVEEIG---D---------------L-----G-GVSCMLRIIRE-------STCDRNKENCIAILHTICLS 406 (456)
Q Consensus 358 L~~L~~~~~~~~~i~---~---------------~-----g-~i~~Lv~ll~~-------~~~~~~~~~A~~~L~~l~~~ 406 (456)
....|.-.-++++.. + . . ..+.+..++.. ...+.+++.|+..-.++..+
T Consensus 410 ~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~ 489 (533)
T KOG2032|consen 410 ELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDS 489 (533)
T ss_pred HHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence 777776322222221 1 0 0 01111111111 11245666666555555544
Q ss_pred ChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 407 DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 407 ~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
-.........-.-....+..+.+...+++++.|..+|..+.+
T Consensus 490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 333222222222344566666778888999999999987764
No 238
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.90 E-value=1.4 Score=40.15 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcC----ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHH
Q 012813 350 HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIREST----CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTIS 425 (456)
Q Consensus 350 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~----~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~ 425 (456)
-.-.|+.+|..++++|+.+..+.++..---|...+...+ -+-.+-.+++++..|..++....-..+....+++.+.
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 345688999999999999999998864333333333221 1346778999999999988766666666679999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHH
Q 012813 426 KLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 426 ~Ll~~~~~~~k~~A~~~L~~l 446 (456)
+++..|++-.|.-|..|++.+
T Consensus 196 rIme~gSElSktvaifI~qki 216 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKI 216 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999998888754
No 239
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.82 E-value=0.32 Score=47.69 Aligned_cols=60 Identities=20% Similarity=0.429 Sum_probs=46.7
Q ss_pred ccccccchhhccCcc-----cCCCCccccHHHHHHHHhcC-CCCCCCCcccccCCCCcccHHHHHH
Q 012813 75 EFKCPLSKELMRDPV-----ILASGQTFDRPYIQRWLKAG-NRTCPRTQQVLSHTILTPNHLIREM 134 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv-----~l~~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~~~~l~~n~~lk~~ 134 (456)
-.+||||.+-..-|+ .+.|||-|--.||++|+-.. ...||.|....+..++.+-..+|..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 468999998887774 56699999999999999521 2469999877777777777777654
No 240
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.23 E-value=22 Score=34.31 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=99.1
Q ss_pred CCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc--chhHHHh--
Q 012813 175 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD--NNKKLVA-- 250 (456)
Q Consensus 175 ~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~-- 250 (456)
.+...|+.|+++|...+--+.+. +. ..++.+...++ .++..++..|+.+|..+...- +.-....
T Consensus 39 ~~~~vR~~al~cLGl~~Lld~~~----a~--~~l~l~~~~~~------~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 39 SDPAVRELALKCLGLCCLLDKEL----AK--EHLPLFLQALQ------KDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred CCHHHHHHHHHHHHHHHHhChHH----HH--HHHHHHHHHHH------hCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 44688999999999988865432 22 34666777775 347899999999998773221 1111111
Q ss_pred ----cCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcccc----CChhHHHHHHHHHHHh
Q 012813 251 ----ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE----GHQSAMKDVASAIFNL 322 (456)
Q Consensus 251 ----~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~----~~~~~~~~a~~aL~~L 322 (456)
....++..+.+.|.+.+++++..++..+..|-..+.... ...++..|+-+--+ ++..++..-...+-..
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred CccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 112356677888888899999999999999876543322 13344444443322 2445555555556666
Q ss_pred ccCchhhHHHHhcCcHHHHHHHHcC
Q 012813 323 CITHENKARAVRDGGVSVILKKIMD 347 (456)
Q Consensus 323 ~~~~~~~~~~v~~g~v~~Lv~lL~~ 347 (456)
|......+..+....+|.+-.+...
T Consensus 184 ~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 184 ASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 7666655556666677777776654
No 241
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.15 E-value=10 Score=40.66 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=66.8
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhc-cccCChhHHHHHHHHHHHhccCchhhHHH
Q 012813 254 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDL-LDEGHQSAMKDVASAIFNLCITHENKARA 332 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~l-L~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 332 (456)
++-+.+-+++.+.++-.|...+-++. |+-.. -++.++|..|+.. +++.+.++++.|..+|+-++..+..
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~a-lAy~G-----Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---- 588 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLA-LAYVG-----TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---- 588 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHH-HHHhc-----cCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh----
Confidence 45565666777777777777654433 11111 1335677888877 5567899999999999988765532
Q ss_pred HhcCcHHHHHHHHcC---CchHHHHHHHHHHhhCCHHHHHH
Q 012813 333 VRDGGVSVILKKIMD---GVHVDELLAILAMLSTNHRAVEE 370 (456)
Q Consensus 333 v~~g~v~~Lv~lL~~---~~~~~~a~~~L~~L~~~~~~~~~ 370 (456)
..|..+.+|.+ +.++.-++.+|..-|.+.-.+++
T Consensus 589 ----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA 625 (929)
T KOG2062|consen 589 ----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA 625 (929)
T ss_pred ----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH
Confidence 34667777774 36777788888877765444433
No 242
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.14 E-value=4 Score=38.69 Aligned_cols=161 Identities=22% Similarity=0.205 Sum_probs=99.2
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhccCCc-hhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCC-
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRALFGESHDA-IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM- 254 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~- 254 (456)
.+.+.-++-.+|.+.. ++..-..+....+. ...+..++..+.. ...+..+--+++++.|+-.+...+..+.....
T Consensus 77 ~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~ 153 (268)
T PF08324_consen 77 PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSS--SSPPANQMLALRLLANLFSHPPGRQLLLSHFDS 153 (268)
T ss_dssp CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTT--TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHT
T ss_pred CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccC--CCcHHHHHHHHHHHHHhhCCCccHHHHHhcccc
Confidence 3456667777777766 44444444441222 4455555544332 24567778899999999998888888876543
Q ss_pred CHHHHHHHHhcC----CHHHHHHHHHHHHHhccCC-ccc-hhhcccCccHHHHhcccc--CChhHHHHHHHHHHHhccCc
Q 012813 255 VIPLLMDALRSG----TIETRSNAAAALFTLSALD-SNK-EVIGKSGALKPLIDLLDE--GHQSAMKDVASAIFNLCITH 326 (456)
Q Consensus 255 ~i~~Lv~lL~~~----~~~~~~~aa~aL~~Ls~~~-~~~-~~i~~~G~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~ 326 (456)
.+...+..+... +..++.+++.+++|++..- .++ ..-.....+..+++.+.. .++++...++.||++|...+
T Consensus 154 ~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~ 233 (268)
T PF08324_consen 154 SILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSS 233 (268)
T ss_dssp CHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC
Confidence 233333333333 5778999999999998632 222 111122356666664432 58999999999999999877
Q ss_pred hhhHHHHhc-CcHHH
Q 012813 327 ENKARAVRD-GGVSV 340 (456)
Q Consensus 327 ~~~~~~v~~-g~v~~ 340 (456)
......... |+-..
T Consensus 234 ~~~~~~~~~l~~~~~ 248 (268)
T PF08324_consen 234 DSAKQLAKSLDVKSV 248 (268)
T ss_dssp HHHHHHCCCCTHHHH
T ss_pred hhHHHHHHHcChHHH
Confidence 666666553 44333
No 243
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=87.13 E-value=0.41 Score=45.64 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=33.1
Q ss_pred cccchhhcc--CcccCC--CCccccHHHHHHHHhcCCCCCCCCcccccCC
Q 012813 78 CPLSKELMR--DPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 123 (456)
Q Consensus 78 Cpi~~~~m~--dPv~l~--~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 123 (456)
||+|.+.|. |.-..| ||..+||-|-...-..-+..||-||...+.+
T Consensus 17 cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 17 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 999999994 555555 6887788875544443356899999877654
No 244
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=87.07 E-value=4 Score=41.57 Aligned_cols=138 Identities=19% Similarity=0.163 Sum_probs=90.3
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC-cc-----------
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH-DN----------- 244 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~-~~----------- 244 (456)
...+..++..+.++++. --.|..=.. ...+..|+.+|. ++++...|+..+.-+..+ ++
T Consensus 244 ~~~~~~~~~~~~Wi~Ka-Lv~R~~~~~-~~~~~~L~~lL~--------~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vk 313 (415)
T PF12460_consen 244 SELRPQALEILIWITKA-LVMRGHPLA-TELLDKLLELLS--------SPELGQQAAKAFGILLSDSDDVLNKENHANVK 313 (415)
T ss_pred cchhHHHHHHHHHHHHH-HHHcCCchH-HHHHHHHHHHhC--------ChhhHHHHHHHHhhHhcCcHHhcCccccchhh
Confidence 34455666666555552 001100000 234667778777 356677777777666554 21
Q ss_pred --hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc-cCccHHHHhccccCChhHHHHHHHHHHH
Q 012813 245 --NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFN 321 (456)
Q Consensus 245 --~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~a~~aL~~ 321 (456)
+|+.+... ++|.|++-.+..+.+.+.+-..+|.++..+-.....+.+ ...+|.|++-|+.++.+++..++.+|..
T Consensus 314 lLykQR~F~~--~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 314 LLYKQRFFTQ--VLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred hHHhHHHHHH--HHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 24555543 678888888877777888888888888775443333333 3689999999998999999999999999
Q ss_pred hccCc
Q 012813 322 LCITH 326 (456)
Q Consensus 322 L~~~~ 326 (456)
+....
T Consensus 392 ~l~~~ 396 (415)
T PF12460_consen 392 ILEEA 396 (415)
T ss_pred HHHcC
Confidence 87766
No 245
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.91 E-value=1.5 Score=40.49 Aligned_cols=80 Identities=25% Similarity=0.276 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhccCCccchhhcccC-------ccHHHHhcccc-CChhHHHHHHHHHHHhccCchhhHHH--HhcCc
Q 012813 268 IETRSNAAAALFTLSALDSNKEVIGKSG-------ALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARA--VRDGG 337 (456)
Q Consensus 268 ~~~~~~aa~aL~~Ls~~~~~~~~i~~~G-------~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~--v~~g~ 337 (456)
..-|+.|..+|+.|+..+.|-..|...+ .+..|+++|.. +++-.++-|+..|.+|+..++.-.++ .+.++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 3569999999999999999988887754 34445555544 46677888999999999877644433 45688
Q ss_pred HHHHHHHHcC
Q 012813 338 VSVILKKIMD 347 (456)
Q Consensus 338 v~~Lv~lL~~ 347 (456)
|..|+.++.+
T Consensus 218 i~~Li~FiE~ 227 (257)
T PF12031_consen 218 ISHLIAFIED 227 (257)
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 246
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=61 Score=36.49 Aligned_cols=255 Identities=16% Similarity=0.101 Sum_probs=135.8
Q ss_pred hhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 164 DHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 164 ~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
..+..|++.+++ +..++=.|++.+..++...+ . .+++ ..|...++++.- .++...-..++-+|..|+..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~-~Lad--~vi~svid~~~p-----~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P-ELAD--QVIGSVIDLFNP-----AEDDSAWHGACLALAELALR 410 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H-HHHH--HHHHHHHHhcCc-----CCchhHHHHHHHHHHHHHhc
Confidence 344455555543 35567789999999988766 2 2333 366667775553 23455666888888888766
Q ss_pred cchhHHHhcCCCCHHHHHHHHhcC--------CHHHHHHHHHHHHHhccCCccc--hhhcccCccHHHHhccccCChhHH
Q 012813 243 DNNKKLVAETPMVIPLLMDALRSG--------TIETRSNAAAALFTLSALDSNK--EVIGKSGALKPLIDLLDEGHQSAM 312 (456)
Q Consensus 243 ~~~~~~i~~~~~~i~~Lv~lL~~~--------~~~~~~~aa~aL~~Ls~~~~~~--~~i~~~G~i~~Lv~lL~~~~~~~~ 312 (456)
.-....... .++|.++.-|... ...+|.+|+-+++.++...+.. ..+...=+-..|...+=+....++
T Consensus 411 GlLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 411 GLLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCR 488 (1133)
T ss_pred CCcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHh
Confidence 543333333 3677776666322 2468888888888887643221 112111011122223334566778
Q ss_pred HHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC-----chHHHHHHHHH-HhhCCHHHHHHHHhhCcHHHHH-HHhh
Q 012813 313 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-----VHVDELLAILA-MLSTNHRAVEEIGDLGGVSCML-RIIR 385 (456)
Q Consensus 313 ~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~-----~~~~~a~~~L~-~L~~~~~~~~~i~~~g~i~~Lv-~ll~ 385 (456)
..|..|+-.......|. |.=++++..- ..+.++-..|. .++..+..++-+.++ |+ +-+.
T Consensus 489 RAAsAAlqE~VGR~~n~---------p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~ 554 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNF---------PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVC 554 (1133)
T ss_pred HHHHHHHHHHhccCCCC---------CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccc
Confidence 88888887665544333 2212222210 11111111111 122233333333332 33 2244
Q ss_pred hcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHH----HHHHHHHHHHHHhcch
Q 012813 386 ESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTAR----AKRKATGILERLKRTV 450 (456)
Q Consensus 386 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~----~k~~A~~~L~~l~~~~ 450 (456)
+- +...++.|..+|..|+...++. .. ....++++.-..+++.. .--.+..++.++.++.
T Consensus 555 HW-d~~irelaa~aL~~Ls~~~pk~---~a--~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~ 617 (1133)
T KOG1943|consen 555 HW-DVKIRELAAYALHKLSLTEPKY---LA--DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE 617 (1133)
T ss_pred cc-cHHHHHHHHHHHHHHHHhhHHh---hc--ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh
Confidence 44 4899999999999998877643 21 24556666654444443 2345555666665554
No 247
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=86.61 E-value=2.5 Score=36.72 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=88.6
Q ss_pred chhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-
Q 012813 207 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD- 285 (456)
Q Consensus 207 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~- 285 (456)
.+..++..|... ...++++..+.-++..+- +..+....+. +-..+-.++..+..+....+..++..|=...
T Consensus 4 ~l~~lL~~L~~~----~~~~~~r~~a~v~l~k~l--~~~~~~~~~~--~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~ 75 (157)
T PF11701_consen 4 ELDTLLTSLDML----RQPEEVRSHALVILSKLL--DAAREEFKEK--ISDFIESLLDEGEMDSLIIAFSALTALFPGPP 75 (157)
T ss_dssp CCCHHHHHHHCT----TTSCCHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHHhccc----CCCHhHHHHHHHHHHHHH--HHhHHHHHHH--HHHHHHHHHccccchhHHHHHHHHHHHhCCCH
Confidence 344555555421 124677888877777662 3334433321 3344445555555556777777777765543
Q ss_pred cc-chhhcccCccHHHHhccc--cCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCc----hHHHHHHHH
Q 012813 286 SN-KEVIGKSGALKPLIDLLD--EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV----HVDELLAIL 358 (456)
Q Consensus 286 ~~-~~~i~~~G~i~~Lv~lL~--~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~----~~~~a~~~L 358 (456)
+- ...+...|.++.++.++. ..+..+...++.+|..=|.+...|..+. ..+++.|-+++.... ++..|+-+|
T Consensus 76 dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 76 DVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 33 345557899999999998 6778888888888887766665555444 447788888886432 556665555
Q ss_pred H
Q 012813 359 A 359 (456)
Q Consensus 359 ~ 359 (456)
.
T Consensus 155 ~ 155 (157)
T PF11701_consen 155 C 155 (157)
T ss_dssp H
T ss_pred h
Confidence 4
No 248
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=86.15 E-value=0.66 Score=46.72 Aligned_cols=175 Identities=10% Similarity=0.042 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhccCCccchhhc-ccCccHHHHhccccCChhHHHHHHHHHHHhccCc----hh-hHHHHhc-C-cHHHH
Q 012813 270 TRSNAAAALFTLSALDSNKEVIG-KSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH----EN-KARAVRD-G-GVSVI 341 (456)
Q Consensus 270 ~~~~aa~aL~~Ls~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~----~~-~~~~v~~-g-~v~~L 341 (456)
.+..|.+++.-+...+..+...+ -..+...+...|.+..-.++..+++++.|++..- .+ +....+. | .+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 34444444444445554444332 2344555555565555667889999999886421 11 1111111 1 12222
Q ss_pred HHHHc-----CCchHHHHHHHHHHhhCCHH-----HHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhH
Q 012813 342 LKKIM-----DGVHVDELLAILAMLSTNHR-----AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKW 411 (456)
Q Consensus 342 v~lL~-----~~~~~~~a~~~L~~L~~~~~-----~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~ 411 (456)
+..-. ...+...++.+|.|+...-+ +-.+ ...|.+..+..-.-....-.+|-+|+.++.||..+..-..
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e-~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAE-IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHH-HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 22221 12677888888888875311 1111 1223344444322222347889999999999999765433
Q ss_pred HHHHHhhccHHHHHHHhh-cCCHHHHHHHHHHHHH
Q 012813 412 KAMREEESTHGTISKLAQ-DGTARAKRKATGILER 445 (456)
Q Consensus 412 ~~~~~~~g~~~~L~~Ll~-~~~~~~k~~A~~~L~~ 445 (456)
+.+-....+.+.|..|+. ..+..++-+|+.+|..
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 333333344556666654 4588888888888754
No 249
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=86.10 E-value=2 Score=46.74 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=94.3
Q ss_pred CchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC
Q 012813 206 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 285 (456)
Q Consensus 206 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~ 285 (456)
..+|.|++.... .....+.+-+.+|.+.-.+-+....+-..+..+|.|++-|.-++..+|..+..++.-+....
T Consensus 867 ~ivP~l~~~~~t------~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 867 DIVPILVSKFET------APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred hhHHHHHHHhcc------CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 578899888872 23455556666666655544433333334457888888888888899988888877655422
Q ss_pred ccchhhcccCccHHHHhccccCC---hhHHHHHHHHHHHhcc-CchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHH
Q 012813 286 SNKEVIGKSGALKPLIDLLDEGH---QSAMKDVASAIFNLCI-THENKARAVRDGGVSVILKKIMDG--VHVDELLAI 357 (456)
Q Consensus 286 ~~~~~i~~~G~i~~Lv~lL~~~~---~~~~~~a~~aL~~L~~-~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~ 357 (456)
..-..---.-.+|.++.+=++.+ .-++..|+.+|..|.. .+.+.-.-.+..++..|++.|.++ -+++.|+.+
T Consensus 941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 21111111246777777766654 5688999999999988 444444445556888888888886 355556543
No 250
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.99 E-value=34 Score=34.78 Aligned_cols=185 Identities=11% Similarity=0.052 Sum_probs=111.9
Q ss_pred CHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcc-ccC----ChhHHHHHHHHHHHhccCchh
Q 012813 255 VIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL-DEG----HQSAMKDVASAIFNLCITHEN 328 (456)
Q Consensus 255 ~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL-~~~----~~~~~~~a~~aL~~L~~~~~~ 328 (456)
.+..++.+..+. +...+..++..+..|.---..-..+ ...+..+..-+ ... .....+..+|....|.....-
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 455566665544 5777888888777776321110100 12333333333 122 334445555555555443321
Q ss_pred hHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCC-HHH-------------HHHHHhhCcHHHHHHHhhhcCChhHHH
Q 012813 329 KARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN-HRA-------------VEEIGDLGGVSCMLRIIRESTCDRNKE 394 (456)
Q Consensus 329 ~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~-~~~-------------~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 394 (456)
. ....+..|++++.++.....+...+.-+..+ ++. |+.+... .+|.|++-.+..+ +..+.
T Consensus 268 ~----~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~-~~~k~ 341 (415)
T PF12460_consen 268 L----ATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEAD-DEIKS 341 (415)
T ss_pred h----HHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcC-hhhHH
Confidence 1 1124677888888888888888888888876 332 2222222 4677777777554 55888
Q ss_pred HHHHHHHHHhccChhhHHHHH-HhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 395 NCIAILHTICLSDRTKWKAMR-EEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 395 ~A~~~L~~l~~~~~~~~~~~~-~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
+...+|.++..+-|.. ... +-...+|.|++-+...++.++..+..+|..+-..
T Consensus 342 ~yL~ALs~ll~~vP~~--vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKS--VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHHHHHHhhCCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999999988743 222 2235677777777778888999999999877543
No 251
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.63 E-value=50 Score=35.73 Aligned_cols=231 Identities=16% Similarity=0.125 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHH
Q 012813 179 DQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPL 258 (456)
Q Consensus 179 ~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~ 258 (456)
.|.--+..++..+..++.-+. -.|..+..+|+ +.++.+.-+|+.+|.+|+.++..-+..+ ..
T Consensus 222 LqlViVE~Irkv~~~~p~~~~------~~i~~i~~lL~------stssaV~fEaa~tlv~lS~~p~alk~Aa------~~ 283 (948)
T KOG1058|consen 222 LQLVIVELIRKVCLANPAEKA------RYIRCIYNLLS------STSSAVIFEAAGTLVTLSNDPTALKAAA------ST 283 (948)
T ss_pred HHHHHHHHHHHHHhcCHHHhh------HHHHHHHHHHh------cCCchhhhhhcceEEEccCCHHHHHHHH------HH
Confidence 344445555555554444332 34445667777 4466777777777777776654322222 12
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCc
Q 012813 259 LMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 337 (456)
Q Consensus 259 Lv~lL~~-~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~ 337 (456)
+++++.. ++..++--..--|..+. .+-..+. .|.+--++.+|++++.++++.++....-|+.+... .. .
T Consensus 284 ~i~l~~kesdnnvklIvldrl~~l~---~~~~~il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv-ed-----i 353 (948)
T KOG1058|consen 284 YIDLLVKESDNNVKLIVLDRLSELK---ALHEKIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV-ED-----I 353 (948)
T ss_pred HHHHHHhccCcchhhhhHHHHHHHh---hhhHHHH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH-HH-----H
Confidence 2333321 11122222222222222 1111111 24444555677777777888877777777655421 11 1
Q ss_pred HHHHHHHHc---------CCchHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccC
Q 012813 338 VSVILKKIM---------DGVHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 338 v~~Lv~lL~---------~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 407 (456)
+..|-+-+. .+..+..-+.++...+. .|+....+ |+.|++.+...+ +......+..+...-...
T Consensus 354 v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatv-----V~~ll~fisD~N-~~aas~vl~FvrE~iek~ 427 (948)
T KOG1058|consen 354 VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATV-----VSLLLDFISDSN-EAAASDVLMFVREAIEKF 427 (948)
T ss_pred HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHH-----HHHHHHHhccCC-HHHHHHHHHHHHHHHHhC
Confidence 112221111 11345556667777665 36544443 677888887543 433333333334333333
Q ss_pred hhhHHHHHHhhccHHHHHHHh-hcCCHHHHHHHHHHHHHHhcc
Q 012813 408 RTKWKAMREEESTHGTISKLA-QDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 408 ~~~~~~~~~~~g~~~~L~~Ll-~~~~~~~k~~A~~~L~~l~~~ 449 (456)
+.... ..++.|+.-+ +-.+..+.+.|.|++-..+..
T Consensus 428 p~Lr~------~ii~~l~~~~~~irS~ki~rgalwi~GeYce~ 464 (948)
T KOG1058|consen 428 PNLRA------SIIEKLLETFPQIRSSKICRGALWILGEYCEG 464 (948)
T ss_pred chHHH------HHHHHHHHhhhhhcccccchhHHHHHHHHHhh
Confidence 33211 2223333322 223455777788887766543
No 252
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=85.55 E-value=32 Score=34.56 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=93.1
Q ss_pred hcc-cCccHHHHhccccC---ChhHHHHHHHHHHHhccCchhhHHH-HhcCcHHHHHHHHc-CC-----chHHHHHHHHH
Q 012813 291 IGK-SGALKPLIDLLDEG---HQSAMKDVASAIFNLCITHENKARA-VRDGGVSVILKKIM-DG-----VHVDELLAILA 359 (456)
Q Consensus 291 i~~-~G~i~~Lv~lL~~~---~~~~~~~a~~aL~~L~~~~~~~~~~-v~~g~v~~Lv~lL~-~~-----~~~~~a~~~L~ 359 (456)
+.+ ...+..|..++++. .+.+...|+..+..+--++...-.+ .+.|.++.+++.+. .+ ++....-.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 334 44566666666654 5678889999999988777655555 57899999999998 43 33444557888
Q ss_pred HhhCCHHHHHHHHhhCcHHHHHHHhhhcCCh------hHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC
Q 012813 360 MLSTNHRAVEEIGDLGGVSCMLRIIRESTCD------RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG 431 (456)
Q Consensus 360 ~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~------~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~ 431 (456)
.||-+.+|.+.+.+.+.++.+++++.+...- ..-..--..+-.|.++.+.. +..+.. .++..+.++..-|
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~L-k~~i~~-~ii~~l~~l~~~g 256 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSL-KPDIID-AIIKILDRLVELG 256 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHH-HHHHHH-HHHHHHHHHHHHh
Confidence 9999999999999999999999998753111 11112223455667777654 333322 5566666665443
No 253
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.50 E-value=0.28 Score=33.63 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=35.3
Q ss_pred ccccchhhccCcccCCCCccc-cHHHHHHHHhcCCCCCCCCcccc
Q 012813 77 KCPLSKELMRDPVILASGQTF-DRPYIQRWLKAGNRTCPRTQQVL 120 (456)
Q Consensus 77 ~Cpi~~~~m~dPv~l~~g~~~-~r~~I~~~~~~~~~~~P~~~~~l 120 (456)
-|.||.+---|-|+--|||-. |-.|=.+-+...+..||.||.|+
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 488998887888888899865 88877666665678999999875
No 254
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.47 E-value=24 Score=39.84 Aligned_cols=217 Identities=16% Similarity=0.195 Sum_probs=115.6
Q ss_pred CchhHHHHHHHHHHHhhcCchhhhhhhcc-CCchhhhhhccccccccCCCChhhHHHHHHHHHccccC--cchhHHHhcC
Q 012813 176 TLPDQTEAAKELRLLTKRMPSFRALFGES-HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH--DNNKKLVAET 252 (456)
Q Consensus 176 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~ 252 (456)
+...|.++-..|..++.. +.......+. ......|.+-++ +.+...+..++.+|..+-.. .+....+..
T Consensus 667 ~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~q------s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k- 738 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQ------SSSSPAQASRLKCLKRLLKLLSAEHCDLIPK- 738 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHh------ccchHHHHHHHHHHHHHHHhccHHHHHHHHH-
Confidence 467888888888888874 3332222210 012233333333 23344555555555544221 122222222
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc----CCccchhhcccCccHHHHhccccC----ChhHHHHHHHHHHHhcc
Q 012813 253 PMVIPLLMDALRSGTIETRSNAAAALFTLSA----LDSNKEVIGKSGALKPLIDLLDEG----HQSAMKDVASAIFNLCI 324 (456)
Q Consensus 253 ~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~----~~~~~~~i~~~G~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~ 324 (456)
.||-++-.++.-+...|+++..+|..++. .++.... ....|...+.++..+ ........+-++..+..
T Consensus 739 --~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 739 --LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred --HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 35545555577789999999999988872 1111111 111444444444433 22222222344444432
Q ss_pred CchhhHHHHhcCcHHHHHHHH----cCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHH
Q 012813 325 THENKARAVRDGGVSVILKKI----MDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 397 (456)
Q Consensus 325 ~~~~~~~~v~~g~v~~Lv~lL----~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~ 397 (456)
+...+.+.+.++.+++.+ .+. .+...|++.+..++.. |+..-.-...-.++.+..+++... ...+....
T Consensus 815 ---e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-~~~r~Kvr 890 (1176)
T KOG1248|consen 815 ---EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-IKVRKKVR 890 (1176)
T ss_pred ---HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-HHHHHHHH
Confidence 222233444455555544 333 6788899999988874 554433333335778888777543 77788788
Q ss_pred HHHHHHhccCh
Q 012813 398 AILHTICLSDR 408 (456)
Q Consensus 398 ~~L~~l~~~~~ 408 (456)
.+|..|+....
T Consensus 891 ~LlekLirkfg 901 (1176)
T KOG1248|consen 891 LLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHhC
Confidence 88887776543
No 255
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.39 E-value=4 Score=42.72 Aligned_cols=100 Identities=16% Similarity=0.231 Sum_probs=64.0
Q ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc
Q 012813 165 HFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 244 (456)
Q Consensus 165 ~i~~Lv~~L~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 244 (456)
....++...+++...+.-|..-|....+..++... .++..+++++. ++|..++..|+..|-.++.+..
