BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012814
(456 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PPRA + N+ +V++V+ +++PG+L E+ LSDL L I A+I++ G +D F+V
Sbjct: 833 PPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYV 892
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D G+KI I I L
Sbjct: 893 TDLTGQKIDSPARIATIRNRL 913
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 96 DYIEKALGPKGHITAGAKTW---PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANL 152
+ IEK PK GAK + P ++ + IE+ G DRPGLLSEI+ L++L
Sbjct: 815 EMIEKRTKPK----RGAKVFKIPPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDL 870
Query: 153 RFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEK 210
++A+A + T ++ YV D T + + R++ + +L L G E K
Sbjct: 871 SLDIASAHITTFGEKVIDTFYVT-DLTGQKIDSPARIATIRNRLMATLEGIAPERGGK 927
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 337 AAIRRRVSEGLS-LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDA 395
A IR +S S +E+ DR GLLSE+T L + L + A ++T GE+ ++ FYV D
Sbjct: 836 AEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDL 895
Query: 396 SGNPVD 401
+G +D
Sbjct: 896 TGQKID 901
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGE 327
+SV+ V+ DR L+ +I TL+D+ + A I++ G +Y+ + G +D+
Sbjct: 846 FSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPAR 905
Query: 328 ----KERVIKCLEA 337
+ R++ LE
Sbjct: 906 IATIRNRLMATLEG 919
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 10 DPEYESLSLRIN----PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITK 65
D + S S R+ PPR +DN++ TV++V+ ++PG+L +V LS L I+
Sbjct: 839 DASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISS 898
Query: 66 AYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102
A+I++ G +DVF+V D G KITD + + + L
Sbjct: 899 AHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETL 935
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 33/223 (14%)
Query: 4 AYWPYFDPEYESLSLRI--------NPPRASVDNSSCPE--CTVVKVDSVNKPGILLEVV 53
+YW FD + + R+ +P +V+ PE T + V + PG+ ++
Sbjct: 716 SYWLGFDTDTQMRHARMVHDSDRYRSP--VTVEAYPIPERGVTELTVLCADHPGLFSQIA 773
Query: 54 QVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITD----GKTIDYIEKALGPKGHI 108
L+ I A I + G +D F V D +G + G+ +E+AL + I
Sbjct: 774 GALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLGRLNHLVEQALSGRLDI 833
Query: 109 TAG--------------AKTWPSKQVGVHSVGD-HTAIELIGRDRPGLLSEISAVLANLR 153
G A P + V ++ D HT IE+ GRDRPGLL ++++ L++
Sbjct: 834 RKGIEDASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSAS 893
Query: 154 FNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196
+++A + T+ R V YV D + + D RL+ + E L
Sbjct: 894 LQISSAHITTYGMRAVDVFYVRDLLGMK-ITDPVRLARLRETL 935
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 44/224 (19%)
Query: 245 ADQVDHTPSFKPEITVER--LEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS 302
A V + ++ +TVE + ++G + + V C D L I L + A I
Sbjct: 730 ARMVHDSDRYRSPVTVEAYPIPERGVTELTVLCADHPGLFSQIAGALAVSGASIVDARIH 789
Query: 303 --SDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--VSEGLS---------- 348
SDG A ++++ +GC + + R+ +E A+ R + +G+
Sbjct: 790 TLSDG-MALDTFWVQDGEGCSFEEPHQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRR 848
Query: 349 ----------------------LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQA 386
+E+ +DR GLL +VT L L ++ A ++T G +A
Sbjct: 849 MRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRA 908
Query: 387 VNVFYVRDASGNPVDMKTIEALR-KEIGHTMLFNVKKVPASRSA 429
V+VFYVRD G MK + +R + T+L ++ P + A
Sbjct: 909 VDVFYVRDLLG----MKITDPVRLARLRETLLASLTSAPVTTPA 948
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP + NS + TV++V+ +++PG+L E+ VLSDL L I A I++ G +D F+V
Sbjct: 825 PPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 884
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D G+KI++ YI L
Sbjct: 885 ADLVGQKISNENRRAYITARL 905
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
T IE+ DRPGLLSEI+AVL++L ++ +A + T ++ YV D + + ++ R
Sbjct: 839 TVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA-DLVGQKISNENR 897
Query: 189 LSLMEEQLKNILRGCDDEDSEKV 211
+ + +LK ++ G +DE E++
Sbjct: 898 RAYITARLKAVMAGEEDEMRERM 920
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
+E+ DR GLLSE+T +L + L + A ++T GE+ ++ FYV D G +
Sbjct: 841 IEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADLVGQKI 892
Score = 35.8 bits (81), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 256 PEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR 315
P + + ++V+ V+C DR L+ +I L+D+ + A I++ G +Y+
Sbjct: 826 PSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA 885
Query: 316 HMDGCILDTEGEKERVIKCLEAAI 339
+ G + E + + L+A +
Sbjct: 886 DLVGQKISNENRRAYITARLKAVM 909
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP ++ NS + TV++V+ +++PG+L E+ VLSDL L I A I++ G +D F+V
Sbjct: 824 PPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 883
Query: 82 IDQQGKKIT 90
D G+KI+
Sbjct: 884 TDLVGQKIS 892
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 116 PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN 175
PS + T IE+ DRPGLLSEI+AVL++L ++ +A + T ++ YV
Sbjct: 825 PSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVT 884
Query: 176 DDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKV 211
D + GD R ++ ++K ++ +DE E++
Sbjct: 885 DLVGQKISGDSKRANIT-ARMKAVMAEEEDELRERM 919
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
+E+ DR GLLSE+T +L + L + A ++T GE+ ++ FYV D G +
Sbjct: 840 IEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKI 891
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/84 (19%), Positives = 40/84 (47%)
Query: 256 PEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR 315
P + + ++V+ V+C DR L+ +I L+D+ + A I++ G +Y+
Sbjct: 825 PSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVT 884
Query: 316 HMDGCILDTEGEKERVIKCLEAAI 339
+ G + + ++ + ++A +
Sbjct: 885 DLVGQKISGDSKRANITARMKAVM 908
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PPR +DN++ TV++V+ ++PG+L ++ + L++L L I+ A IS+ G +DVF+V
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D G K+T + I + L
Sbjct: 904 KDVFGLKVTHENKLAQIRERL 924
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 62 IITKAYISSDGGWFMDVFHVIDQQG-----------------KKITDG--KTIDYIEKAL 102
I+ + G +DVF V D G +K+ G K + + K
Sbjct: 772 IVDARIFTMTNGMALDVFTVQDAAGGGAFESGDKLAKLSVMIEKVLSGQLKPLHDLTKRK 831
Query: 103 GPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162
P T P + ++ HT IE+ GRDRPGLL +++ L NL +++A++
Sbjct: 832 APHASRTRVFHVPPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS 891
Query: 163 THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200
T+ + V YV D + V + +L+ + E+L + L
Sbjct: 892 TYGEKAIDVFYVKDVFGLK-VTHENKLAQIRERLLHAL 928
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKT-IEA 407
+E+ +DR GLL ++TR L L ++ A +ST GE+A++VFYV+D G V + +
Sbjct: 860 IEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDVFGLKVTHENKLAQ 919
