Query 012814
Match_columns 456
No_of_seqs 326 out of 2096
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:35:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 4.6E-30 1E-34 286.2 24.4 198 1-201 638-854 (854)
2 PRK05007 PII uridylyl-transfer 100.0 1.3E-29 2.7E-34 283.5 24.7 199 1-202 661-880 (884)
3 PRK00275 glnD PII uridylyl-tra 100.0 5.5E-29 1.2E-33 278.5 25.1 202 1-203 660-888 (895)
4 PRK04374 PII uridylyl-transfer 100.0 1.3E-27 2.8E-32 265.9 25.3 199 1-201 649-867 (869)
5 TIGR01693 UTase_glnD [Protein- 100.0 1.3E-27 2.8E-32 267.9 24.4 198 1-200 627-849 (850)
6 PRK03059 PII uridylyl-transfer 100.0 1.4E-27 3.1E-32 266.0 23.7 196 1-201 637-855 (856)
7 PRK05092 PII uridylyl-transfer 100.0 4.5E-27 9.8E-32 265.2 25.1 203 1-204 690-918 (931)
8 COG2844 GlnD UTP:GlnB (protein 99.9 1.3E-26 2.9E-31 245.6 20.3 199 1-202 644-863 (867)
9 PRK01759 glnD PII uridylyl-tra 99.9 3.5E-26 7.6E-31 255.1 23.7 164 252-416 661-853 (854)
10 PRK05007 PII uridylyl-transfer 99.9 3.8E-26 8.2E-31 255.7 24.0 163 254-417 687-879 (884)
11 PRK03381 PII uridylyl-transfer 99.9 5.6E-24 1.2E-28 235.3 22.4 173 21-197 586-773 (774)
12 TIGR01693 UTase_glnD [Protein- 99.9 1.7E-23 3.7E-28 234.8 23.7 164 254-417 654-850 (850)
13 COG2844 GlnD UTP:GlnB (protein 99.9 4.9E-23 1.1E-27 218.7 20.4 164 253-417 669-862 (867)
14 PRK00275 glnD PII uridylyl-tra 99.9 1.8E-22 4E-27 226.1 26.0 183 126-340 702-886 (895)
15 PRK04374 PII uridylyl-transfer 99.9 2.2E-22 4.9E-27 224.1 24.0 161 254-417 675-867 (869)
16 PRK05092 PII uridylyl-transfer 99.9 1.5E-21 3.2E-26 220.6 25.8 189 122-340 726-915 (931)
17 PRK03381 PII uridylyl-transfer 99.9 2.6E-21 5.7E-26 214.1 24.0 178 123-335 595-772 (774)
18 PRK03059 PII uridylyl-transfer 99.9 4.3E-21 9.3E-26 214.3 24.9 181 123-339 673-854 (856)
19 cd04897 ACT_ACR_3 ACT domain-c 99.8 9.9E-19 2.1E-23 136.6 10.6 71 346-416 1-72 (75)
20 cd04895 ACT_ACR_1 ACT domain-c 99.8 9.1E-19 2E-23 135.9 10.0 69 346-414 1-70 (72)
21 cd04896 ACT_ACR-like_3 ACT dom 99.7 9.7E-18 2.1E-22 131.0 10.1 70 347-417 1-73 (75)
22 cd04897 ACT_ACR_3 ACT domain-c 99.7 1.5E-17 3.3E-22 130.0 11.1 74 128-202 1-74 (75)
23 cd04895 ACT_ACR_1 ACT domain-c 99.7 8.1E-17 1.8E-21 124.9 10.4 69 128-197 1-69 (72)
24 PRK11589 gcvR glycine cleavage 99.7 3.4E-16 7.3E-21 144.7 14.0 143 265-415 5-165 (190)
25 cd04896 ACT_ACR-like_3 ACT dom 99.7 5E-16 1.1E-20 121.4 10.7 71 129-201 1-73 (75)
26 PRK11589 gcvR glycine cleavage 99.6 5.2E-15 1.1E-19 136.8 12.8 157 32-201 5-167 (190)
27 cd04925 ACT_ACR_2 ACT domain-c 99.6 8.3E-15 1.8E-19 115.3 10.6 73 129-202 1-74 (74)
28 cd04900 ACT_UUR-like_1 ACT dom 99.5 9.9E-14 2.1E-18 108.8 10.4 71 129-200 2-73 (73)
29 cd04900 ACT_UUR-like_1 ACT dom 99.5 9.2E-14 2E-18 109.0 9.8 69 36-104 2-71 (73)
30 cd04925 ACT_ACR_2 ACT domain-c 99.5 1.7E-13 3.6E-18 107.9 10.5 70 347-416 1-72 (74)
31 cd04927 ACT_ACR-like_2 Second 99.5 2E-13 4.4E-18 107.9 10.9 71 130-202 2-73 (76)
32 COG2716 GcvR Glycine cleavage 99.5 1.1E-13 2.3E-18 122.7 9.7 141 266-414 3-161 (176)
33 cd04927 ACT_ACR-like_2 Second 99.5 2.6E-13 5.6E-18 107.3 11.0 69 348-416 2-71 (76)
34 cd04928 ACT_TyrKc Uncharacteri 99.4 1.1E-12 2.5E-17 100.5 9.6 52 36-87 2-54 (68)
35 COG2716 GcvR Glycine cleavage 99.4 1.3E-12 2.8E-17 115.8 10.2 159 32-204 2-166 (176)
36 PRK00227 glnD PII uridylyl-tra 99.3 2.1E-11 4.5E-16 132.7 15.3 145 36-202 547-692 (693)
37 cd04926 ACT_ACR_4 C-terminal 99.3 3.8E-11 8.3E-16 93.9 10.3 69 36-105 2-70 (72)
38 cd04926 ACT_ACR_4 C-terminal 99.3 5.3E-11 1.2E-15 93.1 10.1 70 346-415 1-70 (72)
39 cd04928 ACT_TyrKc Uncharacteri 99.2 7E-11 1.5E-15 90.6 9.2 52 269-320 2-54 (68)
40 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 2E-10 4.3E-15 88.8 10.6 69 347-415 1-69 (70)
41 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 1.9E-10 4.2E-15 88.9 10.3 70 129-200 1-70 (70)
42 PRK00227 glnD PII uridylyl-tra 99.2 1.7E-10 3.7E-15 125.7 13.0 137 269-417 547-691 (693)
43 cd04873 ACT_UUR-ACR-like ACT d 98.9 2.4E-08 5.3E-13 76.7 10.3 70 129-200 1-70 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 98.9 3E-08 6.4E-13 76.2 10.6 68 348-415 2-69 (70)
45 PF13740 ACT_6: ACT domain; PD 98.8 3.3E-08 7.1E-13 78.1 9.7 65 128-200 2-66 (76)
46 cd04894 ACT_ACR-like_1 ACT dom 98.8 2.4E-08 5.2E-13 73.5 6.5 67 36-105 1-67 (69)
47 PF13740 ACT_6: ACT domain; PD 98.6 3E-07 6.5E-12 72.6 10.2 64 268-338 2-65 (76)
48 COG4747 ACT domain-containing 98.6 8.6E-07 1.9E-11 73.9 11.5 114 36-176 4-118 (142)
49 cd04870 ACT_PSP_1 CT domains f 98.5 2.3E-07 5E-12 73.0 6.8 65 130-201 1-65 (75)
50 cd04893 ACT_GcvR_1 ACT domains 98.5 6.8E-07 1.5E-11 70.7 8.6 63 128-198 1-63 (77)
51 cd04893 ACT_GcvR_1 ACT domains 98.4 1.5E-06 3.3E-11 68.7 8.5 48 36-83 2-49 (77)
52 PF01842 ACT: ACT domain; Int 98.4 3.7E-06 8E-11 63.6 9.5 61 129-198 1-63 (66)
53 COG4747 ACT domain-containing 98.4 1.7E-05 3.7E-10 66.3 13.7 126 270-417 5-131 (142)
54 cd04870 ACT_PSP_1 CT domains f 98.3 1.9E-06 4E-11 67.8 7.4 62 270-337 1-62 (75)
55 PF01842 ACT: ACT domain; Int 98.3 7.3E-06 1.6E-10 61.9 9.5 39 347-385 1-39 (66)
56 cd04872 ACT_1ZPV ACT domain pr 98.2 4E-06 8.6E-11 68.0 7.0 66 129-200 2-67 (88)
57 PRK07431 aspartate kinase; Pro 98.1 0.0017 3.7E-08 70.9 27.5 262 42-378 278-554 (587)
58 PRK00194 hypothetical protein; 98.1 8.7E-06 1.9E-10 66.2 7.2 65 128-198 3-67 (90)
59 cd04894 ACT_ACR-like_1 ACT dom 98.1 1.3E-05 2.8E-10 59.3 6.4 68 129-200 1-68 (69)
60 cd04875 ACT_F4HF-DF N-terminal 98.1 1.9E-05 4.2E-10 61.7 7.9 65 130-200 1-67 (74)
61 cd04869 ACT_GcvR_2 ACT domains 98.0 2.1E-05 4.5E-10 62.4 7.8 62 130-198 1-68 (81)
62 cd04875 ACT_F4HF-DF N-terminal 98.0 1.3E-05 2.8E-10 62.6 6.3 66 348-415 1-66 (74)
63 cd04872 ACT_1ZPV ACT domain pr 98.0 1.6E-05 3.5E-10 64.4 6.7 49 36-84 2-50 (88)
64 cd04869 ACT_GcvR_2 ACT domains 97.9 5.1E-05 1.1E-09 60.1 8.4 48 37-84 1-54 (81)
65 PRK00194 hypothetical protein; 97.9 3.7E-05 8.1E-10 62.4 7.2 50 35-84 3-52 (90)
66 COG3830 ACT domain-containing 97.9 2.3E-05 4.9E-10 62.8 4.9 68 128-201 3-70 (90)
67 TIGR00655 PurU formyltetrahydr 97.8 0.0005 1.1E-08 67.8 13.9 48 37-84 2-51 (280)
68 cd04898 ACT_ACR-like_4 ACT dom 97.7 3.9E-05 8.6E-10 59.0 4.4 68 348-416 2-74 (77)
69 PRK13010 purU formyltetrahydro 97.7 0.00062 1.4E-08 67.4 13.5 104 268-375 9-122 (289)
70 PRK13010 purU formyltetrahydro 97.7 0.00053 1.2E-08 67.9 13.0 37 34-70 8-44 (289)
71 PF13291 ACT_4: ACT domain; PD 97.7 0.00028 6E-09 55.9 8.9 64 127-197 5-70 (80)
72 PRK06027 purU formyltetrahydro 97.7 0.00017 3.8E-09 71.3 9.0 69 126-200 4-74 (286)
73 TIGR00655 PurU formyltetrahydr 97.7 0.001 2.2E-08 65.6 14.1 101 270-375 2-113 (280)
74 COG3830 ACT domain-containing 97.6 6.2E-05 1.4E-09 60.3 4.2 48 268-315 3-50 (90)
75 PRK06027 purU formyltetrahydro 97.6 0.0019 4E-08 64.1 14.5 102 267-373 5-116 (286)
76 PRK13011 formyltetrahydrofolat 97.5 0.0022 4.9E-08 63.5 14.4 106 268-379 7-122 (286)
77 PF13291 ACT_4: ACT domain; PD 97.4 0.0015 3.2E-08 51.7 9.9 64 35-104 6-71 (80)
78 cd04887 ACT_MalLac-Enz ACT_Mal 97.4 0.0012 2.6E-08 51.1 9.2 60 131-197 2-62 (74)
79 PRK13011 formyltetrahydrofolat 97.4 0.0022 4.8E-08 63.5 12.3 52 35-86 7-60 (286)
80 COG0788 PurU Formyltetrahydrof 97.4 0.00061 1.3E-08 65.3 7.8 49 34-82 6-56 (287)
81 CHL00100 ilvH acetohydroxyacid 97.2 0.0023 5E-08 58.5 9.0 66 347-416 3-68 (174)
82 cd04886 ACT_ThrD-II-like C-ter 97.1 0.0039 8.5E-08 47.3 9.0 60 131-197 1-65 (73)
83 cd04887 ACT_MalLac-Enz ACT_Mal 97.1 0.0046 9.9E-08 47.8 9.3 61 38-104 2-63 (74)
84 COG0788 PurU Formyltetrahydrof 97.1 0.0013 2.8E-08 63.1 6.9 67 126-198 5-73 (287)
85 cd04877 ACT_TyrR N-terminal AC 97.1 0.0032 6.9E-08 49.1 8.0 58 130-197 2-59 (74)
86 cd04877 ACT_TyrR N-terminal AC 97.0 0.0027 5.8E-08 49.5 7.2 35 348-382 2-36 (74)
87 cd04908 ACT_Bt0572_1 N-termina 97.0 0.0058 1.3E-07 46.4 8.8 44 348-393 3-46 (66)
88 cd04908 ACT_Bt0572_1 N-termina 97.0 0.0041 9E-08 47.2 7.9 46 129-176 2-47 (66)
89 cd04905 ACT_CM-PDT C-terminal 97.0 0.0062 1.3E-07 48.2 9.1 66 347-414 2-68 (80)
90 PRK06737 acetolactate synthase 97.0 0.0062 1.4E-07 47.9 8.8 63 129-198 3-66 (76)
91 CHL00100 ilvH acetohydroxyacid 97.0 0.0046 1E-07 56.5 9.2 65 129-201 3-69 (174)
92 PRK06737 acetolactate synthase 97.0 0.0046 1E-07 48.6 7.9 65 347-415 3-67 (76)
93 PRK13562 acetolactate synthase 97.0 0.0036 7.8E-08 49.9 7.3 67 347-416 3-69 (84)
94 cd04909 ACT_PDH-BS C-terminal 97.0 0.0059 1.3E-07 46.6 8.5 48 129-176 2-51 (69)
95 cd04909 ACT_PDH-BS C-terminal 97.0 0.0057 1.2E-07 46.7 8.3 63 347-416 2-66 (69)
96 cd04889 ACT_PDH-BS-like C-term 96.9 0.0026 5.6E-08 46.6 6.0 46 131-176 1-47 (56)
97 cd04888 ACT_PheB-BS C-terminal 96.9 0.0081 1.7E-07 46.6 8.9 61 130-197 2-64 (76)
98 PRK07431 aspartate kinase; Pro 96.9 0.53 1.2E-05 51.5 25.8 221 33-339 346-580 (587)
99 cd04878 ACT_AHAS N-terminal AC 96.9 0.0093 2E-07 45.1 8.8 62 348-414 2-64 (72)
100 cd04886 ACT_ThrD-II-like C-ter 96.8 0.0073 1.6E-07 45.8 7.8 65 349-416 1-68 (73)
101 cd04889 ACT_PDH-BS-like C-term 96.8 0.0042 9.1E-08 45.4 6.1 45 349-393 1-46 (56)
102 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.7 0.011 2.5E-07 45.5 8.7 63 348-414 2-65 (79)
103 PRK08178 acetolactate synthase 96.7 0.01 2.2E-07 48.6 8.4 65 126-198 6-71 (96)
104 PRK13562 acetolactate synthase 96.7 0.011 2.3E-07 47.3 8.2 63 129-198 3-67 (84)
105 PRK08178 acetolactate synthase 96.7 0.0085 1.8E-07 49.1 7.8 66 346-416 8-73 (96)
106 TIGR00119 acolac_sm acetolacta 96.7 0.0097 2.1E-07 53.6 9.0 66 347-416 2-67 (157)
107 cd04878 ACT_AHAS N-terminal AC 96.7 0.016 3.4E-07 43.8 8.9 60 130-197 2-63 (72)
108 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.6 0.015 3.3E-07 44.8 8.6 35 130-164 2-36 (79)
109 cd04882 ACT_Bt0572_2 C-termina 96.6 0.01 2.2E-07 44.4 7.3 36 348-383 1-36 (65)
110 cd04879 ACT_3PGDH-like ACT_3PG 96.6 0.016 3.4E-07 43.5 8.2 44 349-392 2-47 (71)
111 PRK11152 ilvM acetolactate syn 96.5 0.018 3.9E-07 45.3 8.0 62 347-415 4-67 (76)
112 cd04888 ACT_PheB-BS C-terminal 96.5 0.026 5.6E-07 43.7 8.9 63 348-414 2-65 (76)
113 TIGR00119 acolac_sm acetolacta 96.4 0.022 4.8E-07 51.3 9.4 64 129-200 2-67 (157)
114 cd04874 ACT_Af1403 N-terminal 96.4 0.024 5.3E-07 42.8 8.4 46 130-175 2-48 (72)
115 PRK11895 ilvH acetolactate syn 96.4 0.02 4.4E-07 51.7 9.0 66 347-416 3-68 (161)
116 cd04879 ACT_3PGDH-like ACT_3PG 96.4 0.011 2.4E-07 44.4 6.2 44 131-174 2-47 (71)
117 PRK11895 ilvH acetolactate syn 96.3 0.031 6.7E-07 50.5 9.7 64 129-200 3-68 (161)
118 cd04903 ACT_LSD C-terminal ACT 96.3 0.029 6.2E-07 42.3 8.0 33 349-381 2-34 (71)
119 PRK11152 ilvM acetolactate syn 96.3 0.029 6.3E-07 44.1 8.0 62 128-198 3-66 (76)
120 cd04898 ACT_ACR-like_4 ACT dom 96.2 0.0081 1.8E-07 46.4 4.4 68 271-338 3-73 (77)
121 cd04905 ACT_CM-PDT C-terminal 96.2 0.061 1.3E-06 42.4 9.7 48 129-176 2-50 (80)
122 cd04876 ACT_RelA-SpoT ACT dom 96.1 0.05 1.1E-06 39.9 8.6 46 131-176 1-47 (71)
123 cd04902 ACT_3PGDH-xct C-termin 96.1 0.029 6.2E-07 42.9 7.5 44 349-392 2-47 (73)
124 cd04882 ACT_Bt0572_2 C-termina 96.1 0.019 4E-07 42.9 6.2 36 130-165 1-36 (65)
125 PRK08577 hypothetical protein; 96.1 0.059 1.3E-06 47.3 10.1 53 124-176 52-106 (136)
126 cd04904 ACT_AAAH ACT domain of 96.1 0.039 8.5E-07 43.0 7.9 48 349-397 3-51 (74)
127 cd04874 ACT_Af1403 N-terminal 96.0 0.05 1.1E-06 41.1 8.3 36 348-383 2-37 (72)
128 cd04903 ACT_LSD C-terminal ACT 96.0 0.043 9.4E-07 41.2 7.9 45 38-82 2-48 (71)
129 cd04884 ACT_CBS C-terminal ACT 96.0 0.054 1.2E-06 41.7 8.2 34 131-164 2-35 (72)
130 cd04883 ACT_AcuB C-terminal AC 95.9 0.063 1.4E-06 41.0 8.4 36 347-382 2-37 (72)
131 cd04884 ACT_CBS C-terminal ACT 95.9 0.048 1E-06 42.0 7.7 34 349-382 2-35 (72)
132 PRK08577 hypothetical protein; 95.9 0.066 1.4E-06 47.0 9.5 65 346-414 56-122 (136)
133 cd04931 ACT_PAH ACT domain of 95.9 0.062 1.3E-06 43.7 8.5 65 347-414 15-80 (90)
134 cd04880 ACT_AAAH-PDT-like ACT 95.8 0.082 1.8E-06 41.0 8.9 63 350-414 3-66 (75)
135 cd02116 ACT ACT domains are co 95.8 0.062 1.3E-06 37.3 7.5 35 349-383 1-35 (60)
136 cd04876 ACT_RelA-SpoT ACT dom 95.8 0.075 1.6E-06 38.9 8.2 61 349-414 1-62 (71)
137 PRK04435 hypothetical protein; 95.8 0.093 2E-06 46.8 10.0 67 124-197 65-133 (147)
138 cd04871 ACT_PSP_2 ACT domains 95.8 0.007 1.5E-07 48.6 2.5 61 130-198 1-71 (84)
139 cd04901 ACT_3PGDH C-terminal A 95.7 0.014 3E-07 44.3 4.0 43 349-391 2-44 (69)
140 PRK11899 prephenate dehydratas 95.7 0.042 9E-07 54.3 8.3 55 346-401 194-249 (279)
141 cd04901 ACT_3PGDH C-terminal A 95.7 0.011 2.4E-07 44.8 3.4 45 38-82 2-46 (69)
142 cd04902 ACT_3PGDH-xct C-termin 95.6 0.03 6.5E-07 42.8 5.5 46 131-176 2-49 (73)
143 cd02116 ACT ACT domains are co 95.5 0.11 2.4E-06 36.0 8.1 35 131-165 1-35 (60)
144 PRK04435 hypothetical protein; 95.4 0.13 2.8E-06 45.8 9.7 76 24-104 58-134 (147)
145 cd04883 ACT_AcuB C-terminal AC 95.4 0.11 2.4E-06 39.7 8.0 47 129-175 2-50 (72)
146 TIGR00656 asp_kin_monofn aspar 95.3 0.5 1.1E-05 49.1 15.0 100 267-377 259-371 (401)
147 PF13710 ACT_5: ACT domain; PD 95.2 0.081 1.8E-06 40.0 6.5 54 137-198 1-56 (63)
148 cd04929 ACT_TPH ACT domain of 95.2 0.13 2.8E-06 40.2 7.9 50 349-399 3-53 (74)
