Query 012813
Match_columns 456
No_of_seqs 371 out of 2530
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 16:44:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 2.3E-32 7.9E-37 269.3 20.8 271 178-452 47-338 (354)
2 3nmz_A APC variant protein; pr 100.0 3.6E-31 1.2E-35 268.4 20.3 268 180-451 165-453 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 1.6E-30 5.4E-35 266.3 23.4 278 165-451 3-363 (457)
4 3l6x_A Catenin delta-1; cateni 100.0 9.4E-30 3.2E-34 263.7 24.4 280 163-451 47-387 (584)
5 3now_A UNC-45 protein, SD10334 100.0 6.3E-28 2.2E-32 258.0 27.3 280 161-449 418-738 (810)
6 3nmw_A APC variant protein; AR 100.0 5E-29 1.7E-33 245.5 16.5 250 155-412 64-341 (354)
7 3nmz_A APC variant protein; pr 100.0 3.3E-28 1.1E-32 246.8 21.9 287 159-448 65-408 (458)
8 1xm9_A Plakophilin 1; armadill 100.0 3.9E-28 1.3E-32 248.5 22.0 287 159-455 39-456 (457)
9 3ul1_B Importin subunit alpha- 100.0 6.8E-27 2.3E-31 242.7 24.7 280 160-449 96-388 (510)
10 3l6x_A Catenin delta-1; cateni 100.0 2.7E-27 9.1E-32 245.4 20.2 288 156-453 82-481 (584)
11 3tpo_A Importin subunit alpha- 99.9 3.1E-26 1E-30 238.9 26.4 280 160-449 115-407 (529)
12 3tpo_A Importin subunit alpha- 99.9 1.2E-25 4.3E-30 234.3 24.8 288 159-450 157-451 (529)
13 3now_A UNC-45 protein, SD10334 99.9 2.9E-26 9.8E-31 245.2 20.0 279 161-449 492-783 (810)
14 4hxt_A De novo protein OR329; 99.9 2.7E-25 9.3E-30 207.9 23.2 239 206-453 2-246 (252)
15 4b8j_A Importin subunit alpha- 99.9 6.6E-25 2.2E-29 228.6 28.0 280 161-449 114-401 (528)
16 3ul1_B Importin subunit alpha- 99.9 1.6E-25 5.4E-30 232.4 22.2 290 158-450 137-432 (510)
17 4hxt_A De novo protein OR329; 99.9 1.3E-24 4.5E-29 203.3 21.4 237 164-409 2-245 (252)
18 4db8_A Armadillo-repeat protei 99.9 7.2E-25 2.5E-29 205.7 18.9 236 205-449 11-252 (252)
19 4db8_A Armadillo-repeat protei 99.9 1.1E-24 3.6E-29 204.6 19.5 234 163-405 11-251 (252)
20 1wa5_B Importin alpha subunit; 99.9 7.1E-24 2.4E-28 221.0 26.8 279 161-449 127-413 (530)
21 4b8j_A Importin subunit alpha- 99.9 7.8E-24 2.7E-28 220.5 26.3 278 163-449 73-359 (528)
22 2jdq_A Importin alpha-1 subuni 99.9 8E-23 2.7E-27 207.7 29.1 275 164-449 64-348 (450)
23 1wa5_B Importin alpha subunit; 99.9 5.3E-23 1.8E-27 214.4 27.1 278 163-449 86-371 (530)
24 2jdq_A Importin alpha-1 subuni 99.9 9E-23 3.1E-27 207.4 27.7 279 162-450 105-392 (450)
25 1jdh_A Beta-catenin; beta-cate 99.9 1.3E-23 4.5E-28 218.1 20.0 277 162-450 15-297 (529)
26 2z6h_A Catenin beta-1, beta-ca 99.9 2.3E-23 8E-28 222.2 21.6 276 162-449 12-293 (644)
27 3tt9_A Plakophilin-2; cell adh 99.9 5E-24 1.7E-28 196.4 12.2 193 206-406 8-230 (233)
28 1jdh_A Beta-catenin; beta-cate 99.9 2.7E-22 9.2E-27 208.2 25.0 281 160-450 97-387 (529)
29 2z6h_A Catenin beta-1, beta-ca 99.9 7.4E-22 2.5E-26 210.6 25.8 281 160-450 94-384 (644)
30 4db6_A Armadillo repeat protei 99.9 4E-22 1.4E-26 181.8 20.3 195 253-449 11-210 (210)
31 3tt9_A Plakophilin-2; cell adh 99.9 5E-23 1.7E-27 189.7 12.7 195 254-449 8-230 (233)
32 2z6g_A B-catenin; FULL-length, 99.9 3E-22 1E-26 217.7 21.0 276 163-450 149-430 (780)
33 2z6g_A B-catenin; FULL-length, 99.9 5.9E-22 2E-26 215.4 21.9 271 164-450 115-391 (780)
34 3opb_A SWI5-dependent HO expre 99.9 1.4E-21 4.8E-26 205.5 21.0 281 161-450 373-730 (778)
35 3m62_A Ubiquitin conjugation f 99.9 4.7E-23 1.6E-27 218.6 9.8 120 24-144 823-960 (968)
36 4db6_A Armadillo repeat protei 99.9 1.8E-21 6E-26 177.5 17.3 193 205-405 11-209 (210)
37 2kr4_A Ubiquitin conjugation f 99.9 3.9E-22 1.3E-26 154.4 5.9 76 67-143 6-81 (85)
38 1wgm_A Ubiquitin conjugation f 99.8 7.6E-22 2.6E-26 156.6 7.0 78 68-146 15-93 (98)
39 2kre_A Ubiquitin conjugation f 99.8 4.9E-22 1.7E-26 158.3 5.2 77 67-144 21-97 (100)
40 3opb_A SWI5-dependent HO expre 99.8 3.8E-20 1.3E-24 194.6 21.1 275 165-447 335-682 (778)
41 2f42_A STIP1 homology and U-bo 99.8 3.3E-21 1.1E-25 168.4 8.6 78 68-145 99-176 (179)
42 1xqr_A HSPBP1 protein; armadil 99.8 3.8E-19 1.3E-23 170.6 18.0 221 226-448 54-287 (296)
43 1xqr_A HSPBP1 protein; armadil 99.8 1.1E-18 3.9E-23 167.3 19.0 181 267-449 53-239 (296)
44 1t1h_A Gspef-atpub14, armadill 99.7 1E-18 3.4E-23 133.3 5.5 76 70-145 3-78 (78)
45 2yu4_A E3 SUMO-protein ligase 99.7 1.7E-18 6E-23 136.6 4.1 73 71-143 3-84 (94)
46 2c2l_A CHIP, carboxy terminus 99.7 2E-18 6.9E-23 164.9 5.1 78 68-145 201-278 (281)
47 2bay_A PRE-mRNA splicing facto 99.6 6.5E-17 2.2E-21 116.0 1.8 54 75-129 3-57 (61)
48 3grl_A General vesicular trans 99.6 7E-14 2.4E-18 143.7 20.7 277 163-448 20-342 (651)
49 3ztg_A E3 ubiquitin-protein li 99.5 1E-14 3.4E-19 114.7 8.4 78 68-145 6-86 (92)
50 3fl2_A E3 ubiquitin-protein li 99.4 1E-13 3.5E-18 115.3 4.4 69 72-140 49-118 (124)
51 3htk_C E3 SUMO-protein ligase 99.4 1.1E-13 3.8E-18 126.3 3.3 70 72-141 178-251 (267)
52 1z6u_A NP95-like ring finger p 99.4 2.5E-13 8.5E-18 116.4 4.4 68 72-139 75-143 (150)
53 3grl_A General vesicular trans 99.3 7.5E-11 2.6E-15 121.3 21.9 248 162-415 120-404 (651)
54 2y43_A E3 ubiquitin-protein li 99.3 1.4E-12 4.7E-17 103.9 4.9 70 72-142 19-89 (99)
55 3ltm_A Alpha-REP4; protein eng 99.3 1.6E-10 5.6E-15 104.7 18.4 191 205-455 18-210 (211)
56 2ckl_A Polycomb group ring fin 99.2 3.4E-12 1.1E-16 103.3 4.1 67 72-139 12-83 (108)
57 3hct_A TNF receptor-associated 99.2 4.2E-12 1.5E-16 104.4 3.6 69 70-138 13-81 (118)
58 3lrq_A E3 ubiquitin-protein li 99.2 5.6E-12 1.9E-16 100.4 4.0 69 72-140 19-88 (100)
59 2egp_A Tripartite motif-contai 99.2 4.7E-13 1.6E-17 101.9 -2.3 64 70-133 7-76 (79)
60 2csy_A Zinc finger protein 183 99.2 1.6E-11 5.5E-16 93.8 5.9 65 69-135 9-73 (81)
61 2ecy_A TNF receptor-associated 99.2 1.4E-11 4.9E-16 90.1 5.2 56 70-125 10-65 (66)
62 2yur_A Retinoblastoma-binding 99.2 1.2E-11 4.1E-16 92.7 4.4 61 68-128 8-71 (74)
63 2ecw_A Tripartite motif-contai 99.2 2.7E-12 9.3E-17 99.0 0.8 64 70-133 14-82 (85)
64 2djb_A Polycomb group ring fin 99.2 2.2E-11 7.4E-16 90.8 5.6 60 68-128 8-68 (72)
65 1jm7_B BARD1, BRCA1-associated 99.2 6.8E-12 2.3E-16 103.0 3.0 67 73-142 20-87 (117)
66 3l11_A E3 ubiquitin-protein li 99.2 3.8E-12 1.3E-16 104.3 1.4 69 71-139 11-86 (115)
67 2ckl_B Ubiquitin ligase protei 99.2 8.3E-12 2.8E-16 109.1 3.5 69 72-140 51-121 (165)
68 1oyz_A Hypothetical protein YI 99.2 1.1E-09 3.7E-14 103.8 18.4 224 163-447 22-249 (280)
69 4ayc_A E3 ubiquitin-protein li 99.2 4.6E-11 1.6E-15 101.0 7.7 62 74-138 52-113 (138)
70 3ltj_A Alpharep-4; protein eng 99.2 1.6E-09 5.4E-14 97.3 17.9 184 205-448 13-198 (201)
71 2ecv_A Tripartite motif-contai 99.2 4E-12 1.4E-16 98.1 0.3 64 70-133 14-82 (85)
72 3ltm_A Alpha-REP4; protein eng 99.1 1.8E-09 6E-14 97.8 17.5 187 163-409 18-207 (211)
73 1jm7_A BRCA1, breast cancer ty 99.1 1.8E-11 6.1E-16 99.7 3.4 66 74-139 20-87 (112)
74 1g25_A CDK-activating kinase a 99.1 9.7E-11 3.3E-15 85.3 4.7 55 74-128 2-61 (65)
75 2ysl_A Tripartite motif-contai 99.1 9.4E-11 3.2E-15 87.5 4.5 56 70-125 15-72 (73)
76 3ltj_A Alpharep-4; protein eng 99.1 5.9E-09 2E-13 93.5 17.3 183 163-405 13-198 (201)
77 3hcs_A TNF receptor-associated 99.1 7.6E-11 2.6E-15 103.5 4.1 68 70-137 13-80 (170)
78 3knv_A TNF receptor-associated 99.0 3.7E-11 1.3E-15 101.7 1.2 66 71-136 27-101 (141)
79 1rmd_A RAG1; V(D)J recombinati 99.0 1.3E-10 4.4E-15 95.2 3.9 66 72-137 20-86 (116)
80 4fdd_A Transportin-1; heat rep 99.0 6.1E-09 2.1E-13 114.2 17.6 271 164-449 128-430 (852)
81 4gmo_A Putative uncharacterize 99.0 2.3E-09 8E-14 114.6 13.6 191 255-447 36-257 (684)
82 1oyz_A Hypothetical protein YI 99.0 1.3E-08 4.3E-13 96.4 16.9 197 205-448 22-221 (280)
83 2ysj_A Tripartite motif-contai 99.0 3.9E-10 1.3E-14 81.5 4.8 47 70-116 15-63 (63)
84 3ng2_A RNF4, snurf, ring finge 99.0 2.6E-10 8.9E-15 84.6 3.6 57 71-128 6-69 (71)
85 4fdd_A Transportin-1; heat rep 98.9 6.1E-09 2.1E-13 114.2 14.1 270 165-450 175-473 (852)
86 2d8t_A Dactylidin, ring finger 98.9 1.7E-10 5.7E-15 85.7 0.8 52 71-123 11-62 (71)
87 2ct2_A Tripartite motif protei 98.9 1.1E-09 3.6E-14 84.9 5.3 56 68-123 8-69 (88)
88 2ecj_A Tripartite motif-contai 98.9 1.5E-09 5.3E-14 76.8 4.7 47 70-116 10-58 (58)
89 4gmo_A Putative uncharacterize 98.9 3.2E-09 1.1E-13 113.5 9.0 191 207-405 35-258 (684)
90 2xeu_A Ring finger protein 4; 98.9 6E-10 2.1E-14 80.7 2.1 54 74-128 2-62 (64)
91 1e4u_A Transcriptional repress 98.8 3.7E-09 1.3E-13 79.5 5.3 55 71-125 7-65 (78)
92 2ea6_A Ring finger protein 4; 98.8 1.8E-09 6.3E-14 79.4 3.6 52 70-122 10-68 (69)
93 2ect_A Ring finger protein 126 98.8 3.6E-09 1.2E-13 79.9 3.8 58 70-128 10-70 (78)
94 1ibr_B P95, importin beta-1 su 98.8 6.9E-08 2.4E-12 97.4 14.3 273 164-450 128-439 (462)
95 2vgl_B AP-2 complex subunit be 98.7 2.1E-07 7.1E-12 97.8 16.1 255 165-449 50-312 (591)
96 1b3u_A Protein (protein phosph 98.7 2.1E-07 7E-12 97.0 15.8 248 177-448 338-587 (588)
97 4ap4_A E3 ubiquitin ligase RNF 98.6 7.9E-09 2.7E-13 86.5 2.4 56 72-128 4-66 (133)
98 1chc_A Equine herpes virus-1 r 98.6 1.3E-08 4.5E-13 74.5 3.0 48 74-122 4-52 (68)
99 1b3u_A Protein (protein phosph 98.6 3.2E-07 1.1E-11 95.5 14.7 263 166-449 283-549 (588)
100 2vgl_B AP-2 complex subunit be 98.6 1.2E-06 4.2E-11 91.9 19.1 262 165-448 122-419 (591)
101 2kiz_A E3 ubiquitin-protein li 98.6 3.5E-08 1.2E-12 72.5 4.6 54 69-123 8-64 (69)
102 2ecn_A Ring finger protein 141 98.6 7.2E-09 2.5E-13 76.4 0.8 54 69-124 9-62 (70)
103 1bor_A Transcription factor PM 98.6 8.8E-09 3E-13 72.3 1.2 46 73-122 4-49 (56)
104 2ep4_A Ring finger protein 24; 98.6 4.5E-08 1.5E-12 73.0 5.0 52 70-122 10-64 (74)
105 2ecm_A Ring finger and CHY zin 98.6 1.9E-08 6.6E-13 70.2 2.7 47 74-121 4-54 (55)
106 2l0b_A E3 ubiquitin-protein li 98.6 3.4E-08 1.2E-12 76.8 3.7 51 71-122 36-89 (91)
107 1w63_A Adapter-related protein 98.5 4.5E-06 1.6E-10 88.0 20.6 253 166-449 72-380 (618)
108 1iym_A EL5; ring-H2 finger, ub 98.5 4E-08 1.4E-12 68.6 2.6 48 73-121 3-54 (55)
109 1v87_A Deltex protein 2; ring- 98.5 1.1E-07 3.7E-12 77.3 4.9 52 71-122 21-94 (114)
110 1x4j_A Ring finger protein 38; 98.5 5.2E-08 1.8E-12 72.8 2.7 50 72-122 20-72 (75)
111 4ic3_A E3 ubiquitin-protein li 98.4 3.1E-08 1.1E-12 73.8 0.8 44 74-122 23-67 (74)
112 2y1n_A E3 ubiquitin-protein li 98.4 6E-08 2.1E-12 94.4 2.8 50 75-124 332-381 (389)
113 2bpt_A Importin beta-1 subunit 98.4 1.7E-06 6E-11 94.3 13.6 258 176-449 382-669 (861)
114 1w63_A Adapter-related protein 98.3 8.4E-05 2.9E-09 78.3 24.4 249 165-449 143-415 (618)
115 2ecg_A Baculoviral IAP repeat- 98.3 2.2E-07 7.4E-12 69.4 2.4 44 74-122 24-68 (75)
116 4ap4_A E3 ubiquitin ligase RNF 98.3 1.4E-07 4.7E-12 78.8 1.0 56 72-128 69-131 (133)
117 2qk2_A LP04448P; mini spindles 98.3 1E-05 3.6E-10 74.5 13.8 184 257-450 18-207 (242)
118 1qgr_A Protein (importin beta 98.3 4.1E-06 1.4E-10 91.5 12.9 265 170-449 372-680 (876)
119 1qgr_A Protein (importin beta 98.3 1.3E-05 4.5E-10 87.5 16.8 269 165-450 173-481 (876)
120 1u6g_C TIP120 protein, CAND1; 98.3 1.6E-06 5.5E-11 98.8 9.2 270 164-449 6-285 (1230)
121 1ibr_B P95, importin beta-1 su 98.2 1.2E-05 4.1E-10 80.8 14.5 264 168-449 94-396 (462)
122 2bpt_A Importin beta-1 subunit 98.2 1.7E-05 5.8E-10 86.4 15.5 267 166-449 413-712 (861)
123 2vje_A E3 ubiquitin-protein li 98.2 7.8E-07 2.7E-11 64.1 2.8 48 73-121 6-56 (64)
124 2ecl_A Ring-box protein 2; RNF 98.1 6.7E-07 2.3E-11 67.8 1.7 49 74-123 14-77 (81)
125 1wim_A KIAA0161 protein; ring 98.1 5.3E-07 1.8E-11 70.4 1.0 51 73-123 3-67 (94)
126 2vje_B MDM4 protein; proto-onc 98.1 1.2E-06 4E-11 62.9 2.6 46 75-121 7-55 (63)
127 2yho_A E3 ubiquitin-protein li 98.0 1.1E-06 3.9E-11 66.1 0.1 44 74-122 17-61 (79)
128 2qk1_A Protein STU2; STU2P, XM 97.9 9.3E-05 3.2E-09 68.6 12.9 191 259-452 21-224 (249)
129 3t6p_A Baculoviral IAP repeat- 97.9 1.2E-06 4.1E-11 84.8 -0.1 45 73-122 293-338 (345)
130 1u6g_C TIP120 protein, CAND1; 97.9 6.4E-05 2.2E-09 85.6 13.8 227 163-409 47-288 (1230)
131 3dpl_R Ring-box protein 1; ubi 97.9 6.2E-06 2.1E-10 65.6 3.5 46 75-121 37-100 (106)
132 3b2a_A TON_1937, putative unch 97.9 0.00019 6.4E-09 64.3 12.9 184 163-365 32-220 (265)
133 2vgl_A Adaptor protein complex 97.9 0.00099 3.4E-08 70.1 20.9 279 126-447 85-397 (621)
134 1te4_A Conserved protein MTH18 97.9 2.9E-06 1E-10 70.4 1.2 118 205-360 11-130 (131)
135 3b2a_A TON_1937, putative unch 97.9 6.4E-05 2.2E-09 67.3 9.8 183 254-450 33-220 (265)
136 2qk2_A LP04448P; mini spindles 97.8 7E-05 2.4E-09 68.8 10.1 179 210-407 19-207 (242)
137 2ea5_A Cell growth regulator w 97.8 1.4E-05 4.7E-10 58.2 3.2 46 72-122 12-58 (68)
138 2vgl_A Adaptor protein complex 97.7 0.0025 8.5E-08 67.0 21.0 251 166-450 76-360 (621)
139 3dad_A FH1/FH2 domain-containi 97.7 0.0012 4E-08 62.8 15.9 145 301-446 124-284 (339)
140 1ho8_A Vacuolar ATP synthase s 97.6 0.0013 4.3E-08 65.6 14.8 221 226-448 182-476 (480)
141 1te4_A Conserved protein MTH18 97.5 0.00011 3.8E-09 60.7 6.1 118 165-322 13-131 (131)
142 2iw3_A Elongation factor 3A; a 97.5 0.0039 1.3E-07 68.1 19.8 264 164-450 54-326 (986)
143 4ady_A RPN2, 26S proteasome re 97.5 0.0043 1.5E-07 67.1 19.6 198 207-447 473-675 (963)
144 2qk1_A Protein STU2; STU2P, XM 97.5 0.00037 1.3E-08 64.5 9.2 186 170-362 22-219 (249)
145 3dad_A FH1/FH2 domain-containi 97.5 0.0032 1.1E-07 59.7 15.6 180 259-438 123-326 (339)
146 4a0k_B E3 ubiquitin-protein li 97.5 1.8E-05 6.1E-10 63.9 0.0 51 69-121 43-111 (117)
147 2d8s_A Cellular modulator of i 97.4 8E-05 2.7E-09 55.9 3.1 52 72-123 12-71 (80)
148 2db0_A 253AA long hypothetical 97.4 0.015 5.1E-07 50.2 16.9 214 162-406 30-247 (253)
149 1ho8_A Vacuolar ATP synthase s 97.2 0.048 1.6E-06 54.3 21.4 233 205-447 76-349 (480)
150 2iw3_A Elongation factor 3A; a 96.8 0.014 4.9E-07 63.7 14.6 260 165-453 15-285 (986)
151 3tjz_B Coatomer subunit gamma; 96.8 0.0055 1.9E-07 59.4 10.1 242 166-447 70-315 (355)
152 3tjz_B Coatomer subunit gamma; 96.4 0.12 4.1E-06 49.9 16.8 205 208-448 70-279 (355)
153 2db0_A 253AA long hypothetical 96.2 0.24 8.1E-06 42.8 15.0 101 254-363 32-136 (253)
154 4ady_A RPN2, 26S proteasome re 96.1 0.24 8.3E-06 53.7 18.4 168 207-409 508-680 (963)
155 1wa5_C Importin alpha RE-expor 96.1 0.13 4.4E-06 56.8 16.9 219 224-448 417-670 (960)
156 3oc3_A Helicase MOT1, MOT1; re 95.8 0.025 8.5E-07 57.1 8.7 246 165-444 175-432 (800)
157 2ct0_A Non-SMC element 1 homol 95.7 0.0088 3E-07 43.7 3.9 47 76-122 16-64 (74)
158 3vk6_A E3 ubiquitin-protein li 95.5 0.0073 2.5E-07 46.2 2.9 46 77-122 3-49 (101)
159 2fv2_A RCD1 required for cell 95.5 0.26 8.8E-06 44.8 13.4 234 165-403 4-266 (268)
160 1vyx_A ORF K3, K3RING; zinc-bi 95.5 0.015 5E-07 40.7 4.2 47 75-121 6-58 (60)
161 2fv2_A RCD1 required for cell 95.4 0.32 1.1E-05 44.2 13.4 139 308-446 14-172 (268)
162 4ffb_C Protein STU2; tubulin f 95.3 0.28 9.5E-06 45.5 13.8 186 256-450 12-214 (278)
163 3k1l_B Fancl; UBC, ring, RWD, 94.8 0.0044 1.5E-07 58.6 -0.2 48 75-122 308-373 (381)
164 2x19_B Importin-13; nuclear tr 94.3 0.64 2.2E-05 51.0 15.5 175 264-446 459-644 (963)
165 3i2d_A E3 SUMO-protein ligase 93.9 0.044 1.5E-06 52.6 4.3 62 75-136 249-314 (371)
166 3ebb_A Phospholipase A2-activa 93.7 0.38 1.3E-05 45.3 10.4 174 226-400 116-301 (304)
167 4ffb_C Protein STU2; tubulin f 93.1 0.8 2.7E-05 42.3 11.7 183 169-363 14-212 (278)
168 2x1g_F Cadmus; transport prote 92.9 2.1 7E-05 47.0 16.6 175 266-448 476-663 (971)
169 3ebb_A Phospholipase A2-activa 92.7 2.1 7.1E-05 40.3 13.8 132 308-445 161-303 (304)
170 2kkx_A Uncharacterized protein 92.5 0.063 2.2E-06 40.7 2.4 58 68-126 19-83 (102)
171 4fo9_A E3 SUMO-protein ligase 92.2 0.12 4.2E-06 49.4 4.6 62 75-136 215-280 (360)
172 1wa5_C Importin alpha RE-expor 92.0 2.6 9E-05 46.2 15.9 172 228-406 377-583 (960)
173 2jun_A Midline-1; B-BOX, TRIM, 92.0 0.057 1.9E-06 41.9 1.7 33 74-106 2-37 (101)
174 1upk_A MO25 protein; transfera 91.5 9.6 0.00033 36.0 16.9 194 254-448 78-283 (341)
175 2of3_A ZYG-9; multifunctional 91.0 0.65 2.2E-05 42.8 8.0 171 173-362 56-235 (266)
176 3eg5_B Protein diaphanous homo 90.1 2.1 7.2E-05 41.7 11.3 143 294-436 108-282 (383)
177 3oc3_A Helicase MOT1, MOT1; re 89.5 0.51 1.8E-05 47.8 6.2 158 177-362 242-403 (800)
178 1upk_A MO25 protein; transfera 89.5 9.6 0.00033 36.0 14.7 156 290-446 73-236 (341)
179 2f31_A Diaphanous protein homo 89.3 2.6 8.8E-05 37.9 10.5 131 309-439 68-219 (233)
180 2x19_B Importin-13; nuclear tr 89.1 12 0.0004 40.8 17.7 212 223-448 460-714 (963)
181 2x1g_F Cadmus; transport prote 89.0 6.2 0.00021 43.2 15.5 211 224-449 476-723 (971)
182 3u0r_A Apoptosis inhibitor 5; 88.4 2.3 8E-05 42.2 10.0 100 165-283 30-129 (507)
183 2f31_A Diaphanous protein homo 88.0 6.5 0.00022 35.2 12.3 82 205-286 42-128 (233)
184 2of3_A ZYG-9; multifunctional 87.6 6.3 0.00022 36.1 12.0 177 257-450 49-238 (266)
185 2bnx_A Diaphanous protein homo 86.6 5.2 0.00018 38.9 11.5 129 309-437 72-221 (386)
186 3c2g_A SYS-1 protein; beta-cat 86.1 6 0.0002 37.6 10.8 125 278-403 266-401 (619)
187 3eg5_B Protein diaphanous homo 85.1 12 0.0004 36.3 13.2 142 205-347 108-275 (383)
188 1lrv_A LRV, leucine-rich repea 85.1 1.6 5.4E-05 39.7 6.5 169 194-442 63-240 (244)
189 2kre_A Ubiquitin conjugation f 84.9 0.38 1.3E-05 37.2 1.9 33 75-109 63-95 (100)
190 4hat_C Exportin-1; heat repeat 83.0 11 0.00036 41.8 13.1 139 266-408 465-621 (1023)
191 2bnx_A Diaphanous protein homo 82.3 15 0.00053 35.5 12.7 142 205-347 46-213 (386)
192 3ibv_A Exportin-T; karyopherin 81.9 19 0.00065 39.5 14.7 215 225-448 456-730 (980)
193 3u0r_A Apoptosis inhibitor 5; 80.3 22 0.00077 35.3 12.9 118 307-444 40-159 (507)
194 1wgm_A Ubiquitin conjugation f 79.5 0.67 2.3E-05 35.6 1.5 32 75-108 57-88 (98)
195 3ldz_A STAM-1, signal transduc 77.9 8.3 0.00028 31.5 7.8 70 377-447 44-113 (140)
196 1lsh_A Lipovitellin (LV-1N, LV 77.5 76 0.0026 35.1 17.8 125 258-408 444-579 (1056)
197 3c2g_A SYS-1 protein; beta-cat 77.2 12 0.00042 35.6 9.4 111 187-306 266-378 (619)
198 2kr4_A Ubiquitin conjugation f 77.1 0.69 2.4E-05 34.5 0.9 32 75-108 48-79 (85)
199 3m1i_C Exportin-1; heat repeat 76.4 11 0.00038 41.7 10.8 217 164-406 16-264 (1049)
200 1x5b_A Signal transducing adap 74.0 12 0.0004 31.5 7.9 72 376-448 53-125 (163)
201 4hat_C Exportin-1; heat repeat 73.7 13 0.00043 41.2 10.1 99 308-408 466-572 (1023)
202 3mjh_B Early endosome antigen 73.5 0.46 1.6E-05 28.7 -0.8 17 75-91 5-21 (34)
203 3m1i_C Exportin-1; heat repeat 72.9 30 0.001 38.2 13.1 198 226-447 30-262 (1049)
204 2jvx_A NF-kappa-B essential mo 70.5 1.1 3.8E-05 25.7 0.4 19 73-91 1-19 (28)
205 3g2s_A C-terminal fragment of 70.4 17 0.0006 29.9 8.0 71 376-447 49-125 (149)
206 1juq_A ADP-ribosylation factor 70.4 16 0.00056 30.9 8.0 70 377-447 52-127 (171)
207 3nw0_A Non-structural maintena 70.2 3.3 0.00011 37.4 3.7 49 75-123 180-230 (238)
208 1mhq_A ADP-ribosylation factor 69.6 15 0.00052 30.3 7.4 71 376-447 39-115 (148)
209 1t1h_A Gspef-atpub14, armadill 66.6 3 0.0001 30.0 2.2 32 75-108 43-74 (78)
210 3a6p_A Exportin-5; exportin-5, 66.1 1.7E+02 0.0059 32.7 17.6 250 177-441 61-373 (1204)
211 3gjx_A Exportin-1; transport, 64.5 65 0.0022 35.7 13.3 216 163-407 27-277 (1073)
212 3gjx_A Exportin-1; transport, 64.2 81 0.0028 34.9 14.0 204 225-448 41-275 (1073)
213 1lsh_A Lipovitellin (LV-1N, LV 63.8 27 0.00093 38.7 10.2 135 254-408 356-510 (1056)
214 3l9t_A Putative uncharacterize 62.8 32 0.0011 30.8 8.5 129 301-451 77-210 (240)
215 3zyq_A Hepatocyte growth facto 60.6 21 0.00073 31.6 7.2 71 376-447 46-117 (226)
216 2f42_A STIP1 homology and U-bo 60.4 2.6 9E-05 36.2 1.0 30 77-108 143-172 (179)
217 3pst_A Protein DOA1; protein d 57.9 11 0.00039 36.8 5.1 99 225-326 275-391 (425)
218 1dvp_A HRS, hepatocyte growth 57.3 34 0.0012 30.1 7.9 70 377-447 44-114 (220)
219 6rxn_A Rubredoxin; electron tr 56.3 3.4 0.00012 26.8 0.8 13 71-83 26-38 (46)
220 1elk_A Target of MYB1; superhe 55.1 40 0.0014 27.9 7.5 73 376-448 54-130 (157)
221 3pwf_A Rubrerythrin; non heme 53.5 27 0.00092 29.5 6.2 32 70-121 133-164 (170)
222 2yu4_A E3 SUMO-protein ligase 53.2 5.3 0.00018 30.1 1.6 32 75-108 48-82 (94)
223 3l3f_X Protein DOA1, DOA1/UFD3 51.9 11 0.00037 36.2 3.8 99 225-326 212-328 (362)
224 4rxn_A Rubredoxin; electron tr 51.2 4.5 0.00015 27.2 0.8 14 71-84 32-45 (54)
225 3qml_C Protein SLS1, nucleotid 50.8 1.6E+02 0.0053 27.4 13.3 147 296-448 23-189 (315)
226 1e8j_A Rubredoxin; iron-sulfur 50.4 5.4 0.00019 26.5 1.1 14 70-83 31-44 (52)
227 3gae_A Protein DOA1; UFD3, CDC 50.0 12 0.00042 33.9 3.8 99 225-327 103-220 (253)
228 3ibv_A Exportin-T; karyopherin 49.9 77 0.0026 34.7 10.8 214 225-445 103-358 (980)
229 3a6p_A Exportin-5; exportin-5, 49.2 1.8E+02 0.0063 32.5 14.0 121 178-324 28-162 (1204)
230 2c2l_A CHIP, carboxy terminus 49.0 5.6 0.00019 36.3 1.3 31 76-108 244-274 (281)
231 3l9t_A Putative uncharacterize 45.6 1.4E+02 0.0048 26.6 9.8 143 255-416 72-218 (240)
232 1yk4_A Rubredoxin, RD; electro 45.1 6.4 0.00022 26.2 0.8 13 71-83 31-43 (52)
233 2kn9_A Rubredoxin; metalloprot 44.7 7.2 0.00025 28.6 1.0 15 70-84 55-69 (81)
234 2v3b_B Rubredoxin 2, rubredoxi 44.4 6.5 0.00022 26.5 0.7 14 71-84 32-45 (55)
235 3gs3_A Symplekin, LD45768P; he 44.4 29 0.00099 31.5 5.3 63 255-321 54-116 (257)
236 1lrv_A LRV, leucine-rich repea 42.4 12 0.00042 33.6 2.5 61 223-318 157-217 (244)
237 1mhq_A ADP-ribosylation factor 41.4 68 0.0023 26.2 6.7 77 163-240 37-115 (148)
238 1dx8_A Rubredoxin; electron tr 41.4 7.7 0.00026 27.6 0.8 15 71-85 36-50 (70)
239 2ko5_A Ring finger protein Z; 39.6 7.3 0.00025 29.2 0.4 46 75-123 28-74 (99)
240 1juq_A ADP-ribosylation factor 39.5 48 0.0016 27.9 5.6 77 163-240 49-127 (171)
241 3ldz_A STAM-1, signal transduc 39.1 31 0.0011 28.0 4.2 70 255-324 43-114 (140)
242 1x5b_A Signal transducing adap 38.4 77 0.0026 26.3 6.7 70 337-406 53-126 (163)
243 1s24_A Rubredoxin 2; electron 37.4 9.9 0.00034 28.2 0.8 14 71-84 64-77 (87)
244 3qml_C Protein SLS1, nucleotid 37.1 2.6E+02 0.0088 25.9 10.9 133 179-323 44-188 (315)
245 3zyq_A Hepatocyte growth facto 35.2 82 0.0028 27.7 6.8 70 337-406 46-119 (226)
246 1m3v_A FLIN4, fusion of the LI 31.1 15 0.0005 29.0 0.9 53 72-125 29-84 (122)
247 1dvp_A HRS, hepatocyte growth 30.8 77 0.0026 27.7 5.8 70 337-406 43-116 (220)
248 2eo2_A Adult MALE hypothalamus 30.7 20 0.00069 25.2 1.4 23 3-30 39-61 (71)
249 1weo_A Cellulose synthase, cat 30.1 49 0.0017 24.5 3.5 47 75-121 16-69 (93)
250 3rru_A TOM1L1 protein; structu 29.4 86 0.0029 25.8 5.4 72 376-447 54-129 (152)
251 1vdy_A Hypothetical protein (R 29.2 1.1E+02 0.0037 24.8 5.8 72 377-451 51-133 (140)
252 3vhs_A ATPase wrnip1; zinc fin 28.9 13 0.00045 20.4 0.2 12 76-87 7-18 (29)
253 3g2s_A C-terminal fragment of 28.8 63 0.0022 26.5 4.5 70 255-324 49-126 (149)
254 1elk_A Target of MYB1; superhe 28.7 1.1E+02 0.0038 25.2 6.1 74 163-240 52-129 (157)
255 3m62_A Ubiquitin conjugation f 28.5 15 0.00052 39.7 0.7 31 76-108 927-957 (968)
256 2k5c_A Uncharacterized protein 27.2 21 0.00071 25.8 1.0 52 76-127 9-68 (95)
257 3vld_A DNA mismatch repair pro 25.1 5.1E+02 0.017 25.6 13.9 161 228-404 52-224 (500)
258 4dvg_B Diaphanous protein; cyt 24.9 3.2E+02 0.011 23.3 10.8 153 298-454 69-256 (353)
259 2xjy_A Rhombotin-2; oncoprotei 22.8 43 0.0015 26.4 2.4 50 72-122 26-78 (131)
260 1k8v_A Neuropeptide F; moniezi 22.6 1.1E+02 0.0037 18.9 3.4 30 3-32 3-32 (40)
261 1lko_A Rubrerythrin all-iron(I 22.3 75 0.0026 27.2 4.0 12 75-86 155-166 (191)
262 1yuz_A Nigerythrin; rubrythrin 21.1 1.8E+02 0.0062 25.0 6.2 29 73-121 169-197 (202)
263 3gae_A Protein DOA1; UFD3, CDC 20.8 93 0.0032 27.9 4.4 61 265-325 101-170 (253)
264 2cs3_A Protein C14ORF4, MY039 20.6 64 0.0022 23.3 2.5 43 74-116 14-64 (93)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=2.3e-32 Score=269.34 Aligned_cols=271 Identities=18% Similarity=0.184 Sum_probs=235.0
Q ss_pred hhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhcccccc-----ccCCCChhhHHHHHHHHHccccCcc-hhHHHhc
Q 012813 178 PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESK-----CENGINPNLQEDVITTLLNLSIHDN-NKKLVAE 251 (456)
Q Consensus 178 ~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~-----~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~ 251 (456)
..+..|++.|.+++. ++++|..|.+ .|+++.|+.+|.... ..+..+++++.+|+++|.||+.+++ ++..+..
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHH-TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHH-cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456689999999999 5899999999 999999999995210 0001246799999999999998876 6777766
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC--CccchhhcccCccHHHHhcc-ccCChhHHHHHHHHHHHhcc-Cch
Q 012813 252 TPMVIPLLMDALRSGTIETRSNAAAALFTLSAL--DSNKEVIGKSGALKPLIDLL-DEGHQSAMKDVASAIFNLCI-THE 327 (456)
Q Consensus 252 ~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~--~~~~~~i~~~G~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~-~~~ 327 (456)
.+|++|.|+.+|++++.++++.|+++|+||+.. +++|..|++.|+|+.|+++| ++++..+++.|+.+|+||+. +++
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 667899999999999999999999999999975 46899999999999999975 56788999999999999999 668
Q ss_pred hhHHHH-hcCcHHHHHHHHcCC------chHHHHHHHHHHhhC----CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHH
Q 012813 328 NKARAV-RDGGVSVILKKIMDG------VHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 396 (456)
Q Consensus 328 ~~~~~v-~~g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 396 (456)
++..++ ..|++|.|+++|.++ .+++.|+++|++|+. +++++..+.++|+++.|+.+|++++ ..++++|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A 283 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNA 283 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHHHHH
Confidence 899998 789999999999864 278999999999995 7899999999999999999999764 8999999
Q ss_pred HHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhc
Q 012813 397 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 452 (456)
Q Consensus 397 ~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~~ 452 (456)
+++|+||+..+++..+.++ +.|+++.|+.|++++++++++.|+++|+||....+.
T Consensus 284 ~~aL~nLa~~~~~~~~~i~-~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALW-DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHH-HTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999987776555555 579999999999999999999999999999876443
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=3.6e-31 Score=268.43 Aligned_cols=268 Identities=18% Similarity=0.194 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhcccccc-----ccCCCChhhHHHHHHHHHccccCcc-hhHHHhcCC
Q 012813 180 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESK-----CENGINPNLQEDVITTLLNLSIHDN-NKKLVAETP 253 (456)
Q Consensus 180 ~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~-----~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~ 253 (456)
+.+|++.|.+++. ++++|..|.+ .|+++.|+.+|.... ..+..++.++.+|+++|.||+.+++ ++..+...+
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~ 242 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 242 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHH-CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcC
Confidence 3489999999988 5999999999 999999999995210 0001246789999999999998886 566665566
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccC--CccchhhcccCccHHHHhc-cccCChhHHHHHHHHHHHhcc-Cchhh
Q 012813 254 MVIPLLMDALRSGTIETRSNAAAALFTLSAL--DSNKEVIGKSGALKPLIDL-LDEGHQSAMKDVASAIFNLCI-THENK 329 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~--~~~~~~i~~~G~i~~Lv~l-L~~~~~~~~~~a~~aL~~L~~-~~~~~ 329 (456)
|++|.|+.+|++++.+++..|+++|.||+.. ++++..|++.|+|+.|+++ +.+++..+++.|+.+|+||+. +++++
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 7899999999999999999999999999984 4688999999999999997 456788999999999999999 77899
Q ss_pred HHHH-hcCcHHHHHHHHcCC--c----hHHHHHHHHHHhhC----CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHH
Q 012813 330 ARAV-RDGGVSVILKKIMDG--V----HVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIA 398 (456)
Q Consensus 330 ~~~v-~~g~v~~Lv~lL~~~--~----~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~ 398 (456)
..++ ..|++|.|+++|..+ . +++.|+++|++|+. ++++++.+.++|+++.|+.+|++++ ..++++|++
T Consensus 323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~ 401 (458)
T 3nmz_A 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACG 401 (458)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHH
Confidence 9998 789999999999864 2 78999999999994 7899999999999999999999764 889999999
Q ss_pred HHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 012813 399 ILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 451 (456)
Q Consensus 399 ~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~ 451 (456)
+|+||+..+++..+.++ +.|++++|+.|++++++++++.|+++|+||..+.+
T Consensus 402 aL~nLa~~~~~~~~~i~-~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 402 TLWNLSARNPKDQEALW-DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHSSCHHHHHHHH-HHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999987776655555 56999999999999999999999999999987643
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=1.6e-30 Score=266.34 Aligned_cols=278 Identities=19% Similarity=0.193 Sum_probs=239.6
Q ss_pred hHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC-
Q 012813 165 HFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH- 242 (456)
Q Consensus 165 ~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~- 242 (456)
.++.++..|++ +.+.|..|++.|++++..++.++..+.+ .|+||.|+.+|+ +.++++++.|+++|.||+.+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~------s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLR------SPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTT------SSCHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCC
Confidence 47889999964 5788999999999999877788888888 899999999999 55789999999999999987
Q ss_pred cchhHHHhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccc--------cC------
Q 012813 243 DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD--------EG------ 307 (456)
Q Consensus 243 ~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~--------~~------ 307 (456)
++++..+++. |++|.|+++|+ +++.++++.++++|+||+..++++..+++ |+++.|+++|. ++
T Consensus 76 ~~~k~~i~~~-G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 76 TTNKLETRRQ-NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred HHHHHHHHHc-CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence 6789999887 58999999999 88999999999999999999999999999 99999999993 22
Q ss_pred --ChhHHHHHHHHHHHhccCchhhHHHHhc-CcHHHHHHHHcC--------CchHHHHHHHHHHhhCCH-----------
Q 012813 308 --HQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMD--------GVHVDELLAILAMLSTNH----------- 365 (456)
Q Consensus 308 --~~~~~~~a~~aL~~L~~~~~~~~~~v~~-g~v~~Lv~lL~~--------~~~~~~a~~~L~~L~~~~----------- 365 (456)
+..+.+.|+++|+|||..++++..+++. |+++.|+.+|.+ ...++.|+.+|++|+...
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~ 233 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence 4566779999999999998899999998 999999999974 367899999999998421
Q ss_pred ----------------------------------------HHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhc
Q 012813 366 ----------------------------------------RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 405 (456)
Q Consensus 366 ----------------------------------------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 405 (456)
++.+.+.+.|+++.|+.+|+++.++..++.|+++|+|||.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 1223455677899999999987679999999999999998
Q ss_pred cChhh---H-HHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 012813 406 SDRTK---W-KAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 451 (456)
Q Consensus 406 ~~~~~---~-~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~ 451 (456)
+.... . +.++.+.|+++.|++|++++++++++.|+++|+|++...+
T Consensus 314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 65432 2 4456567999999999999999999999999999987653
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=9.4e-30 Score=263.74 Aligned_cols=280 Identities=19% Similarity=0.211 Sum_probs=237.6
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
...++.||+.|.+ +.+.|.+|++.|.+++..++.+|..+.+ .|+||.|+.+|+ +.++++++.|+++|.||+.
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~-~G~Ip~LV~LL~------s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK-LKGIPVLVGLLD------HPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHGGG------CSSHHHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCcHHHHHHHC------CCCHHHHHHHHHHHHHHHc
Confidence 4578999999965 4678999999999999988999999999 999999999999 5689999999999999998
Q ss_pred C--cchhHHHhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccc-------------
Q 012813 242 H--DNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD------------- 305 (456)
Q Consensus 242 ~--~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~------------- 305 (456)
+ ++++..|++. |++|.|+.+|++ ++.+++++++++|++|+..++++..|++ |+++.|+++|.
T Consensus 120 ~~~~~nk~~I~~~-GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 120 GRDQDNKIAIKNC-DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp SSCHHHHHHHHHT-THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred cCCHHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence 5 6799999987 589999999998 4789999999999999999999999995 67999999872
Q ss_pred -----cCChhHHHHHHHHHHHhccCch-hhHHHHhc-CcHHHHHHHHcC--------CchHHHHHHHHHHhhCCHH----
Q 012813 306 -----EGHQSAMKDVASAIFNLCITHE-NKARAVRD-GGVSVILKKIMD--------GVHVDELLAILAMLSTNHR---- 366 (456)
Q Consensus 306 -----~~~~~~~~~a~~aL~~L~~~~~-~~~~~v~~-g~v~~Lv~lL~~--------~~~~~~a~~~L~~L~~~~~---- 366 (456)
..+..++++|+++|+||+...+ +|..+++. |+++.|+.+|.+ ...++.|+++|+||+...+
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~ 277 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP 277 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccccc
Confidence 1256899999999999999875 58888875 668899999973 2578999999999997622
Q ss_pred ----------------------HHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccCh---hhHHHHHHhhccH
Q 012813 367 ----------------------AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR---TKWKAMREEESTH 421 (456)
Q Consensus 367 ----------------------~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~---~~~~~~~~~~g~~ 421 (456)
+.+.+.+.++++.|+.+|+.+.++.++++|+++|+|||.... ...+.++.+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~gl 357 (584)
T 3l6x_A 278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKAL 357 (584)
T ss_dssp TCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHH
T ss_pred chhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcH
Confidence 112233445678889999876669999999999999998652 2234566667999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 012813 422 GTISKLAQDGTARAKRKATGILERLKRTVN 451 (456)
Q Consensus 422 ~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~ 451 (456)
+.|++|+.++++.+++.|.++|+||+.+..
T Consensus 358 p~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 358 SAIADLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 999999999999999999999999998654
No 5
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=6.3e-28 Score=258.00 Aligned_cols=280 Identities=13% Similarity=0.123 Sum_probs=242.8
Q ss_pred hhhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCc-----------------------------hhh---hhhhccCCc
Q 012813 161 ADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMP-----------------------------SFR---ALFGESHDA 207 (456)
Q Consensus 161 ~~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~-----------------------------~~r---~~i~~~~g~ 207 (456)
.+.+.++.|++.|++ +...+..|++.|.|++...+ .++ +.+.+ .|+
T Consensus 418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve-aGa 496 (810)
T 3now_A 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN-EGI 496 (810)
T ss_dssp HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH-TTH
T ss_pred HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH-CcC
Confidence 356899999999975 46789999999999998542 122 56777 899
Q ss_pred hhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCcc
Q 012813 208 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN 287 (456)
Q Consensus 208 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~ 287 (456)
+|.|+.+|+ +.++.++++|+++|.|++.+++++..+++. |++|.|+.+|++++...++.|+++|.+|+...+.