Query: 408 LRKEIGHTM 416
+R+ + H +
Sbjct: 920 IRERLLHAL 928
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 247 QVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP 306
+V H P P + ++ ++V+ V RDR L++D+ LT++ + A IS+ G
Sbjct: 839 RVFHVP---PRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGE 895
Query: 307 HASQEYYIRHMDGCILDTEGE----KERVIKCL 335
A +Y++ + G + E + +ER++ L
Sbjct: 896 KAIDVFYVKDVFGLKVTHENKLAQIRERLLHAL 928
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
+E+ DR GLLSE+T ++ + L + A ++T GE+ ++ FYV D G+ + T +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQG- 907
Query: 409 RKEIGHTMLFNVKKVPASRSAYKEPEAS 436
I +L + +R+ + P+A+
Sbjct: 908 --NIKRKLLALLGAENGARTNGRSPQAA 933
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
+E+ DR GLLSE+T ++ + L + A ++T GE+ ++ FYV D G+ + T +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQG- 907
Query: 409 RKEIGHTMLFNVKKVPASRSAYKEPEAS 436
I +L + +R+ + P+A+
Sbjct: 908 --NIKRKLLALLGAENGARTNGRSPQAA 933
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
+E+ DR GLLSE+T ++ + L + A ++T GE+ ++ FYV D G+ + T +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQG- 907
Query: 409 RKEIGHTMLFNVKKVPASRSAYKEPEAS 436
I +L + +R+ + P+A+
Sbjct: 908 --NIKRKLLALLGAENGARTNGRSPQAA 933
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
+E+ DR GLLSE+T ++ + L + A ++T GE+ ++ FYV D G+ + T +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQG- 907
Query: 409 RKEIGHTMLFNVKKVPASRSAYKEPEAS 436
I +L + +R+ + P+A+
Sbjct: 908 --NIKRKLLALLGAENGARTNGRSPQAA 933
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
+E+ DR GLLSE+T ++ + L + A ++T GE+ ++ FYV D G+ + T +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQG- 907
Query: 409 RKEIGHTMLFNVKKVPASRSAYKEPEAS 436
I +L + +R+ + P+A+
Sbjct: 908 --NIKRKLLALLGAENGARTNGRSPQAA 933
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
+E+ DR GLLSE+T ++ + L + A ++T GE+ ++ FYV D G+ + T +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQG- 907
Query: 409 RKEIGHTMLFNVKKVPASRSAYKEPEAS 436
I +L + +R+ + P+A+
Sbjct: 908 --NIKRKLLALLGAENGARTNGRSPQAA 933
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
+E+ DR GLLSE+T ++ + L + A ++T GE+ ++ FYV D G+ + T +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQG- 907
Query: 409 RKEIGHTMLFNVKKVPASRSAYKEPEAS 436
I +L + +R+ + P+A+
Sbjct: 908 --NIKRKLLALLGAENGARTNGRSPQAA 933
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D G KI++ I++ L GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DMLAKRTKPKKAARA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+A+A + T ++ YV D
Sbjct: 874 IASAHITTFGEKVIDSFYVTD 894
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
+E+ DR GLLSE+T ++ + L + A ++T GE+ ++ FYV D G+ + T +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQG- 907
Query: 409 RKEIGHTMLFNVKKVPASRSAYKEPEAS 436
I +L + +R+ + P+A+
Sbjct: 908 --NIKRKLLALLGAENGARTNGRSPQAA 933
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR ++N+ + TV++V+ +++PG+L E+ ++SDL L I A+I++ G +D F+V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DQQGKKITDGKTIDYIEKAL-----GPKGHITAG 111
D G KI++ I + L G G T G
Sbjct: 894 DLVGHKISNATRQGNIRRKLLGVLSGENGSKTNG 927
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
D + K PK A K P ++ T IE+ G DRPGLLSE++ ++++L +
Sbjct: 815 DVLAKRTKPKRAAKA-FKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLD 873
Query: 156 VAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202
+A+A + T ++ YV D + + TR + +L +L G
Sbjct: 874 IASAHITTFGEKVIDSFYVT-DLVGHKISNATRQGNIRRKLLGVLSG 919
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 321 ILDTEGEKERVIKCLEAAIRRRVSEGLS-----LELCAKDRVGLLSEVTRILRENGLSVT 375
+L + +R K + R ++ LS +E+ DR GLLSE+T ++ + L +
Sbjct: 816 VLAKRTKPKRAAKAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIA 875
Query: 376 RAGVSTVGEQAVNVFYVRDASGNPVDMKT 404
A ++T GE+ ++ FYV D G+ + T
Sbjct: 876 SAHITTFGEKVIDSFYVTDLVGHKISNAT 904
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++ N+ + TV++V+ +++ G+L EV VLSDL L I A+I++ G +D F+V
Sbjct: 831 PEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 83 DQQGKKIT 90
D G KIT
Sbjct: 891 DLVGSKIT 898
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
T IE+ G DR GLLSE++AVL++L ++A+A + T ++ YV D + + +
Sbjct: 844 TVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSENRQ 903
Query: 189 LSLMEEQLKNILRGCDDEDSEKV 211
+++ +LK +L G DE E++
Sbjct: 904 MNIA-ARLKAVLAGEVDEARERM 925
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
+E+ DR GLLSEVT +L + L + A ++T GE+ ++ FYV D G+ +
Sbjct: 846 IEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKI 897
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 43/91 (47%)
Query: 256 PEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR 315
PE+T+ ++V+ V+ DR L+ ++ L+D+ + A I++ G +Y+
Sbjct: 831 PEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 316 HMDGCILDTEGEKERVIKCLEAAIRRRVSEG 346
+ G + +E + + L+A + V E
Sbjct: 891 DLVGSKITSENRQMNIAARLKAVLAGEVDEA 921
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++ N+ + TV++V+ +++ G+L EV VLSDL L I A+I++ G +D F+V
Sbjct: 831 PEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 83 DQQGKKIT 90
D G KIT
Sbjct: 891 DLVGSKIT 898
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
T IE+ G DR GLLSE++AVL++L ++A+A + T ++ YV D + + +
Sbjct: 844 TVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSENRQ 903
Query: 189 LSLMEEQLKNILRGCDDEDSEKV 211
+++ +LK +L G DE E++
Sbjct: 904 MNIA-ARLKAVLAGEVDEARERM 925
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
+E+ DR GLLSEVT +L + L + A ++T GE+ ++ FYV D G+ +
Sbjct: 846 IEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKI 897
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 43/91 (47%)
Query: 256 PEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR 315
PE+T+ ++V+ V+ DR L+ ++ L+D+ + A I++ G +Y+
Sbjct: 831 PEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 316 HMDGCILDTEGEKERVIKCLEAAIRRRVSEG 346
+ G + +E + + L+A + V E
Sbjct: 891 DLVGSKITSENRQMNIAARLKAVLAGEVDEA 921
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++ NS + TV++++ +++ G+L EV VL+DL L I A I++ G +D F+VI
Sbjct: 826 PHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVI 885
Query: 83 DQQGKKITD 91
D G+KIT+
Sbjct: 886 DLVGQKITN 894
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
+E+ DR+GLL+EVT +L + L + A ++T GE+ ++ FYV D G +
Sbjct: 841 IEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVIDLVGQKI 892
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
T IE+ DR GLL+E++AVLA+L ++ +A + T ++ YV D + + ++ R
Sbjct: 839 TVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVI-DLVGQKITNENR 897
Query: 189 LSLMEEQLKNILRGCDDEDSEKV 211
+ +LK ++ DE E++
Sbjct: 898 QGSISVRLKAVMSEQPDELREQM 920
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 47/103 (45%)
Query: 243 TTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS 302