149 PF13710 ACT_5: ACT domain; PD 95.1 0.069 1.5E-06 40.4 5.9 57 355-415 1-57 (63)
150 PRK07334 threonine dehydratase 95.0 0.14 3.1E-06 53.3 10.0 67 125-198 323-394 (403)
151 PRK07334 threonine dehydratase 94.8 0.46 9.9E-06 49.5 13.2 67 346-417 326-397 (403)
152 PRK06291 aspartate kinase; Pro 94.3 1.5 3.3E-05 46.5 16.0 102 266-378 319-433 (465)
153 cd04880 ACT_AAAH-PDT-like ACT 94.2 0.53 1.2E-05 36.4 9.1 46 131-176 2-48 (75)
154 TIGR00656 asp_kin_monofn aspar 94.1 1.2 2.7E-05 46.1 14.6 106 34-158 259-370 (401)
155 cd04930 ACT_TH ACT domain of t 94.1 0.26 5.6E-06 42.0 7.8 53 346-399 41-94 (115)
156 PRK06635 aspartate kinase; Rev 94.1 0.67 1.4E-05 48.2 12.6 103 267-378 261-375 (404)
157 cd04931 ACT_PAH ACT domain of 94.0 0.74 1.6E-05 37.4 9.8 71 127-202 13-84 (90)
158 PRK06635 aspartate kinase; Rev 93.9 0.8 1.7E-05 47.6 12.7 107 37-160 264-375 (404)
159 cd04885 ACT_ThrD-I Tandem C-te 93.8 0.33 7.2E-06 36.9 7.2 32 272-304 2-33 (68)
160 PRK10622 pheA bifunctional cho 93.8 0.24 5.2E-06 51.2 8.3 55 346-401 297-352 (386)
161 PRK08210 aspartate kinase I; R 93.8 1.6 3.4E-05 45.4 14.5 98 266-376 269-372 (403)
162 TIGR00719 sda_beta L-serine de 93.4 0.35 7.6E-06 45.7 8.2 61 345-407 147-207 (208)
163 PRK10872 relA (p)ppGpp synthet 93.3 0.44 9.5E-06 53.1 9.7 64 127-197 665-730 (743)
164 cd04885 ACT_ThrD-I Tandem C-te 93.1 0.53 1.2E-05 35.8 7.4 63 350-417 2-64 (68)
165 cd04904 ACT_AAAH ACT domain of 92.8 0.99 2.1E-05 35.0 8.5 47 130-176 2-49 (74)
166 COG0077 PheA Prephenate dehydr 92.7 0.46 1E-05 46.7 8.0 55 346-401 194-249 (279)
167 PRK08210 aspartate kinase I; R 92.7 3.3 7E-05 43.1 14.8 99 34-158 270-372 (403)
168 PF13840 ACT_7: ACT domain ; P 92.6 0.56 1.2E-05 35.5 6.7 46 126-176 4-53 (65)
169 PRK11092 bifunctional (p)ppGpp 92.4 0.66 1.4E-05 51.6 9.7 64 127-197 625-689 (702)
170 TIGR00719 sda_beta L-serine de 92.2 0.47 1E-05 44.8 7.1 54 123-176 143-198 (208)
171 COG1707 ACT domain-containing 92.1 0.51 1.1E-05 42.4 6.6 47 130-176 4-50 (218)
172 PRK06291 aspartate kinase; Pro 92.1 4.4 9.6E-05 43.0 15.2 111 34-163 320-436 (465)
173 PRK10872 relA (p)ppGpp synthet 91.9 0.85 1.8E-05 50.9 9.8 63 269-337 667-731 (743)
174 PRK09034 aspartate kinase; Rev 91.9 4.3 9.3E-05 43.0 14.7 107 267-381 307-423 (454)
175 PRK09436 thrA bifunctional asp 91.8 3.5 7.6E-05 47.0 14.7 102 266-378 313-431 (819)
176 TIGR00691 spoT_relA (p)ppGpp s 91.5 0.94 2E-05 50.4 9.6 64 127-197 609-673 (683)
177 PF13840 ACT_7: ACT domain ; P 91.5 1.2 2.5E-05 33.8 7.3 35 266-300 4-42 (65)
178 COG1707 ACT domain-containing 91.3 0.61 1.3E-05 41.9 6.3 45 37-81 4-50 (218)
179 PRK09034 aspartate kinase; Rev 91.3 5.5 0.00012 42.2 14.8 110 35-163 308-423 (454)
180 cd04871 ACT_PSP_2 ACT domains 91.1 0.14 3E-06 41.1 2.0 33 270-302 1-34 (84)
181 cd04929 ACT_TPH ACT domain of 90.8 1 2.2E-05 35.2 6.5 46 131-176 3-49 (74)
182 PRK11899 prephenate dehydratas 90.6 1.9 4.2E-05 42.6 9.9 50 128-177 194-244 (279)
183 PRK06382 threonine dehydratase 90.5 1.7 3.7E-05 45.3 9.9 67 124-197 326-397 (406)
184 TIGR00657 asp_kinases aspartat 90.5 6.1 0.00013 41.6 14.2 101 267-378 301-413 (441)
185 PRK11092 bifunctional (p)ppGpp 90.3 1.8 4E-05 48.2 10.5 74 25-104 615-690 (702)
186 KOG2663 Acetolactate synthase, 90.2 0.76 1.6E-05 44.0 6.3 67 126-200 75-143 (309)
187 PRK11790 D-3-phosphoglycerate 90.1 0.64 1.4E-05 48.5 6.4 60 346-409 338-397 (409)
188 PLN02317 arogenate dehydratase 89.9 3 6.5E-05 43.0 10.9 67 346-414 283-364 (382)
189 TIGR00691 spoT_relA (p)ppGpp s 89.9 2 4.4E-05 47.9 10.4 64 268-337 610-674 (683)
190 PRK08818 prephenate dehydrogen 89.8 0.69 1.5E-05 47.6 6.3 50 345-395 294-344 (370)
191 PRK06545 prephenate dehydrogen 89.7 2.2 4.8E-05 43.6 9.9 51 345-395 289-339 (359)
192 cd04906 ACT_ThrD-I_1 First of 89.3 3.2 6.8E-05 33.1 8.5 59 130-197 3-63 (85)
193 PRK11790 D-3-phosphoglycerate 88.9 0.79 1.7E-05 47.8 6.0 50 127-176 337-386 (409)
194 COG0077 PheA Prephenate dehydr 88.8 2.7 5.8E-05 41.4 9.1 50 127-176 193-243 (279)
195 PRK06545 prephenate dehydrogen 88.8 1.5 3.2E-05 44.9 7.8 52 125-176 287-338 (359)
196 COG0317 SpoT Guanosine polypho 88.7 2.1 4.6E-05 47.3 9.3 66 125-197 624-690 (701)
197 PLN02551 aspartokinase 88.7 14 0.0003 39.9 15.4 104 266-379 364-480 (521)
198 PRK09181 aspartate kinase; Val 88.7 8 0.00017 41.2 13.4 102 267-379 328-437 (475)
199 COG0317 SpoT Guanosine polypho 88.6 2.3 4.9E-05 47.1 9.4 73 259-337 617-691 (701)
200 PRK06349 homoserine dehydrogen 88.5 2 4.2E-05 45.2 8.6 65 346-414 348-412 (426)
201 cd04906 ACT_ThrD-I_1 First of 88.0 3.7 8.1E-05 32.7 8.1 30 270-301 3-32 (85)
202 PRK06382 threonine dehydratase 87.9 2.6 5.6E-05 44.0 9.1 68 345-417 329-401 (406)
203 COG2150 Predicted regulator of 87.8 1.8 3.8E-05 38.8 6.5 61 347-409 94-156 (167)
204 COG0527 LysC Aspartokinases [A 87.8 22 0.00048 37.6 15.9 105 266-378 305-418 (447)
205 cd04930 ACT_TH ACT domain of t 87.6 2.2 4.7E-05 36.4 6.8 49 128-176 41-90 (115)
206 PRK08198 threonine dehydratase 87.1 4.8 0.0001 41.8 10.5 38 125-162 324-361 (404)
207 PF05088 Bac_GDH: Bacterial NA 87.0 4.6 9.9E-05 48.7 11.3 103 2-104 447-563 (1528)
208 PRK08818 prephenate dehydrogen 87.0 1.4 3E-05 45.4 6.2 49 127-176 294-343 (370)
209 PRK14630 hypothetical protein; 86.5 8.8 0.00019 34.0 10.3 92 277-372 6-98 (143)
210 TIGR00657 asp_kinases aspartat 86.4 23 0.0005 37.2 15.3 108 34-160 301-413 (441)
211 PRK09181 aspartate kinase; Val 86.2 31 0.00067 36.8 16.1 106 34-162 328-438 (475)
212 TIGR01127 ilvA_1Cterm threonin 86.2 5.6 0.00012 41.0 10.4 66 125-197 302-372 (380)
213 COG0527 LysC Aspartokinases [A 86.2 34 0.00073 36.2 16.2 120 33-176 305-430 (447)
214 PRK12483 threonine dehydratase 86.1 27 0.00059 37.7 15.7 137 267-417 344-505 (521)
215 cd04922 ACT_AKi-HSDH-ThrA_2 AC 86.1 9.1 0.0002 28.1 8.9 45 130-176 3-50 (66)
216 TIGR01127 ilvA_1Cterm threonin 84.7 5.4 0.00012 41.1 9.4 68 345-417 304-376 (380)
217 PLN02551 aspartokinase 84.6 37 0.0008 36.7 15.9 113 34-163 365-482 (521)
218 KOG2663 Acetolactate synthase, 84.6 2.7 5.8E-05 40.4 6.3 67 344-415 75-142 (309)
219 PRK09224 threonine dehydratase 84.6 37 0.0008 36.5 15.9 138 268-417 328-488 (504)
220 PRK13581 D-3-phosphoglycerate 84.5 2.6 5.7E-05 45.5 7.2 63 346-410 452-514 (526)
221 PRK09436 thrA bifunctional asp 83.9 87 0.0019 35.9 22.6 181 125-379 312-503 (819)
222 cd04919 ACT_AK-Hom3_2 ACT doma 83.9 13 0.00029 27.3 9.0 34 130-163 3-39 (66)
223 PLN02550 threonine dehydratase 83.9 26 0.00057 38.3 14.5 134 269-417 418-575 (591)
224 PRK06349 homoserine dehydrogen 83.8 5.2 0.00011 42.0 8.9 52 125-176 345-396 (426)
225 cd04935 ACT_AKiii-DAPDC_1 ACT 83.6 7.5 0.00016 30.2 7.6 56 354-414 12-67 (75)
226 PRK10622 pheA bifunctional cho 83.3 7.2 0.00016 40.4 9.6 51 127-177 296-347 (386)
227 COG0440 IlvH Acetolactate synt 83.2 4.9 0.00011 36.2 7.1 66 128-200 4-70 (163)
228 PRK13581 D-3-phosphoglycerate 83.1 3 6.4E-05 45.1 6.9 52 124-175 448-501 (526)
229 cd04932 ACT_AKiii-LysC-EC_1 AC 82.8 13 0.00027 29.0 8.6 61 348-414 3-67 (75)
230 PRK12483 threonine dehydratase 82.7 70 0.0015 34.6 17.0 132 33-173 343-484 (521)
231 PRK11898 prephenate dehydratas 82.3 6.3 0.00014 39.0 8.3 66 347-414 197-264 (283)
232 cd04924 ACT_AK-Arch_2 ACT doma 81.0 18 0.00039 26.4 8.7 45 130-176 3-50 (66)
233 TIGR01327 PGDH D-3-phosphoglyc 80.9 3.5 7.5E-05 44.6 6.4 63 346-410 451-513 (525)
234 COG0440 IlvH Acetolactate synt 80.7 5.5 0.00012 35.9 6.5 64 347-415 5-69 (163)
235 COG3283 TyrR Transcriptional r 80.5 3.6 7.8E-05 41.9 5.8 75 348-430 2-77 (511)
236 TIGR01327 PGDH D-3-phosphoglyc 80.3 3 6.4E-05 45.1 5.7 52 125-176 448-501 (525)
237 PRK09084 aspartate kinase III; 80.1 64 0.0014 34.1 15.5 101 34-152 305-411 (448)
238 cd04937 ACT_AKi-DapG-BS_2 ACT 79.9 18 0.0004 26.7 8.4 28 130-157 3-33 (64)
239 cd04919 ACT_AK-Hom3_2 ACT doma 79.8 9.5 0.00021 28.1 6.8 34 348-381 3-39 (66)
240 TIGR01270 Trp_5_monoox tryptop 79.5 5.7 0.00012 41.8 7.2 53 346-399 31-85 (464)
241 PRK08198 threonine dehydratase 79.4 12 0.00026 38.9 9.7 69 345-417 326-398 (404)
242 TIGR01268 Phe4hydrox_tetr phen 78.2 8.6 0.00019 40.3 8.0 66 346-414 16-82 (436)
243 PRK09084 aspartate kinase III; 78.2 38 0.00083 35.8 13.1 114 266-392 304-429 (448)
244 cd04922 ACT_AKi-HSDH-ThrA_2 AC 78.1 20 0.00043 26.2 8.1 32 270-301 3-37 (66)
245 cd04913 ACT_AKii-LysC-BS-like_ 77.9 13 0.00029 27.6 7.3 42 135-176 9-51 (75)
246 COG2150 Predicted regulator of 77.3 3.8 8.3E-05 36.7 4.4 36 34-69 94-129 (167)
247 PRK10820 DNA-binding transcrip 76.0 7.1 0.00015 42.1 7.1 36 348-383 2-37 (520)
248 cd04912 ACT_AKiii-LysC-EC-like 76.0 27 0.00058 26.9 8.5 63 129-198 2-67 (75)
249 cd04932 ACT_AKiii-LysC-EC_1 AC 75.5 29 0.00063 26.9 8.6 43 130-176 3-48 (75)
250 PRK08526 threonine dehydratase 75.5 44 0.00096 34.8 12.5 72 345-421 325-400 (403)
251 PRK14646 hypothetical protein; 75.5 37 0.0008 30.5 10.4 94 279-374 7-103 (155)
252 PRK14636 hypothetical protein; 74.6 37 0.0008 31.2 10.3 95 277-373 3-100 (176)
253 PRK14645 hypothetical protein; 74.4 46 0.001 29.8 10.7 95 277-373 7-104 (154)
254 PRK08961 bifunctional aspartat 74.4 49 0.0011 38.1 13.6 132 266-413 320-460 (861)
255 cd04890 ACT_AK-like_1 ACT doma 74.4 23 0.00049 25.8 7.5 51 354-412 11-61 (62)
256 cd04937 ACT_AKi-DapG-BS_2 ACT 74.1 31 0.00067 25.5 8.2 28 270-297 3-33 (64)
257 PRK14634 hypothetical protein; 74.0 37 0.0008 30.5 10.0 94 278-373 6-102 (155)
258 PRK08961 bifunctional aspartat 73.0 1E+02 0.0022 35.6 15.7 103 34-156 321-429 (861)
259 cd04916 ACT_AKiii-YclM-BS_2 AC 72.8 34 0.00073 24.9 9.0 34 130-163 3-39 (66)
260 PRK14637 hypothetical protein; 72.5 46 0.00099 29.8 10.1 92 278-373 7-100 (151)
261 PRK14640 hypothetical protein; 72.4 48 0.001 29.6 10.3 91 280-374 7-100 (152)
262 PRK09466 metL bifunctional asp 72.1 1.4E+02 0.003 34.3 16.2 104 34-159 316-425 (810)
263 cd04912 ACT_AKiii-LysC-EC-like 72.0 31 0.00066 26.5 8.0 30 270-299 3-35 (75)
264 cd04892 ACT_AK-like_2 ACT doma 71.9 33 0.00071 24.4 8.3 33 130-162 2-37 (65)
265 cd04891 ACT_AK-LysC-DapG-like_ 71.7 13 0.00028 26.3 5.6 42 135-176 8-50 (61)
266 PRK14647 hypothetical protein; 71.6 50 0.0011 29.7 10.4 90 281-374 10-102 (159)
267 PRK08526 threonine dehydratase 71.6 27 0.00059 36.4 9.9 67 124-197 322-393 (403)
268 PRK00092 ribosome maturation p 71.4 52 0.0011 29.3 10.4 90 280-373 8-100 (154)
269 PLN02550 threonine dehydratase 71.0 1.5E+02 0.0033 32.6 15.6 128 35-172 417-553 (591)
270 PRK09224 threonine dehydratase 70.7 47 0.001 35.7 11.7 121 34-162 327-456 (504)
271 COG4492 PheB ACT domain-contai 70.5 19 0.0004 31.4 6.8 52 125-176 69-121 (150)
272 PRK14639 hypothetical protein; 69.9 44 0.00095 29.4 9.4 86 285-374 3-91 (140)
273 TIGR01124 ilvA_2Cterm threonin 69.8 1.4E+02 0.003 32.1 15.0 138 267-417 324-484 (499)
274 PRK09466 metL bifunctional asp 69.6 70 0.0015 36.6 13.2 101 266-377 315-425 (810)
275 PRK14633 hypothetical protein; 69.6 62 0.0013 28.8 10.4 90 281-374 6-97 (150)
276 COG3978 Acetolactate synthase 69.5 36 0.00078 26.9 7.5 47 346-392 3-51 (86)
277 cd04868 ACT_AK-like ACT domain 69.2 18 0.0004 25.1 5.9 33 130-162 2-37 (60)
278 cd04868 ACT_AK-like ACT domain 69.1 11 0.00023 26.4 4.6 32 348-379 2-36 (60)
279 cd04935 ACT_AKiii-DAPDC_1 ACT 68.9 52 0.0011 25.5 9.0 57 135-198 11-67 (75)
280 PRK11898 prephenate dehydratas 67.9 35 0.00077 33.7 9.3 50 127-176 195-246 (283)
281 PRK14638 hypothetical protein; 66.6 76 0.0016 28.3 10.3 91 280-373 9-102 (150)
282 PLN02317 arogenate dehydratase 65.8 44 0.00095 34.6 9.7 49 128-176 283-346 (382)
283 cd04923 ACT_AK-LysC-DapG-like_ 65.8 46 0.001 23.7 8.0 31 130-160 2-35 (63)
284 PRK08841 aspartate kinase; Val 65.6 53 0.0011 34.1 10.4 95 266-378 256-350 (392)
285 cd04890 ACT_AK-like_1 ACT doma 65.1 41 0.00089 24.4 7.2 37 136-176 11-47 (62)
286 cd04891 ACT_AK-LysC-DapG-like_ 65.0 23 0.0005 24.9 5.7 27 353-379 8-34 (61)
287 cd04934 ACT_AK-Hom3_1 CT domai 64.5 38 0.00083 26.1 7.1 54 354-414 12-65 (73)
288 cd04913 ACT_AKii-LysC-BS-like_ 64.0 19 0.00042 26.7 5.3 27 353-379 9-35 (75)
289 cd04933 ACT_AK1-AT_1 ACT domai 64.0 38 0.00082 26.6 7.0 58 353-414 11-70 (78)
290 cd04936 ACT_AKii-LysC-BS-like_ 63.3 52 0.0011 23.5 8.1 31 130-160 2-35 (63)
291 PTZ00324 glutamate dehydrogena 62.8 43 0.00093 38.8 9.7 80 21-100 215-299 (1002)
292 cd04924 ACT_AK-Arch_2 ACT doma 62.8 43 0.00092 24.3 6.9 34 348-381 3-39 (66)
293 PRK14632 hypothetical protein; 62.1 92 0.002 28.5 10.1 89 281-373 10-100 (172)
294 TIGR01268 Phe4hydrox_tetr phen 61.3 53 0.0011 34.6 9.4 49 128-176 16-65 (436)
295 cd04921 ACT_AKi-HSDH-ThrA-like 60.8 72 0.0016 24.3 9.0 37 129-165 2-41 (80)
296 COG0779 Uncharacterized protei 60.6 1E+02 0.0022 27.7 9.8 88 279-372 8-100 (153)
297 PRK14643 hypothetical protein; 59.7 1.1E+02 0.0024 27.7 10.1 92 280-374 10-107 (164)
298 COG3978 Acetolactate synthase 55.5 75 0.0016 25.2 7.0 65 128-201 3-69 (86)
299 cd04892 ACT_AK-like_2 ACT doma 55.3 27 0.00058 24.9 4.6 32 348-379 2-36 (65)
300 cd04923 ACT_AK-LysC-DapG-like_ 55.2 57 0.0012 23.2 6.4 30 349-378 3-35 (63)
301 cd04918 ACT_AK1-AT_2 ACT domai 54.6 86 0.0019 23.2 8.0 35 270-304 3-39 (65)