T Consensus 497 Vp~LV~LL~------s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~-Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 497 TTALCALAK------TESHNSQELIARVLNAVCGLKELRGKVVQE-GGVKALLRMALEGTEKGKRHATQALARIGITINP 569 (810)
T ss_dssp HHHHHHHHT------CCCHHHHHHHHHHHHHHHTSHHHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh
Confidence 999999999 557999999999999999988899999987 5899999999999999999999999999986554
Q ss_pred chhhcc---cCccHHHHhccccC-ChhHHHHHHHHHHHhccCc-hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHH
Q 012813 288 KEVIGK---SGALKPLIDLLDEG-HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 360 (456)
Q Consensus 288 ~~~i~~---~G~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~ 360 (456)
...+.. .|++++|+.+|.++ +...+..|+++|.||+..+ +++..+++.|+++.|+.+|.++ .++..|+++|+|
T Consensus 570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N 649 (810)
T 3now_A 570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649 (810)
T ss_dssp HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 443322 57999999999865 3344578999999999875 6888999999999999999865 789999999999
Q ss_pred hhCCHHHHHHHHh-hCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHH
Q 012813 361 LSTNHRAVEEIGD-LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA 439 (456)
Q Consensus 361 L~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A 439 (456)
|+.+++.+..+.+ .|+++.|+.++.+. +..+|+.|+++|++|+.+++...+.++...|+++.|+.|+.++++.+|+.|
T Consensus 650 La~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A 728 (810)
T 3now_A 650 LVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG 728 (810)
T ss_dssp HTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHH
T ss_pred HhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHH
Confidence 9999999988885 68999999999975 489999999999999998777777788646999999999999999999999
Q ss_pred HHHHHHHhcc
Q 012813 440 TGILERLKRT 449 (456)
Q Consensus 440 ~~~L~~l~~~ 449 (456)
.++|.|+..+
T Consensus 729 ~~aL~NL~~~ 738 (810)
T 3now_A 729 IVIILNMINA 738 (810)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 9999999764
No 6
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=5e-29 Score=245.52 Aligned_cols=250 Identities=21% Similarity=0.217 Sum_probs=217.5
Q ss_pred cccccchhhhhHHHHHHHhcC------------CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccC
Q 012813 155 EEGITEADRDHFLSLLKKMSA------------TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCEN 222 (456)
Q Consensus 155 ~~~~~~~~~~~i~~Lv~~L~~------------~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~ 222 (456)
++|..+.+.|+++.|+..|.+ +...|++|++.|.+++..++.++..+....|+||.|+.+|+
T Consensus 64 e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~------ 137 (354)
T 3nmw_A 64 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK------ 137 (354)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG------
T ss_pred HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC------
Confidence 445566778999999999842 24679999999999999777788888652567999999999
Q ss_pred CCChhhHHHHHHHHHccccC--cchhHHHhcCCCCHHHHHHHH-hcCCHHHHHHHHHHHHHhcc-CCccchhhc-ccCcc
Q 012813 223 GINPNLQEDVITTLLNLSIH--DNNKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSA-LDSNKEVIG-KSGAL 297 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~aa~aL~~Ls~-~~~~~~~i~-~~G~i 297 (456)
+.++++++.|+++|.||+.+ ++++..+++. |++|.|+++| ++++.++++.++++|+||+. .++++..|+ ..|++
T Consensus 138 s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~-G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai 216 (354)
T 3nmw_A 138 SESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGAL 216 (354)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcH
Confidence 56889999999999999985 4578888877 5899999975 56789999999999999998 668888888 78999
Q ss_pred HHHHhccccCCh----hHHHHHHHHHHHhcc----CchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHH
Q 012813 298 KPLIDLLDEGHQ----SAMKDVASAIFNLCI----THENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHR 366 (456)
Q Consensus 298 ~~Lv~lL~~~~~----~~~~~a~~aL~~L~~----~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~ 366 (456)
+.|+++|.++++ ++++.|+++|+||+. .++++..+++.|++|.|+++|.++ .+++.|+++|+||+. +++
T Consensus 217 ~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 296 (354)
T 3nmw_A 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 296 (354)
T ss_dssp HHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH
Confidence 999999987654 489999999999995 778999999999999999999976 679999999999995 789
Q ss_pred HHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHH
Q 012813 367 AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWK 412 (456)
Q Consensus 367 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 412 (456)
.+..+.+.|+++.|+.++++++ +.+++.|+++|.+|+.+.+.+++
T Consensus 297 ~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 297 DQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCHHHHh
Confidence 9999999999999999999764 89999999999999999886544
No 7
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=246.77 Aligned_cols=287 Identities=15% Similarity=0.153 Sum_probs=234.1
Q ss_pred cchhhhhHHHHHHHhcCC-------------chhHHHHHHHHHHHhhcCchhhhhhhccCCch----------hhhhhcc
Q 012813 159 TEADRDHFLSLLKKMSAT-------------LPDQTEAAKELRLLTKRMPSFRALFGESHDAI----------PQLLSPL 215 (456)
Q Consensus 159 ~~~~~~~i~~Lv~~L~~~-------------~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i----------~~Lv~lL 215 (456)
...+.|.++.|++.|..+ .+.+.+|+++|.+++..+++......+ .|++ +.++.++
T Consensus 65 ~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~ 143 (458)
T 3nmz_A 65 SMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRRE-IRVLHLLEQIRAYCETCWEWQ 143 (458)
T ss_dssp HHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHH-HHHHHHHHHhhhhhHHHHHHH
Confidence 346689999999999642 477899999999999988777666666 5666 6666777
Q ss_pred ccccccCC-CChhhH-------HHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhc-----------CCHHHHHHHHH
Q 012813 216 SESKCENG-INPNLQ-------EDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-----------GTIETRSNAAA 276 (456)
Q Consensus 216 ~~~~~~~~-~~~~~~-------~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~-----------~~~~~~~~aa~ 276 (456)
.+.....+ ....+. .+|+++|.|++.++++|..+++. |+++.|+.+|.. .++.++.+|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~ 222 (458)
T 3nmz_A 144 EAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM 222 (458)
T ss_dssp TTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHT-THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHH
Confidence 65421000 000133 39999999999998999999987 489999999952 24678999999
Q ss_pred HHHHhccCCc-cchhhc-ccCccHHHHhccccCChhHHHHHHHHHHHhccC--chhhHHHHhcCcHHHHHHHHcC-C--c
Q 012813 277 ALFTLSALDS-NKEVIG-KSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT--HENKARAVRDGGVSVILKKIMD-G--V 349 (456)
Q Consensus 277 aL~~Ls~~~~-~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~--~~~~~~~v~~g~v~~Lv~lL~~-~--~ 349 (456)
+|.||+..++ ++..+. ..|+|+.|+.+|.++++++++.|+++|+||+.. +++|..+++.|+||.|+++|.. + .
T Consensus 223 aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~ 302 (458)
T 3nmz_A 223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302 (458)
T ss_dssp HHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHH
T ss_pred HHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHH
Confidence 9999998765 666665 457799999999999999999999999999984 5688999999999999998643 3 6
Q ss_pred hHHHHHHHHHHhhC-CHHHHHHHH-hhCcHHHHHHHhhhcCCh---hHHHHHHHHHHHHhc---cChhhHHHHHHhhccH
Q 012813 350 HVDELLAILAMLST-NHRAVEEIG-DLGGVSCMLRIIRESTCD---RNKENCIAILHTICL---SDRTKWKAMREEESTH 421 (456)
Q Consensus 350 ~~~~a~~~L~~L~~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~---~~~~~A~~~L~~l~~---~~~~~~~~~~~~~g~~ 421 (456)
.++.|+.+|+||+. +++++..+. ..|+++.|+.+|..+++. .+++.|+++|+||+. .+++.. ..+.+.|++
T Consensus 303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~-~~i~~~G~i 381 (458)
T 3nmz_A 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR-QILRENNCL 381 (458)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHTTHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHH-HHHHHcccH
Confidence 78899999999999 778888887 789999999999975422 489999999999997 565554 444467999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 422 GTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 422 ~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
+.|+.++.+++..+++.|+++|.||+.
T Consensus 382 ~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 382 QTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 999999999999999999999999984
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=3.9e-28 Score=248.52 Aligned_cols=287 Identities=18% Similarity=0.186 Sum_probs=239.8
Q ss_pred cchhhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHH
Q 012813 159 TEADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 237 (456)
Q Consensus 159 ~~~~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 237 (456)
...+.|+++.|++.|++ +...|..|+++|++++..+++++..|.+ .|+||.|+.+|+. +.+++++++|+++|.
T Consensus 39 ~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~-~G~i~~Lv~lL~~-----~~~~~~~~~a~~aL~ 112 (457)
T 1xm9_A 39 QVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR-QNGIREAVSLLRR-----TGNAEIQKQLTGLLW 112 (457)
T ss_dssp HHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHHHTT-----CCCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhh-----CCCHHHHHHHHHHHH
Confidence 45568999999999975 4678999999999999977999999999 8999999999983 236899999999999
Q ss_pred ccccCcchhHHHhcCCCCHHHHHHHHh--------cC--------CHHHHHHHHHHHHHhccCCccchhhccc-CccHHH
Q 012813 238 NLSIHDNNKKLVAETPMVIPLLMDALR--------SG--------TIETRSNAAAALFTLSALDSNKEVIGKS-GALKPL 300 (456)
Q Consensus 238 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~--------~~--------~~~~~~~aa~aL~~Ls~~~~~~~~i~~~-G~i~~L 300 (456)
||+.+++++..++. |++|.|+++|. ++ +..+.++|+++|+||+..++++..+.+. |+++.|
T Consensus 113 nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~L 190 (457)
T 1xm9_A 113 NLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSL 190 (457)
T ss_dssp HHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHH
T ss_pred HHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHH
Confidence 99999889998887 58999999993 22 3456679999999999988889999987 999999
Q ss_pred HhccccC-------------------------------------------------------------------------
Q 012813 301 IDLLDEG------------------------------------------------------------------------- 307 (456)
Q Consensus 301 v~lL~~~------------------------------------------------------------------------- 307 (456)
+.+|.++
T Consensus 191 v~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (457)
T 1xm9_A 191 MAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEE 270 (457)
T ss_dssp HHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCC
T ss_pred HHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccc
Confidence 9888630
Q ss_pred --------------------------ChhHHHHHHHHHHHhccCchh------hHHHHhcCcHHHHHHHHcCC--chHHH
Q 012813 308 --------------------------HQSAMKDVASAIFNLCITHEN------KARAVRDGGVSVILKKIMDG--VHVDE 353 (456)
Q Consensus 308 --------------------------~~~~~~~a~~aL~~L~~~~~~------~~~~v~~g~v~~Lv~lL~~~--~~~~~ 353 (456)
++.+++.|+++|+||+..... +..+.+.|++|.|+++|.++ .++..
T Consensus 271 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~ 350 (457)
T 1xm9_A 271 TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRS 350 (457)
T ss_dssp SSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHH
T ss_pred cCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHH
Confidence 234566688999999875432 22333689999999999976 68899
Q ss_pred HHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCC-----hhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh
Q 012813 354 LLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC-----DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA 428 (456)
Q Consensus 354 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll 428 (456)
|+++|.+|+.+++.+..+. .|+++.|+++|..+++ +.+...++++|.++...++... ..+.+.|+++.|..|+
T Consensus 351 A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~-~~i~~~g~l~~L~~L~ 428 (457)
T 1xm9_A 351 GASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLA-KQYFSSSMLNNIINLC 428 (457)
T ss_dssp HHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHH-HHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHcCCHHHHHHHH
Confidence 9999999999988876664 5789999999997542 3577899999999998887654 4455679999999999
Q ss_pred hcC-CHHHHHHHHHHHHHHhcchhccCC
Q 012813 429 QDG-TARAKRKATGILERLKRTVNLTHT 455 (456)
Q Consensus 429 ~~~-~~~~k~~A~~~L~~l~~~~~~~~~ 455 (456)
.++ +++++++|.++|.++..+.+++.+
T Consensus 429 ~~~~~~~i~~~A~~~L~~~~~~~~l~~~ 456 (457)
T 1xm9_A 429 RSSASPKAAEAARLLLSDMWSSKELQGV 456 (457)
T ss_dssp HCTTCHHHHHHHHHHHHTTSSSTTCSSC
T ss_pred cCCCcHHHHHHHHHHHHHHHcchhhhcc
Confidence 999 999999999999999998887754
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=6.8e-27 Score=242.70 Aligned_cols=280 Identities=14% Similarity=0.142 Sum_probs=241.8
Q ss_pred chhhhhHHHHHHHhcC--CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHH
Q 012813 160 EADRDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 237 (456)
Q Consensus 160 ~~~~~~i~~Lv~~L~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 237 (456)
..+.|.++.||+.|+. ++..|.+|+++|.+++..+++++..+++ .|+||.|+.+|+ +.+.++++.|+++|.
T Consensus 96 ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~-~GaIp~Lv~lL~------s~~~~v~e~A~~aL~ 168 (510)
T 3ul1_B 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLA------SPHAHISEQAVWALG 168 (510)
T ss_dssp HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 3457899999999963 3678999999999999989999999999 999999999999 568999999999999
Q ss_pred ccccCcc-hhHHHhcCCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhccCCccchhhc-ccCccHHHHhccccCChh
Q 012813 238 NLSIHDN-NKKLVAETPMVIPLLMDALRSGT-----IETRSNAAAALFTLSALDSNKEVIG-KSGALKPLIDLLDEGHQS 310 (456)
Q Consensus 238 ~Ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~aa~aL~~Ls~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~ 310 (456)
|++.+.+ ++..+... |+++.|+.+|..++ ...+++++++|.+++........+. ..|+++.|+.+|.+++++
T Consensus 169 nLa~d~~~~r~~v~~~-G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~ 247 (510)
T 3ul1_B 169 NIAGDGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 247 (510)
T ss_dssp HHHTTCHHHHHHHHHT-TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHhCCHHHHHHHHHc-CChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHH
Confidence 9998765 56677766 58999999998654 4678899999999998776555443 468999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhHH-HHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhh
Q 012813 311 AMKDVASAIFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRE 386 (456)
Q Consensus 311 ~~~~a~~aL~~L~~~~~~~~~-~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~ 386 (456)
++..|+++|.+|+....++.. +++.|+++.|+++|.++ .++..++.+|.+++.. ++.+..+.+.|+++.|+.++.+
T Consensus 248 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~ 327 (510)
T 3ul1_B 248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 327 (510)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC
T ss_pred HHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC
Confidence 999999999999988766554 56789999999999876 6788999999999885 6678888999999999999987
Q ss_pred cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 387 STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 387 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
.+ +.+++.|+++|.||+.+++...+.++ +.|+++.|+.++.+++..+|+.|+++|.|+...
T Consensus 328 ~~-~~v~~~A~~aL~nl~a~~~~~~~~v~-~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 328 PK-TNIQKEATWTMSNITAGRQDQIQQVV-NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp SS-HHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHcCcHHHHHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 64 89999999999999998887655555 569999999999999999999999999999753
No 10
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=2.7e-27 Score=245.41 Aligned_cols=288 Identities=17% Similarity=0.191 Sum_probs=232.4
Q ss_pred ccccchhhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhc-CchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHH
Q 012813 156 EGITEADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVI 233 (456)
Q Consensus 156 ~~~~~~~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~-~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~ 233 (456)
.+..+.+.|+|+.||+.|++ +...|+.|+++|++|+.. ++++|..|.+ .|+|+.|+.+|+++ .+.+++++|+
T Consensus 82 ~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~-~GaIp~LV~LL~s~-----~~~~~~e~aa 155 (584)
T 3l6x_A 82 VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN-CDGVPALVRLLRKA-----RDMDLTEVIT 155 (584)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH-TTHHHHHHHHHHHC-----CSHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH-cCCHHHHHHHHcCC-----CCHHHHHHHH
Confidence 44456678999999999975 478899999999999985 6899999999 99999999999852 3678999999
Q ss_pred HHHHccccCcchhHHHhcCCCCHHHHHHHHh------------------cCCHHHHHHHHHHHHHhccCCc-cchhhccc
Q 012813 234 TTLLNLSIHDNNKKLVAETPMVIPLLMDALR------------------SGTIETRSNAAAALFTLSALDS-NKEVIGKS 294 (456)
Q Consensus 234 ~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~------------------~~~~~~~~~aa~aL~~Ls~~~~-~~~~i~~~ 294 (456)
.+|.+|+.+++++..|+. + ++|.|+++|. ..+..++++|+++|+||+..++ ++..|++.
T Consensus 156 ~aL~nLS~~~~~k~~I~~-~-alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~ 233 (584)
T 3l6x_A 156 GTLWNLSSHDSIKMEIVD-H-ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLREC 233 (584)
T ss_dssp HHHHHHTTSGGGHHHHHH-H-THHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS
T ss_pred HHHHHHhCCchhhHHHHh-c-cHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 999999999999999995 3 5999999872 1247899999999999998764 46666653
Q ss_pred -CccHHHHhcccc-------------------------------------------------------------------
Q 012813 295 -GALKPLIDLLDE------------------------------------------------------------------- 306 (456)
Q Consensus 295 -G~i~~Lv~lL~~------------------------------------------------------------------- 306 (456)
|+++.|+.+|++
T Consensus 234 ~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~L 313 (584)
T 3l6x_A 234 DGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIY 313 (584)
T ss_dssp TTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHH
T ss_pred CCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHH
Confidence 555566665532
Q ss_pred -------CChhHHHHHHHHHHHhccCc-----hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHH
Q 012813 307 -------GHQSAMKDVASAIFNLCITH-----ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIG 372 (456)
Q Consensus 307 -------~~~~~~~~a~~aL~~L~~~~-----~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~ 372 (456)
.++.+++.|+++|.|||... .++..+.+.|++|.|+++|..+ .+++.|+++|.||+.++.++..|
T Consensus 314 l~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I- 392 (584)
T 3l6x_A 314 ISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI- 392 (584)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-
Confidence 23455666777777776543 2233334568899999999875 78899999999999998888766
Q ss_pred hhCcHHHHHHHhhhcC-------ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC--CHHHHHHHHHHH
Q 012813 373 DLGGVSCMLRIIREST-------CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGIL 443 (456)
Q Consensus 373 ~~g~i~~Lv~ll~~~~-------~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~--~~~~k~~A~~~L 443 (456)
..|+++.||.+|.+++ ++.+...|+++|.||+..++...+.++ +.|+++.|+.|+.++ .+.+++.|+++|
T Consensus 393 ~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~-~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL 471 (584)
T 3l6x_A 393 GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLR-ETQGIEKLVLINKSGNRSEKEVRAAALVL 471 (584)
T ss_dssp HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHTCSSSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHHhCCCCChHHHHHHHHHH
Confidence 7789999999998752 357788999999999998887766666 569999999999987 889999999999
Q ss_pred HHHhcchhcc
Q 012813 444 ERLKRTVNLT 453 (456)
Q Consensus 444 ~~l~~~~~~~ 453 (456)
.+|..+.+++
T Consensus 472 ~nl~~~~elr 481 (584)
T 3l6x_A 472 QTIWGYKELR 481 (584)
T ss_dssp HHHHTSHHHH
T ss_pred HHHHcCHHHH
Confidence 9998876654
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=3.1e-26 Score=238.90 Aligned_cols=280 Identities=14% Similarity=0.135 Sum_probs=242.8
Q ss_pred chhhhhHHHHHHHhcC--CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHH
Q 012813 160 EADRDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 237 (456)
Q Consensus 160 ~~~~~~i~~Lv~~L~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 237 (456)
..+.|.++.|++.|+. ++..|.+|+++|.+++..++..+..+.+ .|+||.|+.+|. +.+.++++.|+++|.
T Consensus 115 ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~-~Gaip~Lv~LL~------s~~~~v~e~A~~aL~ 187 (529)
T 3tpo_A 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLA------SPHAHISEQAVWALG 187 (529)
T ss_dssp HHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 3457899999999963 3678999999999999988888889999 899999999999 668999999999999
Q ss_pred ccccCc-chhHHHhcCCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhccCCccchhhc-ccCccHHHHhccccCChh
Q 012813 238 NLSIHD-NNKKLVAETPMVIPLLMDALRSGT-----IETRSNAAAALFTLSALDSNKEVIG-KSGALKPLIDLLDEGHQS 310 (456)
Q Consensus 238 ~Ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~aa~aL~~Ls~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~ 310 (456)
||+.+. +++..+... |+++.|+.+|..++ ....++++++|.+++........+. ..|+++.|+.+|.+++++
T Consensus 188 nLa~~~~~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~ 266 (529)
T 3tpo_A 188 NIAGAGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 266 (529)
T ss_dssp HHHTTCHHHHHHHHHT-TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHhccCHHHHHHHHHc-CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHH
Confidence 999876 467777776 58999999997653 4678899999999998776555443 468999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhH-HHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhh
Q 012813 311 AMKDVASAIFNLCITHENKA-RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRE 386 (456)
Q Consensus 311 ~~~~a~~aL~~L~~~~~~~~-~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~ 386 (456)
++..|+++|.+|+....++. .+++.|+++.|+++|.++ .++..++.+|.+++.+ ++.+..+.+.|+++.|+.++.+
T Consensus 267 v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~ 346 (529)
T 3tpo_A 267 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 346 (529)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC
Confidence 99999999999998876554 456889999999999876 6788999999999885 6778888999999999999997
Q ss_pred cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 387 STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 387 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
++ +.+++.|+++|.||+.+++.....++ +.|+++.|+.++.+++..++..|+++|.|+..+
T Consensus 347 ~~-~~i~~~a~~aL~nl~~~~~~~~~~v~-~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 347 PK-TNIQKEATWTMSNITAGRQDQIQQVV-NHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp SS-HHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHhcccHHHHHHHH-hcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 64 89999999999999998887655555 569999999999999999999999999999754
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=1.2e-25 Score=234.29 Aligned_cols=288 Identities=14% Similarity=0.164 Sum_probs=244.3
Q ss_pred cchhhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHH
Q 012813 159 TEADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 237 (456)
Q Consensus 159 ~~~~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~ 237 (456)
...+.|+++.|+..|.+ +...++.|+++|.+++.+++.+|..+.+ .|+++.|+.+|..... ..........++++|.
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~-~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIK-HGAIDPLLALLAVPDL-STLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHTTCSSCG-GGSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHH-cCCcHHHHHHHhccch-hHhHHHHHHHHHHHHH
Confidence 34567899999999965 4788999999999999988999999999 8999999999985421 0123456889999999
Q ss_pred ccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCc-cchhhcccCccHHHHhccccCChhHHHHHH
Q 012813 238 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVA 316 (456)
Q Consensus 238 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~ 316 (456)
+++.+......+....+++|.|+.+|.+++++++..++++|.+|+...+ ....+...|+++.|+.+|.+.+..++..|+
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 9998876544443333589999999999999999999999999998764 455677899999999999999999999999
Q ss_pred HHHHHhccCc-hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhH
Q 012813 317 SAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRN 392 (456)
Q Consensus 317 ~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 392 (456)
++|+||+... ..+..+++.|+++.|+.+|.++ .++..|+++|.+|+.+ ++.+..+.+.|+++.|+.++.+++ ..+
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v 393 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKT 393 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHH
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHH
Confidence 9999998755 5677778999999999999876 6789999999999985 677888899999999999999765 899
Q ss_pred HHHHHHHHHHHhccCh-hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 393 KENCIAILHTICLSDR-TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 393 ~~~A~~~L~~l~~~~~-~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
+..|+++|.|++.+.. +....++ +.|++++|..|+.+.++.++..+.++|.|+.++.
T Consensus 394 ~~~A~~aL~nl~~~~~~~~~~~l~-~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 394 QKAAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHH-HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-HCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999998643 4434444 5699999999999999999999999999987654
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=2.9e-26 Score=245.23 Aligned_cols=279 Identities=17% Similarity=0.130 Sum_probs=239.6
Q ss_pred hhhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcc
Q 012813 161 ADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 239 (456)
Q Consensus 161 ~~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L 239 (456)
.+.|+++.|+..|++ ++..|++|++.|.+++. ++++|..+.+ .|+++.|+.+|.+ .+...++.|+++|.+|
T Consensus 492 veaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~-~Gaip~Lv~LL~s------~~~~~k~~Aa~AL~nL 563 (810)
T 3now_A 492 ANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQ-EGGVKALLRMALE------GTEKGKRHATQALARI 563 (810)
T ss_dssp HHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHH-TTHHHHHHHHHHS------SCHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHH-CCCHHHHHHHHcc------CCHHHHHHHHHHHHHH
Confidence 456899999999975 47889999999999997 6789999999 9999999999984 4678999999999999
Q ss_pred ccCcchhHHHhc--CCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccC-CccchhhcccCccHHHHhccccCChhHHHHH
Q 012813 240 SIHDNNKKLVAE--TPMVIPLLMDALRSG-TIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDV 315 (456)
Q Consensus 240 s~~~~~~~~i~~--~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a 315 (456)
+.+.+....+.. ..+++|.|+.+|.++ +...+..|+++|.||+.. ++++..+++.|+++.|+.+|.++++.+++.|
T Consensus 564 ~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A 643 (810)
T 3now_A 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA 643 (810)
T ss_dssp HHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHH
T ss_pred hcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHH
Confidence 876543332211 013799999999876 455567899999999987 4788899999999999999999999999999
Q ss_pred HHHHHHhccCchhhHHHHh-cCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHh-hCcHHHHHHHhhhcCCh
Q 012813 316 ASAIFNLCITHENKARAVR-DGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGD-LGGVSCMLRIIRESTCD 390 (456)
Q Consensus 316 ~~aL~~L~~~~~~~~~~v~-~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~-~g~i~~Lv~ll~~~~~~ 390 (456)
+++|+||+.+++.+..+++ .|+++.|+.++.++ .++..|+++|++|+. ++...+.+++ .|+++.|+.+++++ +.
T Consensus 644 ~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~ 722 (810)
T 3now_A 644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SP 722 (810)
T ss_dssp HHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SH
T ss_pred HHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CH
Confidence 9999999999999988886 69999999999875 688999999999999 6888888888 89999999999976 49
Q ss_pred hHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC---CHHHHHHHHHHHHHHhcc
Q 012813 391 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG---TARAKRKATGILERLKRT 449 (456)
Q Consensus 391 ~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~---~~~~k~~A~~~L~~l~~~ 449 (456)
.++..|+++|.|++.++.+.. ..+.+.|++++|..|++.. +.++.+.|..+|+++-++
T Consensus 723 ~vq~~A~~aL~NL~~~s~e~~-~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 723 AVQHRGIVIILNMINAGEEIA-KKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHHHHHHHHHTTCHHHH-HHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHH-HHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 999999999999998776654 4455679999999998654 678999999999998654
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=2.7e-25 Score=207.94 Aligned_cols=239 Identities=21% Similarity=0.291 Sum_probs=214.7
Q ss_pred CchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc-hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Q 012813 206 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 284 (456)
Q Consensus 206 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~ 284 (456)
|.++.|+.+|. +.+++++..|+.+|.+++..+. ++..+++. |+++.|+.+|++++.+++..++++|.+|+..
T Consensus 2 ~~i~~L~~~L~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 2 NDVEKLVKLLT------STDSETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASG 74 (252)
T ss_dssp CHHHHHHHHTT------CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 67899999998 5578999999999999988776 78888876 5899999999999999999999999999987
Q ss_pred -CccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhc-cCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHH
Q 012813 285 -DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC-ITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 360 (456)
Q Consensus 285 -~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~ 360 (456)
++++..+.+.|+++.|+.+|.++++.++..|+++|.+|+ ..++++..+++.|+++.|++++.++ .++..++++|.+
T Consensus 75 ~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 75 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 688899999999999999999999999999999999999 5667888899999999999999876 689999999999
Q ss_pred hhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHH
Q 012813 361 LSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA 439 (456)
Q Consensus 361 L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A 439 (456)
|+.+ ++.+..+.+.|+++.|+.++.++ ++.++..|+++|.+|+..++...+.++ +.|+++.|..+++++++.+++.|
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a 232 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKEA 232 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHCCCcHHHHHHH
Confidence 9985 66678889999999999999965 489999999999999997776555555 56999999999999999999999
Q ss_pred HHHHHHHhcchhcc
Q 012813 440 TGILERLKRTVNLT 453 (456)
Q Consensus 440 ~~~L~~l~~~~~~~ 453 (456)
.++|.|+..+....
T Consensus 233 ~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 233 QRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHHTCBCC
T ss_pred HHHHHHHHcCCCcc
Confidence 99999999876554
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=6.6e-25 Score=228.59 Aligned_cols=280 Identities=15% Similarity=0.169 Sum_probs=245.8
Q ss_pred hhhhhHHHHHHHhcCC--chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHc
Q 012813 161 ADRDHFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 238 (456)
Q Consensus 161 ~~~~~i~~Lv~~L~~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 238 (456)
...+.++.|++.|.++ ...+..|++.|.+++..+++++..+.+ .|+++.|+.+|. +.++.+++.|+++|.+
T Consensus 114 ~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~------~~~~~v~~~a~~aL~~ 186 (528)
T 4b8j_A 114 IQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVID-HGAVPIFVKLLG------SSSDDVREQAVWALGN 186 (528)
T ss_dssp HHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-CCcHHHHHHHhc------CCCHHHHHHHHHHHHH
Confidence 4568899999999753 688999999999999988899999999 899999999999 5578999999999999
Q ss_pred cccCcc-hhHHHhcCCCCHHHHHHHH-hcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHH
Q 012813 239 LSIHDN-NKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVA 316 (456)
Q Consensus 239 Ls~~~~-~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~ 316 (456)
++.+.. ++..+... |+++.|+.+| .+.+..++..++++|.+|+............|+++.|+.+|.++++.++..|+
T Consensus 187 l~~~~~~~~~~i~~~-g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 265 (528)
T 4b8j_A 187 VAGDSPKCRDLVLAN-GALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDAC 265 (528)
T ss_dssp HHHTCHHHHHHHHHT-TCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHH
T ss_pred HhCCChhhHHHHHHC-CcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 997754 57777766 5899999999 56789999999999999998765555556689999999999999999999999
Q ss_pred HHHHHhccCchhh-HHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhH
Q 012813 317 SAIFNLCITHENK-ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRN 392 (456)
Q Consensus 317 ~aL~~L~~~~~~~-~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 392 (456)
++|.+|+.....+ ..+++.|+++.|+.+|.++ .++..|+.+|.+|+.+ +.....+.+.|+++.|+.+|.++.++.+
T Consensus 266 ~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 345 (528)
T 4b8j_A 266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSI 345 (528)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHH
Confidence 9999999887665 4567889999999999976 6889999999999984 6778888999999999999997635899
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 393 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 393 ~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
+..|+++|.||+..++.....++. .|+++.|+.++.++++.++..|.++|.++...
T Consensus 346 ~~~A~~~L~nl~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 346 KKEACWTISNITAGNKDQIQAVIN-AGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999999999999987766555654 59999999999999999999999999999865
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=1.6e-25 Score=232.39 Aligned_cols=290 Identities=13% Similarity=0.158 Sum_probs=244.0
Q ss_pred ccchhhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHH
Q 012813 158 ITEADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTL 236 (456)
Q Consensus 158 ~~~~~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L 236 (456)
....+.|+++.|++.|++ +...++.|+++|.+++.+++.+|..+.+ .|+++.|+.+|..... .......+..++++|
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~-~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDL-STLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCG-GGSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccc-hhhhHHHHHHHHHHH
Confidence 345677899999999975 4788999999999999988999999999 8999999999985321 011345678999999
Q ss_pred HccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCcc-chhhcccCccHHHHhccccCChhHHHHH
Q 012813 237 LNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDEGHQSAMKDV 315 (456)
Q Consensus 237 ~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~-~~~i~~~G~i~~Lv~lL~~~~~~~~~~a 315 (456)
.+++.+......+....+++|.|+.+|.+++.+++..++++|.+|+...++ ...+.+.|+++.|+.+|.+.+..++..+
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 294 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHH
Confidence 999988765444433335899999999999999999999999999987654 4566788999999999999999999999
Q ss_pred HHHHHHhccCc-hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChh
Q 012813 316 ASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDR 391 (456)
Q Consensus 316 ~~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 391 (456)
+++|+|++... ..+..+++.|+++.|+.+|.++ .++..|+++|.+|+.+ ++.+..+.+.|+++.|+.++++++ ..
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~ 373 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FK 373 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HH
T ss_pred HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HH
Confidence 99999998765 4667778999999999999876 6789999999999985 677888899999999999999764 99
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 392 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 392 ~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
++..|+++|.|++..........+.+.|++++|..|+.+.++.++..+.++|.|+.++.
T Consensus 374 v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999998654333344445699999999999999999999999999987653
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.3e-24 Score=203.26 Aligned_cols=237 Identities=21% Similarity=0.281 Sum_probs=212.4
Q ss_pred hhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 164 DHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 164 ~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
+.++.|++.|.+ +.+.+..|++.|.+++..++.++..+.+ .|+++.|+.+|. +.+++++..|+++|.+++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVD-AGGVEVLVKLLT------STDSEVQKEAARALANIASG 74 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHh------CCCHHHHHHHHHHHHHHHcC
Confidence 468899999964 4678999999999999988789999998 899999999999 55799999999999999998
Q ss_pred -cchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CCccchhhcccCccHHHHhccccCChhHHHHHHHHHH
Q 012813 243 -DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 320 (456)
Q Consensus 243 -~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~ 320 (456)
++++..+... |+++.|+.+|++++++++..++++|.+|+. .++++..+.+.|+++.|+++|.++++.++..|+++|+
T Consensus 75 ~~~~~~~~~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 75 PDEAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp CHHHHHHHHHT-THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5677888776 589999999999999999999999999994 5678888999999999999999999999999999999
Q ss_pred HhccCch-hhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHH
Q 012813 321 NLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 396 (456)
Q Consensus 321 ~L~~~~~-~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 396 (456)
+|+...+ .+..+++.|+++.|++++.++ .++..|+.+|.+|+. +++.+..+.+.|+++.|+.+++++ ++.+++.|
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a 232 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEA 232 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHH
Confidence 9998654 557788999999999999975 689999999999998 577888999999999999999976 48999999
Q ss_pred HHHHHHHhccChh
Q 012813 397 IAILHTICLSDRT 409 (456)
Q Consensus 397 ~~~L~~l~~~~~~ 409 (456)
+++|.+|+...+.
T Consensus 233 ~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 233 QRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHTCBC
T ss_pred HHHHHHHHcCCCc
Confidence 9999999987653
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=7.2e-25 Score=205.75 Aligned_cols=236 Identities=15% Similarity=0.260 Sum_probs=209.1
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHcc-ccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL-SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 283 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L-s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~ 283 (456)
....+.++.+|+ +.+++++..|+.+|.++ +.+++++..+++. |++|.|+.+|++++++++..|+++|.+++.
T Consensus 11 ~~~~~~~~~~L~------s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 11 GSELPQMTQQLN------SDDMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp TCSHHHHHHHHH------SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHc------CCCHHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 356788899998 66889999999999765 4455677788876 589999999999999999999999999998
Q ss_pred -CCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhh-HHHHhcCcHHHHHHHHcCC--chHHHHHHHHH
Q 012813 284 -LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENK-ARAVRDGGVSVILKKIMDG--VHVDELLAILA 359 (456)
Q Consensus 284 -~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~-~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~ 359 (456)
.++++..+.+.|+++.|+.+|.++++.+++.|+++|++|+...+++ ..+++.|+++.|+++|.++ .++..|+++|.
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999988 7888999999999999876 67899999999
Q ss_pred HhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHH
Q 012813 360 MLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRK 438 (456)
Q Consensus 360 ~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~ 438 (456)
+|+.+ ++.+..+.+.|+++.|+.++.++ ++.+++.|+++|.+|+..++...+.++ +.|+++.|..+++++++.+++.
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~ 241 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQLQSHENEKIQKE 241 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHTTTTCSSSHHHHT
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHhCCCCHHHHHH
Confidence 99985 67788888999999999999976 599999999999999988776655555 5699999999999999999999
Q ss_pred HHHHHHHHhcc
Q 012813 439 ATGILERLKRT 449 (456)
Q Consensus 439 A~~~L~~l~~~ 449 (456)
|.++|.+|++|
T Consensus 242 A~~~L~~l~~~ 252 (252)
T 4db8_A 242 AQEALEKLQSH 252 (252)
T ss_dssp HHHHHHTTC--
T ss_pred HHHHHHHHhcC
Confidence 99999999764
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=1.1e-24 Score=204.62 Aligned_cols=234 Identities=14% Similarity=0.231 Sum_probs=207.0
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
...++.+++.|.+ +.+.+..|++.|+++...++.++..+.+ .|+++.|+.+|+ +.+++++..|+++|.+++.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~-~g~i~~L~~lL~------~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLS------SPNEQILQEALWALSNIAS 83 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHGGG------CSCHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHH-cCcHHHHHHHHc------CCCHHHHHHHHHHHHHHhc
Confidence 3457888999964 5789999999997766556778888888 899999999999 5578999999999999998
Q ss_pred C-cchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccc-hhhcccCccHHHHhccccCChhHHHHHHHHH
Q 012813 242 H-DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASAI 319 (456)
Q Consensus 242 ~-~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL 319 (456)
+ ++++..+... |++|.|+.+|++++++++..|+++|.+|+..++++ ..+.+.|+++.|+++|.+++..++..|+++|
T Consensus 84 ~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 162 (252)
T 4db8_A 84 GGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (252)
T ss_dssp SCHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5 5678888776 58999999999999999999999999999988888 7888999999999999999999999999999
Q ss_pred HHhccCc-hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHH
Q 012813 320 FNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN 395 (456)
Q Consensus 320 ~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 395 (456)
++|+... +++..+++.|+++.|+++|.++ .+++.|+++|.+|+. +++.+..+.+.|+++.|+.+++++ ++.+++.
T Consensus 163 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~ 241 (252)
T 4db8_A 163 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKE 241 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHT
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHH
Confidence 9999855 5667778899999999999876 678999999999996 578888999999999999999976 4899999
Q ss_pred HHHHHHHHhc
Q 012813 396 CIAILHTICL 405 (456)
Q Consensus 396 A~~~L~~l~~ 405 (456)
|+++|.+|+.
T Consensus 242 A~~~L~~l~~ 251 (252)
T 4db8_A 242 AQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTC-
T ss_pred HHHHHHHHhc
Confidence 9999999985
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.93 E-value=7.1e-24 Score=220.96 Aligned_cols=279 Identities=14% Similarity=0.094 Sum_probs=244.8
Q ss_pred hhhhhHHHHHHHhcC--CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHc
Q 012813 161 ADRDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 238 (456)
Q Consensus 161 ~~~~~i~~Lv~~L~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 238 (456)
...+.++.|++.|.+ +...+..|++.|.+++..++..+..+.+ .|+++.|+.+|. +.++++++.|+++|.+
T Consensus 127 ~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~------~~~~~vr~~A~~aL~~ 199 (530)
T 1wa5_B 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLY------TGSVEVKEQAIWALGN 199 (530)
T ss_dssp HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHH------HCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHHH
Confidence 346889999999975 4678999999999999988888888888 899999999998 4578999999999999
Q ss_pred cccCc-chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccCChhHHHHHH
Q 012813 239 LSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVA 316 (456)
Q Consensus 239 Ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~ 316 (456)
++.+. .++..+... |+++.|+.+|.+++..++..++++|.+|+... .........|+++.|+.+|.++++.++..|+
T Consensus 200 l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~ 278 (530)
T 1wa5_B 200 VAGDSTDYRDYVLQC-NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 278 (530)
T ss_dssp HHTTCHHHHHHHHHT-TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHH
T ss_pred HhCCCccchHHHHHc-CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHH
Confidence 99875 467777765 58999999999999999999999999999865 5555566689999999999999999999999
Q ss_pred HHHHHhccCc-hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhH
Q 012813 317 SAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRN 392 (456)
Q Consensus 317 ~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 392 (456)
++|.+|+... +....+++.|+++.|+.+|.++ .++..|+.+|.+++.+ ++....+.+.|+++.|+.+|.++ ++.+
T Consensus 279 ~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v 357 (530)
T 1wa5_B 279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENI 357 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHH
T ss_pred HHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHH
Confidence 9999999765 4567778889999999999876 6789999999999975 66777888899999999999976 4899
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 393 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 393 ~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
+..|+++|.+|+.+++...+.++ ..|+++.|+.++.++++.++..|+++|.++...
T Consensus 358 r~~A~~aL~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 358 KKEACWTISNITAGNTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999998876666666 469999999999999999999999999999764
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=7.8e-24 Score=220.48 Aligned_cols=278 Identities=15% Similarity=0.194 Sum_probs=237.7
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCc-hhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
...++.+++.|.+ ++..+..|++.|+++..... .....+.+ .|+++.|+.+|.+. .++.++..|+++|.+++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~-~g~v~~Lv~lL~~~-----~~~~v~~~A~~~L~~l~ 146 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ-SGVVPRFVQFLTRE-----DFPQLQFEAAWALTNIA 146 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHH-TTCHHHHHHHHTCT-----TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHH-CCCHHHHHHHhCCC-----CCHHHHHHHHHHHHHHh
Confidence 3468899999964 47789999999999876544 56677788 89999999999832 23899999999999999
Q ss_pred cCc-chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhcc-ccCChhHHHHHHH
Q 012813 241 IHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLL-DEGHQSAMKDVAS 317 (456)
Q Consensus 241 ~~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL-~~~~~~~~~~a~~ 317 (456)
.+. +++..++.. |++|.|+.+|.+++..++..|+++|.+|+... .++..+...|+++.|+.+| .+.+..++..|++
T Consensus 147 ~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~ 225 (528)
T 4b8j_A 147 SGTSENTKVVIDH-GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATW 225 (528)
T ss_dssp TSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHhC-CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHH
Confidence 874 577777776 58999999999999999999999999999764 5688888899999999999 5678899999999
Q ss_pred HHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH-HHHHHHhhCcHHHHHHHhhhcCChhHHH
Q 012813 318 AIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRESTCDRNKE 394 (456)
Q Consensus 318 aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 394 (456)
+|++|+............|+++.|+++|.++ .++..|+++|.+|+.+++ ....+.+.|+++.|+.+|.+++ +.++.
T Consensus 226 ~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~ 304 (528)
T 4b8j_A 226 TLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS-PSVLI 304 (528)
T ss_dssp HHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC-HHHHH
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC-hhHHH
Confidence 9999999866566666789999999999865 688999999999998754 4567788999999999999764 89999
Q ss_pred HHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcc
Q 012813 395 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRT 449 (456)
Q Consensus 395 ~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~-~~~~k~~A~~~L~~l~~~ 449 (456)
.|+++|.+|+.+.+...+.++ ..|+++.|..++.++ ++.++..|+++|.|+...
T Consensus 305 ~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 305 PALRTVGNIVTGDDAQTQCII-DHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 999999999998876555555 569999999999999 999999999999999853
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=8e-23 Score=207.73 Aligned_cols=275 Identities=15% Similarity=0.145 Sum_probs=237.7
Q ss_pred hhHHHHHHHhcC--CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 164 DHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 164 ~~i~~Lv~~L~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
+.++.|++.|.+ +...+..|++.|.+++..+++....+.+ .|+++.|+.+|+ +.++++++.|+++|.+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~------~~~~~vr~~a~~~L~~l~~ 136 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLS------SEFEDVQEQAVWALGNIAG 136 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh-CCCHHHHHHHHc------CCCHHHHHHHHHHHHHHcc
Confidence 789999999964 4678999999999999977777777887 899999999999 5589999999999999998
Q ss_pred Ccc-hhHHHhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccCC--ccchhhcccCccHHHHhccccCChhHHHHHHH
Q 012813 242 HDN-NKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 317 (456)
Q Consensus 242 ~~~-~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~aL~~Ls~~~--~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~ 317 (456)
+.. .+..+... |+++.|+.+|++ .+..++..++++|.+|+... ..+..+. .|+++.|+.+|.++++.++..+++
T Consensus 137 ~~~~~~~~~~~~-~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~ 214 (450)
T 2jdq_A 137 DSTMCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACW 214 (450)
T ss_dssp TCHHHHHHHHHT-TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHH
Confidence 764 66667765 589999999996 68999999999999999754 3333333 799999999999999999999999
Q ss_pred HHHHhccCc-hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHH
Q 012813 318 AIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNK 393 (456)
Q Consensus 318 aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 393 (456)
+|.+|+... +++..++..|+++.|+++|.++ .++..|+.+|.+++.+ ++.++.+.+.|+++.|+.++.++ ++.++
T Consensus 215 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr 293 (450)
T 2jdq_A 215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIK 293 (450)
T ss_dssp HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHH
T ss_pred HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHH
Confidence 999999865 5667777889999999999865 6789999999999986 55667788889999999999975 48999
Q ss_pred HHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 394 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 394 ~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
..|+++|.+|+.+.+...+.++. .++++.|+.++.++++.++..|+++|.++...
T Consensus 294 ~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 294 KEACWTISNITAGNRAQIQTVID-ANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999999999877766556554 59999999999999999999999999999753
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=5.3e-23 Score=214.36 Aligned_cols=278 Identities=14% Similarity=0.227 Sum_probs=237.6
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcC-chhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
.+.++.+++.|.+ ++..+..|+..|+.+.... ...+..+.+ .|+++.|+.+|.+. .++.++..|+++|.+++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~-~g~i~~Lv~~L~~~-----~~~~v~~~A~~~L~~l~ 159 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQ-AGVVPRLVEFMREN-----QPEMLQLEAAWALTNIA 159 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHH-TTCHHHHHHTTSTT-----SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHH-CCCHHHHHHHhCCC-----CCHHHHHHHHHHHHHHh
Confidence 3468899999965 4678999999999986532 344566777 79999999999831 27899999999999999
Q ss_pred cCcc-hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccCChhHHHHHHHH
Q 012813 241 IHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 318 (456)
Q Consensus 241 ~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~a 318 (456)
.+.. .+..++.. |++|.|+.+|++++++++..|+++|.+|+... +++..+...|+++.|+.+|.+.+..++..|+++
T Consensus 160 ~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 238 (530)
T 1wa5_B 160 SGTSAQTKVVVDA-DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238 (530)
T ss_dssp TSCHHHHHHHHHT-TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHH
Confidence 8764 56666665 58999999999999999999999999999864 678888889999999999999899999999999
Q ss_pred HHHhccCc-hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHH
Q 012813 319 IFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKE 394 (456)
Q Consensus 319 L~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 394 (456)
|++|+... .........|+++.|+.+|.++ .++..++++|.+|+.. ++.+..+.+.|+++.|+.++.+. ++.++.
T Consensus 239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~ 317 (530)
T 1wa5_B 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQT 317 (530)
T ss_dssp HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHH
T ss_pred HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHH
Confidence 99999876 5555666789999999999875 6788999999999986 66788888999999999999865 489999
Q ss_pred HHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 395 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 395 ~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
.|+++|.+|+.+.+...+.++ ..|+++.|..+++++++.++..|.++|.++...
T Consensus 318 ~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 318 PALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKENIKKEACWTISNITAG 371 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999998876555555 459999999999999999999999999999853
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=9e-23 Score=207.35 Aligned_cols=279 Identities=14% Similarity=0.104 Sum_probs=240.5
Q ss_pred hhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 162 DRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 162 ~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
..+.++.|++.|++ +...+..|++.|.+++..++.++..+.+ .|+++.|+.++.+ +.+..++..|+++|.+++
T Consensus 105 ~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~-----~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 105 QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD-CNILPPLLQLFSK-----QNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTTS-----CCCHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHh
Confidence 45789999999975 4778999999999999988888988888 8999999999983 247899999999999999
Q ss_pred cCc-c-hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccCChhHHHHHHH
Q 012813 241 IHD-N-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 317 (456)
Q Consensus 241 ~~~-~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~ 317 (456)
.+. . ....+. .+++|.|+.++.+++..++..++++|.+|+... ++...+...|+++.|+.+|.+.+..++..|++
T Consensus 179 ~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 179 RGKSPPPEFAKV--SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp CCSSSCCCGGGT--GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCCCHHHH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence 765 2 333333 358999999999999999999999999999854 56667778899999999999999999999999
Q ss_pred HHHHhccCchh-hHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcCChhHH
Q 012813 318 AIFNLCITHEN-KARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNK 393 (456)
Q Consensus 318 aL~~L~~~~~~-~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 393 (456)
+|.+|+...+. +..+++.|+++.|+++|.++ .++..|+++|.+++. +++....+.+.|+++.|+.++.+++ +.++
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~ 335 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE-FRTR 335 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHH
Confidence 99999987654 44567889999999999876 678999999999997 5777888888999999999999764 8999
Q ss_pred HHHHHHHHHHhcc-ChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 394 ENCIAILHTICLS-DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 394 ~~A~~~L~~l~~~-~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
..|+++|.+++.. ++...+.++ +.|+++.|..++.++++++++.|.++|.++....
T Consensus 336 ~~a~~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 336 KEAAWAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999986 555555565 4699999999999999999999999999997654
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=1.3e-23 Score=218.13 Aligned_cols=277 Identities=18% Similarity=0.182 Sum_probs=241.4
Q ss_pred hhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 162 DRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 162 ~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
..+.++.|++.|++ ++..+..|+..|.+++.. +.++..+....|+++.|+.+|.+ +.+++++..|+.+|.+|+
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~-----~~~~~~~~~a~~~L~~ls 88 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTAGTLHNLS 88 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHT
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhc-----CCCHHHHHHHHHHHHHHH
Confidence 36789999999964 578899999999999984 56776666535899999999974 337899999999999999
Q ss_pred cCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccCChhHHHHHHHHH
Q 012813 241 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 319 (456)
Q Consensus 241 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL 319 (456)
.+++++..+.+. |++|.|+.+|+++++.++..++++|.+|+..+ +.+..+.+.|+++.|+++|.+++.+++..++.+|
T Consensus 89 ~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 89 HHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp TSHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred cCchhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 998899999987 58999999999999999999999999999874 5677788899999999999999999999999999
Q ss_pred HHhccC-chhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHH
Q 012813 320 FNLCIT-HENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN 395 (456)
Q Consensus 320 ~~L~~~-~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 395 (456)
.+|+.. ++++..+++.|+++.|+++|.++ .....++.+|.+|+.+++++..+.+.|+++.|+.++.++ ++.+++.
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~ 246 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQN 246 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHH
Confidence 999975 67888899999999999999865 456778999999999999999999999999999999876 4899999
Q ss_pred HHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 396 CIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 396 A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
|+++|.+|+...+.. .. ..++++.|++++.++++.++..|.++|.+++...
T Consensus 247 a~~~L~~l~~~~~~~--~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 297 (529)
T 1jdh_A 247 CLWTLRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp HHHHHHHHHTTCTTC--SC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCChhh--HH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 999999999876532 11 2478999999999999999999999999998753
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=2.3e-23 Score=222.22 Aligned_cols=276 Identities=18% Similarity=0.187 Sum_probs=242.4
Q ss_pred hhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 162 DRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 162 ~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
..+.++.|++.|++ +...+..|+..|.+++.. ..++..+....|+++.|+.+|.+ +.+++++..|+.+|.+|+
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~-~~~~~~i~~~~~~i~~Lv~~L~~-----~~~~~~~~~A~~~L~~Ls 85 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTAGTLHNLS 85 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-TTHHHHHTTCHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHT
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCC-ChhHHHHHhccChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHh
Confidence 46789999999974 578899999999999995 45676666535899999999984 237899999999999999
Q ss_pred cCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccCChhHHHHHHHHH
Q 012813 241 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 319 (456)
Q Consensus 241 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL 319 (456)
.+++++..+.+. |++|.|+.+|+++++.++..|+++|.+|+... ..+..+.+.|+++.|+++|++++.+++..++.+|
T Consensus 86 ~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 164 (644)
T 2z6h_A 86 HHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 164 (644)
T ss_dssp TSHHHHHHHHTT-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred cChhhHHHHHHc-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence 998899988887 68999999999999999999999999999864 5677788899999999999999988889999999
Q ss_pred HHhcc-CchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHH
Q 012813 320 FNLCI-THENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN 395 (456)
Q Consensus 320 ~~L~~-~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 395 (456)
.+|+. +++++..+++.|+++.|+++|.+. ..++.++.+|++|+.+++++..+++.|+++.|+.++..+ ++.+++.