T + + T + KP +T+ ++V+ ++C DR L+ ++ L D+ + A I+
Sbjct: 813 TKGRKRNKTFTVKPHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARIT 872
Query: 303 SDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
+ G +Y+ + G + E + + L+A + + E
Sbjct: 873 TFGEKVIDTFYVIDLVGQKITNENRQGSISVRLKAVMSEQPDE 915
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PPR VDN + TV++++ ++PG L V + L+D+ + I+ A +S+ G +D F+V
Sbjct: 825 PPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYV 884
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D G KI + I +AL
Sbjct: 885 KDVFGMKIVHRAKLAQIREAL 905
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 37/205 (18%)
Query: 4 AYWPYFDP----EYESLSLRINPPRASVDNSSCPE----CTVVKVDSVNKPGILLEVV-- 53
AYW FD + + R +V P+ + V V + + PG+ ++
Sbjct: 687 AYWLTFDSATHLRHARMLRRARDAGLTVAVEVLPDPERAVSEVLVATDDHPGLFSKIAGA 746
Query: 54 QVLSDLDLIITKAYISSDGGWFMDVF-------HVIDQQ------GKKITDGKTIDY-IE 99
L+ ++++ K SDGG +D+F H I+++ K + D T D +E
Sbjct: 747 MALAGVNILDAKITTMSDGG-ALDIFTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLE 805
Query: 100 KAL---GPK-----GHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLAN 151
KAL P+ H+T P V + HT IE+ GRDRPG L ++ L +
Sbjct: 806 KALRRQPPRLPERTRHLTVP----PRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTD 861
Query: 152 LRFNVAAAEVWTHNRRIACVLYVND 176
+ +++A V T+ R+ YV D
Sbjct: 862 VAVQISSARVSTYGERVVDSFYVKD 886
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 32/214 (14%)
Query: 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196
D PGL S+I+ +A N+ A++ T + A ++ A+ + R++ + + +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEGHAIEKEERIARLAKTV 794
Query: 197 KNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKP 256
+++L G D EK R RL ++ H + P
Sbjct: 795 RDVLTG--DLPLEKALRRQPP--------RL-----------------PERTRHL-TVPP 826
Query: 257 EITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH 316
+ V+ K ++V+ + RDR ++ + LTD+ + A +S+ G +Y++
Sbjct: 827 RVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKD 886
Query: 317 MDGCILDTEGEKERVIKCLEAAIR----RRVSEG 346
+ G + + ++ + LEAAI R+V EG
Sbjct: 887 VFGMKIVHRAKLAQIREALEAAITQTVPRKVEEG 920
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
+E+ +DR G L VTR L + + ++ A VST GE+ V+ FYV+D G +
Sbjct: 841 IEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKDVFGMKI 892
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P +DN + TVV+ ++PG+L + + +SD L I A+I G +D F+V+
Sbjct: 831 PAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYVV 890
Query: 83 DQQGKKITDGK 93
D G+K+TD +
Sbjct: 891 DADGRKLTDAR 901
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
+E +DR GLL+ + R + + GLS+ A + GE+AV+ FYV DA G +
Sbjct: 846 VEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYVVDADGRKL 897
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 44 NKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKIT--DGKTIDYIEK 100
++P + +++ + ++ + A + +S G +DVF+V D G+ D + + + +
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDASGQPFGSHDPRALARLAE 800
Query: 101 ALG-----------PK-----GHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSE 144
L P+ G A A T P+ + + T +E GRDRPGLL+
Sbjct: 801 TLACAARGEPVAREPRKPQDLGRTAAFAIT-PAVMLDNEASETSTVVEASGRDRPGLLAA 859
Query: 145 ISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176
++ +++ ++ +A + + R YV D
Sbjct: 860 LARTISDAGLSILSAHIDGYGERAVDAFYVVD 891
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 355 DRVGLLSEVTRILRENGLSVTRAGVSTV-GEQAVNVFYVRDASGNPVDMKTIEALRKEIG 413
DR L ++ + G +V A V T QA++VFYV+DASG P AL + +
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDASGQPFGSHDPRALAR-LA 799
Query: 414 HTMLFNVKKVPASRSAYK 431
T+ + P +R K
Sbjct: 800 ETLACAARGEPVAREPRK 817
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP ++ N + TV++V+ +++PG+L ++ V++DL L I A I++ G +D F+V
Sbjct: 826 PPSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYV 885
Query: 82 IDQQGKKITD 91
D G+K+T+
Sbjct: 886 TDLFGQKVTN 895
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
T IE+ DRPGLL++++AV+A+L ++ +A + T ++ YV D + V + R
Sbjct: 840 TVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVT-DLFGQKVTNDNR 898
Query: 189 LSLMEEQLKNILRGCDDE 206
+ + ++LK ++ +DE
Sbjct: 899 QASIAQRLKAVMSEQEDE 916
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 343 VSEGLS-----LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASG 397
+S GLS +E+ DR GLL+++T ++ + L + A ++T GE+ ++ FYV D G
Sbjct: 831 ISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVTDLFG 890
Query: 398 NPV 400
V
Sbjct: 891 QKV 893
Score = 36.6 bits (83), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 41/87 (47%)
Query: 253 SFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEY 312
+ P +T+ ++V+ V+C DR L+ D+ + D+ + A I++ G +
Sbjct: 824 TIPPSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTF 883
Query: 313 YIRHMDGCILDTEGEKERVIKCLEAAI 339
Y+ + G + + + + + L+A +
Sbjct: 884 YVTDLFGQKVTNDNRQASIAQRLKAVM 910
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P +++N TV++V +++PG+L E+ +S L+L I A++++ G DVF+V
Sbjct: 836 PEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 895
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHITAGAK 113
D G +I I+ AL H+ AG K
Sbjct: 896 DLLGAQINAPTRQSAIKSAL---THVMAGDK 923
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187
+T IE+ G DRPGLL E++ ++ L N+A+A V T R V YV D + + T
Sbjct: 848 YTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQ-INAPT 906
Query: 188 RLSLMEEQLKNILRG 202
R S ++ L +++ G
Sbjct: 907 RQSAIKSALTHVMAG 921
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIE-A 407
+E+ DR GLL E+T + + L++ A V+T GE+A +VFYV D G ++ T + A
Sbjct: 851 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPTRQSA 910
Query: 408 LRKEIGHTMLFNVKKVPAS 426
++ + H M + PA+
Sbjct: 911 IKSALTHVMAGDKAVQPAA 929
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/82 (18%), Positives = 38/82 (46%)
Query: 254 FKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYY 313
+PE+T+ Y+V+ V DR L++++ ++ + + A +++ G A +Y
Sbjct: 834 IEPEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFY 893
Query: 314 IRHMDGCILDTEGEKERVIKCL 335
+ + G ++ + + L
Sbjct: 894 VTDLLGAQINAPTRQSAIKSAL 915
>sp|Q5NPH0|GLND_ZYMMO [Protein-PII] uridylyltransferase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=glnD PE=3
SV=1
Length = 926
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDG 92
+ T++ + +++ PG + + I A I ++ G MD V + QG I G
Sbjct: 734 DATMISLYAIDHPGFFYRISGAIHATGGNILDARIHTTRDGMAMDNLLVQNSQGGMIKSG 793
Query: 93 KTIDYIEKAL--GPKGHITAGAKT--------WPSKQVGVHSV--------GDHTAIELI 134
+ ++ + +A+ HI + K W K V + T IE+
Sbjct: 794 EHLNRMMQAIEDAATSHIRSSNKLAALRPPLFWRGKAFHVEPLVFIDNQASDRFTVIEVN 853
Query: 135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEE 194
+DRP LL ++ L N R +++A + T+ R V YV+D + + + +Q RL +E+
Sbjct: 854 AQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVSDLFSHK-ITNQNRLKAIEK 912