302 cd04918 ACT_AK1-AT_2 ACT domai 54.3 87 0.0019 23.2 8.5 35 130-164 3-39 (65)
303 cd04920 ACT_AKiii-DAPDC_2 ACT 54.2 86 0.0019 23.1 7.6 27 130-156 2-31 (63)
304 TIGR02079 THD1 threonine dehyd 53.6 2.2E+02 0.0049 29.6 12.7 69 345-417 324-393 (409)
305 cd04921 ACT_AKi-HSDH-ThrA-like 52.8 75 0.0016 24.2 7.0 33 270-302 3-38 (80)
306 PRK00907 hypothetical protein; 52.7 83 0.0018 25.7 7.3 64 127-197 16-83 (92)
307 PRK10820 DNA-binding transcrip 52.3 17 0.00037 39.2 4.3 36 130-165 2-37 (520)
308 cd04916 ACT_AKiii-YclM-BS_2 AC 51.4 90 0.002 22.5 8.2 32 270-301 3-37 (66)
309 COG4492 PheB ACT domain-contai 50.4 61 0.0013 28.3 6.4 57 26-82 63-120 (150)
310 PF02576 DUF150: Uncharacteris 50.1 72 0.0016 27.9 7.2 84 285-372 2-88 (141)
311 PF05088 Bac_GDH: Bacterial NA 50.1 98 0.0021 37.9 10.3 86 255-340 474-566 (1528)
312 TIGR02079 THD1 threonine dehyd 50.0 1.3E+02 0.0029 31.3 10.4 68 124-198 321-390 (409)
313 PRK14635 hypothetical protein; 46.8 1.9E+02 0.0041 26.0 9.6 96 276-375 3-103 (162)
314 PRK08841 aspartate kinase; Val 46.6 3.6E+02 0.0077 28.0 15.4 113 47-202 266-378 (392)
315 cd04915 ACT_AK-Ectoine_2 ACT d 46.6 58 0.0012 24.4 5.3 43 348-393 4-49 (66)
316 PRK08639 threonine dehydratase 46.3 3.1E+02 0.0067 28.6 12.5 70 344-417 334-404 (420)
317 cd04936 ACT_AKii-LysC-BS-like_ 46.0 45 0.00098 23.8 4.6 30 349-378 3-35 (63)
318 TIGR01270 Trp_5_monoox tryptop 45.9 59 0.0013 34.4 6.8 52 125-176 28-81 (464)
319 cd04933 ACT_AK1-AT_1 ACT domai 45.2 1.2E+02 0.0025 23.8 7.0 38 135-176 11-48 (78)
320 cd04934 ACT_AK-Hom3_1 CT domai 44.3 1.1E+02 0.0024 23.4 6.7 53 137-198 13-65 (73)
321 COG2061 ACT-domain-containing 44.0 2.4E+02 0.0052 25.3 9.3 30 269-298 6-35 (170)
322 PRK08639 threonine dehydratase 43.8 1.4E+02 0.0031 31.1 9.5 68 124-198 332-401 (420)
323 PRK14644 hypothetical protein; 40.8 2.5E+02 0.0054 24.6 9.0 76 287-372 6-86 (136)
324 TIGR01124 ilvA_2Cterm threonin 40.1 4.4E+02 0.0096 28.3 12.6 67 345-417 324-390 (499)
325 PRK00907 hypothetical protein; 39.8 1E+02 0.0022 25.2 6.0 63 269-337 18-84 (92)
326 COG3603 Uncharacterized conser 37.7 50 0.0011 28.2 3.9 50 354-416 74-123 (128)
327 COG3603 Uncharacterized conser 37.6 1.1E+02 0.0024 26.2 5.9 39 124-162 59-100 (128)
328 PRK14641 hypothetical protein; 37.0 3.3E+02 0.0072 24.9 9.8 81 290-374 20-107 (173)
329 PF04083 Abhydro_lipase: Parti 36.2 88 0.0019 23.5 4.8 32 53-84 2-33 (63)
330 cd04920 ACT_AKiii-DAPDC_2 ACT 33.1 2E+02 0.0043 21.1 8.1 27 270-296 2-31 (63)
331 KOG2797 Prephenate dehydratase 33.1 3.4E+02 0.0075 27.3 9.4 36 347-382 282-317 (377)
332 PRK14631 hypothetical protein; 32.7 3.9E+02 0.0084 24.4 11.3 93 280-374 9-120 (174)
333 cd04914 ACT_AKi-DapG-BS_1 ACT 31.9 76 0.0017 23.8 3.9 32 130-161 3-35 (67)
334 cd04914 ACT_AKi-DapG-BS_1 ACT 31.3 1.1E+02 0.0023 23.0 4.6 29 349-377 4-33 (67)
335 PLN02828 formyltetrahydrofolat 30.3 3.9E+02 0.0084 26.3 9.4 31 52-82 1-33 (268)
336 cd04917 ACT_AKiii-LysC-EC_2 AC 29.8 2.2E+02 0.0048 20.7 7.7 25 129-153 2-29 (64)
337 COG2902 NAD-specific glutamate 29.8 1E+02 0.0022 37.0 5.9 46 21-66 72-119 (1592)
338 PF04083 Abhydro_lipase: Parti 29.7 1.4E+02 0.003 22.4 4.9 33 286-318 2-34 (63)
339 PRK02047 hypothetical protein; 29.7 2.8E+02 0.0061 22.4 7.0 64 268-337 16-83 (91)
340 PRK02047 hypothetical protein; 29.1 3.1E+02 0.0067 22.1 7.5 65 126-197 14-82 (91)
341 PRK02001 hypothetical protein; 27.3 4.5E+02 0.0098 23.5 8.6 82 286-374 12-93 (152)
342 COG3283 TyrR Transcriptional r 26.3 1.5E+02 0.0033 30.6 5.8 33 130-162 2-34 (511)
343 PRK05925 aspartate kinase; Pro 25.4 7E+02 0.015 26.3 11.0 103 266-377 298-405 (440)
344 COG2061 ACT-domain-containing 24.4 4.5E+02 0.0098 23.6 7.7 75 347-429 6-85 (170)
345 PRK00341 hypothetical protein; 23.6 3.2E+02 0.007 22.1 6.4 62 269-337 18-83 (91)
346 cd07247 SgaA_N_like N-terminal 23.2 3.3E+02 0.0071 21.6 6.6 51 126-183 60-110 (114)
347 PTZ00324 glutamate dehydrogena 23.2 5.6E+02 0.012 30.1 10.2 79 255-333 216-299 (1002)
348 cd07247 SgaA_N_like N-terminal 23.1 2.9E+02 0.0063 21.9 6.3 51 33-89 60-110 (114)
349 cd04915 ACT_AK-Ectoine_2 ACT d 22.3 3.3E+02 0.0072 20.1 8.9 34 129-162 3-38 (66)
350 PRK14633 hypothetical protein; 22.2 5.6E+02 0.012 22.7 8.9 88 48-154 6-95 (150)
351 PRK00341 hypothetical protein; 21.7 4.4E+02 0.0094 21.3 7.2 62 128-197 17-82 (91)
352 cd04911 ACT_AKiii-YclM-BS_1 AC 20.7 3.4E+02 0.0074 21.3 5.7 54 355-415 13-66 (76)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=4.6e-30 Score=286.15 Aligned_cols=198 Identities=20% Similarity=0.277 Sum_probs=167.7
Q ss_pred CCCCCCCCCChH----HHHHHhhc-CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCE
Q 012814 1 MANAYWPYFDPE----YESLSLRI-NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGW 74 (456)
Q Consensus 1 ~~~~Y~~~~~~~----~~~~~~~~-~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~ 74 (456)
|+++||.+++|+ |++++... .+|.|.++++++.++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+
T Consensus 638 ~~~~yf~~~~~~~I~~h~~~~~~~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~ 717 (854)
T PRK01759 638 CPEDYFLRNTPKQIAWHALLLLDFRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGY 717 (854)
T ss_pred CCcHHhcCCCHHHHHHHHHHHHhcCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCE
Confidence 689999999999 77777654 57888899999999999999999999999999999999999999999998 8999
Q ss_pred EEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC----CC---------cccCCcccccccCCCceEEEEEEeCCcccH
Q 012814 75 FMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT----AG---------AKTWPSKQVGVHSVGDHTAIELIGRDRPGL 141 (456)
Q Consensus 75 ~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~----~~---------~~~~~~~~v~~~~~~~~t~i~v~~~DrpGL 141 (456)
++|+|+|++++|.++. +..++.|++.|...+... .. +..++++.++++.+..+|+|+|.+.|||||
T Consensus 718 alD~F~V~d~~g~~~~-~~~~~~l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGL 796 (854)
T PRK01759 718 VLDSFIVTELNGKLLE-FDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGL 796 (854)
T ss_pred EEEEEEEeCCCCCCCC-HHHHHHHHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHH
Confidence 9999999999998875 345555555444332211 10 112334456667888999999999999999
Q ss_pred HHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814 142 LSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (456)
Q Consensus 142 L~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~ 201 (456)
||+|+++|.++|++|+.|+|+|.|+++.|+|||++ ..|.++.++++ +.|+++|.++|+
T Consensus 797 L~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l~ 854 (854)
T PRK01759 797 LAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTN-QQGQALDEEER-KALKSRLLSNLS 854 (854)
T ss_pred HHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhC
Confidence 99999999999999999999999999999999999 58999987666 999999998874
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=1.3e-29 Score=283.55 Aligned_cols=199 Identities=19% Similarity=0.271 Sum_probs=168.6
Q ss_pred CCCCCCCCCChH----HHHHHhhc--CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCC
Q 012814 1 MANAYWPYFDPE----YESLSLRI--NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG 73 (456)
Q Consensus 1 ~~~~Y~~~~~~~----~~~~~~~~--~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g 73 (456)
|+++||.+++|+ |.+++... .+|.|.++++++.++++|+|+++|+||||++||++|+.+|+||++|+|+| .+|
T Consensus 661 ~~~~yf~~~~~~~I~~h~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg 740 (884)
T PRK05007 661 CRADYFLRHTPNQLAWHARHLLQHDLDKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDG 740 (884)
T ss_pred CChHHhcCCCHHHHHHHHHHHHhccCCCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCC
Confidence 689999999999 88888765 57889999999999999999999999999999999999999999999998 678
Q ss_pred EEEEEEEEEeCCCCCCCChhHHH----HHHHHHCCCCCCCC-C---------cccCCcccccccCCCceEEEEEEeCCcc
Q 012814 74 WFMDVFHVIDQQGKKITDGKTID----YIEKALGPKGHITA-G---------AKTWPSKQVGVHSVGDHTAIELIGRDRP 139 (456)
Q Consensus 74 ~~~d~f~V~~~~g~~~~~~~~~~----~L~~~L~~~l~~~~-~---------~~~~~~~~v~~~~~~~~t~i~v~~~Drp 139 (456)
+++|+|+|++++|.++++ +.++ .|+++|.+...... . +..++++.++++.+..+|+|+|.+.|||
T Consensus 741 ~alD~F~V~d~~g~~~~~-~~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRp 819 (884)
T PRK05007 741 MAMDTFIVLEPDGSPLSQ-DRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQP 819 (884)
T ss_pred eEEEEEEEECCCCCCCCH-HHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCch
Confidence 999999999999988743 3444 44555544321110 0 1112344556678889999999999999
Q ss_pred cHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814 140 GLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (456)
Q Consensus 140 GLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~ 202 (456)
||||+|+++|.++|++|++|+|+|.|+++.|+|||++ ..|.++. +++.+.|+++|.++|..
T Consensus 820 GLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 820 GLLARVGKIFADLGISLHGARITTIGERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred HHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999 5888987 67889999999999865
No 3
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=5.5e-29 Score=278.47 Aligned_cols=202 Identities=18% Similarity=0.288 Sum_probs=168.1
Q ss_pred CCCCCCCCCChH----HHHHHhhc---CCCEEEEecCCC---CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE
Q 012814 1 MANAYWPYFDPE----YESLSLRI---NPPRASVDNSSC---PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (456)
Q Consensus 1 ~~~~Y~~~~~~~----~~~~~~~~---~~p~V~v~~~~~---~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t 70 (456)
|+++||.+++|+ |++++... ++|.|.+.+.+. .+.++|+|+++||||||+++|++|+.+|+||++|+|+|
T Consensus 660 ~~~~Y~l~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~T 739 (895)
T PRK00275 660 LGDDYFLRHTAGDIAWHTEAILQHPDDGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIIT 739 (895)
T ss_pred CCcHHhcCCCHHHHHHHHHHHHhcccCCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE
Confidence 789999999999 88888764 467777877765 58999999999999999999999999999999999986
Q ss_pred -eCCEEEEEEEEEeCCCCCCC-ChhHHHHHHHHHCCCCCCC----C--Cc---------ccCCcccccccCCCceEEEEE
Q 012814 71 -DGGWFMDVFHVIDQQGKKIT-DGKTIDYIEKALGPKGHIT----A--GA---------KTWPSKQVGVHSVGDHTAIEL 133 (456)
Q Consensus 71 -~~g~~~d~f~V~~~~g~~~~-~~~~~~~L~~~L~~~l~~~----~--~~---------~~~~~~~v~~~~~~~~t~i~v 133 (456)
.+|+++|+|+|++++|.++. ++.++++|++.|...+... . .. ..++.+.+.++++..+|+|+|
T Consensus 740 t~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V 819 (895)
T PRK00275 740 SSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEI 819 (895)
T ss_pred cCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEE
Confidence 78999999999999998753 3355555555544332211 1 00 112233345567788999999
Q ss_pred EeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcCC
Q 012814 134 IGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC 203 (456)
Q Consensus 134 ~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~~ 203 (456)
.+.||||||++|+++|+.+|+||++|+|+|.|+++.|+|||++ .+|.++.+++++++|+++|.++|...
T Consensus 820 ~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 820 IAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred EECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999 58999988889999999999999764
No 4
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1.3e-27 Score=265.93 Aligned_cols=199 Identities=21% Similarity=0.276 Sum_probs=162.2
Q ss_pred CCCCCCCCCChH----HHHHHhhc--CCCEEEEec-CCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eC
Q 012814 1 MANAYWPYFDPE----YESLSLRI--NPPRASVDN-SSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG 72 (456)
Q Consensus 1 ~~~~Y~~~~~~~----~~~~~~~~--~~p~V~v~~-~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~ 72 (456)
|+++||.+++++ |++++..+ +.|.|.+.. .+..+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+
T Consensus 649 l~~~Y~~~~~~~~I~~h~~~~~~~~~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~ 728 (869)
T PRK04374 649 MPDENFLRFRPEQLAWQAASLIEVEIGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPH 728 (869)
T ss_pred CCchhhcCCCHHHHHHHHHHHHhcCCCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCC
Confidence 789999999999 88888764 456666554 67779999999999999999999999999999999999997 89
Q ss_pred CEEEEEEEEEeCCCCCCCC-hhHHHHHHHHHCCCCCCCC-Cc----------ccCCcccccccCCCceEEEEEEeCCccc
Q 012814 73 GWFMDVFHVIDQQGKKITD-GKTIDYIEKALGPKGHITA-GA----------KTWPSKQVGVHSVGDHTAIELIGRDRPG 140 (456)
Q Consensus 73 g~~~d~f~V~~~~g~~~~~-~~~~~~L~~~L~~~l~~~~-~~----------~~~~~~~v~~~~~~~~t~i~v~~~DrpG 140 (456)
|+++|+|+|++++|..... ....+.|+++|.+...... .. ..++++.+.++++.++|+|+|.+.||||
T Consensus 729 g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpG 808 (869)
T PRK04374 729 DAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPG 808 (869)
T ss_pred CEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCc
Confidence 9999999999988864211 1345555666665322111 01 1123334455677889999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814 141 LLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (456)
Q Consensus 141 LL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~ 201 (456)
||++|+++|+.+|+||+.|+|+|.|+++.|+|||++ .+|.++.++++ +.|+++|.++|.