T Consensus 24 ~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~------~Ai~a~~DLcE------Ded~~iR~~aik~lp~~ck~~~ 91 (556)
T PF05918_consen 24 DYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQE------EAINAQLDLCE------DEDVQIRKQAIKGLPQLCKDNP 91 (556)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHH------HHHHHHHHHHT-------SSHHHHHHHHHHGGGG--T--
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHh------cccHHHHHHHHHhHHHHHHhHH
Confidence 45566666677777888888888888887777643 47778999998 6789999999999999998753
Q ss_pred -hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 012813 245 -NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS 282 (456)
Q Consensus 245 -~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls 282 (456)
....+ ...|+.+|.+.++.-...+-.+|..|-
T Consensus 92 ~~v~kv------aDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 92 EHVSKV------ADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp T-HHHH------HHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred HHHhHH------HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33333 344777887776555555445555443
No 256
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=85.10 E-value=18 Score=37.79 Aligned_cols=206 Identities=15% Similarity=0.101 Sum_probs=112.9
Q ss_pred CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhc--CCHHHHHHHHHHHHHh-ccCCccchh-hcc--cC-
Q 012813 223 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS--GTIETRSNAAAALFTL-SALDSNKEV-IGK--SG- 295 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~--~~~~~~~~aa~aL~~L-s~~~~~~~~-i~~--~G- 295 (456)
++|+.++-.|-.-|.+++.++=. .++..++..|-+ .+++.|..+.-+|.|- ...++-+.. ... .|
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~--------qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~ 87 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFE--------QFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGM 87 (858)
T ss_pred CCCCCccccHHHHHHHhccccHH--------HHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccC
Confidence 45778888888888888766521 134445666644 3578888888888763 344432221 111 01
Q ss_pred -------ccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc----CC---chHHHHHHHHHHh
Q 012813 296 -------ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM----DG---VHVDELLAILAML 361 (456)
Q Consensus 296 -------~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~----~~---~~~~~a~~~L~~L 361 (456)
+=......|.+..++.-..|+.++..++.-. +-.|.-|-|++.|. ++ ..+.+++.++.++
T Consensus 88 ~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ 161 (858)
T COG5215 88 RHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYH 161 (858)
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHH
Confidence 1111223344444555555555555443211 12355666666654 22 5788899999999
Q ss_pred hCCHHHHHHHHhhCc--HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhc----cHHHHHHHhhcCCHHH
Q 012813 362 STNHRAVEEIGDLGG--VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEES----THGTISKLAQDGTARA 435 (456)
Q Consensus 362 ~~~~~~~~~i~~~g~--i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g----~~~~L~~Ll~~~~~~~ 435 (456)
|....-...+...++ +..+...++++.+..+|-.|+.+|.+=+..-. ..+..++ ++....+.-+..+..+
T Consensus 162 ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~----~nf~~E~erNy~mqvvceatq~~d~e~ 237 (858)
T COG5215 162 CESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQ----GNFCYEEERNYFMQVVCEATQGNDEEL 237 (858)
T ss_pred hhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH----HhhcchhhhchhheeeehhccCCcHHH
Confidence 986322222222332 33344566666668889999999998332211 1111111 3334444556667777
Q ss_pred HHHHHHHHHHH
Q 012813 436 KRKATGILERL 446 (456)
Q Consensus 436 k~~A~~~L~~l 446 (456)
+.+|-..|..+
T Consensus 238 q~aafgCl~ki 248 (858)
T COG5215 238 QHAAFGCLNKI 248 (858)
T ss_pred HHHHHHHHHHH
Confidence 77777666543
No 257
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=84.73 E-value=56 Score=34.32 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=55.0
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcch--------h-H
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN--------K-K 247 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~--------~-~ 247 (456)
.-++.++++.+..++.++ .-..+.+ ..|..|-.+|+ +.....+-.|+++|..|+...+. . .
T Consensus 278 emV~lE~Ar~v~~~~~~n--v~~~~~~--~~vs~L~~fL~------s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEs 347 (898)
T COG5240 278 EMVFLEAARAVCALSEEN--VGSQFVD--QTVSSLRTFLK------STRVVLRFSAMRILNQLAMKYPQKVSVCNKEVES 347 (898)
T ss_pred hhhhHHHHHHHHHHHHhc--cCHHHHH--HHHHHHHHHHh------cchHHHHHHHHHHHHHHHhhCCceeeecChhHHH
Confidence 556778888888887754 1222222 24556666666 44667888999999888654321 1 1
Q ss_pred HHhcCCCCHH--HHHHHHhcCCHHHHHHHHHHHHHhc
Q 012813 248 LVAETPMVIP--LLMDALRSGTIETRSNAAAALFTLS 282 (456)
Q Consensus 248 ~i~~~~~~i~--~Lv~lL~~~~~~~~~~aa~aL~~Ls 282 (456)
.|-..+..|. ++..+|+.|+.+....-...+-+..
T Consensus 348 LIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfv 384 (898)
T COG5240 348 LISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFV 384 (898)
T ss_pred HhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 2222222222 3567778887665555444444443
No 258
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.46 E-value=0.47 Score=46.05 Aligned_cols=48 Identities=25% Similarity=0.478 Sum_probs=40.3
Q ss_pred cccccchhhccC---cccCCCCccccHHHHHHHHhcCCCCCCCCcccccCC
Q 012813 76 FKCPLSKELMRD---PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 123 (456)
Q Consensus 76 f~Cpi~~~~m~d---Pv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 123 (456)
+.|-|+++.|.| |++.|+|++|--..|+.|-..++-.||.++..+...
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 578899999976 889999999999999999876457899998766543
No 259
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=84.30 E-value=0.81 Score=46.10 Aligned_cols=178 Identities=10% Similarity=0.037 Sum_probs=100.7
Q ss_pred hHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC-C---cc----chhhcccCccHH
Q 012813 228 LQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-D---SN----KEVIGKSGALKP 299 (456)
Q Consensus 228 ~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~-~---~~----~~~i~~~G~i~~ 299 (456)
+...|.+++.-+..++..+....-...+...+...|.+..-..|+-++|++.|++.. . .+ ...+.. -.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHH
Confidence 445556666555566654443322112455667777777778899999999998631 1 11 111111 01222
Q ss_pred HHhcc---ccCChhHHHHHHHHHHHhccCchhh----HHHHhcCcHHHHHHHHc-CC--chHHHHHHHHHHhhCCHHHH-
Q 012813 300 LIDLL---DEGHQSAMKDVASAIFNLCITHENK----ARAVRDGGVSVILKKIM-DG--VHVDELLAILAMLSTNHRAV- 368 (456)
Q Consensus 300 Lv~lL---~~~~~~~~~~a~~aL~~L~~~~~~~----~~~v~~g~v~~Lv~lL~-~~--~~~~~a~~~L~~L~~~~~~~- 368 (456)
++.+- ..++..+..+|.++|.|+..--+-- -.....|.+..++.-.- .+ .++-+++.++.||-+++...
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 22211 1236678899999999987532210 00111122222222111 11 67889999999999987542
Q ss_pred HHH-HhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhcc
Q 012813 369 EEI-GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 406 (456)
Q Consensus 369 ~~i-~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 406 (456)
+.+ ...-+.+.|..++....+-+++.+|+++|..-...
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 111 12235788888888655688899999998876543
No 260
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=84.00 E-value=21 Score=37.80 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=96.7
Q ss_pred CchhHHHHHHHHHHHhhcCchhhhhhhc--cCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCC
Q 012813 176 TLPDQTEAAKELRLLTKRMPSFRALFGE--SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 253 (456)
Q Consensus 176 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~ 253 (456)
+.+++.-|+-.||.+.++...+-..+-. ....+..++..++ .++.-+--+++.|.|+-.+..++..+...
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-------~~~an~ll~vR~L~N~f~~~~g~~~~~s~- 628 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-------ADPANQLLVVRCLANLFSNPAGRELFMSR- 628 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-------cchhHHHHHHHHHHHhccCHHHHHHHHHH-
Confidence 3556777888888888865554333321 1234455555554 24677788999999998887666666543
Q ss_pred CCHHHHHHH---HhcC-CHHHHHHHHHHHHHhcc--CCccchhhcccCccHHHHhcccc-----CChhHHHHHHHHHHHh
Q 012813 254 MVIPLLMDA---LRSG-TIETRSNAAAALFTLSA--LDSNKEVIGKSGALKPLIDLLDE-----GHQSAMKDVASAIFNL 322 (456)
Q Consensus 254 ~~i~~Lv~l---L~~~-~~~~~~~aa~aL~~Ls~--~~~~~~~i~~~G~i~~Lv~lL~~-----~~~~~~~~a~~aL~~L 322 (456)
...+... .+++ +..++.+.+....|++. ..++-+ .|..+.|..++.. ++-++.-.++.||.+|
T Consensus 629 --~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 629 --LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred --HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 2222222 2333 35677776766667653 233322 3444444444432 2445677789999999
Q ss_pred ccCchhhHHHHhcCcHHHHHHHHcC
Q 012813 323 CITHENKARAVRDGGVSVILKKIMD 347 (456)
Q Consensus 323 ~~~~~~~~~~v~~g~v~~Lv~lL~~ 347 (456)
+..+.+..++...-.|..+++.+++
T Consensus 703 ~t~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 703 MTVDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccccHHHHHHHHhcCHHHHHHHHHH
Confidence 9999888888776667777777664
No 261
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=83.85 E-value=0.73 Score=49.65 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=23.9
Q ss_pred HHHHHHHHHh-hCCCCCHHHHHHHHHHHHHhh
Q 012813 23 ELQKLVRLIV-DDVDYRTETIDQARDTLCALK 53 (456)
Q Consensus 23 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 53 (456)
..++|+++|+ |+|+|++++|++|.++++|.+
T Consensus 579 ~~~~F~~ava~D~Rsy~~~lf~~a~~~l~~~~ 610 (629)
T PF10408_consen 579 DSDKFVQAVANDGRSYSPELFEKAVRILRRIG 610 (629)
T ss_dssp T-HHHHHHHHH-TTT--HHHHHHHHHHHTTST
T ss_pred CchHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 3457999998 669999999999999999865
No 262
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.79 E-value=0.58 Score=45.30 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=37.8
Q ss_pred cccccchhhccCcccCCCCccc-cHHHHHHHHhcCCCCCCCCcccccC
Q 012813 76 FKCPLSKELMRDPVILASGQTF-DRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 76 f~Cpi~~~~m~dPv~l~~g~~~-~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
-.|=||+.--+|-+++||-|.. |..|-+.---. +..||.||+|+..
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEE 337 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchHh
Confidence 5699999999999999999987 99887665433 4579999999753
No 263
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=83.74 E-value=4.5 Score=44.18 Aligned_cols=209 Identities=16% Similarity=0.080 Sum_probs=117.0
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc------------
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN------------ 244 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~------------ 244 (456)
.+.++.|+..+.++.+. --.|..-.. ..+-..|+++|+. +++-..++.++.-+..+..
T Consensus 788 ~dls~~al~~l~Wv~Ka-Ll~R~~~~s-~~ia~klld~Ls~--------~~~g~~aa~~fsiim~D~~~~~~r~~~a~~r 857 (1030)
T KOG1967|consen 788 LDLSEIALTVLAWVTKA-LLLRNHPES-SEIAEKLLDLLSG--------PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPR 857 (1030)
T ss_pred cchhhHHHHHHHHHHHH-HHHcCCccc-chHHHHHHHhcCC--------ccccchHHHhhHhhhccChHHhhhccccchh
Confidence 44566677766666552 111111111 2334567777773 3333344444433332221
Q ss_pred --hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc--cCccHHHHhccccCChhHHHHHHHHHH
Q 012813 245 --NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIF 320 (456)
Q Consensus 245 --~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~a~~aL~ 320 (456)
.|+.+.. ..+|.|++..+..+...+.+-..+|.++-.+- .+..+.. .-.+|.|++.|+-.|..++-.++.+|.
T Consensus 858 iLykQRfF~--~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v-P~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~ 934 (1030)
T KOG1967|consen 858 ILYKQRFFC--DIVPILVSKFETAPGSQKHNYLEALSHVLTNV-PKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIP 934 (1030)
T ss_pred HHHHHHHHH--hhHHHHHHHhccCCccchhHHHHHHHHHHhcC-CHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhh
Confidence 2444443 36888888887555556666666676655422 2344443 468899999999999999888888888
Q ss_pred HhccCchhhHHHHhcCcHHHHHHHHcCC-----chHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcCChhHHH
Q 012813 321 NLCITHENKARAVRDGGVSVILKKIMDG-----VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKE 394 (456)
Q Consensus 321 ~L~~~~~~~~~~v~~g~v~~Lv~lL~~~-----~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 394 (456)
-+....+--..---.-.||.++.+=.+. .+++.|+..|..|.. -|-.+-.-.+..++..|...|.... -.+|+
T Consensus 935 ~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK-RlVR~ 1013 (1030)
T KOG1967|consen 935 MLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK-RLVRK 1013 (1030)
T ss_pred HHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH-HHHHH
Confidence 7654332111111113566666654443 357889999999988 3432222223335666777776432 34566
Q ss_pred HHHHH
Q 012813 395 NCIAI 399 (456)
Q Consensus 395 ~A~~~ 399 (456)
.|+++
T Consensus 1014 eAv~t 1018 (1030)
T KOG1967|consen 1014 EAVDT 1018 (1030)
T ss_pred HHHHH
Confidence 66654
No 264
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.53 E-value=0.74 Score=49.87 Aligned_cols=49 Identities=14% Similarity=0.462 Sum_probs=35.9
Q ss_pred CCCccccccchhhcc--CcccCC------CCccccHHHHHHHHhc-CCCCCCCCccccc
Q 012813 72 CPEEFKCPLSKELMR--DPVILA------SGQTFDRPYIQRWLKA-GNRTCPRTQQVLS 121 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~--dPv~l~------~g~~~~r~~I~~~~~~-~~~~~P~~~~~l~ 121 (456)
..++=-|+||..++. |- .+| |.|.|--+|+.+|+.+ ++.+||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr-~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDR-SLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhc-cCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 445557999999986 32 343 4566777999999974 5678999996554
No 265
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.49 E-value=3.7 Score=35.97 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=71.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhccc--CccHHHHhccccC-ChhHHHHHHHHHHHhccCchhhHH
Q 012813 255 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKS--GALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKAR 331 (456)
Q Consensus 255 ~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~--G~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~ 331 (456)
.+..+..+|++++...|..++..+..++...+. ..+.+. -.+..|+.+|+.. ++.+.+.++.+|..|...-.+...
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 455678888898999999988888777764432 334333 4788888999875 456778888888877654443333
Q ss_pred HHhc-------CcHHHHHHHHcCCchHHHHHHHHHHhhC
Q 012813 332 AVRD-------GGVSVILKKIMDGVHVDELLAILAMLST 363 (456)
Q Consensus 332 ~v~~-------g~v~~Lv~lL~~~~~~~~a~~~L~~L~~ 363 (456)
+.+. +.++.++.++.+....+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3332 3455555655554566777777776654
No 266
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=83.14 E-value=0.32 Score=36.01 Aligned_cols=47 Identities=21% Similarity=0.551 Sum_probs=22.8
Q ss_pred ccccccchhhcc-C---cccC----CCCccccHHHHHHHHhc--CC--------CCCCCCccccc
Q 012813 75 EFKCPLSKELMR-D---PVIL----ASGQTFDRPYIQRWLKA--GN--------RTCPRTQQVLS 121 (456)
Q Consensus 75 ~f~Cpi~~~~m~-d---Pv~l----~~g~~~~r~~I~~~~~~--~~--------~~~P~~~~~l~ 121 (456)
+..|+||++... + |+++ .||++|=+.|+.+||.. +. .+||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998754 2 5544 36888999999999973 11 24999998875
No 267
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=82.67 E-value=8.5 Score=32.88 Aligned_cols=71 Identities=8% Similarity=0.145 Sum_probs=58.1
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLK 447 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~-~~~~~k~~A~~~L~~l~ 447 (456)
++..|.+-|.+. ++.++..|+.+|-.+..+.......-+....++..|.+++.. ..+.++++...+++...
T Consensus 38 a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 456677777765 499999999999999998887666655566899999999877 67789999999998775
No 268
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.64 E-value=24 Score=38.51 Aligned_cols=208 Identities=14% Similarity=0.101 Sum_probs=106.6
Q ss_pred hHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHh-cccc
Q 012813 228 LQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID-LLDE 306 (456)
Q Consensus 228 ~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~-lL~~ 306 (456)
++..++..|..+.....-...+... +++...++.|++.++-+--+|...+..||... ...++|-|.+ -...
T Consensus 743 ik~~gL~~l~~l~e~r~~~~~~~~e-kvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-------~e~il~dL~e~Y~s~ 814 (982)
T KOG4653|consen 743 IKGYGLQMLRHLIEKRKKATLIQGE-KVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-------PEDILPDLSEEYLSE 814 (982)
T ss_pred chHHHHHHHHHHHHhcchhhhhhHH-HHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-------chhhHHHHHHHHHhc
Confidence 4445555555555433222222222 35666666666666655556655555555321 1123333333 1111
Q ss_pred C---ChhHHHHHHHHHHHhccC-chhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH--HHHHHHhhCcHH
Q 012813 307 G---HQSAMKDVASAIFNLCIT-HENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHR--AVEEIGDLGGVS 378 (456)
Q Consensus 307 ~---~~~~~~~a~~aL~~L~~~-~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~ 378 (456)
. .++.+-..-.++.++... ++-.....+ -.+...++.++++ ..+..++++|.+||.--. +-..+.+ ++.
T Consensus 815 k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e--v~~ 891 (982)
T KOG4653|consen 815 KKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE--VLQ 891 (982)
T ss_pred ccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH--HHH
Confidence 1 011111122444444321 122222212 3456666666666 468889999999997422 2233333 366
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhh--ccHHHHHHHhhcC-CHHHHHHHHHHHHHH
Q 012813 379 CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE--STHGTISKLAQDG-TARAKRKATGILERL 446 (456)
Q Consensus 379 ~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~--g~~~~L~~Ll~~~-~~~~k~~A~~~L~~l 446 (456)
.++.+.+.+++..+|+.|+.++..+-.+.....-.+.... +....+....... ++.+|-.|...+..+
T Consensus 892 ~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 892 LILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 7788888777789999999999988876654433333221 2222333334333 444666666555543
No 269
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=82.11 E-value=46 Score=31.40 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=62.8
Q ss_pred cCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC----chHHHHHHHHHHhhCCHHHHH
Q 012813 294 SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTNHRAVE 369 (456)
Q Consensus 294 ~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~~~~~~~ 369 (456)
..+|.+|++-+..++.-.+..++.+++.|-+. -+||.|.+.|.+. .++..|+.+|..++..
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----- 250 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----- 250 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----
Confidence 44678888888878877888899998877332 3788899888753 5677788888876632
Q ss_pred HHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 012813 370 EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTI 403 (456)
Q Consensus 370 ~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l 403 (456)
.+++.|.+.+... ++.+++.|.-+|-.+
T Consensus 251 -----~~~~vL~e~~~D~-~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 251 -----DCVEVLKEYLGDE-ERVVRESCEVALDML 278 (289)
T ss_pred -----HHHHHHHHHcCCc-HHHHHHHHHHHHHHH
Confidence 3466677777644 366777777666544
No 270
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=81.99 E-value=28 Score=39.54 Aligned_cols=95 Identities=20% Similarity=0.179 Sum_probs=63.4
Q ss_pred ChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-C---CccchhhcccCccHHH
Q 012813 225 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-L---DSNKEVIGKSGALKPL 300 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~-~---~~~~~~i~~~G~i~~L 300 (456)
..+.+.+|+..|..|+..-..-..+ ..++|-++.++.++...+|..|..+|..+.. . ...-..|.-.-++|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~L---DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKL---DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHH---hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 3677889999999998665433333 2489999999999999999999998877643 1 2223344445578888
Q ss_pred HhccccC-ChhHHHHHHHHHHHh
Q 012813 301 IDLLDEG-HQSAMKDVASAIFNL 322 (456)
Q Consensus 301 v~lL~~~-~~~~~~~a~~aL~~L 322 (456)
-.++.+. ...++-.=+..|..|
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~L 535 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQL 535 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHH
Confidence 8888763 333333334444444
No 271
>PF04641 Rtf2: Rtf2 RING-finger
Probab=81.26 E-value=1.1 Score=42.55 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=32.0
Q ss_pred CccccccchhhccCcccCC-CCccccHHHHHHHHhcC
Q 012813 74 EEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAG 109 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~~ 109 (456)
..++|+||++.+.+||+.. -|+.|.+..|-.|+...
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 3678999999999999765 79999999999999863
No 272
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.73 E-value=79 Score=34.10 Aligned_cols=115 Identities=21% Similarity=0.203 Sum_probs=72.4
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
.+.+..+++...+ +-.++...+..|..+.....+.-.-+.+ +....|..-+. +..+.++.+|+.+|..+-.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn--~l~e~l~~Rl~------Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN--KLNEKLLIRLK------DREPNVRIQAVLALSRLQG 155 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH--HHHHHHHHHHh------ccCchHHHHHHHHHHHHhc
Confidence 3455666666643 4567888888888777643332233333 55666666665 4568999999999998853
Q ss_pred CcchhHHHhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCccchhhcc
Q 012813 242 HDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGK 293 (456)
Q Consensus 242 ~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~~~~~~~i~~ 293 (456)
++.+- ...+...++.+++.. ++++|+.+ |.+++.+......|++
T Consensus 156 d~~de-----e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 156 DPKDE-----ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE 200 (892)
T ss_pred CCCCC-----cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence 33210 113556677777754 78999886 6677766665555553
No 273
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.47 E-value=0.66 Score=34.23 Aligned_cols=46 Identities=26% Similarity=0.484 Sum_probs=32.5
Q ss_pred cccccchhhccC-cccCC-CCccccHHHHHHHHhc--CCCCCCCCccccc
Q 012813 76 FKCPLSKELMRD-PVILA-SGQTFDRPYIQRWLKA--GNRTCPRTQQVLS 121 (456)
Q Consensus 76 f~Cpi~~~~m~d-Pv~l~-~g~~~~r~~I~~~~~~--~~~~~P~~~~~l~ 121 (456)
-.||-|+-.=.| |.++- |.|.|-+.||.+|+.. +...||.+||...
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 356655554444 55554 7889999999999973 2357999998754
No 274
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.43 E-value=15 Score=42.47 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=96.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHH-hccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHH
Q 012813 255 VIPLLMDALRSGTIETRSNAAAALFT-LSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAV 333 (456)
Q Consensus 255 ~i~~Lv~lL~~~~~~~~~~aa~aL~~-Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v 333 (456)
.||.|.+.=-+++..++.+... +++ |..+..+...---..++..|+.-|.+.-=++++.++-||.-|-..+++-. +.
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~s-IW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~-~~ 1076 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTS-IWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ-VK 1076 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHH-HHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH-HH
Confidence 5666666655666777766654 555 43332221111113566777777776667899999999999988765332 22
Q ss_pred hc--CcHHHHHHHHcCC-----chHHHHHHHHHHhhCC------H-HHHHHHHhhCcHHHHH--HHhhhcCChhHHHHHH
Q 012813 334 RD--GGVSVILKKIMDG-----VHVDELLAILAMLSTN------H-RAVEEIGDLGGVSCML--RIIRESTCDRNKENCI 397 (456)
Q Consensus 334 ~~--g~v~~Lv~lL~~~-----~~~~~a~~~L~~L~~~------~-~~~~~i~~~g~i~~Lv--~ll~~~~~~~~~~~A~ 397 (456)
+. .....+.+.+.|= ..-+.++.+|..||-- + .+++ +.+ .++|.|+ .+| +. -+.++..++
T Consensus 1077 e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~-~l~-~iLPfLl~~gim-s~-v~evr~~si 1152 (1702)
T KOG0915|consen 1077 EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE-ALD-IILPFLLDEGIM-SK-VNEVRRFSI 1152 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH-HHH-HHHHHHhccCcc-cc-hHHHHHHHH
Confidence 21 2233334444331 3344567777777641 1 2222 222 2456665 344 23 378999999
Q ss_pred HHHHHHhccChhhHHHHHHhhccHHHHHHHh
Q 012813 398 AILHTICLSDRTKWKAMREEESTHGTISKLA 428 (456)
Q Consensus 398 ~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll 428 (456)
.++.-|+.+.+...+.-+ +..++.|..+.
T Consensus 1153 ~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~ 1181 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHF--PKLIPLLLNAY 1181 (1702)
T ss_pred HHHHHHHHhchhhhcchh--hHHHHHHHHHc
Confidence 999999998876555544 45666666654
No 275
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=80.36 E-value=0.44 Score=51.19 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=38.7
Q ss_pred cccccchhhccCcccCCCCccccHHHHHHHHhcC-CCCCCCCcccccCC
Q 012813 76 FKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG-NRTCPRTQQVLSHT 123 (456)
Q Consensus 76 f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~~~ 123 (456)
+.|++|.+ ..+|++++|||.+|+.|+...+... ...||.|+..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 89999999 8889999999999999999987642 34699987765543
No 276
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.48 E-value=1.1 Score=45.00 Aligned_cols=51 Identities=16% Similarity=0.380 Sum_probs=37.8
Q ss_pred CCCccccccchhhc-----------------cCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 72 CPEEFKCPLSKELM-----------------RDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m-----------------~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
+-..--|+||++.. ++=.+.||.|.|-|.|+++|...-.-.||.||.|+.+
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 44455799987642 1123569999999999999998534579999999864
No 277
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=79.48 E-value=2.1 Score=29.18 Aligned_cols=40 Identities=23% Similarity=0.643 Sum_probs=28.1
Q ss_pred cccchh--hccCcccCCCC-----ccccHHHHHHHHhc-CCCCCCCCc
Q 012813 78 CPLSKE--LMRDPVILASG-----QTFDRPYIQRWLKA-GNRTCPRTQ 117 (456)
Q Consensus 78 Cpi~~~--~m~dPv~l~~g-----~~~~r~~I~~~~~~-~~~~~P~~~ 117 (456)
|-|+.+ --.+|.+.||. +.+=+.++.+|+.. +..+||+++
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 556654 34567778863 45789999999974 345799874
No 278
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.39 E-value=50 Score=37.55 Aligned_cols=129 Identities=21% Similarity=0.191 Sum_probs=93.6
Q ss_pred CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCC
Q 012813 176 TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMV 255 (456)
Q Consensus 176 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~ 255 (456)
+++.|..|.-+|..+..-+.+. .+ ...|.|...+.+ +.++-++.+++.++..++..-++ +++ ..
T Consensus 936 dp~Lq~AAtLaL~klM~iSa~f----ce--s~l~llftimek-----sp~p~IRsN~VvalgDlav~fpn---lie--~~ 999 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISAEF----CE--SHLPLLFTIMEK-----SPSPRIRSNLVVALGDLAVRFPN---LIE--PW 999 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhHHH----HH--HHHHHHHHHHhc-----CCCceeeecchheccchhhhccc---ccc--hh
Confidence 4667777777777776644333 33 467889999886 55799999999999888754432 222 14
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhcc
Q 012813 256 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 324 (456)
Q Consensus 256 i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 324 (456)
-+.|-..|.+.++.+|+.|.-+|.+|-..+.-| -.|-+..++.+|.+++.+....|=.....|+.
T Consensus 1000 T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 1000 TEHLYRRLRDESPSVRKTALLVLSHLILNDMIK----VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred hHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 566788889999999999999999998765432 25788889999999888777777655555544
No 279
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=79.33 E-value=17 Score=31.70 Aligned_cols=144 Identities=14% Similarity=0.096 Sum_probs=82.9
Q ss_pred CccHHHHhccccC-ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHh
Q 012813 295 GALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD 373 (456)
Q Consensus 295 G~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 373 (456)
..++.|+++|+.+ +..++.+++++|+.|-.-+.-+.+....+.-..- ..-.........+ .+....+ .-+++.-
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-~~~~~~~~~~~~l---~~~~~~~-~~ee~y~ 84 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-SENSNDESTDISL---PMMGISP-SSEEYYP 84 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc-cccccccchhhHH---hhccCCC-chHHHHH
Confidence 3567778888775 6889999999999997766655554322111000 0000011222111 1111111 2233333
Q ss_pred hCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHH
Q 012813 374 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILER 445 (456)
Q Consensus 374 ~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~ 445 (456)
..++..|+.+++..+-..-...++.++..+......++...+ ..+++.++..+++.++..++.--.-|..