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~ 243 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQN 243 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-CHHHHHH
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-CHHHHHH
Confidence 99996 678999999999999999999865 467889999999999999999999999999999999876 4899999
Q ss_pred HHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 396 CIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 396 A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
|+++|.+|+...+.. .. ..++++.|+.++.++++.+++.|+++|.+|+..
T Consensus 244 a~~~L~nL~~~~~~~--~~--~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 244 CLWTLRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHHHHHGGGCTTC--CS--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcchhh--hh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999876432 11 237899999999999999999999999999875
No 27
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=5e-24 Score=196.43 Aligned_cols=193 Identities=17% Similarity=0.234 Sum_probs=168.7
Q ss_pred CchhhhhhccccccccCCCCh--hhHHHHHHHHHccccCc-chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 012813 206 DAIPQLLSPLSESKCENGINP--NLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS 282 (456)
Q Consensus 206 g~i~~Lv~lL~~~~~~~~~~~--~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls 282 (456)
-.++.|+.+|++ .++ +++..|++.|.+++.++ +++..+.+. |++|.|+++|++++.++++.|+++|.||+
T Consensus 8 ~~i~~lV~lL~s------~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 8 MTLERAVSMLEA------DHMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp CCHHHHHHTCCS------SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCC------CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 358899999984 455 88999999999999654 588888887 47999999999999999999999999999
Q ss_pred c-CCccchhhcccCccHHHHhcccc-CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc--------------
Q 012813 283 A-LDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM-------------- 346 (456)
Q Consensus 283 ~-~~~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~-------------- 346 (456)
. +++|+..|.+.|+|+.|+++|.+ ++.++++.|+.+|+||+..+++|..+++. ++|+|++++.
T Consensus 81 ~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 81 FEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred hCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccc
Confidence 8 56899999999999999999984 78999999999999999999999999875 7999998763
Q ss_pred ----CCchHHHHHHHHHHhhC-CHHHHHHHHhh-CcHHHHHHHhhhc-----CChhHHHHHHHHHHHHhcc
Q 012813 347 ----DGVHVDELLAILAMLST-NHRAVEEIGDL-GGVSCMLRIIRES-----TCDRNKENCIAILHTICLS 406 (456)
Q Consensus 347 ----~~~~~~~a~~~L~~L~~-~~~~~~~i~~~-g~i~~Lv~ll~~~-----~~~~~~~~A~~~L~~l~~~ 406 (456)
+..++++|..+|+||+. ++++|+.+.++ |+|+.||.+++.+ .+++.+|+|+.+|+||+.+
T Consensus 160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 11578899999999998 57999999987 6689999999963 2468899999999999975
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=2.7e-22 Score=208.23 Aligned_cols=281 Identities=15% Similarity=0.120 Sum_probs=239.4
Q ss_pred chhhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHc
Q 012813 160 EADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 238 (456)
Q Consensus 160 ~~~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 238 (456)
..+.+.++.|++.|++ ++..+..|++.|.+++..++..+..+.+ .|+++.|+.+|. +.+.+++..++.+|.+
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~------~~~~~~~~~~~~~L~~ 169 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLN------KTNVKFLAITTDCLQI 169 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGG------CCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHh------cCCHHHHHHHHHHHHH
Confidence 4456899999999965 4678999999999999987788888888 899999999998 4578899999999999
Q ss_pred cccC-cchhHHHhcCCCCHHHHHHHHhcCC-HHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHH
Q 012813 239 LSIH-DNNKKLVAETPMVIPLLMDALRSGT-IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVA 316 (456)
Q Consensus 239 Ls~~-~~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~ 316 (456)
++.+ ++++..+... |+++.|+.+|++++ ...+..++.+|.+|+..++++..+.+.|+++.|+.++.++++.++..++
T Consensus 170 la~~~~~~~~~i~~~-~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 170 LAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp HHTTCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHC-CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 9976 4577788876 57999999999875 5677778899999999999999999999999999999999999999999
Q ss_pred HHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhc-CChhH
Q 012813 317 SAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES-TCDRN 392 (456)
Q Consensus 317 ~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~ 392 (456)
++|.+|+....... ...|++|.|+++|.++ .+++.|+++|.+|+.+ ++.+..+.+.|+++.|+.++.+. .++.+
T Consensus 249 ~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v 326 (529)
T 1jdh_A 249 WTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326 (529)
T ss_dssp HHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHH
Confidence 99999998764322 2347899999999865 6889999999999986 67999999999999999999863 23789
Q ss_pred HHHHHHHHHHHhccChh--hHHHHHHhhccHHHHHHHhhcCC-HHHHHHHHHHHHHHhcch
Q 012813 393 KENCIAILHTICLSDRT--KWKAMREEESTHGTISKLAQDGT-ARAKRKATGILERLKRTV 450 (456)
Q Consensus 393 ~~~A~~~L~~l~~~~~~--~~~~~~~~~g~~~~L~~Ll~~~~-~~~k~~A~~~L~~l~~~~ 450 (456)
++.|+++|++|+..++. ..+..+...|+++.|..++++++ +.++..|.++|+|+...+
T Consensus 327 ~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~ 387 (529)
T 1jdh_A 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387 (529)
T ss_dssp HHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh
Confidence 99999999999987543 23344445699999999999876 589999999999998653
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=7.4e-22 Score=210.60 Aligned_cols=281 Identities=15% Similarity=0.120 Sum_probs=239.1
Q ss_pred chhhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHc
Q 012813 160 EADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 238 (456)
Q Consensus 160 ~~~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 238 (456)
..+.+.++.|++.|++ +...+..|++.|.+++..++..+..+.+ .|+++.|+.+|+ +.++.++..++.+|.+
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~------~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLN------KTNVKFLAITTDCLQI 166 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGG------CCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHC------cCCHHHHHHHHHHHHH
Confidence 4456889999999975 4678999999999999987778888888 899999999999 4467788888889999
Q ss_pred ccc-CcchhHHHhcCCCCHHHHHHHHhcCC-HHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHH
Q 012813 239 LSI-HDNNKKLVAETPMVIPLLMDALRSGT-IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVA 316 (456)
Q Consensus 239 Ls~-~~~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~ 316 (456)
++. +++++..+... |+++.|+.+|++++ ...+..++.+|.+|+..++++..+.+.|+++.|+.++.+++..++..++
T Consensus 167 La~~~~~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~ 245 (644)
T 2z6h_A 167 LAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245 (644)
T ss_dssp HHTTCHHHHHHHHHT-THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHH
T ss_pred HHhcCcHHHHHHHHc-CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 997 55688888877 58999999999875 6788999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCC-hhH
Q 012813 317 SAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTC-DRN 392 (456)
Q Consensus 317 ~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~ 392 (456)
++|.+|+...... ....++++.|+++|.++ .+++.|+++|.+|+.+ ++.+..+.+.|+++.|+.++.+..+ +.+
T Consensus 246 ~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v 323 (644)
T 2z6h_A 246 WTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 323 (644)
T ss_dssp HHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHH
Confidence 9999999765332 22347899999999865 6789999999999996 6789999999999999999987432 689
Q ss_pred HHHHHHHHHHHhccChh--hHHHHHHhhccHHHHHHHhhcCC-HHHHHHHHHHHHHHhcch
Q 012813 393 KENCIAILHTICLSDRT--KWKAMREEESTHGTISKLAQDGT-ARAKRKATGILERLKRTV 450 (456)
Q Consensus 393 ~~~A~~~L~~l~~~~~~--~~~~~~~~~g~~~~L~~Ll~~~~-~~~k~~A~~~L~~l~~~~ 450 (456)
++.|+++|.+|+...+. ..+..+...|+++.|.+++.+.+ +.+++.|.++|.|+....
T Consensus 324 ~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 324 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp HHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence 99999999999986542 33444445699999999998875 689999999999998654
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=4e-22 Score=181.77 Aligned_cols=195 Identities=14% Similarity=0.265 Sum_probs=173.9
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhcc-CchhhH
Q 012813 253 PMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI-THENKA 330 (456)
Q Consensus 253 ~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~ 330 (456)
++..|.|+.+|++++++++..|+++|.+|+. .++++..+.+.|+++.|+++|.++++.++..|+++|.+|+. .++++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3578999999999999999999999999995 45778889999999999999999999999999999999995 557888
Q ss_pred HHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccC
Q 012813 331 RAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 331 ~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 407 (456)
.+++.|+++.|+++|.++ .++..|+++|.+|+. +++.+..+.+.|+++.|+.+++++ ++.+++.|+++|.+|+..+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC
Confidence 889999999999999976 678999999999997 467778889999999999999976 4999999999999999987
Q ss_pred hhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 408 RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 408 ~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
+.... .+.+.|+++.|..+++++++.+++.|.++|++|+.+
T Consensus 170 ~~~~~-~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 170 NEQKQ-AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHH-HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred cHHHH-HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 76544 444569999999999999999999999999999764
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=5e-23 Score=189.72 Aligned_cols=195 Identities=16% Similarity=0.167 Sum_probs=170.1
Q ss_pred CCHHHHHHHHhcCCH--HHHHHHHHHHHHhcc-CCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhcc-Cchhh
Q 012813 254 MVIPLLMDALRSGTI--ETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI-THENK 329 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~--~~~~~aa~aL~~Ls~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~ 329 (456)
-.+|.|+.+|.++++ +++..|+++|.+|+. +++++..|.+.|+||.|+++|+++++++++.|+++|.||+. +++|+
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368999999999987 899999999999996 56789999999999999999999999999999999999998 57899
Q ss_pred HHHHhcCcHHHHHHHHcC-C--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhh---hc------------CChh
Q 012813 330 ARAVRDGGVSVILKKIMD-G--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR---ES------------TCDR 391 (456)
Q Consensus 330 ~~~v~~g~v~~Lv~lL~~-~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~---~~------------~~~~ 391 (456)
..+++.|+||.|+++|.+ + ..++.|+.+|++|+.++++|..+.+. +++.|++++. ++ .++.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999973 3 68999999999999999999988875 6999987653 12 1358
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC------CHHHHHHHHHHHHHHhcc
Q 012813 392 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG------TARAKRKATGILERLKRT 449 (456)
Q Consensus 392 ~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~------~~~~k~~A~~~L~~l~~~ 449 (456)
++++|..+|+||+..+++..+.+.+..|+++.|+.+++.+ ++..++.|..+|+||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999987666667776678899999998763 457999999999999853
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=3e-22 Score=217.74 Aligned_cols=276 Identities=18% Similarity=0.189 Sum_probs=241.0
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
.+.++.|++.|.+ +..+|+.|+..|.+++.. ..++..+....|+++.|+.+|++ +.+++++..|+.+|.+|+.
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~-----~~d~~vr~~Aa~aL~~Ls~ 222 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTSGTLHNLSH 222 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcC-----CCCHHHHHHHHHHHHHHhC
Confidence 6789999999964 577899999999999994 56677777535899999999984 3378999999999999999
Q ss_pred CcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccCChhHHHHHHHHHH
Q 012813 242 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 320 (456)
Q Consensus 242 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~ 320 (456)
+++++..+... |++|.|+.+|++++..++..|+++|.+|+... +.+..+.+.|+++.|+++|.+++..++..++.+|.
T Consensus 223 ~~~~~~~i~~~-g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 223 HREGLLAIFKS-GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301 (780)
T ss_dssp SHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 98888888887 68999999999999999999999999999864 56677778999999999999999999999999999
Q ss_pred Hhcc-CchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHH
Q 012813 321 NLCI-THENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 396 (456)
Q Consensus 321 ~L~~-~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 396 (456)
+|+. +.+++..+++.|+++.|+++|.++ ...+.++.+|.+|+.+++.+..+++.|+++.|+.++.++ ++..++.|
T Consensus 302 ~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a 380 (780)
T 2z6g_A 302 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNC 380 (780)
T ss_dssp HHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHH
T ss_pred HHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC-chHHHHHH
Confidence 9996 467899999999999999999875 356779999999999999999999999999999999876 48899999
Q ss_pred HHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 397 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 397 ~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
+++|.+|+...... .. ..++++.|+.++.+.++.+++.|+++|.+|+...
T Consensus 381 ~~~L~~L~~~~~~~--~~--~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 381 LWTLRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp HHHHHHHHTTCTTC--SC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHhccchhh--hh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999876432 11 2478899999999999999999999999998753
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=5.9e-22 Score=215.38 Aligned_cols=271 Identities=15% Similarity=0.200 Sum_probs=222.2
Q ss_pred hhHHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 164 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 164 ~~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
..++.+++.|.+. ...+..++..|+.. ++..+. .|+++.|+.+|. +.++.+++.|+.+|.+|+.+
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~--~g~ip~Lv~lL~------~~d~~vr~~A~~~L~~L~~~ 180 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA--TRAIPELTKLLN------DEDQVVVNKAAVMVHQLSKK 180 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH------HHHHHH--HHHHHHHHHHHH------CSCHHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH--hCCHHHHHHHHC------CCCHHHHHHHHHHHHHHhCC
Confidence 3578899999754 55566666666533 233444 589999999998 56889999999999999998
Q ss_pred cchhHHHhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHH
Q 012813 243 DNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 321 (456)
Q Consensus 243 ~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~ 321 (456)
..++..+...+++++.|+++|+++ +.+++.+|+.+|.+|+..++++..+++.|+|+.|+.+|+++++.++..|+++|.+
T Consensus 181 ~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 181 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 888888887667999999999876 8999999999999999988888899999999999999999999999999999999
Q ss_pred hccCc-hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHH
Q 012813 322 LCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 397 (456)
Q Consensus 322 L~~~~-~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~ 397 (456)
|+... ..+..+++.|+++.|+++|.++ .+.+.++.+|.+++. +++++..+.+.|+++.|+.+++.++....++.|+
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~ 340 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 340 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHH
Confidence 99875 4566666899999999999876 567788899999997 5889999999999999999999876567788999
Q ss_pred HHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 398 AILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 398 ~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
.+|++|+.... ....++ ..|+++.|..++.++++.+++.|.++|.+|+...
T Consensus 341 ~aL~~Ls~~~~-~~~~i~-~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 341 RVLKVLSVCSS-NKPAIV-EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HHHHHHHTSTT-HHHHHH-HTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcChH-HHHHHH-HhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 99999998654 334444 5699999999999999999999999999998654
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.4e-21 Score=205.53 Aligned_cols=281 Identities=13% Similarity=0.100 Sum_probs=229.6
Q ss_pred hhhhhHHHHHHHhcC--CchhHHHHHHHHHHHhhcCc-------------------------------------h-hhhh
Q 012813 161 ADRDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMP-------------------------------------S-FRAL 200 (456)
Q Consensus 161 ~~~~~i~~Lv~~L~~--~~~~~~~a~~~L~~L~~~~~-------------------------------------~-~r~~ 200 (456)
.+.+.++.|++.++. +......++..|.|++...+ + ++..
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 345678889998863 35667778888888876322 1 4567
Q ss_pred hhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHH---HHHHHHHH
Q 012813 201 FGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIE---TRSNAAAA 277 (456)
Q Consensus 201 i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~---~~~~aa~a 277 (456)
+.+ .|+|+.|+.+++ +.++.+++.|+++|.|++.+.++|..++.. |+++.|+.+|.+++.. .+..|+.+
T Consensus 453 l~e-aGvIp~Lv~Ll~------S~s~~~re~A~~aL~nLS~d~~~R~~lvqq-Gal~~LL~lL~s~~~~~~~~k~~AA~A 524 (778)
T 3opb_A 453 ILR-TELISFLKREMH------NLSPNCKQQVVRIIYNITRSKNFIPQLAQQ-GAVKIILEYLANKQDIGEPIRILGCRA 524 (778)
T ss_dssp TTT-TTHHHHHHHHGG------GSCHHHHHHHHHHHHHHHTSGGGHHHHHHT-THHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred HHH-CcCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 778 899999999998 557899999999999999999999999997 5799999999988654 89999999
Q ss_pred HHHhccCCccchhhcc---cCccHHHHhcccc-CCh-------------hHHHHHHHHHHHhccCch-----hhHHHHhc
Q 012813 278 LFTLSALDSNKEVIGK---SGALKPLIDLLDE-GHQ-------------SAMKDVASAIFNLCITHE-----NKARAVRD 335 (456)
Q Consensus 278 L~~Ls~~~~~~~~i~~---~G~i~~Lv~lL~~-~~~-------------~~~~~a~~aL~~L~~~~~-----~~~~~v~~ 335 (456)
|.+|....+....+.. .|+|++|+.||.. ... -.+..|+.||.||+..++ .|..+++.
T Consensus 525 LArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 525 LTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred HHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 9999976665555532 4999999999983 111 126799999999999873 47888985
Q ss_pred -CcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHH-HHHHhh------CcHHHHHHHhhhcCChhHHHHHHHHHHHHhc
Q 012813 336 -GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAV-EEIGDL------GGVSCMLRIIRESTCDRNKENCIAILHTICL 405 (456)
Q Consensus 336 -g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~-~~i~~~------g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 405 (456)
|+++.|..+|.++ .++..|+.+++||+.+++++ +.+.+. +.++.||.++..+ +..+|+.|.++|.+++.
T Consensus 605 ~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts 683 (778)
T 3opb_A 605 KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcC
Confidence 9999999999876 67899999999999999875 455432 2488999999865 59999999999999988
Q ss_pred cChhhHHHHHHhhccHHHHHHHhhc--CCHHHHHHHHHHHHHHhcch
Q 012813 406 SDRTKWKAMREEESTHGTISKLAQD--GTARAKRKATGILERLKRTV 450 (456)
Q Consensus 406 ~~~~~~~~~~~~~g~~~~L~~Ll~~--~~~~~k~~A~~~L~~l~~~~ 450 (456)
..+..++.++...++++.++.+++. +++.++..+..++.||....
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 7777677888777899999999998 89999999999999998643
No 35
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.88 E-value=4.7e-23 Score=218.62 Aligned_cols=120 Identities=24% Similarity=0.331 Sum_probs=99.9
Q ss_pred HHHHHHHHh-hCCCCCHHHHHHHHHHHHHhh---h------h---H--Hhh--hhhhhhhccCCCCCCccccccchhhcc
Q 012813 24 LQKLVRLIV-DDVDYRTETIDQARDTLCALK---E------L---K--TKK--RSLSLKLHETVSCPEEFKCPLSKELMR 86 (456)
Q Consensus 24 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~------~---~--~~~--~~~~~~~~~~~~~p~~f~Cpi~~~~m~ 86 (456)
.++|+++|+ |+|||++++|++|.+++.+.. . + . ... .+....+.+..++|++|+||||+++|+
T Consensus 823 ~~~F~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~ 902 (968)
T 3m62_A 823 QSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMK 902 (968)
T ss_dssp CHHHHHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCS
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHh
Confidence 468999998 679999999999999996521 1 1 0 001 111223345689999999999999999
Q ss_pred CcccCCCC-ccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHcCC
Q 012813 87 DPVILASG-QTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGI 144 (456)
Q Consensus 87 dPv~l~~g-~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~~~ 144 (456)
|||++|+| +||||++|++|+.+ +.+||+||+|++..+++||++||..|++||.+++.
T Consensus 903 DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 903 DPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp SEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred CCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 99999997 79999999999997 68999999999999999999999999999998753
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=1.8e-21 Score=177.46 Aligned_cols=193 Identities=14% Similarity=0.235 Sum_probs=172.4
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc-chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 283 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~ 283 (456)
.|..+.|+.+|+ +.+++++..|+++|.+++.++ +++..+.+. |++|.|+.+|++++++++..|+++|.+|+.
T Consensus 11 ~~~~~~l~~LL~------s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 11 GSELPQMVQQLN------SPDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp --CHHHHHHHTT------CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHhc------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 578899999998 668999999999999999655 567777776 589999999999999999999999999996
Q ss_pred -CCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCc-hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHH
Q 012813 284 -LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILA 359 (456)
Q Consensus 284 -~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~ 359 (456)
.++++..+.+.|+++.|+.+|+++++.++..|+++|+||+... +.+..+++.|+++.|+++|.++ .++..|+++|.
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (210)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5578888999999999999999999999999999999999755 4566778999999999999876 68999999999
Q ss_pred HhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhc
Q 012813 360 MLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 405 (456)
Q Consensus 360 ~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 405 (456)
+|+.+ ++.+..+.+.|+++.|+.++.++ ++.+++.|+++|.+|+.
T Consensus 164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 99997 88899999999999999999965 49999999999999985
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.85 E-value=3.9e-22 Score=154.35 Aligned_cols=76 Identities=37% Similarity=0.609 Sum_probs=71.0
Q ss_pred ccCCCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHcC
Q 012813 67 HETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQG 143 (456)
Q Consensus 67 ~~~~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~~ 143 (456)
.+...+|++|+||||+++|+|||+++|||+|||.+|++|+.. +.+||+|+++++..+++||..|++.|+.|+.+++
T Consensus 6 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 6 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 355679999999999999999999999999999999999996 6899999999999999999999999999998764
No 38
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.85 E-value=7.6e-22 Score=156.59 Aligned_cols=78 Identities=31% Similarity=0.468 Sum_probs=72.6
Q ss_pred cCCCCCCccccccchhhccCcccCCCC-ccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHcCCCC
Q 012813 68 ETVSCPEEFKCPLSKELMRDPVILASG-QTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGIEL 146 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~~~m~dPv~l~~g-~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~~~~~ 146 (456)
...++|++|+||||+++|+|||+++|| |+|||.+|++||.. +.+||+|+++++..+|+||..|++.|+.|+.+++...
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~~ 93 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQS 93 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTCS
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchhh
Confidence 456799999999999999999999999 99999999999987 6799999999999999999999999999999886654
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.85 E-value=4.9e-22 Score=158.31 Aligned_cols=77 Identities=36% Similarity=0.580 Sum_probs=71.6
Q ss_pred ccCCCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHcCC
Q 012813 67 HETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGI 144 (456)
Q Consensus 67 ~~~~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~~~ 144 (456)
.+..++|++|+||||+++|+|||++||||+|||.||++||.. +.+||+|+++++..+|+||..|++.|+.|+.+++.
T Consensus 21 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 355679999999999999999999999999999999999986 68999999999999999999999999999987753
No 40
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.8e-20 Score=194.63 Aligned_cols=275 Identities=12% Similarity=0.123 Sum_probs=220.1
Q ss_pred hHHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 165 HFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 165 ~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
..+.+.+.|..+ .+.+..|+..|..++. +++.|+.+++..|++..|+.++.. ..+..+.-.++.+|.||+...
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~-----~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKS-----QKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTT-----TCCTTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhC-----CCCchHHHHHHHHHHHhcCCC
Confidence 445666677653 4568999999999999 688899998867889999999984 235678888999999986532
Q ss_pred c---------------------------------------hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Q 012813 244 N---------------------------------------NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 284 (456)
Q Consensus 244 ~---------------------------------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~ 284 (456)
+ ++..+.+. |++|.|+.+++++++.++..++++|.+|+.+
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea-GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d 487 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT-ELISFLKREMHNLSPNCKQQVVRIIYNITRS 487 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT-THHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC-cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 2 23444554 6999999999999999999999999999999
Q ss_pred CccchhhcccCccHHHHhccccCChh---HHHHHHHHHHHhccCchhhHHHH--h-cCcHHHHHHHHcC-Cc--------
Q 012813 285 DSNKEVIGKSGALKPLIDLLDEGHQS---AMKDVASAIFNLCITHENKARAV--R-DGGVSVILKKIMD-GV-------- 349 (456)
Q Consensus 285 ~~~~~~i~~~G~i~~Lv~lL~~~~~~---~~~~a~~aL~~L~~~~~~~~~~v--~-~g~v~~Lv~lL~~-~~-------- 349 (456)
.++|..+++.|+++.|+.+|.+++.. ++..|+.+|.+|....+....+- . .|+|++|+++|.. +.
T Consensus 488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~ 567 (778)
T 3opb_A 488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567 (778)
T ss_dssp GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence 99999999999999999999887543 89999999999986554444331 1 3999999999983 21
Q ss_pred ------h-HHHHHHHHHHhhCCH-----HHHHHHHhh-CcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHH
Q 012813 350 ------H-VDELLAILAMLSTNH-----RAVEEIGDL-GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMRE 416 (456)
Q Consensus 350 ------~-~~~a~~~L~~L~~~~-----~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~ 416 (456)
. +..|+.+|.||+..+ +.|..++++ |+++.|+.+|.++ ++.+|+.|++++.||+.......+.++.
T Consensus 568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~ 646 (778)
T 3opb_A 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFN 646 (778)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSC
T ss_pred cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence 1 668999999999975 457878885 9999999999975 4899999999999999865431123331
Q ss_pred -----hhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 417 -----EESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 417 -----~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
..+.++.|+.|+++++.++|+.|+++|.|+.
T Consensus 647 ~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 647 LENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp CSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 1224789999999999999999999999994
No 41
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.84 E-value=3.3e-21 Score=168.41 Aligned_cols=78 Identities=31% Similarity=0.446 Sum_probs=72.5
Q ss_pred cCCCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHcCCC
Q 012813 68 ETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGIE 145 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~~~~ 145 (456)
...++|++|+||||+++|+|||++||||+|||.||++|+..++.+||+|+++++..+++||..|+..|+.|+..+++.
T Consensus 99 ~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 99 KKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp GCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred cccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 456799999999999999999999999999999999999874457999999999999999999999999999998865
No 42
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.81 E-value=3.8e-19 Score=170.56 Aligned_cols=221 Identities=18% Similarity=0.155 Sum_probs=181.0
Q ss_pred hhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHH-HHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhc
Q 012813 226 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMD-ALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDL 303 (456)
Q Consensus 226 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~-lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~l 303 (456)
.+.+..|+..|.++..+.++...+...| ++|.|+. +|+++++.++..|+++|.+++.++ .++..+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678889999999998888888888774 7899999 999999999999999999999865 578889999999999999
Q ss_pred cccC-ChhHHHHHHHHHHHhccCc-hhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhhCcHH
Q 012813 304 LDEG-HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVS 378 (456)
Q Consensus 304 L~~~-~~~~~~~a~~aL~~L~~~~-~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~ 378 (456)
|+++ +..+++.|+++|.||+.+. .+...+++.|++|.|+.+|.++ .++..|+++|.+|+.+ ++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9964 7889999999999999765 4566788899999999999976 6789999999999874 77899999999999
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHh-hccHHHH---HHHhh-cC-CHHHHHHHHHHHHHHhc
Q 012813 379 CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREE-ESTHGTI---SKLAQ-DG-TARAKRKATGILERLKR 448 (456)
Q Consensus 379 ~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~-~g~~~~L---~~Ll~-~~-~~~~k~~A~~~L~~l~~ 448 (456)
.|+.+|.+. ++.+++.|+.+|.+|+...+.....+... ..+...| .+-++ .. +..+.++|..++.++-.
T Consensus 213 ~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCC-ChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 999999976 48999999999999999865432222211 0111222 22234 33 56889999999998753
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.80 E-value=1.1e-18 Score=167.27 Aligned_cols=181 Identities=13% Similarity=0.129 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHHhccCCccchhhcccCccHHHHh-ccccCChhHHHHHHHHHHHhccCc-hhhHHHHhcCcHHHHHHH
Q 012813 267 TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID-LLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKK 344 (456)
Q Consensus 267 ~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~v~~g~v~~Lv~l 344 (456)
+.+.+..|+..|.+++...+|+..+...|+++.|+. +|.++++.+++.|+++|++++.+. ..+..+++.|++|.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 456788899999999998889999999999999999 999999999999999999999865 577788899999999999
Q ss_pred HcCC---chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhcc
Q 012813 345 IMDG---VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEEST 420 (456)
Q Consensus 345 L~~~---~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~ 420 (456)
|.++ .+++.|+++|.+|+.+ +...+.|.+.|+++.|+.+|+++ +..++..|+++|.+|+.++++....++ +.|+
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv-~~g~ 210 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLC-SMGM 210 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHH-HTTH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHH-HcCC
Confidence 9842 6789999999999975 67788899999999999999976 499999999999999998776655555 5699
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 421 HGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 421 ~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
++.|+.|+.++++.+++.|..+|.++...
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999765
No 44
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.74 E-value=1e-18 Score=133.33 Aligned_cols=76 Identities=53% Similarity=1.083 Sum_probs=71.1
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHcCCC
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGIE 145 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~~~~ 145 (456)
.++|++|.||||+++|.|||+++|||+|||.||.+|+..+..+||.|++++...++.||..|++.|+.|..+++++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999999999999999876789999999999999999999999999999988753
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-18 Score=136.59 Aligned_cols=73 Identities=25% Similarity=0.482 Sum_probs=64.4
Q ss_pred CCCCccccccchhhccCcccCC-CCccccHHHHHHHHhcC-----CCCCCCCccc---ccCCCCcccHHHHHHHHHHHHH
Q 012813 71 SCPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAG-----NRTCPRTQQV---LSHTILTPNHLIREMISQWCRS 141 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~~-----~~~~P~~~~~---l~~~~l~~n~~lk~~i~~w~~~ 141 (456)
..+++|+||||+++|+|||++| |||+|||.+|++||..+ ..+||+++.+ ++..+|+||..|++.|+.|+..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3578999999999999999997 99999999999999853 3589995554 8889999999999999999876
Q ss_pred cC
Q 012813 142 QG 143 (456)
Q Consensus 142 ~~ 143 (456)
++
T Consensus 83 ~~ 84 (94)
T 2yu4_A 83 RH 84 (94)
T ss_dssp CC
T ss_pred hc
Confidence 64
No 46
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.72 E-value=2e-18 Score=164.89 Aligned_cols=78 Identities=31% Similarity=0.446 Sum_probs=72.4
Q ss_pred cCCCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHcCCC
Q 012813 68 ETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGIE 145 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~~~~ 145 (456)
...++|++|+||||+++|+|||++||||+|||.||++|+..+..+||+|+++++..+++||..|++.|+.|+.++++.
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 456799999999999999999999999999999999999875667999999999999999999999999999988764
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.62 E-value=6.5e-17 Score=116.02 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=49.9
Q ss_pred ccccccchhhccCcccC-CCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccH
Q 012813 75 EFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNH 129 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~ 129 (456)
.|.||||+++|+|||++ +|||+|||++|++|+.. +.+||+|+++++..+|+||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 69999999999999999 89999999999999987 46799999999999999985
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.59 E-value=7e-14 Score=143.71 Aligned_cols=277 Identities=15% Similarity=0.195 Sum_probs=217.3
Q ss_pred hhhHHHHHHHhcCC--chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 163 RDHFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 163 ~~~i~~Lv~~L~~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
.+.|+.|+..++++ .++++.|+..|+.++++ ++..++. ++++.|+..|++. .+|.++...++.+|.++.
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg~--~~l~~li~~L~~d----~~D~e~v~~~LetL~~l~ 90 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVGI--QAMEHLIHVLQTD----RSDSEIIGYALDTLYNII 90 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHHH--HTHHHHHHHHHSC----TTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhhh--hhHHHHHHHHhcc----cccHHHHHHHHHHHHHHh
Confidence 56899999999754 68999999999999873 5666665 7899999999864 458899999999998864
Q ss_pred cCcc------------------hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCc--cchhhc-ccCccHH
Q 012813 241 IHDN------------------NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIG-KSGALKP 299 (456)
Q Consensus 241 ~~~~------------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~--~~~~i~-~~G~i~~ 299 (456)
..++ +...+....+.++.|+.+|++.+..+|.+++.+|..|+.... ++..|. ..++|+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~ 170 (651)
T 3grl_A 91 SNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSR 170 (651)
T ss_dssp CCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHH
T ss_pred CCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHH
Confidence 3322 123455666789999999999999999999999999997653 466666 4699999
Q ss_pred HHhccccCChhHHHHHHHHHHHhccCchhhHHHHh-cCcHHHHHHHHcCC------chHHHHHHHHHHhhCC-HHHHHHH
Q 012813 300 LIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR-DGGVSVILKKIMDG------VHVDELLAILAMLSTN-HRAVEEI 371 (456)
Q Consensus 300 Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~-~g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~~-~~~~~~i 371 (456)
|+.+|++....++..|+.+|.+|+.+..+.++++. .|+++.|+.++... .+.+.|+.+|.+|..+ +.++..|
T Consensus 171 Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~F 250 (651)
T 3grl_A 171 LMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFF 250 (651)
T ss_dssp HHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998899999999999999999887777775 59999999999842 4688999999999995 6789999
Q ss_pred HhhCcHHHHHHHhhhcCC-----hhHHHH---HHHHHHHHhccCh-----hhHHHHHHhhccHHHHHHHhhcC--CHHHH
Q 012813 372 GDLGGVSCMLRIIRESTC-----DRNKEN---CIAILHTICLSDR-----TKWKAMREEESTHGTISKLAQDG--TARAK 436 (456)
Q Consensus 372 ~~~g~i~~Lv~ll~~~~~-----~~~~~~---A~~~L~~l~~~~~-----~~~~~~~~~~g~~~~L~~Ll~~~--~~~~k 436 (456)
.+.|+++.|..++..+.. +..-.+ ++.++..|+..+. ...+..+.+.|++..|.+++-.. ...++
T Consensus 251 rEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~ 330 (651)
T 3grl_A 251 KEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330 (651)
T ss_dssp HHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHH
T ss_pred HHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHH
Confidence 999999999999875321 112233 5556666665421 12355666779999999987654 56688
Q ss_pred HHHHHHHHHHhc
Q 012813 437 RKATGILERLKR 448 (456)
Q Consensus 437 ~~A~~~L~~l~~ 448 (456)
..|..++..+.+
T Consensus 331 ~~Al~tla~~ir 342 (651)
T 3grl_A 331 TETINTVSEVIR 342 (651)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 888888876543
No 49
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=114.75 Aligned_cols=78 Identities=26% Similarity=0.502 Sum_probs=69.1
Q ss_pred cCCCCCCccccccchhhccCcccCC-CCccccHHHHHHHHhc-CCCCCCCCcccc-cCCCCcccHHHHHHHHHHHHHcCC
Q 012813 68 ETVSCPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKA-GNRTCPRTQQVL-SHTILTPNHLIREMISQWCRSQGI 144 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~-~~~~~P~~~~~l-~~~~l~~n~~lk~~i~~w~~~~~~ 144 (456)
+..+++++|+||||.++|.|||++| |||+||+.||.+|+.. +..+||.||+++ ....+.+|..+++.++.|...+++
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 4456889999999999999999999 9999999999999974 346899999997 577899999999999999987754
Q ss_pred C
Q 012813 145 E 145 (456)
Q Consensus 145 ~ 145 (456)
.
T Consensus 86 ~ 86 (92)
T 3ztg_A 86 T 86 (92)
T ss_dssp C
T ss_pred H
Confidence 4
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=115.28 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=62.6
Q ss_pred CCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccC-CCCcccHHHHHHHHHHHH
Q 012813 72 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH-TILTPNHLIREMISQWCR 140 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~-~~l~~n~~lk~~i~~w~~ 140 (456)
+++++.||||.++|.|||++||||+||+.||.+|+..+..+||.||+++.. ..+.+|..++..++.|..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 345899999999999999999999999999999998656699999999987 789999999999998853
No 51
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.1e-13 Score=126.29 Aligned_cols=70 Identities=24% Similarity=0.382 Sum_probs=62.8
Q ss_pred CCCccccccchhhccCcccC-CCCccccHHHHHHHHhcC-CCCCCC--CcccccCCCCcccHHHHHHHHHHHHH
Q 012813 72 CPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAG-NRTCPR--TQQVLSHTILTPNHLIREMISQWCRS 141 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l-~~g~~~~r~~I~~~~~~~-~~~~P~--~~~~l~~~~l~~n~~lk~~i~~w~~~ 141 (456)
...+|+||||+++|+|||+. .|||+|||.||.+||..+ ..+||. |+++++..+|.||..|+++++.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 45679999999999999985 899999999999999863 457999 88999999999999999999999664
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.37 E-value=2.5e-13 Score=116.44 Aligned_cols=68 Identities=24% Similarity=0.459 Sum_probs=62.7
Q ss_pred CCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCC-CCcccHHHHHHHHHHH
Q 012813 72 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT-ILTPNHLIREMISQWC 139 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~-~l~~n~~lk~~i~~w~ 139 (456)
++++|.||||.++|.|||++||||+||+.||.+|+..+..+||.||+++... .+.+|..++..++.|.
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999999999999999997556899999999877 8999999999999885
No 53
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.34 E-value=7.5e-11 Score=121.34 Aligned_cols=248 Identities=10% Similarity=0.097 Sum_probs=194.7
Q ss_pred hhhhHHHHHHHhcCC-chhHHHHHHHHHHHhhcCch-hhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcc
Q 012813 162 DRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPS-FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 239 (456)
Q Consensus 162 ~~~~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~-~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L 239 (456)
+.+.+..|+..|.+. ...+..++..|..++...++ ++++|...+++|+.|+.+|. +....++.+++..|.+|
T Consensus 120 ~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~------d~rE~iRneallLL~~L 193 (651)
T 3grl_A 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA------DSREVIRNDGVLLLQAL 193 (651)
T ss_dssp STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG------CSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh------CchHHHHHHHHHHHHHH
Confidence 356788999999654 67888999999999987777 88888865799999999999 55788999999999999
Q ss_pred ccCcchhHHHhcCCCCHHHHHHHHhcCC----HHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccCC------
Q 012813 240 SIHDNNKKLVAETPMVIPLLMDALRSGT----IETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGH------ 308 (456)
Q Consensus 240 s~~~~~~~~i~~~~~~i~~Lv~lL~~~~----~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~------ 308 (456)
+.++.+.+.++.-.|+++.|+++++... ..+...|+.+|.+|...+ .|+..+.+.|.++.|..+|..+.
T Consensus 194 t~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~ 273 (651)
T 3grl_A 194 TRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWS 273 (651)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCC
T ss_pred hcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccH
Confidence 9999887777776679999999998643 377888999999999865 68899999999999999997542
Q ss_pred hhHHHH---HHHHHHHhccCc-------hhhHHHHhcCcHHHHHHHHcCC----chHHHHHHHHHHhhCC-HHHHHHHHh
Q 012813 309 QSAMKD---VASAIFNLCITH-------ENKARAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTN-HRAVEEIGD 373 (456)
Q Consensus 309 ~~~~~~---a~~aL~~L~~~~-------~~~~~~v~~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~~-~~~~~~i~~ 373 (456)
.+...+ ++.++.-|+... .|+..+.+.|+++.|++++..+ .++..|+.++..+..+ +.+++.+.+
T Consensus 274 ~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~ 353 (651)
T 3grl_A 274 AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFAS 353 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence 223444 677777776642 3677888999999999999864 5678899999999885 677888764
Q ss_pred hC---------cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHH
Q 012813 374 LG---------GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMR 415 (456)
Q Consensus 374 ~g---------~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~ 415 (456)
.. .+..|+.++.+......|-.|+.++.....++......++
T Consensus 354 ~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~ 404 (651)
T 3grl_A 354 VNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404 (651)
T ss_dssp CEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 32 2333445554444577899999999999888765433343
No 54
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=103.88 Aligned_cols=70 Identities=14% Similarity=0.344 Sum_probs=64.1
Q ss_pred CCCccccccchhhccCcccC-CCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHc
Q 012813 72 CPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQ 142 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~ 142 (456)
+++++.||||.+.|.|||++ +|||+||+.||.+|+.. ..+||.|+.++...++.+|..+++.++.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 45689999999999999988 89999999999999986 579999999999889999999999999997654
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.29 E-value=1.6e-10 Score=104.65 Aligned_cols=191 Identities=19% Similarity=0.194 Sum_probs=152.8
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 284 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~ 284 (456)
.+.++.|+..|. +.++.++..|+..|..+.. ...++.|+.+|.++++.+|..++.+|..+.
T Consensus 18 ~~~~~~L~~~L~------~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQ------DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-- 78 (211)
T ss_dssp GGGHHHHHHHTT------CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--
T ss_pred HhHHHHHHHHHc------CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--
Confidence 678999999998 5689999999999987542 247899999999999999999999998874
Q ss_pred CccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhh
Q 012813 285 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLS 362 (456)
Q Consensus 285 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~ 362 (456)
..++++.|+.+|.+.++.++..|+.+|..+.. .++++.|++++.++ .++..|+.+|..+.
T Consensus 79 --------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 79 --------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp --------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred --------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 34678999999999999999999999998853 34789999999876 57888999998874
Q ss_pred CCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHH
Q 012813 363 TNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGI 442 (456)
Q Consensus 363 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~ 442 (456)
. ...++.|+.++.+. ++.++..|+.+|..+.. ...++.|..+++++++.++..|...
T Consensus 141 ~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~a 197 (211)
T 3ltm_A 141 D----------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNY 197 (211)
T ss_dssp C----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2 34788999999754 58999999999998843 2456788889999999999999999
Q ss_pred HHHHhcchhccCC
Q 012813 443 LERLKRTVNLTHT 455 (456)
Q Consensus 443 L~~l~~~~~~~~~ 455 (456)
|.++......++.
T Consensus 198 L~~~~~~~~~~~~ 210 (211)
T 3ltm_A 198 LETHKSFNHHHHH 210 (211)
T ss_dssp HHC----------
T ss_pred HHhcCCCCCCCCC
Confidence 9999887666543
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.24 E-value=3.4e-12 Score=103.32 Aligned_cols=67 Identities=15% Similarity=0.358 Sum_probs=60.3
Q ss_pred CCCccccccchhhccCcccC-CCCccccHHHHHHHHhcCCCCCCCCcccccCC----CCcccHHHHHHHHHHH
Q 012813 72 CPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT----ILTPNHLIREMISQWC 139 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~----~l~~n~~lk~~i~~w~ 139 (456)
+++++.||||.++|.|||++ +|||+||+.||.+|+.. ..+||.|+.++... .+.+|..++..++.|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 45689999999999999997 99999999999999987 58999999998765 7889999999998873
No 57
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.22 E-value=4.2e-12 Score=104.41 Aligned_cols=69 Identities=19% Similarity=0.456 Sum_probs=62.4
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHH
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQW 138 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w 138 (456)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.||.++...++.++..+++.|..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 457889999999999999999999999999999999987455999999999988899999998888764
No 58
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.21 E-value=5.6e-12 Score=100.40 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=60.4
Q ss_pred CCCccccccchhhccCccc-CCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHH
Q 012813 72 CPEEFKCPLSKELMRDPVI-LASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCR 140 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~-l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~ 140 (456)
+.+++.||||.+.|.+||+ ++|||+||+.||.+|+.....+||.||.++...++.+|..+...++....
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 3448999999999999999 99999999999999999744799999999999999999888777766544
No 59
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.21 E-value=4.7e-13 Score=101.86 Aligned_cols=64 Identities=27% Similarity=0.449 Sum_probs=55.9
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcC------CCCCCCCcccccCCCCcccHHHHH
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG------NRTCPRTQQVLSHTILTPNHLIRE 133 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~------~~~~P~~~~~l~~~~l~~n~~lk~ 133 (456)
..+.+++.||||.+.+.+|+++||||+|++.||.+|+... ..+||.||+++...++.+|..|++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 3467899999999999999999999999999999999752 568999999999888888876543
No 60
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=93.77 Aligned_cols=65 Identities=15% Similarity=0.309 Sum_probs=55.6
Q ss_pred CCCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHH
Q 012813 69 TVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMI 135 (456)
Q Consensus 69 ~~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i 135 (456)
..+..+++.||||.+.|.+||+++|||+|++.||.+|+.. ..+||+|++++. ..+.+|..+...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~ 73 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKL 73 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHH
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHH
Confidence 3446678999999999999999999999999999999986 679999999987 6777886655444
No 61
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.4e-11 Score=90.10 Aligned_cols=56 Identities=14% Similarity=0.349 Sum_probs=49.6
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCC
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTIL 125 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l 125 (456)
..+++++.||||.+.+++|++++|||+|++.||.+|+..+..+||.+|+++...++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 44678999999999999999999999999999999997556789999999876543
No 62
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=92.68 Aligned_cols=61 Identities=26% Similarity=0.476 Sum_probs=51.3
Q ss_pred cCCCCCCccccccchhhccCcccCC-CCccccHHHHHHHHhcC-CCCCCCCccccc-CCCCccc
Q 012813 68 ETVSCPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAG-NRTCPRTQQVLS-HTILTPN 128 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~-~~~l~~n 128 (456)
+...+++++.||||.++|.|||++| |||+|++.||.+|+... ..+||.||+++. .+.+.+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 4456888999999999999999999 99999999999999853 368999999854 4555555
No 63
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=2.7e-12 Score=98.98 Aligned_cols=64 Identities=25% Similarity=0.443 Sum_probs=56.1
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcC-----CCCCCCCcccccCCCCcccHHHHH
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG-----NRTCPRTQQVLSHTILTPNHLIRE 133 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~-----~~~~P~~~~~l~~~~l~~n~~lk~ 133 (456)
..+.+++.||||.+.+.+|+++||||+|++.||.+|+... ...||.|++++...++.+|..+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 4477899999999999999999999999999999999862 568999999999888888865543
No 64
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.2e-11 Score=90.77 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=53.1
Q ss_pred cCCCCCCccccccchhhccCcccC-CCCccccHHHHHHHHhcCCCCCCCCcccccCCCCccc
Q 012813 68 ETVSCPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 128 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~~~m~dPv~l-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 128 (456)
+..++.+++.||||.+.|.||+++ +|||+|++.||.+|+.. ..+||.||+++...++.+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 345577899999999999999987 99999999999999987 6899999999988777665
No 65
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=6.8e-12 Score=103.03 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=61.2
Q ss_pred CCccccccchhhccCcccC-CCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHHHHHc
Q 012813 73 PEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQ 142 (456)
Q Consensus 73 p~~f~Cpi~~~~m~dPv~l-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~~~~ 142 (456)
.+++.||||.++|.+||++ +|||+||+.||.+|+. ..||.|+.++...++.+|..++..++.|....
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 4489999999999999999 9999999999999987 67999999998889999999999999886543
No 66
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.18 E-value=3.8e-12 Score=104.28 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=60.9
Q ss_pred CCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccC-------CCCcccHHHHHHHHHHH
Q 012813 71 SCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH-------TILTPNHLIREMISQWC 139 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~-------~~l~~n~~lk~~i~~w~ 139 (456)
...++|.||||.++|.+||+++|||+||+.||.+|+..+..+||+||+++.. ..+..|..+...++.|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3455899999999999999999999999999999998767789999999863 56778899999998885
No 67
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.17 E-value=8.3e-12 Score=109.09 Aligned_cols=69 Identities=22% Similarity=0.442 Sum_probs=61.4
Q ss_pred CCCccccccchhhccCcccC-CCCccccHHHHHHHHhcCCCCCCCCccccc-CCCCcccHHHHHHHHHHHH
Q 012813 72 CPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLS-HTILTPNHLIREMISQWCR 140 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~-~~~l~~n~~lk~~i~~w~~ 140 (456)
+.+++.||||.+.|.+||++ +|||+||+.||.+|+..+..+||.|+.++. ...+.+|..++..|..|..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 45678999999999999987 999999999999999976788999999985 4679999999999998844
No 68
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.17 E-value=1.1e-09 Score=103.77 Aligned_cols=224 Identities=11% Similarity=0.023 Sum_probs=148.0
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
...++.|++.|.+ +...+..|+..|..+.. .++++.|+.+|. +.++.++..|+.+|..+..
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~------d~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCS------DKNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHT------CSSHHHHHHHHHHHHHSCC
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHc------CCCHHHHHHHHHHHHHhcc
Confidence 4567888998864 46778888888877652 357888888888 5678899999999988754
Q ss_pred CcchhHHHhcCCCCHHHHH-HHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHH
Q 012813 242 HDNNKKLVAETPMVIPLLM-DALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 320 (456)
Q Consensus 242 ~~~~~~~i~~~~~~i~~Lv-~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~ 320 (456)
...... ..++.|. .++.++++.+|..++++|.++...... ....+++.|+.+|.++++.++..|+.+|.
T Consensus 84 ~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 84 CKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp CTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 322111 1233333 245667888999999999888642211 12356788888888888888888888888
Q ss_pred HhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHH
Q 012813 321 NLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIA 398 (456)
Q Consensus 321 ~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~ 398 (456)
++.. .++++.|++++.++ .++..|+.+|..+.... ..+++.|+.++.+. ++.++..|+.
T Consensus 154 ~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~-~~~vR~~A~~ 214 (280)
T 1oyz_A 154 VIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDK-NEEVRIEAII 214 (280)
T ss_dssp TC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred hcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 7743 24788888888865 56777888887774321 12456677777654 3777777777
Q ss_pred HHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 399 ILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 399 ~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
+|..+.. ...++.|..++++++ ++..|...|..+.
T Consensus 215 aL~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 215 GLSYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp HHHHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred HHHHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 7777651 134455555554433 5555555555543
No 69
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.17 E-value=4.6e-11 Score=101.04 Aligned_cols=62 Identities=19% Similarity=0.445 Sum_probs=50.6
Q ss_pred CccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHHH
Q 012813 74 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQW 138 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~w 138 (456)
+++.||||.+.|.|||++||||+||+.||.+|+.. ..+||+||.++.... ++..+...+..+
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~--~~~~~~~~i~~~ 113 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT--YSLVLDNCINKM 113 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEE--ECHHHHHHHHHH
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCC--CccchhHHHHHH
Confidence 47899999999999999999999999999999986 678999999986432 344444555444
No 70
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.16 E-value=1.6e-09 Score=97.32 Aligned_cols=184 Identities=19% Similarity=0.200 Sum_probs=152.3
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 284 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~ 284 (456)
.+..+.++.+|. +.++.++..|+.+|..+.. ...++.|+.+|.++++.+|..++.+|..+.