T Consensus 809 LLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 809 LLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD-EHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred HHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 47888877666 999999998885
No 5
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.96 E-value=1.3e-27 Score=267.92 Aligned_cols=198 Identities=22% Similarity=0.273 Sum_probs=167.3
Q ss_pred CCCCCCCCCChH----HHHHHhhc---CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE-EeC
Q 012814 1 MANAYWPYFDPE----YESLSLRI---NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-SDG 72 (456)
Q Consensus 1 ~~~~Y~~~~~~~----~~~~~~~~---~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~-t~~ 72 (456)
|+++||.+++|+ |++++..+ ++|.|.+++....+.++|+|+++||||||++||++|+.+|+||++|+|+ |.+
T Consensus 627 ~~~~y~~~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~ 706 (850)
T TIGR01693 627 AYDDYFLRFTHKEIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKD 706 (850)
T ss_pred CCchhhcCCCHHHHHHHHHHHHhcccCCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecC
Confidence 789999999999 88888764 4788988887778999999999999999999999999999999999999 589
Q ss_pred CEEEEEEEEEeCCCCCCCChhHHHHHH----HHHCCCCCCCC--Cc-----------ccCCcccccccCCCceEEEEEEe
Q 012814 73 GWFMDVFHVIDQQGKKITDGKTIDYIE----KALGPKGHITA--GA-----------KTWPSKQVGVHSVGDHTAIELIG 135 (456)
Q Consensus 73 g~~~d~f~V~~~~g~~~~~~~~~~~L~----~~L~~~l~~~~--~~-----------~~~~~~~v~~~~~~~~t~i~v~~ 135 (456)
|+++|+|+|++.+|.++.+++.++.|+ ++|.+....+. .. ..++++.++++.+..+|+|+|.|
T Consensus 707 g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~ 786 (850)
T TIGR01693 707 GVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRA 786 (850)
T ss_pred CEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEE
Confidence 999999999999998877765555554 45544321111 00 11233445667788999999999
Q ss_pred CCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 136 RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 136 ~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
.||||||++|+++|+++|+||++|+|.|.|+++.|+|++++ ..|.|+.+ ++++.|+++|.++|
T Consensus 787 ~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 787 LDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred CCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 58999987 78899999998876
No 6
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1.4e-27 Score=266.05 Aligned_cols=196 Identities=20% Similarity=0.323 Sum_probs=160.2
Q ss_pred CCCCCCCCCChH----HHHHHhhc---CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eC
Q 012814 1 MANAYWPYFDPE----YESLSLRI---NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG 72 (456)
Q Consensus 1 ~~~~Y~~~~~~~----~~~~~~~~---~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~ 72 (456)
|+++||.+++|+ |++++... ++|.|.+.+.+..+.++|+|+++||||||++||++|+.+|+||++|+|+| .+
T Consensus 637 ~~~~Yf~~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~ 716 (856)
T PRK03059 637 LDVGYFLRHDAADIAWHTRHLYRHVDTDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRH 716 (856)
T ss_pred CChHHhccCCHHHHHHHHHHHHhcccCCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCC
Confidence 689999999999 88888764 46888888888889999999999999999999999999999999999986 89
Q ss_pred CEEEEEEEEEeCCCCCCCChhHHHHHHHH----HCCCCCCCCC--cc---------cCCcccccccCCCceEEEEEEeCC
Q 012814 73 GWFMDVFHVIDQQGKKITDGKTIDYIEKA----LGPKGHITAG--AK---------TWPSKQVGVHSVGDHTAIELIGRD 137 (456)
Q Consensus 73 g~~~d~f~V~~~~g~~~~~~~~~~~L~~~----L~~~l~~~~~--~~---------~~~~~~v~~~~~~~~t~i~v~~~D 137 (456)
|+++|+|+|.++.|. ..++..+++|++. |.+....... .+ .++.+.+.+.++.++|+|+|.++|
T Consensus 717 g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~D 795 (856)
T PRK03059 717 GYALDTFQVLDPEED-VHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSAND 795 (856)
T ss_pred CeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCC
Confidence 999999999998777 3344455555554 4443221110 11 111223344667789999999999
Q ss_pred cccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814 138 RPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (456)
Q Consensus 138 rpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~ 201 (456)
|||||++|+++|+.+|+||++|+|+|.|+++.|+|||+++ ++.+++++++|+++|.++|+
T Consensus 796 rpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~----~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 796 RPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS----GLSDNRLQIQLETELLDALA 855 (856)
T ss_pred cchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999653 24567899999999998875
No 7
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=4.5e-27 Score=265.25 Aligned_cols=203 Identities=23% Similarity=0.329 Sum_probs=171.3
Q ss_pred CCCCCCCCCChH----HHHHHhhc----CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-e
Q 012814 1 MANAYWPYFDPE----YESLSLRI----NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D 71 (456)
Q Consensus 1 ~~~~Y~~~~~~~----~~~~~~~~----~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~ 71 (456)
|+++||.+++++ |++++... .++.|.+.+....+.++|+|+++||||||++||++|+.+|+||++|+|+| .
T Consensus 690 ~~~~yf~~~~~~~i~~h~~~~~~~~~~~~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~ 769 (931)
T PRK05092 690 HYPAYWLAVDLDTQARHARFIRDADDAGRPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTT 769 (931)
T ss_pred CCcHHhcCCCHHHHHHHHHHHHhccccCCCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEec
Confidence 789999999999 88888764 34688888888889999999999999999999999999999999999998 7
Q ss_pred CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCC----CCC-------------cccCCcccccccCCCceEEEEEE
Q 012814 72 GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI----TAG-------------AKTWPSKQVGVHSVGDHTAIELI 134 (456)
Q Consensus 72 ~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~----~~~-------------~~~~~~~~v~~~~~~~~t~i~v~ 134 (456)
+|+++|+|+|++++|.+..+++.++.|++.|...+.. +.. +..++.+.++++.+..+|+|+|.
T Consensus 770 dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~ 849 (931)
T PRK05092 770 DGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVN 849 (931)
T ss_pred CCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEE
Confidence 9999999999999888766666666666555433211 110 01122334555677789999999
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcCCC
Q 012814 135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD 204 (456)
Q Consensus 135 ~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~~~ 204 (456)
+.||||||++|+++|+++|+||.+|+|.|.++++.|+|+|++ .+|.++.++++++.|+++|.++|.++.
T Consensus 850 ~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~~ 918 (931)
T PRK05092 850 GRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEGE 918 (931)
T ss_pred ECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999 589999998899999999999998753
No 8
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-26 Score=245.61 Aligned_cols=199 Identities=22% Similarity=0.264 Sum_probs=162.8
Q ss_pred CCCCCCCCCChH----HHHHHhhc--CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCC
Q 012814 1 MANAYWPYFDPE----YESLSLRI--NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG 73 (456)
Q Consensus 1 ~~~~Y~~~~~~~----~~~~~~~~--~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g 73 (456)
++.+||.+++++ |++++.+. ++|.|.+...+..+.++|+|++||+|.||+.+|+.+...|+||++|+|+| .+|
T Consensus 644 ~~~~yflr~~~~~iawH~~~l~~~~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG 723 (867)
T COG2844 644 CYANYFLRHSARDIAWHARHLVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG 723 (867)
T ss_pred ccccceeecCHHHHhHHHHHHHhhhccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCC
Confidence 467899999999 99999876 78999988888889999999999999999999999999999999999997 899
Q ss_pred EEEEEEEEEeCCCCCCCChhHHHHHHH----HHCCCCCCCCC----------cccCCcccccccCCCceEEEEEEeCCcc
Q 012814 74 WFMDVFHVIDQQGKKITDGKTIDYIEK----ALGPKGHITAG----------AKTWPSKQVGVHSVGDHTAIELIGRDRP 139 (456)
Q Consensus 74 ~~~d~f~V~~~~g~~~~~~~~~~~L~~----~L~~~l~~~~~----------~~~~~~~~v~~~~~~~~t~i~v~~~Drp 139 (456)
+++|+|+|.+++|.++.+ .+...++. ++...-..+.. +..+|++.+.+..+...|+|+|.+.|||
T Consensus 724 ~alDtfiv~~~~g~~~~~-dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRp 802 (867)
T COG2844 724 YALDTFIVLEPDGFPVEE-DRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRP 802 (867)
T ss_pred ceeeeEEEecCCCCccch-hHHHHHHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcc
Confidence 999999999999988773 34444433 33332111111 1123344444566678999999999999
Q ss_pred cHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814 140 GLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (456)
Q Consensus 140 GLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~ 202 (456)
|||++|+++|++++++|++|+|+|.|+++.|+|||++ ..+.++. ++..+.+.+.|.+++..
T Consensus 803 GLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~-~~~~~l~-~~~~q~l~~~ll~al~~ 863 (867)
T COG2844 803 GLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTD-ADGQALN-AELRQSLLQRLLEALLP 863 (867)
T ss_pred cHHHHHHHHHHhcccceeeeeeccccccceeEEEEec-cccccCC-HHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999 5899985 45556666666666654
No 9
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=3.5e-26 Score=255.11 Aligned_cols=164 Identities=21% Similarity=0.388 Sum_probs=148.3
Q ss_pred CCCCCEEEEEecCCCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEe-cCCceEEEEEEEccCCCCCCCHHHHHH
Q 012814 252 PSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS-DGPHASQEYYIRHMDGCILDTEGEKER 330 (456)
Q Consensus 252 ~~~~~~v~v~n~~~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~ 330 (456)
...+|.|.++|.++.++++|+|+++||||||++|+++|+.+|+||.+|+|.| .+|+++|+|+|++.+|.++. ++.+++
T Consensus 661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~ 739 (854)
T PRK01759 661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQ 739 (854)
T ss_pred cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence 3457888899999999999999999999999999999999999999999998 58999999999999999885 578889
Q ss_pred HHHHHHHHHhh--------cC--------------------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 012814 331 VIKCLEAAIRR--------RV--------------------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV 382 (456)
Q Consensus 331 l~~~L~~~l~~--------r~--------------------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~ 382 (456)
|++.|.+++.. +. ...|+|||.+.|||||||+|+++|.++|++|+.|||+|+
T Consensus 740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~ 819 (854)
T PRK01759 740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI 819 (854)
T ss_pred HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc
Confidence 99999888631 00 135899999999999999999999999999999999999
Q ss_pred CceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814 383 GEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM 416 (456)
Q Consensus 383 g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~ 416 (456)
|++++|+|||+|.+|.|+++++.++|+++|.+++
T Consensus 820 gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 820 GEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999766699999998874
No 10
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=3.8e-26 Score=255.65 Aligned_cols=163 Identities=23% Similarity=0.356 Sum_probs=149.2
Q ss_pred CCCEEEEEecCCCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec-CCceEEEEEEEccCCCCCCCHHHHHHHH
Q 012814 254 FKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTEGEKERVI 332 (456)
Q Consensus 254 ~~~~v~v~n~~~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~ 332 (456)
.+|.|.++|.++.++++|+|+++||||||++|+++|+.+|+||.+|+|+|. +|+++|+|+|++.+|.+++ ++.+++|+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~ 765 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR 765 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence 578888999999999999999999999999999999999999999999987 6799999999999999884 57888999
Q ss_pred HHHHHHHhhc---------C--------------------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 012814 333 KCLEAAIRRR---------V--------------------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG 383 (456)
Q Consensus 333 ~~L~~~l~~r---------~--------------------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g 383 (456)
+.|.+++..+ . +..|+|||.+.|||||||+|+++|.++|++|.+|||+|+|
T Consensus 766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g 845 (884)
T PRK05007 766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG 845 (884)
T ss_pred HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence 9999887321 0 1358999999999999999999999999999999999999
Q ss_pred ceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 384 EQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 384 ~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
++++|+|||++.+|.|++++.+++|+++|.+++-
T Consensus 846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 846 ERVEDLFILATADRRALNEELQQELRQRLTEALN 879 (884)
T ss_pred ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998788999999999875
No 11
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=5.6e-24 Score=235.30 Aligned_cols=173 Identities=21% Similarity=0.229 Sum_probs=143.8
Q ss_pred CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHH
Q 012814 21 NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEK 100 (456)
Q Consensus 21 ~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~ 100 (456)
.+|.|.+.+.. .+.++|+|+|+||||||++||++|+.+|+||++|+|+|.+|+++|+|+|.++.|.+...+...+.|++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~ 664 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR 664 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence 67899998888 89999999999999999999999999999999999999999999999999988876544556777787
Q ss_pred HHCCCCCCCC---Ccc------------cCCcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC
Q 012814 101 ALGPKGHITA---GAK------------TWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN 165 (456)
Q Consensus 101 ~L~~~l~~~~---~~~------------~~~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~ 165 (456)
+|.+.+.... ..+ .++...+.+..+.++|+|+|.+.||||||++|+++|+++|+||++|+|.|.|
T Consensus 665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g 744 (774)
T PRK03381 665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG 744 (774)
T ss_pred HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 7777432110 010 0111223345666799999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 166 RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 166 ~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
+++.|+|||++ .+|.++.++ ++.|+++|.
T Consensus 745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence 99999999999 589999764 678877764
No 12
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.92 E-value=1.7e-23 Score=234.85 Aligned_cols=164 Identities=24% Similarity=0.312 Sum_probs=148.7
Q ss_pred CCCEEEEEecCCCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEe-cCCceEEEEEEEccCCCCCCCHHHHHHHH
Q 012814 254 FKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS-DGPHASQEYYIRHMDGCILDTEGEKERVI 332 (456)
Q Consensus 254 ~~~~v~v~n~~~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~ 332 (456)
..|.|.++|....++++|+|+++||||||++|+++|+.+|+||.+|+|+| .+|+++|+|+|++.+|.++.+++.+++|+
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 46788888877799999999999999999999999999999999999995 58999999999999999998888899999
Q ss_pred HHHHHHHhh----------c--C--------------------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEe
Q 012814 333 KCLEAAIRR----------R--V--------------------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVS 380 (456)
Q Consensus 333 ~~L~~~l~~----------r--~--------------------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~ 380 (456)
+.|.+++.. + . +..|+|+|.|.|||||||+|+++|.++|++|++|+|.
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~ 813 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT 813 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 998887631 0 0 1258999999999999999999999999999999999
Q ss_pred ecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 381 TVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 381 T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
|+|++++|+|||++..|.|+++++++.|+++|.++++
T Consensus 814 t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l~ 850 (850)
T TIGR01693 814 TFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASVA 850 (850)
T ss_pred ecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998788999999998764
No 13
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.9e-23 Score=218.69 Aligned_cols=164 Identities=25% Similarity=0.349 Sum_probs=147.9
Q ss_pred CCCCEEEEEecCCCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec-CCceEEEEEEEccCCCCCCCHHHHHHH
Q 012814 253 SFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTEGEKERV 331 (456)
Q Consensus 253 ~~~~~v~v~n~~~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l 331 (456)
...|.|.+.+.+..+.++|+|++||+|.||+.++.++...|+||.+|+|+|+ +|+++|+|+|.+++|.++. +.+...+
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~ 747 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL 747 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence 4678888889988999999999999999999999999999999999999986 8999999999999999987 5677777
Q ss_pred HHHHHHHHhh---------cC----------C----------CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 012814 332 IKCLEAAIRR---------RV----------S----------EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV 382 (456)
Q Consensus 332 ~~~L~~~l~~---------r~----------~----------~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~ 382 (456)
+..|.+++.. |. | +.|+|||.+.||||||++|+++|++++++|.+|||+|.
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 7777776631 10 1 36899999999999999999999999999999999999
Q ss_pred CceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 383 GEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 383 g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
|++++|+|||++..|.+++++..+.+.+.+.++++
T Consensus 828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~ 862 (867)
T COG2844 828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALL 862 (867)
T ss_pred cccceeEEEEeccccccCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999988888889999999877
No 14
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.90 E-value=1.8e-22 Score=226.14 Aligned_cols=183 Identities=20% Similarity=0.285 Sum_probs=157.3
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCC-ChHHHHHHHHHHHHHhcCC
Q 012814 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVG-DQTRLSLMEEQLKNILRGC 203 (456)
Q Consensus 126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~-d~~~~~~l~~~L~~~L~~~ 203 (456)
.+.+.|.|+++||||||++|+++|+.+|+||.+|+|+| .+|.+.|+|+|++ .+|.++. +++++++|+++|.++|.++
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999999999999987 6788999999999 4788754 4589999999999999986
Q ss_pred CCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEEeeCchhHHH
Q 012814 204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMF 283 (456)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~~~Dr~gll~ 283 (456)
.. . ... +.++. + .. ...+..+|.|.++|..+.++|+|.|+++||||||+
T Consensus 781 ~~----~--~~~-------~~~~~-~-----~~------------~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa 829 (895)
T PRK00275 781 DD----Y--PTI-------IQRRV-P-----RQ------------LKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLA 829 (895)
T ss_pred Cc----c--chh-------hhhhh-h-----hh------------ccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHH
Confidence 53 1 000 01110 0 00 12456678999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh
Q 012814 284 DIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR 340 (456)
Q Consensus 284 ~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~ 340 (456)
+|+++|+.+|+||..|+|.|.++++.|+|+|++.+|.++.+++.+++|+++|.++|.
T Consensus 830 ~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~ 886 (895)
T PRK00275 830 RIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLD 886 (895)
T ss_pred HHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999888899999999998874
No 15
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.90 E-value=2.2e-22 Score=224.13 Aligned_cols=161 Identities=26% Similarity=0.356 Sum_probs=139.9
Q ss_pred CCCEEEEEe-cCCCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec-CCceEEEEEEEccCCCCCCCHHHHHHH
Q 012814 254 FKPEITVER-LEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTEGEKERV 331 (456)
Q Consensus 254 ~~~~v~v~n-~~~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l 331 (456)
..|.|.+.. .++.+.++|+|+++||||||++||++|+.+|+||.+|+|+|+ +|+++|+|+|.+++|.. ...+++|
T Consensus 675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~~i 751 (869)
T PRK04374 675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQRL 751 (869)
T ss_pred CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHHHH
Confidence 356665544 677899999999999999999999999999999999999985 89999999999998874 2557778
Q ss_pred HHHHHHHHhh---------c-C--------------------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEee
Q 012814 332 IKCLEAAIRR---------R-V--------------------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVST 381 (456)
Q Consensus 332 ~~~L~~~l~~---------r-~--------------------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T 381 (456)
++.|.+++.. + . ...|.|+|.+.|||||||+|+.+|+++|++|..|+|+|
T Consensus 752 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T 831 (869)
T PRK04374 752 AAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIAT 831 (869)
T ss_pred HHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEe
Confidence 8888877631 1 0 12589999999999999999999999999999999999
Q ss_pred cCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 382 VGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 382 ~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
.|++++|+|||+|.+|.+++++++++|+++|.+++-
T Consensus 832 ~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 832 FGERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred cCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 999999999999999999877656999999998863
No 16
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.89 E-value=1.5e-21 Score=220.59 Aligned_cols=189 Identities=21% Similarity=0.377 Sum_probs=161.2
Q ss_pred ccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 122 VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 122 ~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
+.++.+.+.|+|+++||||||++|+++|+.+|+||.+|+|+| .++.+.|+|+|++ ..|.++.+++++++|++.|..++
T Consensus 726 ~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~l 804 (931)
T PRK05092 726 PDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDAL 804 (931)
T ss_pred ecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHH
Confidence 355568999999999999999999999999999999999998 7888999999999 47888777889999999999999
Q ss_pred cCCCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEEeeCchh
Q 012814 201 RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAK 280 (456)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~~~Dr~g 280 (456)
.++.. . +..+........ + ...+..+|.|.++|..+.++++|.|.++||||
T Consensus 805 ~~~~~----~-------------~~~~~~r~~~~~---~---------~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpG 855 (931)
T PRK05092 805 SGEVR----L-------------PEALAKRTKPKK---R---------ARAFHVPPRVTIDNEASNRFTVIEVNGRDRPG 855 (931)
T ss_pred cCCCC----C-------------ccccccccCccc---c---------ccCCCCCCEEEEeeCCCCCeEEEEEEECCcCc
Confidence 87643 1 101110000000 0 12556789999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh
Q 012814 281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR 340 (456)
Q Consensus 281 ll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~ 340 (456)
||++|+++|+++|+||..|+|.|.++.+.|+|+|++.+|.++.+++.++.|+++|.+.+.