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 446788999988643344455788888888765544554555 4788999999998777777664444443
No 280
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.16 E-value=0.69 Score=49.03 Aligned_cols=47 Identities=19% Similarity=0.421 Sum_probs=32.5
Q ss_pred ccccccchhhccCccc---CCCCccccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 75 EFKCPLSKELMRDPVI---LASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~---l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
+-.||+|..-+.|-.+ .+|+|-||..||..|... ..+||.++..+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 3467777777777654 347777788888888775 5678888766543
No 281
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.13 E-value=18 Score=39.52 Aligned_cols=175 Identities=14% Similarity=0.133 Sum_probs=104.2
Q ss_pred HHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHH
Q 012813 262 ALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVI 341 (456)
Q Consensus 262 lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~L 341 (456)
.+.++-+.++-++...|..+....+.+..+...+++....+.|++.++-+--+|...+..||.- .....+|-|
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL 807 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL 807 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence 3344456778888888888888777777777889999999999999888888888877777753 334566777
Q ss_pred HHHHcC-C-----chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHH
Q 012813 342 LKKIMD-G-----VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM 414 (456)
Q Consensus 342 v~lL~~-~-----~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~ 414 (456)
.+.-.+ . +.+-..=.++.++... .+-.....+ -.+...+..++.. +...|..+++.|.++|..........
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 663322 1 1111111333333321 110000000 1234445555533 35668888888998888655333333
Q ss_pred HHhhccHHHHHHHhh-cCCHHHHHHHHHHHHHHh
Q 012813 415 REEESTHGTISKLAQ-DGTARAKRKATGILERLK 447 (456)
Q Consensus 415 ~~~~g~~~~L~~Ll~-~~~~~~k~~A~~~L~~l~ 447 (456)
+ ......+..+.+ +|.+-+||.|.-++..+-
T Consensus 886 ~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 886 F--HEVLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred H--HHHHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 3 133334444444 456678888888887653
No 282
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.77 E-value=14 Score=31.43 Aligned_cols=72 Identities=6% Similarity=0.084 Sum_probs=57.6
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc-CCHHHHHHHHHHHHHHhc
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLKR 448 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~-~~~~~k~~A~~~L~~l~~ 448 (456)
++..|.+-|+++ ++.++..|+.+|-.+..+........+...+++..|.+++.. .++.+|+++..++..-..
T Consensus 42 a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 466777777765 499999999999999988766555666667899999999874 466899999999987753
No 283
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.75 E-value=7.6 Score=43.62 Aligned_cols=126 Identities=21% Similarity=0.165 Sum_probs=93.1
Q ss_pred chhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccCC
Q 012813 207 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALD 285 (456)
Q Consensus 207 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~aL~~Ls~~~ 285 (456)
+.|.++...++... ..+|+.+..|.-+|..+..-+ ..+.+. -+|.|+.++. ++++.+|.+++.+++.|+..-
T Consensus 920 f~piv~e~c~n~~~--~sdp~Lq~AAtLaL~klM~iS---a~fces--~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL--FSDPELQAAATLALGKLMCIS---AEFCES--HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHhcCCCc--CCCHHHHHHHHHHHHHHhhhh---HHHHHH--HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 56777777765544 557999999999998875433 223333 4788999998 678999999999999888643
Q ss_pred ccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHh-cCcHHHHHHHHcCC
Q 012813 286 SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR-DGGVSVILKKIMDG 348 (456)
Q Consensus 286 ~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~-~g~v~~Lv~lL~~~ 348 (456)
.|-.. -.-+.|...|.+.++.+++.|..+|.+|-..+ |+. -|-++-+...|.++
T Consensus 993 pnlie----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~ 1047 (1251)
T KOG0414|consen 993 PNLIE----PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDP 1047 (1251)
T ss_pred ccccc----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCC
Confidence 33211 13466777888899999999999999997766 333 37788888888876
No 284
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=78.74 E-value=33 Score=36.13 Aligned_cols=128 Identities=13% Similarity=0.185 Sum_probs=73.0
Q ss_pred cHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHh
Q 012813 297 LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGD 373 (456)
Q Consensus 297 i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~ 373 (456)
...++...+ ++...+..|+..|......-..-. ..++..++++..+. .++..|+..|-.+|.+ ++....+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-- 97 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQ----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-- 97 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGH----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence 344444444 467777778777776655433221 22667788887765 5677788888888886 4444444
Q ss_pred hCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHH-Hh--hcCCHHHHHHHHHHHH
Q 012813 374 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK-LA--QDGTARAKRKATGILE 444 (456)
Q Consensus 374 ~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~-Ll--~~~~~~~k~~A~~~L~ 444 (456)
+..|+++|++++ +......-.+|..|-..++. +.+..|.. +. .++++.+++++...|+
T Consensus 98 ---aDvL~QlL~tdd-~~E~~~v~~sL~~ll~~d~k---------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 ---ADVLVQLLQTDD-PVELDAVKNSLMSLLKQDPK---------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ---HHHHHHHTT----HHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred ---HHHHHHHHhccc-HHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 467889998653 66666677777777776652 22222333 22 3677778888877665
No 285
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=78.38 E-value=63 Score=35.51 Aligned_cols=207 Identities=14% Similarity=0.095 Sum_probs=114.7
Q ss_pred CCChhhHHHHHHHHHccccCcc--hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHH
Q 012813 223 GINPNLQEDVITTLLNLSIHDN--NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPL 300 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~L 300 (456)
..+++++.+....+..+-...+ +.....+ ..+|.++.+-.....+++.+....+.-++.... ..+.+.-.-+.+
T Consensus 448 de~~~V~lnli~~ls~~~~v~~v~g~~~~s~--slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~ 523 (759)
T KOG0211|consen 448 DEDPIVRLNLIDKLSLLEEVNDVIGISTVSN--SLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELL 523 (759)
T ss_pred hhhHHHHHhhHHHHHHHHhccCcccchhhhh--hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHH
Confidence 5678888888876655433332 2333332 368888887766677788777777766664332 122211111111
Q ss_pred HhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC-----chHHHHHHHHHHhhCCHHHHHHHHhhC
Q 012813 301 IDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-----VHVDELLAILAMLSTNHRAVEEIGDLG 375 (456)
Q Consensus 301 v~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~-----~~~~~a~~~L~~L~~~~~~~~~i~~~g 375 (456)
..-+.+.-..+++.|+..|..++..-. ..-...-.++.++....++ ...-.++..|..+.+.+-..+.+
T Consensus 524 ~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~L---- 597 (759)
T KOG0211|consen 524 RTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDL---- 597 (759)
T ss_pred HhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHH----
Confidence 122222234567777777766654332 1112223556666655553 23344555566655554444433
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHH
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILER 445 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~ 445 (456)
++.+..+.... .+.++-+++..|..+-..-.. ... ...+.+.+..|.++.+.++|-.|..++..
T Consensus 598 -lp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~---~~~-~~~v~pll~~L~~d~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 598 -LPVFLDLVKDP-VANVRINVAKHLPKILKLLDE---SVR-DEEVLPLLETLSSDQELDVRYRAILAFGS 661 (759)
T ss_pred -hHHHHHhccCC-chhhhhhHHHHHHHHHhhcch---HHH-HHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 66777777644 488999999998887664322 223 23556677777766666666665555443
No 286
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.52 E-value=17 Score=30.52 Aligned_cols=72 Identities=8% Similarity=0.102 Sum_probs=56.3
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc---CCHHHHHHHHHHHHHHhc
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD---GTARAKRKATGILERLKR 448 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~---~~~~~k~~A~~~L~~l~~ 448 (456)
++..|-+-|+++ ++.++..|+.+|-.+..+........+....++..|.+++.. .++.+|+++..++.....
T Consensus 38 a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 466777778766 599999999999999998876555555444677778888865 366899999999998764
No 287
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.92 E-value=68 Score=34.97 Aligned_cols=165 Identities=15% Similarity=0.101 Sum_probs=102.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCc
Q 012813 258 LLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 337 (456)
Q Consensus 258 ~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~ 337 (456)
-|..+|.+.....+..|..-|.++...+.+. ...+|..|+.+.+.+.++++-.---|..-+..+.+-..+ -
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dv-----S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL----S 109 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDV-----SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL----S 109 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----e
Confidence 3778888887666666666565555544442 234788889888889999887766555555444333222 3
Q ss_pred HHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhh---hcCChhHHHHHHHHHHHHhccChhhHH
Q 012813 338 VSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR---ESTCDRNKENCIAILHTICLSDRTKWK 412 (456)
Q Consensus 338 v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~---~~~~~~~~~~A~~~L~~l~~~~~~~~~ 412 (456)
|..+-+-|.++ -++..|+.+|..+= --+ ..|.++..++ .+.++.+|..|+.++--|-.-+++...
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIR------vp~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIR------VPM----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcc------hhh----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 56677777776 34555666655431 111 1122222222 234588888888888888887776422
Q ss_pred HHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 413 AMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 413 ~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
..++.+-+|+.+.++.+.-.|..+...+|
T Consensus 180 ------qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 180 ------QLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred ------HHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 23356777787878878777777776554
No 288
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.45 E-value=1.1e+02 Score=35.94 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=135.9
Q ss_pred hHHHHHHHhc----CCchhHHHHHHHHHHHhhcC-chhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcc
Q 012813 165 HFLSLLKKMS----ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 239 (456)
Q Consensus 165 ~i~~Lv~~L~----~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L 239 (456)
.++.|+..|- +.-.-...|...|++.-..+ ...-..... ....-|+.-|. +....++|.++-+|..|
T Consensus 995 ~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n--eIl~eLL~~lt------~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen 995 YLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN--EILDELLVNLT------SKEWRVREASCLALADL 1066 (1702)
T ss_pred HHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH--HHHHHHHHhcc------chhHHHHHHHHHHHHHH
Confidence 4455666662 22222345666666544323 222222222 34555666666 33458999999999998
Q ss_pred ccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHH---HHHHHHhcc--CCc-c--chhhcccCccHHHHh--ccccCCh
Q 012813 240 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNA---AAALFTLSA--LDS-N--KEVIGKSGALKPLID--LLDEGHQ 309 (456)
Q Consensus 240 s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a---a~aL~~Ls~--~~~-~--~~~i~~~G~i~~Lv~--lL~~~~~ 309 (456)
-.+.+.-...-.-+..+..+.+.+.+=...+|++| +.+|..|+. .+. | +..-.-.-++|.|++ ++ +.-.
T Consensus 1067 l~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~ 1145 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVN 1145 (1702)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchH
Confidence 77765322222212344555555544445566655 455666653 111 1 111111234444443 23 3456
Q ss_pred hHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcC--C-----------chHHHHHHHHHH-hhCCHHHHHHH---H
Q 012813 310 SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD--G-----------VHVDELLAILAM-LSTNHRAVEEI---G 372 (456)
Q Consensus 310 ~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~--~-----------~~~~~a~~~L~~-L~~~~~~~~~i---~ 372 (456)
+++.-++.++.-|+.+......---...+|.|++.... + .....|+..++. .+.+..--+.+ +
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci 1225 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCI 1225 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHH
Confidence 78999999999998765432222223567777776653 2 111222222221 12221111111 1
Q ss_pred ---h----hCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHH
Q 012813 373 ---D----LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILER 445 (456)
Q Consensus 373 ---~----~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~ 445 (456)
+ ...+|.+.++++.+-+-.++--|+..+..|+.+-+...+... ...+..+.--+.+-++.+++.-+.+.-.
T Consensus 1226 ~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s--gKll~al~~g~~dRNesv~kafAsAmG~ 1303 (1702)
T KOG0915|consen 1226 NYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS--GKLLRALFPGAKDRNESVRKAFASAMGY 1303 (1702)
T ss_pred HhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch--hHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 1 125788888998765566777788887777764322111111 1122222223344455666655555555
Q ss_pred Hhcch
Q 012813 446 LKRTV 450 (456)
Q Consensus 446 l~~~~ 450 (456)
|.++.
T Consensus 1304 L~k~S 1308 (1702)
T KOG0915|consen 1304 LAKFS 1308 (1702)
T ss_pred HHhcC
Confidence 54443
No 289
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=76.07 E-value=56 Score=36.22 Aligned_cols=182 Identities=14% Similarity=0.099 Sum_probs=106.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcccc-CChhHHHHHHHHHHHhccCchhhHHHHh
Q 012813 256 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVR 334 (456)
Q Consensus 256 i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~v~ 334 (456)
-+.+-.-+.+.+..-|..|+..+................|.+..++..... .+..+...|+..|..++..-..-..=..
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 344445556677777888877766655433311222234555555555543 4777888888888888754322222223
Q ss_pred cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccCh-h-h
Q 012813 335 DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-T-K 410 (456)
Q Consensus 335 ~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~-~-~ 410 (456)
.++.|.+++-+.+. .+.+.++.++...+... .-.-.++.+..++++++ +..+..+...+-....... . .
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~kn-p~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKN-PQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHhhcCCcCc
Confidence 46788888888864 66777777766665410 01113455667777654 7777776666655444332 1 1
Q ss_pred HHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 411 WKAMREEESTHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 411 ~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
.+..+ .+.++.++....+.+..++..|..++.-+
T Consensus 408 ~~~t~--~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 408 EKETV--KTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred chhhH--HHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 12222 25666777777777778888877776644
No 290
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=75.70 E-value=2.2 Score=31.85 Aligned_cols=44 Identities=30% Similarity=0.609 Sum_probs=31.7
Q ss_pred ccccchhhccC----cccCC-CCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 77 KCPLSKELMRD----PVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 77 ~Cpi~~~~m~d----Pv~l~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
+||=|+.=|.. ||..- |.|.|--.||.+|+.. ...||..+++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 46666654421 23333 7889999999999997 678999998754
No 291
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=75.69 E-value=85 Score=30.83 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=102.8
Q ss_pred hhhhhhccccccccCCCChhhHHHHHHHHHcccc-Cc-chhHHHhcCCC-CHHHHHHHHhcC----C---------HHHH
Q 012813 208 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-HD-NNKKLVAETPM-VIPLLMDALRSG----T---------IETR 271 (456)
Q Consensus 208 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~-~~-~~~~~i~~~~~-~i~~Lv~lL~~~----~---------~~~~ 271 (456)
+..+-+.|+ +........++..|..+.. +. .....+...-+ ..+.+.+++... . +.+|
T Consensus 58 ~k~lyr~L~------~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 58 LKLLYRSLS------SSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHhC------cCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 444555566 3346677788888888877 44 24555554332 345666666321 1 1788
Q ss_pred HHHHHHHHHhccCCc--cch-hhcccCccHHHHhccccCChhHHHHHHHHHHH-hccCc----hhhHHHHhcCcHHHHHH
Q 012813 272 SNAAAALFTLSALDS--NKE-VIGKSGALKPLIDLLDEGHQSAMKDVASAIFN-LCITH----ENKARAVRDGGVSVILK 343 (456)
Q Consensus 272 ~~aa~aL~~Ls~~~~--~~~-~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~-L~~~~----~~~~~~v~~g~v~~Lv~ 343 (456)
.+....+..+....+ .+. .+...+.+..+.+-|..++.++....+.+|.. +..+. ..|..+.....+..|..
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 888887777665433 333 44566889999999999999999999999995 44443 35566667778888988
Q ss_pred HHcCC------chHHHHHHHHHHhhCCH
Q 012813 344 KIMDG------VHVDELLAILAMLSTNH 365 (456)
Q Consensus 344 lL~~~------~~~~~a~~~L~~L~~~~ 365 (456)
+.... .+.+.+-..|..+|.++
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 77632 56888999999999764
No 292
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.67 E-value=50 Score=35.71 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=72.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcccc-----------CChhHHHHHHHHHHHhccCch
Q 012813 259 LMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-----------GHQSAMKDVASAIFNLCITHE 327 (456)
Q Consensus 259 Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~-----------~~~~~~~~a~~aL~~L~~~~~ 327 (456)
++++|.+++-+++.-+......|+...+ +.-++.+|+. ++..-+..-..+|+..+..-.
T Consensus 322 vLrvLss~dldvr~Ktldi~ldLvssrN----------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp 391 (948)
T KOG1058|consen 322 VLRVLSSPDLDVRSKTLDIALDLVSSRN----------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP 391 (948)
T ss_pred HHHHcCcccccHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh
Confidence 4566667777777777777666665432 3334444432 123446667778887765432
Q ss_pred hhHHHHhcCcHHHHHHHHcCCch--HHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHh
Q 012813 328 NKARAVRDGGVSVILKKIMDGVH--VDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC 404 (456)
Q Consensus 328 ~~~~~v~~g~v~~Lv~lL~~~~~--~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~ 404 (456)
=+.+.+|+.|++.+.+... ....+..+..... .|.-|..+ +..|++-+..-.+.+.-+.|+|.+..-|
T Consensus 392 ----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 392 ----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred ----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 1334589999999987532 2222333322222 34444444 4555555543334566677777777666
Q ss_pred ccCh
Q 012813 405 LSDR 408 (456)
Q Consensus 405 ~~~~ 408 (456)
....
T Consensus 463 e~~~ 466 (948)
T KOG1058|consen 463 EGLS 466 (948)
T ss_pred hhhH
Confidence 6544
No 293
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=74.02 E-value=21 Score=30.26 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=55.8
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc------CCHHHHHHHHHHHHHHh
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD------GTARAKRKATGILERLK 447 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~------~~~~~k~~A~~~L~~l~ 447 (456)
++..|.+-+++. ++.++..|+.+|-.+..+.......-+....++..|++++.. .++.+|.+...++..-+
T Consensus 39 a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456677777765 499999999999999988776666666566888889999853 35689999999998765
No 294
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.95 E-value=1.9 Score=41.89 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=34.9
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccc
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVL 120 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l 120 (456)
.+.|..-.|-||.+-.++-+.+||||+.| |+.-... .+.||+||+..
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI 346 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI 346 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence 34566667999999999999999999988 4432222 34599998764
No 295
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=73.89 E-value=76 Score=29.43 Aligned_cols=136 Identities=15% Similarity=0.042 Sum_probs=79.4
Q ss_pred HHHHh-ccccCChhHHHHHHHHHHHhccCc-hhhHHHHhcCcHHHHHHHHcCCchH--HHHHHHHHHhhCCHHHHHHHHh
Q 012813 298 KPLID-LLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDGVHV--DELLAILAMLSTNHRAVEEIGD 373 (456)
Q Consensus 298 ~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~--~~a~~~L~~L~~~~~~~~~i~~ 373 (456)
+.|+. +-+..+++.....+.+|..++.+. .+... ++..|..+...+... .-+...+..+-...+.. +
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f-- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--F-- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--H--
Confidence 33443 444568889999999999999888 43333 344455555544332 24555555554432211 0
Q ss_pred hCcHHHHHHH--hh-----hcCC--hhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh-hcCCHHHHHHHHHHH
Q 012813 374 LGGVSCMLRI--IR-----ESTC--DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA-QDGTARAKRKATGIL 443 (456)
Q Consensus 374 ~g~i~~Lv~l--l~-----~~~~--~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll-~~~~~~~k~~A~~~L 443 (456)
+.+..++.. ++ .+.+ -...-.....+..+|...+++. ...+..|..++ +..++.++..|..+|
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g------~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG------VDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH------HHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 233433333 11 1111 1222233457888888877642 34557777788 788888999999999
Q ss_pred HHHhcc
Q 012813 444 ERLKRT 449 (456)
Q Consensus 444 ~~l~~~ 449 (456)
..+++.
T Consensus 147 ~~Lc~~ 152 (234)
T PF12530_consen 147 APLCEA 152 (234)
T ss_pred HHHHHH
Confidence 988854
No 296
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=73.42 E-value=61 Score=34.57 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=90.7
Q ss_pred ChhhHHHHHHHHHccccCcchhHHHhcC---CCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhccc--CccHH
Q 012813 225 NPNLQEDVITTLLNLSIHDNNKKLVAET---PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKS--GALKP 299 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~---~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~--G~i~~ 299 (456)
..+.+-.|+.+|+-+..+...-..+... ..++..++..+. +.+.-+.-++++|.|+-.+..++..+... -.+..
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~ 635 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDP 635 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh
Confidence 4566777888888777666543333321 123334444443 55777888899999998876666555432 12222
Q ss_pred HHhccccCChhHHHHHHHHHHHhccC--chhhHHHHhcCcHHHHHHHHcC---C----chHHHHHHHHHHhhCCHHHHHH
Q 012813 300 LIDLLDEGHQSAMKDVASAIFNLCIT--HENKARAVRDGGVSVILKKIMD---G----VHVDELLAILAMLSTNHRAVEE 370 (456)
Q Consensus 300 Lv~lL~~~~~~~~~~a~~aL~~L~~~--~~~~~~~v~~g~v~~Lv~lL~~---~----~~~~~a~~~L~~L~~~~~~~~~ 370 (456)
+++.=...+..+....+....|++.. ..+-+ .++.+.|..++.. + +..-.++.+|.+|+..+.....
T Consensus 636 ~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~ 711 (745)
T KOG0301|consen 636 VIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ 711 (745)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence 22222223344444444444454432 22211 4566666666552 1 2345578888899998887777
Q ss_pred HHhhCcHHHHHHHhhhc
Q 012813 371 IGDLGGVSCMLRIIRES 387 (456)
Q Consensus 371 i~~~g~i~~Lv~ll~~~ 387 (456)
+...-.+..+++-++..
T Consensus 712 ~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 712 LAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHHhcCHHHHHHHHHHh
Confidence 77666688888877764
No 297
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=73.13 E-value=3.3 Score=39.89 Aligned_cols=60 Identities=10% Similarity=0.234 Sum_probs=43.1
Q ss_pred CCCccccccchhhccCcccCC-CCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHH
Q 012813 72 CPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQW 138 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w 138 (456)
..+-+.||+|.+.|.-|+.=+ +||..|-+|=. .-...||+|+.++.. +.+.++.+.++.-
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCcccccccc---HHHHHHHHHHHhc
Confidence 455678999999999998765 79988777633 224579999999873 2445556655543
No 298
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=72.90 E-value=80 Score=29.27 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=76.9
Q ss_pred CCChhhHHHHHHHHHccccCc-chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHH
Q 012813 223 GINPNLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI 301 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv 301 (456)
..+++.+...+.+|-.++.++ .+... ++..|..+.+.+..+.+.-+.+.+..+-..++ +.. |.+..++
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~------v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f----~~L~~~L 80 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNVCVPP------VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF----PFLQPLL 80 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCccchhH------HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH----HHHHHHH
Confidence 457889999999999998887 43333 33446666666666665566666666654332 111 3333333
Q ss_pred hc-----c---ccC--ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHH-cCC--chHHHHHHHHHHhhC
Q 012813 302 DL-----L---DEG--HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKI-MDG--VHVDELLAILAMLST 363 (456)
Q Consensus 302 ~l-----L---~~~--~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL-~~~--~~~~~a~~~L~~L~~ 363 (456)
.. . .++ .-+..-..+.++..+|...+++. ...++.+...| .+. ..+..++.+|..||.
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 33 1 111 22334444567888887666521 23578888888 443 567778999999993
No 299
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.32 E-value=1.3e+02 Score=32.88 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=43.0
Q ss_pred CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccc
Q 012813 223 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK 288 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~ 288 (456)
+....+.-+|+.++.+|..... +.+. + ++..|--++.++...+|-.|.++|..++.....+
T Consensus 256 ~K~emV~~EaArai~~l~~~~~--r~l~--p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 256 HKSEMVIYEAARAIVSLPNTNS--RELA--P-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred chhHHHHHHHHHHHhhccccCH--hhcc--h-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence 3456788888888888754332 2222 1 5666777788888899999999999998765443
No 300
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=71.86 E-value=2.1 Score=31.86 Aligned_cols=34 Identities=9% Similarity=0.274 Sum_probs=25.6
Q ss_pred CccccccchhhccCcccCCCCccccHHHHHHHHhcC
Q 012813 74 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG 109 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~ 109 (456)
...+||+|++.+..-.++|+ .-.|..|++|+.++
T Consensus 38 ~~~~~P~t~~~l~~~~l~pn--~~Lk~~I~~~~~~~ 71 (73)
T PF04564_consen 38 NGGTDPFTRQPLSESDLIPN--RALKSAIEEWCAEN 71 (73)
T ss_dssp TSSB-TTT-SB-SGGGSEE---HHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCcCCcccceEC--HHHHHHHHHHHHHc
Confidence 47889999999988788887 56999999999863
No 301
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=71.75 E-value=32 Score=29.87 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=75.8
Q ss_pred CCHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHH
Q 012813 254 MVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARA 332 (456)
Q Consensus 254 ~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 332 (456)
..++.|.++|+.+ +..+|+.+..+|..|-..|..+.+....+.= .- .-...+.......+. ..+.+. .....
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-~~--~~~~~~~~~~~~~l~-~~~~~~---~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-SK--SSENSNDESTDISLP-MMGISP---SSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-cc--ccccccccchhhHHh-hccCCC---chHHH
Confidence 3567788888876 6899999999999999888776664332111 00 000111111111111 111211 12223
Q ss_pred HhcCcHHHHHHHHcCCch---HHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 012813 333 VRDGGVSVILKKIMDGVH---VDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTI 403 (456)
Q Consensus 333 v~~g~v~~Lv~lL~~~~~---~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l 403 (456)
.-..++..|++.|+++.. ...++.++..+... .... .+.. -.+|.++..+++.. +..++.-..-|..|
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv-~~L~-~viP~~l~~i~~~~-~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCV-PYLP-QVIPIFLRVIRTCP-DSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCch-hHHH-HHhHHHHHHHHhCC-HHHHHHHHHHHHHH
Confidence 333478889999988732 33455555555432 1111 1111 25788889998654 56777655555544
No 302
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=71.73 E-value=4.4 Score=32.32 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=29.1
Q ss_pred cCCCCCCccccccchhhccCcc--cCCCCccccHHHHH
Q 012813 68 ETVSCPEEFKCPLSKELMRDPV--ILASGQTFDRPYIQ 103 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~~~m~dPv--~l~~g~~~~r~~I~ 103 (456)
....+.++-.|++|++.+.+++ +-||||.|-..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4566888889999999998876 46999988777764
No 303
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.72 E-value=1.8e+02 Score=32.72 Aligned_cols=234 Identities=16% Similarity=0.165 Sum_probs=124.0
Q ss_pred CCchhhhhhccccccc--cCCCChhhHHHHHHHHHccc----cCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHH
Q 012813 205 HDAIPQLLSPLSESKC--ENGINPNLQEDVITTLLNLS----IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAAL 278 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~--~~~~~~~~~~~a~~~L~~Ls----~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL 278 (456)
.|.++.+++.|.+... .+..++.-.+-|+.++.+|+ .....+.++-.- .++.+...++++..-.|..||+.+
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f--lv~hVfP~f~s~~g~Lrarac~vl 486 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF--LVNHVFPEFQSPYGYLRARACWVL 486 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH--HHHHhhHhhcCchhHHHHHHHHHH
Confidence 3677888888874432 11234556677777777775 222222322211 233344455677778899999999
Q ss_pred HHhccCC-ccchhhcccCccHHHHhccc-cCChhHHHHHHHHHHHhccCchhhHHHHhc---CcHHHHHHHHcCCchHHH
Q 012813 279 FTLSALD-SNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVRD---GGVSVILKKIMDGVHVDE 353 (456)
Q Consensus 279 ~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~---g~v~~Lv~lL~~~~~~~~ 353 (456)
...+..+ .+...+ ..++....+.|. +.+..++-.|+-||..+-.+.+-...-++. +.++.|+.+... .-.+.