T Consensus 13 ~~~~~~~i~~L~------~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQ------DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-- 73 (201)
T ss_dssp HHHHHHHHHHTT------CSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--
T ss_pred CcchHHHHHHhc------CCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--
Confidence 467888999998 6689999999999987542 247899999999999999999999998764
Q ss_pred CccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhh
Q 012813 285 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLS 362 (456)
Q Consensus 285 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~ 362 (456)
..++++.|+.+|.+.++.++..|+++|..+.. ..+++.|++++.++ .++..|+.+|..+.
T Consensus 74 --------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 74 --------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp --------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 34678999999999999999999999998753 24789999999876 57888898888874
Q ss_pred CCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHH
Q 012813 363 TNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGI 442 (456)
Q Consensus 363 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~ 442 (456)
. .+.++.|+.++.+. ++.++..|+.+|..+.. ...++.|..+++++++.++..|...
T Consensus 136 ~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~a 192 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNY 192 (201)
T ss_dssp C----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2 45788999999865 58999999999998832 2456788888899999999999999
Q ss_pred HHHHhc
Q 012813 443 LERLKR 448 (456)
Q Consensus 443 L~~l~~ 448 (456)
|..+..
T Consensus 193 L~~l~~ 198 (201)
T 3ltj_A 193 LETHKS 198 (201)
T ss_dssp HHHCC-
T ss_pred HHHHHh
Confidence 988754
No 71
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=4e-12 Score=98.05 Aligned_cols=64 Identities=27% Similarity=0.541 Sum_probs=56.1
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhc-----CCCCCCCCcccccCCCCcccHHHHH
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA-----GNRTCPRTQQVLSHTILTPNHLIRE 133 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~-----~~~~~P~~~~~l~~~~l~~n~~lk~ 133 (456)
..+.+++.||||.+.+.+|+++||||+||+.||.+|+.. +...||+|++++...++.+|..+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 457789999999999999999999999999999999975 3578999999999888888865543
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.14 E-value=1.8e-09 Score=97.78 Aligned_cols=187 Identities=16% Similarity=0.134 Sum_probs=148.2
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
...++.|++.|.+ +...+..|+..|..+.. .++++.|+.+|. +.++.++..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~------~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALK------DEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTT------CSCHHHHHHHHHHHHHHCC
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHc------CCCHHHHHHHHHHHHhhCC
Confidence 5678899999964 46778888888876543 468899999998 5689999999999987642
Q ss_pred CcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHH
Q 012813 242 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 321 (456)
Q Consensus 242 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~ 321 (456)
...++.|+.+|+++++.+|..++.+|..+. ..++++.|+.+|.++++.++..|+.+|..
T Consensus 80 -----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 80 -----------ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGE 138 (211)
T ss_dssp -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 247899999999999999999999998874 24678999999999999999999999999
Q ss_pred hccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHH
Q 012813 322 LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 399 (456)
Q Consensus 322 L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~ 399 (456)
+.. ..+++.|++++.++ .++..|+.+|..+.. ..+++.|..++... ++.++..|..+
T Consensus 139 ~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~a 197 (211)
T 3ltm_A 139 IGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNY 197 (211)
T ss_dssp HCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred cCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 843 24789999999876 578889988888743 33577888888865 49999999999
Q ss_pred HHHHhccChh
Q 012813 400 LHTICLSDRT 409 (456)
Q Consensus 400 L~~l~~~~~~ 409 (456)
|..+......
T Consensus 198 L~~~~~~~~~ 207 (211)
T 3ltm_A 198 LETHKSFNHH 207 (211)
T ss_dssp HHC-------
T ss_pred HHhcCCCCCC
Confidence 9998876653
No 73
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=1.8e-11 Score=99.70 Aligned_cols=66 Identities=17% Similarity=0.413 Sum_probs=57.1
Q ss_pred CccccccchhhccCcccCCCCccccHHHHHHHHhcC--CCCCCCCcccccCCCCcccHHHHHHHHHHH
Q 012813 74 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG--NRTCPRTQQVLSHTILTPNHLIREMISQWC 139 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~--~~~~P~~~~~l~~~~l~~n~~lk~~i~~w~ 139 (456)
+++.||||.+.+.+|+++||||+||+.||.+|+... ..+||.|+.++...++.+|..+...++.+.
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 478899999999999999999999999999999853 258999999999888888876666666654
No 74
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=9.7e-11 Score=85.32 Aligned_cols=55 Identities=20% Similarity=0.437 Sum_probs=49.0
Q ss_pred Cccccccchh-hccCc----ccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCccc
Q 012813 74 EEFKCPLSKE-LMRDP----VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 128 (456)
Q Consensus 74 ~~f~Cpi~~~-~m~dP----v~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 128 (456)
+++.||||.+ .+.+| ++++|||+|++.+|.+|+..+...||.||.+++..++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 4689999999999999988766789999999988777665
No 75
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=9.4e-11 Score=87.49 Aligned_cols=56 Identities=21% Similarity=0.456 Sum_probs=49.1
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhc--CCCCCCCCcccccCCCC
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA--GNRTCPRTQQVLSHTIL 125 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~--~~~~~P~~~~~l~~~~l 125 (456)
..+.+++.||||.+.+.+|++++|||+|++.||.+|+.. +...||+||+++...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 457789999999999999999999999999999999973 35689999999876543
No 76
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.06 E-value=5.9e-09 Score=93.51 Aligned_cols=183 Identities=16% Similarity=0.137 Sum_probs=148.3
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
.+..+.+++.|.+ +..++..|+..|..+.. .++++.|+.+|. +.++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~------~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALK------DEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTT------CSSHHHHHHHHHHHHHHCC
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHc------CCCHHHHHHHHHHHHhhCC
Confidence 5677899999965 47788889888876543 367889999997 5688999999999987632
Q ss_pred CcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHH
Q 012813 242 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 321 (456)
Q Consensus 242 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~ 321 (456)
...++.|+.+|.++++.+|..++.+|..+. ...+++.|+.+|.+.++.++..|+++|..
T Consensus 75 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 75 -----------ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGE 133 (201)
T ss_dssp -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 247899999999999999999999998874 24578999999999999999999999998
Q ss_pred hccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHH
Q 012813 322 LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 399 (456)
Q Consensus 322 L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~ 399 (456)
+.. ...++.|+.++.++ .++..|+.+|..+.. ..+++.|..++... ++.++..|..+
T Consensus 134 ~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~a 192 (201)
T 3ltj_A 134 IGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNY 192 (201)
T ss_dssp HTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred hCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 843 35789999999876 578889998888732 23577888888765 48999999999
Q ss_pred HHHHhc
Q 012813 400 LHTICL 405 (456)
Q Consensus 400 L~~l~~ 405 (456)
|..+..
T Consensus 193 L~~l~~ 198 (201)
T 3ltj_A 193 LETHKS 198 (201)
T ss_dssp HHHCC-
T ss_pred HHHHHh
Confidence 987643
No 77
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.05 E-value=7.6e-11 Score=103.49 Aligned_cols=68 Identities=19% Similarity=0.467 Sum_probs=61.6
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCcccHHHHHHHHH
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQ 137 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~ 137 (456)
..++++|.||||.++|.+||.++|||+|++.||.+|+..+..+||.+|.+++..++.++..+++.|..
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 35888999999999999999999999999999999998645699999999998889999988888765
No 78
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.03 E-value=3.7e-11 Score=101.70 Aligned_cols=66 Identities=14% Similarity=0.317 Sum_probs=55.9
Q ss_pred CCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCccccc---------CCCCcccHHHHHHHH
Q 012813 71 SCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS---------HTILTPNHLIREMIS 136 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~---------~~~l~~n~~lk~~i~ 136 (456)
.++++|.||||.++|.+||.++|||+||+.||.+|+..+..+||.||.++. ...+.++..+++.|.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 467899999999999999999999999999999999875568999998753 234568877777765
No 79
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=1.3e-10 Score=95.19 Aligned_cols=66 Identities=23% Similarity=0.353 Sum_probs=55.1
Q ss_pred CCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCc-ccHHHHHHHHH
Q 012813 72 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT-PNHLIREMISQ 137 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~-~n~~lk~~i~~ 137 (456)
++++|.||||.++|.|||+++|||+|++.||.+|+.....+||.|+.++...++. ++..+.+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4557899999999999999999999999999999987567899999999877665 44555555543
No 80
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.00 E-value=6.1e-09 Score=114.24 Aligned_cols=271 Identities=14% Similarity=0.093 Sum_probs=189.2
Q ss_pred hhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhh--hh-ccCCchhhhhhccccccccCCCChhhHHHHHHHHHcc
Q 012813 164 DHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRAL--FG-ESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 239 (456)
Q Consensus 164 ~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~--i~-~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L 239 (456)
+.++.|++.+.+ +...++.|+..|..++...+..-.. +. ...+.++.|+..++ +.+++++..|+.+|.++
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~------~~~~~vR~~A~~aL~~~ 201 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK------HSSPKIRSHAVACVNQF 201 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTT------CSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHH
Confidence 457788888865 4567888999999988753332110 00 00246777777777 55789999999999987
Q ss_pred ccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccc--hhhcccCccHHHHhccccCChhHHHHHHH
Q 012813 240 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK--EVIGKSGALKPLIDLLDEGHQSAMKDVAS 317 (456)
Q Consensus 240 s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~--~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~ 317 (456)
........ ...-..+++.|..++.+++.++|..++.+|..++...... ..+ .++++.++.++.+.++.++..|+.
T Consensus 202 ~~~~~~~~-~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e 278 (852)
T 4fdd_A 202 IISRTQAL-MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACE 278 (852)
T ss_dssp TTTTCHHH-HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HhcccHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHH
Confidence 75433211 1111136788888888999999999999999998643221 111 257888888988889999999999
Q ss_pred HHHHhccCchhhHHHHh--cCcHHHHHHHH-----------cC-----------C--chHHHHHHHHHHhhCCHHHHHHH
Q 012813 318 AIFNLCITHENKARAVR--DGGVSVILKKI-----------MD-----------G--VHVDELLAILAMLSTNHRAVEEI 371 (456)
Q Consensus 318 aL~~L~~~~~~~~~~v~--~g~v~~Lv~lL-----------~~-----------~--~~~~~a~~~L~~L~~~~~~~~~i 371 (456)
++..++.....+..+.. ...+|.++..+ .+ . .++..|..+|..++.... ..+
T Consensus 279 ~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~ 356 (852)
T 4fdd_A 279 FWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DEL 356 (852)
T ss_dssp HHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGG
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHH
Confidence 99999876543332211 14577777777 22 1 346678888888875321 111
Q ss_pred HhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 372 GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 372 ~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
.. ..++.+...+.+. +...|+.|+.+|.+++..........+ ..+++.|..++.+.++.++..|+++|.+++.+
T Consensus 357 ~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 357 LP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 11 2466677777755 589999999999999987765433333 46788999999999999999999999999875
No 81
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.99 E-value=2.3e-09 Score=114.56 Aligned_cols=191 Identities=14% Similarity=0.153 Sum_probs=149.5
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHH-HhccccCChhHHHHHHHHHHHhccC--chhhHH
Q 012813 255 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPL-IDLLDEGHQSAMKDVASAIFNLCIT--HENKAR 331 (456)
Q Consensus 255 ~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~L-v~lL~~~~~~~~~~a~~aL~~L~~~--~~~~~~ 331 (456)
++| +++.|+++++..|..|+++|.+|+.+..++..+...|+|..+ ..+|.+.+.+++..|+++|+||+.. .+.+..
T Consensus 36 i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 36 ILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp THH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 556 778899999999999999999999877888888888887765 5678888999999999999999975 468888
Q ss_pred HHhcCcHHHHHHHHcCC-----------------------chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhc
Q 012813 332 AVRDGGVSVILKKIMDG-----------------------VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES 387 (456)
Q Consensus 332 ~v~~g~v~~Lv~lL~~~-----------------------~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~ 387 (456)
+++.|++++|..++... .+.+.++.+|++||.. .+....+.+.|+++.|+..+...
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 99999999999988420 2345688999999974 66777888889999999887643
Q ss_pred --CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHH--hhcCCHHHHHHHHHHHHHHh
Q 012813 388 --TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL--AQDGTARAKRKATGILERLK 447 (456)
Q Consensus 388 --~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~L--l~~~~~~~k~~A~~~L~~l~ 447 (456)
.+..++..|+.+|..++..++...+.+.. .+....+..+ +..++...+..++++|.|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 23678999999999999998876555554 3443333333 23344456778899999874
No 82
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.99 E-value=1.3e-08 Score=96.37 Aligned_cols=197 Identities=9% Similarity=0.023 Sum_probs=149.5
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 284 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~ 284 (456)
.+.++.|+..|. +.++.++..|+.+|.++.. +.+++.|+.+|+++++.+|..++.+|..+...
T Consensus 22 ~~~i~~L~~~L~------~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~ 84 (280)
T 1oyz_A 22 KLNDDELFRLLD------DHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC 84 (280)
T ss_dssp TSCHHHHHHHTT------CSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred HhhHHHHHHHHH------cCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 578999999998 5688999999999988751 24788899999999999999999999888643
Q ss_pred CccchhhcccCccHHHHh-ccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHh
Q 012813 285 DSNKEVIGKSGALKPLID-LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAML 361 (456)
Q Consensus 285 ~~~~~~i~~~G~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L 361 (456)
..... .+++.|.+ ++.+.++.++..++++|.++...... ....+++.|+.++.++ .++..|+.+|..+
T Consensus 85 ~~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 85 KKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp TTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred cccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 22111 13344442 44667899999999999998643211 1124688999999876 5677788888776
Q ss_pred hCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHH
Q 012813 362 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATG 441 (456)
Q Consensus 362 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~ 441 (456)
.. .++++.|+.++.+. ++.++..|+.+|..+....+ ..++.|..++++.++.++..|.+
T Consensus 156 ~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~~----------~~~~~L~~~l~d~~~~vR~~A~~ 214 (280)
T 1oyz_A 156 ND----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDNS----------DIRDCFVEMLQDKNEEVRIEAII 214 (280)
T ss_dssp -------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCH----------HHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCcH----------HHHHHHHHHhcCCCHHHHHHHHH
Confidence 43 35899999999865 48899999999998854332 45578888999999999999999
Q ss_pred HHHHHhc
Q 012813 442 ILERLKR 448 (456)
Q Consensus 442 ~L~~l~~ 448 (456)
.|..+..
T Consensus 215 aL~~~~~ 221 (280)
T 1oyz_A 215 GLSYRKD 221 (280)
T ss_dssp HHHHTTC
T ss_pred HHHHhCC
Confidence 9988763
No 83
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.9e-10 Score=81.47 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=41.7
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhc--CCCCCCCC
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA--GNRTCPRT 116 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~--~~~~~P~~ 116 (456)
..+.+++.|||+.+.+.+||+++|||+|++.+|.+|+.. +..+||.+
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 447789999999999999999999999999999999984 35689975
No 84
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.97 E-value=2.6e-10 Score=84.56 Aligned_cols=57 Identities=21% Similarity=0.398 Sum_probs=50.9
Q ss_pred CCCCccccccchhhccCc-------ccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCccc
Q 012813 71 SCPEEFKCPLSKELMRDP-------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 128 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m~dP-------v~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 128 (456)
...+++.||||.+.+.+| ++++|||+|++.||.+|+.. ..+||+||+++...++.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 345689999999999999 89999999999999999987 5799999999988877765
No 85
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.93 E-value=6.1e-09 Score=114.24 Aligned_cols=270 Identities=10% Similarity=0.042 Sum_probs=182.3
Q ss_pred hHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 165 HFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 165 ~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
.++.+++.+++ +..++..|++.|..+............ .+.++.|+.++. +.+++++..|+.+|..++...
T Consensus 175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~--~~~l~~l~~~~~------d~~~~vr~~a~~~L~~l~~~~ 246 (852)
T 4fdd_A 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALAG------DEEPEVRKNVCRALVMLLEVR 246 (852)
T ss_dssp HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH--HHHHHHHHHHHT------CCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHhC
Confidence 45555665653 467788999999877764332111111 256777777776 568899999999999987654
Q ss_pred chh-HHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcc--cCccHHHHhccc-----------c---
Q 012813 244 NNK-KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLD-----------E--- 306 (456)
Q Consensus 244 ~~~-~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~--~G~i~~Lv~lL~-----------~--- 306 (456)
... ..... ++++.++.++++.+..++..|+.++..++.....+..+.. ...++.|+..+. +
T Consensus 247 ~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~e 324 (852)
T 4fdd_A 247 MDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEG 324 (852)
T ss_dssp HHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC----
T ss_pred HHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccc
Confidence 321 11111 3678888888888999999999999999865433332221 256777777762 2
Q ss_pred --------CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCc
Q 012813 307 --------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGG 376 (456)
Q Consensus 307 --------~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~ 376 (456)
.+-.++..|+.+|..|+..... .++. ..++.+.+.+.++ ..++.|+.+|.+++......-.-.-.+.
T Consensus 325 d~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~ 401 (852)
T 4fdd_A 325 GSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL 401 (852)
T ss_dssp --------CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 1124578889999988764321 2222 3677777777765 6788899999999986432111112356
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhh-HHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 377 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTK-WKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 377 i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~-~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
++.|+..+.+. ++.++..|+++|.+++...... ....+ ...++.|...+.+.+++++..|.++|.++++..
T Consensus 402 l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 402 IPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 88888888755 5999999999999998753221 01122 366778888888889999999999999997643
No 86
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.7e-10 Score=85.66 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=46.6
Q ss_pred CCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCC
Q 012813 71 SCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 123 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 123 (456)
...+++.||||.+.+.+||++||||+|++.||.+|+.. ..+||+||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 35668999999999999999999999999999999987 57999999987653
No 87
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.1e-09 Score=84.88 Aligned_cols=56 Identities=23% Similarity=0.474 Sum_probs=48.7
Q ss_pred cCCCCCCccccccchhhccC----cccCCCCccccHHHHHHHHhcC--CCCCCCCcccccCC
Q 012813 68 ETVSCPEEFKCPLSKELMRD----PVILASGQTFDRPYIQRWLKAG--NRTCPRTQQVLSHT 123 (456)
Q Consensus 68 ~~~~~p~~f~Cpi~~~~m~d----Pv~l~~g~~~~r~~I~~~~~~~--~~~~P~~~~~l~~~ 123 (456)
+...+.+++.||||.+.+.+ |++++|||+|++.||.+|+... ..+||+||+++...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34457788999999999999 9999999999999999999863 46899999987654
No 88
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.5e-09 Score=76.82 Aligned_cols=47 Identities=28% Similarity=0.643 Sum_probs=41.4
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhc--CCCCCCCC
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA--GNRTCPRT 116 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~--~~~~~P~~ 116 (456)
..+.+++.|||+.+.+.+|++++|||+|++.+|.+|+.. +..+||++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456778999999999999999999999999999999764 46789975
No 89
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.87 E-value=3.2e-09 Score=113.46 Aligned_cols=191 Identities=15% Similarity=0.168 Sum_probs=145.7
Q ss_pred chhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-
Q 012813 207 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD- 285 (456)
Q Consensus 207 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~- 285 (456)
.|.+++..|+ +.+++.+..|+.+|.+|+.++..+..+...+++.+.|..+|.+.+.++|..|+++|.||+...
T Consensus 35 ~i~Pll~~L~------S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 35 KILPVLKDLK------SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp TTHHHHHHHS------SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHcC------CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 4555677787 568899999999999999888888888887644455567788899999999999999999754
Q ss_pred -ccchhhcccCccHHHHhccccC--------------C-------hhHHHHHHHHHHHhccCc-hhhHHHHhcCcHHHHH
Q 012813 286 -SNKEVIGKSGALKPLIDLLDEG--------------H-------QSAMKDVASAIFNLCITH-ENKARAVRDGGVSVIL 342 (456)
Q Consensus 286 -~~~~~i~~~G~i~~Lv~lL~~~--------------~-------~~~~~~a~~aL~~L~~~~-~~~~~~v~~g~v~~Lv 342 (456)
+.+..+.+.|+++.|..+|.+. . ..+...++.+|++||... +....+...++++.|+
T Consensus 109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHH
T ss_pred chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHH
Confidence 5677888999999999988531 0 124457889999999754 4555677789999999
Q ss_pred HHHcCC-----chHHHHHHHHHHhhCC-HHHHHHHHhhCcH---HHHHHHhhhcCChhHHHHHHHHHHHHhc
Q 012813 343 KKIMDG-----VHVDELLAILAMLSTN-HRAVEEIGDLGGV---SCMLRIIRESTCDRNKENCIAILHTICL 405 (456)
Q Consensus 343 ~lL~~~-----~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i---~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 405 (456)
.+|.+. .+...|+.+|..++.+ ++..+.+.+.|.. ..++.+.. +. ...+..++++|+|+..
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~-~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GT-DPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SS-CTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CC-cHHHHHHHHHHHhHhh
Confidence 998532 5788899999999996 5667777776642 33333333 33 4567789999999853
No 90
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.86 E-value=6e-10 Score=80.67 Aligned_cols=54 Identities=22% Similarity=0.431 Sum_probs=48.4
Q ss_pred CccccccchhhccCc-------ccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCccc
Q 012813 74 EEFKCPLSKELMRDP-------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 128 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dP-------v~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 128 (456)
+++.||||.+.+.+| ++++|||+|++.+|.+|+.. ..+||.+|+++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 478999999999998 78999999999999999987 6799999999988776654
No 91
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=3.7e-09 Score=79.49 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=46.7
Q ss_pred CCCCccccccchhhc--cCcccCC--CCccccHHHHHHHHhcCCCCCCCCcccccCCCC
Q 012813 71 SCPEEFKCPLSKELM--RDPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTIL 125 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m--~dPv~l~--~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l 125 (456)
...+++.||||.+.+ .|+++.| |||+||+.||.+++..+...||.||++++...+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 356789999999999 5677777 999999999999997667789999999876543
No 92
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.8e-09 Score=79.36 Aligned_cols=52 Identities=21% Similarity=0.433 Sum_probs=46.6
Q ss_pred CCCCCccccccchhhccCc-------ccCCCCccccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 70 VSCPEEFKCPLSKELMRDP-------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dP-------v~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
...++++.||||++.+.+| ++++|||+|++.||.+|+.. ..+||+||++++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4467789999999999998 88999999999999999987 6799999998754
No 93
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.77 E-value=3.6e-09 Score=79.86 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=49.3
Q ss_pred CCCCCccccccchhhccCcc---cCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCccc
Q 012813 70 VSCPEEFKCPLSKELMRDPV---ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 128 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv---~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 128 (456)
....+++.||||++.|.+|. +++|||.|++.||.+|+.. ..+||+||.++....+.++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 34566899999999999874 4699999999999999986 5799999999988776654
No 94
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.76 E-value=6.9e-08 Score=97.40 Aligned_cols=273 Identities=12% Similarity=0.128 Sum_probs=180.8
Q ss_pred hhHHHHHHHhcC---CchhHHHHHHHHHHHhhcC-chhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcc
Q 012813 164 DHFLSLLKKMSA---TLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 239 (456)
Q Consensus 164 ~~i~~Lv~~L~~---~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~L 239 (456)
+.++.|++.+.+ +...+..|+..|..++... ...-..... ..++.++..+... ..++.++..|+.++.++
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~----~~~~~vr~~a~~~l~~~ 201 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKE----EPSNNVKLAATNALLNS 201 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHSTT----CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhCCC----CCCHHHHHHHHHHHHHH
Confidence 467788888854 4567888999999998753 221111222 4667777777731 11688999999999886
Q ss_pred ccCcc-hh-HHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCcc--chhhcccCccHHHHhccccCChhHHHHH
Q 012813 240 SIHDN-NK-KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQSAMKDV 315 (456)
Q Consensus 240 s~~~~-~~-~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~--~~~i~~~G~i~~Lv~lL~~~~~~~~~~a 315 (456)
...-. +- ..... ..+++.|...+.+++.++|..++.+|..++..... ...+. .++++.++..+.+.++.++..|
T Consensus 202 ~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a 279 (462)
T 1ibr_B 202 LEFTKANFDKESER-HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQG 279 (462)
T ss_dssp TTTTHHHHTSHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHhhhhhHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHH
Confidence 43211 10 00011 11356666667777899999999999998864321 12221 1677888888888889999999
Q ss_pred HHHHHHhccCchh------------------hHHHHh---cCcHHHHHHHHcCC---------chHHHHHHHHHHhhCCH
Q 012813 316 ASAIFNLCITHEN------------------KARAVR---DGGVSVILKKIMDG---------VHVDELLAILAMLSTNH 365 (456)
Q Consensus 316 ~~aL~~L~~~~~~------------------~~~~v~---~g~v~~Lv~lL~~~---------~~~~~a~~~L~~L~~~~ 365 (456)
+..+..++..... ...+++ ...+|.+++.|.+. ..+..|+.+|..++..-
T Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~ 359 (462)
T 1ibr_B 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc
Confidence 9999988764310 111111 23567777777421 56778888888887631
Q ss_pred HHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccCh-hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012813 366 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-TKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 444 (456)
Q Consensus 366 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~ 444 (456)
. +.+. ...++.+...+.+. +...++.|+.+|..++.+.. ...+..+ ..+++.|..++.+.++.+|..|+++|.
T Consensus 360 ~--~~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 433 (462)
T 1ibr_B 360 E--DDIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVG 433 (462)
T ss_dssp T--TTHH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred c--HHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1 1222 13456666777654 58899999999999997543 2112222 468899999999999999999999999
Q ss_pred HHhcch
Q 012813 445 RLKRTV 450 (456)
Q Consensus 445 ~l~~~~ 450 (456)
+++..-
T Consensus 434 ~~~~~~ 439 (462)
T 1ibr_B 434 RICELL 439 (462)
T ss_dssp HHHHHG
T ss_pred HHHHhc
Confidence 998754
No 95
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.70 E-value=2.1e-07 Score=97.82 Aligned_cols=255 Identities=13% Similarity=0.171 Sum_probs=175.4
Q ss_pred hHHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 165 HFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 165 ~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
.+..+++.++++ ...++-+...+..++..+++... -++..+..-|+ +.++.++..|+.+|.++...
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~------l~~n~l~kdL~------~~n~~ir~~AL~~L~~i~~~- 116 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI------MAVNSFVKDCE------DPNPLIRALAVRTMGCIRVD- 116 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH------TTHHHHGGGSS------SSSHHHHHHHHHHHHTCCSG-
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH------HHHHHHHHHcC------CCCHHHHHHHHHHHHcCChH-
Confidence 455677777543 56666666677777765444321 23456666676 56899999999999988622
Q ss_pred chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhc
Q 012813 244 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 323 (456)
Q Consensus 244 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 323 (456)
+ +.. .++|.+..+|.+.++.+|+.|+.+|.++..... ..+.+.++++.|..+|.+.++.++..|+.+|..++
T Consensus 117 ~----~~~--~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 117 K----ITE--YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp G----GHH--HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred H----HHH--HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 1 222 256778899999999999999999999987432 23333578999999999999999999999999998
Q ss_pred cCchhhH-HHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH-HHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHH
Q 012813 324 ITHENKA-RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH-RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 399 (456)
Q Consensus 324 ~~~~~~~-~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~ 399 (456)
....... .-...+.++.|+..+.+. -.+...+.+|..++..+ +... ..++.+..++++. ++.++..|+++
T Consensus 189 ~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~-~~~V~~ea~~~ 262 (591)
T 2vgl_B 189 ESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHA-NSAVVLSAVKV 262 (591)
T ss_dssp TSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSS-TTHHHHHHHHH
T ss_pred hhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 7654221 111224566777777644 34556777777777542 2222 2466677777765 48899999999
Q ss_pred HHHHhcc---ChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 400 LHTICLS---DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 400 L~~l~~~---~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
+..+... +++..+.+. ..+.+.|+.|+. +++.+|..|...|..+..+
T Consensus 263 i~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNMLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HHHSCCSCCBTTBSHHHHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCHHHHHHHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 9998742 333334433 356677777664 7788999999888888654
No 96
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.70 E-value=2.1e-07 Score=96.98 Aligned_cols=248 Identities=14% Similarity=0.068 Sum_probs=171.7
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCH
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 256 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i 256 (456)
..++..++..|..++..-.. .... ...+|.+..+++ +.+++++..++.+|..+...-... .+.. .++
T Consensus 338 ~~vR~~a~~~l~~l~~~~~~--~~~~--~~l~p~l~~~l~------d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~--~~l 404 (588)
T 1b3u_A 338 QHVKSALASVIMGLSPILGK--DNTI--EHLLPLFLAQLK------DECPEVRLNIISNLDCVNEVIGIR-QLSQ--SLL 404 (588)
T ss_dssp HHHHHHHHTTGGGGHHHHCH--HHHH--HHTHHHHHHHHT------CSCHHHHHHHHTTCHHHHHHSCHH-HHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHhhH--hHHH--HHHHHHHHHHhC------CCchHHHHHHHHHHHHHHHhcCHH-HHHH--HHH
Confidence 45666666666666542111 1111 246777888887 557889999888877665322211 1111 378
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcC
Q 012813 257 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDG 336 (456)
Q Consensus 257 ~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g 336 (456)
|.|..++++.+..+|..++.+|..++..-.. .+....+++.+..+|.+.+..+++.|+.+|..++...... .....
T Consensus 405 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~ 480 (588)
T 1b3u_A 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHAT 480 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHH
Confidence 8899999998999999999999988742111 1223457889999999889999999999999997643322 12234
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHH
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM 414 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~ 414 (456)
.+|.|+.++.++ ..+..++.++..++..-. . .......++.|+.++... ++.+|..++.+|..++..-... .
T Consensus 481 llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~-~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~---~ 554 (588)
T 1b3u_A 481 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-Q-DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNS---T 554 (588)
T ss_dssp THHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-H-HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHH---H
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-H-HHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchh---h
Confidence 678888777665 567778888888876311 1 112234688888888754 4899999999999999765332 2
Q ss_pred HHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 415 REEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 415 ~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
.. ..+.+.|..++.+.+.++|..|..+|..+.+
T Consensus 555 ~~-~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 555 LQ-SEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred hH-HHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 22 3677888888888899999999999988764
No 97
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.64 E-value=7.9e-09 Score=86.46 Aligned_cols=56 Identities=21% Similarity=0.412 Sum_probs=49.1
Q ss_pred CCCccccccchhhccCc-------ccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCccc
Q 012813 72 CPEEFKCPLSKELMRDP-------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 128 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dP-------v~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 128 (456)
.++++.|||+.+.|.+| ++++|||+|++.+|.+|+.. ..+||++++++....+.++
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 35789999999999999 99999999999999999987 5799999999987665543
No 98
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.63 E-value=1.3e-08 Score=74.51 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=43.0
Q ss_pred CccccccchhhccCc-ccCCCCccccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 74 EEFKCPLSKELMRDP-VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dP-v~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
++..||||.+.+.+| +++||||+|++.||.+|+.. ..+||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999999997 78999999999999999987 5799999998763
No 99
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.63 E-value=3.2e-07 Score=95.50 Aligned_cols=263 Identities=11% Similarity=0.106 Sum_probs=178.8
Q ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHhhcCchh-hhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 166 FLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSF-RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 166 i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~-r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
++.+++.+.+ +..++..|+..|..++...... +....- ...+|.+..+++ +.++.++..++.+|..++..-
T Consensus 283 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~------d~~~~vR~~a~~~l~~l~~~~ 355 (588)
T 1b3u_A 283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM-SQILPCIKELVS------DANQHVKSALASVIMGLSPIL 355 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH-HTHHHHHHHHHT------CSCHHHHHHHHTTGGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHH-HHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHh
Confidence 3444555543 3566777777777776632211 110111 246777777776 557899999999998886432
Q ss_pred chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhc
Q 012813 244 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 323 (456)
Q Consensus 244 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 323 (456)
... ... +.++|.+..++++.++++|..++.+|..+...-.... .....++.|..++.+.+..++..++.+|..++
T Consensus 356 ~~~-~~~--~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 356 GKD-NTI--EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ--LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp CHH-HHH--HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hHh-HHH--HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 211 111 1378889999999899999999988887764321111 12357888889888888899999999999887
Q ss_pred cCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHH
Q 012813 324 ITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 401 (456)
Q Consensus 324 ~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~ 401 (456)
..-... ......+|.++..+.++ .+++.|+.+|..++..-.. . ......++.|+.++... +..++..++.++.
T Consensus 431 ~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~-~~~~~llp~l~~~~~~~-~~~~R~~a~~~l~ 505 (588)
T 1b3u_A 431 GQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK-E-WAHATIIPKVLAMSGDP-NYLHRMTTLFCIN 505 (588)
T ss_dssp HHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-H-HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHH
T ss_pred HHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-h-hHHHHHHHHHHHHhhCC-CHHHHHHHHHHHH
Confidence 532111 12224678888888876 5788899999998763111 1 12234677787776644 4889999999999
Q ss_pred HHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 402 TICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 402 ~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
.++..-.. .... ..+++.|..++.+.++.+|..+.++|..+.+.
T Consensus 506 ~l~~~~~~---~~~~-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 506 VLSEVCGQ---DITT-KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHHHHH---HHHH-HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHhcCH---HHHH-HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 99875332 1222 37888999999999999999999999998764
No 100
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.62 E-value=1.2e-06 Score=91.93 Aligned_cols=262 Identities=12% Similarity=0.060 Sum_probs=175.1
Q ss_pred hHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 165 HFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 165 ~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
.++.+.+.+.+ ++.++..|+.++..+...+++ .+.+ .+.++.|..+|. +.++.++..|+.+|..++.++
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~-~~~~~~l~~lL~------d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVED-QGFLDSLRDLIA------DSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHH-HHHHHHHHHTTS------CSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hccc-ccHHHHHHHHhC------CCChhHHHHHHHHHHHHHhhC
Confidence 45566777754 478899999999999886544 2233 478899999998 668999999999999998765
Q ss_pred chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhc
Q 012813 244 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 323 (456)
Q Consensus 244 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 323 (456)
.....+.-....++.|+..+.+.++-.+.....+|..++..++.. ...+++.+..+|++.+..++..|++++.++.
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 422101000123566777777888888888888887777433211 1356888889999989999999999999987
Q ss_pred cC----chhhHHHHhcCcHHHHHHHHcCC-chHHHHHHHHHHhhC-----------------C--HHHHHHH-------H
Q 012813 324 IT----HENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLST-----------------N--HRAVEEI-------G 372 (456)
Q Consensus 324 ~~----~~~~~~~v~~g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~-----------------~--~~~~~~i-------~ 372 (456)
.. ++.-.. +-..+.+.|+.++.++ +++..++..|..++. + ...|... .
T Consensus 268 ~~~~~~~~~~~~-~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~ 346 (591)
T 2vgl_B 268 ELLPKDSDYYNM-LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLA 346 (591)
T ss_dssp CSCCBTTBSHHH-HHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTC
T ss_pred hccCCCHHHHHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHC
Confidence 42 222222 2233567777666533 567777777777653 1 1122211 1
Q ss_pred hhCc----HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 373 DLGG----VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 373 ~~g~----i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
+... ++.|...+... +...+..+++++..++...+... ...++.|..++....+.+...+...++.+-+
T Consensus 347 ~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~------~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 347 SQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSA------ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp CSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHH------HHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 2222 34445555544 48899999999999998775432 2456788888888777777777777776643
No 101
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.60 E-value=3.5e-08 Score=72.48 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=45.0
Q ss_pred CCCCCCccccccchhhcc---CcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCC
Q 012813 69 TVSCPEEFKCPLSKELMR---DPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 123 (456)
Q Consensus 69 ~~~~p~~f~Cpi~~~~m~---dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 123 (456)
..+..++..||||++.+. +++++||||.|++.||.+|+.. ..+||+||.++...
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 344566889999999884 4678999999999999999987 57899999987653
No 102
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=7.2e-09 Score=76.43 Aligned_cols=54 Identities=20% Similarity=0.434 Sum_probs=47.4
Q ss_pred CCCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCC
Q 012813 69 TVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTI 124 (456)
Q Consensus 69 ~~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~ 124 (456)
.....+++.||||.+.+.+ +++||||+|++.||.+|+.. ..+||.||+++...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 3456778999999999999 99999999999999999985 789999999987543
No 103
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=8.8e-09 Score=72.31 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=40.6
Q ss_pred CCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 73 PEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 73 p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
.+++.|||+.+.+.+|+++||||+|++.+|.+| ...||++|+++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 357899999999999999999999999999873 5689999998764
No 104
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=4.5e-08 Score=72.96 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=45.6
Q ss_pred CCCCCccccccchhhccCcccC---CCCccccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 70 VSCPEEFKCPLSKELMRDPVIL---ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l---~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
.+..++..||||.+.+.+|+.+ ||||.|++.||.+|+.. ..+||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 3466789999999999998766 99999999999999987 5699999998764
No 105
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.59 E-value=1.9e-08 Score=70.23 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=42.0
Q ss_pred CccccccchhhccC----cccCCCCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 74 EEFKCPLSKELMRD----PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 74 ~~f~Cpi~~~~m~d----Pv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
+++.|||+.+.+.+ +++++|||.|++.+|.+|+.. ..+||++|++++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 46889999999977 788999999999999999997 489999998764
No 106
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.56 E-value=3.4e-08 Score=76.83 Aligned_cols=51 Identities=22% Similarity=0.503 Sum_probs=44.8
Q ss_pred CCCCccccccchhhccC---cccCCCCccccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 71 SCPEEFKCPLSKELMRD---PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m~d---Pv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
...++..||||++.+.+ ++.+||||.|++.||.+|+.. ..+||+||.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 35568899999999988 788999999999999999986 6799999988754
No 107
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.54 E-value=4.5e-06 Score=88.03 Aligned_cols=253 Identities=15% Similarity=0.122 Sum_probs=159.1
Q ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc
Q 012813 166 FLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 244 (456)
Q Consensus 166 i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 244 (456)
....++.+++ +...++-+.-.+..++..+++.... ++..|..-|+ +.++.++..|+.+|.++...
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l------~in~l~kDL~------~~n~~vr~lAL~~L~~i~~~-- 137 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL------MTNCIKNDLN------HSTQFVQGLALCTLGCMGSS-- 137 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH------HHHHHHHHHS------CSSSHHHHHHHHHHHHHCCH--
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH------HHHHHHHhcC------CCCHhHHHHHHHHHHhcCCH--
Confidence 3445555543 3444555555566666544332211 3345555565 56788999999999988632
Q ss_pred hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhcc
Q 012813 245 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 324 (456)
Q Consensus 245 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 324 (456)
.+.. .+++.+..+|.+.++.+|+.|+.++.++...... +. .+.++.|..+|.+.++.++..|+.+|..++.
T Consensus 138 ---~~~~--~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 138 ---EMCR--DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp ---HHHH--HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred ---HHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence 2333 3678888999999999999999999988764321 12 2678888899988899999999999999987
Q ss_pred CchhhHHHHhcCcHHHHHHHHcC-----------------CchHHHHHHHHHHhhCC-HHHHHH----------------
Q 012813 325 THENKARAVRDGGVSVILKKIMD-----------------GVHVDELLAILAMLSTN-HRAVEE---------------- 370 (456)
Q Consensus 325 ~~~~~~~~v~~g~v~~Lv~lL~~-----------------~~~~~~a~~~L~~L~~~-~~~~~~---------------- 370 (456)
......... ...+|.|+++|.+ +-.+...+.+|..++.. ++....
T Consensus 209 ~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 209 RSPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSK 287 (618)
T ss_dssp SHHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSS
T ss_pred hChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccccc
Confidence 643211111 2466777766542 12344455666665543 221100
Q ss_pred -------------HHh--------hCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhh
Q 012813 371 -------------IGD--------LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 429 (456)
Q Consensus 371 -------------i~~--------~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~ 429 (456)
+.. ..++..|..++.++ ++.+|..|+.+|..++...+. .+ ......+...+.
T Consensus 288 ~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~----~~--~~~~~~i~~~l~ 360 (618)
T 1w63_A 288 NVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHN----AV--QRHRSTIVDCLK 360 (618)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHH----HH--GGGHHHHHHGGG
T ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHH----HH--HHHHHHHHHHcc
Confidence 000 02456677777654 478888888888888875442 22 134456666677
Q ss_pred cCCHHHHHHHHHHHHHHhcc
Q 012813 430 DGTARAKRKATGILERLKRT 449 (456)
Q Consensus 430 ~~~~~~k~~A~~~L~~l~~~ 449 (456)
+.+..+|++|..+|..+...
T Consensus 361 d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 361 DLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp SSCHHHHHHHHHHHHHHCCS
T ss_pred CCChhHHHHHHHHHHHHccc
Confidence 77777888888888777654
No 108
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.51 E-value=4e-08 Score=68.56 Aligned_cols=48 Identities=21% Similarity=0.532 Sum_probs=42.4
Q ss_pred CCccccccchhhccC---cccCC-CCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 73 PEEFKCPLSKELMRD---PVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 73 p~~f~Cpi~~~~m~d---Pv~l~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
.++..|||+.+.+.+ ++.+| |||.|++.+|.+|+.. ..+||.+|.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 457889999999988 78887 9999999999999987 679999998763
No 109
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.48 E-value=1.1e-07 Score=77.33 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=43.6
Q ss_pred CCCCccccccchhhccCcc------------------cCCCCccccHHHHHHHHhc----CCCCCCCCcccccC
Q 012813 71 SCPEEFKCPLSKELMRDPV------------------ILASGQTFDRPYIQRWLKA----GNRTCPRTQQVLSH 122 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m~dPv------------------~l~~g~~~~r~~I~~~~~~----~~~~~P~~~~~l~~ 122 (456)
..+.+..||||++.|.+|+ +++|||.|++.||.+|+.. ...+||.||.++..
T Consensus 21 ~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3455679999999999886 7899999999999999952 35689999988754
No 110
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=5.2e-08 Score=72.82 Aligned_cols=50 Identities=26% Similarity=0.466 Sum_probs=44.3
Q ss_pred CCCccccccchhhccCc---ccCCCCccccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 72 CPEEFKCPLSKELMRDP---VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dP---v~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
..++..||||++.+.++ +.+||||.|++.||.+|+.. ..+||+||+++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 34578899999999988 77899999999999999987 5799999998765
No 111
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.44 E-value=3.1e-08 Score=73.82 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=40.2
Q ss_pred CccccccchhhccCcccCCCCcc-ccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 74 EEFKCPLSKELMRDPVILASGQT-FDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
+++.||||.+.+.|||++||||+ ||+.|+.+| ..||+||+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 36889999999999999999999 999999998 679999998764
No 112
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.44 E-value=6e-08 Score=94.39 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=45.0
Q ss_pred ccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCC
Q 012813 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTI 124 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~ 124 (456)
...||||.+.+.+||++||||+||+.||.+|+.....+||+||+++....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 47999999999999999999999999999999854789999999987543
No 113
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.40 E-value=1.7e-06 Score=94.30 Aligned_cols=258 Identities=11% Similarity=0.109 Sum_probs=168.5
Q ss_pred CchhHHHHHHHHHHHhhcCc-hhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcch---hHHHhc
Q 012813 176 TLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN---KKLVAE 251 (456)
Q Consensus 176 ~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~---~~~i~~ 251 (456)
+...+..|+..|..++.... ..-..... ..++.|+..+. +.++.++..++++|..++..-.. ......
T Consensus 382 ~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 453 (861)
T 2bpt_A 382 NWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMN------DQSLQVKETTAWCIGRIADSVAESIDPQQHLP 453 (861)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGG------CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH
T ss_pred ChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 35678889999999886432 21112222 47788888887 55789999999999888643211 011111
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCc--cchhhcc--cCccHHHHhccccC--ChhHHHHHHHHHHHhccC
Q 012813 252 TPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGK--SGALKPLIDLLDEG--HQSAMKDVASAIFNLCIT 325 (456)
Q Consensus 252 ~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~--~~~~i~~--~G~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~ 325 (456)
.++|.|+..|++. +.++..++++|.+++..-. ....+.. ..+++.|+.++.+. +..++..++.+|..++..
T Consensus 454 --~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 454 --GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp --HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 2677788888775 8999999999999875321 0111211 35678888888753 368899999999999864
Q ss_pred chh-hHHHHhcCcHHHHHHHHcCC-----------------chHHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhh
Q 012813 326 HEN-KARAVRDGGVSVILKKIMDG-----------------VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRE 386 (456)
Q Consensus 326 ~~~-~~~~v~~g~v~~Lv~lL~~~-----------------~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~ 386 (456)
... ....+. ..+|.+++.+... .++..++.+|..++.. +..-.... ...++.++.+++.
T Consensus 531 ~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~ 608 (861)
T 2bpt_A 531 ATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEK 608 (861)
T ss_dssp CCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHS
T ss_pred cchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHcc
Confidence 432 222222 3667777776521 3455677888887752 21100011 1356777788876
Q ss_pred cCCh-hHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 387 STCD-RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 387 ~~~~-~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
.. . .+++.++.++..++..........+ ..+++.|...+.+.++.++..|..++..+.+.
T Consensus 609 ~~-~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 609 KD-SAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp TT-GGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 53 4 7899999999998876544444444 35778888888777888999999988877654
No 114
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.34 E-value=8.4e-05 Score=78.32 Aligned_cols=249 Identities=9% Similarity=0.049 Sum_probs=172.0
Q ss_pred hHHHHHHHhc-CCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 165 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 165 ~i~~Lv~~L~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
.++.+.+.|. .++.++..|+.++..+...+++. .+ +.++.+..+|. +.|+.++..|+.+|..+...+
T Consensus 143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v~--~~~~~l~~lL~------D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----ME--MFLPATKNLLN------EKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----GG--GGGGGTTTSTT------CCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----HH--HHHHHHHHHhC------CCCHhHHHHHHHHHHHHHHhC
Confidence 3455666665 45778999999999998876543 22 57788888887 668999999999999998765
Q ss_pred chhHHHhcCCCCHHHHHHHHhc---------------CCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccc---
Q 012813 244 NNKKLVAETPMVIPLLMDALRS---------------GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD--- 305 (456)
Q Consensus 244 ~~~~~i~~~~~~i~~Lv~lL~~---------------~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~--- 305 (456)
........ ..+|.++.+|.+ .++-.+.....+|..++..+... ....++.|..++.
T Consensus 211 ~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~ 284 (618)
T 1w63_A 211 PDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTE 284 (618)
T ss_dssp HHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSC
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccc
Confidence 43222222 378888888764 36778888889999888754321 1123445555543
Q ss_pred ---cCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHH
Q 012813 306 ---EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCM 380 (456)
Q Consensus 306 ---~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~L 380 (456)
+.+..+...|++++..+...+..+ ..+++.|.+++.++ .++..|+.+|..++.... ..+.. ....+
T Consensus 285 ~~~~~~~aV~~ea~~~i~~l~~~~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p--~~~~~--~~~~i 355 (618)
T 1w63_A 285 TSKNVGNAILYETVLTIMDIKSESGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH--NAVQR--HRSTI 355 (618)
T ss_dssp CSSTHHHHHHHHHHHHHHHSCCCHHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH--HHHGG--GHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH--HHHHH--HHHHH
Confidence 234578889999999886543221 14678888888753 788999999998886421 12222 35677
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 381 LRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 381 v~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
+.++... +..++..|+.+|..++.... ...+ +..|...+.+.++..|+.+...+..++..
T Consensus 356 ~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~i------v~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 356 VDCLKDL-DVSIKRRAMELSFALVNGNN--IRGM------MKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHGGGSS-CHHHHHHHHHHHHHHCCSSS--THHH------HHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHccCC-ChhHHHHHHHHHHHHccccc--HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 7777754 48899999999999988543 2233 35566667777888888888888888653
No 115
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=2.2e-07 Score=69.41 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=38.9
Q ss_pred CccccccchhhccCcccCCCCcc-ccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 74 EEFKCPLSKELMRDPVILASGQT-FDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
+++.||||++.+.+||++||||+ ||+.|+.+ ...||+||+++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 36789999999999999999999 99999964 3679999998865
No 116
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.28 E-value=1.4e-07 Score=78.77 Aligned_cols=56 Identities=21% Similarity=0.412 Sum_probs=50.1
Q ss_pred CCCccccccchhhccCc-------ccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCCccc
Q 012813 72 CPEEFKCPLSKELMRDP-------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 128 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dP-------v~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 128 (456)
-++.+.|||+.+.+.+| +.++|||+|+..+|.+|+.. ..+||.+|.++...++.|+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 46688999999999998 88999999999999999987 6799999999988777664
No 117
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.28 E-value=1e-05 Score=74.49 Aligned_cols=184 Identities=10% Similarity=0.067 Sum_probs=133.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccC-CccchhhcccCccHHHHhccc-cCChhHHHHHHHHHHHhccCchhhHHHHh
Q 012813 257 PLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVR 334 (456)
Q Consensus 257 ~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~-~~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~v~ 334 (456)
+.+...+.+.+...|..++..|..+... +.....- -..+++.|..+|. +.+..++..|+.+|..|+..-.....-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3477888889999999999999988764 2211100 1356788888884 88999999999999999953321111111
Q ss_pred cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhcc-Chh-h
Q 012813 335 DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS-DRT-K 410 (456)
Q Consensus 335 ~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~-~~~-~ 410 (456)
...+|.|++.+.++ .+++.|..+|.+++..... . ..++.|...+++. ++.+|..++..|..+... .+. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCc
Confidence 24789999999876 6788999999998874321 1 2467778888865 589999999999996543 333 1
Q ss_pred HHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 411 WKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 411 ~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
....+ ...++.|..++.+..+.+|..|...+..+.++.