T Consensus 856 Ll~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 856 LLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred HHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999888889999999998884
No 17
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.88 E-value=2.6e-21 Score=214.13 Aligned_cols=178 Identities=21% Similarity=0.236 Sum_probs=146.8
Q ss_pred cCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814 123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (456)
Q Consensus 123 ~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~ 202 (456)
.+ .+.+.|.|+|+||||||++|+++|+.+|+||.+|+|+|.+|.+.|+|+|+++ .|.+. .++++++.|.++|.+
T Consensus 595 ~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 595 AD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLRQDLRRALDG 668 (774)
T ss_pred CC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHHHHHHHHHcC
Confidence 45 6899999999999999999999999999999999999999999999999994 66553 258999999999998
Q ss_pred CCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEEeeCchhHH
Q 012814 203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLM 282 (456)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~~~Dr~gll 282 (456)
+.. . ..++.+.... .... ....+..++.|.++|..+.++++|+|.++||||||
T Consensus 669 ~~~----~-------------~~~~~~~~~~--~~~~--------~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLl 721 (774)
T PRK03381 669 DLD----V-------------LARLAAREAA--AAAV--------PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLL 721 (774)
T ss_pred CCc----h-------------hhhhhccccc--cccc--------ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHH
Confidence 543 0 1111110000 0000 01255677899999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHH
Q 012814 283 FDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCL 335 (456)
Q Consensus 283 ~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L 335 (456)
++|+++|+++|+||..|+|.|.+++++|+|+|++.+|.+++++ ++.|+++|
T Consensus 722 a~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 722 ARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAV 772 (774)
T ss_pred HHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence 9999999999999999999999999999999999999998765 67777665
No 18
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.88 E-value=4.3e-21 Score=214.29 Aligned_cols=181 Identities=19% Similarity=0.232 Sum_probs=151.0
Q ss_pred cCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814 123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (456)
Q Consensus 123 ~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~ 201 (456)
.+..+.+.|.|+++||||||++|+++|+.+|+||.+|+|+| .+|.+.|+|+|.++ .|. ..+++++++|++.|.++|.
T Consensus 673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~~~l~ 750 (856)
T PRK03059 673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELAERLA 750 (856)
T ss_pred cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHHHHHc
Confidence 45668899999999999999999999999999999999987 78889999999995 455 4457899999999999999
Q ss_pred CCCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEEeeCchhH
Q 012814 202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKL 281 (456)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~~~Dr~gl 281 (456)
++.. . +..+... ... + ...+..+|.|.+++..+.++|+|.|.++|||||
T Consensus 751 ~~~~----~-------------~~~~~~~--~~~---~---------~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGL 799 (856)
T PRK03059 751 EQAP----L-------------PEPSKGR--LSR---Q---------VKHFPITPRVDLRPDERGQYYILSVSANDRPGL 799 (856)
T ss_pred CCCC----c-------------chhhccc--ccc---c---------ccCCCCCceEEEEEcCCCCEEEEEEEeCCcchH
Confidence 8643 1 1111110 000 0 125667789999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH
Q 012814 282 MFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI 339 (456)
Q Consensus 282 l~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l 339 (456)
|++|+++|+.+|+||..|+|+|.+|++.|+|+|.+ .++.+++.+++|++.|.+++
T Consensus 800 La~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~---~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 800 LYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG---SGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred HHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC---CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999953 33557788999999998765
No 19
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.79 E-value=9.9e-19 Score=136.61 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=66.9
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCCh-HHHHHHHHHHHHhh
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDM-KTIEALRKEIGHTM 416 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~-~~~~~L~~~l~~~~ 416 (456)
.|+|||.++|||||||+|+++|.++|++|.+|+|+|+|++++|+|||++.+|.|+++ ++++.|+++|.+++
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al 72 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAI 72 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999999975 57789999999875
No 20
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.78 E-value=9.1e-19 Score=135.85 Aligned_cols=69 Identities=26% Similarity=0.381 Sum_probs=64.5
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCC-hHHHHHHHHHHHH
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVD-MKTIEALRKEIGH 414 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~-~~~~~~L~~~l~~ 414 (456)
.|+|||.+.|||||||+|+++|+++|++|++|+|+|+|++++|+|||+|.+|.|++ ++.++.|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 37899999999999999999999999999999999999999999999999999997 4678899998864
No 21
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.74 E-value=9.7e-18 Score=131.03 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=65.6
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEe--ecCceeeeEEEEEeCCCCCCCh-HHHHHHHHHHHHhhh
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVS--TVGEQAVNVFYVRDASGNPVDM-KTIEALRKEIGHTML 417 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~--T~g~~~~d~F~v~d~~g~~l~~-~~~~~L~~~l~~~~~ 417 (456)
|+|||.+.|||||||+|+++|+++|++|++|||+ |+|++++|+||| +.+|.++++ ++++.|+++|.+++.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999 999999999999 888989864 678999999999875
No 22
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.74 E-value=1.5e-17 Score=129.96 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=70.9
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~ 202 (456)
+|+|+|.|+|||||||+|+++|+++|++|..|+|.|.|+++.|+|||++ .+|.|+.++++.++|+++|.++|..
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999 6999999999999999999998864
No 23
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.71 E-value=8.1e-17 Score=124.94 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=65.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++ ..|.|+.|+++++.|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999 58999999999899988764
No 24
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.69 E-value=3.4e-16 Score=144.71 Aligned_cols=143 Identities=10% Similarity=0.119 Sum_probs=112.2
Q ss_pred CCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh----
Q 012814 265 DKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR---- 340 (456)
Q Consensus 265 ~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~---- 340 (456)
...+++|++.|+||||++++++++|+++||||.++++...+|.|.-++.|. |. +...+.|+..|...-.
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~----~~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GS----WNAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CC----hhHHHHHHHHHHhhhhhcCe
Confidence 346789999999999999999999999999999999999999988777773 22 2467777777764321
Q ss_pred ----hcC--------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCc--eeeeEEEEEeCCCCCCChHHHH
Q 012814 341 ----RRV--------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGE--QAVNVFYVRDASGNPVDMKTIE 406 (456)
Q Consensus 341 ----~r~--------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~--~~~d~F~v~d~~g~~l~~~~~~ 406 (456)
++. +.++.++|.|.||||++++||++|+++|+||...+..|+++ ...+.|.+.-.-.-|.+ ..+.
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-~~~~ 156 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-QDAA 156 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-CCHH
Confidence 121 12489999999999999999999999999999999999996 57778888665555543 2345
Q ss_pred HHHHHHHHh
Q 012814 407 ALRKEIGHT 415 (456)
Q Consensus 407 ~L~~~l~~~ 415 (456)
.|+++|.+.
T Consensus 157 ~L~~~l~~l 165 (190)
T PRK11589 157 NIEQAFKAL 165 (190)
T ss_pred HHHHHHHHH
Confidence 555555543
No 25
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.67 E-value=5e-16 Score=121.39 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=67.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEe--cCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW--THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~--T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~ 201 (456)
|+|+|.+.|||||||+|+++|+++|++|++|+|. |.|+++.|+||| + ..|.++.|+++++.|+++|.++|.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999 999999999999 6 468899999999999999998875
No 26
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.61 E-value=5.2e-15 Score=136.81 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=111.4
Q ss_pred CCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCC---CC
Q 012814 32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG---HI 108 (456)
Q Consensus 32 ~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l---~~ 108 (456)
+..+++|++.|+||||+++.++++|+++||||.++++...+|.|.-++.|. +.+ .....|+.+|.... .+
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~----~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSW----NAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CCh----hHHHHHHHHHHhhhhhcCe
Confidence 457899999999999999999999999999999999999999988788884 332 35677888776532 11
Q ss_pred CCCc-ccCCcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCc--eeEEEEEEEeCCCCCcCCC
Q 012814 109 TAGA-KTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--RIACVLYVNDDTTCRAVGD 185 (456)
Q Consensus 109 ~~~~-~~~~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~--~~~d~F~v~~~~~g~~l~d 185 (456)
.... +..... ....+..+.++|.|.|||||+++|+++|+++|+||.+.+..|.+. ...++|...- .-.-|.
T Consensus 78 ~i~v~~~~~~~---~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~-~v~lP~-- 151 (190)
T PRK11589 78 LIVMKRTTARP---RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQI-TAHSPA-- 151 (190)
T ss_pred EEEEEeccccc---cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEE-EEEcCC--
Confidence 1111 111100 011123689999999999999999999999999999999998764 3444444433 111121
Q ss_pred hHHHHHHHHHHHHHhc
Q 012814 186 QTRLSLMEEQLKNILR 201 (456)
Q Consensus 186 ~~~~~~l~~~L~~~L~ 201 (456)
....+.|+.+|.+...
T Consensus 152 ~~~~~~L~~~l~~l~~ 167 (190)
T PRK11589 152 SQDAANIEQAFKALCT 167 (190)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 1235778888875444
No 27
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=8.3e-15 Score=115.29 Aligned_cols=73 Identities=58% Similarity=0.957 Sum_probs=68.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCC-CCcCCChHHHHHHHHHHHHHhcC
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTT-CRAVGDQTRLSLMEEQLKNILRG 202 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~-g~~l~d~~~~~~l~~~L~~~L~~ 202 (456)
|+|+|.++||||||++|+++|+.+||||++|+++|.++.+.|+|+|+++ . +.++.++++++++++.|.++|.|
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999999999994 5 77788889999999999998864
No 28
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.52 E-value=9.9e-14 Score=108.84 Aligned_cols=71 Identities=28% Similarity=0.482 Sum_probs=65.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
+.|+|.++||||||++|+++|+.+|+||.+|+|+|. ++++.|+|+|++ ..+.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence 678999999999999999999999999999999997 699999999999 47888877889999999998764
No 29
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.51 E-value=9.2e-14 Score=109.00 Aligned_cols=69 Identities=29% Similarity=0.483 Sum_probs=63.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEe-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 012814 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (456)
Q Consensus 36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~ 104 (456)
++|.|+++||||||++++++|+.+|+||++|+|+|. +|+++|+|+|++++|.++.+++.+++|++.|..
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999985 799999999999988887777788888888864
No 30
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.50 E-value=1.7e-13 Score=107.88 Aligned_cols=70 Identities=31% Similarity=0.479 Sum_probs=64.5
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCC-CCCCCh-HHHHHHHHHHHHhh
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDAS-GNPVDM-KTIEALRKEIGHTM 416 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~-g~~l~~-~~~~~L~~~l~~~~ 416 (456)
|+|||.++|||||+++|+++|+++|+||..|+|.|.|+.+.|+|||+|.. |.|+.+ +++++++++|.+++
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999988 888764 67789999998774
No 31
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.50 E-value=2e-13 Score=107.89 Aligned_cols=71 Identities=23% Similarity=0.389 Sum_probs=64.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~ 202 (456)
+++|.++||||||++|+++|+.+|+||.+|+|.| .++++.|+|+|+++ .+. ..+++++++++++|.++|..
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 89999999999995 555 55678999999999999875
No 32
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.49 E-value=1.1e-13 Score=122.71 Aligned_cols=141 Identities=17% Similarity=0.204 Sum_probs=112.9
Q ss_pred CCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh-----
Q 012814 266 KGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR----- 340 (456)
Q Consensus 266 ~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~----- 340 (456)
..+++|+++|+||||++..+++...++||||.++|+...++.+.-+..+ .|. ++...+|+.+|...=.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li---sgs----~dav~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI---SGS----WDAVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE---eeC----HHHHHHHHHHhhcccccCCeE
Confidence 4678999999999999999999999999999999999999888755555 343 3678888888754211
Q ss_pred ---hcC--------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce--eeeEEEEEeCCCCCCChHHHHH
Q 012814 341 ---RRV--------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ--AVNVFYVRDASGNPVDMKTIEA 407 (456)
Q Consensus 341 ---~r~--------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~--~~d~F~v~d~~g~~l~~~~~~~ 407 (456)
.|. +..+.++|.+.|||||+.++|++|.++|++|++....|+... ....|.+.-.-+-|.+ ..+..
T Consensus 76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~~ 154 (176)
T COG2716 76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSISA 154 (176)
T ss_pred EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHHH
Confidence 121 236899999999999999999999999999999999998654 5668998666677766 34566
Q ss_pred HHHHHHH
Q 012814 408 LRKEIGH 414 (456)
Q Consensus 408 L~~~l~~ 414 (456)
|+++|.+
T Consensus 155 l~~~f~a 161 (176)
T COG2716 155 LRDAFEA 161 (176)
T ss_pred HHHHHHH
Confidence 6666655
No 33
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.49 E-value=2.6e-13 Score=107.30 Aligned_cols=69 Identities=30% Similarity=0.404 Sum_probs=61.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEee-cCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVST-VGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM 416 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T-~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~ 416 (456)
++||.+.||||||++|+.+|+++|++|.+|+|.| .++++.|+|||+|..|...+++++++++++|.+++
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVL 71 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999997 89999999999999777444567788999988775
No 34
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.42 E-value=1.1e-12 Score=100.49 Aligned_cols=52 Identities=29% Similarity=0.401 Sum_probs=49.3
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCC
Q 012814 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGK 87 (456)
Q Consensus 36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~ 87 (456)
.+|+|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|++.+|.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~ 54 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG 54 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc
Confidence 58999999999999999999999999999999997 79999999999998776
No 35
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.40 E-value=1.3e-12 Score=115.83 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=120.0
Q ss_pred CCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCC---C
Q 012814 32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH---I 108 (456)
Q Consensus 32 ~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~---~ 108 (456)
++.+++|+++++||||+...++++..++||||+++++...++.+.-+..+. |.| +....|++.|...-. +
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs~----dav~~le~~l~~l~~~~~L 74 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GSW----DAVTLLEATLPLLGAELDL 74 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eCH----HHHHHHHHHhhcccccCCe
Confidence 356799999999999999999999999999999999999999888666664 443 577888988876422 1
Q ss_pred CC-CcccCCcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEeCCCCCcCCC
Q 012814 109 TA-GAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGD 185 (456)
Q Consensus 109 ~~-~~~~~~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~~~~g~~l~d 185 (456)
.. ..+..+.. ....+..+.++|.+.|||||+.++++.|..+|+||++....| -.+.-..+|...- .-+-|..
T Consensus 75 ~v~m~rt~~~~---~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa~- 149 (176)
T COG2716 75 LVVMKRTGAHP---TPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPAN- 149 (176)
T ss_pred EEEEeecCCCc---cCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCCc-
Confidence 10 01111111 134567899999999999999999999999999999999888 3344666788766 3455542
Q ss_pred hHHHHHHHHHHHHHhcCCC
Q 012814 186 QTRLSLMEEQLKNILRGCD 204 (456)
Q Consensus 186 ~~~~~~l~~~L~~~L~~~~ 204 (456)
-....|+++|++ |++.+
T Consensus 150 -~~i~~l~~~f~a-l~~~L 166 (176)
T COG2716 150 -LSISALRDAFEA-LCDEL 166 (176)
T ss_pred -CcHHHHHHHHHH-HHHhh
Confidence 456888998874 44433
No 36
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.32 E-value=2.1e-11 Score=132.75 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=120.3
Q ss_pred EEEEEEe-cCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 012814 36 TVVKVDS-VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114 (456)
Q Consensus 36 ~~V~V~~-~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~~~ 114 (456)
-.++|.. +|++|++.+++++|+.+|++|++|++.+ +|.++..|.|.+..|.+.++....+.++.++.+.+.... +
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 622 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPA---P 622 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCccc---C
Confidence 4677777 9999999999999999999999999999 888889999999999988887788888888888654321 2
Q ss_pred CCcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHH
Q 012814 115 WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEE 194 (456)
Q Consensus 115 ~~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~ 194 (456)
.+...+.+ .++++|.+.||||+|+.|+++|. .|..|++.|.|..+.|.|++..+ . ...++++
T Consensus 623 ~~~~~~~~-----~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~--------~-~r~~~~~ 684 (693)
T PRK00227 623 GITATFWH-----GNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG--------F-DRATVER 684 (693)
T ss_pred CCCceEee-----CcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc--------c-cHHHHHH
Confidence 22222222 28999999999999999999999 89999999999999999999852 1 2377888
Q ss_pred HHHHHhcC
Q 012814 195 QLKNILRG 202 (456)
Q Consensus 195 ~L~~~L~~ 202 (456)
++..+|.+
T Consensus 685 ~~~~~~~~ 692 (693)
T PRK00227 685 DVTRVLAG 692 (693)
T ss_pred HHHHHHhc
Confidence 88877754
No 37
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.27 E-value=3.8e-11 Score=93.87 Aligned_cols=69 Identities=30% Similarity=0.567 Sum_probs=62.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCC
Q 012814 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (456)
Q Consensus 36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~ 105 (456)
++|+|+++|+||+|++++++|+.+|+||++|.++|.+++.+|+|+|+++++.+. +++.+++|+++|...