T Consensus 487 ~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne-~End~ 563 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE-VENDD 563 (1010)
T ss_pred HHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh-cchhH
Confidence 9998533 222222 234555566666 567789999999999988776544333333 233333333332 12223
Q ss_pred HHHHHHHhhC-CHHHHH----HHHhhCcHHHHHHHhhh--c---CChhHHHHHHHHHHHHhc------cChhhHHHHHHh
Q 012813 354 LLAILAMLST-NHRAVE----EIGDLGGVSCMLRIIRE--S---TCDRNKENCIAILHTICL------SDRTKWKAMREE 417 (456)
Q Consensus 354 a~~~L~~L~~-~~~~~~----~i~~~g~i~~Lv~ll~~--~---~~~~~~~~A~~~L~~l~~------~~~~~~~~~~~~ 417 (456)
-..++..+.. .++.-. .+.+ ......+++++. + .++.-+-.|.++|..+.. ..+.-.+.+ +
T Consensus 564 Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~l--e 640 (1010)
T KOG1991|consen 564 LTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQL--E 640 (1010)
T ss_pred HHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH--H
Confidence 3344444433 232221 2222 245667777774 1 123445556666665542 122221111 2
Q ss_pred hccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 418 ESTHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 418 ~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
....+++..++++.-.+.-+.+..++..+
T Consensus 641 ~~~l~vi~~iL~~~i~dfyeE~~ei~~~~ 669 (1010)
T KOG1991|consen 641 PIVLPVIGFILKNDITDFYEELLEIVSSL 669 (1010)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 34556666667766656666666655443
No 304
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=71.22 E-value=1.7 Score=31.04 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=24.0
Q ss_pred cccccchhhccCcccCCCCccccHHHHHHH
Q 012813 76 FKCPLSKELMRDPVILASGQTFDRPYIQRW 105 (456)
Q Consensus 76 f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~ 105 (456)
.+||+|++.+....++++ ...|..|++|
T Consensus 36 ~~cP~~~~~~~~~~l~~~--~~l~~~i~~~ 63 (63)
T smart00504 36 GTDPVTGQPLTHEDLIPN--LALKSAIQEW 63 (63)
T ss_pred CCCCCCcCCCChhhceeC--HHHHHHHHhC
Confidence 579999999987778887 6799999887
No 305
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.31 E-value=1.9e+02 Score=32.49 Aligned_cols=132 Identities=10% Similarity=0.073 Sum_probs=76.9
Q ss_pred CCHHHHHHHHh------cC--CHHHHHHHHHHHHHhccCC----ccchhhcccCccHHHHhccccCChhHHHHHHHHHHH
Q 012813 254 MVIPLLMDALR------SG--TIETRSNAAAALFTLSALD----SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 321 (456)
Q Consensus 254 ~~i~~Lv~lL~------~~--~~~~~~~aa~aL~~Ls~~~----~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~ 321 (456)
+.++.++++|. .. ++.-+..|..++.+|+..= ..+.. .+.=++..+...++++---.+..||+.+..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 46777888886 22 3556667777777776321 11221 122234444555666666788999999999
Q ss_pred hccCc-hhhHHHHhcCcHHHHHHHHc-CC--chHHHHHHHHHHhhCCHH-HHHHHHhh--CcHHHHHHHhhhcC
Q 012813 322 LCITH-ENKARAVRDGGVSVILKKIM-DG--VHVDELLAILAMLSTNHR-AVEEIGDL--GGVSCMLRIIREST 388 (456)
Q Consensus 322 L~~~~-~~~~~~v~~g~v~~Lv~lL~-~~--~~~~~a~~~L~~L~~~~~-~~~~i~~~--g~i~~Lv~ll~~~~ 388 (456)
+|.-+ .+...+.+ ++....+.|. +. .++..|+-+|..+.++.+ ....+..+ +.++.|+++++...
T Consensus 489 ~~~~df~d~~~l~~--ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLSE--ALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHhccCCChHHHHH--HHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 98432 22222222 3444455555 33 567777778888877644 33445443 45666777776543
No 306
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=70.19 E-value=29 Score=29.33 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=55.9
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHH---HHHHHHHHHHHHhc
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TAR---AKRKATGILERLKR 448 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~-~~~---~k~~A~~~L~~l~~ 448 (456)
++..|.+-|+++ ++.++..|+.+|-.+..+........+....++..|.+++.+. ... +++++..+|.....
T Consensus 43 a~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHG-NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 356677777765 5999999999999999988766666665567889999987654 433 89999999887653
No 307
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=69.76 E-value=11 Score=29.85 Aligned_cols=66 Identities=12% Similarity=0.201 Sum_probs=49.8
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHH
Q 012813 254 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 319 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL 319 (456)
..+..|+..+...+......+...|..|...+.....+.+.|++..|-++=..-++......-..+
T Consensus 30 ~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 30 LLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 355556777777777788888999999999998889999999999988776655665555444444
No 308
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.48 E-value=3.9 Score=42.64 Aligned_cols=37 Identities=30% Similarity=0.550 Sum_probs=30.0
Q ss_pred ccccccchhhc----cCcccCCCCccccHHHHHHHHhcCCCCCC
Q 012813 75 EFKCPLSKELM----RDPVILASGQTFDRPYIQRWLKAGNRTCP 114 (456)
Q Consensus 75 ~f~Cpi~~~~m----~dPv~l~~g~~~~r~~I~~~~~~~~~~~P 114 (456)
-++|+||...+ ..||.+-||||.||.|.+.-... +||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence 46899996655 46999999999999999987764 466
No 309
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.39 E-value=3.4 Score=40.49 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=34.7
Q ss_pred CCccccccchhhccCcc----cCC-CCccccHHHHHHHHhcC--CCCCCCCcccccC
Q 012813 73 PEEFKCPLSKELMRDPV----ILA-SGQTFDRPYIQRWLKAG--NRTCPRTQQVLSH 122 (456)
Q Consensus 73 p~~f~Cpi~~~~m~dPv----~l~-~g~~~~r~~I~~~~~~~--~~~~P~~~~~l~~ 122 (456)
|..-.|.||-+.. +-+ -+. |||+|.--|+++|+.-. +.+||.|+-.+..
T Consensus 2 pi~A~C~Ic~d~~-p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 2 PIMAECHICIDGR-PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred CccceeeEeccCC-ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 5667899995544 222 233 99999999999999843 3579999844433
No 310
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=69.24 E-value=85 Score=29.76 Aligned_cols=164 Identities=15% Similarity=0.158 Sum_probs=93.3
Q ss_pred ChhhHHHHHHHHHccccCcch--------hHHHhcCCCCHHHHHHHHhcCC----HHHHHHHHHHHHHhccCCccchhhc
Q 012813 225 NPNLQEDVITTLLNLSIHDNN--------KKLVAETPMVIPLLMDALRSGT----IETRSNAAAALFTLSALDSNKEVIG 292 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~--------~~~i~~~~~~i~~Lv~lL~~~~----~~~~~~aa~aL~~Ls~~~~~~~~i~ 292 (456)
++...+.++.+|..|+...++ +-.+.-- +.+|.++.-+.+++ ......+|..|..++....
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~l-a~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~------ 147 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLL-ALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG------ 147 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHH-HHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC------
Confidence 355667777777777554432 1111111 24566666666666 1444566677887773211
Q ss_pred ccCccHHHHhccccC----ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH
Q 012813 293 KSGALKPLIDLLDEG----HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHR 366 (456)
Q Consensus 293 ~~G~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~ 366 (456)
.+.+..+......+ ..+-...++..|+.-...+ .+...+-.|+++|.++ -.+..++.+|..+-..-+
T Consensus 148 -~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d 220 (262)
T PF14225_consen 148 -LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD 220 (262)
T ss_pred -CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc
Confidence 11223333333222 3344555555555432211 1123567788999876 678889999999988655
Q ss_pred HHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccC
Q 012813 367 AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 367 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 407 (456)
.+.. .....+..|++++++. .-..|..+|-++-..+
T Consensus 221 ~~~~-~~~dlispllrlL~t~----~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 221 MRSP-HGADLISPLLRLLQTD----LWMEALEVLDEIVTRS 256 (262)
T ss_pred CCCC-cchHHHHHHHHHhCCc----cHHHHHHHHHHHHhhc
Confidence 4433 3334689999999854 3456777777665544
No 311
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.93 E-value=4.4 Score=39.17 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=39.4
Q ss_pred cccCCCCccccHHHHHHHHhcCCCCCCCCccccc-----CCCCcccHHHHHHHHHH
Q 012813 88 PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS-----HTILTPNHLIREMISQW 138 (456)
Q Consensus 88 Pv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~-----~~~l~~n~~lk~~i~~w 138 (456)
|=++.|||++|..|+...+.++...|||+|.+.. ...+..|+.+-+.++..
T Consensus 22 p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 22 PRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 4455599999999999999876778999999842 13577788777777654
No 312
>PRK14707 hypothetical protein; Provisional
Probab=68.57 E-value=3e+02 Score=34.08 Aligned_cols=266 Identities=15% Similarity=0.121 Sum_probs=135.9
Q ss_pred HHHHHHHhcCC--chhHHHHHHHHH-HHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 166 FLSLLKKMSAT--LPDQTEAAKELR-LLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 166 i~~Lv~~L~~~--~~~~~~a~~~L~-~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
+..++.-+|+- ...-+.++..|. .++. .+..+..+- .-+|..++.-+++.. +++..+..+...-..++.+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~~--~q~ia~~lNa~sKWp----~~~~c~~aa~~la~~l~~~ 237 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAMD--AQGVATVLNALCKWP----DTPDCGNAVSALAERLADE 237 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhcccc--hHHHHHHHHHHhcCC----CChhHHHHHHHHHHHHcCc
Confidence 34555666542 223334555554 4444 445555553 356777788887653 2455544444433445555
Q ss_pred cchhHHHhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHH-HhccCCccchhhcccCccHHHHhcccc-CChhHHHHHHHHH
Q 012813 243 DNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALF-TLSALDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAI 319 (456)
Q Consensus 243 ~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~aL~-~Ls~~~~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~aL 319 (456)
+.-+..+ ...++ -..+.-|.. ++...-.+++.+|. .|+.....+..+. .--+.-.++-|++ .+..+...|+..|
T Consensus 238 ~~l~~~~-~~q~v-a~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~-~q~vanalNalSKwpd~~vc~~Aa~~l 314 (2710)
T PRK14707 238 SRLRNEL-KPQEL-GNALNALSKWADTPVCAAAASALAERLVDDPGLRKALD-PINVTQALNALSKWADLPVCAEAAIAL 314 (2710)
T ss_pred HHHHHhC-ChHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC-HHHHHHHHhhhhcCCCchHHHHHHHHH
Confidence 4333333 33333 334444443 34445555555554 4443333333332 2233344444443 4555555554444
Q ss_pred H-HhccCchhhHHHHhcCcHHHHHHHHc-CC---chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHH
Q 012813 320 F-NLCITHENKARAVRDGGVSVILKKIM-DG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKE 394 (456)
Q Consensus 320 ~-~L~~~~~~~~~~v~~g~v~~Lv~lL~-~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 394 (456)
. .|..+.+-+.. .+.-.+...+..|+ .+ .+...|..+-..|+.+++-++.+--. ++..++.-+..-.+.....
T Consensus 315 a~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~ 392 (2710)
T PRK14707 315 AERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCA 392 (2710)
T ss_pred HHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHH
Confidence 4 55555544433 33334555555554 34 45666666667788888888777544 4666666666533344455
Q ss_pred HHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012813 395 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 444 (456)
Q Consensus 395 ~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~ 444 (456)
.|+..|..=-..+++.. ..+..-|+-..|-.|..=.+..+.+.|+..|.
T Consensus 393 ~aa~~LA~~l~~d~~l~-~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 393 AAASALAEHVVDDLELR-KGLDPQGVSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred HHHHHHHHHhccChhhh-hhcchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 55555553333444443 33333356566666666566667777666654
No 313
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.40 E-value=1.2 Score=41.71 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=32.2
Q ss_pred ccccccchhhccCcccCCCCccc-cHHHHHHHHhcCC--CCCCCCcccc
Q 012813 75 EFKCPLSKELMRDPVILASGQTF-DRPYIQRWLKAGN--RTCPRTQQVL 120 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~-~r~~I~~~~~~~~--~~~P~~~~~l 120 (456)
+.+|-||++.-+|=|+|+|||.. |-.| |. ..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence 78899999999999999999977 7666 32 3599998753
No 314
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=67.19 E-value=12 Score=32.77 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=63.9
Q ss_pred chhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcC-CCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccC
Q 012813 207 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET-PMVIPLLMDALRSG-TIETRSNAAAALFTLSAL 284 (456)
Q Consensus 207 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~ 284 (456)
.+..+..+|+ +.++..+-.++..+.......+ ...+.+. +..+..|+.+|+.. +..+.+.++.+|..|...
T Consensus 26 l~~ri~~LL~------s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 26 LVTRINSLLQ------SKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHhC------CCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3445566666 4456666666666655543322 2333222 23677888999876 466777887777666432
Q ss_pred ----Cccchhhcc---cCccHHHHhccccCChhHHHHHHHHHHHhccC
Q 012813 285 ----DSNKEVIGK---SGALKPLIDLLDEGHQSAMKDVASAIFNLCIT 325 (456)
Q Consensus 285 ----~~~~~~i~~---~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 325 (456)
++....+.. .+.+..+++++++ ......++.+|..|-..
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 233333332 3566677777664 45667777777776543
No 315
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=66.98 E-value=38 Score=28.39 Aligned_cols=72 Identities=8% Similarity=0.103 Sum_probs=55.1
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHH-HHHHHHHHHHHHhc
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TAR-AKRKATGILERLKR 448 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~-~~~-~k~~A~~~L~~l~~ 448 (456)
++..|-+-|+++ ++.++..|+.+|-.+..+........+....++..|.+++... +.. +++++..++..-..
T Consensus 38 a~r~l~krl~~~-n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNK-NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 355677777765 4999999999999999987666656665668899999987654 333 99999999887653
No 316
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=65.04 E-value=2.5 Score=40.27 Aligned_cols=27 Identities=19% Similarity=0.549 Sum_probs=19.8
Q ss_pred ccccccchhhcc--CcccCC-CCccccHHH
Q 012813 75 EFKCPLSKELMR--DPVILA-SGQTFDRPY 101 (456)
Q Consensus 75 ~f~Cpi~~~~m~--dPv~l~-~g~~~~r~~ 101 (456)
.|.||+|++.|. +.-..+ +||+||..-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 489999999995 333333 789998765
No 317
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=64.77 E-value=1.5e+02 Score=30.36 Aligned_cols=181 Identities=14% Similarity=0.099 Sum_probs=96.2
Q ss_pred HHHHHHHhcCC--chhHHHHHHHHHHHhhc-CchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 166 FLSLLKKMSAT--LPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 166 i~~Lv~~L~~~--~~~~~~a~~~L~~L~~~-~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
+..++..++++ .+.+..|+..|..+... +-...+.... ..+..++..|+. +.+...+..|+++|..+..+
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d-----~~~~~~k~laLrvL~~ml~~ 360 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSD-----SEDEIIKKLALRVLREMLTN 360 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHcc-----chhhHHHHHHHHHHHHHHHh
Confidence 44455555554 45677888877755543 3344444333 366677788874 35678889999999998766
Q ss_pred cchhHHHhcCC-CCHHHHHHHHhcCCHHHHHHHHH-HHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHH
Q 012813 243 DNNKKLVAETP-MVIPLLMDALRSGTIETRSNAAA-ALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 320 (456)
Q Consensus 243 ~~~~~~i~~~~-~~i~~Lv~lL~~~~~~~~~~aa~-aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~ 320 (456)
.. ..+.... -++..+++.-++...++...|.. ++.-++....-+. |..+..++...+......++..+-
T Consensus 361 Q~--~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 361 QP--ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLT 431 (516)
T ss_pred ch--HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHH
Confidence 54 2222211 12333333334455555555544 4455555443322 222333343344444455555566
Q ss_pred HhccCchhhHHH-HhcCcHHHHHHHHcCC--chHHHHHHHHHHhh
Q 012813 321 NLCITHENKARA-VRDGGVSVILKKIMDG--VHVDELLAILAMLS 362 (456)
Q Consensus 321 ~L~~~~~~~~~~-v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~ 362 (456)
.|+..-..-... +=....|.+++.-.+. .++..|+.+|..+.
T Consensus 432 kl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 432 KLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 565432211111 1125678888777654 55666666665554
No 318
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=64.68 E-value=66 Score=35.68 Aligned_cols=174 Identities=17% Similarity=0.086 Sum_probs=101.6
Q ss_pred cCCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc-hhHHHhcC
Q 012813 174 SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAET 252 (456)
Q Consensus 174 ~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~ 252 (456)
++...++.+|+..+....... . ........|.+-.++..... +.+..+...|+..|..++..-. .-.....
T Consensus 264 s~~WK~R~Eale~l~~~l~e~-~-~~~~~~~~~ll~~~~ki~~k-----DaN~~v~~~aa~~l~~ia~~lr~~~~~~~~- 335 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEA-K-KEIVKGYTGLLGILLKIRLK-----DANINVVMLAAQILELIAKKLRPLFRKYAK- 335 (815)
T ss_pred ccchHHHHHHHHHHHHHHhcc-c-cccccCcchHHHHHHHHhcc-----CcchhHHHHHHHHHHHHHHhcchhhHHHHH-
Confidence 455788899999888777632 2 11111112333333333332 4466777777777777754332 1222222
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCch--hhH
Q 012813 253 PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE--NKA 330 (456)
Q Consensus 253 ~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--~~~ 330 (456)
++.|.|++-+......++.....++-..+. .....-.++.+...+++++++.+..+...+.......+ ...
T Consensus 336 -~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 336 -NVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred -hhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 367888888887777777777666655443 11123456788889999999998887666655443222 122
Q ss_pred HHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhh
Q 012813 331 RAVRDGGVSVILKKIMDG--VHVDELLAILAMLS 362 (456)
Q Consensus 331 ~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~ 362 (456)
.-.-.+++|.++....|. +++..|..++..+-
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 222235677777777654 66777776666654
No 319
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=64.65 E-value=1.5e+02 Score=29.13 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=105.2
Q ss_pred HHHHHHHhcCC-chhHHHHHHHHHHHhh-cCchh-hhhhhccCCc-hhhhhhccccccccCCC-----C--hhhHHHHHH
Q 012813 166 FLSLLKKMSAT-LPDQTEAAKELRLLTK-RMPSF-RALFGESHDA-IPQLLSPLSESKCENGI-----N--PNLQEDVIT 234 (456)
Q Consensus 166 i~~Lv~~L~~~-~~~~~~a~~~L~~L~~-~~~~~-r~~i~~~~g~-i~~Lv~lL~~~~~~~~~-----~--~~~~~~a~~ 234 (456)
++.+-+.|+++ ......+++.|..++. .+... ++.+.. -+. .+.|..++.....+... . +.++...+.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~-fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRS-FDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 55566666544 3455577777777777 44333 333333 222 33444444311100000 0 378888888
Q ss_pred HHHccccCc--chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHH-hccCC----ccchhhcccCccHHHHhccccC
Q 012813 235 TLLNLSIHD--NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFT-LSALD----SNKEVIGKSGALKPLIDLLDEG 307 (456)
Q Consensus 235 ~L~~Ls~~~--~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~-Ls~~~----~~~~~i~~~G~i~~Lv~lL~~~ 307 (456)
.+..+-... ..+..+....+.+..+.+-|...+.++......+|.. +..+. ..|..+.....+..|+.+....
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 766654333 3688888877788889999988889999988888875 33332 3466677788999999977766
Q ss_pred Ch----hHHHHHHHHHHHhccCch
Q 012813 308 HQ----SAMKDVASAIFNLCITHE 327 (456)
Q Consensus 308 ~~----~~~~~a~~aL~~L~~~~~ 327 (456)
++ .+.+.+-..|..+|.++.
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCC
Confidence 66 888889999999998775
No 320
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=64.32 E-value=1.2e+02 Score=28.03 Aligned_cols=128 Identities=15% Similarity=0.100 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcC-----C---------------chHHHHHHHHHHhhCCHHH
Q 012813 308 HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD-----G---------------VHVDELLAILAMLSTNHRA 367 (456)
Q Consensus 308 ~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~-----~---------------~~~~~a~~~L~~L~~~~~~ 367 (456)
+..-...++..+..|...+++.......+.++.+.+.|.. + .+...=...|..|+.++.|
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 3556777888889998888877777777888888877741 1 1222335778899999999
Q ss_pred HHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 368 VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 368 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
.+.+.+.|....+.++....+ . ..-..-+|.+|=....+. .-..|.+.+.++++.+|-.|...|+.+-
T Consensus 157 l~lLe~~~if~~l~~i~~~~~-~--~~l~klil~~LDY~~~~~---------~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSS-R--DDLLKLILSSLDYSVDGH---------PRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCc-h--HHHHHHHHhhCCCCCccH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 999999999999999998642 1 222222444442222122 1235667888999999999999998663
No 321
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=63.33 E-value=91 Score=32.40 Aligned_cols=113 Identities=15% Similarity=0.191 Sum_probs=70.3
Q ss_pred cCcHHHHHHHHcCCchHHHHHHHHHHhhCC----HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccCh--
Q 012813 335 DGGVSVILKKIMDGVHVDELLAILAMLSTN----HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-- 408 (456)
Q Consensus 335 ~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~----~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~-- 408 (456)
.+.|+.+++.+..+.+.+--+.++. +.. ....+++.+.+.|+.|+.+|....++..+.+|..+|..|..-+.
T Consensus 20 ~~~v~~llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~ 97 (475)
T PF04499_consen 20 PNFVDNLLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNA 97 (475)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 3677777777766655555554444 222 24456667889999999999866668899999999888854322
Q ss_pred ----------hhHHHHHHhhccHHHHHHHhh--cCCHHHHHHHHHHHHHHhcc
Q 012813 409 ----------TKWKAMREEESTHGTISKLAQ--DGTARAKRKATGILERLKRT 449 (456)
Q Consensus 409 ----------~~~~~~~~~~g~~~~L~~Ll~--~~~~~~k~~A~~~L~~l~~~ 449 (456)
+..-..+.....+..|+..+- .+...+.-...-++..+++-
T Consensus 98 ~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 98 PQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 222233334456666666543 34444555555566666554
No 322
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.30 E-value=49 Score=35.51 Aligned_cols=110 Identities=13% Similarity=0.134 Sum_probs=66.6
Q ss_pred HHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhh--CcHHHHHHHhhh---cCChhHHHHHHHHHHHHhccChhh
Q 012813 338 VSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRE---STCDRNKENCIAILHTICLSDRTK 410 (456)
Q Consensus 338 v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~--g~i~~Lv~ll~~---~~~~~~~~~A~~~L~~l~~~~~~~ 410 (456)
...++++|.+. .++-..+.+.+|+..+-....++.++ .-+..|+.++.. +.+|-++..|+.++.-++..+...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 35677778766 44555667777777642222233332 124445444432 345899999999999998765421
Q ss_pred HHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHH-Hhcch
Q 012813 411 WKAMREEESTHGTISKLAQDGTARAKRKATGILER-LKRTV 450 (456)
Q Consensus 411 ~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~-l~~~~ 450 (456)
......++.....=+|+.+.-++++|..++.- |-+|+
T Consensus 381 ---~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 ---VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred ---cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 11112344555566778888899999988874 34554
No 323
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=63.11 E-value=64 Score=35.27 Aligned_cols=193 Identities=17% Similarity=0.107 Sum_probs=115.5
Q ss_pred HHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHH--HHHHHH
Q 012813 186 ELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIP--LLMDAL 263 (456)
Q Consensus 186 ~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~--~Lv~lL 263 (456)
.|.+.+..++.+.+.+.+ .|++..+...+.... ..+.+..++..+.+++...+++....... .+. .+-.++
T Consensus 494 ~l~~~t~~~~~~C~~~l~-~~g~~~~~~~l~~f~-----~~~~~~~il~~l~n~~~~~~~~~~~~~~~-~~~~~~f~~~~ 566 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLD-NGGMKLLFKCLESFD-----NEELHRKILGLLGNLAEVLELRELLMIFE-FIDFSVFKVLL 566 (699)
T ss_pred HHHhhhcCCHHHHHHHHh-cccHHHHHHHHhhcc-----chhHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHH
Confidence 677888888888888888 899999999998652 57889999999999988776544443322 111 222344
Q ss_pred hcCCH-HHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHH-H
Q 012813 264 RSGTI-ETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSV-I 341 (456)
Q Consensus 264 ~~~~~-~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~-L 341 (456)
...+. +.-..+++.|..+....+. -...+. ...+.+.-..++... .....++.....+.+ +
T Consensus 567 ~~w~~~ersY~~~siLa~ll~~~~~---~~~~~~-----------r~~~~~~l~e~i~~~---~~~~~~~~~~~~f~~~~ 629 (699)
T KOG3665|consen 567 NKWDSIERSYNAASILALLLSDSEK---TTECVF-----------RNSVNELLVEAISRW---LTSEIRVINDRSFFPRI 629 (699)
T ss_pred hhcchhhHHHHHHHHHHHHHhCCCc---Cccccc-----------hHHHHHHHHHHhhcc---CccceeehhhhhcchhH
Confidence 44444 7777888888877765443 111111 111222222222222 222222322222233 4
Q ss_pred HHHHc---CCchHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHH
Q 012813 342 LKKIM---DGVHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 402 (456)
Q Consensus 342 v~lL~---~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 402 (456)
.+++. .+..+--|++++.+++.. ++....+.+.|+++.+............++.+...+-+
T Consensus 630 ~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 630 LRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred HHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 44444 346677788888888874 67777788888888877655432234455555555443
No 324
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=62.92 E-value=2.1e+02 Score=30.67 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=42.4
Q ss_pred CHHHHHHHHh----cCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccC---ChhHHHHHHHHHHHhccCch
Q 012813 255 VIPLLMDALR----SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG---HQSAMKDVASAIFNLCITHE 327 (456)
Q Consensus 255 ~i~~Lv~lL~----~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~---~~~~~~~a~~aL~~L~~~~~ 327 (456)
+++.|...|. .++.+-+..+..+|.|+-. ...++.|...+... +..++..|+++|..+.....
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 4555555554 3455667777777777742 33566777776655 45667777777776643332
Q ss_pred hhHHHHhcCcHHHHHHHHcC
Q 012813 328 NKARAVRDGGVSVILKKIMD 347 (456)
Q Consensus 328 ~~~~~v~~g~v~~Lv~lL~~ 347 (456)
.. +.+.|+.++.+
T Consensus 557 ~~-------v~~~l~~I~~n 569 (618)
T PF01347_consen 557 EK-------VREILLPIFMN 569 (618)
T ss_dssp HH-------HHHHHHHHHH-
T ss_pred HH-------HHHHHHHHhcC
Confidence 11 33555666554
No 325
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.68 E-value=1.1e+02 Score=32.23 Aligned_cols=63 Identities=10% Similarity=0.188 Sum_probs=42.6
Q ss_pred ccCccHHHHhc-cccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhC
Q 012813 293 KSGALKPLIDL-LDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLST 363 (456)
Q Consensus 293 ~~G~i~~Lv~l-L~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~ 363 (456)
+.|+|..|+.. +++++.++++.|..+|.-+|..+. ..++..+++|.+. .++...+-+|..-|.
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiaca 615 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACA 615 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhc
Confidence 46788888887 667789999999999998887653 3556666777643 333334444444443
No 326
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=62.63 E-value=5 Score=33.52 Aligned_cols=44 Identities=18% Similarity=0.422 Sum_probs=33.8
Q ss_pred ccccccchhhccC--cc-cCCCCcc------ccHHHHHHHHhcCCCCCCCCccc
Q 012813 75 EFKCPLSKELMRD--PV-ILASGQT------FDRPYIQRWLKAGNRTCPRTQQV 119 (456)
Q Consensus 75 ~f~Cpi~~~~m~d--Pv-~l~~g~~------~~r~~I~~~~~~~~~~~P~~~~~ 119 (456)
..-|.||.+-..+ =| .+++|.+ |+..|+++|-.+ ...||+.|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccce
Confidence 4569999988877 44 4667654 789999999754 5789999865
No 327
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=62.54 E-value=2.5e+02 Score=31.05 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=108.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccCCc-cchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHH
Q 012813 255 VIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAV 333 (456)
Q Consensus 255 ~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v 333 (456)
..|.++..+++..+.++.+....+..+-...+ .-........++.++.+-....-+++....+.+..++.... ..+.
T Consensus 438 llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~ 515 (759)
T KOG0211|consen 438 LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFF 515 (759)
T ss_pred cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHh
Confidence 56777777888788888888776655443322 22233445567777777766566777777888877776544 2232
Q ss_pred hcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhH
Q 012813 334 RDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKW 411 (456)
Q Consensus 334 ~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~ 411 (456)
.....+.+..-+.+. .+.+.|+..|..++..-. .++-.. -.++.++.+...+ +-..|...+..+..|+.-..
T Consensus 516 ~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~-~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g--- 589 (759)
T KOG0211|consen 516 DEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARL-EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLG--- 589 (759)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHH-HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhc---
Confidence 222223333333332 567777777776664211 122222 1355555444432 13344444444444443221
Q ss_pred HHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 412 KAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 412 ~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
+.+.. ..+++.+..+..+..+.+|-+++..|.-+.+.