Query: 195 QL 196
+L
Sbjct: 913 RL 914
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P +DN + TV++V++ ++P +L ++ L + L I+ A+I++ G +DVF+V
Sbjct: 835 PLVFIDNQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVS 894
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D KIT+ + IEK L
Sbjct: 895 DLFSHKITNQNRLKAIEKRL 914
Score = 38.9 bits (89), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV-DMKTIEA 407
+E+ A+DR LL ++ L L+++ A ++T GE+AV+VFYV D + + + ++A
Sbjct: 850 IEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVSDLFSHKITNQNRLKA 909
Query: 408 LRKEI 412
+ K +
Sbjct: 910 IEKRL 914
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 255 KPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYI 314
+P + ++ ++V+ V +DR L+ D+ C L + + + A I++ G A +Y+
Sbjct: 834 EPLVFIDNQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYV 893
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 19 RINP----PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGW 74
R+ P P+ V+N TV++V +++PG+L ++ +S L+L I A++++ G
Sbjct: 829 RLRPFVVEPKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGER 888
Query: 75 FMDVFHVIDQQGKKITDGKTIDYIEKAL 102
DVF+V D G +IT I++AL
Sbjct: 889 ARDVFYVTDLLGARITAPTRQAAIKRAL 916
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187
HT IE+ G DRPGLL +++A ++ L N+A+A V T R V YV D R + T
Sbjct: 849 HTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDLLGAR-ITAPT 907
Query: 188 RLSLMEEQLKNIL 200
R + ++ L ++L
Sbjct: 908 RQAAIKRALIHLL 920
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIE-A 407
+E+ DR GLL ++T + + L++ A V+T GE+A +VFYV D G + T + A
Sbjct: 852 IEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDLLGARITAPTRQAA 911
Query: 408 LRKEIGHTM 416
+++ + H +
Sbjct: 912 IKRALIHLL 920
>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain
ymp) GN=glnD PE=3 SV=1
Length = 899
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LEL A DR GLL+ + RI E LS+ A ++T+GE+ +VF+V DA+ P+
Sbjct: 817 LELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANNQPL 868
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 53 VQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKITDG----KTI--DYIEKALGPK 105
V +S L+L I A I+S + +D + V+D G I D K I IE P
Sbjct: 722 VAAMSQLNLNIHDARIITSTSQFTLDTYVVLDADGGSIGDNPARIKQIREGLIEALKNPD 781
Query: 106 GHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + QV +H+ T +EL DRPGLL+ I + +
Sbjct: 782 EYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+ A++ T R+ V +V D
Sbjct: 842 LQNAKIATLGERVEDVFFVTD 862
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 39/69 (56%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P+ ++ N + T++++ + ++PG+L + ++ + DL + A I++ G DVF V
Sbjct: 802 PQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVT 861
Query: 83 DQQGKKITD 91
D + ++D
Sbjct: 862 DANNQPLSD 870
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 19 RINP----PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGW 74
R+ P P+ +++N T+++V +++PG+L ++ +S L+L I A++++ G
Sbjct: 827 RLRPFVVEPKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGER 886
Query: 75 FMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
DVF+V D G +IT I++AL H+ A T
Sbjct: 887 ARDVFYVTDLLGARITAPTRQAAIKRAL---VHLLASGNT 923
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187
HT IE+ G DRPGLL +++ ++ L N+A+A V T R V YV D R + T
Sbjct: 847 HTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAR-ITAPT 905
Query: 188 RLSLMEEQLKNIL 200
R + ++ L ++L
Sbjct: 906 RQAAIKRALVHLL 918
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIE-A 407
+E+ DR GLL ++T + + L++ A V+T GE+A +VFYV D G + T + A
Sbjct: 850 IEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGARITAPTRQAA 909
Query: 408 LRKEIGHTM 416
+++ + H +
Sbjct: 910 IKRALVHLL 918
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++N+ TV++V +++PG+L ++ +S L+L I A++++ G DVF+V
Sbjct: 835 PEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVT 894
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D G +IT I++AL
Sbjct: 895 DLLGAQITAPTRQAAIKRAL 914
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 116 PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN 175
P ++ + +T IE+ G DRPGLL +++ ++ L N+A+A V T R V YV
Sbjct: 835 PEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVT 894
Query: 176 DDTTCRAVGDQTRLSLMEEQLKNILRGCD 204
D + + TR + ++ L ++L D
Sbjct: 895 DLLGAQ-ITAPTRQAAIKRALVHLLANGD 922
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIE-A 407
+E+ DR GLL ++T + + L++ A V+T GE+A +VFYV D G + T + A
Sbjct: 850 IEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQITAPTRQAA 909
Query: 408 LRKEIGHTM 416
+++ + H +
Sbjct: 910 IKRALVHLL 918
>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis
(strain HTCC2594) GN=glnD PE=3 SV=1
Length = 919
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
PR DN + TV++V++ ++ +L + + L + +I+ A+I++ G D F+V
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVT 884
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D G KITD +D I +AL
Sbjct: 885 DLTGAKITDESRMDTIRQAL 904
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 19/180 (10%)
Query: 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGK 93
T+V V + + PG+ + + I A I ++ GW +D + V D G+ + +
Sbjct: 726 ATLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEER 785
Query: 94 TIDYIEKALGP----KGHITAGAKTWPSKQ--VGVHSV-----------GDHTAIELIGR 136
+ IE+A+ +G + P KQ G V G T IE+ R
Sbjct: 786 QLARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPRVLFDNDASGRFTVIEVNAR 845
Query: 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196
DR LL+ + L + V +A + + R A YV D T + + D++R+ + + L
Sbjct: 846 DRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDLTGAK-ITDESRMDTIRQAL 904
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV-DMKTIEA 407
+E+ A+DR LL+ + R L EN + V A ++ GE+A + FYV D +G + D ++
Sbjct: 840 IEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDLTGAKITDESRMDT 899
Query: 408 LRKEI 412
+R+ +
Sbjct: 900 IRQAL 904
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 33/209 (15%)
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
T + +I D PGL I+ + N+ A + T A Y+ D + ++ +
Sbjct: 727 TLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEERQ 786
Query: 189 LSLMEEQLKNIL--RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTAD 246
L+ +E+ + + + RG E K+A+ R L Q T A
Sbjct: 787 LARIEQAIADAIANRG---ELVPKLAK-----------RPLKQ-------------TRAG 819
Query: 247 QVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP 306
D +P + + ++V+ V RDRA L+ + L + Q +V A I++ G
Sbjct: 820 AFD----VRPRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGE 875
Query: 307 HASQEYYIRHMDGCILDTEGEKERVIKCL 335
A+ +Y+ + G + E + + + L
Sbjct: 876 RAADTFYVTDLTGAKITDESRMDTIRQAL 904
>sp|Q48F57|GLND_PSE14 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=glnD PE=3 SV=1
Length = 898