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~~ 70 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGPA 70 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhccc
Confidence 689999999999999999999999999999999998889999999999888876 557889999988753
No 38
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.25 E-value=5.3e-11 Score=93.06 Aligned_cols=70 Identities=70% Similarity=1.039 Sum_probs=62.9
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT 415 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~ 415 (456)
++.++|.++||||+|++|+.+|+++|+||.+|++.|.++.+.|+|+|++.++.++++++.++++++|..+
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~~~ 70 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIGPA 70 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhccc
Confidence 3679999999999999999999999999999999999889999999999988887656778888888744
No 39
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.22 E-value=7e-11 Score=90.62 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=48.9
Q ss_pred EEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec-CCceEEEEEEEccCCC
Q 012814 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGC 320 (456)
Q Consensus 269 ~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~-~g~~~d~f~V~~~~g~ 320 (456)
.+|.|+++||||||++++++|+.+|+||.+|+++|. +|+++|+|+|.+.+|.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~ 54 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG 54 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc
Confidence 478999999999999999999999999999999986 8999999999998875
No 40
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.19 E-value=2e-10 Score=88.81 Aligned_cols=69 Identities=51% Similarity=0.787 Sum_probs=63.2
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT 415 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~ 415 (456)
|.++|.+.||||+|++|+++|+++|++|.++++.|.++.+.|+|++++.+|.+.+.+..++|+++|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999889999999999999886666778899988765
No 41
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.19 E-value=1.9e-10 Score=88.87 Aligned_cols=70 Identities=36% Similarity=0.566 Sum_probs=63.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
|.+.|.++|+||+|++|+++|+++|+||.++++.|.++.+.|+|++++ ..+.+. +.+++++++++|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999998889999999999 477774 5689999999987654
No 42
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.18 E-value=1.7e-10 Score=125.69 Aligned_cols=137 Identities=14% Similarity=0.173 Sum_probs=111.4
Q ss_pred EEEEEEe-eCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh--hcC-C
Q 012814 269 SVVNVKC-RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR--RRV-S 344 (456)
Q Consensus 269 ~~v~V~~-~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~--~r~-~ 344 (456)
..++|.. +|++|++.+++++|+.++++|..|++.+ +|..+..|.|....|.+.++....+.++.++...+. ... |
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 4677777 9999999999999999999999999999 888889999999999998776666777666654332 111 1
Q ss_pred ----CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 345 ----EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 345 ----~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
.++++||++.||||+|+.|+++|. .|..|+++|.|..++|.||+.. + ....+++.++..+++
T Consensus 626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~--~-----~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP--G-----FDRATVERDVTRVLA 691 (693)
T ss_pred ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC--c-----ccHHHHHHHHHHHHh
Confidence 358999999999999999999999 8999999999999999999961 1 123556666665543
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.87 E-value=2.4e-08 Score=76.69 Aligned_cols=70 Identities=40% Similarity=0.621 Sum_probs=60.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
+.|.|.++|+||+|++|+++|+++|++|.++.+.+.++...++|++.++ .+.+ .+++++++++++|.+++
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRP-LDPERIARLEEALEDAL 70 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhhC
Confidence 3688999999999999999999999999999999977799999999985 5555 34578999999887653
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.86 E-value=3e-08 Score=76.20 Aligned_cols=68 Identities=41% Similarity=0.738 Sum_probs=60.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT 415 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~ 415 (456)
.|.|.+.|+||+|++|+.+|+++|++|.++.+.+.++...++|++.+.++.+.++++.+.|++.|..+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 58899999999999999999999999999999998889999999998887775556778888888654
No 45
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.82 E-value=3.3e-08 Score=78.07 Aligned_cols=65 Identities=23% Similarity=0.434 Sum_probs=56.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
+.+|++.|+||||+++.|+++|+++||||.+.+..+.++++..++.++.+ ++..++|+.+|.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999985 567788888887653
No 46
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.76 E-value=2.4e-08 Score=73.47 Aligned_cols=67 Identities=22% Similarity=0.394 Sum_probs=56.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCC
Q 012814 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK 105 (456)
Q Consensus 36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~ 105 (456)
++|+|.|||+.||-+++|+++.+.|++|..++++|+|.|++-+|+|...... ..-.|..|+++|.+.
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~---~~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS---IKVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC---CcccHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999964322 123677788777653
No 47
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.64 E-value=3e-07 Score=72.57 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=52.5
Q ss_pred eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH
Q 012814 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA 338 (456)
Q Consensus 268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~ 338 (456)
+.+|++.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.|.-+ +...++|+++|.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999988877777543 45778888888764
No 48
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.58 E-value=8.6e-07 Score=73.92 Aligned_cols=114 Identities=23% Similarity=0.264 Sum_probs=87.3
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccC
Q 012814 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTW 115 (456)
Q Consensus 36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~~~~ 115 (456)
-+|+|+..|+||-|+..+.+|.+.|+||..-.|.-.+.+-+-.+.|..+ +.-.++|++.- |.
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~g-----F~-- 65 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEAG-----FT-- 65 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHCC-----cE--
Confidence 4799999999999999999999999999988887777777766666533 23355665531 11
Q ss_pred CcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeEEEEEEEe
Q 012814 116 PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (456)
Q Consensus 116 ~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~d~F~v~~ 176 (456)
+ ...-++-|...|+||=|+.|+.+|.++++|+.++-.++.. ..+.-+|.+.+
T Consensus 66 --V-------r~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 66 --V-------RETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred --E-------EeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 1 1255788999999999999999999999999999998844 44554444433
No 49
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.54 E-value=2.3e-07 Score=72.98 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=54.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~ 201 (456)
+++|.|+|||||+++|+++|+++||||.+.+..+.++.+..+|.+..| .+. ..+.++++|.....
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l~~ 65 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFKAH 65 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999889988875 221 24777777775443
No 50
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.50 E-value=6.8e-07 Score=70.70 Aligned_cols=63 Identities=22% Similarity=0.416 Sum_probs=52.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
+++|++.|+|||||++.|+++|+++|+||.+.+.++.++++.-+..+..+ . ...+.|++.|..
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~------~~~~~l~~~l~~ 63 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--W------DAIAKLEAALPG 63 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--c------ccHHHHHHHHHH
Confidence 36899999999999999999999999999999999988888777777663 1 134777777765
No 51
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.41 E-value=1.5e-06 Score=68.72 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=43.7
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEe
Q 012814 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID 83 (456)
Q Consensus 36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~ 83 (456)
+.|++.||||||+++.++++|+++|+||.+++.++.++++.-.+.+..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~ 49 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG 49 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence 678999999999999999999999999999999999888876666653
No 52
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.36 E-value=3.7e-06 Score=63.58 Aligned_cols=61 Identities=25% Similarity=0.449 Sum_probs=47.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCc--eeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--RIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~--~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
|.|.|.++||||+|++|+.+|+++|+||..+.+.+.++ ....++...+ ....+.+.++|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence 57899999999999999999999999999999999665 4444444444 2445666666654
No 53
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.35 E-value=1.7e-05 Score=66.27 Aligned_cols=126 Identities=15% Similarity=0.149 Sum_probs=90.8
Q ss_pred EEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEE
Q 012814 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSL 349 (456)
Q Consensus 270 ~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r~~~~~~l 349 (456)
+|+|+..|+||-|..++..|.++|+||....+.-++++-+-.+.|..+ ++. .+.|+++- --+....++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d~A----~~~Lee~g-F~Vr~~dVl 72 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------DEA----HSVLEEAG-FTVRETDVL 72 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------HHH----HHHHHHCC-cEEEeeeEE
Confidence 689999999999999999999999999999998888887767777321 122 23333310 001224578
Q ss_pred EEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCc-eeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 350 ELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGE-QAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 350 ev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~-~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
-|...|+||-|+.|+.+|.++++|+.++..-+... ++.=.|.+ +.+++...+|.++..
T Consensus 73 aVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~----------ed~d~~~~aLed~gi 131 (142)
T COG4747 73 AVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV----------EDIDRAIKALEDAGI 131 (142)
T ss_pred EEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh----------hHHHHHHHHHHHcCC
Confidence 88899999999999999999999999988766543 34333332 234556666666655
No 54
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.34 E-value=1.9e-06 Score=67.76 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=49.5
Q ss_pred EEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 012814 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEA 337 (456)
Q Consensus 270 ~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 337 (456)
+|+|.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+..+.+. ..+.|++.|+.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~ 62 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLF 62 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHH
Confidence 378999999999999999999999999999988888877767777654442 24555565554
No 55
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.28 E-value=7.3e-06 Score=61.94 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=36.7
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ 385 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~ 385 (456)
|.|.|.++||||+|++|+++|+++|+||..+.+.+.++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~ 39 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG 39 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence 578999999999999999999999999999999998875
No 56
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.21 E-value=4e-06 Score=68.01 Aligned_cols=66 Identities=20% Similarity=0.349 Sum_probs=54.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
.++++.|+||||++++|+++|+++|+||.+.+..+.++.+.-.+.+..| +.. ...+.++++|....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~----~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESN----LDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCC----CCHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999988888878888774 211 12477888777544
No 57
>PRK07431 aspartate kinase; Provisional
Probab=98.13 E-value=0.0017 Score=70.86 Aligned_cols=262 Identities=13% Similarity=0.153 Sum_probs=148.6
Q ss_pred ecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCcccc
Q 012814 42 SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120 (456)
Q Consensus 42 ~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~~~~~~~~v 120 (456)
.++.+|+++++...|+++|+||.--.... ..+..--.|.+...+- ....+.|++ |...+.. ..
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~~---------~~- 341 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALGG---------AE- 341 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcCC---------Cc-
Confidence 47889999999999999999998665543 2222222466643110 111222221 2211110 01
Q ss_pred cccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 121 GVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 121 ~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
..-..+...|.+.|. ++||+++++..+|++.|++|.... + ....-.|.+.. ....+.-+.|+
T Consensus 342 -i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh 406 (587)
T PRK07431 342 -VLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVC 406 (587)
T ss_pred -EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHH
Confidence 112345778888886 799999999999999999996655 2 22333344433 23455556666
Q ss_pred HHhcCCCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEE-ee
Q 012814 198 NILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVK-CR 276 (456)
Q Consensus 198 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~-~~ 276 (456)
+.+.-+.. ...+.+++- .....+..-+. ...+...|++. .+
T Consensus 407 ~~f~~~~~------------------~~~~~~~~~------------------~~~~~~v~gIa--~~~~~~~i~l~~~~ 448 (587)
T PRK07431 407 EAFELEDS------------------QIEINPTAS------------------GQDEPEVRGVA--LDRNQAQLAIRNVP 448 (587)
T ss_pred HHhccCCc------------------ccccCcccc------------------CCCCCcEEEEE--ccCCEEEEEECCCC
Confidence 66644321 001111100 01111111121 12234445554 67
Q ss_pred CchhHHHHHHHHHHhCCcEEEEEEEEec-C--CceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-c---CCCceEE
Q 012814 277 DRAKLMFDIVCTLTDMQYVVFHAAISSD-G--PHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-R---VSEGLSL 349 (456)
Q Consensus 277 Dr~gll~~i~~~L~~~~l~I~~a~i~t~-~--g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-r---~~~~~~l 349 (456)
+++|+++++...|+++|++|..-..... + |..--.|.+... +-.....+.+.|...+.. . ...-..|
T Consensus 449 ~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~------~~~~~~~~l~~l~~~~~~~~i~~~~~va~V 522 (587)
T PRK07431 449 DRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKE------DREAAQKVLRELAKQLPGAEVEDGPAIAKV 522 (587)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHH------HHHHHHHHHHHHHHhcCCceEEEeCCeEEE
Confidence 8899999999999999999987755322 2 222223555321 111122222223222211 0 1234678
Q ss_pred EEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814 350 ELCAK---DRVGLLSEVTRILRENGLSVTRAG 378 (456)
Q Consensus 350 ev~~~---DrpGlL~~It~~l~~~gi~I~~a~ 378 (456)
.+.|. .+||+++++.++|.+.|++|....
T Consensus 523 SvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 523 SIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred EEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 88886 889999999999999999997665
No 58
>PRK00194 hypothetical protein; Validated
Probab=98.12 E-value=8.7e-06 Score=66.18 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=52.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
.+++++.|+||||++++|+++|+++|+||.+.+..+.++.+.-.+.+..+ +.+. ..+.+++.|..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~----~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK----DFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC----CHHHHHHHHHH
Confidence 68999999999999999999999999999999999988877776666653 2121 13677777765
No 59
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.07 E-value=1.3e-05 Score=59.27 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=59.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
++|+|.|+|+.||-.++++++.++|++|..+.+.|.|.-..-+|+|... ..++ +-+|..|+++|.++.
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~C 68 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSAC 68 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhcC
Confidence 4799999999999999999999999999999999999999999999873 2333 468999999887653
No 60
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.07 E-value=1.9e-05 Score=61.70 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=45.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
+|++.|+|||||+++|+++|+++|+||.+.+..+. ++...-.+.+..| ..+ ...+.++++|....
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~--~~~----~~~~~l~~~l~~l~ 67 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE--GFD----LSREALEAAFAPVA 67 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC--CCC----CCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999973 2322222223331 100 12577887776533
No 61
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.04 E-value=2.1e-05 Score=62.40 Aligned_cols=62 Identities=24% Similarity=0.403 Sum_probs=47.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC------ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN------RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~------~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
++++.|+|+||++++|+++|+++|+||.+.+..+.+ +.+.-.+.+..| . . ....+++.+|..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p--~-~----~~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP--A-G----TDLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC--C-C----CCHHHHHHHHHH
Confidence 478999999999999999999999999999999966 445555555553 1 1 124677777765
No 62
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.02 E-value=1.3e-05 Score=62.65 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=46.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT 415 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~ 415 (456)
+|.+.|+||||++++||++|+++|+||...+..+.. ....|++.-.-..|-.+-..++|+++|.+.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 378999999999999999999999999999988742 223577743322231111356677666654
No 63
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.01 E-value=1.6e-05 Score=64.40 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=43.7
Q ss_pred EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeC
Q 012814 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ 84 (456)
Q Consensus 36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~ 84 (456)
..|++.|+|+||++++++++|+++|+||.+.+.++.++.+.-.+.+.-+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~ 50 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS 50 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence 5789999999999999999999999999999999988877767777644
No 64
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.94 E-value=5.1e-05 Score=60.14 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=41.3
Q ss_pred EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeC------CEEEEEEEEEeC
Q 012814 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG------GWFMDVFHVIDQ 84 (456)
Q Consensus 37 ~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~------g~~~d~f~V~~~ 84 (456)
+|+|.|+|+||++++|+++|+++|+||.+.+..+.+ +.+.-.+.+.-+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p 54 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP 54 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence 478999999999999999999999999999999865 566656666654
No 65
>PRK00194 hypothetical protein; Validated
Probab=97.91 E-value=3.7e-05 Score=62.44 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=44.0
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeC
Q 012814 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ 84 (456)
Q Consensus 35 ~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~ 84 (456)
.+.|+|.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~ 52 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS 52 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence 57899999999999999999999999999999999888887766666533
No 66
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.86 E-value=2.3e-05 Score=62.80 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=55.3
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~ 201 (456)
..+|+|.|.||||+.+.|+++|+++|+||.+....-..+.+..++.|.-+ .. ......+++.|.....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~----~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KE----VVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hH----hccHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999988899999988888764 11 1234667776665544
No 67
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.77 E-value=0.0005 Score=67.82 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=42.2
Q ss_pred EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEe--CCEEEEEEEEEeC
Q 012814 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVIDQ 84 (456)
Q Consensus 37 ~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~--~g~~~d~f~V~~~ 84 (456)
.|+|.|+|+||+.+.++++|+++|+||.+.+.+.+ +|++...+.+.-+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~ 51 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE 51 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC
Confidence 58999999999999999999999999999999984 4787767777644
No 68
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.74 E-value=3.9e-05 Score=58.99 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=51.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec--Cceeee--EEEEEeCCCCCCC-hHHHHHHHHHHHHhh
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV--GEQAVN--VFYVRDASGNPVD-MKTIEALRKEIGHTM 416 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~--g~~~~d--~F~v~d~~g~~l~-~~~~~~L~~~l~~~~ 416 (456)
.||++|..||-++||||-+|+.+|+.|++|+|..+ +++.+. .|.+.+..+ .++ +....++.+.+...+
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~-~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDR-LKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCc-cccchHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999865 566555 466655533 354 344566666666553
No 69
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.71 E-value=0.00062 Score=67.43 Aligned_cols=104 Identities=6% Similarity=0.024 Sum_probs=63.3
Q ss_pred eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEe--cCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hh--
Q 012814 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS--DGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA---IR-- 340 (456)
Q Consensus 268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~---l~-- 340 (456)
..+|+|.|+||||+++.+++.|+++|+||.+.+.++ ..+.+.-.+.+.+...... ..+.|+++|.+. +.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHHHHhCCe
Confidence 457999999999999999999999999999999973 3343332333332211111 244555555543 21
Q ss_pred ---hcCCCceEEEEEeCCCcchHHHHHHHHHHCCceEE
Q 012814 341 ---RRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVT 375 (456)
Q Consensus 341 ---~r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~ 375 (456)
+...+...|-|-+-.+..-|.+|-.+...-.++.+
T Consensus 85 ~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~ 122 (289)
T PRK13010 85 WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMD 122 (289)
T ss_pred EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcE
Confidence 11123334444444555567777777766655443
No 70
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.71 E-value=0.00053 Score=67.91 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=34.4
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE
Q 012814 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS 70 (456)
Q Consensus 34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t 70 (456)
...+|+|.|+||||+.+.++++|+++|+||.+.+.++
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~ 44 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFD 44 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEeccccc
Confidence 3568999999999999999999999999999999983
No 71
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.70 E-value=0.00028 Score=55.89 Aligned_cols=64 Identities=23% Similarity=0.375 Sum_probs=49.3
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
-.+.|.|.+.||||+|++|+.++++.|+||..+.+.+. ++.+.-.|.+.-. |.+++..+-+.|+
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999994 5677777777663 4566666655543
No 72
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.67 E-value=0.00017 Score=71.34 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=53.2
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
...++++|.|+|||||++.|+++|+++|+||.+.+..+ .++.+..++.+... ..+ ...+.|+++|....
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~--~~~----~~~~~L~~~L~~l~ 74 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD--GLI----FNLETLRADFAALA 74 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC--CCC----CCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999 77765555555441 112 22678888887433
No 73
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.66 E-value=0.001 Score=65.64 Aligned_cols=101 Identities=11% Similarity=0.108 Sum_probs=67.3
Q ss_pred EEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHH----HHh---
Q 012814 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMDGCILDTEGEKERVIKCLEA----AIR--- 340 (456)
Q Consensus 270 ~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~----~l~--- 340 (456)
+|+|.||||||+++.+++.|+++|+||.+.+.+.. +|++.-.+.+..+ +... ..+.|+++|++ .+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~----~~~~l~~~l~~~~~~~~~l~i 76 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRL----EESSLLAAFKSALAEKFEMTW 76 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCC----CHHHHHHHHHHHHHHHhCCEE
Confidence 58999999999999999999999999999999985 4766655555433 2112 24455555555 221
Q ss_pred --hcCCCceEEEEEeCCCcchHHHHHHHHHHCCceEE
Q 012814 341 --RRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVT 375 (456)
Q Consensus 341 --~r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~ 375 (456)
....+...|-|-+-.+---|.+|......-.++++
T Consensus 77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~ 113 (280)
T TIGR00655 77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAE 113 (280)
T ss_pred EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcE
Confidence 00122334555555556678888888876666544
No 74
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.64 E-value=6.2e-05 Score=60.32 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=41.5
Q ss_pred eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEE
Q 012814 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR 315 (456)
Q Consensus 268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~ 315 (456)
..+|+|.|+||||+.++++++|+++|+||.+-...-.+|++.-.+.|.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~ 50 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence 357999999999999999999999999999887766788877666663
No 75
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.56 E-value=0.0019 Score=64.07 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=64.4
Q ss_pred CeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEe--cCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh---
Q 012814 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS--DGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR--- 341 (456)
Q Consensus 267 ~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--- 341 (456)
..++|+|.|+||||++++++++|+++|+||.+.+..+ .+|.+.-.+.+.. +..+ ...+.|+++|++.-..
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~----~~~~~L~~~L~~l~~~l~l 79 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLI----FNLETLRADFAALAEEFEM 79 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCC----CCHHHHHHHHHHHHHHhCC
Confidence 4578999999999999999999999999999999999 6776554444432 1111 1256666666643211
Q ss_pred -----cCCCceEEEEEeCCCcchHHHHHHHHHHCCce
Q 012814 342 -----RVSEGLSLELCAKDRVGLLSEVTRILRENGLS 373 (456)
Q Consensus 342 -----r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~ 373 (456)
...+...|-|-+-.+---|..|..+...-.++
T Consensus 80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~ 116 (286)
T PRK06027 80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELP 116 (286)
T ss_pred EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCC
Confidence 11122333344444444556666555554443
No 76
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.52 E-value=0.0022 Score=63.46 Aligned_cols=106 Identities=10% Similarity=0.090 Sum_probs=69.3
Q ss_pred eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hh--
Q 012814 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA---IR-- 340 (456)
Q Consensus 268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~---l~-- 340 (456)
.++|+|.|+||||++++++++|+++|+||.+.+..+. ++.+.-.+.+..+.+. ..+.|+++|++. +.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ 80 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence 3579999999999999999999999999999999864 4555544555433332 245566555543 21
Q ss_pred ---hcCCCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEE
Q 012814 341 ---RRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGV 379 (456)
Q Consensus 341 ---~r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i 379 (456)
+...+...|-|-+-.+.--|.++..++..-.++.+-+-+
T Consensus 81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~v 122 (286)
T PRK13011 81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGV 122 (286)
T ss_pred EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEE
Confidence 111223345555555666777888777777665444443
No 77
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.45 E-value=0.0015 Score=51.69 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=50.4
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE--eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 012814 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (456)
Q Consensus 35 ~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~ 104 (456)
.+.|.|.+.||||+|++|+.++++.|+||.+..+.+ .++.+.-.|.+.-. +.+.++.|-+.|..