T Consensus 590 ~ei~~-~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 590 QEITC-EDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred cHHHH-HHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 23443 37789999999999999999999988876543
No 328
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=61.98 E-value=66 Score=35.20 Aligned_cols=197 Identities=15% Similarity=0.095 Sum_probs=114.9
Q ss_pred HHHccccCc-chhHHHhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCccchhhcccCcc--HHHHhccccC-Ch
Q 012813 235 TLLNLSIHD-NNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGAL--KPLIDLLDEG-HQ 309 (456)
Q Consensus 235 ~L~~Ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i--~~Lv~lL~~~-~~ 309 (456)
+|.+.+... ++...+.+.+ ++..+.+.++.- ..+.+..+.+.+.+++...+++......--+ ..+-.++..- +.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~-g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNG-GMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcc-cHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 444555444 4677777765 678788888865 5788999999999998766554433221111 1222233333 33
Q ss_pred hHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhC-CHHHHHHHHhhCcHHH-HHHHhhhc
Q 012813 310 SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLST-NHRAVEEIGDLGGVSC-MLRIIRES 387 (456)
Q Consensus 310 ~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~-Lv~ll~~~ 387 (456)
+..-.|+..|..+..+.+. .... ...+.+...+..... .+.....+.....+.. +..+++.+
T Consensus 573 ersY~~~siLa~ll~~~~~---~~~~-------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEK---TTEC-------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred hHHHHHHHHHHHHHhCCCc---Cccc-------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 6667777777777665543 1111 223333333333332 1111111111112222 55566655
Q ss_pred CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh-hcCCHHHHHHHHHHHHHHhcc
Q 012813 388 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA-QDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 388 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll-~~~~~~~k~~A~~~L~~l~~~ 449 (456)
..+..+-.|++++.++....+.. ...+.+.++...+..+- ......+++.+..++.++..+
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 698 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEY-CKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCENH 698 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhh-hhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccccC
Confidence 56788999999999999998875 44444568888888763 333556788777777665543
No 329
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=61.20 E-value=1.3e+02 Score=31.75 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=59.1
Q ss_pred CccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC---CHHHHH
Q 012813 295 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST---NHRAVE 369 (456)
Q Consensus 295 G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~---~~~~~~ 369 (456)
|.+..++.-+.+.+..++..++..|.-++.+-..-...+..|.+..|.+-+.+. .++..|+.+|..+-. +++++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~- 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR- 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH-
Confidence 455556666667777888888888887766544444445556666666666553 566777777766543 33333
Q ss_pred HHHhhCcHHHHHHHhhhcCChhHHHHH
Q 012813 370 EIGDLGGVSCMLRIIRESTCDRNKENC 396 (456)
Q Consensus 370 ~i~~~g~i~~Lv~ll~~~~~~~~~~~A 396 (456)
.+..|+.+++++.+..++..|
T Consensus 170 ------~~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 170 ------IVNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred ------HHHHHHHHHhcCcHHHHHHHH
Confidence 123567777776556666544
No 330
>COG5634 Uncharacterized conserved protein [Function unknown]
Probab=60.67 E-value=12 Score=32.61 Aligned_cols=68 Identities=22% Similarity=0.342 Sum_probs=51.6
Q ss_pred CCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHcC
Q 012813 72 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQG 143 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~~ 143 (456)
+-.+|+.|||.++..=|.=++. +.+-| .-.|+.. .-.+|.-..|+..+.--|+..|...|+.+.....
T Consensus 56 ~d~nft~plt~~l~ql~~gl~~-q~~~~--~~~~~~~-~lldpr~MkPlPy~~~Gp~nDlNd~ie~yl~~a~ 123 (223)
T COG5634 56 ADLNFTDPLTEKLGQLPYGLQT-QDFPR--LDYWQDR-SLLDPRRMKPLPYADEGPRNDLNDIIEEYLSIAT 123 (223)
T ss_pred eecccCchhHHHHhcCCcCccc-Cccch--hHHhccc-cccCHhHcCCCCcCCCCCcccHHHHHHHHHHHhc
Confidence 5668999999999998877763 13333 3345554 5678988899988877899999999999987653
No 331
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=60.14 E-value=69 Score=27.17 Aligned_cols=73 Identities=8% Similarity=0.148 Sum_probs=53.7
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHH-HHHHhhc-C--CHHHHHHHHHHHHHHhc
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT-ISKLAQD-G--TARAKRKATGILERLKR 448 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~-L~~Ll~~-~--~~~~k~~A~~~L~~l~~ 448 (456)
++..|-+-|..+.++.++..|+.+|-.+..+.......-+..-.++.. |.+++.. . ...+|.+...+++..+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 355666666544458889999999999998887666555555688886 8888753 2 35799999999987763
No 332
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.77 E-value=57 Score=31.50 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=79.6
Q ss_pred cHHHHhccccCChhHHHHHHHHHHHhccCch-hhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHH
Q 012813 297 LKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIG 372 (456)
Q Consensus 297 i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~ 372 (456)
+...+..|.+.+=.....++..|..|+..+. ....+.. .++-.+++-+.+. .+...|+.++..+.+. ......
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3444556666666677778888888877553 2222221 3566666767765 5666678888777664 222222
Q ss_pred hhCcHHHHH-HHhhhc--CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHH
Q 012813 373 DLGGVSCML-RIIRES--TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILER 445 (456)
Q Consensus 373 ~~g~i~~Lv-~ll~~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~ 445 (456)
-...+| .++..+ ++.-+++.|-.+|..+..+-... .+++.|+..+++.+++++.+++...-+
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--------~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--------KLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--------HHHHHHHHHHhhhchhhhhhhhccccc
Confidence 122333 333332 22457888999998887754321 233455556777888888888765543
No 333
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=59.11 E-value=8.5 Score=33.92 Aligned_cols=38 Identities=18% Similarity=0.540 Sum_probs=29.3
Q ss_pred ccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
-+.||.||.+|-|-+ |---+.+|..|+.. ||.+.+...
T Consensus 87 IYICPFTGKVF~DNt-----~~nPQDAIYDWvSk----CPeN~ER~~ 124 (238)
T PF10915_consen 87 IYICPFTGKVFGDNT-----HPNPQDAIYDWVSK----CPENTERQG 124 (238)
T ss_pred EEEcCCcCccccCCC-----CCChHHHHHHHHhh----CCccchhcc
Confidence 379999999999853 22357899999986 898866543
No 334
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.04 E-value=45 Score=35.87 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=73.9
Q ss_pred cCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcC--CchHHHHHHHHHHhhCCHHHHHHH
Q 012813 294 SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTNHRAVEEI 371 (456)
Q Consensus 294 ~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~--~~~~~~a~~~L~~L~~~~~~~~~i 371 (456)
.|.+..|++-..+.+..++..++..|.-|+.+......-+-.+....|..-+.+ +.++-.|+.+|..+=.++..
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d---- 159 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD---- 159 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----
Confidence 466777777778888999999999999998855545555555666666666655 47888899998888653210
Q ss_pred HhhCcHHHHHHHhhhcCChhHHHHHHHHHH
Q 012813 372 GDLGGVSCMLRIIRESTCDRNKENCIAILH 401 (456)
Q Consensus 372 ~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~ 401 (456)
-+..++..++.+++++.++.++..|+..+.
T Consensus 160 ee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 160 EECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 022356778899998877888887655443
No 335
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=58.96 E-value=19 Score=28.14 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCch
Q 012813 257 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE 327 (456)
Q Consensus 257 ~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 327 (456)
...+..|.++.+.+|..+...|..|....+ ...+-..+++..+...|+++++-+--+|...|..|+....
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 345566778888899999999999987666 2222235788888889999899899999999999986554
No 336
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=58.48 E-value=1.6e+02 Score=31.38 Aligned_cols=206 Identities=13% Similarity=0.123 Sum_probs=99.7
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcch----hHHHh--cCCCCHHHHHHHHhcCCHHHHHHHHHHH
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN----KKLVA--ETPMVIPLLMDALRSGTIETRSNAAAAL 278 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~--~~~~~i~~Lv~lL~~~~~~~~~~aa~aL 278 (456)
...+-.|+++|+. -+.+..+....-+.. .. ... ...+. ..+.++..+.+.++++....... +.++
T Consensus 310 ~~~f~~lv~~lR~------~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea-~~~~ 380 (574)
T smart00638 310 AAKFLRLVRLLRT------LSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEA-AQLL 380 (574)
T ss_pred HHHHHHHHHHHHh------CCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHH-HHHH
Confidence 3456667777773 244444544444433 11 111 22222 23345666777777764322222 2222
Q ss_pred HHhc-cCCccchhhcccCccHHHHhccccC----ChhHHHHHHHHHHHhc----cCchhhHHHHhcCcHHHHHHHHcCC-
Q 012813 279 FTLS-ALDSNKEVIGKSGALKPLIDLLDEG----HQSAMKDVASAIFNLC----ITHENKARAVRDGGVSVILKKIMDG- 348 (456)
Q Consensus 279 ~~Ls-~~~~~~~~i~~~G~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~----~~~~~~~~~v~~g~v~~Lv~lL~~~- 348 (456)
..+. ..... ....+..+..+++++ .+.+...|+-++++|. ...+.+...+....++.|.+.|...
T Consensus 381 ~~~~~~~~~P-----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 381 AVLPHTARYP-----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHhhhcC-----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 2221 11111 123456667777653 4455666666666554 3333322222233566666655431
Q ss_pred -----chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhh-h-cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccH
Q 012813 349 -----VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR-E-STCDRNKENCIAILHTICLSDRTKWKAMREEESTH 421 (456)
Q Consensus 349 -----~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~-~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~ 421 (456)
.-+...+.+|.|+... ..+..|..++. . ..+..+|..|+.+|..++...+... .
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v---------~ 516 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV---------Q 516 (574)
T ss_pred hcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH---------H
Confidence 1122245555554321 12444454454 1 2246789999999999887665432 2
Q ss_pred HHHHHHhhcC--CHHHHHHHHHHH
Q 012813 422 GTISKLAQDG--TARAKRKATGIL 443 (456)
Q Consensus 422 ~~L~~Ll~~~--~~~~k~~A~~~L 443 (456)
+.|..+..+. ++.+|-.|..+|
T Consensus 517 ~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 517 EVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHH
Confidence 4455555443 445665555544
No 337
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=58.08 E-value=21 Score=28.71 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcC
Q 012813 350 HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIREST 388 (456)
Q Consensus 350 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~ 388 (456)
-....+..|..|+..|+--..+++.|+++.|+.+|.+.+
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN 100 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHEN 100 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCC
Confidence 345577888899999998899999999999999998754
No 338
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=57.68 E-value=43 Score=27.90 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=64.9
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-c--------cc-hh----hcc--cCccHHHHhccccCC----hhHHH
Q 012813 254 MVIPLLMDALRSGTIETRSNAAAALFTLSALD-S--------NK-EV----IGK--SGALKPLIDLLDEGH----QSAMK 313 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~--------~~-~~----i~~--~G~i~~Lv~lL~~~~----~~~~~ 313 (456)
.+++-++.++.. ++.........|..+...- + .+ .. +.+ ..++..+.+++.... .+...
T Consensus 26 ~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 104 (148)
T PF08389_consen 26 DFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVK 104 (148)
T ss_dssp THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHH
T ss_pred hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 356667777666 4555556666665554211 1 11 11 111 245555555555432 77889
Q ss_pred HHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCchHHHHHHHH
Q 012813 314 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAIL 358 (456)
Q Consensus 314 ~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L 358 (456)
.++.++......- .-..+.+.+.++.+.++|.++..++.|+.+|
T Consensus 105 ~~L~~l~s~i~~~-~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 105 AALKCLKSWISWI-PIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 9999999887733 3445566779999999998888899888775
No 339
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=56.08 E-value=2.3e+02 Score=28.65 Aligned_cols=129 Identities=12% Similarity=0.179 Sum_probs=83.4
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcc---cc-------CChhHHHHHHHHHHHhccCc
Q 012813 258 LLMDALRSGT-IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL---DE-------GHQSAMKDVASAIFNLCITH 326 (456)
Q Consensus 258 ~Lv~lL~~~~-~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL---~~-------~~~~~~~~a~~aL~~L~~~~ 326 (456)
.+..+|..|- ...+..+..++.-|+...+.-..+.....+..|+.+- .. .+..+.-.++.+|.|+..+.
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 3677777775 5566777778888887666554444333333333322 11 24578899999999998765
Q ss_pred -hhhHHHHhcCcHHHHHHHHcCC-------chHHHHHHHHHHhhC-CHHHHHHHH-hhCcHHHHHHHhhh
Q 012813 327 -ENKARAVRDGGVSVILKKIMDG-------VHVDELLAILAMLST-NHRAVEEIG-DLGGVSCMLRIIRE 386 (456)
Q Consensus 327 -~~~~~~v~~g~v~~Lv~lL~~~-------~~~~~a~~~L~~L~~-~~~~~~~i~-~~g~i~~Lv~ll~~ 386 (456)
..+....+...+..+.+.+... +..-.=+..|.-|.. ..+.|..+. +.+|++.+-..+..
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 4566667777777766665421 444555666666654 467777764 66888888888764
No 340
>PRK14707 hypothetical protein; Provisional
Probab=55.82 E-value=5e+02 Score=32.37 Aligned_cols=261 Identities=14% Similarity=0.092 Sum_probs=129.5
Q ss_pred hhHHHHHHHhcC--CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHH-ccc
Q 012813 164 DHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL-NLS 240 (456)
Q Consensus 164 ~~i~~Lv~~L~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~-~Ls 240 (456)
..|..++.-+++ +...-..|+..|..........+..+-. -.+-..+..|++.. +..+..+|+..|. .++
T Consensus 205 q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~--q~va~~lN~lsKwp-----~~~~C~~a~~~lA~rl~ 277 (2710)
T PRK14707 205 QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKP--QELGNALNALSKWA-----DTPVCAAAASALAERLV 277 (2710)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCCh--HHHHHHHHHHhcCC-----CchHHHHHHHHHHHHHh
Confidence 344555555553 2233445555555433323444444433 45666677777653 3344445554443 344
Q ss_pred cCcchhHHHhcCCCCHHHHHHHHhc-CCHHHHHHHHH-HHHHhccCCccchhhcccCccHHHHhcccc-C-ChhHHHHHH
Q 012813 241 IHDNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAA-ALFTLSALDSNKEVIGKSGALKPLIDLLDE-G-HQSAMKDVA 316 (456)
Q Consensus 241 ~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~-aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~-~-~~~~~~~a~ 316 (456)
.+..-++.+-.. + +.-.+.-|.. ++..+-..++. +-..|....+.+..+- .-.+...++-|++ + +..+...|.
T Consensus 278 ~~~~l~~al~~q-~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~-~~~~~~~LNalsKWpd~~~C~~Aa~ 354 (2710)
T PRK14707 278 DDPGLRKALDPI-N-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKALN-ARGLSTALNALSKWPDNPVCAAAVS 354 (2710)
T ss_pred hhHHHHHhcCHH-H-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccc-hHHHHHHHHHhhcCCCchhHHHHHH
Confidence 444444433322 1 2223333433 34444444444 4445655444443332 3334555566655 3 444444444
Q ss_pred HHHHHhccCchhhHHHHhcCcHHHHHHHHc-CC--c-hHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhH
Q 012813 317 SAIFNLCITHENKARAVRDGGVSVILKKIM-DG--V-HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRN 392 (456)
Q Consensus 317 ~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~-~~--~-~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 392 (456)
..-..|+.+++-+..+- .-++...+..|+ .+ . +...|..+=..|..+++-++.+--.| |..++.-+..-.+...
T Consensus 355 ~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKWPd~~~ 432 (2710)
T PRK14707 355 ALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKWPDLPI 432 (2710)
T ss_pred HHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcCCcchh
Confidence 45556777776666554 334555666665 44 3 33444444455666788888875555 5666666665434566
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHH
Q 012813 393 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKR 437 (456)
Q Consensus 393 ~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~ 437 (456)
...|+..|..-..++.+.++.+ .--++...|-.+.+=.+..+..
T Consensus 433 C~~aa~~lA~~la~d~~l~~~~-~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 433 CGQAVSALAGRLAHDTELCKAL-DPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHHHHHHHHHHhccHHHHhhc-ChHHHHHHHHHhhcCCCChhHH
Confidence 6667777765555555543333 2224444444444444444443
No 341
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=55.08 E-value=2.4e+02 Score=30.87 Aligned_cols=52 Identities=10% Similarity=0.071 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChh
Q 012813 349 VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 409 (456)
Q Consensus 349 ~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~ 409 (456)
+++..|+-+|.-+|.. |+ .++..|.+|..+.++.+|--|+.+|..-|.+...
T Consensus 570 DVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~ 622 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL 622 (929)
T ss_pred HHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc
Confidence 5666666666655542 22 3567788888776788998888888877776653
No 342
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.53 E-value=33 Score=35.88 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=49.5
Q ss_pred ChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhc
Q 012813 225 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDL 303 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~l 303 (456)
+.+++..|+.+|.-.+..+. ..++..+++|... +.-+|...+-+|.--|..... .-++..|-.|
T Consensus 565 nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L 629 (926)
T COG5116 565 NDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEAL 629 (926)
T ss_pred chHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHH
Confidence 45566666666655554432 3455566666543 677777777666655443321 2234555556
Q ss_pred cccCChhHHHHHHHHHHHhcc
Q 012813 304 LDEGHQSAMKDVASAIFNLCI 324 (456)
Q Consensus 304 L~~~~~~~~~~a~~aL~~L~~ 324 (456)
+.+.+.-++..|+.++.-+..
T Consensus 630 ~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 630 MYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred hhCcHHHHHHHHHHHHHHHHh
Confidence 666666777777777776653
No 343
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=53.42 E-value=63 Score=27.45 Aligned_cols=71 Identities=10% Similarity=0.148 Sum_probs=54.5
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccC
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 407 (456)
++..|.+-|..+ ..+-.|+.+|..+..+ ..-..++.+.+.+..|+.++....++.+++.++.++..-+...
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 556666666654 6777799999988875 4566777788899999999986555889999999998877543
No 344
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.24 E-value=10 Score=30.21 Aligned_cols=30 Identities=23% Similarity=0.573 Sum_probs=22.5
Q ss_pred ccccccchhhc----cCcccCC-CCccccHHHHHH
Q 012813 75 EFKCPLSKELM----RDPVILA-SGQTFDRPYIQR 104 (456)
Q Consensus 75 ~f~Cpi~~~~m----~dPv~l~-~g~~~~r~~I~~ 104 (456)
..+||=|+.-| +||++-| ||.+|-|+..+.
T Consensus 9 KridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 9 KRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred cccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 45788887655 6798888 899997776543
No 345
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=53.04 E-value=7.5 Score=35.53 Aligned_cols=41 Identities=22% Similarity=0.483 Sum_probs=33.3
Q ss_pred ccccccch-hhccCcc----cCC-CCccccHHHHHHHHhcCCCCCCC
Q 012813 75 EFKCPLSK-ELMRDPV----ILA-SGQTFDRPYIQRWLKAGNRTCPR 115 (456)
Q Consensus 75 ~f~Cpi~~-~~m~dPv----~l~-~g~~~~r~~I~~~~~~~~~~~P~ 115 (456)
+-.||+|+ +..-+|. +-| |=|.+|-+|+.+.|..|...||.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~ 56 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPY 56 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 55799998 6667775 236 88888999999999988788995
No 346
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=52.52 E-value=75 Score=26.27 Aligned_cols=71 Identities=11% Similarity=0.331 Sum_probs=47.2
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHH-HHHhhccHHHHHHHhh-----cC---CHHHHHHHHHHHHHHh
Q 012813 377 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKA-MREEESTHGTISKLAQ-----DG---TARAKRKATGILERLK 447 (456)
Q Consensus 377 i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~-~~~~~g~~~~L~~Ll~-----~~---~~~~k~~A~~~L~~l~ 447 (456)
+..|.+-|... ++.++..|+.+|..||...++.++. +......+..+...-. .| ...++..|..++..+-
T Consensus 40 ~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 40 LEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 34566666654 5999999999999999987755544 3334334444444432 22 3358999999998775
Q ss_pred c
Q 012813 448 R 448 (456)
Q Consensus 448 ~ 448 (456)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 347
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=52.36 E-value=64 Score=27.48 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=55.4
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccCh
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR 408 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~ 408 (456)
++..|.+-|.++ .++-.|+.+|..+..+ .....++.....+..|++++....++.+++..+.++...+....
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 456666666654 6777799999999874 45677888888899999999874458999999999988775443
No 348
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=52.23 E-value=1.5e+02 Score=29.75 Aligned_cols=138 Identities=10% Similarity=-0.014 Sum_probs=87.5
Q ss_pred ChhHHHHHHHHHHHhccCchhhHHHHhc---CcHHHHHHHHcCC-chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHH
Q 012813 308 HQSAMKDVASAIFNLCITHENKARAVRD---GGVSVILKKIMDG-VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRI 383 (456)
Q Consensus 308 ~~~~~~~a~~aL~~L~~~~~~~~~~v~~---g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~l 383 (456)
+.++...|+++|..+-.+++.-..+-+. -.+...+..+.++ ..+.-+...|+-|+...=..+ +.....+..++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~-~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK-IMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc-ccchhhHHHHHHH
Confidence 5678889999999988877755555332 1466777777665 345555566666665321111 2222233334333
Q ss_pred hhh----cCChhHHHHHHHHHHHHhccChhhHHHHHHhhc-cHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 384 IRE----STCDRNKENCIAILHTICLSDRTKWKAMREEES-THGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 384 l~~----~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g-~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
+.. -.+..+...++.++.++....+.. ++.... +.+.+...+-+....++.+|..++..+..+
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~---M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~ 205 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQ---MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKC 205 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 332 234566777889999999888764 443344 889888887777778888888888777543
No 349
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=52.11 E-value=5.2 Score=26.76 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=22.8
Q ss_pred cCcccCCCCccc-cHHHHHHHHhcCCCCCCCCcccccC
Q 012813 86 RDPVILASGQTF-DRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 86 ~dPv~l~~g~~~-~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
.+.-++.|..+| |..|+..-+.. +..||+|+.|+..
T Consensus 11 ~~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 11 ANKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp --SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred cCCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 344566666667 99999988876 6789999998854
No 350
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=51.88 E-value=11 Score=29.70 Aligned_cols=26 Identities=31% Similarity=0.687 Sum_probs=22.4
Q ss_pred CCccccHHHHHHHHhcCCCCCCCCccc
Q 012813 93 SGQTFDRPYIQRWLKAGNRTCPRTQQV 119 (456)
Q Consensus 93 ~g~~~~r~~I~~~~~~~~~~~P~~~~~ 119 (456)
|.|.|---||.+|+.. ...||.+.++
T Consensus 81 CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 81 CNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred cchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 6788999999999997 5789998765
No 351
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=51.85 E-value=1.8e+02 Score=32.15 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=69.5
Q ss_pred ccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcC--CchHHHHHHHHHHhhCC-HHHHHHHH
Q 012813 296 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTN-HRAVEEIG 372 (456)
Q Consensus 296 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~--~~~~~~a~~~L~~L~~~-~~~~~~i~ 372 (456)
.-..+...+..++.......+.++.+++.-..-...- ...-.+.-..-... +...+....+|..++.. ++....+.
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3444555556667777788888888887654311111 11111111111111 14566678888888884 66666555
Q ss_pred -hhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccC
Q 012813 373 -DLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 373 -~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 407 (456)
+.++...++.++-++. +.+.+.|..+|.......
T Consensus 521 ~d~~~~~~i~s~lfsp~-~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPD-DDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred cCcchhhHHHhheeCCC-hHHHHHHHHHHHHHhcCC
Confidence 5688999999998764 889999999999988643
No 352
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=51.11 E-value=18 Score=39.01 Aligned_cols=49 Identities=8% Similarity=-0.056 Sum_probs=38.1
Q ss_pred cCCCCCCccccccchhhccCcc----cCC---CCccccHHHHHHHHhc-----CCCCCCCC
Q 012813 68 ETVSCPEEFKCPLSKELMRDPV----ILA---SGQTFDRPYIQRWLKA-----GNRTCPRT 116 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~~~m~dPv----~l~---~g~~~~r~~I~~~~~~-----~~~~~P~~ 116 (456)
.....++.-+|++|..-+.+|| +.| +++.+|-.||+.|... ....|+||
T Consensus 89 ~DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC 149 (1134)
T KOG0825|consen 89 VDEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFC 149 (1134)
T ss_pred cCcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccH
Confidence 3445778889999999999976 556 7899999999999863 12346777
No 353
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=50.87 E-value=1.8e+02 Score=34.39 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=79.3
Q ss_pred CccHHHHhccccCChhHHHHHHHHHHHhccCch--hhHHHHhcCcHHHHHHHHcCC-chHHHHHHHHHHhhC-CHHHHHH
Q 012813 295 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHE--NKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLST-NHRAVEE 370 (456)
Q Consensus 295 G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--~~~~~v~~g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~-~~~~~~~ 370 (456)
+.+..++..|.++...++..|+++|.++..-+. -+...+..|+...+. .+. .+++.|+.++....- +++....
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~---DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN---DSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc---cchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 456667777777788899999999999987654 222233333333322 222 678889888875543 4554444
Q ss_pred HHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc--CCHH-HHHHHHHHHHHH
Q 012813 371 IGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD--GTAR-AKRKATGILERL 446 (456)
Q Consensus 371 i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~--~~~~-~k~~A~~~L~~l 446 (456)
+.+. +..=+. +.+-.+|.+++++|..+|...|.- ...+....+++.. +.+. +++-+..++..+
T Consensus 893 yY~~-----i~erIl-DtgvsVRKRvIKIlrdic~e~pdf-------~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 893 YYDQ-----IIERIL-DTGVSVRKRVIKILRDICEETPDF-------SKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHH-----HHhhcC-CCchhHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 3322 222222 234678999999999999877642 1223344444422 1222 566666555544
No 354
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=50.80 E-value=7.2 Score=26.66 Aligned_cols=13 Identities=23% Similarity=0.866 Sum_probs=11.4
Q ss_pred CCCCccccccchh
Q 012813 71 SCPEEFKCPLSKE 83 (456)
Q Consensus 71 ~~p~~f~Cpi~~~ 83 (456)
++|+++.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 5899999999974
No 355
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=50.64 E-value=2.7e+02 Score=30.12 Aligned_cols=130 Identities=12% Similarity=0.031 Sum_probs=73.0
Q ss_pred cCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHH
Q 012813 294 SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEE 370 (456)
Q Consensus 294 ~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~ 370 (456)
..++|.|..-+++.+..+++.++..+..++..-+ ...+..-++|.|-.+-... .++..++.++..+...- .+..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l-D~~~ 464 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL-DKAA 464 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH-HHHH
Confidence 3466777777777888888999888888876544 3345555667776663322 55666777777777111 1111
Q ss_pred HHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC
Q 012813 371 IGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG 431 (456)
Q Consensus 371 i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~ 431 (456)
+.+. +..+.+.++.. ++...-..+.+..++....... +.+.. ...++.+.-|.-.+
T Consensus 465 v~d~--~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~-~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 465 VLDE--LLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMA-ENVLPLLIPLSVAP 520 (700)
T ss_pred hHHH--HHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeeh-hhhhhhhhhhhhcc
Confidence 1111 23333444333 3666666666666665544331 12222 35666666665444
No 356
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=50.18 E-value=2.5e+02 Score=27.31 Aligned_cols=214 Identities=11% Similarity=0.129 Sum_probs=135.1
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhh----hhccCCchhhhhhccccccccCCCChhhHHHHHHHHH
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRAL----FGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 237 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~----i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 237 (456)
.+.+..|++.+.. .-+.+..++....++-+..-..|.. +......+..|+.- . ...+++.-.+-..|.
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~----~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---Y----ENTPEIALTCGNMLR 150 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---h----ccchHHHHHHHHHHH
Confidence 3455666666643 3455666666666655543333322 22213333333332 1 113566666666788
Q ss_pred ccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCc-c-chhhccc--Cc-cHHHHhccccCChhHH
Q 012813 238 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-N-KEVIGKS--GA-LKPLIDLLDEGHQSAM 312 (456)
Q Consensus 238 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~-~-~~~i~~~--G~-i~~Lv~lL~~~~~~~~ 312 (456)
....++.-...+..+. -.......++.++-++-..|..+...+..... . .+.+... -. .+.--.++.+++--.+
T Consensus 151 Ecirhe~LakiiL~s~-~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 151 ECIRHEFLAKIILEST-NFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HHHhhHHHHHHHHcch-hHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence 8788887777777765 45557778888888888888877777654331 1 1112211 12 2335568888888889
Q ss_pred HHHHHHHHHhccCchhhHHHHh----cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH----HHHHHHHhhCcHHHHHH
Q 012813 313 KDVASAIFNLCITHENKARAVR----DGGVSVILKKIMDG--VHVDELLAILAMLSTNH----RAVEEIGDLGGVSCMLR 382 (456)
Q Consensus 313 ~~a~~aL~~L~~~~~~~~~~v~----~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~----~~~~~i~~~g~i~~Lv~ 382 (456)
..+..+|+.+-.+..|...|.. ...+..++.+|+++ ..+-.|..+.+....++ +.+..+.+.. +.|++
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~ 307 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--PKLLE 307 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHH
Confidence 9999999999988888777754 26788999999976 78999999999988763 4555555442 45555
Q ss_pred Hhhh
Q 012813 383 IIRE 386 (456)
Q Consensus 383 ll~~ 386 (456)
++..