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LEL A DR GLL+ + +I E LS+ A ++T+GE+ +VF++ DA+ +P+
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPL 867
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 53 VQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKITDG-KTIDYIEKAL-----GPK 105
V + L+L I A I+S + +D + V+D +G I D + + I L P
Sbjct: 721 VAAMDQLNLNIHDARIITSSSKFTLDTYIVLDNEGGSIGDNPERVQEIRNGLTEALRNPD 780
Query: 106 GHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + QV +H+ T +EL+ DRPGLL+ I + +
Sbjct: 781 DYPTIIKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLS 840
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+ A++ T R+ V ++ D
Sbjct: 841 LQNAKIATLGERVEDVFFITD 861
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 43/80 (53%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P+ ++ N + TV+++ + ++PG+L + ++ + DL + A I++ G DVF +
Sbjct: 801 PQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFIT 860
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D ++D + ++ A+
Sbjct: 861 DANNHPLSDPQLCSQLQDAI 880
>sp|Q4ZWT0|GLND_PSEU2 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=glnD PE=3 SV=1
Length = 898
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LEL A DR GLL+ + +I E LS+ A ++T+GE+ +VF++ DA+ +P+
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPL 867
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 53 VQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKI-TDGKTIDYIEKAL-----GPK 105
V + L+L I A I+S + +D + V+D +G I + + I I + L P
Sbjct: 721 VAAMDQLNLNIHDARIITSSSKFTLDTYIVLDHEGGSIGNNPERIQDIREGLTEALRNPD 780
Query: 106 GHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + QV +H+ T +EL+ DRPGLL+ I + +
Sbjct: 781 DYPTIIKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLS 840
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+ A++ T R+ V ++ D
Sbjct: 841 LQNAKIATLGERVEDVFFITD 861
Score = 39.7 bits (91), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 43/80 (53%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P+ ++ N + TV+++ + ++PG+L + ++ + DL + A I++ G DVF +
Sbjct: 801 PQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFIT 860
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D ++D + ++ A+
Sbjct: 861 DANNHPLSDPQLCRQLQDAI 880
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P S++N TV++V +++PG+L E+ +S L+L I A++++ G DVF+V
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D G +I I+ AL
Sbjct: 897 DLLGAQINAPTRQAAIKSAL 916
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187
+T IE+ G DRPGLL E++ ++ L N+A+A V T R V YV D + + T
Sbjct: 849 YTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQ-INAPT 907
Query: 188 RLSLMEEQLKNILRGCDDEDSEKVA 212
R + ++ L ++L DD ++ A
Sbjct: 908 RQAAIKSALLHLL-ASDDTAAQPAA 931
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEA 407
+E+ DR GLL E+T + + L++ A V+T GE+A +VFYV D G ++ T +A
Sbjct: 852 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPTRQA 910
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 37/71 (52%)
Query: 253 SFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEY 312
S +PE+++ + Y+V+ V DR L++++ ++ + + A +++ G A +
Sbjct: 834 SVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVF 893
Query: 313 YIRHMDGCILD 323
Y+ + G ++
Sbjct: 894 YVTDLLGAQIN 904
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P S++N TV++V +++PG+L E+ +S L+L I A++++ G DVF+V
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D G +I I+ AL
Sbjct: 897 DLLGAQINAPTRQAAIKSAL 916
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187
+T IE+ G DRPGLL E++ ++ L N+A+A V T R V YV D + + T
Sbjct: 849 YTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQ-INAPT 907
Query: 188 RLSLMEEQLKNILRGCD 204
R + ++ L ++L D
Sbjct: 908 RQAAIKSALLHLLASED 924
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEA 407
+E+ DR GLL E+T + + L++ A V+T GE+A +VFYV D G ++ T +A
Sbjct: 852 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPTRQA 910
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 37/71 (52%)
Query: 253 SFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEY 312
S +PE+++ + Y+V+ V DR L++++ ++ + + A +++ G A +
Sbjct: 834 SVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVF 893
Query: 313 YIRHMDGCILD 323
Y+ + G ++
Sbjct: 894 YVTDLLGAQIN 904
>sp|Q886P5|GLND_PSESM [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=glnD PE=3 SV=1
Length = 898
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LEL A DR GLL+ + +I E LS+ A ++T+GE+ +VF++ DA+ P+
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNQPL 867
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 45/80 (56%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P+ ++ N + TV+++ + ++PG+L + ++ + DL + A I++ G DVF +
Sbjct: 801 PQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFIT 860
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D + ++D + +++A+
Sbjct: 861 DANNQPLSDPQLCSQLQEAI 880
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 25/145 (17%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQG----------KKITDGKTIDYIEKA 101
V + L+L I A I + F +D + V+D +G + I DG T E
Sbjct: 721 VAAMDQLNLNIHDARIITSSSQFTLDTYIVLDHEGGSIGNNPERIQDIRDGLT----EAL 776
Query: 102 LGPKGHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLAN 151
P + T + P + QV +H+ T +EL+ DRPGLL+ I +
Sbjct: 777 RNPDDYPTIIKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLE 836
Query: 152 LRFNVAAAEVWTHNRRIACVLYVND 176
++ A++ T R+ V ++ D
Sbjct: 837 FDLSLQNAKIATLGERVEDVFFITD 861
>sp|A5UBF9|GLND_HAEIE [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
PittEE) GN=glnD PE=3 SV=1
Length = 863
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 32/173 (18%)
Query: 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAI--SSDGPHASQEYYIRHMDGCILDT 324
G + V + C+D+ L +V T+ ++ + A I + DG + + I ++G +++
Sbjct: 685 GGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDG-YVFDSFIITELNGELVEF 743
Query: 325 EGEKERVIKCLEAAIRRRVSEGLS----------------------------LELCAKDR 356
+ +E + + L A++ LS +EL A D+
Sbjct: 744 DRRRE-LEQALTLALQSEKLSALSITPNRQLQHFTVQTDVRFLHENKKEHTEMELVALDK 802
Query: 357 VGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALR 409
GLL++V++I E L++ A ++TVGE+A + F + + G +D + E LR
Sbjct: 803 AGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQREILR 855
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKITDGKT 94
T V + ++P + +VV + I A I++ G+ D F + + G+ + +
Sbjct: 687 TEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRR 746
Query: 95 IDYIEKAL--GPKGHITAGAKTWPSKQVGVHSV-----------GDHTAIELIGRDRPGL 141
+ +E+AL + + P++Q+ +V +HT +EL+ D+ GL
Sbjct: 747 RE-LEQALTLALQSEKLSALSITPNRQLQHFTVQTDVRFLHENKKEHTEMELVALDKAGL 805
Query: 142 LSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200
L+++S + + L N+ A++ T + A ++ + +A+ Q R E L+N+L
Sbjct: 806 LAQVSQIFSELNLNLLNAKITTVGEK-AEDFFILTNQFGQALDSQQR-----EILRNVL 858
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++DN + + TVV+ ++PG+L + + L+D L I A+I G +D F+V