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~------d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK------DLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES------SHHHHHHHHHHHCT
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC------CHHHHHHHHHHHHC
Confidence 357999999999999999999999999999999998 47888777777632 23566777777765
No 78
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.44 E-value=0.0012 Score=51.12 Aligned_cols=60 Identities=12% Similarity=0.245 Sum_probs=46.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
|.|.+.||||+|++|+.++++.|+||......+. .+.+...|.+.-. +.++++++.+.|+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHh
Confidence 6889999999999999999999999999888764 4566555666542 3466677766655
No 79
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.37 E-value=0.0022 Score=63.52 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=43.2
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE--eCCEEEEEEEEEeCCC
Q 012814 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQG 86 (456)
Q Consensus 35 ~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g 86 (456)
...|+|.|+||||++++++++|+++|+||.+.+.++ .++.+.-.+.+..+.+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~ 60 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG 60 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC
Confidence 578999999999999999999999999999999986 4456665666654444
No 80
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.36 E-value=0.00061 Score=65.28 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=41.4
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEe--CCEEEEEEEEE
Q 012814 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVI 82 (456)
Q Consensus 34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~--~g~~~d~f~V~ 82 (456)
...++++.|||+||+.+.|++.|+.+|+||.++..+++ .|+++......
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~ 56 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFE 56 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEe
Confidence 56899999999999999999999999999999999973 56666443333
No 81
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.16 E-value=0.0023 Score=58.49 Aligned_cols=66 Identities=20% Similarity=0.392 Sum_probs=48.4
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM 416 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~ 416 (456)
..+.+.+.|+||+|++|+.+|+++|+||.+..+..........+-+.-+ + ++..+++|+++|.+.+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~---~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-G---DDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-C---CHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999996643333334444322 2 2234678888887753
No 82
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.14 E-value=0.0039 Score=47.33 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=41.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-----CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-----NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-----~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
+.|.++|+||+|++|+.+|+++|+||.+...... .+.....|.+... +.++++.+.+.|.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~l~ 65 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-------GAEHIEEIIAALR 65 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence 3578899999999999999999999998886653 2334433444332 2345556655554
No 83
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.13 E-value=0.0046 Score=47.83 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=47.9
Q ss_pred EEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 012814 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (456)
Q Consensus 38 V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~ 104 (456)
|.|.++|+||+|++|+.++++.|.||.+....+ .++++...|.+.-. +.+.++.+.+.|+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~------~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP------SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC------CHHHHHHHHHHHhc
Confidence 678999999999999999999999999888876 45777666666532 23466777777765
No 84
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0013 Score=63.13 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=47.6
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
...+++++.|+|+|||++.|++.|+++||||.++.-++. ++++..--.... .+.+. ..+.++.+|..
T Consensus 5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~ 73 (287)
T COG0788 5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP 73 (287)
T ss_pred ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH
Confidence 367899999999999999999999999999999999962 333322222222 13332 24667776665
No 85
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.09 E-value=0.0032 Score=49.10 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=42.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
.|.|.+.||+|+|++|+.++++.|+||.+..+.+. +... |.+.- .+.+++..+-++|+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~v-------~~~~~L~~li~~L~ 59 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFPT-------IEFEKLQTLMPEIR 59 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeEe-------cCHHHHHHHHHHHh
Confidence 47899999999999999999999999999999876 3322 22222 13456666665554
No 86
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.04 E-value=0.0027 Score=49.51 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=32.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV 382 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~ 382 (456)
.|+|.+.||+|+|++|+.+|++.|++|.+..+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 37899999999999999999999999999998775
No 87
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.02 E-value=0.0058 Score=46.43 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=37.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEE
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVR 393 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~ 393 (456)
.+.|..+|+||.|++|+++|.++|+||.+..+...++. .+|.+.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 57889999999999999999999999999998776653 555553
No 88
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.01 E-value=0.0041 Score=47.25 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=37.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
..+.|..+|+||.|++|+..|+++|+||.+..+...++. .++.+..
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 367889999999999999999999999999998776554 4455443
No 89
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.00 E-value=0.0062 Score=48.19 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=46.1
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
+.+.+...|+||.|++|...|+++|+||.+......+.. ..=.|||. .++. ........+-+.|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd-~~~~-~~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFID-FEGH-IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEE-EECC-CCCHHHHHHHHHHHH
Confidence 457778899999999999999999999999987766543 44477774 3353 223334444444444
No 90
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.99 E-value=0.0062 Score=47.86 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=46.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
..|.+...|+||.|++|+++|+..|.||.+..+.- ......-+..+..+ ++...+.+...|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-------~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-------TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-------CHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999874 44444444333332 23455666666654
No 91
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.98 E-value=0.0046 Score=56.54 Aligned_cols=65 Identities=18% Similarity=0.346 Sum_probs=47.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~ 201 (456)
..+.+.+.|+||+|++|+++|+.+|+||.+..+.. ..+....++.+.. +....+.|+..|.+...
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLid 69 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhH
Confidence 57899999999999999999999999999999976 3333433333333 12336778877776443
No 92
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.98 E-value=0.0046 Score=48.61 Aligned_cols=65 Identities=9% Similarity=0.167 Sum_probs=47.8
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT 415 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~ 415 (456)
+.+.+...|+||+|++|+.+|+..|.||.+..+.-..+...-.+-++-. | ++..+++|..+|.+.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~---~~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-C---TENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-C---CHHHHHHHHHHHhCC
Confidence 4688999999999999999999999999999987444443333333211 2 235678888888764
No 93
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.97 E-value=0.0036 Score=49.95 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=51.4
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM 416 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~ 416 (456)
..+.+...|+||+|++|+..|++.|.||.+..+..........+-+.-..| ++..++++..+|.+.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhCCc
Confidence 358888999999999999999999999999999776666555554432213 2356788888887753
No 94
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.97 E-value=0.0059 Score=46.58 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=37.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-c-eeEEEEEEEe
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-R-RIACVLYVND 176 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~-~~~d~F~v~~ 176 (456)
+.+.+..+|+||.|+++++.|+++|+||.+....... + .....|.+..
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~ 51 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKT 51 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECC
Confidence 5688999999999999999999999999998876642 2 3334555544
No 95
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.95 E-value=0.0057 Score=46.68 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=45.7
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC-c-eeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG-E-QAVNVFYVRDASGNPVDMKTIEALRKEIGHTM 416 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g-~-~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~ 416 (456)
+.+.+..+|+||.|++|++.|+++|++|.+....... . ...-.|.++.. ...+.+.+.|.++.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~~~~~~L~~~G 66 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-------EDRERAKEILKEAG 66 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-------HHHHHHHHHHHHcC
Confidence 4578899999999999999999999999988776652 2 33335555311 24567777776654
No 96
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.94 E-value=0.0026 Score=46.58 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=39.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeEEEEEEEe
Q 012814 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (456)
Q Consensus 131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~d~F~v~~ 176 (456)
+.+...|+||.|++++..|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46789999999999999999999999999988755 66776666655
No 97
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.91 E-value=0.0081 Score=46.58 Aligned_cols=61 Identities=21% Similarity=0.356 Sum_probs=45.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEeCCCCCcCCChH-HHHHHHHHHH
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQT-RLSLMEEQLK 197 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~~~~g~~l~d~~-~~~~l~~~L~ 197 (456)
.+.+.+.|+||+|++|+..|+++|+||......+. ++.+.-.|.+... +.+ .+.++-++|+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHh
Confidence 57899999999999999999999999999987663 4555555666442 223 5566666654
No 98
>PRK07431 aspartate kinase; Provisional
Probab=96.87 E-value=0.53 Score=51.49 Aligned_cols=221 Identities=12% Similarity=0.127 Sum_probs=126.6
Q ss_pred CCeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 012814 33 PECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT 109 (456)
Q Consensus 33 ~~~~~V~V~~~---DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~ 109 (456)
.+...|+|.+. +.+|+.+++..+|.+.|++|.... ..+..+ .|.|...+ .++..+.|++.+.......
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~---sSe~~I-s~vv~~~d-----~~~av~~Lh~~f~~~~~~~ 416 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS---TSEVKV-SCVIDAED-----GDKALRAVCEAFELEDSQI 416 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---cCCCEE-EEEEcHHH-----HHHHHHHHHHHhccCCccc
Confidence 35778888886 799999999999999999996444 334333 24443211 1346777777774432211
Q ss_pred C--Ccc-cCCccccc-ccCCCceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEec-CCc--eeEEEEEEEeCCCCC
Q 012814 110 A--GAK-TWPSKQVG-VHSVGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWT-HNR--RIACVLYVNDDTTCR 181 (456)
Q Consensus 110 ~--~~~-~~~~~~v~-~~~~~~~t~i~v~-~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~--~~~d~F~v~~~~~g~ 181 (456)
. ..+ ......+. .....+...|++. ..+.||++++|...|+++|++|....... .++ ...-.|.+..
T Consensus 417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----- 491 (587)
T PRK07431 417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----- 491 (587)
T ss_pred ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence 1 010 01111111 1233445566654 46889999999999999999999886643 222 2333344433
Q ss_pred cCCChHHHHHHHHHHHHHhcCCCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEE
Q 012814 182 AVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVE 261 (456)
Q Consensus 182 ~l~d~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 261 (456)
....++...+.+ |..+.. .-.+.+
T Consensus 492 -----~~~~~~~~~l~~-l~~~~~-------------------------------------------------~~~i~~- 515 (587)
T PRK07431 492 -----EDREAAQKVLRE-LAKQLP-------------------------------------------------GAEVED- 515 (587)
T ss_pred -----HHHHHHHHHHHH-HHHhcC-------------------------------------------------CceEEE-
Confidence 122222222221 221110 001111
Q ss_pred ecCCCCeEEEEEEee---CchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH
Q 012814 262 RLEDKGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA 338 (456)
Q Consensus 262 n~~~~~~~~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~ 338 (456)
.++...|.|.|. .+||++.++..+|.+.|+||.... ..+.-+ .|.|. +...++..++|.+.
T Consensus 516 ---~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~---~S~~~I-s~vV~---------~~~~~~av~~Lh~~ 579 (587)
T PRK07431 516 ---GPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA---TSEIRT-SCVVA---------EDDGVKALQAVHQA 579 (587)
T ss_pred ---eCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee---ccceEE-EEEEe---------HHHHHHHHHHHHHH
Confidence 124456888875 889999999999999999995443 222222 24452 34455566666655
Q ss_pred H
Q 012814 339 I 339 (456)
Q Consensus 339 l 339 (456)
+
T Consensus 580 f 580 (587)
T PRK07431 580 F 580 (587)
T ss_pred h
Confidence 4
No 99
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.85 E-value=0.0093 Score=45.06 Aligned_cols=62 Identities=16% Similarity=0.364 Sum_probs=44.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec-CceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV-GEQAVNVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~-g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
.+.+.+.|+||+|.+|+++|+++|++|.+....+. ++.....++..+. + + ..++++.++|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG---D-D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC---C-H-HHHHHHHHHHhC
Confidence 47789999999999999999999999999998775 3333333333332 1 2 456666666654
No 100
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.80 E-value=0.0073 Score=45.80 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=43.2
Q ss_pred EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCc---eeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGE---QAVNVFYVRDASGNPVDMKTIEALRKEIGHTM 416 (456)
Q Consensus 349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~---~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~ 416 (456)
+.|..+|+||+|++|+++|+++|++|.+........ ...-.++++-. . + +..+++.+.+.|.+..
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~-~-~-~~~~l~~l~~~l~~~g 68 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLE-T-R-GAEHIEEIIAALREAG 68 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEE-e-C-CHHHHHHHHHHHHHcC
Confidence 357889999999999999999999999887655421 12222333211 1 1 2355677777776654
No 101
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.80 E-value=0.0042 Score=45.42 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=37.4
Q ss_pred EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEE
Q 012814 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG-EQAVNVFYVR 393 (456)
Q Consensus 349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g-~~~~d~F~v~ 393 (456)
+++...|+||.|.+|+..|.++|+||.+..+...+ +.+.-.|-+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 35788999999999999999999999999987765 5566566553
No 102
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.75 E-value=0.011 Score=45.47 Aligned_cols=63 Identities=27% Similarity=0.367 Sum_probs=43.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCc-eeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGE-QAVNVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~-~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
.+.+.+.|+||+|.+|+++|+++|++|......+..+ ......++++. .+..+++++.+.|.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE----TSEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc----CCHHHHHHHHHHHHc
Confidence 5789999999999999999999999999998765432 22223333322 233556666666664
No 103
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.74 E-value=0.01 Score=48.64 Aligned_cols=65 Identities=25% Similarity=0.423 Sum_probs=46.7
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
....+|++...|+||+|++|++.|+..|.||.+..+.- ......-+..+... ...++++...|.+
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~--------~~~i~Qi~kQL~K 71 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND--------DQRLEQMISQIEK 71 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC--------chHHHHHHHHHhC
Confidence 34577999999999999999999999999999998865 33333333333321 2456777766654
No 104
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.72 E-value=0.011 Score=47.28 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=46.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEE-EEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACV-LYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~-F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
.+|.+...|+||.|++|++.|+..|.||.+..+.. ......-+ +.+..+ |+..++++...|.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~-------d~~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ-------DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC-------CHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999876 33333333 333312 34556777766654
No 105
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.72 E-value=0.0085 Score=49.05 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=52.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM 416 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~ 416 (456)
...|.+...|+||+|++|+-.|+..|.||++..+.-.+....-.+.+.-. + +..++++..+|.+.+
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~----~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D----DQRLEQMISQIEKLE 73 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C----chHHHHHHHHHhCCc
Confidence 46799999999999999999999999999999987766665444444322 2 357888888888764
No 106
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.72 E-value=0.0097 Score=53.56 Aligned_cols=66 Identities=18% Similarity=0.347 Sum_probs=50.1
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM 416 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~ 416 (456)
..+.|...|+||.|++|+..|+++|+||.+.-+...++...-.+.++- ++ ++..+++|..+|.+.+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~---d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG---DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhcCc
Confidence 468899999999999999999999999999988776544333333321 12 2467889999998863
No 107
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.69 E-value=0.016 Score=43.79 Aligned_cols=60 Identities=23% Similarity=0.407 Sum_probs=43.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-Cce-eEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRR-IACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~-~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
.+.+.+.|+||+|.+|+..|+++|++|......+. ++. +.-.|.+..+ + ...+.+...|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD-------D-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC-------H-HHHHHHHHHHh
Confidence 46788999999999999999999999999998875 333 4333333331 2 34555555554
No 108
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.62 E-value=0.015 Score=44.77 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=31.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~ 164 (456)
.|.+.+.|+||++.+|+.+|+++|+||......+.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 57889999999999999999999999999987664
No 109
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.61 E-value=0.01 Score=44.35 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=31.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG 383 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g 383 (456)
++.+.-+|+||-|++++.+|+++|+||.+......+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367889999999999999999999999988765544
No 110
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.57 E-value=0.016 Score=43.55 Aligned_cols=44 Identities=30% Similarity=0.374 Sum_probs=36.6
Q ss_pred EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEE
Q 012814 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG--EQAVNVFYV 392 (456)
Q Consensus 349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g--~~~~d~F~v 392 (456)
+.+.+.|+||+|++|+++|+++|++|.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67889999999999999999999999999987765 344445555
No 111
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.48 E-value=0.018 Score=45.32 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=46.4
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eee-EEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVN-VFYVRDASGNPVDMKTIEALRKEIGHT 415 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d-~F~v~d~~g~~l~~~~~~~L~~~l~~~ 415 (456)
+.+.+...|+||+|.+|+..|+..|.||.+..+....+. ... ++-+ . ++..+++|.++|.+.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~------~~~~i~ql~kQL~KL 67 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A------SERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C------CCchHHHHHHHHhcC
Confidence 568999999999999999999999999999998764333 222 3333 2 134567777777664
No 112
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.46 E-value=0.026 Score=43.68 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=44.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG-EQAVNVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g-~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
.+.+.+.||||+|++|++.|+++|++|......+.. +.+.=.|-+.-. + . +.++++|.++|.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-~-~--~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-T-M--NGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-c-h--HHHHHHHHHHHhc
Confidence 478999999999999999999999999998775533 334444555221 1 1 1256666666654
No 113
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.44 E-value=0.022 Score=51.26 Aligned_cols=64 Identities=19% Similarity=0.360 Sum_probs=47.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC--ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~--~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
.++++...|+||.|++|++.|+.+|+||.+..+...+ +...-+|.+.. +....+.+...|.+..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCc
Confidence 4789999999999999999999999999999887644 33444444433 2355677777766543
No 114
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.42 E-value=0.024 Score=42.85 Aligned_cols=46 Identities=20% Similarity=0.435 Sum_probs=36.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeEEEEEEE
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVN 175 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~d~F~v~ 175 (456)
.+.+.++|+||.|++|+..|+++++||.+....+.. +.+.-+|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 578899999999999999999999999998887753 4444334343
No 115
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.40 E-value=0.02 Score=51.69 Aligned_cols=66 Identities=20% Similarity=0.395 Sum_probs=48.8
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM 416 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~ 416 (456)
..+.|...|+||.|++|+..|+++|+||.+..+....+...-.+.++- ++ ++..++++..+|.+.+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V-~~---~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT-SG---DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhccc
Confidence 468899999999999999999999999999987665533333232321 12 2467888988888763
No 116
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.36 E-value=0.011 Score=44.40 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=37.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC--ceeEEEEEE
Q 012814 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYV 174 (456)
Q Consensus 131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~--~~~~d~F~v 174 (456)
+.+.+.|+||++++|+.+|+++|+||.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67889999999999999999999999999998854 555556666
No 117
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.33 E-value=0.031 Score=50.51 Aligned_cols=64 Identities=14% Similarity=0.357 Sum_probs=47.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC--ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~--~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
.+++|...|+||.|++|++.|+.+|+||.+..+.... +...-+|.+.. |...++++...|.+..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhccc
Confidence 4789999999999999999999999999999877543 34444454543 2455677777666533
No 118
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.27 E-value=0.029 Score=42.26 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=30.4
Q ss_pred EEEEeCCCcchHHHHHHHHHHCCceEEEEEEee
Q 012814 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVST 381 (456)
Q Consensus 349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T 381 (456)
+.+.+.|+||.|.+|++.|+++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 578899999999999999999999999988765
No 119
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.26 E-value=0.029 Score=44.15 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=45.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
...+++...|+||.|++|+++|...|.||.+..+.. .++...-++.+.+ . ..++.|...|.+
T Consensus 3 ~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---~------~~i~ql~kQL~K 66 (76)
T PRK11152 3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---E------RPIDLLSSQLNK 66 (76)
T ss_pred eEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---C------chHHHHHHHHhc
Confidence 357899999999999999999999999999999876 3343444444532 2 334666666554
No 120
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.20 E-value=0.0081 Score=46.44 Aligned_cols=68 Identities=16% Similarity=0.357 Sum_probs=48.4
Q ss_pred EEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEccC-CCCCCCHHHHHHHHHHHHHH
Q 012814 271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMD-GCILDTEGEKERVIKCLEAA 338 (456)
Q Consensus 271 v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~~-g~~~~~~~~~~~l~~~L~~~ 338 (456)
|.+.|+.||-.|||++-+|+.+++.|+.|+|... ++.-..+|.+...+ +..+......+++.+.+...