T Consensus 308 ~l~~ 311 (342)
T KOG1566|consen 308 LLHD 311 (342)
T ss_pred HHHH
Confidence 5543
No 357
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=50.09 E-value=9.3 Score=37.54 Aligned_cols=43 Identities=28% Similarity=0.500 Sum_probs=35.2
Q ss_pred ccccccchhhccCc----ccCCCCccccHHHHHHHHhc-CCCCCCCCc
Q 012813 75 EFKCPLSKELMRDP----VILASGQTFDRPYIQRWLKA-GNRTCPRTQ 117 (456)
Q Consensus 75 ~f~Cpi~~~~m~dP----v~l~~g~~~~r~~I~~~~~~-~~~~~P~~~ 117 (456)
++.|-.|++.+--. --+||.|.|--+|.+.++.+ +..+||.||
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 57899999987432 25899999999999999875 456899998
No 358
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.93 E-value=3.2e+02 Score=28.37 Aligned_cols=168 Identities=12% Similarity=0.104 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhccCCccchhhcccCccHHHHhcc----ccCChhHHHHHHHHHHHhccC-chhhHHHHhcCcHHHHHHH
Q 012813 270 TRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL----DEGHQSAMKDVASAIFNLCIT-HENKARAVRDGGVSVILKK 344 (456)
Q Consensus 270 ~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL----~~~~~~~~~~a~~aL~~L~~~-~~~~~~~v~~g~v~~Lv~l 344 (456)
-+....+.+..+.... .+-+.|.+..++..+ ++++...+..|++.|.|.+.. ++-+..... -.+..++.-
T Consensus 233 ~ritd~Af~ael~~~~----~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~g 307 (533)
T KOG2032|consen 233 GRITDIAFFAELKRPK----ELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRG 307 (533)
T ss_pred chHHHHHHHHHHhCcc----cccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHH
Confidence 3444444455554322 122445555555544 345667889999999999887 433333322 245666666
Q ss_pred HcCC---chHHHHHHHHHHhhCCHHHHHHHHhhCcHH---HHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhh
Q 012813 345 IMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVS---CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE 418 (456)
Q Consensus 345 L~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~---~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~ 418 (456)
|-++ ++.-.++.+|..+...-.+++ ++.+.++ .+-.+..+. ++..+..|..+...|+......++..+.+
T Consensus 308 L~D~~~~~V~leam~~Lt~v~~~~~~~~--l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte- 383 (533)
T KOG2032|consen 308 LYDDLNEEVQLEAMKCLTMVLEKASNDD--LESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTE- 383 (533)
T ss_pred HhcCCccHHHHHHHHHHHHHHHhhhhcc--hhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHH-
Confidence 6665 344444444444433222111 2233333 333444444 48889999988888877665555555432
Q ss_pred ccH---HHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 419 STH---GTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 419 g~~---~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
... .+|.-.+++.++.+-+.+...++.+
T Consensus 384 ~v~k~~~~lllhl~d~~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 384 QVKKRLAPLLLHLQDPNPYVARACRSELRTC 414 (533)
T ss_pred HHHhccccceeeeCCCChHHHHHHHHHHHhc
Confidence 222 2333445667776655555555543
No 359
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=48.68 E-value=74 Score=31.24 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhccCchhhHHHHhcC--cHHHHHHHHcCC-----chHHHHHHHHHHhhCCH----HHHHHH---HhhCc
Q 012813 311 AMKDVASAIFNLCITHENKARAVRDG--GVSVILKKIMDG-----VHVDELLAILAMLSTNH----RAVEEI---GDLGG 376 (456)
Q Consensus 311 ~~~~a~~aL~~L~~~~~~~~~~v~~g--~v~~Lv~lL~~~-----~~~~~a~~~L~~L~~~~----~~~~~i---~~~g~ 376 (456)
++-.|+..|..+...+.....+...+ .+..|++++.-+ .++..|+.+|..++.+. +...++ +.+|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 45566777777777777778887765 899999999843 67888999999999853 333343 34566
Q ss_pred HHHHHH
Q 012813 377 VSCMLR 382 (456)
Q Consensus 377 i~~Lv~ 382 (456)
+..+++
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 666663
No 360
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=48.35 E-value=2.7e+02 Score=27.73 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=59.6
Q ss_pred HHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCCh-hHHHHHHHHHHHHhccChhhHHH
Q 012813 338 VSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCD-RNKENCIAILHTICLSDRTKWKA 413 (456)
Q Consensus 338 v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~~A~~~L~~l~~~~~~~~~~ 413 (456)
|..+++-|... ..+..++--|+.-|.+++-|..+..+|.+..+++.+....+. ...-.++.++..++..... ..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~--~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN--MH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc--hh
Confidence 45566666522 567777777788888999999999999999999998643223 3344445555555554432 24
Q ss_pred HHHhhccHHHHHHHhh
Q 012813 414 MREEESTHGTISKLAQ 429 (456)
Q Consensus 414 ~~~~~g~~~~L~~Ll~ 429 (456)
++........+.+|+.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 4444567777777765
No 361
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.83 E-value=4e+02 Score=28.69 Aligned_cols=146 Identities=18% Similarity=0.234 Sum_probs=81.0
Q ss_pred cCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhc---cccCChhHHHHHHHHHHHhccCc
Q 012813 251 ETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDL---LDEGHQSAMKDVASAIFNLCITH 326 (456)
Q Consensus 251 ~~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~l---L~~~~~~~~~~a~~aL~~L~~~~ 326 (456)
+...++|.|++.|..- +.+...++...|+..+....|...+.+ .++.- .+.++.+..+..+.-+..-+...
T Consensus 356 En~eVLpqlvdalg~vqT~ds~~a~~dfL~~~S~sss~~~~l~e-----~~ly~lg~a~hp~ee~i~~l~~k~~~~Si~s 430 (896)
T KOG4337|consen 356 ENDEVLPQLVDALGGVQTADSITAADDFLFGISQSSSNNEKLHE-----QLLYWLGSADHPSEETIATLLNKRCEASISS 430 (896)
T ss_pred hhhhHHHHHHHHhccccchhhHHHHHHHHhccccccchhHHHHH-----HHHHHhhccCCCcHHHHHHHHHHHhhhhhhh
Confidence 5557999999999753 677888888889988887665554432 22222 23344443333222222211111
Q ss_pred hhhHHHHhcC---cHHHHHHHHcCCchHHHHHHHHHHhhCC-----------HHHHHHHHhh---CcHHHHHHHhhhcCC
Q 012813 327 ENKARAVRDG---GVSVILKKIMDGVHVDELLAILAMLSTN-----------HRAVEEIGDL---GGVSCMLRIIRESTC 389 (456)
Q Consensus 327 ~~~~~~v~~g---~v~~Lv~lL~~~~~~~~a~~~L~~L~~~-----------~~~~~~i~~~---g~i~~Lv~ll~~~~~ 389 (456)
-+. .+.| .+..|++.+..+.+...++.-+.++.-. .....++.+. .+|+.|++.-..+..
T Consensus 431 ~~~---~re~v~~iv~tlir~~~~~gve~~~l~e~~~~ilgglt~aek~~~s~~y~~Al~N~~lPa~i~~Lle~a~sGe~ 507 (896)
T KOG4337|consen 431 LNS---CREGVETIVNTLIRDLTAGGVEVRVLEELENIILGGLTFAEKFIESEDYQKALLNVILPAAIKNLLETAVSGEK 507 (896)
T ss_pred hHH---HhhhHHHHHHHHHHHhhCCCcccHHHHHHHHHHhccchhcccccchHHHHHHHHhccChhhHHHHHHHHhccCC
Confidence 111 2222 4566777666555555555555555321 1222333222 468888888887765
Q ss_pred hhHHHHHHHHHHHHh
Q 012813 390 DRNKENCIAILHTIC 404 (456)
Q Consensus 390 ~~~~~~A~~~L~~l~ 404 (456)
|..--.|..+|...-
T Consensus 508 p~~s~~atsAl~~f~ 522 (896)
T KOG4337|consen 508 PEQSMRATSALAEFF 522 (896)
T ss_pred cchhHHHHHHHHhcC
Confidence 666666777766543
No 362
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=46.72 E-value=8.1 Score=26.04 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=8.8
Q ss_pred CCCCCccccccchh
Q 012813 70 VSCPEEFKCPLSKE 83 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~ 83 (456)
.++|+++.||+|+-
T Consensus 29 ~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 29 EDLPDDWVCPVCGA 42 (47)
T ss_dssp GGS-TT-B-TTTSS
T ss_pred HHCCCCCcCcCCCC
Confidence 35899999999974
No 363
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=46.28 E-value=2.6e+02 Score=26.42 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=73.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcc-CCccchhhcccCccHHHHhcccc--CChhHHHHHHHHHHHhccCchhhHHHHhc
Q 012813 259 LMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDE--GHQSAMKDVASAIFNLCITHENKARAVRD 335 (456)
Q Consensus 259 Lv~lL~~~~~~~~~~aa~aL~~Ls~-~~~~~~~i~~~G~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~~v~~ 335 (456)
|=..|.+.+...|..|...|..+.. .+... ....-+..|++...+ .|......++.+|..|..... ...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-----~~~ 75 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-----FSP 75 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-----CCh
Confidence 3345677888899999888877553 22221 111223444444433 355666666777777763332 111
Q ss_pred CcHHHHHHHHcC----C----chHHHHHHHHHHhhCCHHHHHHHHhh--CcHHHHHHHhhhcCChhHHHHHHHHHHHHh
Q 012813 336 GGVSVILKKIMD----G----VHVDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTIC 404 (456)
Q Consensus 336 g~v~~Lv~lL~~----~----~~~~~a~~~L~~L~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~ 404 (456)
+.+..+++.+.. . ..+..+..+|..|..+. +..+... +.+..+++++....+|+.-..+..++..+.
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 123333333321 1 34556777777776542 2222222 356777777776566777666666666664
No 364
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=45.82 E-value=93 Score=25.95 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=53.4
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhh--cCChhHHHHHHHHHHHHhccCh
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRE--STCDRNKENCIAILHTICLSDR 408 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~--~~~~~~~~~A~~~L~~l~~~~~ 408 (456)
++..|.+.|..+ ..+-.|+.+|..+..+ +.....+.....+..|+.++.. ..++.++..++.++...+...+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456666667654 6777899999999885 3466677776777789999875 3457899999999988776544
No 365
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=45.66 E-value=89 Score=22.10 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=30.7
Q ss_pred HHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhc
Q 012813 358 LAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 405 (456)
Q Consensus 358 L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 405 (456)
|..||....+|+.+.+.|+-+.|-.+=....++.+++.+-.+...|-.
T Consensus 2 LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLir 49 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIR 49 (58)
T ss_pred HhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 567889999999999888655443332223346777666655554444
No 366
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=45.48 E-value=2.5e+02 Score=29.09 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHhccCCc
Q 012813 267 TIETRSNAAAALFTLSALDS 286 (456)
Q Consensus 267 ~~~~~~~aa~aL~~Ls~~~~ 286 (456)
+.++|..+...|..+....+
T Consensus 42 p~e~R~~~~~ll~~~i~~~~ 61 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQD 61 (464)
T ss_pred CHHHHHHHHHHHHHHHHccc
Confidence 35566666666666554443
No 367
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=45.32 E-value=2.1e+02 Score=27.04 Aligned_cols=145 Identities=12% Similarity=0.070 Sum_probs=79.2
Q ss_pred HHHhccccCChhHHHHHHHHHHHhccCch-hhHHHHhcCcHHHHHHHH----cCCchHHHHHHHHHHhhCCHHHHHHHHh
Q 012813 299 PLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKI----MDGVHVDELLAILAMLSTNHRAVEEIGD 373 (456)
Q Consensus 299 ~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~~v~~g~v~~Lv~lL----~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 373 (456)
.|-.-|.++++..+..|+..|..+...-. +. ....-+..|+++. .+......++..|..|...........
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~- 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA- 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-
Confidence 44556777889999999999987754322 21 2222345555554 444556666777777764322100000
Q ss_pred hCcHHHHHHHhhh-cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcc
Q 012813 374 LGGVSCMLRIIRE-STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRT 449 (456)
Q Consensus 374 ~g~i~~Lv~ll~~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~-~~~~k~~A~~~L~~l~~~ 449 (456)
...+..+.+-... ......|..+..+|..+..+.....+.+- .+++..++.+.... +|+--..+=.+++.+.+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 0012222221111 11245677788888888776554332222 35666666666544 888777777777766443
No 368
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=44.79 E-value=8.8 Score=43.58 Aligned_cols=45 Identities=22% Similarity=0.447 Sum_probs=38.6
Q ss_pred CCCccccccchhhccCcc-cCCCCccccHHHHHHHHhcCCCCCCCCc
Q 012813 72 CPEEFKCPLSKELMRDPV-ILASGQTFDRPYIQRWLKAGNRTCPRTQ 117 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv-~l~~g~~~~r~~I~~~~~~~~~~~P~~~ 117 (456)
.-+++.|+||.++|+.-= +.-|||.+|-+|+.-|+.. +..||.|.
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 556789999999999654 5669999999999999997 67899986
No 369
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=44.76 E-value=1e+02 Score=25.10 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=30.3
Q ss_pred ccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHh
Q 012813 296 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR 334 (456)
Q Consensus 296 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~ 334 (456)
+|+.|++-|.+.++++...|+.+|...|..+..-..++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 477888888888889999999999998887754444443
No 370
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=44.38 E-value=1e+02 Score=24.01 Aligned_cols=68 Identities=15% Similarity=0.026 Sum_probs=49.3
Q ss_pred HHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHH-hhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChh
Q 012813 339 SVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIG-DLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 409 (456)
Q Consensus 339 ~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~ 409 (456)
...+..+.++ .++.+++..|..|..... ..+. -.+++..+...+++. ++-+--+|+..|..|+...++
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH
Confidence 4455666666 789999999999988655 1222 234556666777755 488899999999999998775
No 371
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=44.00 E-value=1.7e+02 Score=23.49 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=48.0
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh---hcC---CHHHHHHHHHHHHHHh
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA---QDG---TARAKRKATGILERLK 447 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll---~~~---~~~~k~~A~~~L~~l~ 447 (456)
++..|.+-|.+. +++.+-.|+.+|-.+..+....+...+....+...+.++. ..| +..+|+++..++....
T Consensus 38 ~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 345566666655 5999999999999999988766655554444444444421 122 5679999999887653
No 372
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=43.99 E-value=3.6e+02 Score=27.81 Aligned_cols=171 Identities=9% Similarity=0.105 Sum_probs=86.0
Q ss_pred ChhhHHHHHHHHHccccCcch--hHHHhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCccchhhcccCccHHHH
Q 012813 225 NPNLQEDVITTLLNLSIHDNN--KKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI 301 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv 301 (456)
..+-++.|+.-|..+...... ..+... ..+-.++++|.. .+...++.|.+.|..++.+...+-.=...=+|..++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 445566666655555444421 111111 134557788877 567788889999999887543222111112344444
Q ss_pred hccccCChhHHHHHHH-HHHHhccCchhhHHHHhcCcHHHHHHHHcC-C-chHHHHHHHHHHhhCC--HHHHHHHHhhCc
Q 012813 302 DLLDEGHQSAMKDVAS-AIFNLCITHENKARAVRDGGVSVILKKIMD-G-VHVDELLAILAMLSTN--HRAVEEIGDLGG 376 (456)
Q Consensus 302 ~lL~~~~~~~~~~a~~-aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~-~-~~~~~a~~~L~~L~~~--~~~~~~i~~~g~ 376 (456)
+.-.+..+++...|.. ++..|++....+. |..+..++.. + .....++..+..|+.. .+.-..++. ..
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-di 449 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP-DI 449 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh-hh
Confidence 4444444545444443 3444444433221 1122222222 1 2222333444555542 121112221 35
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHhcc
Q 012813 377 VSCMLRIIRESTCDRNKENCIAILHTICLS 406 (456)
Q Consensus 377 i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 406 (456)
.|.+++.-.+. +..+|..|+.+|..+...
T Consensus 450 aP~~iqay~S~-SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 450 APCVIQAYDST-SSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred hhHHHHHhcCc-hHHhhhhHHHhHHHHHHH
Confidence 67777777754 477899999998877653
No 373
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=43.27 E-value=2e+02 Score=25.58 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHccccC-cc-----hhHHHhcCC------CCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc-
Q 012813 227 NLQEDVITTLLNLSIH-DN-----NKKLVAETP------MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK- 293 (456)
Q Consensus 227 ~~~~~a~~~L~~Ls~~-~~-----~~~~i~~~~------~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~- 293 (456)
.++..|+..|..+... +. +...+.-+. ...+.+.-++.++++.+|..|+.+|..|-.....--...+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Q ss_pred -------------------cCccHHHHhccccC-ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc------C
Q 012813 294 -------------------SGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM------D 347 (456)
Q Consensus 294 -------------------~G~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~------~ 347 (456)
...-..|+..|..+ +..+....+++|..|.....-... +.|.++.++.-+. +
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHHHHHHHHHHhcCC
Q ss_pred CchHHHHHHHHHHhhC
Q 012813 348 GVHVDELLAILAMLST 363 (456)
Q Consensus 348 ~~~~~~a~~~L~~L~~ 363 (456)
.+++..++.++..+.+
T Consensus 159 ~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 159 PNVRVAALSCLGALLS 174 (182)
T ss_pred CcHHHHHHHHHHHHHc
No 374
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=43.11 E-value=19 Score=35.66 Aligned_cols=38 Identities=16% Similarity=0.361 Sum_probs=26.2
Q ss_pred cccCCCCccccH-----HHHHHHHhcC------------CCCCCCCcccccCCCC
Q 012813 88 PVILASGQTFDR-----PYIQRWLKAG------------NRTCPRTQQVLSHTIL 125 (456)
Q Consensus 88 Pv~l~~g~~~~r-----~~I~~~~~~~------------~~~~P~~~~~l~~~~l 125 (456)
|..-+|++.||| +|+-+|+.+. .-+||+||.++...|+
T Consensus 301 ~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 334567777765 6789998642 2469999999876543
No 375
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=42.02 E-value=11 Score=40.15 Aligned_cols=63 Identities=14% Similarity=0.407 Sum_probs=43.9
Q ss_pred ccccccchhhccCcccCCCCccccHHHHHHHHh--cCCCCCCCCcccccCCCCcccHHHHHHHHH
Q 012813 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLK--AGNRTCPRTQQVLSHTILTPNHLIREMISQ 137 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~--~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~ 137 (456)
+..||||.+...+|+.+.|-|.||+.|+-.-|. .+...||+|+..........-....+++++
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe 85 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKE 85 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHH
Confidence 556999999999999999999999999876543 335679999755543332222233444443
No 376
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=41.73 E-value=1e+02 Score=29.50 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=48.0
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccch--hhcccCccHHHHhcc----c--------cCChhHHHHHHHHH
Q 012813 254 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKE--VIGKSGALKPLIDLL----D--------EGHQSAMKDVASAI 319 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~--~i~~~G~i~~Lv~lL----~--------~~~~~~~~~a~~aL 319 (456)
-++|.++.++.+.+++.+..++.+|..+...-.... .+.+.|..+.+-+.| . ..+..+...|.-+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 378999999999999999999999999876433222 244556554444333 2 23456667777777
Q ss_pred HHhcc
Q 012813 320 FNLCI 324 (456)
Q Consensus 320 ~~L~~ 324 (456)
..|+.
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 77743
No 377
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=41.12 E-value=2.9e+02 Score=25.49 Aligned_cols=129 Identities=14% Similarity=0.022 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccC-------------Ch-----hHHHHHHHHHHHhccCchhh
Q 012813 268 IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-------------HQ-----SAMKDVASAIFNLCITHENK 329 (456)
Q Consensus 268 ~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~-------------~~-----~~~~~a~~aL~~L~~~~~~~ 329 (456)
......++..+..|...++....+...+.++.+++.|..- ++ .+...=...|+.||.+..+.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 3444555666666666666555555666666666665421 11 12223356788999999888
Q ss_pred HHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHH-HHhhhcCChhHHHHHHHHHHHHhc
Q 012813 330 ARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCML-RIIRESTCDRNKENCIAILHTICL 405 (456)
Q Consensus 330 ~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv-~ll~~~~~~~~~~~A~~~L~~l~~ 405 (456)
..+-+.+....+..+.....-.....-+|.+|=... .|-...++ +.|.++ +..+|..|...|..+..
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~~~l~klil~~LDY~~--------~~~~R~iLsKaLt~~-s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSRDDLLKLILSSLDYSV--------DGHPRIILSKALTSG-SESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHCCHHHHHHHHHccCchHHHHHHHHhhCCCCC--------ccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhc
Confidence 888888999999998876533333334455542221 23334444 555544 58899999998887643
No 378
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=40.66 E-value=70 Score=31.44 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhccCCccchhhcccC--ccHHHHhccccC---ChhHHHHHHHHHHHhccCchhhHHHH-------hcCc
Q 012813 270 TRSNAAAALFTLSALDSNKEVIGKSG--ALKPLIDLLDEG---HQSAMKDVASAIFNLCITHENKARAV-------RDGG 337 (456)
Q Consensus 270 ~~~~aa~aL~~Ls~~~~~~~~i~~~G--~i~~Lv~lL~~~---~~~~~~~a~~aL~~L~~~~~~~~~~v-------~~g~ 337 (456)
+|-.|...|..+.........+...+ .+..|+++++.+ ...++..|+.+|..++....-...++ .+|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 44455555555555555556666554 999999999865 46788999999999998664333332 3466
Q ss_pred HHHHHHH
Q 012813 338 VSVILKK 344 (456)
Q Consensus 338 v~~Lv~l 344 (456)
++.+++.
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 6666654
No 379
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=40.43 E-value=1.3e+02 Score=25.12 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=51.5
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChh-HHHHHHHHHHHHhcc
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDR-NKENCIAILHTICLS 406 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~-~~~~A~~~L~~l~~~ 406 (456)
++..|-+-|.++ ..+-.|+.+|..+..+ .....++...+++..|+.++....+.. +++.++.++..-+..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 445566666654 6677899999999885 556677778888999999988643333 889898888876653
No 380
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.29 E-value=33 Score=34.16 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=27.3
Q ss_pred ccccccchhhcc---CcccCCCCccccHHHHHHHHh
Q 012813 75 EFKCPLSKELMR---DPVILASGQTFDRPYIQRWLK 107 (456)
Q Consensus 75 ~f~Cpi~~~~m~---dPv~l~~g~~~~r~~I~~~~~ 107 (456)
-|.|-||.+-.. +-+.+||+|.|||+|...++.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 588999996653 345899999999999999976
No 381
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=39.87 E-value=5.5e+02 Score=28.28 Aligned_cols=236 Identities=18% Similarity=0.144 Sum_probs=119.4
Q ss_pred CCchhhhhhccccccccCC--CChhhHHHHHHHHHcccc--Cc-chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 012813 205 HDAIPQLLSPLSESKCENG--INPNLQEDVITTLLNLSI--HD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALF 279 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~--~~~~~~~~a~~~L~~Ls~--~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~ 279 (456)
.|.++.+++.|......++ +++--.+-|++.+.++.. .. .-...+.+.- +++.++..+++...-.+..++..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~f-iv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYF-IVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHH-HHHHhhHhhcCcccchHHHHHHHHH
Confidence 4788999999954332111 234445566776666543 22 1222222221 3444555566666677888888888
Q ss_pred HhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc-CCc-hHHHHHHH
Q 012813 280 TLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM-DGV-HVDELLAI 357 (456)
Q Consensus 280 ~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~-~~~-~~~~a~~~ 357 (456)
.++. +-+....-..+.+...+++.+.+..+.-.|+-||.-+-.+.+....+-++ +.+.+=++|+ +.. -.+.--++
T Consensus 486 ~~ee--Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sah-Vp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 486 TIEE--DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAH-VPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHH--hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhh-hhHHHHHHHHhcccccchHHHHH
Confidence 7732 33333333456677778888888889999999998887777554444332 3333334443 111 11112223
Q ss_pred HHHhhC-CHHHHHHHH-h--hCcHHHHHHHhh----hc-----CChhHHHHHHHHHHHHhc-----c-ChhhHHHHHHhh
Q 012813 358 LAMLST-NHRAVEEIG-D--LGGVSCMLRIIR----ES-----TCDRNKENCIAILHTICL-----S-DRTKWKAMREEE 418 (456)
Q Consensus 358 L~~L~~-~~~~~~~i~-~--~g~i~~Lv~ll~----~~-----~~~~~~~~A~~~L~~l~~-----~-~~~~~~~~~~~~ 418 (456)
+..+.. .++.-.-+. + ...+...+++.+ ++ ..+.-+-.|.++|..+.. . .+.-.+.. +.
T Consensus 563 Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~l--e~ 640 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYL--EV 640 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHH--HH
Confidence 333332 122111111 0 012333443433 22 113445667777765542 1 11111222 23
Q ss_pred ccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 419 STHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 419 g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
...+.+--++.+.-.+.-+.|..+|-++
T Consensus 641 slypvi~Filkn~i~dfy~Ea~dildg~ 668 (970)
T COG5656 641 SLYPVISFILKNEISDFYQEALDILDGY 668 (970)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 4555555566666666666666666543
No 382
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=39.68 E-value=3.4e+02 Score=25.74 Aligned_cols=142 Identities=15% Similarity=0.110 Sum_probs=69.4
Q ss_pred CccHHHHhccccC--ChhHHHHHHHHHHHhccCch--------hhHHHHhcCcHHHHHHHHcCCc------hHHHHHHHH
Q 012813 295 GALKPLIDLLDEG--HQSAMKDVASAIFNLCITHE--------NKARAVRDGGVSVILKKIMDGV------HVDELLAIL 358 (456)
Q Consensus 295 G~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~--------~~~~~v~~g~v~~Lv~lL~~~~------~~~~a~~~L 358 (456)
|..+.|..++-.| +....+.++..|..|...+. +|-.+.=.+.+|.++.-+.++. ....++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 4555555555444 45567778888887776543 2222222355677777666554 234566667
Q ss_pred HHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccC-hhhHHHHHHhhccHHHHHHHhhcCCHHHHH
Q 012813 359 AMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD-RTKWKAMREEESTHGTISKLAQDGTARAKR 437 (456)
Q Consensus 359 ~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~-~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~ 437 (456)
..+|.. ...+.+..++.....+.-.....-...+...|+... +.. +...+..|..++.++.+-+|.
T Consensus 140 a~~a~~-------~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~------~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 140 AQVAEA-------QGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH------EFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHh-------CCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHhCCcHHHHH
Confidence 776621 011223333322222221111222222222222211 222 123345566667777777777
Q ss_pred HHHHHHHHHhcc
Q 012813 438 KATGILERLKRT 449 (456)
Q Consensus 438 ~A~~~L~~l~~~ 449 (456)
+...+|+.+=.+
T Consensus 207 ~~L~iL~~ll~~ 218 (262)
T PF14225_consen 207 KTLQILKVLLPH 218 (262)
T ss_pred HHHHHHHHHhcc
Confidence 777777665433
No 383
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=39.46 E-value=37 Score=23.36 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=19.0
Q ss_pred CccccccchhhccCcccCCCCccccHHHHHHHHh-----c-CCCCCCCCcc
Q 012813 74 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLK-----A-GNRTCPRTQQ 118 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~-----~-~~~~~P~~~~ 118 (456)
+.|.||.|++ .|+...+.+|+. . ....||+|..