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893
Query: 83 DQQGKKITDGK 93
+G K+TD +
Sbjct: 894 TTEGGKVTDTR 904
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 34/202 (16%)
Query: 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAI-SSDGPHASQEYYIRHMDGCILDTEGEK- 328
V + +DR L D+ ++ + V A + +S A +Y++ + G E +
Sbjct: 738 VVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRA 797
Query: 329 -ERVIKCLEAAIR--------RRVSE----------------------GLSLELCAKDRV 357
R+ LEAA + RR SE +E +DR
Sbjct: 798 LRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRP 857
Query: 358 GLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV-DMKTIEALRKEIGHTM 416
GLL + + L ++ LS+ A + GE+AV+ FYV+ G V D + + AL+ ++ +
Sbjct: 858 GLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKVTDTRKLNALKADLLAAL 917
Query: 417 LFNVKKVPASRSAYKEPEASIA 438
N PA+R + AS+A
Sbjct: 918 EQNEASAPAARPGLRRARASVA 939
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 33/204 (16%)
Query: 1 MANAYWPYF--DPEYESLSLRINPPRASVDNSSCPECTV--------VKVDSVNKPGILL 50
M NAY+ F D + L RA++ + E V V + + ++ G+
Sbjct: 694 MENAYFSAFSQDDLFHHAEL---ARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFA 750
Query: 51 EVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQG-----------KKITD------- 91
++ +S L + A + +S G +DVF+V D G +++ D
Sbjct: 751 DLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRLADALEAAGK 810
Query: 92 GKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLAN 151
G + +E G + A PS + + D T +E GRDRPGLL ++ LA+
Sbjct: 811 GDAL-AVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLAD 869
Query: 152 LRFNVAAAEVWTHNRRIACVLYVN 175
++ +A + + R YV
Sbjct: 870 SALSIQSAHIDGYGERAVDAFYVQ 893
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++DN + + TVV+ ++PG+L + + L+D L I A+I G +D F+V
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893
Query: 83 DQQGKKITDGK 93
+G K+TD +
Sbjct: 894 TTEGGKVTDTR 904
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 34/202 (16%)
Query: 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAI-SSDGPHASQEYYIRHMDGCILDTEGEK- 328
V + +DR L D+ ++ + V A + +S A +Y++ + G E +
Sbjct: 738 VVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRA 797
Query: 329 -ERVIKCLEAAIR--------RRVSE----------------------GLSLELCAKDRV 357
R+ LEAA + RR SE +E +DR
Sbjct: 798 LRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRP 857
Query: 358 GLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV-DMKTIEALRKEIGHTM 416
GLL + + L ++ LS+ A + GE+AV+ FYV+ G V D + + AL+ ++ +
Sbjct: 858 GLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKVTDTRKLNALKADLLAAL 917
Query: 417 LFNVKKVPASRSAYKEPEASIA 438
N PA+R + AS+A
Sbjct: 918 EQNEASAPAARPGLRRARASVA 939
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 33/204 (16%)
Query: 1 MANAYWPYF--DPEYESLSLRINPPRASVDNSSCPECTV--------VKVDSVNKPGILL 50
M NAY+ F D + L RA++ + E V V + + ++ G+
Sbjct: 694 MENAYFSAFSQDDLFHHAEL---ARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFA 750
Query: 51 EVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQG-----------KKITD------- 91
++ +S L + A + +S G +DVF+V D G +++ D
Sbjct: 751 DLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRLADALEAAGK 810
Query: 92 GKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLAN 151
G + +E G + A PS + + D T +E GRDRPGLL ++ LA+
Sbjct: 811 GDAL-AVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLAD 869
Query: 152 LRFNVAAAEVWTHNRRIACVLYVN 175
++ +A + + R YV
Sbjct: 870 SALSIQSAHIDGYGERAVDAFYVQ 893
>sp|Q4KHH8|GLND_PSEF5 [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=glnD PE=3 SV=1
Length = 900
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LEL A DR GLL+ + +I E LS+ A ++T+GE+ +VF++ DA P+
Sbjct: 817 LELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDAHNQPL 868
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 43/80 (53%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P ++ N + TV+++ + ++PG+L + ++ + DL + A I++ G DVF +
Sbjct: 802 PEVTIHNDAQRPVTVLELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 83 DQQGKKITDGKTIDYIEKAL 102
D + ++D + ++ A+
Sbjct: 862 DAHNQPLSDPQLCSRLQDAI 881
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQGKKI-TDGKTIDYIEKAL-----GPK 105
V + L+L I A I + F +D + V+D G+ I + + ++ I K L P
Sbjct: 722 VAAMDQLNLNIHDARIITSSSQFTLDTYIVLDNDGESIGNNPQRVEQIRKGLTDALRNPD 781
Query: 106 GHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + +V +H+ T +EL DRPGLL+ I + +
Sbjct: 782 DYPTIIQRRVPRQLKHFAFAPEVTIHNDAQRPVTVLELSAPDRPGLLARIGKIFLEFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+ A++ T R+ V ++ D
Sbjct: 842 LQNAKIATLGERVEDVFFITD 862
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LE+ A DR GLL+ + RI E LS+ A ++T+GE+ +VF++ DA P+
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPL 868
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 46/81 (56%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP+ ++ N + T++++ + ++PG+L + ++ + DL + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D + ++D + +++A+
Sbjct: 861 TDADNQPLSDPQLCSRLQEAI 881
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQGKKITDG----KTI-DYIEKAL-GPK 105
V +S L+L I A I + F +D + V+D G I D K I D + +AL P+
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 106 GHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + QV + + T +E+ DRPGLL+ I + +
Sbjct: 782 DYPTIIQRRVPRQLKHFNFPPQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+ A++ T R+ V ++ D
Sbjct: 842 LQNAKIATLGERVEDVFFITD 862
>sp|Q4QJM6|GLND_HAEI8 [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
86-028NP) GN=glnD PE=3 SV=1
Length = 863
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 32/173 (18%)
Query: 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAI--SSDGPHASQEYYIRHMDGCILDT 324
G + V + C+D+ L +V T+ ++ + A I + DG + + I ++G +++
Sbjct: 685 GGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDG-YVFDSFIITELNGELVEF 743
Query: 325 EGEKERVIKCLEAAIRRRVSEGLS----------------------------LELCAKDR 356
+ +E + + L A++ LS +EL A D+
Sbjct: 744 DRRRE-LEQALTLALQSEKLPALSIVPNRQLQHFTVQTDVRFLQENKKEHTQMELVALDK 802
Query: 357 VGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALR 409
GLL++V++I E L++ A ++TVGE+A + F + + G +D + E LR
Sbjct: 803 AGLLAQVSQIFTELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQREILR 855
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 21/179 (11%)
Query: 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKITDGKT 94
T V + ++P + +VV + I A I++ G+ D F + + G+ + +
Sbjct: 687 TEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRR 746
Query: 95 IDYIEKAL--GPKGHITAGAKTWPSKQVGVHSV-----------GDHTAIELIGRDRPGL 141
+ +E+AL + P++Q+ +V +HT +EL+ D+ GL
Sbjct: 747 RE-LEQALTLALQSEKLPALSIVPNRQLQHFTVQTDVRFLQENKKEHTQMELVALDKAGL 805
Query: 142 LSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200
L+++S + L N+ A++ T + A ++ + +A+ Q R E L+N+L