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 12333 367899999999999999999999999887654
No 118
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.28 E-value=4.1e-06 Score=91.55 Aligned_cols=265 Identities=12% Similarity=0.093 Sum_probs=167.3
Q ss_pred HHHhc-CCchhHHHHHHHHHHHhhcCc-hhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchh-
Q 012813 170 LKKMS-ATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK- 246 (456)
Q Consensus 170 v~~L~-~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~- 246 (456)
...+. .+...+..|+..|..++.... +.-..... ..++.|+..++ +.++.++..|+++|.+++..-...
T Consensus 372 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~~~~~ 443 (876)
T 1qgr_A 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMK------DPSVVVRDTAAWTVGRICELLPEAA 443 (876)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHT------CSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHhCchhc
Confidence 33443 346778889999999887533 22112222 57888888887 567899999999999987543211
Q ss_pred --HHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCc------------cchhhcc--cCccHHHHhccccC---
Q 012813 247 --KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS------------NKEVIGK--SGALKPLIDLLDEG--- 307 (456)
Q Consensus 247 --~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~------------~~~~i~~--~G~i~~Lv~lL~~~--- 307 (456)
..... .+++.|+..|.+. +.++..++++|.+++..-. ....+.. ..+++.|+.++...
T Consensus 444 ~~~~~l~--~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 444 INDVYLA--PLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGH 520 (876)
T ss_dssp SSTTTHH--HHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSC
T ss_pred ccHHHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcc
Confidence 11111 2567778888774 8899999999999875321 0111211 35778888888754
Q ss_pred ChhHHHHHHHHHHHhccCch-hhHHHHhcCcHHHHHHHHcC----------C-------chHHHHHHHHHHhhCC-H-HH
Q 012813 308 HQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMD----------G-------VHVDELLAILAMLSTN-H-RA 367 (456)
Q Consensus 308 ~~~~~~~a~~aL~~L~~~~~-~~~~~v~~g~v~~Lv~lL~~----------~-------~~~~~a~~~L~~L~~~-~-~~ 367 (456)
+..++..++.+|..++.... .....+ ...++.+++.+.. . .++..++.+|..++.. + +.
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~ 599 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAV-QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD 599 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHH-HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHH-HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 34677788888888875432 222221 2456666665542 1 2346678888888764 2 22
Q ss_pred HHHHHhhCcHHHHHHHhhhcCC-hhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHHHHHHHHHHHHH
Q 012813 368 VEEIGDLGGVSCMLRIIRESTC-DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILER 445 (456)
Q Consensus 368 ~~~i~~~g~i~~Lv~ll~~~~~-~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~-~~~~k~~A~~~L~~ 445 (456)
-.... ...++.++.++++..+ ..+++.++.++..++..........+ ..+++.|...+.+. ++.++..|.+++..
T Consensus 600 ~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~~l~~ 676 (876)
T 1qgr_A 600 ALQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676 (876)
T ss_dssp HHTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 11111 2357777888875421 36899999999999875443333333 24667888888876 78899999999988
Q ss_pred Hhcc
Q 012813 446 LKRT 449 (456)
Q Consensus 446 l~~~ 449 (456)
+.+.
T Consensus 677 l~~~ 680 (876)
T 1qgr_A 677 LCRA 680 (876)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 119
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.27 E-value=1.3e-05 Score=87.50 Aligned_cols=269 Identities=9% Similarity=0.062 Sum_probs=173.0
Q ss_pred hHHHHHHHhcC---CchhHHHHHHHHHHHhhcCchhh-hhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 165 HFLSLLKKMSA---TLPDQTEAAKELRLLTKRMPSFR-ALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 165 ~i~~Lv~~L~~---~~~~~~~a~~~L~~L~~~~~~~r-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
.++.+++.+.. +..++..|++.|..+...-..+- ..... ...++.+...+. +.+.+++..++.+|..+.
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~il~~l~~~~~------~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQ------CPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH-HHHHHHHHHHTT------CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHcC------CCCHHHHHHHHHHHHHHH
Confidence 34555566654 35678889999988775322110 00011 124555666555 457889999999998876
Q ss_pred cCcc--hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCc------------c----c--hhhcc---cCcc
Q 012813 241 IHDN--NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS------------N----K--EVIGK---SGAL 297 (456)
Q Consensus 241 ~~~~--~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~------------~----~--~~i~~---~G~i 297 (456)
.... ....+ . ..+++.++..+.+.+..++..++..+.+++.... . + ..... ...+
T Consensus 246 ~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 323 (876)
T 1qgr_A 246 SLYYQYMETYM-G-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (876)
T ss_dssp HHSGGGCHHHH-T-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred HHhHHHHHHHH-H-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHh
Confidence 5332 12222 2 1478888888888889999999988888865310 0 0 00110 2456
Q ss_pred HHHHhcccc-------CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC--HH
Q 012813 298 KPLIDLLDE-------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN--HR 366 (456)
Q Consensus 298 ~~Lv~lL~~-------~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~ 366 (456)
+.+++.|.. ++..++..|+.+|..++..... .++. .+++.+...+.++ ..++.|+.+|..++.. ++
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~ 400 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH
Confidence 777777752 2456888899999888754321 1222 3566666666665 5788899999999975 23
Q ss_pred HHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhH--HHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012813 367 AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKW--KAMREEESTHGTISKLAQDGTARAKRKATGILE 444 (456)
Q Consensus 367 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~--~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~ 444 (456)
...... ...++.|+..+... ++.++..|+++|.+++...+... ...+ ...++.|...+.+. ++++..|+++|.
T Consensus 401 ~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~ 475 (876)
T 1qgr_A 401 QLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFS 475 (876)
T ss_dssp HHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 332222 23688888888754 48999999999999998754311 1122 25667777777764 889999999999
Q ss_pred HHhcch
Q 012813 445 RLKRTV 450 (456)
Q Consensus 445 ~l~~~~ 450 (456)
++....
T Consensus 476 ~l~~~~ 481 (876)
T 1qgr_A 476 SLAEAA 481 (876)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988653
No 120
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.25 E-value=1.6e-06 Score=98.78 Aligned_cols=270 Identities=12% Similarity=0.056 Sum_probs=178.3
Q ss_pred hhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 164 DHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 164 ~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
..+..+++.+.+ +...+..|...|.+........-..-.. ...++.|+..|. +.++.++..|+.+|.++...
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~-~~il~~Ll~~L~------d~~~~vR~~A~~~L~~l~~~ 78 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE-RKVVKMILKLLE------DKNGEVQNLAVKCLGPLVSK 78 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH-HHHHHHHHHHTT------CSSHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHH-HHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHh
Confidence 456778887754 5677888888888765532110000001 246677888887 55789999999999988754
Q ss_pred cchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccc------hhhcccCccHHHHhccc-cCChhHHHHH
Q 012813 243 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK------EVIGKSGALKPLIDLLD-EGHQSAMKDV 315 (456)
Q Consensus 243 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~------~~i~~~G~i~~Lv~lL~-~~~~~~~~~a 315 (456)
-.. . ... .+++.|+..|.+++..+|..++.+|..++..-... ..-.-..+++.|+..+. +++..++..|
T Consensus 79 ~~~-~-~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~a 154 (1230)
T 1u6g_C 79 VKE-Y-QVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154 (1230)
T ss_dssp SCH-H-HHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred CCH-H-HHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHH
Confidence 332 1 111 25677888888888889999999998887532211 01112467899999998 4788999999
Q ss_pred HHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHH
Q 012813 316 ASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK 393 (456)
Q Consensus 316 ~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 393 (456)
+.+|..++........-.-...++.|+..|.++ .++..|+.+|..++..... .+ -...++.|+..+....+...+
T Consensus 155 l~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~~~r 231 (1230)
T 1u6g_C 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTT 231 (1230)
T ss_dssp HHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSC
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCchhHH
Confidence 999999985321100001123556666666654 6788899999999875321 12 223588888888765434567
Q ss_pred HHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012813 394 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 449 (456)
Q Consensus 394 ~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~ 449 (456)
..++.++..++...+......+ ...++.+...+++.++.+|+.|...+..+.+.
T Consensus 232 ~~a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 232 RTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp TTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7888898888876543322222 36778888888888888999999999888664
No 121
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.24 E-value=1.2e-05 Score=80.84 Aligned_cols=264 Identities=7% Similarity=0.020 Sum_probs=171.2
Q ss_pred HHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCC--ChhhHHHHHHHHHccccCc-
Q 012813 168 SLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGI--NPNLQEDVITTLLNLSIHD- 243 (456)
Q Consensus 168 ~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~--~~~~~~~a~~~L~~Ls~~~- 243 (456)
.++..+.+ +... ..+...|..++..... . ..-.+.++.|+..+. +. ++.+++.++.+|..++..-
T Consensus 94 ~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~-~---~~w~~ll~~L~~~l~------~~~~~~~~r~~al~~l~~l~~~~~ 162 (462)
T 1ibr_B 94 YVLQTLGTETYRP-SSASQCVAGIACAEIP-V---NQWPELIPQLVANVT------NPNSTEHMKESTLEAIGYICQDID 162 (462)
T ss_dssp HHHHHTTCCCSSS-CSHHHHHHHHHHHHGG-G---TCCTTHHHHHHHHHH------CTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCCCCchh-hHHHHHHHHHHHHhcc-c---cccHHHHHHHHHHhc------cCCCCHHHHHHHHHHHHHHHHhCC
Confidence 35555543 2344 5566667777664211 0 011578888988887 44 7889999999999887532
Q ss_pred -chhHHHhcCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccCC-ccc-hhhcccCccHHHHhccccCChhHHHHHHHH
Q 012813 244 -NNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALD-SNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASA 318 (456)
Q Consensus 244 -~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~aL~~Ls~~~-~~~-~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~a 318 (456)
+.-..... .+++.++..|.+. +..+|..++.++.++...- ++- ......-+++.|..++.+.+..++..++.+
T Consensus 163 ~~~~~~~~~--~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~ 240 (462)
T 1ibr_B 163 PEQLQDKSN--EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 240 (462)
T ss_dssp GGGTGGGHH--HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred chhhHhHHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 11111111 3678888889887 7999999999999875421 110 000111246667777777889999999999
Q ss_pred HHHhccCchhhH-HHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHH------------------Hh---h
Q 012813 319 IFNLCITHENKA-RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEI------------------GD---L 374 (456)
Q Consensus 319 L~~L~~~~~~~~-~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i------------------~~---~ 374 (456)
|..++....... ..+..+.++.++..+.+. .++..++..+..++........+ .+ .
T Consensus 241 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (462)
T 1ibr_B 241 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (462)
T ss_dssp HHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence 999986543211 112226778777777754 67788888888887643111111 11 1
Q ss_pred CcHHHHHHHhhhc------CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 375 GGVSCMLRIIRES------TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 375 g~i~~Lv~ll~~~------~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
..++.++..+... .+...+..|..+|..++...+. .++ ..+++.+...+++.+.++|..|..+|..+..
T Consensus 321 ~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 2456666666532 1246788999999999887653 333 3667888888888899999999999999875
Q ss_pred c
Q 012813 449 T 449 (456)
Q Consensus 449 ~ 449 (456)
.
T Consensus 396 ~ 396 (462)
T 1ibr_B 396 G 396 (462)
T ss_dssp S
T ss_pred C
Confidence 3
No 122
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.19 E-value=1.7e-05 Score=86.42 Aligned_cols=267 Identities=11% Similarity=0.128 Sum_probs=167.8
Q ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHhhcCchh--hhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 166 FLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSF--RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 166 i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~--r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
++.++..+.+ ++.++..+++.|..++..-... ..... ...++.|+..+. + ++.++..|+.+|.++...
T Consensus 413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~------~-~~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQ------D-HPKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHT------S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhc------c-ChHHHHHHHHHHHHHHHh
Confidence 4445555543 3567778888888887642111 01111 246777777775 3 378999999999887643
Q ss_pred c-----chhHHHhcCCCCHHHHHHHHhcCC--HHHHHHHHHHHHHhccCCccc-hhhcccCccHHHHhccccC-------
Q 012813 243 D-----NNKKLVAETPMVIPLLMDALRSGT--IETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEG------- 307 (456)
Q Consensus 243 ~-----~~~~~i~~~~~~i~~Lv~lL~~~~--~~~~~~aa~aL~~Ls~~~~~~-~~i~~~G~i~~Lv~lL~~~------- 307 (456)
- ..-..... .+++.|+.++++.+ ..+|..++.+|..+....... .... ...++.+++.|...
T Consensus 484 ~~~~~~~~l~~~~~--~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i 560 (861)
T 2bpt_A 484 LAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQ 560 (861)
T ss_dssp HSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGG
T ss_pred cccccchhhHHHHH--HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhccc
Confidence 1 11111111 35677888887543 678999999999887643321 1111 23566666665421
Q ss_pred --------ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCH--HHHHHHHhh
Q 012813 308 --------HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNH--RAVEEIGDL 374 (456)
Q Consensus 308 --------~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~--~~~~~i~~~ 374 (456)
...++..++.+|.+++..-.....-.-...++.++..+.+. .+++.++.++..++... +....+ .
T Consensus 561 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~- 638 (861)
T 2bpt_A 561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-E- 638 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-H-
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-H-
Confidence 34567788899988875433211111124677788888754 57888888888887532 111111 1
Q ss_pred CcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCC--HHHHHHHHHHHHHHhcc
Q 012813 375 GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGT--ARAKRKATGILERLKRT 449 (456)
Q Consensus 375 g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~--~~~k~~A~~~L~~l~~~ 449 (456)
..++.|+..+.. .++.++..|+.++..++..........+ ..+++.+...+++.+ +.+|..+..++..+..+
T Consensus 639 ~i~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 639 TFSPYLLKALNQ-VDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHHHHC-TTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 257778888864 3478999999999999886655444444 367777788777654 67999999999887654
No 123
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.17 E-value=7.8e-07 Score=64.05 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=42.8
Q ss_pred CCccccccchhhccCcccC--CCCcc-ccHHHHHHHHhcCCCCCCCCccccc
Q 012813 73 PEEFKCPLSKELMRDPVIL--ASGQT-FDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 73 p~~f~Cpi~~~~m~dPv~l--~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
+++..|+|+++-.+|++++ ||||. ++..++.+|+.. +..||++|+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3467899999999999988 99999 799999999986 578999999875
No 124
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=6.7e-07 Score=67.76 Aligned_cols=49 Identities=24% Similarity=0.444 Sum_probs=40.6
Q ss_pred CccccccchhhccC--------------cccCC-CCccccHHHHHHHHhcCCCCCCCCcccccCC
Q 012813 74 EEFKCPLSKELMRD--------------PVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 123 (456)
Q Consensus 74 ~~f~Cpi~~~~m~d--------------Pv~l~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 123 (456)
++-.|+||.+.|.+ ++.++ |||.|.+.||.+|+.. +.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 45679999999987 44554 9999999999999987 57999999987643
No 125
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.11 E-value=5.3e-07 Score=70.44 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=41.5
Q ss_pred CCccccccchhhccCcccC---CCCccccHHHHHHHHhc----C---CCCCCC--Cccc--ccCC
Q 012813 73 PEEFKCPLSKELMRDPVIL---ASGQTFDRPYIQRWLKA----G---NRTCPR--TQQV--LSHT 123 (456)
Q Consensus 73 p~~f~Cpi~~~~m~dPv~l---~~g~~~~r~~I~~~~~~----~---~~~~P~--~~~~--l~~~ 123 (456)
.+.|+||||.+.+.+|+++ +|||.||+.|+.+|+.. + ...||. |+.. ++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 3578999999999999875 79999999999999863 2 236999 9887 5543
No 126
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.10 E-value=1.2e-06 Score=62.91 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=41.7
Q ss_pred ccccccchhhccCcccC--CCCcc-ccHHHHHHHHhcCCCCCCCCccccc
Q 012813 75 EFKCPLSKELMRDPVIL--ASGQT-FDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l--~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
...|+|+++-.+|++++ ||||. +++.++.+|+.. +..||++|+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 56799999999999988 99998 899999999986 578999999875
No 127
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.95 E-value=1.1e-06 Score=66.07 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=39.1
Q ss_pred CccccccchhhccCcccCCCCcc-ccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 74 EEFKCPLSKELMRDPVILASGQT-FDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
++..|+||++.+.|||++||||. ||+.|+.+|. .||+||+++..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 36789999999999999999999 8999998773 79999998764
No 128
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.94 E-value=9.3e-05 Score=68.59 Aligned_cols=191 Identities=8% Similarity=0.108 Sum_probs=132.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-hccC-Cccchhhcc-cCccHHHHhcc-ccCChhHHHHHHHHHHHhccCchhhHHHH-
Q 012813 259 LMDALRSGTIETRSNAAAALFT-LSAL-DSNKEVIGK-SGALKPLIDLL-DEGHQSAMKDVASAIFNLCITHENKARAV- 333 (456)
Q Consensus 259 Lv~lL~~~~~~~~~~aa~aL~~-Ls~~-~~~~~~i~~-~G~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~~~~~~~v- 333 (456)
+-..+.+.++.-|..++..|.. +... ........+ ...+..|.+.+ .+.+..++..|+.+|..|+..-.+ ..+.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-ccccH
Confidence 4556788999999999999998 8642 111100122 35677888888 677889999999999999843220 1221
Q ss_pred h--cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH-HHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccCh
Q 012813 334 R--DGGVSVILKKIMDG--VHVDELLAILAMLSTNH-RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR 408 (456)
Q Consensus 334 ~--~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~ 408 (456)
. .-.+|.+++.+.+. .+++.+..+|..++..- .....-.=...++.|+..|++. ++.+|+.++.+|..++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence 1 23689999999886 57788888888877521 1000000002467788888876 48999999999999987665
Q ss_pred h---hHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhc
Q 012813 409 T---KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 452 (456)
Q Consensus 409 ~---~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~~ 452 (456)
. .....+ ...+++.|.+++.+.++.+|..|..+|..+.++-..
T Consensus 179 ~~~~~l~~~l-~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 179 DGYSTLQRYL-KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp SCSHHHHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred CcchhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 2 211222 137889999999999999999999999988766443
No 129
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.93 E-value=1.2e-06 Score=84.80 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=40.8
Q ss_pred CCccccccchhhccCcccCCCCcc-ccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 73 PEEFKCPLSKELMRDPVILASGQT-FDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 73 p~~f~Cpi~~~~m~dPv~l~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
.+++.||||.+.+.+||++||||+ ||+.|+.+| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 457899999999999999999999 999999988 579999998764
No 130
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.92 E-value=6.4e-05 Score=85.58 Aligned_cols=227 Identities=14% Similarity=0.098 Sum_probs=152.7
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
...++.+++.|.+ +...|..|+..|..++..... ..+ ...++.|+..+. +.++.++..|+.+|..++.
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~---~~i~~~Ll~~l~------d~~~~vR~~a~~~L~~i~~ 115 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV---ETIVDTLCTNML------SDKEQLRDISSIGLKTVIG 115 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH---HHHHHHHHHHTT------CSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH---HHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHH
Confidence 3456777887854 467888899999998874333 111 235667777776 4567888888888887753
Q ss_pred Ccch-------hHHHhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHH
Q 012813 242 HDNN-------KKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMK 313 (456)
Q Consensus 242 ~~~~-------~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~ 313 (456)
.-.. ...... .++|.|+..+. +++...+..|+.+|..++........-.-...++.|+..|.+.+..++.
T Consensus 116 ~l~~~~~~~~~~~~~~~--~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~ 193 (1230)
T 1u6g_C 116 ELPPASSGSALAANVCK--KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRK 193 (1230)
T ss_dssp HCC-----CCTHHHHHH--HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHH
T ss_pred hCCCcccccchHHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 3221 111222 37888999998 4789999999999999874211100001145788888899888899999
Q ss_pred HHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCC-HHHHHHHHh--hCcHHHHHHHhhhc
Q 012813 314 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN-HRAVEEIGD--LGGVSCMLRIIRES 387 (456)
Q Consensus 314 ~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~-~~~~~~i~~--~g~i~~Lv~ll~~~ 387 (456)
.|+.+|..++...... + -...++.|+..|.+. ..+..++.+|..++.. ++ .+.. ...++.++..+...
T Consensus 194 ~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~ 267 (1230)
T 1u6g_C 194 RTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVD 267 (1230)
T ss_dssp HHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCC
Confidence 9999999998755432 1 224688888888643 4556677777777652 11 2221 24688888888754
Q ss_pred CChhHHHHHHHHHHHHhccChh
Q 012813 388 TCDRNKENCIAILHTICLSDRT 409 (456)
Q Consensus 388 ~~~~~~~~A~~~L~~l~~~~~~ 409 (456)
++.+++.|+.++..++...+.
T Consensus 268 -~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 268 -DDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp -CTTTHHHHHHHHHHHHHCTTC
T ss_pred -CHHHHHHHHHHHHHHHHHChH
Confidence 488999999999998886554
No 131
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.90 E-value=6.2e-06 Score=65.62 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=39.9
Q ss_pred ccccccchhhccCc------------------ccCCCCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 75 EFKCPLSKELMRDP------------------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 75 ~f~Cpi~~~~m~dP------------------v~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
+-.|+||.+.|.+| ++++|||.|.+.||.+|+.. +.+||.||+++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 45799999999887 34789999999999999987 689999999864
No 132
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.88 E-value=0.00019 Score=64.34 Aligned_cols=184 Identities=14% Similarity=0.081 Sum_probs=137.7
Q ss_pred hhhHHHHHHHhc-CCchhHHHHHHHHHHHhhcC-chhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 163 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 163 ~~~i~~Lv~~L~-~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
.+.+..|...|. .++.++..++..|-.+-+.- ...+..+.+ ..++.++.++. +.|..+.-.|+.+|..|-
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e--~~Ld~iI~llk------~~dEkval~A~r~L~~LL 103 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE--RHLDVFINALS------QENEKVTIKALRALGYLV 103 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHTCC------STTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH--HHHHHHHHHHh------ccchhHHHHHHHHHHHHH
Confidence 446677788885 45788999999999888863 234444554 58999999998 678999999999999886
Q ss_pred cCcc-hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHH
Q 012813 241 IHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 319 (456)
Q Consensus 241 ~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL 319 (456)
.+.+ ....+.. +..+|.+++++++.-.+..++..|..|..... ..+++..|..++.+.+.+++..|+++|
T Consensus 104 e~vpL~~~~y~K---l~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L 174 (265)
T 3b2a_A 104 KDVPMGSKTFLK---AAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLF 174 (265)
T ss_dssp TTCCBCHHHHHH---HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cCCCCCHHHHHH---HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 5554 4444443 56778999999999999999999999833222 235678888999899999999999999
Q ss_pred HHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH
Q 012813 320 FNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH 365 (456)
Q Consensus 320 ~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~ 365 (456)
.+++...++..-+- +++.-+-++|.+. .+.+.|+.+|..+.+.|
T Consensus 175 ~eia~~S~D~~i~~--~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 175 LNMLNSSADSGHLT--LILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHGGGCSSCCCGG--GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHhhcccCCHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 99998664433221 2334445556654 67999999999998863
No 133
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.87 E-value=0.00099 Score=70.07 Aligned_cols=279 Identities=8% Similarity=0.020 Sum_probs=152.0
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCCccccccccccchhhhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhcc
Q 012813 126 TPNHLIREMISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGES 204 (456)
Q Consensus 126 ~~n~~lk~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~ 204 (456)
.+|..+|+..--+.......-+ + .-.-.+..+.+.|.+ ++..+..|+..|.++.. ++ +.+
T Consensus 85 s~~~~~Krl~YL~l~~~~~~~~----e--------~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~- 145 (621)
T 2vgl_A 85 SNRYTEKQIGYLFISVLVNSNS----E--------LIRLINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE- 145 (621)
T ss_dssp CSCHHHHHHHHHHHHHSCCCCH----H--------HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-
T ss_pred CCCHHHHHHHHHHHHHHccCCc----H--------HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-
Confidence 4677888887766654321110 0 002244566667754 46667788888888854 23 333
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 284 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~ 284 (456)
..++.+...|.+. +.++-++..|+.++.++....+ .++..+++++.|.++|.+.++.++.+|+.+|..++..
T Consensus 146 -~l~~~v~~~l~~~----d~~~~VRK~A~~al~kl~~~~p---~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 146 -AFAGEIPKILVAG----DTMDSVKQSAALCLLRLYRTSP---DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp -HHTTHHHHHHHCS----SSCHHHHHHHHHHHHHHHHHCG---GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhCh---hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 4666777777211 5689999999999998876443 2333346899999999988999999999999999864
Q ss_pred CccchhhcccCccHHHH----hccccC-------------ChhHHHHHHHHHHHhccCc--hhhHHHHhcCcHHHHHHHH
Q 012813 285 DSNKEVIGKSGALKPLI----DLLDEG-------------HQSAMKDVASAIFNLCITH--ENKARAVRDGGVSVILKKI 345 (456)
Q Consensus 285 ~~~~~~i~~~G~i~~Lv----~lL~~~-------------~~~~~~~a~~aL~~L~~~~--~~~~~~v~~g~v~~Lv~lL 345 (456)
+.. .+ ...++.++ +++..+ ++-.+-..+..|..++..+ +.+..+.+ .++.++..+
T Consensus 218 ~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~ 291 (621)
T 2vgl_A 218 NPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKA 291 (621)
T ss_dssp CHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHH
T ss_pred ChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhh
Confidence 421 11 11233333 333211 4556666666666666432 22222221 222233222
Q ss_pred cC-C------------chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHH
Q 012813 346 MD-G------------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWK 412 (456)
Q Consensus 346 ~~-~------------~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 412 (456)
.+ + .+.-.|+.++..+...++.+.. ++..|..++.++ ++.+|-.|+..|..++...+..
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~-----~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~~-- 363 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVR-----ACNQLGQFLQHR-ETNLRYLALESMCTLASSEFSH-- 363 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTTH--
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCcH--
Confidence 11 0 2334455555555433332221 234455555433 3566666666666666544321
Q ss_pred HHHHhhccHHHHHHHhh-cCCHHHHHHHHHHHHHHh
Q 012813 413 AMREEESTHGTISKLAQ-DGTARAKRKATGILERLK 447 (456)
Q Consensus 413 ~~~~~~g~~~~L~~Ll~-~~~~~~k~~A~~~L~~l~ 447 (456)
.++ ......+...+. +.+..+|++|..+|..+.
T Consensus 364 ~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 364 EAV--KTHIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 122 123344444444 555556666666555544
No 134
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.87 E-value=2.9e-06 Score=70.39 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=80.3
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 284 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~ 284 (456)
...++.|+.+|+ +.++.++..|+.+|..+.. . .++.|+.+|+++++.+|..++++|.++..
T Consensus 11 ~~~~~~l~~~L~------~~~~~vR~~A~~~L~~~~~-----------~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~- 71 (131)
T 1te4_A 11 SSGLVPRGSHMA------DENKWVRRDVSTALSRMGD-----------E-AFEPLLESLSNEDWRIRGAAAWIIGNFQD- 71 (131)
T ss_dssp ----------CC------SSCCCSSSSCCSSTTSCSS-----------T-THHHHHHGGGCSCHHHHHHHHHHHGGGCS-
T ss_pred cccHHHHHHHhc------CCCHHHHHHHHHHHHHhCc-----------h-HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-
Confidence 356777788887 4567788878777765521 1 36888888888889999999988887642
Q ss_pred CccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHH
Q 012813 285 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 360 (456)
Q Consensus 285 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~ 360 (456)
..+++.|+.+|.+.++.++..|+++|..+.. ..+++.|++++.++ .++..|+.+|..
T Consensus 72 ---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3468888999988888999999999988752 23678888888764 466667666643
No 135
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.87 E-value=6.4e-05 Score=67.34 Aligned_cols=183 Identities=13% Similarity=0.053 Sum_probs=137.5
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC--ccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCch-hhH
Q 012813 254 MVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKA 330 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~--~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~ 330 (456)
+.+..|..+|...+..++.++..+|-++-..- .-+..+. ...++.++.++++.|..+.-.|+++|..|-.+.+ ...
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 36777889999999999999999999987642 2223333 3578999999999999999999999999987653 222
Q ss_pred HHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccCh
Q 012813 331 RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR 408 (456)
Q Consensus 331 ~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~ 408 (456)
.+.. ++.+|.+++.++ -..++++..|..+--....+ +++..+..++. +.+..+|..|.++|.+++..+.
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~-Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVV-SPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHT-CSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHh-CCChhHHHHHHHHHHHhhcccC
Confidence 2322 567788888865 56888999988882211111 34566778884 5569999999999999999875
Q ss_pred hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 409 TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 409 ~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
.. .++ ..++.-+..++++.++.++++|..+|..+-.++
T Consensus 183 D~--~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 183 DS--GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SC--CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CH--HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 43 233 356667888999999999999999998876553
No 136
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.83 E-value=7e-05 Score=68.83 Aligned_cols=179 Identities=12% Similarity=0.113 Sum_probs=126.9
Q ss_pred hhhhccccccccCCCChhhHHHHHHHHHccccC-cchhHHHhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCcc
Q 012813 210 QLLSPLSESKCENGINPNLQEDVITTLLNLSIH-DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSN 287 (456)
Q Consensus 210 ~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~aL~~Ls~~~~~ 287 (456)
.+...+. +.+...+..|+..|..+... +.... .....+++.|...|. +.+..++..|+.+|..|+..-.
T Consensus 19 ~l~~~l~------s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~- 89 (242)
T 2qk2_A 19 DFYDKLE------EKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA- 89 (242)
T ss_dssp THHHHHT------CSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG-
T ss_pred HHHhhhc------cCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh-
Confidence 3555555 45778999999988887654 22100 011135677888884 8899999999999999985221
Q ss_pred chhhcc--cCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC
Q 012813 288 KEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST 363 (456)
Q Consensus 288 ~~~i~~--~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~ 363 (456)
..+.. ..+++.|+..+.+.+..++..|..+|.+++..... ...++.|...|.+. .++..++..|..+..
T Consensus 90 -~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 90 -KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp -GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 11211 35789999999999999999999999999775431 12577788888765 678889999999654
Q ss_pred C--HH--HHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccC
Q 012813 364 N--HR--AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 364 ~--~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 407 (456)
. ++ ....+ . ..++.|+.++... .+.+|..|..+|..++..-
T Consensus 163 ~~~~~~~~~~~l-~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 163 RTQPTALNKKLL-K-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp TCCGGGCCHHHH-H-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCccHHHH-H-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHc
Confidence 3 33 12222 2 3588889999755 4899999999999988644
No 137
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.4e-05 Score=58.16 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=40.1
Q ss_pred CCCccccccchhhccCcccCCCCcc-ccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 72 CPEEFKCPLSKELMRDPVILASGQT-FDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~dPv~l~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
-.++..|+||++-..|+|++||||. |+..++.+ ...||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3457899999999999999999999 99999983 3689999998764
No 138
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.72 E-value=0.0025 Score=67.03 Aligned_cols=251 Identities=12% Similarity=0.134 Sum_probs=160.0
Q ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc
Q 012813 166 FLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 244 (456)
Q Consensus 166 i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 244 (456)
....++.+++ +...++-+.-.+..++..+++.-.. ++..+..-|+ +.++-++..|+.+|.++...
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L------~iN~l~kDl~------~~n~~ir~lALr~L~~i~~~-- 141 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL------INNAIKNDLA------SRNPTFMGLALHCIANVGSR-- 141 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH------HHHHHHHHHH------SCCHHHHHHHHHHHHHHCCH--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH------HHHHHHHhcC------CCCHHHHHHHHHHhhccCCH--
Confidence 4456666654 3455555666666666644332211 2333444444 56889999999999998542
Q ss_pred hhHHHhcCCCCHHHHHHHH--hcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHh
Q 012813 245 NKKLVAETPMVIPLLMDAL--RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 322 (456)
Q Consensus 245 ~~~~i~~~~~~i~~Lv~lL--~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L 322 (456)
.+.+ .++|.+.+.| .+.++-+|+.|+-++..+....+ ..+...+.++.|.++|.+.++.++..|+.+|..+
T Consensus 142 ---e~~~--~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 142 ---EMAE--AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp ---HHHH--HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---HHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 2433 2667788999 78899999999999999886432 2222358999999999988999999999999999
Q ss_pred ccCchhhHHHHhcCcHHHHHHHHc----CC---------------chHHHHHHHHHHhhC--CHHHHHHHHhhCcHHHHH
Q 012813 323 CITHENKARAVRDGGVSVILKKIM----DG---------------VHVDELLAILAMLST--NHRAVEEIGDLGGVSCML 381 (456)
Q Consensus 323 ~~~~~~~~~~v~~g~v~~Lv~lL~----~~---------------~~~~~a~~~L~~L~~--~~~~~~~i~~~g~i~~Lv 381 (456)
+..... .+ ...+|.+++.|. .+ =.+-..+.+|..++. +++.++.+.+ .+..++
T Consensus 215 ~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il 288 (621)
T 2vgl_A 215 AQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETIL 288 (621)
T ss_dssp HHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHH
T ss_pred HHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHH
Confidence 864432 11 134555554442 21 245667777777775 3455555443 233444
Q ss_pred HHhh---------hcC-ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 382 RIIR---------EST-CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 382 ~ll~---------~~~-~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
..+. +.+ +..+.-.|+.++..+.. .+ ..+ ...+..|..++.+.++.+|.-|...|..+....
T Consensus 289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~----~~~--~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~ 360 (621)
T 2vgl_A 289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EP----NLL--VRACNQLGQFLQHRETNLRYLALESMCTLASSE 360 (621)
T ss_dssp HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CH----HHH--HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT
T ss_pred HhhccCcccccccccchHHHHHHHHHHHHHhcCC-cH----HHH--HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcc
Confidence 3221 111 12556667777777752 22 222 145677888888888899999998888886543
No 139
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.69 E-value=0.0012 Score=62.78 Aligned_cols=145 Identities=6% Similarity=0.035 Sum_probs=115.8
Q ss_pred HhccccCChhHHHHHHHHHHH-hccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhh-Cc
Q 012813 301 IDLLDEGHQSAMKDVASAIFN-LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDL-GG 376 (456)
Q Consensus 301 v~lL~~~~~~~~~~a~~aL~~-L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~-g~ 376 (456)
++-|.+.+.+.++.++.-|.. +..+.+-...+++.+++..|++.+... +.+.+++.+|.+|-.+.+|-..++++ ..
T Consensus 124 iekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~f 203 (339)
T 3dad_A 124 LEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDT 203 (339)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHH
Confidence 344445667788889999988 667778889999999999999999864 78999999999999999999877754 57
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhc---------cHHHHHHHhh---cCCHHHHHHHHHHHH
Q 012813 377 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEES---------THGTISKLAQ---DGTARAKRKATGILE 444 (456)
Q Consensus 377 i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g---------~~~~L~~Ll~---~~~~~~k~~A~~~L~ 444 (456)
|..|+.++.+ ....+...|+++|..++..++.....+..+.. ....|+.+++ +++..++.+|..++.
T Consensus 204 I~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 204 IQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 8999999985 45888999999999999988755444433222 2568888887 678889999988876
Q ss_pred HH
Q 012813 445 RL 446 (456)
Q Consensus 445 ~l 446 (456)
-+
T Consensus 283 ~l 284 (339)
T 3dad_A 283 KT 284 (339)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 140
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.56 E-value=0.0013 Score=65.65 Aligned_cols=221 Identities=10% Similarity=0.079 Sum_probs=147.5
Q ss_pred hhhHHHHHHHHHccccCcchhHHHhcCCC-CHHHHHHHHhc---------------C--CHHHHHHHHHHHHHhccCCcc
Q 012813 226 PNLQEDVITTLLNLSIHDNNKKLVAETPM-VIPLLMDALRS---------------G--TIETRSNAAAALFTLSALDSN 287 (456)
Q Consensus 226 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~-~i~~Lv~lL~~---------------~--~~~~~~~aa~aL~~Ls~~~~~ 287 (456)
...+.-++..|..|...++.|..+...++ .+|.++.++.. + ..+.+-.++-+++-|+..++.
T Consensus 182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~ 261 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence 34455678888888888889998876543 46777655541 1 245678888888999988876
Q ss_pred chhhcccCcc--HHHHhcccc-CChhHHHHHHHHHHHhccCch-----hhHHH-HhcCcHHHHHHHHcCC-----chHHH
Q 012813 288 KEVIGKSGAL--KPLIDLLDE-GHQSAMKDVASAIFNLCITHE-----NKARA-VRDGGVSVILKKIMDG-----VHVDE 353 (456)
Q Consensus 288 ~~~i~~~G~i--~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~-----~~~~~-v~~g~v~~Lv~lL~~~-----~~~~~ 353 (456)
...+...++. +.|+.+++. ..+.+.+-++.+|.||..... ....+ +..++ +.++..|... ++.+.
T Consensus 262 ~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~ed 340 (480)
T 1ho8_A 262 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQD 340 (480)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHH
Confidence 6667666643 667777765 467899999999999987651 11222 33444 5566666532 22222
Q ss_pred HHHH-------HHHhhC---------------CHHHH---------HHHHhhC--cHHHHHHHhhh---------cCChh
Q 012813 354 LLAI-------LAMLST---------------NHRAV---------EEIGDLG--GVSCMLRIIRE---------STCDR 391 (456)
Q Consensus 354 a~~~-------L~~L~~---------------~~~~~---------~~i~~~g--~i~~Lv~ll~~---------~~~~~ 391 (456)
.-.+ ...+++ +|-.+ ..|.+.+ .+..|+++|.+ +.++.
T Consensus 341 l~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~ 420 (480)
T 1ho8_A 341 ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKI 420 (480)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcc
Confidence 1111 112221 12111 1222221 57889999984 22466
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 392 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 392 ~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
+..-||.=|..++.+.|.. +.+++.-|+=..+++|+.+.++.+|..|..+++.+-.
T Consensus 421 ~laVAc~Digefvr~~P~g-r~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 421 IIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred eEEeecccHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777888899999988754 6788888999999999999999999999999987654
No 141
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.55 E-value=0.00011 Score=60.69 Aligned_cols=118 Identities=16% Similarity=0.110 Sum_probs=85.0
Q ss_pred hHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 165 HFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 165 ~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
.++.++..|.+ +...+..|+..|..+. . ..++.|+.+|. +.++.++..|+.+|.++..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~-----------~--~~~~~L~~~L~------d~~~~vR~~A~~aL~~~~~-- 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMG-----------D--EAFEPLLESLS------NEDWRIRGAAAWIIGNFQD-- 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCS-----------S--TTHHHHHHGGG------CSCHHHHHHHHHHHGGGCS--
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------c--hHHHHHHHHHc------CCCHHHHHHHHHHHHhcCC--
Confidence 45567777754 3555555555444321 2 23688899998 5689999999999998752
Q ss_pred chhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHh
Q 012813 244 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 322 (456)
Q Consensus 244 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L 322 (456)
...++.|+.+|+++++.+|..++++|.++. ...+++.|+.+|++.++.++..|+.+|..+
T Consensus 72 ---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 135888999999999999999999999875 345789999999988999999999998753
No 142
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.55 E-value=0.0039 Score=68.08 Aligned_cols=264 Identities=13% Similarity=0.133 Sum_probs=172.1
Q ss_pred hhHHHHHHHhcCCchhHHHHHHHHHHHhhcCchh--hhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 164 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSF--RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 164 ~~i~~Lv~~L~~~~~~~~~a~~~L~~L~~~~~~~--r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
+.+..|.+.+..-- ..+.|+..+..++...... -+.+.- +.++.++..+. +....++..|-.++..+..
T Consensus 54 ~~~~~~~~~~~~k~-~~~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~------dk~~~v~~aa~~~~~~~~~ 124 (986)
T 2iw3_A 54 HFFGELAKGIKDKK-TAANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAG------NKDKEIQSVASETLISIVN 124 (986)
T ss_dssp HHHHHHHHHHTSHH-HHHHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTT------CSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhc------CCchHHHHHHHHHHHHHHH
Confidence 34455555554321 1177888888888643221 111111 24555555554 3356777776666555432
Q ss_pred C-cchhHHHhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCccchhhcc--cCccHHHHhccccCChhHHHHHHH
Q 012813 242 H-DNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEGHQSAMKDVAS 317 (456)
Q Consensus 242 ~-~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~a~~ 317 (456)
. +.+.. . .++|.|+..|+++ ....+..|..+|..|+... ...+.. ..+||.+.+.+.+-.+++.+.|..
T Consensus 125 ~~~~~a~---~--~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~ 197 (986)
T 2iw3_A 125 AVNPVAI---K--ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATA 197 (986)
T ss_dssp HSCGGGH---H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hCCHHHH---H--HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHH
Confidence 1 11111 1 3688899999876 5999999999999998643 233332 478899999999889999999999
Q ss_pred HHHHhccCchhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHH
Q 012813 318 AIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 397 (456)
Q Consensus 318 aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~ 397 (456)
++..+|..-.|+.- ...+|.|++.+.++.-+..++..|..-..-.+.-.....- .+|.|..-|... +...+++++
T Consensus 198 ~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~-~~p~l~r~l~~~-~~~~~r~~~ 272 (986)
T 2iw3_A 198 AMTKATETVDNKDI---ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSI-MVPLLSRGLNER-ETGIKRKSA 272 (986)
T ss_dssp HHHHHGGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHH-HHHHHHHHHTSS-SHHHHHHHH
T ss_pred HHHHHHhcCCCcch---hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHH-HHHHHHhhhccC-cchhheeeE
Confidence 99999876666542 3468999999999877777776666554422211111100 145555555433 477889999
Q ss_pred HHHHHHhcc--ChhhHHHHHHhhccHHHHHHHhhc-CCHHHHHHHHHHHHHHhcch
Q 012813 398 AILHTICLS--DRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLKRTV 450 (456)
Q Consensus 398 ~~L~~l~~~--~~~~~~~~~~~~g~~~~L~~Ll~~-~~~~~k~~A~~~L~~l~~~~ 450 (456)
-++-|+|.- ++.....++ ...+|.|.+.... .+|.+++.|..++..|.+..
T Consensus 273 ~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 273 VIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp HHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 999999984 555545555 5778888887665 58899999999998886653
No 143
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.53 E-value=0.0043 Score=67.13 Aligned_cols=198 Identities=12% Similarity=0.044 Sum_probs=131.6
Q ss_pred chhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccCC
Q 012813 207 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALD 285 (456)
Q Consensus 207 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~aL~~Ls~~~ 285 (456)
+++.|..+|. +++..+++.|+-+|..+-.+..+. .++..|+..+. ..+..+++.++..|.-+..
T Consensus 473 v~e~L~~~L~------dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~-- 537 (963)
T 4ady_A 473 VYEALKEVLY------NDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINY-- 537 (963)
T ss_dssp HHHHHHHHHH------TCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHh------cCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhC--
Confidence 4566777776 334445555655655442232222 23455665554 4467888888888876654
Q ss_pred ccchhhcccCccHHHHhcccc-CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHh
Q 012813 286 SNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAML 361 (456)
Q Consensus 286 ~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L 361 (456)
++...++.+++.|.. .++-++..++.++.--+....|.. +|+.|+..+.++ .++..|+..|..+
T Consensus 538 ------g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI 605 (963)
T 4ady_A 538 ------GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFV 605 (963)
T ss_dssp ------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred ------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhh
Confidence 334567888888875 567777777777765544444433 456677766533 5677788888877
Q ss_pred hCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHH
Q 012813 362 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATG 441 (456)
Q Consensus 362 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~ 441 (456)
....+ ..++.++.++....++.+|..|..+|..++.+++.. .++..|..++++.++.+++.|..
T Consensus 606 ~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~~D~d~~Vrq~Ai~ 669 (963)
T 4ady_A 606 LLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLTKDPVDFVRQAAMI 669 (963)
T ss_dssp TSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHccCCCHHHHHHHHH
Confidence 65432 347778876666556999999999999999877642 44467888888888889998888
Q ss_pred HHHHHh
Q 012813 442 ILERLK 447 (456)
Q Consensus 442 ~L~~l~ 447 (456)
.|.++.
T Consensus 670 ALG~Ig 675 (963)
T 4ady_A 670 ALSMIL 675 (963)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 887764
No 144
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00037 Score=64.50 Aligned_cols=186 Identities=10% Similarity=0.068 Sum_probs=125.0
Q ss_pred HHHh-cCCchhHHHHHHHHHH-HhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc--h
Q 012813 170 LKKM-SATLPDQTEAAKELRL-LTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN--N 245 (456)
Q Consensus 170 v~~L-~~~~~~~~~a~~~L~~-L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~ 245 (456)
-+.+ +++..++.+|+..|.. +..+.+.....-.+....+..|...+.+ +.+..++..|+.+|..++.+-. .
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~-----D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK-----DANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHhccccc
Confidence 4445 4557889999999998 8754332210001111345566666721 4578889999999999874322 1
Q ss_pred hH-HHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhc
Q 012813 246 KK-LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 323 (456)
Q Consensus 246 ~~-~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 323 (456)
-. .... .++|.++..+++....++..+..+|..++..- .....-.-..+++.|+..|++.++.++..++.+|..+.
T Consensus 97 f~~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 97 FSKDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp SCHHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 11 2222 26888999998888999999998888887632 21111001247888999999889999999999999988
Q ss_pred cCchhh-HHH---HhcCcHHHHHHHHcCC--chHHHHHHHHHHhh
Q 012813 324 ITHENK-ARA---VRDGGVSVILKKIMDG--VHVDELLAILAMLS 362 (456)
Q Consensus 324 ~~~~~~-~~~---v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~ 362 (456)
...... ..+ +....+|.|.++|.+. .+++.|..+|..++
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 644321 222 2246899999999876 68888888888876
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.47 E-value=0.0032 Score=59.73 Aligned_cols=180 Identities=9% Similarity=0.045 Sum_probs=128.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-hccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhc-C
Q 012813 259 LMDALRSGTIETRSNAAAALFT-LSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-G 336 (456)
Q Consensus 259 Lv~lL~~~~~~~~~~aa~aL~~-Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~-g 336 (456)
+++-|.+++.+.++.+.--|.. ++.+.+....++..+++..|+++....+...+..+++||.+|-....+...+++. .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 4555666776667776666666 4455677888999999999999999999999999999999999988888777754 5
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCCHH-HHHHHH--------hhC--cHHHHHHHhhh--cCChhHHHHHHHHHH
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTNHR-AVEEIG--------DLG--GVSCMLRIIRE--STCDRNKENCIAILH 401 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~-~~~~i~--------~~g--~i~~Lv~ll~~--~~~~~~~~~A~~~L~ 401 (456)
.|..+..++.+. .+...|+++|..++...+ +...+. +.| -...|+.+|+. +.+..++.+|..++-
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 688888888754 577889999999987532 222221 122 37789999972 235889999999888
Q ss_pred HHhccCh--h---hHHHHHHhhccHHHHHHHhhcC--CHHHHHH
Q 012813 402 TICLSDR--T---KWKAMREEESTHGTISKLAQDG--TARAKRK 438 (456)
Q Consensus 402 ~l~~~~~--~---~~~~~~~~~g~~~~L~~Ll~~~--~~~~k~~ 438 (456)
.+....+ . .....+++.|.-..+...+... ++..+++
T Consensus 283 ~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 283 KTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 7766544 2 2223345556666777766553 4455544
No 146
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.45 E-value=1.8e-05 Score=63.90 Aligned_cols=51 Identities=20% Similarity=0.379 Sum_probs=2.9
Q ss_pred CCCCCCccccccchhhccCcc------------------cCCCCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 69 TVSCPEEFKCPLSKELMRDPV------------------ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 69 ~~~~p~~f~Cpi~~~~m~dPv------------------~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
.+++.+ -.|+||.+.|.+|. .++|||.|.+.||.+|+.. ..+||.||+++.
T Consensus 43 ~wd~~~-d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 43 AWDIVV-DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp EECCCC-----------------------------------------------------------------
T ss_pred eecCCC-CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 445544 47999999998753 2489999999999999987 679999998764
No 147
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=8e-05 Score=55.85 Aligned_cols=52 Identities=15% Similarity=0.313 Sum_probs=42.0
Q ss_pred CCCccccccchhhc--cCcccCCCC-----ccccHHHHHHHHhcC-CCCCCCCcccccCC
Q 012813 72 CPEEFKCPLSKELM--RDPVILASG-----QTFDRPYIQRWLKAG-NRTCPRTQQVLSHT 123 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m--~dPv~l~~g-----~~~~r~~I~~~~~~~-~~~~P~~~~~l~~~ 123 (456)
..++-.|+||.+-+ .+|+++||+ |.|-+.||.+|+... ..+||+|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34467899999776 468889985 999999999999853 36899999988643
No 148
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.37 E-value=0.015 Score=50.15 Aligned_cols=214 Identities=15% Similarity=0.178 Sum_probs=146.5
Q ss_pred hhhhHHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 162 DRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 162 ~~~~i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
+...+..++..|..+ ..+|.+|+..+..++..-++.... .+..|+.+++. ++......+...++..++
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep------l~~kL~vm~~k-----sEaIpltqeIa~a~G~la 98 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP------MLKKLFSLLKK-----SEAIPLTQEIAKAFGQMA 98 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH------HHHHHHHHHHH-----CCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH------HHHHHHHHHhh-----cccCchHHHHHHHHhHHH
Confidence 456777888888766 578999999999999865554332 45567777765 445666667777777766
Q ss_pred cCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHH
Q 012813 241 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 320 (456)
Q Consensus 241 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~ 320 (456)
.-. ..++. +++|.|..-..-|++..+.+...+|..++..... .-.+++.-+..++.+.+..-+-.|+..+.