T Consensus 1 ~~f~CP~C~~------------~~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGK------------GFSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCC------------ccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 3688998765 233334444433 2 2346999965
No 384
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=39.23 E-value=1.8e+02 Score=28.83 Aligned_cols=107 Identities=11% Similarity=0.092 Sum_probs=61.8
Q ss_pred CHHHHHHHHhcC-------CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccC----------ChhHHHHHHH
Q 012813 255 VIPLLMDALRSG-------TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG----------HQSAMKDVAS 317 (456)
Q Consensus 255 ~i~~Lv~lL~~~-------~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~----------~~~~~~~a~~ 317 (456)
.+|.++.++..+ +.........++..|..++......--+-.+|.++.++-.. .-.++..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 456666665433 45556666667777776665433333345778888766331 2367889999
Q ss_pred HHHHhccCchhhHHHHhcCcHHHHHHHHcCC----chHHHHHHHHHHh
Q 012813 318 AIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDELLAILAML 361 (456)
Q Consensus 318 aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~----~~~~~a~~~L~~L 361 (456)
.|..+|..-.....-+..-+...|.+.+.++ ....-|+..|..|
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9999986443322222333444666666654 2244455555554
No 385
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=39.22 E-value=35 Score=29.61 Aligned_cols=39 Identities=28% Similarity=0.321 Sum_probs=24.2
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCC
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTI 124 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~ 124 (456)
..-+..|.||-|+.-+ ||+- .+. .+++||.|+.+|...+
T Consensus 104 e~~~~~Y~Cp~c~~r~----------tf~e-----A~~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 104 ETNNMFFICPNMCVRF----------TFNE-----AME-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred ccCCCeEECCCCCcEe----------eHHH-----HHH-cCCcCCCCCCEeeecc
Confidence 3456789999876222 1211 112 2689999999986543
No 386
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.69 E-value=14 Score=36.46 Aligned_cols=49 Identities=16% Similarity=0.288 Sum_probs=34.1
Q ss_pred CCCccccccchhhccCcc---cC-CCCccccHHHHHHHHhc-CC-----CCCCCCcccc
Q 012813 72 CPEEFKCPLSKELMRDPV---IL-ASGQTFDRPYIQRWLKA-GN-----RTCPRTQQVL 120 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv---~l-~~g~~~~r~~I~~~~~~-~~-----~~~P~~~~~l 120 (456)
.-++|.||++..+|++-- -+ .+|..|+-.+|++--.. .+ .--||+|+.+
T Consensus 98 s~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~Di 156 (518)
T KOG0883|consen 98 SEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADI 156 (518)
T ss_pred CCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhce
Confidence 567899999999998863 23 47999999999874221 11 1247777653
No 387
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=38.66 E-value=4.4e+02 Score=26.79 Aligned_cols=150 Identities=11% Similarity=0.055 Sum_probs=90.9
Q ss_pred HHHHhccccCC-hhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc---C----C-----chHHHHHHHHHHhhCC
Q 012813 298 KPLIDLLDEGH-QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM---D----G-----VHVDELLAILAMLSTN 364 (456)
Q Consensus 298 ~~Lv~lL~~~~-~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~---~----~-----~~~~~a~~~L~~L~~~ 364 (456)
..++.+|..+- ...+..++.++.-|+.+...-..+.....+..|+.+-. + + .+...++.+|+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 45566666554 33445667777777776654433333333444444432 1 1 4567799999999987
Q ss_pred -HHHHHHHHhhCcHHHHHHHhhhc----CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC--------
Q 012813 365 -HRAVEEIGDLGGVSCMLRIIRES----TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-------- 431 (456)
Q Consensus 365 -~~~~~~i~~~g~i~~Lv~ll~~~----~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~-------- 431 (456)
+..+..+.+......+++.+... .....+-.=+++|..|.........+++.+.++++.+..++.+.
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 55677777776666666555421 11233445566777777766666677887889999999986432
Q ss_pred -CH---HHHHHHHHHHHHHh
Q 012813 432 -TA---RAKRKATGILERLK 447 (456)
Q Consensus 432 -~~---~~k~~A~~~L~~l~ 447 (456)
++ .--..|..+|+-+-
T Consensus 208 ~~~l~pqe~n~a~EaLK~~F 227 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFF 227 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 12 33456777777553
No 388
>PF14353 CpXC: CpXC protein
Probab=38.29 E-value=18 Score=30.10 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=29.8
Q ss_pred ccccccchhhccCcccCCCCccccHHHHHHHHhcC--CCCCCCCccccc
Q 012813 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG--NRTCPRTQQVLS 121 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~--~~~~P~~~~~l~ 121 (456)
+.+||-|+..+.-.+-..=.-..+....++-+... ..+||.|+....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 46899999998876633211134556666666421 357999987653
No 389
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=38.15 E-value=28 Score=33.11 Aligned_cols=43 Identities=30% Similarity=0.663 Sum_probs=33.1
Q ss_pred ccccccchhhc----cCcccCCCCccccHHHHHHHHhcCCCCCCCCcc
Q 012813 75 EFKCPLSKELM----RDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQ 118 (456)
Q Consensus 75 ~f~Cpi~~~~m----~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~ 118 (456)
++-|||+.+-+ .+|..++|||+.-.++.+.....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 34599999766 457788999987777777777665 89999965
No 390
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=37.87 E-value=3.9e+02 Score=25.95 Aligned_cols=103 Identities=10% Similarity=0.088 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhccCchhhHH--------------------H--HhcCcHHHHHHHHcCC----chHHHHHHHHHHhhC-
Q 012813 311 AMKDVASAIFNLCITHENKAR--------------------A--VRDGGVSVILKKIMDG----VHVDELLAILAMLST- 363 (456)
Q Consensus 311 ~~~~a~~aL~~L~~~~~~~~~--------------------~--v~~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~- 363 (456)
++..=++.+.++|..+.++.. . ...|.+..+++.+... ..+---+.++....+
T Consensus 48 lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg 127 (303)
T PF12463_consen 48 LKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRG 127 (303)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcC
Confidence 566678889999885533321 1 1236777788777643 223233344444444
Q ss_pred --CHHHHHHHHhhCcHHHHHHHhhhcC--ChhHHHHHHHHHHHHhccChhhHHH
Q 012813 364 --NHRAVEEIGDLGGVSCMLRIIREST--CDRNKENCIAILHTICLSDRTKWKA 413 (456)
Q Consensus 364 --~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~~A~~~L~~l~~~~~~~~~~ 413 (456)
...-+.-+.+.|.++.++..+-++. +..+-..+..+|..|.++++...+.
T Consensus 128 ~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~f~~ 181 (303)
T PF12463_consen 128 ATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDAFQR 181 (303)
T ss_pred CCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3345556678899999997776543 2457778999999999988754433
No 391
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=37.86 E-value=37 Score=28.32 Aligned_cols=50 Identities=16% Similarity=0.310 Sum_probs=39.0
Q ss_pred CccccccchhhccCcccC-C---CCccccHHHHHHHHh--cCCCCCCCCcccccCC
Q 012813 74 EEFKCPLSKELMRDPVIL-A---SGQTFDRPYIQRWLK--AGNRTCPRTQQVLSHT 123 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l-~---~g~~~~r~~I~~~~~--~~~~~~P~~~~~l~~~ 123 (456)
.-+.|-||++.-.|+-.+ | ||...|-.|-..-|. .-++.||.|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 567899999999999876 3 798888888876554 2367899998877543
No 392
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=37.15 E-value=49 Score=34.11 Aligned_cols=69 Identities=10% Similarity=0.117 Sum_probs=41.8
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 378 SCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 378 ~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
..+++.+-...+++++++|..++.+++...+.. +..+.....-..+++++-..-+++-+.+..+|+.+.
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r-~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENR-RILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheeccccc-ccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 344444443456999999999999999886654 223333344556666666665555555555554443
No 393
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=37.13 E-value=1.4e+02 Score=32.32 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=71.0
Q ss_pred cHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhc--CcHHHHHHHHc----C--CchHHHHHHHHHHhhCC----
Q 012813 297 LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD--GGVSVILKKIM----D--GVHVDELLAILAMLSTN---- 364 (456)
Q Consensus 297 i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~--g~v~~Lv~lL~----~--~~~~~~a~~~L~~L~~~---- 364 (456)
...++++|.+.+--.+..-+.+.+|+..+..-..+++++ .-+..|++++. + +-++.+|+.++..++.-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 456778888888777777788888887765444456553 23555666654 3 25678888888888763
Q ss_pred HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccCh
Q 012813 365 HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR 408 (456)
Q Consensus 365 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~ 408 (456)
+..|.++. ..++.-++.. +..++++|+.++.-|-...|
T Consensus 381 ~~~r~ev~-----~lv~r~lqDr-ss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 VGRRHEVI-----RLVGRRLQDR-SSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cchHHHHH-----HHHHHHhhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 44555553 3455666643 47899999999887765444
No 394
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=36.39 E-value=1.5e+02 Score=25.08 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=52.3
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhh-----cCChhHHHHHHHHHHHHhccC
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRE-----STCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~-----~~~~~~~~~A~~~L~~l~~~~ 407 (456)
++..|.+.|.++ ..+-.|+.+|..+..+ +....++...+.+..|++++.. ..++.++...+.++..-+...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 556666777655 5667788888888874 5667788888888899999963 134789999999888766533
No 395
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=35.94 E-value=1.3e+02 Score=32.37 Aligned_cols=165 Identities=15% Similarity=0.101 Sum_probs=81.1
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhcccc----CChhHHHHHHHHHHHhccCch-
Q 012813 254 MVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDE----GHQSAMKDVASAIFNLCITHE- 327 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~----~~~~~~~~a~~aL~~L~~~~~- 327 (456)
.++..+.+++..+.....+ ++.+|..|.... ..- ...+..+..|++. .++.+...|+-+++.|....-
T Consensus 395 ~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 3556677777775433333 334455444322 111 2234556666653 355667777777666643211
Q ss_pred ---------hhHHHHhcCcHHHHHHHHcC---C---chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhc--CCh
Q 012813 328 ---------NKARAVRDGGVSVILKKIMD---G---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES--TCD 390 (456)
Q Consensus 328 ---------~~~~~v~~g~v~~Lv~lL~~---~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~ 390 (456)
.+...+....++.|...+.. . .-+..++.+|.|+.. ...++.|+.++... .+.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 11222233456666666652 1 233445666666531 12566777766643 246
Q ss_pred hHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC--CHHHHHHHHHHH
Q 012813 391 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGIL 443 (456)
Q Consensus 391 ~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~--~~~~k~~A~~~L 443 (456)
.+|..|+.+|..++...+.. +.+.|..+..+. +..+|-.|..+|
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~---------v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEK---------VREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHH---------HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHH---------HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 77888888888876655532 225566666553 334555554433
No 396
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=35.83 E-value=80 Score=33.99 Aligned_cols=120 Identities=10% Similarity=0.123 Sum_probs=69.4
Q ss_pred CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHH-hcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHH
Q 012813 223 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI 301 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv 301 (456)
+.+..+|+.++..+-..+..-+ ...+.. -++|.|-.+- +..+..++.+++.++..+...-+ +..+. ..+..+.
T Consensus 400 ~~~~~iQ~~~L~~lptv~e~iD--~~~vk~-~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-~~~v~--d~~lpi~ 473 (700)
T KOG2137|consen 400 DSDVQIQELALQILPTVAESID--VPFVKQ-AILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-KAAVL--DELLPIL 473 (700)
T ss_pred CcchhhHHHHHHhhhHHHHhcc--HHHHHH-HHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-HHHhH--HHHHHHH
Confidence 5567777777777766654333 222332 2566555543 34467788888888877772111 11111 2234444
Q ss_pred hccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC
Q 012813 302 DLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG 348 (456)
Q Consensus 302 ~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~ 348 (456)
+-.+..++...-..+.+..++.....+...+....++|.++-+...+
T Consensus 474 ~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 474 KCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 44455677777667777777766555544455566788888777655
No 397
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.81 E-value=4.6e+02 Score=26.72 Aligned_cols=31 Identities=29% Similarity=0.250 Sum_probs=26.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCccc
Q 012813 258 LLMDALRSGTIETRSNAAAALFTLSALDSNK 288 (456)
Q Consensus 258 ~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~ 288 (456)
.|.++|++..++=.+.|-..|.+|...++.|
T Consensus 177 lL~rLLkSn~PeDLqaANkLIK~lVkeee~k 207 (594)
T KOG1086|consen 177 LLARLLKSNHPEDLQAANKLIKTLVKEEEHK 207 (594)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999877654
No 398
>PRK05776 DNA topoisomerase I; Provisional
Probab=35.74 E-value=1e+02 Score=33.64 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=46.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhHHhh-hhhhhhhccC-CCCCCccccccchhhc-cC
Q 012813 11 PTVMPKATELKKELQKLVRLIVDDVDYRTETIDQARDTLCALKELKTKK-RSLSLKLHET-VSCPEEFKCPLSKELM-RD 87 (456)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~p~~f~Cpi~~~~m-~d 87 (456)
|.++.+ +++.++++.+..|+.|..-..++.++.+..+.+.-+....+ .......... ........||.|+..| .+
T Consensus 532 ~~l~~~--~~Ta~~E~~Ld~I~~G~~~~~~vl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~Cp~Cg~~l~~~ 609 (670)
T PRK05776 532 PDIVSV--ELTRDFEEKLEMIRTGKATREEVIEEAKETLNKLLEEFKKNKDEIGEELAKALGLIKPVGKCKICGREAYKD 609 (670)
T ss_pred cccCCH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCcCCCCCCccccC
Confidence 444433 78899999999999998877888888877776633221111 0000000011 1112246899999666 66
Q ss_pred cccC
Q 012813 88 PVIL 91 (456)
Q Consensus 88 Pv~l 91 (456)
||+.
T Consensus 610 ~~~~ 613 (670)
T PRK05776 610 GLCK 613 (670)
T ss_pred ceEE
Confidence 6654
No 399
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=35.67 E-value=89 Score=27.72 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=31.6
Q ss_pred CCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCc-ccHHHHHHHHHHHH
Q 012813 71 SCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT-PNHLIREMISQWCR 140 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~-~n~~lk~~i~~w~~ 140 (456)
.-+..|.||-|+.-+ ||+- ... .++.||.|+.+|...+-. -...|++.|..--.
T Consensus 113 ~~~~~Y~Cp~C~~ry----------tf~e-----A~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~ 167 (178)
T PRK06266 113 ENNMFFFCPNCHIRF----------TFDE-----AME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEE 167 (178)
T ss_pred cCCCEEECCCCCcEE----------eHHH-----Hhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHH
Confidence 356789999876322 2221 122 368999999998764321 12346666665433
No 400
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=35.50 E-value=27 Score=28.08 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccc
Q 012813 180 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLS 216 (456)
Q Consensus 180 ~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~ 216 (456)
..+.++.+..|+. .++....+++ .|+++.|+.+|.
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~-l~~v~sL~~LL~ 97 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVE-LGAVPSLLGLLS 97 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHH-cCCHHHHHHHHC
Confidence 4467788888888 5788888888 899999999998
No 401
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=34.79 E-value=3.1e+02 Score=27.42 Aligned_cols=127 Identities=11% Similarity=0.049 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHhccCchhh-HHHHhcCcHHHHHHHH-cCC----chHHHHHHHHHHhhCCHHH-------------HH
Q 012813 309 QSAMKDVASAIFNLCITHENK-ARAVRDGGVSVILKKI-MDG----VHVDELLAILAMLSTNHRA-------------VE 369 (456)
Q Consensus 309 ~~~~~~a~~aL~~L~~~~~~~-~~~v~~g~v~~Lv~lL-~~~----~~~~~a~~~L~~L~~~~~~-------------~~ 369 (456)
..-+..|+..|..|+..-+.. ..++ .+.+..++.-. .++ ..++.|+.++..|+..... ..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 345778889999998543211 1111 12233332211 233 4577799999999874321 12
Q ss_pred HHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHH
Q 012813 370 EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGIL 443 (456)
Q Consensus 370 ~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L 443 (456)
.+....++|-|- -..+..|-++..|++.+......-+. ..+ .+.++.+...+++++.-+...|+.++
T Consensus 304 ~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~---~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPK---EQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H---HHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH---HHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 223332333332 01122377899999999988776543 333 37889999999999999998888654
No 402
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=34.55 E-value=3.6e+02 Score=25.48 Aligned_cols=86 Identities=27% Similarity=0.214 Sum_probs=46.0
Q ss_pred ChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcc
Q 012813 225 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL 304 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL 304 (456)
++.+...++..|.+|+.--+.. .+. .| .+...+.........+ ..+|..+.+.+++.+++.++
T Consensus 56 ~~~l~~~~l~LLV~LT~P~~~~---~~~---~~--------~~~~~~~~~~~l~~~l---~~yK~afl~~~~l~~~~~~l 118 (266)
T PF04821_consen 56 DDKLFLACLRLLVNLTWPIELL---VES---QP--------KDKNQRRNIPELLKYL---QSYKEAFLDPRVLKALIRLL 118 (266)
T ss_pred chHHHHHHHHHHHHhCCCHHHh---ccC---CC--------CChHHHHHHHHHHHHH---HHHHHHHcccHHHHHHHHHH
Confidence 6788889999999987421110 000 00 0112222222222222 13455666666667666655
Q ss_pred cc-----------CChhHHHHHHHHHHHhccCch
Q 012813 305 DE-----------GHQSAMKDVASAIFNLCITHE 327 (456)
Q Consensus 305 ~~-----------~~~~~~~~a~~aL~~L~~~~~ 327 (456)
.. .+....+..+..++|+..-++
T Consensus 119 ~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~ 152 (266)
T PF04821_consen 119 LPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPD 152 (266)
T ss_pred hHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 32 144667888888888876654
No 403
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=34.53 E-value=1.9e+02 Score=28.94 Aligned_cols=72 Identities=4% Similarity=0.117 Sum_probs=57.0
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhh-cCCHHHHHHHHHHHHHHhc
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ-DGTARAKRKATGILERLKR 448 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~-~~~~~~k~~A~~~L~~l~~ 448 (456)
++..|.+-|.+. ++.+...|+.+|-.++.+.....+.-+....+...|..|+. +..+.++++...++...+.
T Consensus 46 ~lk~i~KRln~~-dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHK-DPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCC-CcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 456666666655 49999999999999998877666666666788889999988 6678899999988887764
No 404
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=34.06 E-value=2.2e+02 Score=31.75 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=49.0
Q ss_pred HHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhcc-----ChhhHHHHHHhhccHHHHHHHhhcC
Q 012813 367 AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS-----DRTKWKAMREEESTHGTISKLAQDG 431 (456)
Q Consensus 367 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~-----~~~~~~~~~~~~g~~~~L~~Ll~~~ 431 (456)
..+.+.+...++.++.++..+.++.++.+|...|+.|... .+.....-+.....+..|+..+-.+
T Consensus 182 Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~ 251 (838)
T KOG2073|consen 182 VIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLED 251 (838)
T ss_pred HHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccC
Confidence 4456667778999999999877789999999999999988 6654445555567777777765443
No 405
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=33.70 E-value=1.3e+02 Score=25.19 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=52.2
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChh---HHHHHHHHHHHHhccC
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDR---NKENCIAILHTICLSD 407 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~---~~~~A~~~L~~l~~~~ 407 (456)
++..|.+-|..+ ..+..|+.+|..+..+ +..+.++.....+..|+.++....... +++.+..+|...+...
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 455566666654 6778899999999885 456777777778899999888654344 7899988887766544
No 406
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=32.73 E-value=3.6e+02 Score=32.12 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=70.5
Q ss_pred CchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC-
Q 012813 206 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL- 284 (456)
Q Consensus 206 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~- 284 (456)
+.+..++..|. .+.+.++..|+.+|..+..-+.. +...+.+...+-.-+.+.+..+|++|+.++......
T Consensus 816 ~yLk~Il~~l~------e~~ialRtkAlKclS~ive~Dp~---vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~ 886 (1692)
T KOG1020|consen 816 PYLKLILSVLG------ENAIALRTKALKCLSMIVEADPS---VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI 886 (1692)
T ss_pred HHHHHHHHHhc------CchHHHHHHHHHHHHHHHhcChH---hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc
Confidence 46666777777 45688999999999998766642 222223444455556677888999999988765442
Q ss_pred CccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCch
Q 012813 285 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE 327 (456)
Q Consensus 285 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 327 (456)
++.-... ...+..-+.+....|++.+++.|+-+|...+
T Consensus 887 ~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 887 PELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 2221111 1233333444567799999999999997654
No 407
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.37 E-value=2.1e+02 Score=27.75 Aligned_cols=130 Identities=9% Similarity=0.148 Sum_probs=75.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc---cCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhc
Q 012813 259 LMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK---SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD 335 (456)
Q Consensus 259 Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~---~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~ 335 (456)
.+..|.+.+.+....+.-.|..|+.+.. .... +.+|-.+++-+++....+.+.|+.++..+...-.+...-
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~---e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~--- 166 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHP---ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ--- 166 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4455566666777777777777766542 1111 245667777777777788888998888886654433222
Q ss_pred CcHHHHHHHHc-----CC-chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHH
Q 012813 336 GGVSVILKKIM-----DG-VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 402 (456)
Q Consensus 336 g~v~~Lv~lL~-----~~-~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 402 (456)
....++..|. +. =+++.|-.+|..+..+-.-. -+++.|.-.+++.. ++++..++....+
T Consensus 167 -~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n-~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 167 -ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSN-PRVRAKAALCFSR 231 (334)
T ss_pred -HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhc-hhhhhhhhccccc
Confidence 2333333332 11 35778888888887652211 12445555566553 6666666554443
No 408
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=31.52 E-value=2.4e+02 Score=22.35 Aligned_cols=63 Identities=19% Similarity=0.155 Sum_probs=43.7
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHH
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL 400 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L 400 (456)
.+..|++-...+ ...+.++..|..+..++.+...+.+-|++..|-++-... ++..+...-.++
T Consensus 31 Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~-~~~~~~~id~il 95 (98)
T PF14726_consen 31 LLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNV-EPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 344444444433 568889999999999999999999999888866665543 355555544443
No 409
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=31.49 E-value=37 Score=19.58 Aligned_cols=26 Identities=8% Similarity=0.136 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc
Q 012813 311 AMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM 346 (456)
Q Consensus 311 ~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~ 346 (456)
++..|+++|+++.. .-+++.|++.|.
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 35667777777644 225677776664
No 410
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.42 E-value=6.8e+02 Score=26.82 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=66.4
Q ss_pred HHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCc
Q 012813 247 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH 326 (456)
Q Consensus 247 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 326 (456)
..++. +.+..+++-+.+.+..+|..++..|.-++..-.--....-.|.+..|.+-+-+..+.++..|+.+|..+-...
T Consensus 86 ~~~V~--~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 86 EELVA--GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred hHHHH--HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 44443 2555566666777888999999888877643211122333577777777776677889999999988764322
Q ss_pred hhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhC
Q 012813 327 ENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLST 363 (456)
Q Consensus 327 ~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~ 363 (456)
.|-.- ..+-.|+.+++++...+.=-.+|.|+..
T Consensus 164 ~neen----~~~n~l~~~vqnDPS~EVRr~allni~v 196 (885)
T COG5218 164 LNEEN----RIVNLLKDIVQNDPSDEVRRLALLNISV 196 (885)
T ss_pred CChHH----HHHHHHHHHHhcCcHHHHHHHHHHHeee
Confidence 22111 1234667777765333333334566654
No 411
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=31.12 E-value=33 Score=23.86 Aligned_cols=28 Identities=21% Similarity=0.566 Sum_probs=22.2
Q ss_pred ccccccchhhc--cCcccCC--CCccccHHHH
Q 012813 75 EFKCPLSKELM--RDPVILA--SGQTFDRPYI 102 (456)
Q Consensus 75 ~f~Cpi~~~~m--~dPv~l~--~g~~~~r~~I 102 (456)
.-.||+|++.+ .|.+++. ||-.|=|.|-
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 34699999999 6777664 8989999883
No 412
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=30.69 E-value=99 Score=26.54 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred cHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhh
Q 012813 297 LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDL 374 (456)
Q Consensus 297 i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~ 374 (456)
+..|+.+|+.+...-....+..|.|=..-.-.-..-|.++.+..+++-=... -....|+.+|..|-
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~------------ 91 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTML------------ 91 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-------------
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhcc------------
Q ss_pred Cc--HHHHHHHhhhcCChhHHHHHHHHHHH
Q 012813 375 GG--VSCMLRIIRESTCDRNKENCIAILHT 402 (456)
Q Consensus 375 g~--i~~Lv~ll~~~~~~~~~~~A~~~L~~ 402 (456)
|| |..|+.+|.+++ +.+...|+.+|.+
T Consensus 92 GGYNV~~LI~~L~~~d-~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 92 GGYNVQPLIDLLKSDD-EELAEEAAEALKN 120 (154)
T ss_dssp SSTTHHHHHHGG--G--TTTHHHHHHHHHT
T ss_pred CCCcHHHHHHHHcCCc-HHHHHHHHHHHHh
No 413
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.48 E-value=35 Score=34.76 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=49.4
Q ss_pred CCCCCccccccc-hhhccCcccCC--CCccccHHHHHHHHhcCCCCCCCCccc-ccCCCCcccHHHHHHHHHHH
Q 012813 70 VSCPEEFKCPLS-KELMRDPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQV-LSHTILTPNHLIREMISQWC 139 (456)
Q Consensus 70 ~~~p~~f~Cpi~-~~~m~dPv~l~--~g~~~~r~~I~~~~~~~~~~~P~~~~~-l~~~~l~~n~~lk~~i~~w~ 139 (456)
...|++..||++ ...|.|-.++. |..+|+-.+|.+++... .||.|..- .....+.++..++..+..-.
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~--~~~~c~~~~~~~~~~~~p~~~r~~~n~~~ 285 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISK--SMCVCGASNVLADDLLPPKTLRDTINRIL 285 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccc--cCCcchhhcccccccCCchhhHHHHHHHH
Confidence 357889999999 89999998883 78899999999999863 34444322 33456667777776665543
No 414
>PLN02195 cellulose synthase A
Probab=30.48 E-value=36 Score=38.06 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=34.1
Q ss_pred ccccchh-----hccCcccCC--CCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 77 KCPLSKE-----LMRDPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 77 ~Cpi~~~-----~m~dPv~l~--~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
.|-||++ .+-+|-+.+ ||.-.||.|.+-=-.+|+..||.|+++..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 5888886 445565544 66667999997767788899999998876
No 415
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=30.33 E-value=16 Score=31.44 Aligned_cols=20 Identities=30% Similarity=0.644 Sum_probs=17.2
Q ss_pred CccccccchhhccCcccCCC
Q 012813 74 EEFKCPLSKELMRDPVILAS 93 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~ 93 (456)
++.+||||++--.+.|+|-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46799999999999998754
No 416
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=29.88 E-value=2.4e+02 Score=24.99 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=41.5
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 377 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 377 i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
++.++++..+. +..++..|+.+|..+...+-.+ -...++.|+.|..+.++.++..|..+++.+.
T Consensus 10 l~~Il~~~~~~-~~~vr~~Al~~l~~il~qGLvn------P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 10 LKNILELCLSS-DDSVRLAALQVLELILRQGLVN------PKQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHhcCCCC------hHHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 44455555544 3777888888887766643221 1234577777777778888888888888774
No 417
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.69 E-value=28 Score=32.79 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=38.2
Q ss_pred ccccccchhhccCcccCCC----Ccccc----HHHHHHHHhcCCCCCCCCcc-cccCCCCcccHHHHHHHHHH
Q 012813 75 EFKCPLSKELMRDPVILAS----GQTFD----RPYIQRWLKAGNRTCPRTQQ-VLSHTILTPNHLIREMISQW 138 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~----g~~~~----r~~I~~~~~~~~~~~P~~~~-~l~~~~l~~n~~lk~~i~~w 138 (456)
-++|.+|.+-+.|--++.| +|.|| |..|.+-...+.-+||-... ||- -..+|..-++-.|...