Sbjct: 806 LAQVSQIFTELNLNLLNAKITTVGEK-AEDFFILTNQFGQALDSQQR-----EILRNVL 858
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LE+ A DR GLL+ + RI E LS+ A ++T+GE+ +VF++ DA P+
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPL 868
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 50/93 (53%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP+ ++ N + T++++ + ++PG+L + ++ + DL + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 IDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D + ++D + +++A+ + G+ T
Sbjct: 861 TDADNQPLSDPQLCSRLQEAIVQQLQAGQGSDT 893
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQGKKITDG----KTI-DYIEKAL-GPK 105
V +S L+L I A I + F +D + V+D G I D K I D + +AL P+
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 106 GHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + QV + + T +E+ DRPGLL+ + + +
Sbjct: 782 DYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTS 215
+ A++ T R+ V ++ D + + D S ++E + L+ D+ + R +
Sbjct: 842 LQNAKIATLGERVEDVFFIT-DADNQPLSDPQLCSRLQEAIVQQLQAGQGSDTSQT-RVT 899
Query: 216 F 216
F
Sbjct: 900 F 900
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LE+ A DR GLL+ + RI E LS+ A ++T+GE+ +VF++ DA P+
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPL 868
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 50/93 (53%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP+ ++ N + T++++ + ++PG+L + ++ + DL + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 IDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
D + ++D + +++A+ + G+ T
Sbjct: 861 TDADNQPLSDPQLCSRLQEAIVQQLQAGQGSDT 893
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQGKKITDG----KTI-DYIEKAL-GPK 105
V +S L+L I A I + F +D + V+D G I D K I D + +AL P+
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 106 GHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + QV + + T +E+ DRPGLL+ + + +
Sbjct: 782 DYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTS 215
+ A++ T R+ V ++ D + + D S ++E + L+ D+ + R +
Sbjct: 842 LQNAKIATLGERVEDVFFIT-DADNQPLSDPQLCSRLQEAIVQQLQAGQGSDTSQT-RVT 899
Query: 216 F 216
F
Sbjct: 900 F 900
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LE+ A DR GLL+ + RI E LS+ A ++T+GE+ +VF++ DA P+
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPL 868
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 53/97 (54%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP+ ++ N + T++++ + ++PG+L + ++ + DL + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 IDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSK 118
D + ++D + +++A+ + G+ T P++
Sbjct: 861 TDADNQPLSDPQLCSRLQEAIVQQLQAGQGSDTSPTR 897
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQGKKITDG----KTI-DYIEKAL-GPK 105
V +S L+L I A I + F +D + V+D G I D K I D + +AL P+
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 106 GHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + QV + + T +E+ DRPGLL+ + + +
Sbjct: 782 DYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTS 215
+ A++ T R+ V ++ D + + D S ++E + L+ D+ R +
Sbjct: 842 LQNAKIATLGERVEDVFFIT-DADNQPLSDPQLCSRLQEAIVQQLQAGQGSDTSPT-RVT 899
Query: 216 F 216
F
Sbjct: 900 F 900
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LE+ A DR GLL+ + RI E +S+ A ++T+GE+ +VF++ DA P+
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITDADNQPL 868
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 52/97 (53%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP+ ++ N + T++++ + ++PG+L + ++ + D+ + A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFI 860
Query: 82 IDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSK 118
D + ++D + +++A+ + ++ PS+
Sbjct: 861 TDADNQPLSDPQLCSRLQEAIIQQLQAGQASEASPSR 897
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 25/145 (17%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQG----------KKITDGKTIDYIEKA 101
V ++ L+L I A I + F +D + V+D G K+I DG T E
Sbjct: 722 VAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLT----EAL 777
Query: 102 LGPKGHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLAN 151
P+ + + P + QV + + T +E+ DRPGLL+ I +
Sbjct: 778 RTPEDYPAIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLE 837
Query: 152 LRFNVAAAEVWTHNRRIACVLYVND 176
++ A++ T R+ V ++ D
Sbjct: 838 FDISLQNAKIATLGERVEDVFFITD 862
>sp|A7N1X9|GLND_VIBHB [Protein-PII] uridylyltransferase OS=Vibrio harveyi (strain ATCC
BAA-1116 / BB120) GN=glnD PE=3 SV=1
Length = 874
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHV 81
P + + T V V S ++P + VV L + + A I +S G+ +D F V
Sbjct: 679 PLVLISKKATRGGTEVFVYSPDQPALFATVVAELDRRNFNVHDAQIMTSKDGYVLDTFMV 738
Query: 82 IDQQGKKITDGK---TIDYIEKALGPKGHITAGAKTWPSK--QVGVHSVGD--------H 128
+DQ GK I +G+ +I L + P+K V + D
Sbjct: 739 LDQHGKAIEEGRHSAVTKHITHVLEDGRPTKIKTRRTPNKLQHFNVKTKVDFLPTKSKKR 798
Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQ 186
T +E + D PGLL+++ A+L N+ AA++ T R + + + R +Q
Sbjct: 799 TLMEFVALDTPGLLAKVGRTFADLGINLHAAKITTIGERAEDLFILTSEAGGRLSEEQ 856
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
+E A D GLL++V R + G+++ A ++T+GE+A ++F + +G + + L
Sbjct: 801 MEFVALDTPGLLAKVGRTFADLGINLHAAKITTIGERAEDLFILTSEAGGRLSEEQQTEL 860
Query: 409 RKEI 412
R+++
Sbjct: 861 REKL 864
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 38/179 (21%)
Query: 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAI--SSDGPHASQEYYIRHMDGCILDT 324
G + V + C+DR L +V + + + + A I S DG +A + + +DG +L
Sbjct: 697 GGTEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDG-YAFDSFIVTELDGSLL-- 753
Query: 325 EGEKERVIKCLEAAIRRRVSEGLS-------------------------------LELCA 353
+ ++ RV++ +A I S L+ +EL
Sbjct: 754 KFDRRRVLE--KAIINSLNSNELTKLQGSENHKLQHFNVKTEVRFLNTEKTTHTEMELFT 811
Query: 354 KDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEI 412
D+ GLL++V+ + E LS+ A ++T+GE+A + F + +A G + + ++L +++
Sbjct: 812 LDKAGLLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTNAKGEALSERERQSLSEKL 870
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 27 VDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQ 85
+ N T V + ++P + L+VV + + L I A I+S G+ D F V +
Sbjct: 690 ISNRFSAGGTEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYAFDSFIVTELD 749
Query: 86 G------------KKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIEL 133
G K I + + + K G + H + HT +EL
Sbjct: 750 GSLLKFDRRRVLEKAIINSLNSNELTKLQGSENHKLQHFNVKTEVRFLNTEKTTHTEMEL 809
Query: 134 IGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLME 193
D+ GLL+++S V + L ++ A++ T + A ++ + A+ ++ R SL E
Sbjct: 810 FTLDKAGLLADVSLVFSELNLSIQNAKITTIGEK-AQDFFILTNAKGEALSERERQSLSE 868
Query: 194 E 194
+
Sbjct: 869 K 869
>sp|Q3KHB4|GLND_PSEPF [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf0-1) GN=glnD PE=3 SV=1
Length = 900
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LEL A DR GLL+ V I E LS+ A ++T+GE+ +VF++ DA P+
Sbjct: 817 LELTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFITDAHNQPL 868