T Consensus 99 ~i~---Pe~v~--~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~ 169 (253)
T 2db0_A 99 KEK---PELVK--SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIE 169 (253)
T ss_dssp HHC---HHHHH--HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred HhC---HHHHH--hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 443 34444 2677777777789999999999999998863321 11345678888999887655655665555
Q ss_pred HhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHH
Q 012813 321 NLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 397 (456)
Q Consensus 321 ~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~ 397 (456)
.+ .+|..+.+.- .+|.|+.+|.++ -++..|+.+|.+++. ++..|..+. .-++-+. +.|+.++....
T Consensus 170 al---Gen~~~yv~P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~-D~S~lv~~~V~ 238 (253)
T 2db0_A 170 AM---GENSFKYVNP-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELN-DTSSLVNKTVK 238 (253)
T ss_dssp TC---CTTTHHHHGG-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCC-CSCHHHHHHHH
T ss_pred HH---hccCccccCc-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhc-CcHHHHHHHHH
Confidence 55 5555555443 678899999876 467889999999998 466665542 2333343 33477777776
Q ss_pred HHHHHHhcc
Q 012813 398 AILHTICLS 406 (456)
Q Consensus 398 ~~L~~l~~~ 406 (456)
..|..|..-
T Consensus 239 egL~rl~l~ 247 (253)
T 2db0_A 239 EGISRLLLL 247 (253)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 677666543
No 149
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.22 E-value=0.048 Score=54.35 Aligned_cols=233 Identities=15% Similarity=0.148 Sum_probs=142.1
Q ss_pred CCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc---hhHHH-hcCCCCHHHHHHHHhcCCHHH-HHHHHHHHH
Q 012813 205 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN---NKKLV-AETPMVIPLLMDALRSGTIET-RSNAAAALF 279 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~---~~~~i-~~~~~~i~~Lv~lL~~~~~~~-~~~aa~aL~ 279 (456)
..++..++.+|+. ..+.++....+..+..+-..++ .+..+ ...+.....+.....+.+... ...+..++.
T Consensus 76 ~~~~~~~l~lL~~-----~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ 150 (480)
T 1ho8_A 76 GKTLIPLIHLLST-----SDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVS 150 (480)
T ss_dssp STTHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhh-----cChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHH
Confidence 5677888888885 3467888888887777755554 33333 443322222222222333333 344444434
Q ss_pred HhccCCccchhhcccCccH------HHHhccccC-ChhHHHHHHHHHHHhccCchhhHHHHhcC--cHHHHHHHHcC---
Q 012813 280 TLSALDSNKEVIGKSGALK------PLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDG--GVSVILKKIMD--- 347 (456)
Q Consensus 280 ~Ls~~~~~~~~i~~~G~i~------~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~v~~g--~v~~Lv~lL~~--- 347 (456)
-++.... + +..+++ -+...|.+. +.+...-++.+|..|...++.|..+.+.+ .+|.+++.+..
T Consensus 151 ll~~~~~-~----~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~ 225 (480)
T 1ho8_A 151 LLVQNGL-H----NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATD 225 (480)
T ss_dssp HHTSTTT-C----CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred HHhccCC-c----cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhc
Confidence 4432111 1 111222 233444442 34456678999999999999999998653 47777765441
Q ss_pred ------------C----chHHHHHHHHHHhhCCHHHHHHHHhhCcH--HHHHHHhhhcCChhHHHHHHHHHHHHhccCh-
Q 012813 348 ------------G----VHVDELLAILAMLSTNHRAVEEIGDLGGV--SCMLRIIRESTCDRNKENCIAILHTICLSDR- 408 (456)
Q Consensus 348 ------------~----~~~~~a~~~L~~L~~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~- 408 (456)
+ .++.+++-++|.|+.+++..+.+...+.. +.|+.+++...-+++-+-++.+|.|+....+
T Consensus 226 ~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 226 SQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp -------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred cccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence 1 24677999999999999988888877744 6788888876558899999999999998763
Q ss_pred ---hhHHHHHHhhccHHHHHHHhhc--CCHHHHHHHHHHHHHHh
Q 012813 409 ---TKWKAMREEESTHGTISKLAQD--GTARAKRKATGILERLK 447 (456)
Q Consensus 409 ---~~~~~~~~~~g~~~~L~~Ll~~--~~~~~k~~A~~~L~~l~ 447 (456)
....+++...++.+.+..|... +++++.+--..+...|.
T Consensus 306 ~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~ 349 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILE 349 (480)
T ss_dssp THHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHH
Confidence 2223333223455555555443 37777666555555543
No 150
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.81 E-value=0.014 Score=63.74 Aligned_cols=260 Identities=12% Similarity=0.105 Sum_probs=167.9
Q ss_pred hHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCc
Q 012813 165 HFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 243 (456)
Q Consensus 165 ~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~ 243 (456)
.+..+++.++. +......++..|..+...+... .... .+.+..|...+... ..-+.|+.++..++...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~k--------~~~~~a~~~~~~~~~~~ 83 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVP-EHFFGELAKGIKDK--------KTAANAMQAVAHIANQS 83 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCC-HHHHHHHHHHHTSH--------HHHHHHHHHHHHHTCTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccc-hhHHHHHHHHHhcc--------CCHHHHHHHHHHHHHhc
Confidence 45556666653 3455667777777776643221 1222 35666777776632 11288888888887544
Q ss_pred ch----hHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CCccchhhcccCccHHHHhccccC-ChhHHHHHHH
Q 012813 244 NN----KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEG-HQSAMKDVAS 317 (456)
Q Consensus 244 ~~----~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~-~~~~~~~i~~~G~i~~Lv~lL~~~-~~~~~~~a~~ 317 (456)
.. -..++ +.+|.++..+.+....+|.+|..++..+.. .+.+.. ..++|.|+..|.+. .=+.+..|+.
T Consensus 84 ~~~~~~e~~~~---~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~ 156 (986)
T 2iw3_A 84 NLSPSVEPYIV---QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILA 156 (986)
T ss_dssp TCCTTTHHHHH---TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCCcccchH---HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHH
Confidence 31 22222 257777777777778899988888777764 222222 45689999988765 4578899999
Q ss_pred HHHHhccCchhhHHHHh--cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHH
Q 012813 318 AIFNLCITHENKARAVR--DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK 393 (456)
Q Consensus 318 aL~~L~~~~~~~~~~v~--~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 393 (456)
+|..|+.... ..+.. ...||.+-+.+-+- +++..|..++..+|..-.++.. ...||.|++.+.+. ...
T Consensus 157 ~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p---~~~ 228 (986)
T 2iw3_A 157 AFSAMVDAAK--DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADP---TEV 228 (986)
T ss_dssp HHHHHHHHSH--HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCT---THH
T ss_pred HHHHHHHHhH--HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcCh---hhh
Confidence 9999986542 22322 25788888887764 7888888999888863222211 14689999999853 334
Q ss_pred HHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhcc
Q 012813 394 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNLT 453 (456)
Q Consensus 394 ~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~~~ 453 (456)
..++..|..-+.-..-.. ..+ +-.+|.|.+=+...+..+||+++-+..||++.....
T Consensus 229 ~~~~~~l~~~tfv~~v~~-~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~ 285 (986)
T 2iw3_A 229 PETVHLLGATTFVAEVTP-ATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDP 285 (986)
T ss_dssp HHHHHHHTTCCCCSCCCH-HHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhhcCeeEeeecc-hhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCH
Confidence 556777776655443221 122 244566666666668889999999999999875543
No 151
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.79 E-value=0.0055 Score=59.39 Aligned_cols=242 Identities=8% Similarity=0.042 Sum_probs=136.9
Q ss_pred HHHHHHHhcCC-chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc
Q 012813 166 FLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 244 (456)
Q Consensus 166 i~~Lv~~L~~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 244 (456)
+...++.+.+. ...++-..-.+..+++..++. |. ++..|..=++ +.++-++-.|+++|.++...+
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---iL----v~Nsl~kDl~------~~N~~iR~lALRtL~~I~~~~- 135 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---II----VTSSLTKDMT------GKEDSYRGPAVRALCQITDST- 135 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---GG----GHHHHHHHHH------SSCHHHHHHHHHHHHHHCCTT-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---HH----HHHHHHhhcC------CCcHhHHHHHHHHHhcCCCHH-
Confidence 34455666543 445555555555666532111 10 2233444444 567899999999999986443
Q ss_pred hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhcc
Q 012813 245 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 324 (456)
Q Consensus 245 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 324 (456)
+++ ...+.+...|.+.++-+|+.|+-+...|..... .. + .+.++.+-+++.+.++.+..+|+.+|+.++.
T Consensus 136 ----m~~--~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~-v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 136 ----MLQ--AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DV-V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp ----THH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HH-H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred ----HHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HH-H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 222 245667788889999999999999888875432 22 2 2688999999999999999999999999986
Q ss_pred CchhhHHHHhcCcHHHHHHHHcCCch--HHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHH
Q 012813 325 THENKARAVRDGGVSVILKKIMDGVH--VDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 401 (456)
Q Consensus 325 ~~~~~~~~v~~g~v~~Lv~lL~~~~~--~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~ 401 (456)
.+. . ++..|+..+..+.. .-.-+.+|..+... ++.- .-.....++.|..++++. ++.+.-.|++++.
T Consensus 206 ~d~--~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~-~~~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 206 NDR--L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED-GSRDSPLFDFIESCLRNK-HEMVVYEAASAIV 275 (355)
T ss_dssp TCH--H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------CCCCCS-SHHHHHHHHHHHT
T ss_pred hch--H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 542 1 34455555554321 22223344433332 1110 001123355566667755 4788888888888
Q ss_pred HHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 402 TICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 402 ~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
.+...+.. .+ ..++..|..++.+.++.+|--|...|..+.
T Consensus 276 ~l~~~~~~----~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 276 NLPGCSAK----EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp C-----------------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred hccCCCHH----HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 87653321 22 245567777777777778877766665554
No 152
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.43 E-value=0.12 Score=49.93 Aligned_cols=205 Identities=12% Similarity=0.066 Sum_probs=128.7
Q ss_pred hhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCcc
Q 012813 208 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN 287 (456)
Q Consensus 208 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~ 287 (456)
...++.++. +.|.+.+.-..-.+.+++...+.. +. ++..|.+=++++++-.|-.|.++|+++...+-
T Consensus 70 f~~v~kl~~------s~d~~lKrLvYLyl~~~~~~~~e~--iL----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m- 136 (355)
T 3tjz_B 70 FFAMTKLFQ------SNDPTLRRMCYLTIKEMSCIAEDV--II----VTSSLTKDMTGKEDSYRGPAVRALCQITDSTM- 136 (355)
T ss_dssp HHHHHGGGG------CCCHHHHHHHHHHHHHHTTTSSCG--GG----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-
T ss_pred HHHHHHHhc------CCCHHHHHHHHHHHHHhCCCHHHH--HH----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-
Confidence 344566777 668888888888888887764322 21 46678888899999999999999999965331
Q ss_pred chhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH
Q 012813 288 KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH 365 (456)
Q Consensus 288 ~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~ 365 (456)
. ..+.+.+.+.|.+.++-+++.|+-+.+.|...... +++ +.+..+-+++.+. .++.+|+.+|..++.+.
T Consensus 137 ----~-~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 137 ----L-QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp ----H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred ----H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 1 23456677888889999999999999999865533 333 5788888888865 56788999999998753
Q ss_pred HHHHHHHhhCcHHHHHHHhhhcC--ChhHHHHHHHHHHHHhccC-hhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHH
Q 012813 366 RAVEEIGDLGGVSCMLRIIREST--CDRNKENCIAILHTICLSD-RTKWKAMREEESTHGTISKLAQDGTARAKRKATGI 442 (456)
Q Consensus 366 ~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~~A~~~L~~l~~~~-~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~ 442 (456)
. . ++..|+..+..+. ++..+-.-++.+..++..+ ++. ....++.|...+++.++.+.-.|+..
T Consensus 208 ~--~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~------~~~~~~~l~~~L~~~~~aVvyEa~k~ 273 (355)
T 3tjz_B 208 R--L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR------DSPLFDFIESCLRNKHEMVVYEAASA 273 (355)
T ss_dssp H--H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------------CCCCCSSHHHHHHHHHH
T ss_pred h--H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh------HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 1 1 2344454443321 3555554444444444433 111 12455666666777777777777766
Q ss_pred HHHHhc
Q 012813 443 LERLKR 448 (456)
Q Consensus 443 L~~l~~ 448 (456)
+-.+..
T Consensus 274 I~~l~~ 279 (355)
T 3tjz_B 274 IVNLPG 279 (355)
T ss_dssp HTC---
T ss_pred HHhccC
Confidence 655543
No 153
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.16 E-value=0.24 Score=42.78 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=58.4
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhcccc-CChhHHHHHHHHHHHhccCchhhHH
Q 012813 254 MVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKAR 331 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~ 331 (456)
.++..++++|.+.-+.++++|...+.+++... +.-. ..+..|+-+++. ....+...-+++++.++.... .
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e-----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---E 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH-----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---H
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---H
Confidence 36777888888888999999999999887643 2211 234555556543 455666666777777654221 1
Q ss_pred HHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC
Q 012813 332 AVRDGGVSVILKKIMDG--VHVDELLAILAMLST 363 (456)
Q Consensus 332 ~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~ 363 (456)
+++ +.||.|..-..-+ ..+-....+|..++.
T Consensus 104 ~v~-~vVp~lfanyrigd~kikIn~~yaLeeIar 136 (253)
T 2db0_A 104 LVK-SMIPVLFANYRIGDEKTKINVSYALEEIAK 136 (253)
T ss_dssp HHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHH
T ss_pred HHH-hhHHHHHHHHhcCCccceecHHHHHHHHHH
Confidence 111 2445554444422 334444445544443
No 154
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.08 E-value=0.24 Score=53.67 Aligned_cols=168 Identities=12% Similarity=0.088 Sum_probs=106.6
Q ss_pred chhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccCC
Q 012813 207 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALD 285 (456)
Q Consensus 207 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~aL~~Ls~~~ 285 (456)
++..|+..+.+ +.+..++..++..|..+..+.+ ..++.+++.|.. .++-+|..++.++.--....
T Consensus 508 ai~~LL~~~~e-----~~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 508 AIHDMFTYSQE-----TQHGNITRGLAVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhc-----cCcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC
Confidence 34455555432 2345666667777765544432 467778888875 46777777766664332222
Q ss_pred ccchhhcccCccHHHHhcccc-CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcC-C--chHHHHHHHHHHh
Q 012813 286 SNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD-G--VHVDELLAILAML 361 (456)
Q Consensus 286 ~~~~~i~~~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~-~--~~~~~a~~~L~~L 361 (456)
.| ..+|..|+..+.+ .+..++..|+.+|+.+....+ ..++.++++|.. . .++..+..+|..+
T Consensus 574 Gn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli 639 (963)
T 4ady_A 574 GN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIA 639 (963)
T ss_dssp CC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHH
T ss_pred CC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 22 2345666666544 467889999999998765543 356777776653 2 6788888899888
Q ss_pred hCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChh
Q 012813 362 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 409 (456)
Q Consensus 362 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~ 409 (456)
+.+....+ ++..|..++. +.++.++..|+-+|..+.....+
T Consensus 640 ~aGn~~~~------aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 640 CAGKGLQS------AIDVLDPLTK-DPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp TSSSCCHH------HHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCT
T ss_pred ccCCCcHH------HHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCcc
Confidence 76432211 2445555555 44589999999999999876543
No 155
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.06 E-value=0.13 Score=56.79 Aligned_cols=219 Identities=13% Similarity=0.077 Sum_probs=127.3
Q ss_pred CChhhHHHHHHHHHccccCcchhHHHhc----CCCCHHH----HHHHHhcC---CHHHHHHHHHHHHHhccCCccchhhc
Q 012813 224 INPNLQEDVITTLLNLSIHDNNKKLVAE----TPMVIPL----LMDALRSG---TIETRSNAAAALFTLSALDSNKEVIG 292 (456)
Q Consensus 224 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~----~~~~i~~----Lv~lL~~~---~~~~~~~aa~aL~~Ls~~~~~~~~i~ 292 (456)
.+...++.|+.++..++.+......-.. ...+.+. ++..|.++ ++-+|..++++|..++..- ....
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~-- 493 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ-- 493 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--
Confidence 3567888899988888653211110000 0023332 23345666 7899999999999988632 1111
Q ss_pred ccCccHHHHhccccCChhHHHHHHHHHHHhccCch---------hhHHHHh--cCcHHHHHHHHcCC-------chHHHH
Q 012813 293 KSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE---------NKARAVR--DGGVSVILKKIMDG-------VHVDEL 354 (456)
Q Consensus 293 ~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~---------~~~~~v~--~g~v~~Lv~lL~~~-------~~~~~a 354 (456)
-..+++.+++.|.+.++.++..|+.+|.+++...+ .+..+.. ...++.|+.++... ...+.+
T Consensus 494 l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l 573 (960)
T 1wa5_C 494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL 573 (960)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHH
Confidence 23567888888888889999999999999987421 2333322 24556666666653 134567
Q ss_pred HHHHHHhhCCH-HHHHHHHhhCcHHHHHHHhhh----cCChhHHHHHHHHHHHHhcc-ChhhHHHHHHhhccHHHHHHHh
Q 012813 355 LAILAMLSTNH-RAVEEIGDLGGVSCMLRIIRE----STCDRNKENCIAILHTICLS-DRTKWKAMREEESTHGTISKLA 428 (456)
Q Consensus 355 ~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~~g~~~~L~~Ll 428 (456)
+.+|..++..- +.-..+.. ..++.|+..+.. .+++..+..++.+|..++.. .++....+. ...++.+..++
T Consensus 574 ~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~iL 650 (960)
T 1wa5_C 574 MRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHH
Confidence 77777665421 10000000 123444444432 33456666788888888776 333333332 36778888888
Q ss_pred hcCCHHHHHHHHHHHHHHhc
Q 012813 429 QDGTARAKRKATGILERLKR 448 (456)
Q Consensus 429 ~~~~~~~k~~A~~~L~~l~~ 448 (456)
+.......+.+..++..+-+
T Consensus 651 ~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHHH
Confidence 77655566666666665543
No 156
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.83 E-value=0.025 Score=57.13 Aligned_cols=246 Identities=12% Similarity=0.090 Sum_probs=155.9
Q ss_pred hHHHHHHHh-cCCchhHHHHHHHHHHHhhcCchh--hhhhhccCCchhhhhhcc--ccccc--cCCCChhhHHHHHHHHH
Q 012813 165 HFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSF--RALFGESHDAIPQLLSPL--SESKC--ENGINPNLQEDVITTLL 237 (456)
Q Consensus 165 ~i~~Lv~~L-~~~~~~~~~a~~~L~~L~~~~~~~--r~~i~~~~g~i~~Lv~lL--~~~~~--~~~~~~~~~~~a~~~L~ 237 (456)
..+.|+..| +...+.|--|+-.|+.+.+..... |..-.. .+..-.|+.+| ....+ ++..-..++|.++.+|.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N-~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVD-SKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCC-TTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceecccc-HHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 455666666 455788888999999888754321 110111 12333333332 22221 11223578898888888
Q ss_pred ccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhc-ccCccHHHHhccccCChhHHHHHH
Q 012813 238 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIG-KSGALKPLIDLLDEGHQSAMKDVA 316 (456)
Q Consensus 238 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~a~ 316 (456)
.+ .+-+.. ..++..++..+..+..++|..+.-.|.++ +..+. -.++++.++..|.+.+.+++..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Confidence 77 443322 12444455555677899999999999998 22222 257888999999999999999999
Q ss_pred HHHHHhccCchhhHHHHhcCcHHHHHHHHcC--C--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhH
Q 012813 317 SAIFNLCITHENKARAVRDGGVSVILKKIMD--G--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRN 392 (456)
Q Consensus 317 ~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~--~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 392 (456)
.+|.-++ .++.- ..++..+.+.|.+ + ..+...+.+|+.|++.+.. .-.....+|.|.-++++.- ..+
T Consensus 321 etLiPIA-~p~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtI-TSV 391 (800)
T 3oc3_A 321 ELLCHFP-ITDSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPV-PEV 391 (800)
T ss_dssp HHHTTSC-CSSTH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSS-HHH
T ss_pred HHhhhhc-chhhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCc-HHH
Confidence 9999998 11111 1245556666654 2 4577788899999887631 1112356888999999764 889
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012813 393 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 444 (456)
Q Consensus 393 ~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~ 444 (456)
|..++.+|..+. .. .+++ -.++.++-..++.+++.+..+.+
T Consensus 392 R~AVL~TL~tfL--~~----~~LR-----LIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLS--EE----SIDF-----LVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCC--CH----HHHH-----HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hh----hHHH-----HHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999998776 11 1211 24445666678888888777764
No 157
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.74 E-value=0.0088 Score=43.74 Aligned_cols=47 Identities=15% Similarity=0.425 Sum_probs=36.9
Q ss_pred cccccchhhccCcccC-CCCccccHHHHHHHHhcC-CCCCCCCcccccC
Q 012813 76 FKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAG-NRTCPRTQQVLSH 122 (456)
Q Consensus 76 f~Cpi~~~~m~dPv~l-~~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~~ 122 (456)
-.|+||.+++..=+.- .|||.|-..||.+||... ..+||.|+++...
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4699999888643333 489999999999999752 3789999988653
No 158
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.55 E-value=0.0073 Score=46.24 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=37.8
Q ss_pred ccccchhhccCcc-cCCCCccccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 77 KCPLSKELMRDPV-ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 77 ~Cpi~~~~m~dPv-~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
.||+|.-+...=. ++||+|.||-.|+..|..+++.+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4777776665533 789999999999999998778899999988654
No 159
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.54 E-value=0.26 Score=44.80 Aligned_cols=234 Identities=11% Similarity=0.144 Sum_probs=142.1
Q ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhh-------ccccccccCCCChhhHHHHHHHHH
Q 012813 165 HFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS-------PLSESKCENGINPNLQEDVITTLL 237 (456)
Q Consensus 165 ~i~~Lv~~L~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~-------lL~~~~~~~~~~~~~~~~a~~~L~ 237 (456)
.+..++..|.. ++.++.|+..|..--...++.--.+-.+.|.+..|+. .++..... .....-..+|+..|.
T Consensus 4 ~i~qli~~L~~-p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt-~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSS-PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLT-AHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSS-TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccC-HHHHhHHHHHHHHHH
Confidence 34455555543 4567777666554222222323333343566665532 12211000 001234578888889
Q ss_pred ccccCcchhHHHhcCCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhccCCcc--chhhcccCccHHHHhccccCChh
Q 012813 238 NLSIHDNNKKLVAETPMVIPLLMDALRSGT-----IETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQS 310 (456)
Q Consensus 238 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~aa~aL~~Ls~~~~~--~~~i~~~G~i~~Lv~lL~~~~~~ 310 (456)
.++.+++.|..+..+. ..-.|-.+|...+ .-.|-.+.+++..|...++. -..+.+.++||..++.++.++.-
T Consensus 82 cvAshpetr~~Fl~a~-iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gsel 160 (268)
T 2fv2_A 82 CVASHPETRSAFLAAH-IPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSEL 160 (268)
T ss_dssp HHHHCTTTHHHHHHTT-GGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHcCcchhhHHHHcc-chHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHH
Confidence 9999999999999875 3334456665443 35788999999999976543 22334678999999999999998
Q ss_pred HHHHHHHHHHHhccCchhhHHHHhc--------CcHHHHHHHHc-CC--chHHHHHHHHHHhhCCHHHHHHHHhhC--cH
Q 012813 311 AMKDVASAIFNLCITHENKARAVRD--------GGVSVILKKIM-DG--VHVDELLAILAMLSTNHRAVEEIGDLG--GV 377 (456)
Q Consensus 311 ~~~~a~~aL~~L~~~~~~~~~~v~~--------g~v~~Lv~lL~-~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g--~i 377 (456)
.+.-|.-.+..+-.++.+-..+... .++..++.-+. ++ .+..+.+.+-..|+.++..|+++...= .+
T Consensus 161 SKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~L 240 (268)
T 2fv2_A 161 SKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQL 240 (268)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHh
Confidence 8888988888887777654444321 12333333333 23 677889999999999999888886541 00
Q ss_pred --HHHHHHhhhcCChhHHHHHHHHHHHH
Q 012813 378 --SCMLRIIRESTCDRNKENCIAILHTI 403 (456)
Q Consensus 378 --~~Lv~ll~~~~~~~~~~~A~~~L~~l 403 (456)
..+-.+++ + ++.++..-...+.|+
T Consensus 241 rd~tf~~~l~-~-D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 241 KDTTFAQVLK-D-DTTTKRWLAQLVKNL 266 (268)
T ss_dssp TSSTTHHHHT-S-CHHHHHHHHHHHHHS
T ss_pred hChHHHHHHh-c-CHHHHHHHHHHHHhc
Confidence 11223333 2 366666555555554
No 160
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.50 E-value=0.015 Score=40.69 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=37.9
Q ss_pred ccccccchhhccCcccCCCC--c---cccHHHHHHHHhc-CCCCCCCCccccc
Q 012813 75 EFKCPLSKELMRDPVILASG--Q---TFDRPYIQRWLKA-GNRTCPRTQQVLS 121 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g--~---~~~r~~I~~~~~~-~~~~~P~~~~~l~ 121 (456)
.-.|.|+.+-..+|.+.||. + .|=+.++++|+.. ++.+||+++.++.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45699998877888888963 2 5799999999974 5678999998765
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.37 E-value=0.32 Score=44.21 Aligned_cols=139 Identities=11% Similarity=0.101 Sum_probs=98.7
Q ss_pred ChhHHHHHHHHHHHhccCchhhHH-HH-hcCcHHHHHHHHcC------C--------chHHHHHHHHHHhhCCHHHHHHH
Q 012813 308 HQSAMKDVASAIFNLCITHENKAR-AV-RDGGVSVILKKIMD------G--------VHVDELLAILAMLSTNHRAVEEI 371 (456)
Q Consensus 308 ~~~~~~~a~~aL~~L~~~~~~~~~-~v-~~g~v~~Lv~lL~~------~--------~~~~~a~~~L~~L~~~~~~~~~i 371 (456)
+++.++.|+.-|..=-..-++-.- +- ..|.+..|++-+-+ + .-.-.|+.+|..+|++|+.|..|
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 444566666555442222222222 23 34888887665532 1 23466889999999999999999
Q ss_pred HhhCcHHHHHHHhhhcCC----hhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012813 372 GDLGGVSCMLRIIRESTC----DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 446 (456)
Q Consensus 372 ~~~g~i~~Lv~ll~~~~~----~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l 446 (456)
.+++..--|.-+|...+. +-.|-.+++++..|.+.+....-..+-+.++++...++++.|++-.|.-|..+++.+
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999865556666665321 456888999999999877665556666678999999999999999999999998865
No 162
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.28 Score=45.49 Aligned_cols=186 Identities=10% Similarity=0.124 Sum_probs=116.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCc---cchh-hccc-CccHHHHhccccCChhHHHHHHHHHHHhccCch---
Q 012813 256 IPLLMDALRSGTIETRSNAAAALFTLSALDS---NKEV-IGKS-GALKPLIDLLDEGHQSAMKDVASAIFNLCITHE--- 327 (456)
Q Consensus 256 i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~---~~~~-i~~~-G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--- 327 (456)
+| |-+-|.+.+...|..|...|..+..... .... +... ..++.+-+.+.+.+..+...++.+|..++....
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 55 6678889999999999998877654221 1111 1112 345566677888899999999999988875321
Q ss_pred -hhHH--HHhcCcHHHHHHH-HcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHH
Q 012813 328 -NKAR--AVRDGGVSVILKK-IMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 401 (456)
Q Consensus 328 -~~~~--~v~~g~v~~Lv~l-L~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~ 401 (456)
.+.. ..-...+|.|++- +.+. .+++.++.+|..++........ .++.++..+.+. +++++..++..|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~K-npkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKK-LPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCS-CHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhcc-CHHHHHHHHHHHH
Confidence 1111 2223567888876 5655 4677777777766532110011 123444555544 5999999998888
Q ss_pred HHhccC-hh--hHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 402 TICLSD-RT--KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 402 ~l~~~~-~~--~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
.+.... .. ..+..+ ..+++.+.+++.+.++.+|..|..++-.+-++-
T Consensus 165 ~~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 775432 11 112222 245667888899999999999999998776553
No 163
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.85 E-value=0.0044 Score=58.64 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=37.7
Q ss_pred ccccccchhhccC----ccc----CCCCccccHHHHHHHHhcC-C---------CCCCCCcccccC
Q 012813 75 EFKCPLSKELMRD----PVI----LASGQTFDRPYIQRWLKAG-N---------RTCPRTQQVLSH 122 (456)
Q Consensus 75 ~f~Cpi~~~~m~d----Pv~----l~~g~~~~r~~I~~~~~~~-~---------~~~P~~~~~l~~ 122 (456)
..-|+||...+.+ |.. .+|||.|-..||.+|+... + .+||+|+++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3469999999887 533 3589999999999999741 1 469999999763
No 164
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.30 E-value=0.64 Score=50.99 Aligned_cols=175 Identities=8% Similarity=-0.011 Sum_probs=104.4
Q ss_pred hcCCHHHHHHHHHHHHHhccCCcc--chhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHH
Q 012813 264 RSGTIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVI 341 (456)
Q Consensus 264 ~~~~~~~~~~aa~aL~~Ls~~~~~--~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~L 341 (456)
.+.+...++.++.++..++..-.. ...+. .+++.|..+. .+++.++..++++|+.++..-....... ..+++.|
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~--~l~~~l~~l~-~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~l 534 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVP--GLIGLIPRIS-ISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPLV 534 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH--HHHHHGGGSC-CCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHH--HHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHH
Confidence 344678899999999998864221 11111 2333333333 2577899999999999886432222222 2678899
Q ss_pred HHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhh--CcHHHHHHHhhhcC-ChhHHHHHHHHHHHHhccCh-hhHHHHHHh
Q 012813 342 LKKIMDGVHVDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIREST-CDRNKENCIAILHTICLSDR-TKWKAMREE 417 (456)
Q Consensus 342 v~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~--g~i~~Lv~ll~~~~-~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~ 417 (456)
+..|.++.++..|+.+|..+|.. .+..+... ..+..|..++..+. +...+..+..++..++...+ +.....+
T Consensus 535 ~~~l~~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-- 610 (963)
T 2x19_B 535 LHALGNPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-- 610 (963)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHhCCchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH--
Confidence 98888778999999999999942 22222211 23444555665422 36788888999998876543 3333333
Q ss_pred hccHHHHHHHh----hcC-CHHHHHHHHHHHHHH
Q 012813 418 ESTHGTISKLA----QDG-TARAKRKATGILERL 446 (456)
Q Consensus 418 ~g~~~~L~~Ll----~~~-~~~~k~~A~~~L~~l 446 (456)
...++++...+ +.. ++..+......+..+
T Consensus 611 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 611 HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 24454444433 233 555665544444444
No 165
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.87 E-value=0.044 Score=52.64 Aligned_cols=62 Identities=18% Similarity=0.358 Sum_probs=50.4
Q ss_pred ccccccchhhccCccc-CCCCcc--ccHHHHHHHHhc-CCCCCCCCcccccCCCCcccHHHHHHHH
Q 012813 75 EFKCPLSKELMRDPVI-LASGQT--FDRPYIQRWLKA-GNRTCPRTQQVLSHTILTPNHLIREMIS 136 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~-l~~g~~--~~r~~I~~~~~~-~~~~~P~~~~~l~~~~l~~n~~lk~~i~ 136 (456)
.+.|||++..|+.|+- ..|.|. ||...+...... +.-.||+|+.++...+|..+.-+.+.+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 4899999999999995 558886 888888776543 3457999999999999998887776654
No 166
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.67 E-value=0.38 Score=45.34 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=99.6
Q ss_pred hhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHH----HHHh-cCCHHHHHHHHHHHHHhccCCccchhhccc--CccH
Q 012813 226 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLM----DALR-SGTIETRSNAAAALFTLSALDSNKEVIGKS--GALK 298 (456)
Q Consensus 226 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv----~lL~-~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~--G~i~ 298 (456)
.+.+--++..++-+..++.....+....+. ..++ ..+. .+++..+..+++++.|+-.....+..+... .+++
T Consensus 116 ~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~-~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~ 194 (304)
T 3ebb_A 116 EDIVFPALDILRLSIKHPSVNENFCNEKEG-AQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMS 194 (304)
T ss_dssp TTTCHHHHHHHHHHTTSHHHHHHHHSTTTH-HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHH
T ss_pred HHhHHHHHHHHHHHHcCccHHHHhhccccc-hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH
Confidence 455556666666655555444444433221 2233 2222 234667888999999998887777666542 4566
Q ss_pred HHHhccccCChhHHHHHHHHHHHhccCchhhHHHH-hcCcHHHHHHHHcC---CchHHHHHHHHHHhhCCHHHHHHHHhh
Q 012813 299 PLIDLLDEGHQSAMKDVASAIFNLCITHENKARAV-RDGGVSVILKKIMD---GVHVDELLAILAMLSTNHRAVEEIGDL 374 (456)
Q Consensus 299 ~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v-~~g~v~~Lv~lL~~---~~~~~~a~~~L~~L~~~~~~~~~i~~~ 374 (456)
.+...+.+.+..++..++.+++|++...-.....- ...++..+..++.. .+....++.+|.+|...+.....+.+.
T Consensus 195 ~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~ 274 (304)
T 3ebb_A 195 HAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKS 274 (304)
T ss_dssp HHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHH
Confidence 66666666788899999999999987532111110 11133444444442 266777889999998764434444443
Q ss_pred -CcHHHHHHHhhhcCChhHHHHHHHHH
Q 012813 375 -GGVSCMLRIIRESTCDRNKENCIAIL 400 (456)
Q Consensus 375 -g~i~~Lv~ll~~~~~~~~~~~A~~~L 400 (456)
|+-..+-++...+.++++.+.|..+|
T Consensus 275 l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 275 LGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp TTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 43333334444334466666554444
No 167
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.14 E-value=0.8 Score=42.29 Aligned_cols=183 Identities=15% Similarity=0.140 Sum_probs=105.8
Q ss_pred HHHHh-cCCchhHHHHHHHHHHHhhcCchh--hhh-hhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc
Q 012813 169 LLKKM-SATLPDQTEAAKELRLLTKRMPSF--RAL-FGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 244 (456)
Q Consensus 169 Lv~~L-~~~~~~~~~a~~~L~~L~~~~~~~--r~~-i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 244 (456)
+-+.| +++...|.+|+..|..+....... ... +......++.+-..+. +.+..++..++.+|..+...-.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~------DsN~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT------DSNVVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT------CSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHHHHHhh
Confidence 44566 456889999999988776533211 111 1110122334444555 5578889998888877643211
Q ss_pred ----hhHHH-hcCCCCHHHHHHH-HhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHH
Q 012813 245 ----NKKLV-AETPMVIPLLMDA-LRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 318 (456)
Q Consensus 245 ----~~~~i-~~~~~~i~~Lv~l-L~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~a 318 (456)
.+... .....++|.|+.- |.++...++..+..++..++....... -+++.++..+.+.++.++..++..
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~ 162 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANC 162 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHH
Confidence 11111 1111356767653 666778888888888877764332212 235677778888899999999998
Q ss_pred HHHhccCchhh----HHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC
Q 012813 319 IFNLCITHENK----ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST 363 (456)
Q Consensus 319 L~~L~~~~~~~----~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~ 363 (456)
|..+......+ ...+ ..+++.+..++.+. .+++.|..++..+-.
T Consensus 163 l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 88775431110 1111 12344566666654 677878877777654
No 168
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.94 E-value=2.1 Score=47.05 Aligned_cols=175 Identities=6% Similarity=0.015 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHHhccCCcc--chhhcccCccHHHHhccc-cCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHH
Q 012813 266 GTIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVIL 342 (456)
Q Consensus 266 ~~~~~~~~aa~aL~~Ls~~~~~--~~~i~~~G~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv 342 (456)
.+...++.+..++..++..-.. ...+ ...++.+..+.. +.++.++..++++|+.++..-....... ..+++.|+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l--~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~l~ 552 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQI--PRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINLLV 552 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHH--HHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHH--HHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHH
Confidence 4667888998888888753221 1111 113333333332 2478899999999999885422111111 13566777
Q ss_pred HHHcCCchHHHHHHHHHHhhCCHHHHHHHHhh--CcHHHHHHHhhhcC-ChhHHHHHHHHHHHHhccCh-hhHHHHHHhh
Q 012813 343 KKIMDGVHVDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIREST-CDRNKENCIAILHTICLSDR-TKWKAMREEE 418 (456)
Q Consensus 343 ~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~--g~i~~Lv~ll~~~~-~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~~ 418 (456)
..| ++.++..|+.+|..+|. +.+..+... ..+..|..++..+. +...+..+..++..++...+ +.....+.
T Consensus 553 ~~l-~~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-- 627 (971)
T 2x1g_F 553 RGL-NSSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-- 627 (971)
T ss_dssp HHH-HSSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH--
T ss_pred HHh-ChHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH--
Confidence 777 37899999999999994 233334322 35666677777532 36788889999998876432 22223331
Q ss_pred ccHHHHHH----HhhcC--CHHHHHHHHHHHHHHhc
Q 012813 419 STHGTISK----LAQDG--TARAKRKATGILERLKR 448 (456)
Q Consensus 419 g~~~~L~~----Ll~~~--~~~~k~~A~~~L~~l~~ 448 (456)
..++++.. +++.. ++..+......|..+++
T Consensus 628 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 628 IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 33343333 33333 44455666666666653
No 169
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.68 E-value=2.1 Score=40.26 Aligned_cols=132 Identities=11% Similarity=-0.004 Sum_probs=88.8
Q ss_pred ChhHHHHHHHHHHHhccCchhhHHHHhc--CcHHHHHHHHcCC--chHHHHHHHHHHhhCC------HHHHHHHHhhCcH
Q 012813 308 HQSAMKDVASAIFNLCITHENKARAVRD--GGVSVILKKIMDG--VHVDELLAILAMLSTN------HRAVEEIGDLGGV 377 (456)
Q Consensus 308 ~~~~~~~a~~aL~~L~~~~~~~~~~v~~--g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~------~~~~~~i~~~g~i 377 (456)
.+..+-.+++++.|+-.+..++..+... .+++.+...+.++ .++..+..++.|++.. .+.+.. .+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll 235 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CL 235 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HH
Confidence 4556778999999999999888877753 2333333333332 5677788888898863 111111 34
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 012813 378 SCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILER 445 (456)
Q Consensus 378 ~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~-~~~~~k~~A~~~L~~ 445 (456)
..+..++....+.+..-.++.+|.+|...+. ..+++.+..++...+.++... ..+++.+.|..+|..
T Consensus 236 ~~l~~il~~~~d~EalyR~LvALGtL~~~~~-~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 236 SLISTILEVVQDLEATFRLLVALGTLISDDS-NAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHhCCh-hHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 4455666555567888889999999987764 356666666777777777765 466788888887753
No 170
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=92.45 E-value=0.063 Score=40.73 Aligned_cols=58 Identities=21% Similarity=0.478 Sum_probs=44.5
Q ss_pred cCCCCCC-ccccccchhhccCcccCCCC------ccccHHHHHHHHhcCCCCCCCCcccccCCCCc
Q 012813 68 ETVSCPE-EFKCPLSKELMRDPVILASG------QTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 126 (456)
Q Consensus 68 ~~~~~p~-~f~Cpi~~~~m~dPv~l~~g------~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~ 126 (456)
+.+..|+ +++||||.++-..=|.+.++ .-||..++.+-... +..-|.+|+|++..+++
T Consensus 19 ~~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~-~~~HPLSREpit~sMIv 83 (102)
T 2kkx_A 19 ERLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGE-GLPHPLTREPITASIIV 83 (102)
T ss_dssp TTTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHH-TCCCTTTCCCCCTTTEE
T ss_pred hhccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhc-CCCCCCccCCCCHhhEe
Confidence 4445544 57899999998888877642 14899999999887 45679999999887654
No 171
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.20 E-value=0.12 Score=49.40 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=50.3
Q ss_pred ccccccchhhccCccc-CCCCcc--ccHHHHHHHHhc-CCCCCCCCcccccCCCCcccHHHHHHHH
Q 012813 75 EFKCPLSKELMRDPVI-LASGQT--FDRPYIQRWLKA-GNRTCPRTQQVLSHTILTPNHLIREMIS 136 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~-l~~g~~--~~r~~I~~~~~~-~~~~~P~~~~~l~~~~l~~n~~lk~~i~ 136 (456)
.+.|||++..|+.|+- ..|.|. ||...+...... +.-.||+|++++...+|..+.-+.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 5789999999999995 558876 988888776653 3457999999999999998877776654
No 172
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.02 E-value=2.6 Score=46.20 Aligned_cols=172 Identities=9% Similarity=0.040 Sum_probs=97.1
Q ss_pred hHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHh------cCCHHHHHHHHHHHHHhccCCccchh-hc---c-cCc
Q 012813 228 LQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR------SGTIETRSNAAAALFTLSALDSNKEV-IG---K-SGA 296 (456)
Q Consensus 228 ~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~------~~~~~~~~~aa~aL~~Ls~~~~~~~~-i~---~-~G~ 296 (456)
.+..|...|..++..-. ..+.. .+++.+...+. +.+...+++|..++..++.....+.. +. . ...
T Consensus 377 ~R~aa~~~L~~l~~~~~--~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNE--VLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp HHHHHHHHHHHHHHHCH--HHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred cHHHHHHHHHHHHHHcc--hhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 45556666666654432 22221 13444445555 45678899999999998754221111 10 0 022
Q ss_pred cHHH----HhccccC---ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH--
Q 012813 297 LKPL----IDLLDEG---HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH-- 365 (456)
Q Consensus 297 i~~L----v~lL~~~---~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~-- 365 (456)
.+.+ +..|.+. ++-++..|+++|+.++..-. ... -..+++.++..|.++ .++..|+.+|.+++...
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~ 529 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRES 529 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc
Confidence 2333 3334555 78899999999999987521 111 224677888888765 47899999999998742
Q ss_pred ------H-HHHHHHhh--CcHHHHHHHhhhcC--Chh--HHHHHHHHHHHHhcc
Q 012813 366 ------R-AVEEIGDL--GGVSCMLRIIREST--CDR--NKENCIAILHTICLS 406 (456)
Q Consensus 366 ------~-~~~~i~~~--g~i~~Lv~ll~~~~--~~~--~~~~A~~~L~~l~~~ 406 (456)
+ .+..+... ..++.|+.++.... .+. ..+.+..+|..++..
T Consensus 530 ~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~ 583 (960)
T 1wa5_C 530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQT 583 (960)
T ss_dssp SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHH
T ss_pred cccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHH
Confidence 1 12223211 34566667776531 011 345677777766543
No 173
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.99 E-value=0.057 Score=41.95 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=28.9
Q ss_pred Cccccccchh-hccCccc--CCCCccccHHHHHHHH
Q 012813 74 EEFKCPLSKE-LMRDPVI--LASGQTFDRPYIQRWL 106 (456)
Q Consensus 74 ~~f~Cpi~~~-~m~dPv~--l~~g~~~~r~~I~~~~ 106 (456)
+++.|+|+.+ ...+||. ++||++||+.+++.+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4788999996 4889998 9999999999999843
No 174
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.46 E-value=9.6 Score=36.02 Aligned_cols=194 Identities=10% Similarity=0.030 Sum_probs=134.3
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-ccchhhcc--cCccHHHHhcccc-CChhHHHHHHHHHHHhccCchhh
Q 012813 254 MVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGK--SGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENK 329 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~--~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~ 329 (456)
+.+..|+..|..=+.+.|+.++....++.... ..+...++ ..-.+.|..|+.. ++++..-.+-..|+....++...
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence 47777888888889999999998888877543 22222211 0112222233332 25556666667777777777777
Q ss_pred HHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhhC---cHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 012813 330 ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLG---GVSCMLRIIRESTCDRNKENCIAILHTI 403 (456)
Q Consensus 330 ~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~A~~~L~~l 403 (456)
..+...+.+-.+.+.+..+ ++...|..++..|-. +.....++...+ .....-.+|.++ +-.++++++.+|..|
T Consensus 158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKLLgel 236 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGEL 236 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHHH
Confidence 7777878888888888876 677778888877754 666666776654 466777888865 488999999999988
Q ss_pred hccCh--hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012813 404 CLSDR--TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 448 (456)
Q Consensus 404 ~~~~~--~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~ 448 (456)
-.... .-....+....-+..++.|+++.+..++-.|=-+.+-+-.
T Consensus 237 Lldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 237 LLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 76533 2223344455667788889999999999988888776643
No 175
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.97 E-value=0.65 Score=42.78 Aligned_cols=171 Identities=13% Similarity=0.092 Sum_probs=103.4
Q ss_pred hcCCchhHHHHHHHHHHHhhcCchhhhhhhccCCc-hhhhhhccccccccCCCChhhHHHHHHHHHcccc---CcchhHH
Q 012813 173 MSATLPDQTEAAKELRLLTKRMPSFRALFGESHDA-IPQLLSPLSESKCENGINPNLQEDVITTLLNLSI---HDNNKKL 248 (456)
Q Consensus 173 L~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~---~~~~~~~ 248 (456)
++.+...+.+|+..|......+++ ..+.. .+. +..+.-.+. +.+..+...++.+|..+.. ..+.+-.
T Consensus 56 fs~d~k~~~~ale~L~~~l~~~~~--~~~~~-lDll~kw~~lr~~------d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 56 FHKDFKQHLAALDSLVRLADTSPR--SLLSN-SDLLLKWCTLRFF------ETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHH--HHHHT-HHHHHHHHHHHTT------SCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHHHHHHHHhhhChH--HHHHH-HHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 355666777788877765543221 22222 112 222221222 3467777777777766521 1111111
Q ss_pred HhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchh
Q 012813 249 VAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHEN 328 (456)
Q Consensus 249 i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~ 328 (456)
-.+..-++|.|+.-+.++...+|..+-.+|..++.. ..-..+++.+++-+++.+..++..++..|..+-.....
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 111123789888888777788999888887776532 12234567788888888999999999998888543322
Q ss_pred hHHHHhcCcH---HHHHHHHcCC--chHHHHHHHHHHhh
Q 012813 329 KARAVRDGGV---SVILKKIMDG--VHVDELLAILAMLS 362 (456)
Q Consensus 329 ~~~~v~~g~v---~~Lv~lL~~~--~~~~~a~~~L~~L~ 362 (456)
. ...++ |.+.+++.+. .+++.|+.++..+-
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 23467 8898988876 57777777766544
No 176
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=90.09 E-value=2.1 Score=41.68 Aligned_cols=143 Identities=10% Similarity=0.155 Sum_probs=93.7
Q ss_pred cCccHHHHhcccc-----------CChhHHHHHHHHHHHhccCchhhHHHHhc-CcHHHHHHHHcCC--chHHHHHHHHH
Q 012813 294 SGALKPLIDLLDE-----------GHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILA 359 (456)
Q Consensus 294 ~G~i~~Lv~lL~~-----------~~~~~~~~a~~aL~~L~~~~~~~~~~v~~-g~v~~Lv~lL~~~--~~~~~a~~~L~ 359 (456)
.+|+..|+++|.. .+......++.+|..|.....+...+... .++..|...|.+. .++..++.+|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4556677766642 13456678899999999888888888765 7789999888765 56777999999
Q ss_pred HhhCCHH---HHHHHHhh----------CcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChh-----hHHHHHHhhccH
Q 012813 360 MLSTNHR---AVEEIGDL----------GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-----KWKAMREEESTH 421 (456)
Q Consensus 360 ~L~~~~~---~~~~i~~~----------g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~-----~~~~~~~~~g~~ 421 (456)
.+|..++ |...+.++ .-...++..+..+.+...+..+...+-.+....++ ..+.-+...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 9997543 24333221 23677888887644466666666666666665442 223333456777
Q ss_pred HHHHHHhhcCCHHHH
Q 012813 422 GTISKLAQDGTARAK 436 (456)
Q Consensus 422 ~~L~~Ll~~~~~~~k 436 (456)
+.+.++-..+++.+.
T Consensus 268 ~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 268 QVLQELREIENEDMK 282 (383)
T ss_dssp HHHHHHTTSCCHHHH
T ss_pred HHHHHHhcCCChhHH
Confidence 777776554555443
No 177
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=89.48 E-value=0.51 Score=47.84 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=102.4
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCH
Q 012813 177 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 256 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i 256 (456)
..+++.+++.|..+ ..-+.. ...+..|+..+. ....+++--++-.|.++ .+ .+..-++++
T Consensus 242 APVRETaAQtLGaL-~hLp~e-------~~IL~qLV~~l~------~~~WEVRHGGLLGLKYL---~D---LL~~Ld~Vv 301 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-------NDIIEQLVGFLD------SGDWQVQFSGLIALGYL---KE---FVEDKDGLC 301 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-------CCHHHHHTTGGG------CSCHHHHHHHHHHHHHT---GG---GCCCHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh-------HHHHHHHHhhcC------CCCeeehhhhHHHHHHH---HH---HHHHHHHHH
Confidence 46788888888887 532222 234555555555 34579999999999998 11 111123578
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccC-Ch-hHHHHHHHHHHHhccCchhhHHHHh
Q 012813 257 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-HQ-SAMKDVASAIFNLCITHENKARAVR 334 (456)
Q Consensus 257 ~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~-~~-~~~~~a~~aL~~L~~~~~~~~~~v~ 334 (456)
+.++.-|.+.+.++|..||.+|.-++ ..+. + ..++..|.+.|.+- +. ......+..|..|+..+.+ ....