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLv-gS~vPWAFMQGEIatI 339 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLV-GSNVPWAFMQGEIATI 339 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCccc-CCcccHHHhhhhHHHH
Confidence 3899999999999877754 67775 66666665554445665321 121 1234544455555443
No 418
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=29.61 E-value=2.6e+02 Score=23.95 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhh---CCCCCHHHHHH-HHHHHHHhhhhHHhhh-hhhhh-------hccCCCCCCccccccchhhc-
Q 012813 19 ELKKELQKLVRLIVD---DVDYRTETIDQ-ARDTLCALKELKTKKR-SLSLK-------LHETVSCPEEFKCPLSKELM- 85 (456)
Q Consensus 19 ~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~p~~f~Cpi~~~~m- 85 (456)
-+++++++|.....+ -.++...+.++ .|..|..+.+...-.+ +.... ......-|+.|.|--|+..+
T Consensus 44 ylkRDl~~~a~~~~~~~~~~~~~~~lie~slw~~L~~ItDkTqvEw~el~~d~~h~g~Y~sGE~~g~G~l~C~~Cg~~~~ 123 (146)
T PF07295_consen 44 YLKRDLEEFARYYEELREWLSPDLQLIEESLWDELSSITDKTQVEWAELAQDLEHHGVYHSGEVVGPGTLVCENCGHEVE 123 (146)
T ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCeecCcEecCceEecccCCCEEE
Confidence 456777777777765 23344444444 7777766665422221 11111 11334568899999998654
Q ss_pred -cCcccCC
Q 012813 86 -RDPVILA 92 (456)
Q Consensus 86 -~dPv~l~ 92 (456)
..|..||
T Consensus 124 ~~~~~~l~ 131 (146)
T PF07295_consen 124 LTHPERLP 131 (146)
T ss_pred ecCCCcCC
Confidence 5566554
No 419
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=29.54 E-value=2.8e+02 Score=31.09 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=43.2
Q ss_pred CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHH
Q 012813 307 GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIG 372 (456)
Q Consensus 307 ~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~ 372 (456)
++..+.-.++..|..|+.+..-...+|+.|+|..|+..=+-.......-.+|..+......-+.++
T Consensus 365 ~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~~~~g~s~cly~~~~~q~~mervc 430 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSETFYGLSSCLYTIGSLQGIMERVC 430 (1516)
T ss_pred ccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchhhhhhHHHHHHHHhhhhhHHHHHh
Confidence 456678889999999999988888999999988776543322222223345555555544444443
No 420
>PLN03205 ATR interacting protein; Provisional
Probab=28.48 E-value=2.2e+02 Score=28.70 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=67.6
Q ss_pred ccHHHHhccccCChhHHHHHHHHHHHhccCc-hhhHHHHh-cCc-HHHHHHHHc-------CCchHHHHHHHHHHhhC--
Q 012813 296 ALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVR-DGG-VSVILKKIM-------DGVHVDELLAILAMLST-- 363 (456)
Q Consensus 296 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~v~-~g~-v~~Lv~lL~-------~~~~~~~a~~~L~~L~~-- 363 (456)
.+++|++|..-++..+...+++.|..+..+- .++.++-. .++ .-.|++++. .+.++-.|+.++-.+..
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 4667777777777777777777776554321 22333321 111 334555543 12455556666555543
Q ss_pred CH-HHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 012813 364 NH-RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTI 403 (456)
Q Consensus 364 ~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l 403 (456)
++ -.|+.|....++..+-++|+...+-.+|..|+.+|..|
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLL 444 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLL 444 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 43 36777877778899999999865688999999988766
No 421
>PLN02189 cellulose synthase
Probab=28.47 E-value=33 Score=38.68 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=33.6
Q ss_pred cccccchhh-----ccCcccCC--CCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 76 FKCPLSKEL-----MRDPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 76 f~Cpi~~~~-----m~dPv~l~--~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
-.|.||++- +-+|-+.+ ||.-.||.|.+.=..+++..||.|+++..
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 389999975 33443333 55557999997777788899999988765
No 422
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=28.35 E-value=6.4e+02 Score=25.56 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=51.7
Q ss_pred chhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhC
Q 012813 288 KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLST 363 (456)
Q Consensus 288 ~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~ 363 (456)
.....+...+..|+.++.++|++-+......|.++-..-.+....+.......+.+.+.+. ......+.+|..+..
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~ 204 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIIN 204 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHT
T ss_pred HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHh
Confidence 4456667889999999999999999999999988876554454455444555566665532 455666666666655
No 423
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=27.17 E-value=19 Score=19.55 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=7.6
Q ss_pred cccccchhhccCc
Q 012813 76 FKCPLSKELMRDP 88 (456)
Q Consensus 76 f~Cpi~~~~m~dP 88 (456)
|.||+|+..+.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 4566666665554
No 424
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=26.54 E-value=1.1e+02 Score=26.09 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=23.0
Q ss_pred CCCccccccchhhccCcccCCCCccccHHHHHHHHh-cCCCCCCCCcccccCC
Q 012813 72 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLK-AGNRTCPRTQQVLSHT 123 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~-~~~~~~P~~~~~l~~~ 123 (456)
-...|.||-|+..+. -.-...... .+...||.|+.++...
T Consensus 96 ~~~~Y~Cp~C~~~y~------------~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 96 NNAYYKCPNCQSKYT------------FLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred CCcEEECcCCCCEee------------HHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 456899996654433 211111111 2347899999988653
No 425
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=26.35 E-value=7.3e+02 Score=25.58 Aligned_cols=80 Identities=8% Similarity=0.024 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhc-----CChhHHHHHHHHHHHHhccChhhHHHHHHhhc--cH
Q 012813 349 VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES-----TCDRNKENCIAILHTICLSDRTKWKAMREEES--TH 421 (456)
Q Consensus 349 ~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g--~~ 421 (456)
+....+-.++.||+..+-+.. ++..|..+|+.. .+..+-+-|+..|..+..+..+..-..+...- ++
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl 303 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVL 303 (464)
T ss_pred ccchhHHHHHHHHHcCccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHH
Confidence 555666777777776554433 345777788421 12344556777777666555222111221222 56
Q ss_pred HHHHHHhhcCCHH
Q 012813 422 GTISKLAQDGTAR 434 (456)
Q Consensus 422 ~~L~~Ll~~~~~~ 434 (456)
+.|...++.+++.
T Consensus 304 ~sl~~al~~~~~~ 316 (464)
T PF11864_consen 304 PSLLNALKSNSPR 316 (464)
T ss_pred HHHHHHHhCCCCe
Confidence 6666666666554
No 426
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=26.23 E-value=2.7e+02 Score=28.98 Aligned_cols=117 Identities=16% Similarity=0.253 Sum_probs=61.1
Q ss_pred hhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhH---HHhcCCCCHHHHHHHHhcC-CHHHHH
Q 012813 197 FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKK---LVAETPMVIPLLMDALRSG-TIETRS 272 (456)
Q Consensus 197 ~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~---~i~~~~~~i~~Lv~lL~~~-~~~~~~ 272 (456)
.-..|....+.|+.++..+. .+.+.+-.+.++. +- ..+.+. ......++++.|+.+|... +.+.+.
T Consensus 12 ~l~Fik~~~~~v~~llkHI~--------~~~ImDlLLklIs-~d-~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~ 81 (475)
T PF04499_consen 12 MLEFIKSQPNFVDNLLKHID--------TPAIMDLLLKLIS-TD-KPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQS 81 (475)
T ss_pred HHHHHHhCccHHHHHHHhcC--------CcHHHHHHHHHHc-cC-cccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHH
Confidence 33344433667777776665 2333333333333 11 112222 2223346999999999743 688899
Q ss_pred HHHHHHHHhccCCcc--------------chhhcccCccHHHHhcccc-CChhHHHHHHHHHHHhc
Q 012813 273 NAAAALFTLSALDSN--------------KEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLC 323 (456)
Q Consensus 273 ~aa~aL~~Ls~~~~~--------------~~~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~ 323 (456)
+|+..|..+.....+ ...+.....|..|++.+-. ........++..+..|.
T Consensus 82 naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 82 NAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred HHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 998887776432111 1223334455555554432 22445555665555554
No 427
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.16 E-value=39 Score=27.29 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=7.9
Q ss_pred ccccccchhhccC
Q 012813 75 EFKCPLSKELMRD 87 (456)
Q Consensus 75 ~f~Cpi~~~~m~d 87 (456)
-.+||-|+.-|+|
T Consensus 9 KR~Cp~CG~kFYD 21 (108)
T PF09538_consen 9 KRTCPSCGAKFYD 21 (108)
T ss_pred cccCCCCcchhcc
Confidence 3567777765544
No 428
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=26.13 E-value=87 Score=27.06 Aligned_cols=48 Identities=13% Similarity=0.258 Sum_probs=32.7
Q ss_pred CccccccchhhccCcccCCCCc-----cccHHHHHHHHhc-CCCCCCCCcccccC
Q 012813 74 EEFKCPLSKELMRDPVILASGQ-----TFDRPYIQRWLKA-GNRTCPRTQQVLSH 122 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~-----~~~r~~I~~~~~~-~~~~~P~~~~~l~~ 122 (456)
.+-.|=||.+--. +..-||.. ..=++|+++|+.. +...||.|+++...
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3456777776643 44557532 2379999999974 45679999988754
No 429
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=25.59 E-value=1.1e+02 Score=29.43 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=42.9
Q ss_pred ccCccHHHHhccccCChhHHHHHHHHHHHhccCc---------------hhhHHHHhcCcHHHHHHHHc
Q 012813 293 KSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH---------------ENKARAVRDGGVSVILKKIM 346 (456)
Q Consensus 293 ~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~---------------~~~~~~v~~g~v~~Lv~lL~ 346 (456)
+...+..+++-|...+...+-.|+.+|..++... .|...+.+.|++++|+++|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3456778888888888888889999998888653 26666778899999999985
No 430
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=25.45 E-value=5.1e+02 Score=24.63 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=37.9
Q ss_pred CccHHHHhccccCChhHHHHHHHHHHHhccCchhhH--HHHhcCcHHHHHHHH
Q 012813 295 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKA--RAVRDGGVSVILKKI 345 (456)
Q Consensus 295 G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~--~~v~~g~v~~Lv~lL 345 (456)
=++|.++.++++.++..+..++.+|..+...-.... .+.+.|..+.+-+.+
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDAL 171 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHH
Confidence 368999999999999999999999999987543222 244567666555544
No 431
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=25.44 E-value=7.9e+02 Score=25.94 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC--CHHHHHHHHHHHHHHh
Q 012813 392 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGILERLK 447 (456)
Q Consensus 392 ~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~--~~~~k~~A~~~L~~l~ 447 (456)
+|.-|+.+|..+|.+....++.+. ..+...+.+.+.+. ...+..-|...|..|.
T Consensus 314 LRDfAA~ll~~i~k~f~~~y~~L~--~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 314 LRDFAARLLAQICKNFSTLYNNLQ--PRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 566677777777776655444422 24445555544433 2234555555555444
No 432
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=25.42 E-value=1.1e+02 Score=17.74 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcC
Q 012813 311 AMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD 347 (456)
Q Consensus 311 ~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~ 347 (456)
++..|+.+|.++... .+++.|++.+.+
T Consensus 3 vR~~aa~aLg~~~~~----------~a~~~L~~~l~d 29 (30)
T smart00567 3 VRHEAAFALGQLGDE----------EAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHcCCH----------hHHHHHHHHhcC
Confidence 567788888877321 245666666554
No 433
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=25.41 E-value=3e+02 Score=20.92 Aligned_cols=67 Identities=16% Similarity=0.030 Sum_probs=46.3
Q ss_pred hCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHH---hhcCCHHHHHHHHHHHHH
Q 012813 374 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL---AQDGTARAKRKATGILER 445 (456)
Q Consensus 374 ~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~L---l~~~~~~~k~~A~~~L~~ 445 (456)
...+.++..++.+..+..+|+..+.++.++...... .+. .|+-..+.-+ ..++++.+...|-.+++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~----~i~-SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE----NIK-SGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH----HHH-hccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 345778888877666689999999999999886543 232 4765555444 345567788887777653
No 434
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=25.31 E-value=9 Score=40.47 Aligned_cols=151 Identities=13% Similarity=0.041 Sum_probs=89.1
Q ss_pred HHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhH
Q 012813 232 VITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSA 311 (456)
Q Consensus 232 a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~ 311 (456)
...++++|+.+.+|+..++...-....||-.-.-.=......|..++.||+.- .-..+.....+..+.+-+.+.+..+
T Consensus 13 ~~tv~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nlaqp--t~~e~S~~~~L~t~t~Gi~S~drfl 90 (847)
T KOG2312|consen 13 PPTVSRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLAQP--TSGESSLIKQLLTPTRGISSPDRFL 90 (847)
T ss_pred cceeeeeeccchhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccCCc--chhhhhHHHHHhhhccCCCCCCcee
Confidence 34567788889999998887654444333322222356778888888898871 1111222222333334444557777
Q ss_pred HHHHHHHHHHhccCchhhHHHHh---cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHH-HHHHHh-hCcHHHHHHHh
Q 012813 312 MKDVASAIFNLCITHENKARAVR---DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRA-VEEIGD-LGGVSCMLRII 384 (456)
Q Consensus 312 ~~~a~~aL~~L~~~~~~~~~~v~---~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~-~~~i~~-~g~i~~Lv~ll 384 (456)
+-.++..|.+||....|-..+.+ .......+..+.-. -+.-..+..|..|..-.+. ...|.+ .+.|..||.+.
T Consensus 91 imr~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 91 IMRALEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLS 170 (847)
T ss_pred EeeccccCcccccCCCCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccc
Confidence 88899999999998887666644 35566666666533 4455566666666553221 222222 25566666554
No 435
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=25.10 E-value=47 Score=32.24 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=36.9
Q ss_pred CccccccchhhccCcccCCCCccccHHHHHHH--HhcCCCCCCCCccccc
Q 012813 74 EEFKCPLSKELMRDPVILASGQTFDRPYIQRW--LKAGNRTCPRTQQVLS 121 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~--~~~~~~~~P~~~~~l~ 121 (456)
++-.|-||-+-.+---++||||.+|..|--+- +-. ...||+|+..-.
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~-~K~C~~CrTE~e 108 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM-QKGCPLCRTETE 108 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh-ccCCCccccccc
Confidence 46789999988888789999999999887543 333 567999987643
No 436
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=25.05 E-value=8.2e+02 Score=25.69 Aligned_cols=187 Identities=19% Similarity=0.107 Sum_probs=98.2
Q ss_pred CHHHHHHHHh-cCCHHHHHHHHHHHHHh--ccCC--c-------cchhhcccCccHHHHhcccc----C----ChhHHHH
Q 012813 255 VIPLLMDALR-SGTIETRSNAAAALFTL--SALD--S-------NKEVIGKSGALKPLIDLLDE----G----HQSAMKD 314 (456)
Q Consensus 255 ~i~~Lv~lL~-~~~~~~~~~aa~aL~~L--s~~~--~-------~~~~i~~~G~i~~Lv~lL~~----~----~~~~~~~ 314 (456)
+|..+..++. +|....+.++++.|..| +... . +-..+-+...|.+.++.+-. + .+...+-
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Confidence 5666666665 45678899999999775 2211 1 22234445666666666643 2 2345555
Q ss_pred HHHHHHHhccCc----hhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCCh
Q 012813 315 VASAIFNLCITH----ENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCD 390 (456)
Q Consensus 315 a~~aL~~L~~~~----~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 390 (456)
++..|.....+. -|-.. .+.+|+++=...+++..|+.+-..=+....+...+...=..|.++.-+. .
T Consensus 178 vl~~ia~vgeS~qyPPVNWaa-----lLsPLMRlnfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs----~ 248 (589)
T PF11229_consen 178 VLKPIATVGESYQYPPVNWAA-----LLSPLMRLNFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLS----V 248 (589)
T ss_pred HHHHhhhcCCCCCCCCccHHH-----HhhHHHhccccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhh----H
Confidence 555555443222 13332 4567777633447777787665555555666666666655666665554 3
Q ss_pred hHHHHHHHHHHHHhcc-ChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 012813 391 RNKENCIAILHTICLS-DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 451 (456)
Q Consensus 391 ~~~~~A~~~L~~l~~~-~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~ 451 (456)
..+.+-..-+.....+ ++++.+.+++ .-++..+.....-.++.....|..-|..--+.+.
T Consensus 249 ~tk~~L~~Sl~~wmkhVsedqiQ~Fve-~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~ 309 (589)
T PF11229_consen 249 NTKKYLFESLSLWMKHVSEDQIQAFVE-NLMVQQFKAASRPSNPELCQSALQGLSQAMKLPS 309 (589)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCC
Confidence 3444444444443333 3344444443 1233333333333455666555555554434333
No 437
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=25.02 E-value=2.9e+02 Score=20.45 Aligned_cols=54 Identities=11% Similarity=0.187 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 392 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 392 ~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
..+.++.+|..|-..+... .++...++-..+-.|-.+.++.++..|..+++.=.
T Consensus 19 ~~~~~~~~L~~L~~~~it~--~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk 72 (76)
T cd00183 19 EVSRLLDLLRLLKKLPLTV--EILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWK 72 (76)
T ss_pred CHHHHHHHHHHHhcCCCCH--HHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4556778888887766443 66666555566666777788999999998887543
No 438
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=24.98 E-value=1.1e+02 Score=20.22 Aligned_cols=29 Identities=17% Similarity=0.448 Sum_probs=22.9
Q ss_pred hccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 418 ESTHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 418 ~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
.++-..|-+++..|++..+..|..+|..|
T Consensus 16 e~Ar~lL~evl~~~~~~q~~eA~~LL~~l 44 (44)
T TIGR03504 16 EGARELLEEVIEEGDEAQRQEARALLAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 35666777788889999999999988653
No 439
>COG1773 Rubredoxin [Energy production and conversion]
Probab=24.83 E-value=35 Score=23.78 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=12.0
Q ss_pred CCCCCccccccchh
Q 012813 70 VSCPEEFKCPLSKE 83 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~ 83 (456)
.++|+++.||.|+-
T Consensus 31 edlPd~w~CP~Cg~ 44 (55)
T COG1773 31 EDLPDDWVCPECGV 44 (55)
T ss_pred hhCCCccCCCCCCC
Confidence 35999999999984
No 440
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=24.73 E-value=42 Score=27.77 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=15.0
Q ss_pred ccccccchhhcc----CcccCC-CCccccHH
Q 012813 75 EFKCPLSKELMR----DPVILA-SGQTFDRP 100 (456)
Q Consensus 75 ~f~Cpi~~~~m~----dPv~l~-~g~~~~r~ 100 (456)
..+||-|+.-|+ +|++-| ||..|...
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCccCcc
Confidence 467888886664 455544 55554333
No 441
>PHA02862 5L protein; Provisional
Probab=24.40 E-value=62 Score=27.43 Aligned_cols=55 Identities=11% Similarity=0.259 Sum_probs=34.1
Q ss_pred cccchhhccCcccCCCCc-----cccHHHHHHHHhc-CCCCCCCCcccccCCCCcccHHHHHHHHHHH
Q 012813 78 CPLSKELMRDPVILASGQ-----TFDRPYIQRWLKA-GNRTCPRTQQVLSHTILTPNHLIREMISQWC 139 (456)
Q Consensus 78 Cpi~~~~m~dPv~l~~g~-----~~~r~~I~~~~~~-~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~ 139 (456)
|=||.+-=.+. .-||.. -.-++|+++|+.. +...||.|+.+...... .+-..+|.
T Consensus 5 CWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~------yKpf~kW~ 65 (156)
T PHA02862 5 CWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT------YVSFKKWN 65 (156)
T ss_pred EEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc------cccHHHhh
Confidence 55555543333 456522 2379999999974 35679999998754321 23466774
No 442
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=23.64 E-value=2e+02 Score=27.98 Aligned_cols=44 Identities=16% Similarity=0.403 Sum_probs=28.8
Q ss_pred CccccccchhhccCccc-C--CCCccc--cHHHHHHHHhcCCCCCCCCcc
Q 012813 74 EEFKCPLSKELMRDPVI-L--ASGQTF--DRPYIQRWLKAGNRTCPRTQQ 118 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~-l--~~g~~~--~r~~I~~~~~~~~~~~P~~~~ 118 (456)
..-+||+|+..=.--|+ + ..|..| |--|=.+|--. ...||+|+.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-CccCCCCCC
Confidence 35789999986221122 1 357666 77776777654 467999986
No 443
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.61 E-value=57 Score=32.83 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=24.2
Q ss_pred ccccccch-hhccCcc---cCCCCccccHHHHHHHHh
Q 012813 75 EFKCPLSK-ELMRDPV---ILASGQTFDRPYIQRWLK 107 (456)
Q Consensus 75 ~f~Cpi~~-~~m~dPv---~l~~g~~~~r~~I~~~~~ 107 (456)
..+|+||. +.+...- +.-|||-||..|..+|+.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 46799998 4333212 445999999999999987
No 444
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=23.43 E-value=69 Score=36.68 Aligned_cols=44 Identities=32% Similarity=0.656 Sum_probs=30.2
Q ss_pred cCCCCCCccccccch--hhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCC
Q 012813 68 ETVSCPEEFKCPLSK--ELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 123 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~--~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 123 (456)
+--+.|.|+.||=|+ +...|+ .+-+| ||- -+.+||.|+.|+..+
T Consensus 907 EVNPL~PHY~Cp~Cky~Ef~~d~-svgsG--fDL---------pdK~CPkCg~pl~kD 952 (1444)
T COG2176 907 EVNPLPPHYLCPECKYSEFIDDG-SVGSG--FDL---------PDKDCPKCGTPLKKD 952 (1444)
T ss_pred ccCCCCccccCCCCceeeeecCC-CcCCC--CCC---------CCCCCCcCCCccccC
Confidence 444689999999997 566666 33333 321 156899999998644
No 445
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=23.08 E-value=1e+03 Score=26.04 Aligned_cols=62 Identities=10% Similarity=-0.012 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChh
Q 012813 348 GVHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 409 (456)
Q Consensus 348 ~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~ 409 (456)
+..+-.++.+|..+... +.....|.++..+..|++.|+.+.+..+-..|+.+|..|-=.-+.
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 35667788888888874 677778889999999999999877677777787777766544443
No 446
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=22.97 E-value=2.5e+02 Score=18.96 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=30.3
Q ss_pred HHHHhccChhhHHHHHHhhccHHHHHHHhhc-CCHHHHHHHHHHHHHH
Q 012813 400 LHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERL 446 (456)
Q Consensus 400 L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~-~~~~~k~~A~~~L~~l 446 (456)
|..|...+.. ...+.+.++-..+..|..+ .++.+++.|..++..=
T Consensus 3 L~~L~~l~it--~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 3 LKVLEKLPIT--VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHCSS-S--HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHhhcCCCC--HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4444444433 3666666777788888877 7899999999988753
No 447
>PRK13908 putative recombination protein RecO; Provisional
Probab=22.80 E-value=1.2e+02 Score=27.25 Aligned_cols=74 Identities=15% Similarity=0.252 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHhhhhhhhhhccCCCCCCccccccchhhccCcccC-----C----C--CccccHHHHH
Q 012813 35 VDYRTETIDQARDTLCALKELKTKKRSLSLKLHETVSCPEEFKCPLSKELMRDPVIL-----A----S--GQTFDRPYIQ 103 (456)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~Cpi~~~~m~dPv~l-----~----~--g~~~~r~~I~ 103 (456)
++|=-++.+++...+.+-.-....-.....-.+-.+-...+|.|-+|.+...+.+.+ | | |.+|++.-|.
T Consensus 98 DsFYf~lLe~~a~~~~kQnpKR~iie~Y~~LLefEGRLh~~~~Cf~Ce~~i~~~iaL~RaflpaH~~C~~~~~f~~~ki~ 177 (204)
T PRK13908 98 DSFYFDLLDDCAKKLEKQNPKRVIIESYAKLLEFEGRLHKDFICFLCDEKIENEIALARAFLPAHPSCIKSKSFELEKIK 177 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCcHhHHHHHHHHHHHhccccCCCCeEEecCCccccchHHHHhhcccChhhhcccccCHHHHH
Confidence 444444555555544431111111112222233445588899999999998888754 2 2 5567888888
Q ss_pred HHHhc
Q 012813 104 RWLKA 108 (456)
Q Consensus 104 ~~~~~ 108 (456)
.|+..
T Consensus 178 ~~f~~ 182 (204)
T PRK13908 178 EFFRT 182 (204)
T ss_pred HHHHh
Confidence 88765
No 448
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=22.48 E-value=47 Score=25.73 Aligned_cols=21 Identities=14% Similarity=0.494 Sum_probs=17.4
Q ss_pred cccCCCCccccHHHHHHHHhc
Q 012813 88 PVILASGQTFDRPYIQRWLKA 108 (456)
Q Consensus 88 Pv~l~~g~~~~r~~I~~~~~~ 108 (456)
-|++|.|+.|++..|.+-+.+
T Consensus 9 KVtIp~G~KYdK~wLl~~iq~ 29 (88)
T PF09162_consen 9 KVTIPYGKKYDKDWLLNSIQS 29 (88)
T ss_dssp EEEETTGGGS-HHHHHHHHHH
T ss_pred EEEecCCcccCHHHHHHHHHH
Confidence 378999999999999888865
No 449
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=20.97 E-value=33 Score=18.32 Aligned_cols=11 Identities=36% Similarity=1.053 Sum_probs=4.4
Q ss_pred cccccchhhcc
Q 012813 76 FKCPLSKELMR 86 (456)
Q Consensus 76 f~Cpi~~~~m~ 86 (456)
|.||+|+..+.
T Consensus 1 ~~C~~C~~~~~ 11 (24)
T PF13894_consen 1 FQCPICGKSFR 11 (24)
T ss_dssp EE-SSTS-EES
T ss_pred CCCcCCCCcCC
Confidence 34555554443
No 450
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=20.93 E-value=86 Score=32.44 Aligned_cols=61 Identities=26% Similarity=0.345 Sum_probs=50.9
Q ss_pred CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 012813 223 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 283 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~ 283 (456)
..+++++.+|..++.+++.+.++|.....++..-..+++++..+.+++-+.++.++..+-.
T Consensus 339 ~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 339 HKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred ccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 4578999999999999999999988777776666778888888888888888888877654
No 451
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=20.63 E-value=60 Score=23.46 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=9.0
Q ss_pred ccHHHHHHHHhc
Q 012813 97 FDRPYIQRWLKA 108 (456)
Q Consensus 97 ~~r~~I~~~~~~ 108 (456)
|||.|+.+|...
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999874
No 452
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=20.40 E-value=8.1e+02 Score=23.95 Aligned_cols=194 Identities=10% Similarity=0.058 Sum_probs=118.9
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcc-----cCccHHHHhccccCChhHHHHHHHHHHHhccCc
Q 012813 253 PMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGK-----SGALKPLIDLLDEGHQSAMKDVASAIFNLCITH 326 (456)
Q Consensus 253 ~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~-----~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 326 (456)
.|..+.|+..+.....+.+..++....++-... ..+...++ ...+..|+.--.. .++..-.+-..|......+
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe 156 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHE 156 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhH
Confidence 358888999999999999999988777775432 22222221 2333333333111 1333333333344444444
Q ss_pred hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhhC---cHHH-HHHHhhhcCChhHHHHHHHH
Q 012813 327 ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLG---GVSC-MLRIIRESTCDRNKENCIAI 399 (456)
Q Consensus 327 ~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g---~i~~-Lv~ll~~~~~~~~~~~A~~~ 399 (456)
.-..-+....-.......++.+ ++...|..+...+.. +.....++...+ ..+. --.++.++ +-.++..+..+
T Consensus 157 ~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvtkrqs~kl 235 (342)
T KOG1566|consen 157 FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVTKRQSLKL 235 (342)
T ss_pred HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceehHHHHHHh
Confidence 4445555666677777777766 667777777777765 444455555443 2344 44566654 47889999999
Q ss_pred HHHHhccCh--hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 400 LHTICLSDR--TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 400 L~~l~~~~~--~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
|..+-...+ .....-+....-...++.|++..+..+|-.|=.+.+-+-+
T Consensus 236 lg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 236 LGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhc
Confidence 998866444 2333445455677888899988887888777666665543
No 453
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.25 E-value=5.3e+02 Score=21.78 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred hccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHH
Q 012813 281 LSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAM 360 (456)
Q Consensus 281 Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~ 360 (456)
++.....+..-.....-..+..+|.+++.+++..|+.+|..--...=..-+ +.|-.++.+...++.-....
T Consensus 3 fakf~npk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~-------d~L~~Lldd~~frdeL~~f~-- 73 (141)
T PF07539_consen 3 FAKFKNPKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYK-------DNLENLLDDKTFRDELTTFN-- 73 (141)
T ss_pred HhhcCCcHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHH-------HHHHHHcCcchHHHHHHhhc--
Q ss_pred hhCCHHHHHHHHhhCcHHHHHHHhhh------cCChhHHHHHHHHHHHHhccChhhHHHHHH
Q 012813 361 LSTNHRAVEEIGDLGGVSCMLRIIRE------STCDRNKENCIAILHTICLSDRTKWKAMRE 416 (456)
Q Consensus 361 L~~~~~~~~~i~~~g~i~~Lv~ll~~------~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~ 416 (456)
+.......+.--+.+.+|.++.+|-. +........=..+|..|+....+....++.
T Consensus 74 ~~~~~~~I~~ehR~~l~pvvlRILygk~~~~~~~~~~~~~rR~aIL~~L~~l~~~El~~Fl~ 135 (141)
T PF07539_consen 74 LSDESSVIEEEHRPELMPVVLRILYGKMQSRKGSGSKKASRRAAILRFLAGLSEEELGLFLD 135 (141)
T ss_pred ccCCcCCCCHHHHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHhCCCHHHHHHHHH
Done!