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 53 VQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKITDG----KTI-DYIEKAL-GPK 105
V + L+L I A I+S + +D + V+D G I D K I D + +AL P
Sbjct: 722 VAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTDGDSIGDNPVRVKQIRDGLTEALRNPA 781
Query: 106 GHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + QV +H+ T +EL DRPGLL+ + + +
Sbjct: 782 DYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELTAPDRPGLLARVGGIFLEFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+ A++ T R+ V ++ D
Sbjct: 842 LQNAKIATLGERVEDVFFITD 862
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P+ ++ N + TV+++ + ++PG+L V + + DL + A I++ G DVF +
Sbjct: 802 PQVTIHNDAQRPVTVLELTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 83 DQQGKKITD 91
D + ++D
Sbjct: 862 DAHNQPLSD 870
>sp|Q60BB2|GLND_METCA [Protein-PII] uridylyltransferase OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=glnD PE=3
SV=1
Length = 877
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVD 401
LEL A DR GLLS+V + G+ + A +STVG +A ++F++ D P+D
Sbjct: 806 LELIATDRPGLLSKVGQAFMRTGIRLHNAKISTVGSRAEDIFFITDREDRPLD 858
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 44 NKPGILLEVVQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKITDG-----KTIDY 97
N+ + + VL L L + A I+S G+ + F+V+++ G +G + D
Sbjct: 703 NRDFLFAQTTAVLDQLGLTVLDAKIIASRQGFALLSFNVLERSGTA-PEGLFRLVQICDR 761
Query: 98 IEKALGPKGHITAGAKTWPSKQVGVHSV-----------GDHTAIELIGRDRPGLLSEIS 146
+++AL G ++Q+ +V + +ELI DRPGLLS++
Sbjct: 762 LKEALSGGGAPPPAVSRLATRQIRHFTVPTKVFFHDDPQNRFSILELIATDRPGLLSKVG 821
Query: 147 AVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSL 191
+ A++ T R + ++ D G+ R +L
Sbjct: 822 QAFMRTGIRLHNAKISTVGSRAEDIFFITDREDRPLDGEADRAAL 866
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVD-----MK 403
LE+ A DR GLL+ V ++ + LSV A ++T+GE+ +VF+V DA P+ ++
Sbjct: 817 LEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTDADNQPLSDPQLCLR 876
Query: 404 TIEALRKEI 412
+A+ KE+
Sbjct: 877 LQQAIIKEL 885
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 22 PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
PP+ ++ N + T++++ + ++PG+L V Q+ D DL + A I++ G DVF V
Sbjct: 801 PPQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFV 860
Query: 82 IDQQGKKITDGKTIDYIEKAL 102
D + ++D + +++A+
Sbjct: 861 TDADNQPLSDPQLCLRLQQAI 881
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 53 VQVLSDLDLIITKAYISSDGGWF-MDVFHVIDQQGKKI-TDGKTIDYIEKAL-----GPK 105
V + L+L I A I + F +D + V++ G I + + I+ I L P
Sbjct: 722 VAAMDQLNLNIHDARILTSSSQFTLDTYIVLEADGSPIGNNPERIEEIRSGLIAALRNPD 781
Query: 106 GHITAGAKTWPSK--------QVGVH--SVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
++T + P + QV +H + T +E+I DRPGLL+ + + + +
Sbjct: 782 DYLTIIQRRVPRQLKHFAFPPQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDS 208
V A++ T R+ V +V D Q L L + +K + + + + S
Sbjct: 842 VQNAKIATLGERVEDVFFVTDADNQPLSDPQLCLRLQQAIIKELQQENEQQPS 894
>sp|C3K5E4|GLND_PSEFS [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=glnD PE=3 SV=1
Length = 900
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LEL A DR GLL+ + I E LS+ A ++T+GE+ +VF++ DA P+
Sbjct: 817 LELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPL 868
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P+ ++ N + TV+++ + ++PG+L + + + DL + A I++ G DVF +
Sbjct: 802 PQVTISNDAQRPVTVLELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 83 DQQGKKITDGKTIDYIEKALGPKGHIT 109
D + ++D + ++ A+ + +T
Sbjct: 862 DADNQPLSDPELCRRLQDAIVQQLSVT 888
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 53 VQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKITDG-----KTIDYIEKAL-GPK 105
V + L+L I A I+S + +D + V+D +G+ I D K + + +AL P
Sbjct: 722 VAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTEGESIGDNPVRVKKIREGLTEALRNPD 781
Query: 106 GHITAGAKTWPSK--------QVGVHSVGDH--TAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + QV + + T +EL DRPGLL+ I + +
Sbjct: 782 DYPTIIQRRVPRQLKHFAFAPQVTISNDAQRPVTVLELSAPDRPGLLARIGGIFLEFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+ A++ T R+ V ++ D
Sbjct: 842 LQNAKIATLGERVEDVFFITD 862
>sp|Q9XC07|GLND_VIBF1 [Protein-PII] uridylyltransferase OS=Vibrio fischeri (strain ATCC
700601 / ES114) GN=glnD PE=3 SV=2
Length = 873
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 15/180 (8%)
Query: 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKT 94
T + V S ++P + V L + I A + SS G+ +D F V+DQ I + +
Sbjct: 692 TEIFVYSKDQPHLFATVAAELDRRSITIYDAQVMSSKDGYALDTFMVLDQNDDPIDEERQ 751
Query: 95 IDYIEKALGPK--GHITAGAKTWPSKQVGVHSV-----------GDHTAIELIGRDRPGL 141
I++ K T P +Q+ +V G T +E + D PGL
Sbjct: 752 QRLIDQLYDVKLNDQATHIKTRRPPRQLQHFNVKTRMEFLPTKTGKRTLMEFVALDTPGL 811
Query: 142 LSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201
L+ + A A L N+ AA++ T R + + D R + D+ + L +KN+ R
Sbjct: 812 LATVGATFAQLGINLHAAKITTIGERAEDLFILTSDVGGR-LDDEKQAELELALVKNVAR 870
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVD 401
+E A D GLL+ V + G+++ A ++T+GE+A ++F + G +D
Sbjct: 801 MEFVALDTPGLLATVGATFAQLGINLHAAKITTIGERAEDLFILTSDVGGRLD 853
>sp|P36223|GLND_AZOVI [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii GN=glnD
PE=3 SV=1
Length = 899
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
LE+ A DR GLL+ + +I + LS+ A ++T+GE+ +VF+V DA P+
Sbjct: 817 LEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHNQPL 868
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 45/83 (54%)
Query: 23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
P+ ++ N + T++++ + ++PG+L + ++ D DL + A I++ G DVF V
Sbjct: 802 PQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVT 861
Query: 83 DQQGKKITDGKTIDYIEKALGPK 105
D + ++D + ++ A+ +
Sbjct: 862 DAHNQPLSDPELCARLQLAIAEQ 884
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 53 VQVLSDLDLIITKA-YISSDGGWFMDVFHVIDQQGKKITDGKT-IDYIEKAL-----GPK 105
V + L+L I A I+S + +D + V+D G I + I I + L P
Sbjct: 722 VAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGGSIGNNPARIQEIRQGLVEALRNPA 781
Query: 106 GHITAGAKTWPSK--------QVGVH--SVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
+ T + P + QV + ++ T +E+I DRPGLL+ I + + +
Sbjct: 782 DYPTIIQRRVPRQLKHFAFAPQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLS 841
Query: 156 VAAAEVWTHNRRIACVLYVND 176
+ A++ T R+ V +V D
Sbjct: 842 LQNAKIATLGERVEDVFFVTD 862
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,809,152
Number of Sequences: 539616
Number of extensions: 6911810
Number of successful extensions: 17503
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 16818
Number of HSP's gapped (non-prelim): 681
length of query: 456
length of database: 191,569,459
effective HSP length: 121
effective length of query: 335
effective length of database: 126,275,923
effective search space: 42302434205
effective search space used: 42302434205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)