T Consensus 302 ~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~---l--~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~d 373 (800)
T 3oc3_A 302 RKLVSLLSSPDEDIKLLSAELLCHFP-ITDS---L--DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIP 373 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHTTSC-CSST---H--HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCC
T ss_pred HHHHhhcCCcccHHHHHHHHHhhhhc-chhh---H--HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccC
Confidence 88888888999999999999999888 1110 0 12344444444432 22 2345567788888776642 1122
Q ss_pred cCcHHHHHHHHcCC--chHHHHHHHHHHhh
Q 012813 335 DGGVSVILKKIMDG--VHVDELLAILAMLS 362 (456)
Q Consensus 335 ~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~ 362 (456)
...||.|..++... .++..++.+|..+.
T Consensus 374 p~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 374 PERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 36788888888876 77888888887777
No 178
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.45 E-value=9.6 Score=36.01 Aligned_cols=156 Identities=17% Similarity=0.077 Sum_probs=115.0
Q ss_pred hhcccCccHHHHhccccCChhHHHHHHHHHHHhccCch-hhHHHHh---c--CcHHHHHHHHcCCchHHHHHHHHHHhhC
Q 012813 290 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARAVR---D--GGVSVILKKIMDGVHVDELLAILAMLST 363 (456)
Q Consensus 290 ~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~~v~---~--g~v~~Lv~lL~~~~~~~~a~~~L~~L~~ 363 (456)
.+...+.+..|+..|..-+-+.++.+.....+|..... ++.-.++ . ..+..|++.-..+++.-.+=.+|..++.
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 34456888999999988888999999999999877543 3322222 1 2333444433455777778888899999
Q ss_pred CHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHh--hccHHHHHHHhhcCCHHHHHHHHH
Q 012813 364 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREE--ESTHGTISKLAQDGTARAKRKATG 441 (456)
Q Consensus 364 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~--~g~~~~L~~Ll~~~~~~~k~~A~~ 441 (456)
++.....+...+.+..+.+.++.++ -.+..-|..++..|-......+.+.+.. ..+......|+++++--+|+++..
T Consensus 153 ~e~la~~iL~~~~f~~fF~yv~~~~-FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 153 HEPLAKIILWSEQFYDFFRYVEMST-FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCSS-HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCC-chHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 9988888888888888899998654 7778888888888776665555555531 235567777899999999999999
Q ss_pred HHHHH
Q 012813 442 ILERL 446 (456)
Q Consensus 442 ~L~~l 446 (456)
+|..+
T Consensus 232 LLgel 236 (341)
T 1upk_A 232 LLGEL 236 (341)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99865
No 179
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=89.30 E-value=2.6 Score=37.89 Aligned_cols=131 Identities=8% Similarity=0.114 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHhccCchhhHHHHhc-CcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH--H-HHHHHhh--------
Q 012813 309 QSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLSTNHR--A-VEEIGDL-------- 374 (456)
Q Consensus 309 ~~~~~~a~~aL~~L~~~~~~~~~~v~~-g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~--~-~~~i~~~-------- 374 (456)
......++.+|..|.....+...+... +++..|...|..+ ..+..++.+|..+|..++ | ...+.++
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 456778899999999888888888764 7788888888765 566778899999987543 5 4333221
Q ss_pred --CcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChh-----hHHHHHHhhccHHHHHHHhhcCCHHHHHHH
Q 012813 375 --GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-----KWKAMREEESTHGTISKLAQDGTARAKRKA 439 (456)
Q Consensus 375 --g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~-----~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A 439 (456)
.-...+++.++.+.+...+..+...+-.|....++ ..+.-+...|..+.+.++-..+++.+..+-
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi 219 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQL 219 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHH
Confidence 23566777776544456666666666666655442 223333456888888777766777665443
No 180
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.11 E-value=12 Score=40.83 Aligned_cols=212 Identities=13% Similarity=0.114 Sum_probs=120.5
Q ss_pred CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHH---hcCCHHHHHHHHHHHHHhccC-CccchhhcccCccH
Q 012813 223 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL---RSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALK 298 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL---~~~~~~~~~~aa~aL~~Ls~~-~~~~~~i~~~G~i~ 298 (456)
+.+...++.++.++..++..-.. .....++.++..+ .++++.++..++++|..++.. ..+...+ ..+++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~-----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~ 532 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDV-----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLP 532 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCS-----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCc-----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHH
Confidence 34677888888888888755321 0112455555554 234688999999999988753 2222222 36788
Q ss_pred HHHhccccCChhHHHHHHHHHHHhccCchhhHHHHh--cCcHHHHHHHHcCC----chHHHHHHHHHHhhCC--HHHHHH
Q 012813 299 PLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR--DGGVSVILKKIMDG----VHVDELLAILAMLSTN--HRAVEE 370 (456)
Q Consensus 299 ~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~--~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~~--~~~~~~ 370 (456)
.|+..|.+ +.++..|+.+|.++|... +..+.. ...+..|..++..+ ..+..++.++..++.. ++....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 88888854 789999999999998532 222322 13344455555542 4566677778887753 244433
Q ss_pred HHhhCcHHHHHHHhh----hcCChhHHHH---HHHHHHHHhccCh----------------------hhHHHHHHhhccH
Q 012813 371 IGDLGGVSCMLRIIR----ESTCDRNKEN---CIAILHTICLSDR----------------------TKWKAMREEESTH 421 (456)
Q Consensus 371 i~~~g~i~~Lv~ll~----~~~~~~~~~~---A~~~L~~l~~~~~----------------------~~~~~~~~~~g~~ 421 (456)
..+. .++.+...+. ...++..+.. ...+|..+...-. .....+. ....
T Consensus 609 ~~~~-l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 685 (963)
T 2x19_B 609 NLHS-LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL--QQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH--HHHH
T ss_pred HHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH--HHHH
Confidence 3322 3444443332 2223444443 3344433332211 1111222 3556
Q ss_pred HHHHHHhhc--CCHHHHHHHHHHHHHHhc
Q 012813 422 GTISKLAQD--GTARAKRKATGILERLKR 448 (456)
Q Consensus 422 ~~L~~Ll~~--~~~~~k~~A~~~L~~l~~ 448 (456)
+.+..++.. .++.+.+.+..+++.+..
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 666666643 467889988888887643
No 181
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.01 E-value=6.2 Score=43.15 Aligned_cols=211 Identities=15% Similarity=0.095 Sum_probs=117.0
Q ss_pred CChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHH---h--cCCHHHHHHHHHHHHHhccC-CccchhhcccCcc
Q 012813 224 INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL---R--SGTIETRSNAAAALFTLSAL-DSNKEVIGKSGAL 297 (456)
Q Consensus 224 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL---~--~~~~~~~~~aa~aL~~Ls~~-~~~~~~i~~~G~i 297 (456)
.+...++.++.++..++..-.... . ..++.++.++ . ++++.+|..++++|..++.. ..+...+ ..++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~-~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----K-RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----h-HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 355678888888888865433111 1 2455555544 2 24788999999999988753 2222111 2456
Q ss_pred HHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHh--cCcHHHHHHHHcCC----chHHHHHHHHHHhhCC--HHHHH
Q 012813 298 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR--DGGVSVILKKIMDG----VHVDELLAILAMLSTN--HRAVE 369 (456)
Q Consensus 298 ~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~--~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~~--~~~~~ 369 (456)
+.|+..| + +.+...|+.+|.+||... +..+.. ...+..|..++..+ ..+..++.++..++.. ++...
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 7777777 2 779999999999999433 233332 24555566666653 4566677777776542 23332
Q ss_pred HHHhhCcHHHHHH----HhhhcC-ChhHHHHHHHHHHHHhccC----------------hhhHHHHHHhhccHHHHHHHh
Q 012813 370 EIGDLGGVSCMLR----IIREST-CDRNKENCIAILHTICLSD----------------RTKWKAMREEESTHGTISKLA 428 (456)
Q Consensus 370 ~i~~~g~i~~Lv~----ll~~~~-~~~~~~~A~~~L~~l~~~~----------------~~~~~~~~~~~g~~~~L~~Ll 428 (456)
...+. .++.++. +++... ++..+......|..|+..- +....... ...++.+..++
T Consensus 624 ~~~~~-ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l 700 (971)
T 2x1g_F 624 KYLDI-IVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIA 700 (971)
T ss_dssp HHHHH-HHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHH
Confidence 22221 2333333 333221 2334444555555444211 01112222 35677777777
Q ss_pred hc--CCHHHHHHHHHHHHHHhcc
Q 012813 429 QD--GTARAKRKATGILERLKRT 449 (456)
Q Consensus 429 ~~--~~~~~k~~A~~~L~~l~~~ 449 (456)
.. .++.+.+.+.++++.+...
T Consensus 701 ~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 701 EMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHh
Confidence 54 3678999999999986543
No 182
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=88.38 E-value=2.3 Score=42.21 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=72.7
Q ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcc
Q 012813 165 HFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 244 (456)
Q Consensus 165 ~i~~Lv~~L~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 244 (456)
....++...+++...+.-|..-|....+..++... .++..+++++. ++|..++..|+..|-.++.+ +
T Consensus 30 ~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~------~Ai~a~lDLcE------Ded~~IR~qaik~Lp~~ck~-~ 96 (507)
T 3u0r_A 30 AYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELAD------SAINAQLDLCE------DEDVSIRRQAIKELPQFATG-E 96 (507)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHH------HHHHHHHHHHT------CSSHHHHHHHHHHGGGGCCT-T
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHh------cccHHHHHHHHHhhHHHhhh-h
Confidence 34556666677788888888889888887777643 47778999988 67889999999999999988 5
Q ss_pred hhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 012813 245 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 283 (456)
Q Consensus 245 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~ 283 (456)
+...+ ...|+.+|...++.-....-.+|..|-.
T Consensus 97 ~i~ki------aDvL~QlLqtdd~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 97 NLPRV------ADILTQLLQTDDSAEFNLVNNALLSIFK 129 (507)
T ss_dssp CHHHH------HHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhH------HHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 43333 4457888887775555555455555443
No 183
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=87.96 E-value=6.5 Score=35.19 Aligned_cols=82 Identities=23% Similarity=0.211 Sum_probs=61.1
Q ss_pred CCchhhhhhccccccccC-----CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 012813 205 HDAIPQLLSPLSESKCEN-----GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALF 279 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~-----~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~ 279 (456)
.+|+..|+..|....... ..+...+..++..|..+.........+...+.++..|+..|.+.++.++..++..|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 578888888876432100 113456777888888887777777777777788998998898889999999999999
Q ss_pred HhccCCc
Q 012813 280 TLSALDS 286 (456)
Q Consensus 280 ~Ls~~~~ 286 (456)
.+|..++
T Consensus 122 ~lc~~~~ 128 (233)
T 2f31_A 122 ALCILPQ 128 (233)
T ss_dssp HHHTCSS
T ss_pred HHHhCCC
Confidence 8887654
No 184
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=87.59 E-value=6.3 Score=36.10 Aligned_cols=177 Identities=14% Similarity=0.140 Sum_probs=107.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhc----cccCChhHHHHHHHHHHHhccCchhh-HH
Q 012813 257 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDL----LDEGHQSAMKDVASAIFNLCITHENK-AR 331 (456)
Q Consensus 257 ~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~l----L~~~~~~~~~~a~~aL~~L~~~~~~~-~~ 331 (456)
+-+...|-+.+..-+..++..|...... +...+.. .+..+++- +.+.+..+...++.+|..+...-... ..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4456666666777777777666654321 1112211 12223332 22557788888888887764321111 11
Q ss_pred HH--h-cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhcc
Q 012813 332 AV--R-DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 406 (456)
Q Consensus 332 ~v--~-~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 406 (456)
+. + .-.+|.|++-+.+. .+++.+-.+|..++.- .--....+.++.-+++. +.++++.++..|..+-..
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSK-NARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh
Confidence 21 1 23689999999876 4677777777666531 11112345566666644 599999999988887654
Q ss_pred ChhhHHHHHHhhccH---HHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 012813 407 DRTKWKAMREEESTH---GTISKLAQDGTARAKRKATGILERLKRTV 450 (456)
Q Consensus 407 ~~~~~~~~~~~~g~~---~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~ 450 (456)
..-. ....+ +.+.+++.+.+..+|..|...+-.+-++.
T Consensus 198 ~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 198 AGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 3221 13567 88999999999999999999887665543
No 185
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.57 E-value=5.2 Score=38.88 Aligned_cols=129 Identities=9% Similarity=0.122 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHhccCchhhHHHHhc-CcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH--H-HHHHHh---------
Q 012813 309 QSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLSTNHR--A-VEEIGD--------- 373 (456)
Q Consensus 309 ~~~~~~a~~aL~~L~~~~~~~~~~v~~-g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~--~-~~~i~~--------- 373 (456)
......++.+|..|.....+...+... +++..|...|..+ .++..++.+|..+|..++ | ...+.+
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 456778899999999888888877764 7788888888765 456678888999988543 5 333321
Q ss_pred -hCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChh-----hHHHHHHhhccHHHHHHHhhcCCHHHHH
Q 012813 374 -LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-----KWKAMREEESTHGTISKLAQDGTARAKR 437 (456)
Q Consensus 374 -~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~-----~~~~~~~~~g~~~~L~~Ll~~~~~~~k~ 437 (456)
..-...||+.+..+.+...+..+...+-.|....++ ..+.-+...|+.+.|-++-..+++.+..
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 221 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence 124566888887554466676666666666665542 2333344567777877776666665543
No 186
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=86.05 E-value=6 Score=37.63 Aligned_cols=125 Identities=9% Similarity=0.072 Sum_probs=92.0
Q ss_pred HHHhccCCccch-hhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcC---CchHHH
Q 012813 278 LFTLSALDSNKE-VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD---GVHVDE 353 (456)
Q Consensus 278 L~~Ls~~~~~~~-~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~---~~~~~~ 353 (456)
|.+|...+.|.. -+++..++..+..++.-++.++.+..+..|...+....-+..-. ...+|.++..+.- +++...
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEe
Confidence 567777776644 57788889999999988999999999999999876654332222 2478888888872 278889
Q ss_pred HHHHHHHhhCCH-HHHHHHHhhCcHHHHHHHhhhcC------ChhHHHHHHHHHHHH
Q 012813 354 LLAILAMLSTNH-RAVEEIGDLGGVSCMLRIIREST------CDRNKENCIAILHTI 403 (456)
Q Consensus 354 a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~------~~~~~~~A~~~L~~l 403 (456)
..+.|.|+..+. ..++..+..|+|..|...+.... +..-+..|+++++|-
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 999999999985 56666688899999988876531 122355566666653
No 187
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=85.12 E-value=12 Score=36.29 Aligned_cols=142 Identities=20% Similarity=0.196 Sum_probs=95.8
Q ss_pred CCchhhhhhccccccc-----cCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 012813 205 HDAIPQLLSPLSESKC-----ENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALF 279 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~-----~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~ 279 (456)
.+|+..|+.+|..... ....+...+..++.+|..+..+......+...+..+..|+..|.+.++.++..+...|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4678888888853211 00224567777888888887777777778888888999999999889999999999999
Q ss_pred HhccCCc--c-chhhc----------ccCccHHHHhcccc-CChhHHHHHHHHHHHhccCch-------hhHHHHhcCcH
Q 012813 280 TLSALDS--N-KEVIG----------KSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHE-------NKARAVRDGGV 338 (456)
Q Consensus 280 ~Ls~~~~--~-~~~i~----------~~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~-------~~~~~v~~g~v 338 (456)
.+|..++ + ...+. +..-+..++..|.+ .+.+.+..++..+-.+....+ -|..+...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 8887653 3 22222 24567888898887 466677767766666665543 23334455655
Q ss_pred HHHHHHHcC
Q 012813 339 SVILKKIMD 347 (456)
Q Consensus 339 ~~Lv~lL~~ 347 (456)
+.+- .|+.
T Consensus 268 ~il~-~lr~ 275 (383)
T 3eg5_B 268 QVLQ-ELRE 275 (383)
T ss_dssp HHHH-HHTT
T ss_pred HHHH-HHhc
Confidence 5544 4654
No 188
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=85.09 E-value=1.6 Score=39.65 Aligned_cols=169 Identities=11% Similarity=0.068 Sum_probs=89.4
Q ss_pred CchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHH
Q 012813 194 MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSN 273 (456)
Q Consensus 194 ~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~ 273 (456)
++..|..... .=....|..++. +.++.++..++..| . .+.|..++++.+..+|..
T Consensus 63 ~~~VR~~AA~-~l~~~~l~~L~~------D~~~~VR~~aA~~L---~---------------~~~L~~ll~D~d~~VR~~ 117 (244)
T 1lrv_A 63 FWERRAIAVR-YSPVEALTPLIR------DSDEVVRRAVAYRL---P---------------REQLSALMFDEDREVRIT 117 (244)
T ss_dssp SHHHHHHHHT-TSCGGGGGGGTT------CSSHHHHHHHHTTS---C---------------SGGGGGTTTCSCHHHHHH
T ss_pred CHHHHHHHHH-hCCHHHHHHHcc------CcCHHHHHHHHHHC---C---------------HHHHHHHHcCCCHHHHHH
Confidence 3445665555 222344555555 56778888877532 1 123566677888888888
Q ss_pred HHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chH
Q 012813 274 AAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHV 351 (456)
Q Consensus 274 aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~ 351 (456)
++..| . .+.|..++.+++..++..++.. +. .+.+..++.++ .++
T Consensus 118 aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~~VR 163 (244)
T 1lrv_A 118 VADRL---P--------------LEQLEQMAADRDYLVRAYVVQR---IP--------------PGRLFRFMRDEDRQVR 163 (244)
T ss_dssp HHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHH---SC--------------GGGGGGTTTCSCHHHH
T ss_pred HHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHh---cC--------------HHHHHHHHcCCCHHHH
Confidence 77632 1 1345566677777777777662 11 11122223333 222
Q ss_pred HHHHH-----HHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHH
Q 012813 352 DELLA-----ILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTI 424 (456)
Q Consensus 352 ~~a~~-----~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L 424 (456)
..++. +|..+..+ .+.|..+...-..+.|..++... +..++..++..|. .+.|
T Consensus 164 ~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~-d~~VR~~aa~~l~-------------------~~~L 223 (244)
T 1lrv_A 164 KLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDP-DWTVRLAAVEHAS-------------------LEAL 223 (244)
T ss_dssp HHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCS-SHHHHHHHHHHSC-------------------HHHH
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCC-CHHHHHHHHHcCC-------------------HHHH
Confidence 22222 12222222 34444444443445555565543 3666666655531 3455
Q ss_pred HHHhhcCCHHHHHHHHHH
Q 012813 425 SKLAQDGTARAKRKATGI 442 (456)
Q Consensus 425 ~~Ll~~~~~~~k~~A~~~ 442 (456)
..| ++.+..+++.|...
T Consensus 224 ~~L-~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 224 REL-DEPDPEVRLAIAGR 240 (244)
T ss_dssp HHC-CCCCHHHHHHHHCC
T ss_pred HHc-cCCCHHHHHHHHHH
Confidence 566 77788888887654
No 189
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=84.88 E-value=0.38 Score=37.22 Aligned_cols=33 Identities=12% Similarity=0.314 Sum_probs=29.5
Q ss_pred ccccccchhhccCcccCCCCccccHHHHHHHHhcC
Q 012813 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG 109 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~ 109 (456)
.++||+|++.+..+.++|+ ...|..|+.|+..+
T Consensus 63 ~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 63 SPTDPFNRQTLTESMLEPV--PELKEQIQAWMREK 95 (100)
T ss_dssp CSBCSSSCCBCCTTSSEEC--HHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCChhhceEC--HHHHHHHHHHHHHh
Confidence 5899999999999889998 77999999999863
No 190
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=82.96 E-value=11 Score=41.80 Aligned_cols=139 Identities=10% Similarity=-0.021 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHhccCCcc-chhhcccCccHHHHhcccc-----CChhHHHHHHHHHHHhccCchhhHHHHhcCcHH
Q 012813 266 GTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDE-----GHQSAMKDVASAIFNLCITHENKARAVRDGGVS 339 (456)
Q Consensus 266 ~~~~~~~~aa~aL~~Ls~~~~~-~~~i~~~G~i~~Lv~lL~~-----~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~ 339 (456)
.+...+++++++++.++..... ...-.-..+++.|+.++.. ....++..++++|+..+..-.....+.. .++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 4789999999999999864322 1211123567888888763 2233445677888877654332222211 2455
Q ss_pred HHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHh------hCcHHHHHH----HhhhcCChhHHHHHHHHHHHHhccC
Q 012813 340 VILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGD------LGGVSCMLR----IIRESTCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 340 ~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~------~g~i~~Lv~----ll~~~~~~~~~~~A~~~L~~l~~~~ 407 (456)
.|++.|.++ .+++.|+.+|.+||.. .+..+.. ...++.++. ....- ++.....+..++..+....
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l-~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADL-QPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhC
Confidence 555655443 6899999999999963 3344432 113444443 33322 3666778888888887765
Q ss_pred h
Q 012813 408 R 408 (456)
Q Consensus 408 ~ 408 (456)
+
T Consensus 621 ~ 621 (1023)
T 4hat_C 621 R 621 (1023)
T ss_dssp C
T ss_pred C
Confidence 5
No 191
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=82.28 E-value=15 Score=35.51 Aligned_cols=142 Identities=22% Similarity=0.215 Sum_probs=92.6
Q ss_pred CCchhhhhhccccccccC-----CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 012813 205 HDAIPQLLSPLSESKCEN-----GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALF 279 (456)
Q Consensus 205 ~g~i~~Lv~lL~~~~~~~-----~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~ 279 (456)
.+|+..|+..|....... ..+...+..++.+|..+..+......+...+.++..|+..|.+.++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 467888888775332100 113456777888888887777777777777778898999898888999999998898
Q ss_pred HhccCCc--c-chhhc----------ccCccHHHHhcccc-CChhHHHHHHHHHHHhccCch-------hhHHHHhcCcH
Q 012813 280 TLSALDS--N-KEVIG----------KSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHE-------NKARAVRDGGV 338 (456)
Q Consensus 280 ~Ls~~~~--~-~~~i~----------~~G~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~-------~~~~~v~~g~v 338 (456)
.+|..++ + ...+. +..-+..|++.+.+ .+.+.+..++..+-.|....+ -|..+...|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8887653 3 22222 23466678888864 455666666666666665543 23444455555
Q ss_pred HHHHHHHcC
Q 012813 339 SVILKKIMD 347 (456)
Q Consensus 339 ~~Lv~lL~~ 347 (456)
+. ++.|..
T Consensus 206 ~i-l~~Lr~ 213 (386)
T 2bnx_A 206 QV-LQELRE 213 (386)
T ss_dssp HH-HHHHTT
T ss_pred HH-HHHHhc
Confidence 54 455553
No 192
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=81.88 E-value=19 Score=39.55 Aligned_cols=215 Identities=7% Similarity=0.003 Sum_probs=115.1
Q ss_pred ChhhHHHHHHHHHccccCcch-hHHHhc----CCCCHHHHHHHHh-----cCCHHHHHHHHHHHHHhccCCc-cchhhcc
Q 012813 225 NPNLQEDVITTLLNLSIHDNN-KKLVAE----TPMVIPLLMDALR-----SGTIETRSNAAAALFTLSALDS-NKEVIGK 293 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~-~~~i~~----~~~~i~~Lv~lL~-----~~~~~~~~~aa~aL~~Ls~~~~-~~~~i~~ 293 (456)
+....|.++-+|..++..-.+ ...+.+ .+..++.+..+++ .+.+.++..+++++...+..=. +...+
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l-- 533 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAI-- 533 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTH--
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhH--
Confidence 356778888888877654221 111101 1124455555655 5578999999999988875322 11111
Q ss_pred cCccHHHHh--ccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcC-------C-c--------------
Q 012813 294 SGALKPLID--LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD-------G-V-------------- 349 (456)
Q Consensus 294 ~G~i~~Lv~--lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~-------~-~-------------- 349 (456)
..+++.++. .+.+.++.++..|+.++.++|..... .+. +-++.++..+.+ + .
T Consensus 534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~--~L~--~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~ 609 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK--QVV--NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIR 609 (980)
T ss_dssp HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT--TCS--SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHH
T ss_pred HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH--Hhh--hHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcc
Confidence 233444444 44456788999999999999875432 232 345555555431 1 0
Q ss_pred -----h---HHHHHHHHHHhhCC-HHHHHHHHhhCcHHHHH----HHhhhcC---ChhHH-HHHHHHHHHHhccChhh--
Q 012813 350 -----H---VDELLAILAMLSTN-HRAVEEIGDLGGVSCML----RIIREST---CDRNK-ENCIAILHTICLSDRTK-- 410 (456)
Q Consensus 350 -----~---~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv----~ll~~~~---~~~~~-~~A~~~L~~l~~~~~~~-- 410 (456)
- .-.|++.|...... ++.+....+. .++.++ ..+.... ++..+ .+.+.++..+++..+..
T Consensus 610 ~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~-ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~ 688 (980)
T 3ibv_A 610 NSDFNSQLYLFETVGVLISSGNLTPEEQALYCDS-LINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGS 688 (980)
T ss_dssp TTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-
T ss_pred cCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccC
Confidence 0 22344444444443 4444443333 334443 3332221 11111 24566667777654321
Q ss_pred ----HHHHHHhhccHHHHHHHhh--cCCHHHHHHHHHHHHHHhc
Q 012813 411 ----WKAMREEESTHGTISKLAQ--DGTARAKRKATGILERLKR 448 (456)
Q Consensus 411 ----~~~~~~~~g~~~~L~~Ll~--~~~~~~k~~A~~~L~~l~~ 448 (456)
+...+ ....+.+...+. ..+..+++++...++.+-.
T Consensus 689 ~~~p~~~~f--~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~ 730 (980)
T 3ibv_A 689 EEVAWLASF--NKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN 730 (980)
T ss_dssp CCCSHHHHH--HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 22333 245555655555 4577899999999987643
No 193
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=80.33 E-value=22 Score=35.26 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=77.2
Q ss_pred CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHh
Q 012813 307 GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRII 384 (456)
Q Consensus 307 ~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll 384 (456)
++...+..|+..|......-.... ..++..++++..+. .++..|+..|..+|.+ +.... ++..|+++|
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~QlL 109 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELA----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQLL 109 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGH----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHHHH
Confidence 467778888888777655433222 12677788888765 5677788888888887 33322 356788999
Q ss_pred hhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012813 385 RESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 444 (456)
Q Consensus 385 ~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~ 444 (456)
+..+ +.-....-.+|..|-..++. +.+..|..-+.++++.+|+++...|+
T Consensus 110 qtdd-~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 110 QTDD-SAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp TCCC-HHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hccc-hHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 8653 66666677777777776653 22334444444467788888777764
No 194
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=79.54 E-value=0.67 Score=35.65 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=28.5
Q ss_pred ccccccchhhccCcccCCCCccccHHHHHHHHhc
Q 012813 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA 108 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~ 108 (456)
+.+||+|++.+....++|+ ...|..|+.|+..
T Consensus 57 ~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIRPN--TELKEKIQRWLAE 88 (98)
T ss_dssp SCBCTTTCSBCCTTTSEEC--HHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCChhhceEc--HHHHHHHHHHHHH
Confidence 5689999999998888897 7799999999976
No 195
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=77.85 E-value=8.3 Score=31.52 Aligned_cols=70 Identities=7% Similarity=0.111 Sum_probs=55.0
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012813 377 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 447 (456)
Q Consensus 377 i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~ 447 (456)
+..|.+-|.+. ++.++..|+.+|-.+..+........+....++..|.+++...++.++++...++....
T Consensus 44 ~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 55677777765 48999999999999888876655555545578888888887778899999999998765
No 196
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=77.48 E-value=76 Score=35.09 Aligned_cols=125 Identities=13% Similarity=0.067 Sum_probs=74.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcccc-------CChhHHHHHHHHHHHhccCchhhH
Q 012813 258 LLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-------GHQSAMKDVASAIFNLCITHENKA 330 (456)
Q Consensus 258 ~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~-------~~~~~~~~a~~aL~~L~~~~~~~~ 330 (456)
.|...+..++.+-+..+..+|.|+.. .+.++.|.+++.. ....++..|+++|..+.......
T Consensus 444 ~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~- 512 (1056)
T 1lsh_A 444 LLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK- 512 (1056)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-
T ss_pred HHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-
Confidence 34455566777778888889998864 2356777777642 13467788999999887432211
Q ss_pred HHHhcCcHHHHHHHHcCC----chHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhcc
Q 012813 331 RAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 406 (456)
Q Consensus 331 ~~v~~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 406 (456)
+-+.|+.+..+. +++-.|+.+| +-++|. ...+..+...+....+..+.......|.+++..
T Consensus 513 ------v~~il~~i~~n~~e~~EvRiaA~~~L--m~t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 513 ------VQEIVLPIFLNVAIKSELRIRSCIVF--FESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp ------HHHHHHHHHHCTTSCHHHHHHHHHHH--HHTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHhcCCCCChHHHHHHHHHH--HHHCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 235566666543 3333333333 322221 112455666666555566777777777777776
Q ss_pred Ch
Q 012813 407 DR 408 (456)
Q Consensus 407 ~~ 408 (456)
..
T Consensus 578 ~~ 579 (1056)
T 1lsh_A 578 SN 579 (1056)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 197
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=77.17 E-value=12 Score=35.57 Aligned_cols=111 Identities=17% Similarity=0.103 Sum_probs=81.7
Q ss_pred HHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHh-c
Q 012813 187 LRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-S 265 (456)
Q Consensus 187 L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~-~ 265 (456)
|.+|-.++...-.-++. .++|..+...++ ..+.++.......|...|....-...-. ...+|.++..+. +
T Consensus 266 LL~LLmHdSnAIDGFVk-~DGv~~I~Tvin------YpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h 336 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVR-SDGVGAITTVVQ------YPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIH 336 (619)
T ss_dssp HHHHHCCSHHHHHHHHH-TTHHHHHHHHTT------SSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHC
T ss_pred HHHHHhcccccccceee-cccceeEEEEee------cCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccC
Confidence 44455545555667777 788999988888 5678888888998888765544222222 247899988886 5
Q ss_pred CCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhcccc
Q 012813 266 GTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDE 306 (456)
Q Consensus 266 ~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~ 306 (456)
+..++.....+.|.|..... .-|...+..|+|+.|-+.+..
T Consensus 337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 67899999999999998876 446666678999999887753
No 198
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=77.13 E-value=0.69 Score=34.46 Aligned_cols=32 Identities=13% Similarity=0.377 Sum_probs=28.0
Q ss_pred ccccccchhhccCcccCCCCccccHHHHHHHHhc
Q 012813 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA 108 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~ 108 (456)
.++||+|++.+....++|+ ...|..|+.|+..
T Consensus 48 ~~~cP~~~~~l~~~~l~pn--~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 48 SPTDPFNRQMLTESMLEPV--PELKEQIQAWMRE 79 (85)
T ss_dssp CSBCTTTCCBCCGGGCEEC--HHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCChHhcchH--HHHHHHHHHHHHH
Confidence 4789999999988888887 6799999999864
No 199
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=76.40 E-value=11 Score=41.67 Aligned_cols=217 Identities=10% Similarity=0.040 Sum_probs=120.5
Q ss_pred hhHHHHHHHh-cCCchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC
Q 012813 164 DHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 242 (456)
Q Consensus 164 ~~i~~Lv~~L-~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~ 242 (456)
..+..++..+ +.+...+.+|-..|..+... .++...+..+|.+ +.+..++--|+.+|.+....
T Consensus 16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-----------p~~~~~l~~iL~~-----s~~~~vr~~aa~~Lk~~i~~ 79 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----------PDAWQKADQILQF-----STNPQSKFIALSILDKLITR 79 (1049)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-----------TTGGGGHHHHHHH-----CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-----------chHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHh
Confidence 3455555544 34444566676667665442 4566667777754 34788999999999886432
Q ss_pred ------cchhHHHhcCCCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccCChh
Q 012813 243 ------DNNKKLVAETPMVIPLLMDALRSG-----TIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQS 310 (456)
Q Consensus 243 ------~~~~~~i~~~~~~i~~Lv~lL~~~-----~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~ 310 (456)
++.+..+-. .++..+...-..+ +..++...+.++..++..+ ...+ .+.++.|+.++. .++.
T Consensus 80 ~W~~l~~~~~~~ir~--~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W----p~ll~~L~~~~~-~~~~ 152 (1049)
T 3m1i_C 80 KWKLLPNDHRIGIRN--FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSS-SSVN 152 (1049)
T ss_dssp TGGGSCHHHHHHHHH--HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHT-TCHH
T ss_pred hCccCCHHHHHHHHH--HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHHc-cChH
Confidence 223333322 1233222221111 2456777777777776542 1111 467888888886 4555
Q ss_pred HHHHHHHHHHHhccCch---------hh-----HHHHhc--CcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHH
Q 012813 311 AMKDVASAIFNLCITHE---------NK-----ARAVRD--GGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEI 371 (456)
Q Consensus 311 ~~~~a~~aL~~L~~~~~---------~~-----~~~v~~--g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i 371 (456)
..+.++.+|..|+..-. .| ..+... .+++.+...+.+. .+...++.++......-+. ..+
T Consensus 153 ~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~ 231 (1049)
T 3m1i_C 153 VCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYI 231 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHH
Confidence 67778888887773211 11 112221 1223334444332 4567778887776553211 123
Q ss_pred HhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhcc
Q 012813 372 GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 406 (456)
Q Consensus 372 ~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 406 (456)
.+...++.+...+.. ++..+..|+.+|..+...
T Consensus 232 ~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 232 YETNILELLSTKFMT--SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhC
Confidence 445556666633322 378888999999888765
No 200
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=74.03 E-value=12 Score=31.50 Aligned_cols=72 Identities=3% Similarity=0.071 Sum_probs=55.2
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc-CCHHHHHHHHHHHHHHhc
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLKR 448 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~-~~~~~k~~A~~~L~~l~~ 448 (456)
++..|.+-|.+. ++.++..|+.+|-.+..+........+....++..|.+++.. .++.+++++..+++.-..
T Consensus 53 A~ral~krl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHK-VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 355677777765 499999999999999988766666555555788888888875 467899999999887653
No 201
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=73.68 E-value=13 Score=41.18 Aligned_cols=99 Identities=8% Similarity=0.048 Sum_probs=57.0
Q ss_pred ChhHHHHHHHHHHHhccCchhh-HHHHhcCcHHHHHHHHcCC-------chHHHHHHHHHHhhCCHHHHHHHHhhCcHHH
Q 012813 308 HQSAMKDVASAIFNLCITHENK-ARAVRDGGVSVILKKIMDG-------VHVDELLAILAMLSTNHRAVEEIGDLGGVSC 379 (456)
Q Consensus 308 ~~~~~~~a~~aL~~L~~~~~~~-~~~v~~g~v~~Lv~lL~~~-------~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~ 379 (456)
+=..++.++++++.++...... ..-.=..+++.|+.++... .++..++++|...+..=.....+.. ..+..
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl~~ 544 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVILK 544 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHH
Confidence 4577899999999998765321 2111124677888877632 1223344555554431110011111 13444
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHhccCh
Q 012813 380 MLRIIRESTCDRNKENCIAILHTICLSDR 408 (456)
Q Consensus 380 Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~ 408 (456)
|+..|..+ .++++.+|++++.+||....
T Consensus 545 L~~~l~~~-~~~v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 545 LFEFMHET-HEGVQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp HHHHTTCS-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhcC-CHHHHHHHHHHHHHHHHHHH
Confidence 55555433 37899999999999998543
No 202
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=73.50 E-value=0.46 Score=28.67 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=13.8
Q ss_pred ccccccchhhccCcccC
Q 012813 75 EFKCPLSKELMRDPVIL 91 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l 91 (456)
-|+||+|+.-+..|..|
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 59999999888877544
No 203
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=72.91 E-value=30 Score=38.18 Aligned_cols=198 Identities=8% Similarity=0.033 Sum_probs=108.9
Q ss_pred hhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccCC------ccchhhcccCccH
Q 012813 226 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALD------SNKEVIGKSGALK 298 (456)
Q Consensus 226 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~aL~~Ls~~~------~~~~~i~~~G~i~ 298 (456)
.+.+..|-..|..+. ..+++...+..+|.+ .+..+|..|+.+|.+..... +.+..| =.
T Consensus 30 ~~~r~~Ae~~L~~~~----------~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i-----r~ 94 (1049)
T 3m1i_C 30 GVQQKQAQEILTKFQ----------DNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI-----RN 94 (1049)
T ss_dssp HHHHHHHHHHHHHHH----------HSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH-----HH
T ss_pred hHHHHHHHHHHHHHH----------hCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH-----HH
Confidence 345556666665443 234566667777765 47889999999998876421 112222 23
Q ss_pred HHHhccccC---------ChhHHHHHHHHHHHhccCc--hhhHHHHhcCcHHHHHHHHcCC-chHHHHHHHHHHhhCC--
Q 012813 299 PLIDLLDEG---------HQSAMKDVASAIFNLCITH--ENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLSTN-- 364 (456)
Q Consensus 299 ~Lv~lL~~~---------~~~~~~~a~~aL~~L~~~~--~~~~~~v~~g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~~-- 364 (456)
.|+.++... ++.++...+.++..++... +.. .+.++.|+..+..+ ...+.++.+|..|+..
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~ 169 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSSSSVNVCENNMIVLKLLSEEVF 169 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 344444321 2456677777777776542 211 25788888888643 3467788888888731
Q ss_pred --------HHH----HHHHHhh--CcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc
Q 012813 365 --------HRA----VEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD 430 (456)
Q Consensus 365 --------~~~----~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~ 430 (456)
... +..+.+. ..+..+..++....++.++..++.++.+....-+.. .++. ..+++.+...+.
T Consensus 170 ~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~--~~~~-~~ll~~l~~~~l- 245 (1049)
T 3m1i_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYR--YIYE-TNILELLSTKFM- 245 (1049)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH--HHHS-SSHHHHHHTHHH-
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHH--HHhh-hhHHHHHHHHhC-
Confidence 111 1233332 123344555655445778888999988765543321 2222 344444442111
Q ss_pred CCHHHHHHHHHHHHHHh
Q 012813 431 GTARAKRKATGILERLK 447 (456)
Q Consensus 431 ~~~~~k~~A~~~L~~l~ 447 (456)
.++.++..|..+|..+-
T Consensus 246 ~~~~~~~~a~~~L~~i~ 262 (1049)
T 3m1i_C 246 TSPDTRAITLKCLTEVS 262 (1049)
T ss_dssp HSHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHH
Confidence 14556666666555443
No 204
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=70.46 E-value=1.1 Score=25.67 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=14.8
Q ss_pred CCccccccchhhccCcccC
Q 012813 73 PEEFKCPLSKELMRDPVIL 91 (456)
Q Consensus 73 p~~f~Cpi~~~~m~dPv~l 91 (456)
|..|.||+|+..|-|+-++
T Consensus 1 ~~k~~CpvCk~q~Pd~kt~ 19 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMDTL 19 (28)
T ss_dssp CCCEECTTSSCEESSHHHH
T ss_pred CCcccCccccccCcChHHH
Confidence 4578999999988887543
No 205
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=70.41 E-value=17 Score=29.93 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=55.6
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc------CCHHHHHHHHHHHHHHh
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD------GTARAKRKATGILERLK 447 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~------~~~~~k~~A~~~L~~l~ 447 (456)
++..|.+-+++. ++.++..|+.+|-.+..+.......-+....++..|.+++.. .++.+|++...++..-.
T Consensus 49 a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 355677777755 599999999999999988876665656556788889988852 46789999999998765
No 206
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=70.37 E-value=16 Score=30.89 Aligned_cols=70 Identities=10% Similarity=0.094 Sum_probs=55.2
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc------CCHHHHHHHHHHHHHHh
Q 012813 377 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD------GTARAKRKATGILERLK 447 (456)
Q Consensus 377 i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~------~~~~~k~~A~~~L~~l~ 447 (456)
+..|.+-+++. ++.++..|+.+|-.+..+........+....++..|.+++.. .+..+|+++..++..-.
T Consensus 52 ~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 52 VRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 56677777765 599999999999999998776666656566788889998852 35789999999998765
No 207
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=70.21 E-value=3.3 Score=37.40 Aligned_cols=49 Identities=14% Similarity=0.390 Sum_probs=36.9
Q ss_pred ccccccchhhccCcccCC-CCccccHHHHHHHHhcC-CCCCCCCcccccCC
Q 012813 75 EFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAG-NRTCPRTQQVLSHT 123 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~-~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~~~ 123 (456)
-..|.+|.++..-=+.=+ |++.|-+.|+.+|+... ...||.|+.+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 346999998877433333 78999999999999753 46899999876543
No 208
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=69.62 E-value=15 Score=30.27 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=55.2
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc------CCHHHHHHHHHHHHHHh
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD------GTARAKRKATGILERLK 447 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~------~~~~~k~~A~~~L~~l~ 447 (456)
++..|.+-+++. ++.++..|+.+|-.+..+........+....++..|.+++.. .++.++++...++..-.
T Consensus 39 a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 356677777765 599999999999999998776665656556888888888763 36689999999988765
No 209
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=66.65 E-value=3 Score=30.00 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=27.4
Q ss_pred ccccccchhhccCcccCCCCccccHHHHHHHHhc
Q 012813 75 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA 108 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~ 108 (456)
..+||+|+..+....+.|+ ...+..|++|...
T Consensus 43 ~~~CP~C~~~~~~~~l~~n--~~l~~~i~~~~~~ 74 (78)
T 1t1h_A 43 HKTCPKSQETLLHAGLTPN--YVLKSLIALWCES 74 (78)
T ss_dssp CCBCTTTCCBCSSCCCEEC--TTTHHHHHHHHHH
T ss_pred cCCCCCCcCCCChhhCccC--HHHHHHHHHHHHH
Confidence 6789999999987777776 6689999999976
No 210
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=66.14 E-value=1.7e+02 Score=32.72 Aligned_cols=250 Identities=6% Similarity=-0.048 Sum_probs=129.6
Q ss_pred chhHHHHHHHHHHHhhc-----CchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchhHHHhc
Q 012813 177 LPDQTEAAKELRLLTKR-----MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAE 251 (456)
Q Consensus 177 ~~~~~~a~~~L~~L~~~-----~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 251 (456)
...+.-|+..|.+..+. +++.|..|.+ ..+..+...-... . .....++..++.++..++..+-- -.
T Consensus 61 ~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~--~ll~~l~~~~~~~-~--~~~~~vr~kla~~la~Ia~~d~p----~~ 131 (1204)
T 3a6p_A 61 AIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN--SVMELIANGTLNI-L--EEENHIKDALSRIVVEMIKREWP----QH 131 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH--HHHHHHHHSSCCT-T--SSCHHHHHHHHHHHHHHHHHHST----TT
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--HHHHHHHhhcccc-c--cccHHHHHHHHHHHHHHHHHhCc----cc
Confidence 45666777777776543 2344444444 2333333221100 0 12466777777777777655321 01
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccC---Ccc----ch-----hhcc--cCccHHHHhcccc-----------
Q 012813 252 TPMVIPLLMDALRSGTIETRSNAAAALFTLSAL---DSN----KE-----VIGK--SGALKPLIDLLDE----------- 306 (456)
Q Consensus 252 ~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~---~~~----~~-----~i~~--~G~i~~Lv~lL~~----------- 306 (456)
=+.+++.|+.++.+ +...+..+..+|..|+.. .+. +. .+.+ ..++..+..+|..
T Consensus 132 Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 132 WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 24578888888866 556677788888887642 111 11 1111 1233344444432
Q ss_pred --------CChhHHHHHHHHHHHhccCchhhHHHHhc--CcHHHHHHHHcCCchHHHHHHHHHHhhCC---HHHHHHHHh
Q 012813 307 --------GHQSAMKDVASAIFNLCITHENKARAVRD--GGVSVILKKIMDGVHVDELLAILAMLSTN---HRAVEEIGD 373 (456)
Q Consensus 307 --------~~~~~~~~a~~aL~~L~~~~~~~~~~v~~--g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~---~~~~~~i~~ 373 (456)
.+..+...++.++.+....-.. ..+.+. ..++.+..++.++.++..|+.+|..++.. ++.+..+..
T Consensus 211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~ 289 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMV 289 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGG
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHH
Confidence 1234566677777766554322 122333 26788888777888999999999999973 455444433
Q ss_pred h---CcHHHHHHHhhhc-----C--ChhHHHHHHHHHHHHhccChhhHHHHHH----------hhccHHHHHHHhhcCCH
Q 012813 374 L---GGVSCMLRIIRES-----T--CDRNKENCIAILHTICLSDRTKWKAMRE----------EESTHGTISKLAQDGTA 433 (456)
Q Consensus 374 ~---g~i~~Lv~ll~~~-----~--~~~~~~~A~~~L~~l~~~~~~~~~~~~~----------~~g~~~~L~~Ll~~~~~ 433 (456)
. .++..++..+... . +....+.-++++..++.. ...++. -.++++.+..+.++.+.
T Consensus 290 ~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~----l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~ 365 (1204)
T 3a6p_A 290 LFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ----LCALLGADSDVETPSNFGKYLESFLAFTTHPSQ 365 (1204)
T ss_dssp GGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH----HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCH
T ss_pred HHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH----HHHHHhccccccChhHHHHHHHHHHHHHhCccH
Confidence 2 1234455443210 1 133444555555555421 111111 02455666666665555
Q ss_pred HHHHHHHH
Q 012813 434 RAKRKATG 441 (456)
Q Consensus 434 ~~k~~A~~ 441 (456)
.+-..+..
T Consensus 366 ~vs~~~l~ 373 (1204)
T 3a6p_A 366 FLRSSTQM 373 (1204)
T ss_dssp HHHHHHHH
T ss_pred HhHHHHHH
Confidence 55444443
No 211
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=64.50 E-value=65 Score=35.65 Aligned_cols=216 Identities=13% Similarity=0.045 Sum_probs=123.6
Q ss_pred hhhHHHHHHHhcC-CchhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHcccc
Q 012813 163 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 241 (456)
Q Consensus 163 ~~~i~~Lv~~L~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~ 241 (456)
...+..++..+.+ +.+.+.+|-..|..+-+ + .++...+..+|.. +.++.++--|+.+|.+...
T Consensus 27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-s----------p~aw~~~~~iL~~-----s~~~~vR~fAa~~L~~~I~ 90 (1073)
T 3gjx_A 27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-H----------PDAWTRVDTILEF-----SQNMNTKYYGLQILENVIK 90 (1073)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-C----------SCHHHHHTCC--------CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-C----------chHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHH
Confidence 4567777877743 44556666666655444 2 5566666667754 3478899999999888744
Q ss_pred Cc------chhHHHhcCCCCHHHHHHHHhc-----CCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccCCh
Q 012813 242 HD------NNKKLVAETPMVIPLLMDALRS-----GTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQ 309 (456)
Q Consensus 242 ~~------~~~~~i~~~~~~i~~Lv~lL~~-----~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~ 309 (456)
.. +.+..+-. .++..+...-.. .++..+...+.++..+...+ ...+ ...++-|+.++.. ++
T Consensus 91 ~~W~~L~~e~~~~LR~--~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W----p~fi~dLv~~~~~-~~ 163 (1073)
T 3gjx_A 91 TRWKILPRNQCEGIKK--YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW----PTFISDIVGASRT-SE 163 (1073)
T ss_dssp HTGGGSCHHHHHHHHH--HHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHH-CH
T ss_pred hhhhhCCHHHHHHHHH--HHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc----cHHHHHHHHHhCC-CH
Confidence 22 23333322 133333333222 13555656666676666432 1111 3567777777754 45
Q ss_pred hHHHHHHHHHHHhccC--c-------hhh-----HHHHhcCcHHHHHHHH----cCC---chHHHHHHHHHHhhCCHHHH
Q 012813 310 SAMKDVASAIFNLCIT--H-------ENK-----ARAVRDGGVSVILKKI----MDG---VHVDELLAILAMLSTNHRAV 368 (456)
Q Consensus 310 ~~~~~a~~aL~~L~~~--~-------~~~-----~~~v~~g~v~~Lv~lL----~~~---~~~~~a~~~L~~L~~~~~~~ 368 (456)
......+..|..|+.. . ..| ..+.+ -++.++.++ ... .+...++.+|....+.-+ -
T Consensus 164 ~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i 240 (1073)
T 3gjx_A 164 SLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-L 240 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-T
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-H
Confidence 5667788888877653 1 011 12222 244444444 322 455667788888877522 1
Q ss_pred HHHHhhCcHHHHH-HHhhhcCChhHHHHHHHHHHHHhccC
Q 012813 369 EEIGDLGGVSCML-RIIRESTCDRNKENCIAILHTICLSD 407 (456)
Q Consensus 369 ~~i~~~g~i~~Lv-~ll~~~~~~~~~~~A~~~L~~l~~~~ 407 (456)
..+.+.+.++.|+ .++. ++..+..|+.+|..+....
T Consensus 241 ~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 241 GYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp HHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHSC
T ss_pred HHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhcc
Confidence 3466777777774 5553 4889999999999988753
No 212
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=64.22 E-value=81 Score=34.93 Aligned_cols=204 Identities=11% Similarity=-0.006 Sum_probs=114.3
Q ss_pred ChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccCC-----ccchhhcccCccH
Q 012813 225 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALD-----SNKEVIGKSGALK 298 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~aL~~Ls~~~-----~~~~~i~~~G~i~ 298 (456)
+++.+..|-..|..+-.++ ++...+..+|..+ ++.+|-.|+.+|.+..... +....-.+..++.
T Consensus 41 ~~~~r~qA~~~L~q~q~sp----------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~ 110 (1073)
T 3gjx_A 41 EGAQQRMAQEVLTHLKEHP----------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVG 110 (1073)
T ss_dssp SHHHHHHHHHHHHTSSCCS----------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCc----------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHH
Confidence 4566777777777665443 3444444555444 7899999999998876532 1111112223334
Q ss_pred HHHhcccc-----CChhHHHHHHHHHHHhccCc--hhhHHHHhcCcHHHHHHHHcCC-chHHHHHHHHHHhhCC-----H
Q 012813 299 PLIDLLDE-----GHQSAMKDVASAIFNLCITH--ENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLSTN-----H 365 (456)
Q Consensus 299 ~Lv~lL~~-----~~~~~~~~a~~aL~~L~~~~--~~~~~~v~~g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~~-----~ 365 (456)
.+...-.+ .++.++...+.++..+.... +.. .+.++-++.++..+ ...+..+.+|..|+.. .
T Consensus 111 ~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d~~~ 185 (1073)
T 3gjx_A 111 LIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSS 185 (1073)
T ss_dssp HHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34333222 13455666666666665432 222 24577777777643 4566677888777642 0
Q ss_pred -----H----HHHHHHhh--CcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHH-HHhhcCCH
Q 012813 366 -----R----AVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTIS-KLAQDGTA 433 (456)
Q Consensus 366 -----~----~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~-~Ll~~~~~ 433 (456)
. .++.+.+. -.+..+..++....++.....++.+|.....--+- ..++ +...++.|. .++ +++
T Consensus 186 ~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i--~~i~-~~~ll~~L~~~~L--~~~ 260 (1073)
T 3gjx_A 186 GQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL--GYIF-ETKLISTLIYKFL--NVP 260 (1073)
T ss_dssp HHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHH-SSSHHHHHHHHTS--SSH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH--HHhc-cchHHHHHHHHhc--CCh
Confidence 1 12333332 12333335555555577777888888888776542 2444 346666663 444 466
Q ss_pred HHHHHHHHHHHHHhc
Q 012813 434 RAKRKATGILERLKR 448 (456)
Q Consensus 434 ~~k~~A~~~L~~l~~ 448 (456)
..+..|...|..+-.
T Consensus 261 ~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 261 MFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 788889888887643
No 213
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=63.84 E-value=27 Score=38.66 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=67.9
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhcccc----CChhHHHHHHHHHHHhc----cC
Q 012813 254 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE----GHQSAMKDVASAIFNLC----IT 325 (456)
Q Consensus 254 ~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~----~~~~~~~~a~~aL~~L~----~~ 325 (456)
.++..+.+++.++.....+ |+.+|..+..... -....+..+..++.+ .++.+.+.++-++.+|. ..
T Consensus 356 ~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~-----Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~ 429 (1056)
T 1lsh_A 356 EALLFLKRTLASEQLTSAE-ATQIVASTLSNQQ-----ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN 429 (1056)
T ss_dssp HHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCC-----CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCC-----CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc
Confidence 3455566777766433332 3333322211111 122345666666654 35556666666666554 33
Q ss_pred chhhHHHHhcCcHHHHHHHHc----CCc--hHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhh------cCChhHH
Q 012813 326 HENKARAVRDGGVSVILKKIM----DGV--HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE------STCDRNK 393 (456)
Q Consensus 326 ~~~~~~~v~~g~v~~Lv~lL~----~~~--~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~------~~~~~~~ 393 (456)
...+. ...++.+.+.+. .++ -...++.+|.|+... ..++.|..++.. +...+++
T Consensus 430 ~~~c~----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr 495 (1056)
T 1lsh_A 430 TVSCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQ 495 (1056)
T ss_dssp CSSCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHH
T ss_pred CCCCC----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHH
Confidence 22221 133555555553 332 344466666666531 245666666542 1124567
Q ss_pred HHHHHHHHHHhccCh
Q 012813 394 ENCIAILHTICLSDR 408 (456)
Q Consensus 394 ~~A~~~L~~l~~~~~ 408 (456)
..|+.+|..++...+
T Consensus 496 ~aAi~ALr~~~~~~p 510 (1056)
T 1lsh_A 496 AEAIMALRNIAKRDP 510 (1056)
T ss_dssp HHHHHTTTTGGGTCH
T ss_pred HHHHHHHHHhhhhch
Confidence 778888888876554
No 214
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=62.75 E-value=32 Score=30.76 Aligned_cols=129 Identities=8% Similarity=0.012 Sum_probs=83.6
Q ss_pred HhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHc-CC--chHHHHHHHHHHhhC--CHHHHHHHHhhC
Q 012813 301 IDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM-DG--VHVDELLAILAMLST--NHRAVEEIGDLG 375 (456)
Q Consensus 301 v~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~-~~--~~~~~a~~~L~~L~~--~~~~~~~i~~~g 375 (456)
..|..++..+++-.|+.+|..+ ... ...++.+-..+. ++ .+++.+..++..+|. +++ .
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~~~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~ 139 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-SKD--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------K 139 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-TTS--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------T
T ss_pred HHHHhCcchHHHHHHHHHHHhc-cCc--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------H
Confidence 3444556678888888888877 211 124455555233 34 678888888888874 333 1
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 451 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~ 451 (456)
.++.+....++. +..+++.|...+.--+.. +.. +. ...-+++.|..+..+.+.-+++.-++.|+.++|+.+
T Consensus 140 ~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~-~~~-k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ALPIIDEWLKSS-NLHTRRAATEGLRIWTNR-PYF-KE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp THHHHHHHHHCS-SHHHHHHHHHHTCSGGGS-TTT-TT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHhhHHHhcc-chh-hc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 466777777755 599999988887643433 111 11 112345666667777788899999999999998755
No 215
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.61 E-value=21 Score=31.64 Aligned_cols=71 Identities=6% Similarity=0.101 Sum_probs=54.0
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLK 447 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~-~~~~k~~A~~~L~~l~ 447 (456)
++..|.+-|.+. ++.++..|+.+|-.+..+........+....++..|.+|+... ++.+|+++..+++...
T Consensus 46 a~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 355677777755 5999999999999998877665555555557778888887654 5679999999998765
No 216
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=60.43 E-value=2.6 Score=36.18 Aligned_cols=30 Identities=7% Similarity=0.222 Sum_probs=27.1
Q ss_pred ccccchhhccCcccCCCCccccHHHHHHHHhc
Q 012813 77 KCPLSKELMRDPVILASGQTFDRPYIQRWLKA 108 (456)
Q Consensus 77 ~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~ 108 (456)
+||+|++.+....++|+ ...|..|+.|+..
T Consensus 143 tcP~t~~~l~~~~L~pN--~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 143 FDPVTRSPLTQDQLIPN--LAMKEVIDAFIQE 172 (179)
T ss_dssp BCTTTCCBCCGGGCEEC--HHHHHHHHHHHHH
T ss_pred CCCCCcCCCChhhCcch--HHHHHHHHHHHHH
Confidence 79999999988888998 7799999999976
No 217
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=57.85 E-value=11 Score=36.78 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=63.6
Q ss_pred ChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHh--------cCCHHHHHHHHHHHHHhccCCc-cchhhcccC
Q 012813 225 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR--------SGTIETRSNAAAALFTLSALDS-NKEVIGKSG 295 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~--------~~~~~~~~~aa~aL~~Ls~~~~-~~~~i~~~G 295 (456)
.+..+--+++++.|+-.+......++........+++.+. ..+..++.+++.+++|++..-- .+.. ..
T Consensus 275 ~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---~e 351 (425)
T 3pst_A 275 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LE 351 (425)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---TT
T ss_pred ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HH
Confidence 5677888999999998888755555543223445555542 1245688899999999986421 1111 22
Q ss_pred ccHHHHhccc---------cCChhHHHHHHHHHHHhccCc
Q 012813 296 ALKPLIDLLD---------EGHQSAMKDVASAIFNLCITH 326 (456)
Q Consensus 296 ~i~~Lv~lL~---------~~~~~~~~~a~~aL~~L~~~~ 326 (456)
.+..+++++. ..+.++...++-||++|....
T Consensus 352 l~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 352 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 3344555554 247889999999999998543
No 218
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=57.31 E-value=34 Score=30.11 Aligned_cols=70 Identities=6% Similarity=0.070 Sum_probs=53.3
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Q 012813 377 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLK 447 (456)
Q Consensus 377 i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~-~~~~k~~A~~~L~~l~ 447 (456)
+..|.+-|.+. ++.++..|+.+|-.+..+.......-+....++..|.+++.+. +..+++++..+++.-.
T Consensus 44 ~r~l~krl~~~-n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSP-NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 55666667765 5999999999999999987665555554556888888887654 5679999998888765
No 219
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=56.32 E-value=3.4 Score=26.78 Aligned_cols=13 Identities=23% Similarity=0.782 Sum_probs=11.7
Q ss_pred CCCCccccccchh
Q 012813 71 SCPEEFKCPLSKE 83 (456)
Q Consensus 71 ~~p~~f~Cpi~~~ 83 (456)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5899999999985
No 220
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=55.15 E-value=40 Score=27.92 Aligned_cols=73 Identities=5% Similarity=0.067 Sum_probs=52.7
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHH-HHHHhhc-C--CHHHHHHHHHHHHHHhc
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT-ISKLAQD-G--TARAKRKATGILERLKR 448 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~-L~~Ll~~-~--~~~~k~~A~~~L~~l~~ 448 (456)
++..|.+-|++..++.++..|+.+|-.+..+........+....++.. |++++.. . ...+|+++..++..-..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 355677777643458899999999999998876665555545567776 7787742 2 35799999999887653
No 221
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=53.49 E-value=27 Score=29.47 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=21.5
Q ss_pred CCCCCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 70 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
++.+..+.||+|+.+..+ -+ ...||.|+.|-.
T Consensus 133 ~~~~~~~~C~~CG~i~~~--~~------------------p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 133 IEIKKVYICPICGYTAVD--EA------------------PEYCPVCGAPKE 164 (170)
T ss_dssp CCCSCEEECTTTCCEEES--CC------------------CSBCTTTCCBGG
T ss_pred CCCCCeeEeCCCCCeeCC--CC------------------CCCCCCCCCCHH
Confidence 345667889998887752 01 237999987643
No 222
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.24 E-value=5.3 Score=30.09 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=26.4
Q ss_pred ccccccchhh---ccCcccCCCCccccHHHHHHHHhc
Q 012813 75 EFKCPLSKEL---MRDPVILASGQTFDRPYIQRWLKA 108 (456)
Q Consensus 75 ~f~Cpi~~~~---m~dPv~l~~g~~~~r~~I~~~~~~ 108 (456)
.++||+++.. +..+.++|+ ...|..|+.|...
T Consensus 48 ~~~CP~tgc~~~~l~~~~L~pn--~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 48 KAYCPQIGCSHTDIRKSDLIQD--EALRRAIENHNKK 82 (94)
T ss_dssp CBCCCSTTCCCCCBCGGGEEEC--HHHHHHHHHHHTT
T ss_pred CCCCCcCcCcccccCHhhCcCC--HHHHHHHHHHHHH
Confidence 6889996654 777888897 6799999999976
No 223
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=51.90 E-value=11 Score=36.19 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=62.0
Q ss_pred ChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHh--------cCCHHHHHHHHHHHHHhccCCc-cchhhcccC
Q 012813 225 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR--------SGTIETRSNAAAALFTLSALDS-NKEVIGKSG 295 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~--------~~~~~~~~~aa~aL~~Ls~~~~-~~~~i~~~G 295 (456)
.+..+--+++++.|+-.+......++........+++.+. ..+..++.+++.+++|++..-. .+.. ..
T Consensus 212 ~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~e 288 (362)
T 3l3f_X 212 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LE 288 (362)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TT
T ss_pred ChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HH
Confidence 5677888999999998888754444433212233444331 1245688899999999986421 1111 22
Q ss_pred ccHHHHhccc---------cCChhHHHHHHHHHHHhccCc
Q 012813 296 ALKPLIDLLD---------EGHQSAMKDVASAIFNLCITH 326 (456)
Q Consensus 296 ~i~~Lv~lL~---------~~~~~~~~~a~~aL~~L~~~~ 326 (456)
....+++++. ..+.++...++-||++|....
T Consensus 289 l~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 289 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 3344555554 247889999999999998543
No 224
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=51.23 E-value=4.5 Score=27.17 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=12.2
Q ss_pred CCCCccccccchhh
Q 012813 71 SCPEEFKCPLSKEL 84 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~ 84 (456)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 59999999999854
No 225
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=50.79 E-value=1.6e+02 Score=27.37 Aligned_cols=147 Identities=8% Similarity=0.104 Sum_probs=96.4
Q ss_pred ccHHHHhccccC------ChhHHHHHHHHHHHhccCchhhHHHHhc--CcHHHHHHHHcCC-chHHHHHHHHHHhhCC-H
Q 012813 296 ALKPLIDLLDEG------HQSAMKDVASAIFNLCITHENKARAVRD--GGVSVILKKIMDG-VHVDELLAILAMLSTN-H 365 (456)
Q Consensus 296 ~i~~Lv~lL~~~------~~~~~~~a~~aL~~L~~~~~~~~~~v~~--g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~~-~ 365 (456)
.+..+..+++++ +......|+..|-.++-+-+--.++++. ..+..|+-....+ ..++.|..+|...-.+ |
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 455556666665 4456788888888888776655666653 3333333111223 5789999999988885 7
Q ss_pred HHHHHHHhh--CcHHHHHHHhhhc------CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC--CHHH
Q 012813 366 RAVEEIGDL--GGVSCMLRIIRES------TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARA 435 (456)
Q Consensus 366 ~~~~~i~~~--g~i~~Lv~ll~~~------~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~~~--~~~~ 435 (456)
...+.+.+. ..+..+..-|... .+...+..=+++|..|...+.. +. ...+..|.++...+ .+.+
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F~--~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----LP--IYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C----CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----hh--hccHHHHHHHHccCCCCHHH
Confidence 777777554 5566666444431 2346677778888888886521 11 24667888887777 8899
Q ss_pred HHHHHHHHHHHhc
Q 012813 436 KRKATGILERLKR 448 (456)
Q Consensus 436 k~~A~~~L~~l~~ 448 (456)
|.++..++..+-.
T Consensus 177 k~Kvl~li~d~f~ 189 (315)
T 3qml_C 177 QIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999999987653
No 226
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=50.41 E-value=5.4 Score=26.54 Aligned_cols=14 Identities=21% Similarity=0.790 Sum_probs=12.0
Q ss_pred CCCCCccccccchh
Q 012813 70 VSCPEEFKCPLSKE 83 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~ 83 (456)
.++|+++.||+|+.
T Consensus 31 ~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 31 EDLPDDWACPVCGA 44 (52)
T ss_dssp TSSCTTCCCSSSCC
T ss_pred HHCCCCCcCCCCCC
Confidence 35899999999985
No 227
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=50.01 E-value=12 Score=33.87 Aligned_cols=99 Identities=18% Similarity=0.181 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHHHccccCcc-hhHHHhcCCCCHHHHHHHHh--------cCCHHHHHHHHHHHHHhccCC-ccchhhccc
Q 012813 225 NPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALR--------SGTIETRSNAAAALFTLSALD-SNKEVIGKS 294 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv~lL~--------~~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~ 294 (456)
.+..+--+++++.|+-.++. .+..+... .....++..+. ..+..++.+++.+++|++..- ..+.. .
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~-~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~---~ 178 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVKLLESN-QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---L 178 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSH-HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC---T
T ss_pred chhHHHHHHHHHHHcccCCchHHHHHhcc-hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch---H
Confidence 56788889999999988888 45555432 22333444331 124578889999999998632 11111 1
Q ss_pred CccHHHHhccc---------cCChhHHHHHHHHHHHhccCch
Q 012813 295 GALKPLIDLLD---------EGHQSAMKDVASAIFNLCITHE 327 (456)
Q Consensus 295 G~i~~Lv~lL~---------~~~~~~~~~a~~aL~~L~~~~~ 327 (456)
.....+++++. ..+.++...++-||++|...+.
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 22233344333 1377888999999999986443
No 228
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=49.94 E-value=77 Score=34.68 Aligned_cols=214 Identities=8% Similarity=0.005 Sum_probs=112.9
Q ss_pred ChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCH-HHHHHHHHHHHHhccC--C-c--------c-----
Q 012813 225 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTI-ETRSNAAAALFTLSAL--D-S--------N----- 287 (456)
Q Consensus 225 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~-~~~~~aa~aL~~Ls~~--~-~--------~----- 287 (456)
..-++.+.+.+|..+....-. ..=+.+++-|+.++..++. ........+|..++.. + . .
T Consensus 103 ~~~IrnKL~~~la~l~~~~~p----~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~l 178 (980)
T 3ibv_A 103 PAYISNAVQHLLTLLFLQLYP----SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLV 178 (980)
T ss_dssp CTHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCc----ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHH
Confidence 456777777777776544310 0123467778888876543 3344444455533321 0 0 0
Q ss_pred chhhccc---CccHHHHhcccc----CChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCCchHHHHHHHHHH
Q 012813 288 KEVIGKS---GALKPLIDLLDE----GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAM 360 (456)
Q Consensus 288 ~~~i~~~---G~i~~Lv~lL~~----~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~a~~~L~~ 360 (456)
+..+.+. -+++....+|.. .++.+...++.+|......-+ -..+++.+.++.+.++|.++..++.|+.+|..
T Consensus 179 kd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~e 257 (980)
T 3ibv_A 179 KDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQIEELRCAACETMTE 257 (980)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1112111 113334444433 577888889999988877543 33455677899999999888899999999999
Q ss_pred hhC---CHHHHHHHHhhCcHHHHHHHhhh-cCChhHHHHHHHHHHHHhc------cCh-----h---hHHHHHHhhccHH
Q 012813 361 LST---NHRAVEEIGDLGGVSCMLRIIRE-STCDRNKENCIAILHTICL------SDR-----T---KWKAMREEESTHG 422 (456)
Q Consensus 361 L~~---~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~A~~~L~~l~~------~~~-----~---~~~~~~~~~g~~~ 422 (456)
+.. .++.+..++..=.+...+..+.. ..+....+.-++++..++. ..+ + .....+ .+.++
T Consensus 258 i~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l--~~ll~ 335 (980)
T 3ibv_A 258 IVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL--YNLFP 335 (980)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH--HHTHH
T ss_pred HHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH--HHHHH
Confidence 876 35665555443111222211221 2234444433333332221 111 1 111122 25677
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHH
Q 012813 423 TISKLAQDGTARAKRKATGILER 445 (456)
Q Consensus 423 ~L~~Ll~~~~~~~k~~A~~~L~~ 445 (456)
.+.......++++-..+...+..
T Consensus 336 ~lL~~~~~~~deVs~~t~~Fw~~ 358 (980)
T 3ibv_A 336 YLIRYLSDDYDETSTAVFPFLSD 358 (980)
T ss_dssp HHHHHHTCSSHHHHHTTHHHHHH
T ss_pred HHHHHhCCCchhHHHHHHHHHHH
Confidence 77777777766665554444443
No 229
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=49.17 E-value=1.8e+02 Score=32.50 Aligned_cols=121 Identities=11% Similarity=0.013 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHhhcCchhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccccC------cchhHHHhc
Q 012813 178 PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH------DNNKKLVAE 251 (456)
Q Consensus 178 ~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~------~~~~~~i~~ 251 (456)
..+.+|-..|..+... .++...+...|.+. +.+..++--|+.+|.+.... ++.+..+-
T Consensus 28 ~~r~~Ae~~L~~~~~~-----------p~~~~~~~~~L~~~----s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir- 91 (1204)
T 3a6p_A 28 RYRLEALKFCEEFKEK-----------CPICVPCGLRLAEK----TQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK- 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-----------CTTHHHHHHHHTST----TSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhC-----------chHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-
Confidence 4577777777766552 22222333323211 44678888888888876432 22333332
Q ss_pred CCCCHHHHHHHHhc-------CCHHHHHHHHHHHHHhccCC-ccchhhcccCccHHHHhccccCChhHHHHHHHHHHHhc
Q 012813 252 TPMVIPLLMDALRS-------GTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 323 (456)
Q Consensus 252 ~~~~i~~Lv~lL~~-------~~~~~~~~aa~aL~~Ls~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 323 (456)
..|+..+.+ .+..++...+.++..++..+ .... .+.++.|++++.+ +....+.++.+|..|+
T Consensus 92 -----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~ 161 (1204)
T 3a6p_A 92 -----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVMFILLRLA 161 (1204)
T ss_dssp -----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 224444432 34677777787888877543 1111 4678888888865 5566788888988886
Q ss_pred c
Q 012813 324 I 324 (456)
Q Consensus 324 ~ 324 (456)
.
T Consensus 162 E 162 (1204)
T 3a6p_A 162 E 162 (1204)
T ss_dssp H
T ss_pred H
Confidence 4
No 230
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=48.97 E-value=5.6 Score=36.32 Aligned_cols=31 Identities=6% Similarity=0.216 Sum_probs=26.9
Q ss_pred cccccchhhccCcccCCCCccccHHHHHHHHhc
Q 012813 76 FKCPLSKELMRDPVILASGQTFDRPYIQRWLKA 108 (456)
Q Consensus 76 f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~ 108 (456)
.+||+|++.+....++|+ ...|..|++|+..
T Consensus 244 ~~cP~~~~~~~~~~l~~n--~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 244 HFNPVTRSPLTQEQLIPN--LAMKEVIDAFISE 274 (281)
T ss_dssp SSCTTTCCCCCGGGCEEC--HHHHHHHHHHHTT
T ss_pred CCCcCCCCCCchhcCccc--HHHHHHHHHHHHH
Confidence 349999999988788887 6799999999986
No 231
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=45.56 E-value=1.4e+02 Score=26.56 Aligned_cols=143 Identities=13% Similarity=0.037 Sum_probs=85.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHh-ccccCChhHHHHHHHHHHHhcc-CchhhHHH
Q 012813 255 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID-LLDEGHQSAMKDVASAIFNLCI-THENKARA 332 (456)
Q Consensus 255 ~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~~ 332 (456)
.++....+.++...++|..|+.+|..+ . ....+++.+.. +-.+.+=.+++.++.++..++. .+..+
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 345445566677789999999888777 2 11235566666 3334566899999999999875 22211
Q ss_pred HhcCcHHHHHHHHcCCc--hHHHHHHHHHHhhCCHHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhh
Q 012813 333 VRDGGVSVILKKIMDGV--HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK 410 (456)
Q Consensus 333 v~~g~v~~Lv~lL~~~~--~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~ 410 (456)
.++.+.....+++ ++..|...+.--|..+.- -.+..-+-.++.-+..+.+.-+|..-...|..++..+|+-
T Consensus 140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 5677777777763 444444433221221100 0011112233333444555778888999999999999876
Q ss_pred HHHHHH
Q 012813 411 WKAMRE 416 (456)
Q Consensus 411 ~~~~~~ 416 (456)
....+.
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 232
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=45.10 E-value=6.4 Score=26.19 Aligned_cols=13 Identities=31% Similarity=0.922 Sum_probs=11.7
Q ss_pred CCCCccccccchh
Q 012813 71 SCPEEFKCPLSKE 83 (456)
Q Consensus 71 ~~p~~f~Cpi~~~ 83 (456)
++|+++.||+|+.
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 233
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=44.68 E-value=7.2 Score=28.57 Aligned_cols=15 Identities=20% Similarity=0.581 Sum_probs=12.6
Q ss_pred CCCCCccccccchhh
Q 012813 70 VSCPEEFKCPLSKEL 84 (456)
Q Consensus 70 ~~~p~~f~Cpi~~~~ 84 (456)
.++|+++.||+|+--
T Consensus 55 edlPddW~CPvCga~ 69 (81)
T 2kn9_A 55 DDIPDDWSCPDCGAA 69 (81)
T ss_dssp TTSCTTCCCTTTCCC
T ss_pred hHCCCCCcCCCCCCC
Confidence 359999999999864
No 234
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=44.44 E-value=6.5 Score=26.50 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=12.0
Q ss_pred CCCCccccccchhh
Q 012813 71 SCPEEFKCPLSKEL 84 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~ 84 (456)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 32 DIPADWVCPDCGVG 45 (55)
T ss_dssp GSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 48999999999853
No 235
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=44.36 E-value=29 Score=31.48 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=44.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccCChhHHHHHHHHHHH
Q 012813 255 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 321 (456)
Q Consensus 255 ~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~ 321 (456)
+++.++.+..+.+.++|+-.+..|...+..+. -.-..+++.|..+|.++++.+.+.+..+..+
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQVIKRVIQACGS 116 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 56666666556678999999999988874321 1223467888888888888888887665443
No 236
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=42.40 E-value=12 Score=33.64 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=34.4
Q ss_pred CCChhhHHHHHHHHHccccCcchhHHHhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHh
Q 012813 223 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID 302 (456)
Q Consensus 223 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~ 302 (456)
+.++.++..++..+ . .+.|..+++++++.+|..++..| ..+.|..
T Consensus 157 D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~ 201 (244)
T 1lrv_A 157 DEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL-----------------RGDDLLE 201 (244)
T ss_dssp CSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC-----------------CGGGGGG
T ss_pred CCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC-----------------CHHHHHH
Confidence 56788888887741 1 12233455666777777766542 1244555
Q ss_pred ccccCChhHHHHHHHH
Q 012813 303 LLDEGHQSAMKDVASA 318 (456)
Q Consensus 303 lL~~~~~~~~~~a~~a 318 (456)
++.+.+..++..++..
T Consensus 202 Ll~D~d~~VR~~aa~~ 217 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEH 217 (244)
T ss_dssp GGGCSSHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHc
Confidence 5555555555555443
No 237
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=41.44 E-value=68 Score=26.24 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=56.5
Q ss_pred hhhHHHHHHHhc-CCchhHHHHHHHHHHHhhcC-chhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 163 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 163 ~~~i~~Lv~~L~-~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
..+++.+.+.|. .++.++..|+..|-.+.+.. ...+..++. ..++..|+.++.........++.+++.++..|..-+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAK-FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 567778888885 46888999999998888863 456777777 789999999887421000246889999988887654
No 238
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=41.39 E-value=7.7 Score=27.57 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=12.6
Q ss_pred CCCCccccccchhhc
Q 012813 71 SCPEEFKCPLSKELM 85 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~m 85 (456)
++|+++.||+|+.-=
T Consensus 36 ~lPddw~CP~Cga~K 50 (70)
T 1dx8_A 36 DLSDSFMCPACRSPK 50 (70)
T ss_dssp GSCTTCBCTTTCCBG
T ss_pred hCCCCCcCCCCCCCH
Confidence 589999999998643
No 239
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=39.62 E-value=7.3 Score=29.23 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=34.1
Q ss_pred ccccccchhhccCcccCCCCccc-cHHHHHHHHhcCCCCCCCCcccccCC
Q 012813 75 EFKCPLSKELMRDPVILASGQTF-DRPYIQRWLKAGNRTCPRTQQVLSHT 123 (456)
Q Consensus 75 ~f~Cpi~~~~m~dPv~l~~g~~~-~r~~I~~~~~~~~~~~P~~~~~l~~~ 123 (456)
-+-|--|..-.+ -++.|..+| |+.|+..-+.. +..||+|+.+|...
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 356777765544 567666566 99999988876 67899999998653
No 240
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.50 E-value=48 Score=27.93 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=56.2
Q ss_pred hhhHHHHHHHhc-CCchhHHHHHHHHHHHhhcC-chhhhhhhccCCchhhhhhccccccccCCCChhhHHHHHHHHHccc
Q 012813 163 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 240 (456)
Q Consensus 163 ~~~i~~Lv~~L~-~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls 240 (456)
..+++.|.+.+. .++.++..|+..|-.+.+.. ...+..++. ..++..|+.++.........+..+++.++..|..-+
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGK-FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456778888885 45788999999998888863 346777777 788999999886321111346889999998887654
No 241
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=39.08 E-value=31 Score=27.99 Aligned_cols=70 Identities=9% Similarity=0.072 Sum_probs=52.8
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccCCcc--chhhcccCccHHHHhccccCChhHHHHHHHHHHHhcc
Q 012813 255 VIPLLMDALRSGTIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 324 (456)
Q Consensus 255 ~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~~--~~~i~~~G~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 324 (456)
++..|.+-|.++++..+..|..+|-.+..+... ...|.....+..|++++...++.++...+..+...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 456677888888988888888877777664432 4456666788888888877788899999888886654
No 242
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=38.38 E-value=77 Score=26.34 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=49.7
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhcc
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 406 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 406 (456)
++..|.+.|..+ ..+-.|+.+|..+..+ ..-..++.....+..|+.++....++.+++.++.++..-+..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 445566666644 5666788888888774 556667777778888888887534588999999988766543
No 243
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=37.38 E-value=9.9 Score=28.22 Aligned_cols=14 Identities=21% Similarity=0.620 Sum_probs=12.2
Q ss_pred CCCCccccccchhh
Q 012813 71 SCPEEFKCPLSKEL 84 (456)
Q Consensus 71 ~~p~~f~Cpi~~~~ 84 (456)
++|+++.||+|+.-
T Consensus 64 dlPddW~CPvCga~ 77 (87)
T 1s24_A 64 DIPDDWCCPDCGAT 77 (87)
T ss_dssp GCCTTCCCSSSCCC
T ss_pred HCCCCCCCCCCCCC
Confidence 69999999999853
No 244
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=37.14 E-value=2.6e+02 Score=25.93 Aligned_cols=133 Identities=10% Similarity=0.024 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHhhcCchhhhhhhc-cCCchhhhhhccccccccCCCChhhHHHHHHHHHccccCcchh-HHHh-cCCCC
Q 012813 179 DQTEAAKELRLLTKRMPSFRALFGE-SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK-KLVA-ETPMV 255 (456)
Q Consensus 179 ~~~~a~~~L~~L~~~~~~~r~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~-~~~~~ 255 (456)
.-..|+..|..++-+ .+.-..|.+ .-..+..|+ +.. ...+.+++.|+++|...-.+.+.. ..+. ..+.+
T Consensus 44 ~le~aLD~L~ElSHD-i~~G~KI~~~ef~lL~nL~-~~~------~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~f 115 (315)
T 3qml_C 44 RLEDSFDRIMEFAHD-YKHGYKIITHEFALLANLS-LNE------NLPLTLRELSTRVITSCLRNNPPVVEFINESFPNF 115 (315)
T ss_dssp HHHHHHHHHGGGTTS-HHHHHHHHHHHHHHHHHHH-HCT------TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHhhhh-HHhhhHHHhCcHHHHHHHH-hhc------cCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhH
Confidence 445777788888773 443333433 123333333 112 235678999999998876666532 2222 23344
Q ss_pred HHHHHHHHhc-------CCHHHHHHHHHHHHHhccCCccchhhcccCccHHHHhccccC--ChhHHHHHHHHHHHhc
Q 012813 256 IPLLMDALRS-------GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAIFNLC 323 (456)
Q Consensus 256 i~~Lv~lL~~-------~~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~ 323 (456)
+..+..-|.. .....++.-+++|..|..+. ..+ ...++..|.+++... ++.++..++..+..+-
T Consensus 116 v~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~---~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 116 KSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS---EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS---TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh---Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 4444433332 23456666777888887765 222 234567888887766 7888888877776554
No 245
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=35.23 E-value=82 Score=27.72 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=51.0
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhcc
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 406 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 406 (456)
++..|.+-|..+ ..+-.|+.+|..+..+ ..-..+|.....+..|++++....++.+++.++.++...+..
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 455566666654 5677788888888874 445667766677778888887655588999999998877654
No 246
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.06 E-value=15 Score=29.05 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=40.2
Q ss_pred CCCccccccchhhccC---cccCCCCccccHHHHHHHHhcCCCCCCCCcccccCCCC
Q 012813 72 CPEEFKCPLSKELMRD---PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTIL 125 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~d---Pv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l 125 (456)
-|+.|+|..|+..+.| ......|..||+.+-.+-+.. ...|..|++++....+
T Consensus 29 H~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 29 HSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp CHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred HhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 3567999999999974 445668999999998887653 2379889888875443
No 247
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.78 E-value=77 Score=27.72 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=50.0
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhhCcHHHHHHHhhhcCChhHHHHHHHHHHHHhcc
Q 012813 337 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 406 (456)
Q Consensus 337 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 406 (456)
++..|.+-|..+ ..+..|+.+|..+..+ +.-..++.+...+..|+.++....+..+++.++.++..-+..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 445556666654 5677788888888875 445567766667888888887655588999988888776643
No 248
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.69 E-value=20 Score=25.19 Aligned_cols=23 Identities=39% Similarity=0.788 Sum_probs=19.5
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHHH
Q 012813 3 KTGIFDSDPTVMPKATELKKELQKLVRL 30 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (456)
|-||=.+||..+|+ +|...|++.
T Consensus 39 kLGI~ktdP~~LT~-----eEi~~FaRL 61 (71)
T 2eo2_A 39 KLGIHKTDPSTLTE-----EEVRKFARL 61 (71)
T ss_dssp HHTCCCCSTTTCCH-----HHHHHHHHT
T ss_pred HcCCCCCCcccCCH-----HHHhhceec
Confidence 56898899999998 788888764
No 249
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=30.15 E-value=49 Score=24.50 Aligned_cols=47 Identities=17% Similarity=0.344 Sum_probs=33.7
Q ss_pred ccccccchhhcc-----CcccCC--CCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 75 EFKCPLSKELMR-----DPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 75 ~f~Cpi~~~~m~-----dPv~l~--~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
.-.|.||++-.- +|-+.. |+...||.|.+.-..+++..||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 357888885421 122222 56667999999888888999999988775
No 250
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=29.39 E-value=86 Score=25.76 Aligned_cols=72 Identities=6% Similarity=0.104 Sum_probs=49.8
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHH-HHHHHhhc---CCHHHHHHHHHHHHHHh
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHG-TISKLAQD---GTARAKRKATGILERLK 447 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~-~L~~Ll~~---~~~~~k~~A~~~L~~l~ 447 (456)
++..|.+-+..+.++.++..|+.+|-.+..+........+....++. .|.+++.. ....+|++...++....
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 35667766764445778888999999988887765555554445554 36666643 23479999999998876
No 251
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=29.15 E-value=1.1e+02 Score=24.83 Aligned_cols=72 Identities=8% Similarity=0.168 Sum_probs=46.9
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhh--------cC-C--HHHHHHHHHHHHH
Q 012813 377 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ--------DG-T--ARAKRKATGILER 445 (456)
Q Consensus 377 i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~Ll~--------~~-~--~~~k~~A~~~L~~ 445 (456)
+..|.+-|... ++..+-+|+.+|..|+.+..+.+..-+.. -...+..+.+ .| + ..++.+|..++..
T Consensus 51 m~~L~kRL~~k-~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~--~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 51 SEFILKRLDNK-SPIVKQKALRLIKYAVGKSGSEFRREMQR--NSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHH--TTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CcceeehHHHHHHHHHHhCCHHHHHHHHH--hHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 45566666654 58899999999999998776654444332 1123333321 22 1 3589999999999
Q ss_pred Hhcchh
Q 012813 446 LKRTVN 451 (456)
Q Consensus 446 l~~~~~ 451 (456)
|.....
T Consensus 128 l~d~~~ 133 (140)
T 1vdy_A 128 IFSEEN 133 (140)
T ss_dssp HTCCSS
T ss_pred HhCcCC
Confidence 876543
No 252
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=28.86 E-value=13 Score=20.39 Aligned_cols=12 Identities=25% Similarity=0.880 Sum_probs=9.5
Q ss_pred cccccchhhccC
Q 012813 76 FKCPLSKELMRD 87 (456)
Q Consensus 76 f~Cpi~~~~m~d 87 (456)
..||+|.+.|--
T Consensus 7 vqcpvcqq~mpa 18 (29)
T 3vhs_A 7 VQCPVCQQMMPA 18 (29)
T ss_dssp EECTTTCCEEEG
T ss_pred eeChHHHHhCcH
Confidence 469999998854
No 253
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=28.79 E-value=63 Score=26.48 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=53.7
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccCCc--cchhhcccCccHHHHhcccc------CChhHHHHHHHHHHHhcc
Q 012813 255 VIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLIDLLDE------GHQSAMKDVASAIFNLCI 324 (456)
Q Consensus 255 ~i~~Lv~lL~~~~~~~~~~aa~aL~~Ls~~~~--~~~~i~~~G~i~~Lv~lL~~------~~~~~~~~a~~aL~~L~~ 324 (456)
++..|.+-|.++++.++..|..+|-.+..+-. -...|.....+..|++++.. .+..++...+..|..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 45667788888999999999988888776543 34567777888999999863 467888888888887654
No 254
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=28.66 E-value=1.1e+02 Score=25.15 Aligned_cols=74 Identities=14% Similarity=0.226 Sum_probs=53.9
Q ss_pred hhhHHHHHHHhc--CCchhHHHHHHHHHHHhhcC-chhhhhhhccCCchhh-hhhccccccccCCCChhhHHHHHHHHHc
Q 012813 163 RDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQ-LLSPLSESKCENGINPNLQEDVITTLLN 238 (456)
Q Consensus 163 ~~~i~~Lv~~L~--~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~~g~i~~-Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ 238 (456)
..+++.|.+.|+ .++.++..|+..|-.+.+.. ...+..++. ...+.. |+.++.... ..+..+++.++..|..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~-~~fl~e~Lvk~~~~k~---~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVAS-QDFVESVLVRTILPKN---NPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHTHHHHSTTT---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhh-HHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHH
Confidence 567888888896 35778899999998888864 456667777 688887 788875221 2345788888888876
Q ss_pred cc
Q 012813 239 LS 240 (456)
Q Consensus 239 Ls 240 (456)
-+
T Consensus 128 W~ 129 (157)
T 1elk_A 128 WA 129 (157)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 255
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=28.45 E-value=15 Score=39.74 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=27.8
Q ss_pred cccccchhhccCcccCCCCccccHHHHHHHHhc
Q 012813 76 FKCPLSKELMRDPVILASGQTFDRPYIQRWLKA 108 (456)
Q Consensus 76 f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~ 108 (456)
-+||+|++.+..-.++|+ .-.|..|++|+..
T Consensus 927 ~tdP~Tr~~L~~~~liPN--~~Lk~~I~~w~~~ 957 (968)
T 3m62_A 927 STDPFNRMPLKLEDVTPN--EELRQKILCFKKQ 957 (968)
T ss_dssp CBCTTTCCBCCGGGCEEC--HHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCccccccc--HHHHHHHHHHHHH
Confidence 379999999998889997 6799999999975
No 256
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=27.25 E-value=21 Score=25.84 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=33.3
Q ss_pred cccccchhhccCc------ccCCCCc-cc-cHHHHHHHHhcCCCCCCCCcccccCCCCcc
Q 012813 76 FKCPLSKELMRDP------VILASGQ-TF-DRPYIQRWLKAGNRTCPRTQQVLSHTILTP 127 (456)
Q Consensus 76 f~Cpi~~~~m~dP------v~l~~g~-~~-~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~ 127 (456)
-.||||+..+.=- ..+.++. .+ ||.....-+.+-...||.|++.+-...|-.
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~ 68 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPR 68 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCCh
Confidence 4699999776422 1233432 33 888777777664567999998876555443
No 257
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=25.10 E-value=5.1e+02 Score=25.63 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=96.3
Q ss_pred hHHHHHHHHHccccCcc-hhHHHhcCCCCHHHHHHHH-hcC-----CHHHHHHHHHHHHHhccCCccchhhcccCccHHH
Q 012813 228 LQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDAL-RSG-----TIETRSNAAAALFTLSALDSNKEVIGKSGALKPL 300 (456)
Q Consensus 228 ~~~~a~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv~lL-~~~-----~~~~~~~aa~aL~~Ls~~~~~~~~i~~~G~i~~L 300 (456)
..+.+.-.|...+..+. +... .++.+-++| .++ +++........+...+..++--+.+ -++.|
T Consensus 52 Lie~~~LnL~~~t~~~~~~~~~------ll~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~Fd~VLevy----sve~i 121 (500)
T 3vld_A 52 LLRKCSLNLVTVVSLPDMDVKP------LLATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMADFDDVLEVY----SAEDL 121 (500)
T ss_dssp HHHHHHHHHHHSCSCCSCCCHH------HHHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSCHHHHHHHS----CHHHH
T ss_pred HHHHHhhcchhcccCCcccHHH------HHHHHHHHHcCCccccccCHHHHHHHHHHHHhcCCHHHHHHhC----CHHHH
Confidence 34445555555554443 2222 344566666 331 3556666666666666555443333 46888
Q ss_pred HhccccCChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcCC----c-hHHHHHHHHHHhhCCHHHHHHHHhhC
Q 012813 301 IDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----V-HVDELLAILAMLSTNHRAVEEIGDLG 375 (456)
Q Consensus 301 v~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~~----~-~~~~a~~~L~~L~~~~~~~~~i~~~g 375 (456)
+.-|.++++.+...|+..+. ...-+..+...+.+..|++++.+. . +....=.++..|+++.=.|..+.+.
T Consensus 122 ~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~n- 196 (500)
T 3vld_A 122 VKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLFDN- 196 (500)
T ss_dssp HHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHTT-
T ss_pred HHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHHH-
Confidence 88898888999999999998 444566677789999999999875 2 3333334555666666566666554
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHHHHHh
Q 012813 376 GVSCMLRIIRESTCDRNKENCIAILHTIC 404 (456)
Q Consensus 376 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~ 404 (456)
..+ ++.-+++..++....+-...|.-+.
T Consensus 197 nl~-lL~~vK~~~~~i~~sRLLdll~il~ 224 (500)
T 3vld_A 197 NLP-YLVSVKGRMETVSFVRLIDFLTIEF 224 (500)
T ss_dssp THH-HHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHhcCCCceeHHHHHHHHHHHh
Confidence 343 4444444333555555555555553
No 258
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=24.92 E-value=3.2e+02 Score=23.27 Aligned_cols=153 Identities=16% Similarity=0.214 Sum_probs=89.2
Q ss_pred HHHHhccccC-ChhHHHHHHHHHHHhccCchhhHHHHhcCcHHHHHHHHcC------C----chHHHHHHHHHHhhCCHH
Q 012813 298 KPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD------G----VHVDELLAILAMLSTNHR 366 (456)
Q Consensus 298 ~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~v~~g~v~~Lv~lL~~------~----~~~~~a~~~L~~L~~~~~ 366 (456)
.-|.++|+.. +.++.....-..+. ++-.-...++..|++.-|+..-.. . +-...|+.+|..+-..++
T Consensus 69 kyladllktrddmdllnemvvvfrs--ssvsfiktfvsvgglanlmaiykkkieaensntaideerkccevlryvfaeed 146 (353)
T 4dvg_B 69 KYLADLLKTRDDMDLLNEMVVVFRS--SSVSFIKTFVSVGGLANLMAIYKKKIEAENSNTAIDEERKCCEVLRYVFAEED 146 (353)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHH--SCHHHHHHHHHTSTHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhccchHHHhhhheEEEec--cchhHHHHHhhhccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHhccc
Confidence 4567777764 44444444433332 223345667888998888876541 1 334569999999888877
Q ss_pred HHHHHHhh-CcHHHHHHHhhhcCChhHHHHHHHHHHHHhc------cCh--------h-----hHHHHHHh----hccHH
Q 012813 367 AVEEIGDL-GGVSCMLRIIRESTCDRNKENCIAILHTICL------SDR--------T-----KWKAMREE----ESTHG 422 (456)
Q Consensus 367 ~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~------~~~--------~-----~~~~~~~~----~g~~~ 422 (456)
..-++++- ||+..|++=|.+. ..+-.+-+.+|..+.- ++. . ....++.+ -.++.
T Consensus 147 atvalieidggvelllkgmnsk--ritpdnqldilleitltssmvehpsqeglylggdvcvmnafsnlvsegvdmkkfls 224 (353)
T 4dvg_B 147 ATVALIEIDGGVELLLKGMNSK--RITPDNQLDILLEITLTSSMVEHPSQEGLYLGGDVCVMNAFSNLVSEGVDMKKFLS 224 (353)
T ss_dssp HHHHHHTSTTHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHCSBCTTSTTCBCCHHHHHHHHHHHHHHTTSCSSTTHH
T ss_pred ceEEEEEecccHHHHhcccccC--cCCCccccceeeeEeehhhhhcCccccceeecCceeeehhhHHHHhccccHHHHHH
Confidence 77777764 8899888777642 2233444555554431 111 0 01111211 01222
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhcchhccC
Q 012813 423 TISKLAQDGTARAKRKATGILERLKRTVNLTH 454 (456)
Q Consensus 423 ~L~~Ll~~~~~~~k~~A~~~L~~l~~~~~~~~ 454 (456)
.+.-...+.++.-+.....++.|+-..+++.|
T Consensus 225 ffslfsksksekfkhaslvlinnlidqpeleh 256 (353)
T 4dvg_B 225 FFSLFSKSKSEKFKHASLVLINNLIDQPELEH 256 (353)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHhhhhhhhcccceeehhhccccchhhHh
Confidence 23333466688888888888889888777655
No 259
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.79 E-value=43 Score=26.37 Aligned_cols=50 Identities=12% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCCccccccchhhccC---cccCCCCccccHHHHHHHHhcCCCCCCCCcccccC
Q 012813 72 CPEEFKCPLSKELMRD---PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 122 (456)
Q Consensus 72 ~p~~f~Cpi~~~~m~d---Pv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 122 (456)
-|+.|.|..++..+.+ +.....|..|++.+-.+-+.. ...|+.+++++..
T Consensus 26 H~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 26 HEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp ETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred cHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 3678999999999863 456668999999988776643 2379999988865
No 260
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=22.60 E-value=1.1e+02 Score=18.92 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=25.4
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHHHHh
Q 012813 3 KTGIFDSDPTVMPKATELKKELQKLVRLIV 32 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (456)
|.-|++.+|+...+..++...++++.+-.+
T Consensus 3 ~~~~~pp~p~~F~s~~~l~~YL~~LneYya 32 (40)
T 1k8v_A 3 KDFIVNPSDLVLDNKAALRDYLRQINEYFA 32 (40)
T ss_dssp CSCSSCSTTCSCSSCSHHHHHHHHHHHHHH
T ss_pred cccCCCCChhhcCCHHHHHHHHHHHHHHHH
Confidence 556888999999999999999998887654
No 261
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.34 E-value=75 Score=27.16 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=9.2
Q ss_pred ccccccchhhcc
Q 012813 75 EFKCPLSKELMR 86 (456)
Q Consensus 75 ~f~Cpi~~~~m~ 86 (456)
.+.|++|+.+..
T Consensus 155 ~~~C~~CG~~~~ 166 (191)
T 1lko_A 155 KWRCRNCGYVHE 166 (191)
T ss_dssp EEEETTTCCEEE
T ss_pred eEEECCCCCEee
Confidence 588999887764
No 262
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.09 E-value=1.8e+02 Score=25.00 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=19.6
Q ss_pred CCccccccchhhccCcccCCCCccccHHHHHHHHhcCCCCCCCCccccc
Q 012813 73 PEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 121 (456)
Q Consensus 73 p~~f~Cpi~~~~m~dPv~l~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 121 (456)
...+.|++|+-+.. . ..| ..||+|+.+-.
T Consensus 169 ~~~~~C~~CG~i~~-g-~~p------------------~~CP~C~~~k~ 197 (202)
T 1yuz_A 169 DKFHLCPICGYIHK-G-EDF------------------EKCPICFRPKD 197 (202)
T ss_dssp CCEEECSSSCCEEE-S-SCC------------------SBCTTTCCBGG
T ss_pred CcEEEECCCCCEEc-C-cCC------------------CCCCCCCCChH
Confidence 45788999887754 2 111 47999987643
No 263
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=20.81 E-value=93 Score=27.92 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHHHHhccCCc-cchhhcccCccHHHHhcc----cc----CChhHHHHHHHHHHHhccC
Q 012813 265 SGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLL----DE----GHQSAMKDVASAIFNLCIT 325 (456)
Q Consensus 265 ~~~~~~~~~aa~aL~~Ls~~~~-~~~~i~~~G~i~~Lv~lL----~~----~~~~~~~~a~~aL~~L~~~ 325 (456)
++++..+.-+++++.|+-.++. .+..+........++..+ .+ .+..++-.++.+++|++..
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~ 170 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSAL 170 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH
Confidence 4567888999999999988877 566665543334444433 21 2566788889999999874
No 264
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=20.61 E-value=64 Score=23.30 Aligned_cols=43 Identities=21% Similarity=0.445 Sum_probs=28.2
Q ss_pred CccccccchhhccCcccCCC----CccccHHHHHHHHh----cCCCCCCCC
Q 012813 74 EEFKCPLSKELMRDPVILAS----GQTFDRPYIQRWLK----AGNRTCPRT 116 (456)
Q Consensus 74 ~~f~Cpi~~~~m~dPv~l~~----g~~~~r~~I~~~~~----~~~~~~P~~ 116 (456)
..++|.+|.+-+.|--.+.| +|.||-.|-...+. .+.-.||..
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 35899999999999876643 78887555544443 223346653
Done!