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~ 73 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKT 73 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999753 55544444443322 32344445567777665543
No 121
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.16 E-value=0.061 Score=42.40 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=39.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEe
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVND 176 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~ 176 (456)
+.+.+..+|+||.|++|...|+++|+||.+...... .+...-.|+|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 457778899999999999999999999999987664 345666788866
No 122
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.13 E-value=0.05 Score=39.90 Aligned_cols=46 Identities=28% Similarity=0.437 Sum_probs=36.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeEEEEEEEe
Q 012814 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND 176 (456)
Q Consensus 131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~d~F~v~~ 176 (456)
|.+.+.|+||++.+|+..|.+++++|.+..+...+ +.....|.+..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV 47 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence 46789999999999999999999999999987765 33444444544
No 123
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.13 E-value=0.029 Score=42.93 Aligned_cols=44 Identities=32% Similarity=0.476 Sum_probs=33.9
Q ss_pred EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEE
Q 012814 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV--GEQAVNVFYV 392 (456)
Q Consensus 349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~--g~~~~d~F~v 392 (456)
+-+...|+||.+++|++.|+++|+||.+...... ++.+.=+|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 3467899999999999999999999998887553 3444434444
No 124
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.12 E-value=0.019 Score=42.91 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=31.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN 165 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~ 165 (456)
++.+..+|+||-|++++..|+++|+||.+...+...
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367889999999999999999999999988876543
No 125
>PRK08577 hypothetical protein; Provisional
Probab=96.09 E-value=0.059 Score=47.30 Aligned_cols=53 Identities=30% Similarity=0.449 Sum_probs=42.2
Q ss_pred CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEEe
Q 012814 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND 176 (456)
Q Consensus 124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~~ 176 (456)
+....+.+.+.+.|+||+|++|+++|+++|+||.+....+. ++.+...|.+.-
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev 106 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDL 106 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEe
Confidence 44568999999999999999999999999999999988774 343444444443
No 126
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.05 E-value=0.039 Score=43.04 Aligned_cols=48 Identities=23% Similarity=0.377 Sum_probs=38.4
Q ss_pred EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCC
Q 012814 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASG 397 (456)
Q Consensus 349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g 397 (456)
|-+...|+||-|++|-..|+.+|||+.+.+....... .+=.||| |-+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence 4555689999999999999999999999987776555 3447777 5556
No 127
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.02 E-value=0.05 Score=41.09 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=32.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG 383 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g 383 (456)
.+.+.+.|+||.|++|++.|++++++|.+....+..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 478899999999999999999999999988876653
No 128
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.00 E-value=0.043 Score=41.24 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=36.0
Q ss_pred EEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-e-CCEEEEEEEEE
Q 012814 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHVI 82 (456)
Q Consensus 38 V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~-~g~~~d~f~V~ 82 (456)
+.+.++|+||.+++++..|+++|++|....... . ++...-.+.+.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~ 48 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD 48 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC
Confidence 578999999999999999999999999888775 2 45554344443
No 129
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.95 E-value=0.054 Score=41.72 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=30.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC
Q 012814 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH 164 (456)
Q Consensus 131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~ 164 (456)
+.+..+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5788999999999999999999999998876653
No 130
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.91 E-value=0.063 Score=41.04 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=31.6
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV 382 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~ 382 (456)
+.+.+..+|+||.|.+|+++|+++|+||.+....-.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~ 37 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS 37 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence 468889999999999999999999999998865443
No 131
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.88 E-value=0.048 Score=42.03 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=30.5
Q ss_pred EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 012814 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV 382 (456)
Q Consensus 349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~ 382 (456)
+.+.-+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6778899999999999999999999998876654
No 132
>PRK08577 hypothetical protein; Provisional
Probab=95.88 E-value=0.066 Score=46.97 Aligned_cols=65 Identities=29% Similarity=0.432 Sum_probs=45.9
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG--EQAVNVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g--~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
.+.+.+.+.|+||+|++|+++|++++++|.+....+.. +.+.-.|.+ +..+. +.++.++.++|..
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~v-ev~~~---~~~l~~l~~~L~~ 122 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIV-DLSKS---DIDLEELEEELKK 122 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEE-EeCCc---hhhHHHHHHHHHc
Confidence 57799999999999999999999999999999877654 223333333 22121 1345666666654
No 133
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.87 E-value=0.062 Score=43.73 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=47.0
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceee-eEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAV-NVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~-d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
+.|-+...|+||-|+++-..|+++|||+.+.+......+-+ =.||| |.+|. .+ ..++++-+.|.+
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~-~~-~~~~~~l~~L~~ 80 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK-SA-PALDPIIKSLRN 80 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC-CC-HHHHHHHHHHHH
Confidence 56777779999999999999999999999999877655544 47888 55565 22 333444444444
No 134
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.83 E-value=0.082 Score=41.03 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=44.3
Q ss_pred EEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCc-eeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 350 ELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGE-QAVNVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 350 ev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~-~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
-+...|+||-|++|...|+++|+||.+........ ...=.|||. .+|.. .+...+.+.+.|.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~~-~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGHI-DDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECCC-CCHHHHHHHHHHHH
Confidence 44557999999999999999999999997665544 455678884 44532 22444555555554
No 135
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.80 E-value=0.062 Score=37.31 Aligned_cols=35 Identities=37% Similarity=0.595 Sum_probs=31.5
Q ss_pred EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 012814 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG 383 (456)
Q Consensus 349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g 383 (456)
|.+.+.|+||++++|+.+|+++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788999999999999999999999999987654
No 136
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.78 E-value=0.075 Score=38.90 Aligned_cols=61 Identities=18% Similarity=0.353 Sum_probs=42.4
Q ss_pred EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
|.+.+.|+||.+.+|+..|.+++++|....+...++. ..-.|.+.-. +......+.++|..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 4678999999999999999999999999998776633 2223333212 12445566665553
No 137
>PRK04435 hypothetical protein; Provisional
Probab=95.77 E-value=0.093 Score=46.75 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=50.5
Q ss_pred CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEeCCCCCcCCCh-HHHHHHHHHHH
Q 012814 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQ-TRLSLMEEQLK 197 (456)
Q Consensus 124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~~~~g~~l~d~-~~~~~l~~~L~ 197 (456)
.......|.+.+.|+||+|++|..+++++|+||......+. ++.+.-.|.+... +. ..++.|-++|+
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs-------~~~~~L~~Li~~L~ 133 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS-------SMEGDIDELLEKLR 133 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC-------ChHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999887664 4556556666542 12 25566655554
No 138
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=95.76 E-value=0.007 Score=48.62 Aligned_cols=61 Identities=16% Similarity=0.293 Sum_probs=45.1
Q ss_pred EEEEEeCC-cccHHHHHHHHHHhCCceEEEEEEecC-----C----ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 130 AIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWTH-----N----RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 130 ~i~v~~~D-rpGLL~~I~~~l~~~gi~I~~a~i~T~-----~----~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
+++|.|+| +.|+++.|+++|+++|+||.+.+-.+. + ......|.++.+ + ...+.++.+|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~----~~~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----P----ADLEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----C----CCHHHHHHHHHH
Confidence 47899999 999999999999999999987665321 1 245667777764 1 124677777764
No 139
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.73 E-value=0.014 Score=44.34 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=33.4
Q ss_pred EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEE
Q 012814 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFY 391 (456)
Q Consensus 349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~ 391 (456)
+-+.+.|+||+|.+|+..|+++|+||.+....+.++.+.=.|-
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~ 44 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVID 44 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEE
Confidence 4568999999999999999999999988876554444433333
No 140
>PRK11899 prephenate dehydratase; Provisional
Probab=95.72 E-value=0.042 Score=54.25 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=44.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCcee-eeEEEEEeCCCCCCC
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQA-VNVFYVRDASGNPVD 401 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~-~d~F~v~d~~g~~l~ 401 (456)
.|.|-+...|+||.|+++-.+|+++|||+.+.+..-.+.+- +=.||| |.+|..-+
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d 249 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPED 249 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCC
Confidence 46677777899999999999999999999999988776554 448888 66675433
No 141
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.71 E-value=0.011 Score=44.81 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=37.0
Q ss_pred EEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEE
Q 012814 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82 (456)
Q Consensus 38 V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~ 82 (456)
+.+.+.|+||++++++.+|++.|+||......+.+|.+.-.|.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence 678999999999999999999999998876655557776556554
No 142
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.60 E-value=0.03 Score=42.83 Aligned_cols=46 Identities=24% Similarity=0.445 Sum_probs=37.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEe
Q 012814 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVND 176 (456)
Q Consensus 131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~ 176 (456)
+.+...|+||.+++|++.|+++|+||.+..... .++...-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 456899999999999999999999999988765 3456665665544
No 143
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.55 E-value=0.11 Score=35.95 Aligned_cols=35 Identities=37% Similarity=0.619 Sum_probs=31.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC
Q 012814 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN 165 (456)
Q Consensus 131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~ 165 (456)
|.+.++|+||++++|+..|.++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999987643
No 144
>PRK04435 hypothetical protein; Provisional
Probab=95.43 E-value=0.13 Score=45.83 Aligned_cols=76 Identities=14% Similarity=0.037 Sum_probs=55.7
Q ss_pred EEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHH
Q 012814 24 RASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102 (456)
Q Consensus 24 ~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L 102 (456)
+.-+.....+....+.+.++|+||++++|+.+|+++|+||....... .+|.+--.|.+...+. ...++.|.+.|
T Consensus 58 vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L 132 (147)
T PRK04435 58 VFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKL 132 (147)
T ss_pred eECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHH
Confidence 33444455567789999999999999999999999999999888765 4576665676653211 12566666666
Q ss_pred CC
Q 012814 103 GP 104 (456)
Q Consensus 103 ~~ 104 (456)
+.
T Consensus 133 ~~ 134 (147)
T PRK04435 133 RN 134 (147)
T ss_pred Hc
Confidence 65
No 145
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.38 E-value=0.11 Score=39.67 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=36.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEE
Q 012814 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVN 175 (456)
Q Consensus 129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~ 175 (456)
+.+.+..+|+||.|.+++..|+++|+||.+....-. ++...-+|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 467889999999999999999999999998865442 33444445543
No 146
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.25 E-value=0.5 Score=49.05 Aligned_cols=100 Identities=11% Similarity=0.140 Sum_probs=67.1
Q ss_pred CeEEEEEE---eeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 012814 267 GYSVVNVK---CRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-R 342 (456)
Q Consensus 267 ~~~~v~V~---~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-r 342 (456)
+...|+|. .++++|++.++..+|.++|++|....... .+.. -.|.|.. +..++..+.|.+.+.. .
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~-s~~~-Is~~V~~---------~d~~~a~~~L~~~~~~~~ 327 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP-SETS-ISLTVDE---------TDADEAVRALKDQSGAAG 327 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC-CCce-EEEEEeH---------HHHHHHHHHHHHHHHhcC
Confidence 55678888 57889999999999999999997443221 1111 1355522 2233444455544311 1
Q ss_pred ------CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEE
Q 012814 343 ------VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRA 377 (456)
Q Consensus 343 ------~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a 377 (456)
..+...|.|.|. ++||+++++.++|.+.|+||...
T Consensus 328 ~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i 371 (401)
T TIGR00656 328 LDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI 371 (401)
T ss_pred CceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence 123456777775 78999999999999999999853
No 147
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.20 E-value=0.081 Score=40.00 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=38.2
Q ss_pred CcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 137 DRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 137 DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
|+||.|.+|+++|...|.||.+..+.. .++...-++.+... +...+.|...|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~--------~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD--------DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC--------chhHHHHHHHHhc
Confidence 789999999999999999999999987 44445545544441 2334666666654
No 148
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.19 E-value=0.13 Score=40.23 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=39.3
Q ss_pred EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCCCC
Q 012814 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNP 399 (456)
Q Consensus 349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~ 399 (456)
+-+...|+||-|+++-..|+.+|+|+.+.+....... .+=.||| |.+|..
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence 4455689999999999999999999999998776554 4447888 555644
No 149
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.10 E-value=0.069 Score=40.38 Aligned_cols=57 Identities=19% Similarity=0.426 Sum_probs=38.2
Q ss_pred CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814 355 DRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT 415 (456)
Q Consensus 355 DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~ 415 (456)
|+||+|.+|+.+|...|+||++..+........-.+.++-. |. +..+++|..+|.+.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~-~~---~~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS-GD---DREIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE-S----CCHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe-eC---chhHHHHHHHHhcc
Confidence 78999999999999999999999998844333333333211 21 23567777777654
No 150
>PRK07334 threonine dehydratase; Provisional
Probab=95.01 E-value=0.14 Score=53.28 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=50.5
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-----CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-----NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-----~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
....+.|.|.+.||||+|++|+.+|++.++||.+....+. ++.+.-.|.+.-. |.++++++.+.|++
T Consensus 323 ~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-------d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 323 AGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-------DAAHLQEVIAALRA 394 (403)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 3446899999999999999999999999999999998764 3454444444431 34667777766654
No 151
>PRK07334 threonine dehydratase; Provisional
Probab=94.82 E-value=0.46 Score=49.50 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=49.5
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec----C-ceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV----G-EQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~----g-~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
.+.|+|.+.||||+|.+|+++|++.++||.+....+. . ..+.=.|.+. .. +.+++++|.+.|.....
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~-V~----d~~~L~~vi~~Lr~~g~ 397 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE-TR----DAAHLQEVIAALRAAGF 397 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE-eC----CHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999999999999998764 2 2333233331 11 23577888888877644
No 152
>PRK06291 aspartate kinase; Provisional
Probab=94.34 E-value=1.5 Score=46.52 Aligned_cols=102 Identities=13% Similarity=0.194 Sum_probs=69.5
Q ss_pred CCeEEEEEEee---CchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-
Q 012814 266 KGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR- 341 (456)
Q Consensus 266 ~~~~~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~- 341 (456)
++...|+|.+. +.+|+++++..+|+++|++|.-....+..... .|.|.. ...++..+.|.+.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~---------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDE---------ADLEKALKALRREFGEG 387 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeH---------HHHHHHHHHHHHHHHHh
Confidence 35677888765 68999999999999999999765433322112 355532 2223334445444432
Q ss_pred ---c---CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814 342 ---R---VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAG 378 (456)
Q Consensus 342 ---r---~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~ 378 (456)
. ..+...|.|.|. ++||++.++..+|.+.|++|...-
T Consensus 388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence 1 124567888886 799999999999999999998544
No 153
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.16 E-value=0.53 Score=36.39 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=37.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (456)
Q Consensus 131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~ 176 (456)
+.+...|+||-|++|...|+++|+||....... .+....-.|++.-
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~ 48 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF 48 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence 345568999999999999999999999996665 3445667788876
No 154
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.14 E-value=1.2 Score=46.12 Aligned_cols=106 Identities=17% Similarity=0.282 Sum_probs=67.6
Q ss_pred CeEEEEEE---ecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814 34 ECTVVKVD---SVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (456)
Q Consensus 34 ~~~~V~V~---~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~ 110 (456)
+...|+|. .++++|.++++..+|.++|++|.--... ..+..+ .|.|...+ .+...+.|++.+... ..
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s~~~I-s~~V~~~d-----~~~a~~~L~~~~~~~-~~-- 328 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PSETSI-SLTVDETD-----ADEAVRALKDQSGAA-GL-- 328 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CCCceE-EEEEeHHH-----HHHHHHHHHHHHHhc-CC--
Confidence 34567777 5678999999999999999999743322 122222 35553211 122344444443221 00
Q ss_pred CcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 012814 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA 158 (456)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~ 158 (456)
.. .....+...|.|.|. ++||+++++..+|++.|+||..
T Consensus 329 -------~~--i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 329 -------DR--VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred -------ce--EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 00 122346778888875 7899999999999999999985
No 155
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.14 E-value=0.26 Score=42.05 Aligned_cols=53 Identities=9% Similarity=0.101 Sum_probs=42.5
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeee-EEEEEeCCCCC
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVN-VFYVRDASGNP 399 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d-~F~v~d~~g~~ 399 (456)
.+.|-+...|+||-|++|-..|+.+|||+.+.+....+..-++ .||| |.+|..
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~ 94 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR 94 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence 4567777799999999999999999999999998887665444 7777 555643
No 156
>PRK06635 aspartate kinase; Reviewed
Probab=94.12 E-value=0.67 Score=48.18 Aligned_cols=103 Identities=14% Similarity=0.207 Sum_probs=68.9
Q ss_pred CeEEEEEE-eeCchhHHHHHHHHHHhCCcEEEEEEEEecC-CceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hhh
Q 012814 267 GYSVVNVK-CRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLEAA---IRR 341 (456)
Q Consensus 267 ~~~~v~V~-~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~---l~~ 341 (456)
+...|+|. ..++||.++++..+|.+.|+||......... |..--.|.|.. +..++..+.|++. +.-
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~ 331 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA 331 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence 44555555 4778999999999999999999965444333 23443466532 2233344444442 111
Q ss_pred c----CCCceEEEEEe---CCCcchHHHHHHHHHHCCceEEEEE
Q 012814 342 R----VSEGLSLELCA---KDRVGLLSEVTRILRENGLSVTRAG 378 (456)
Q Consensus 342 r----~~~~~~lev~~---~DrpGlL~~It~~l~~~gi~I~~a~ 378 (456)
+ ......+.|.+ .|+||++++|.++|++.|++|....
T Consensus 332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 1 12445688876 5899999999999999999998853
No 157
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.95 E-value=0.74 Score=37.45 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=51.2
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (456)
Q Consensus 127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~ 202 (456)
..+.|-+..+|+||-|+++-..|+.+|+|+....... .+....-.|||.-. |. . + ..++.+-..|.+.|+.
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie--g~-~-~-~~~~~~l~~L~~~~~~ 84 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD--KK-S-A-PALDPIIKSLRNDIGA 84 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE--cC-C-C-HHHHHHHHHHHHHhCC
Confidence 4577777789999999999999999999999988776 34556678888763 54 2 3 3444444555554543
No 158
>PRK06635 aspartate kinase; Reviewed
Probab=93.94 E-value=0.8 Score=47.61 Aligned_cols=107 Identities=20% Similarity=0.283 Sum_probs=67.1
Q ss_pred EEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEEeC-CEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 012814 37 VVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114 (456)
Q Consensus 37 ~V~V~-~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~~~ 114 (456)
.|+|. -.++||.++++..+|.+.|+||.-...+... |..--.|.|...+. +...+.|++ +...+..
T Consensus 264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~~------ 331 (404)
T PRK06635 264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIGA------ 331 (404)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcCc------
Confidence 34444 4678999999999999999999965443322 23433465542111 123333433 1111110
Q ss_pred CCcccccccCCCceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 012814 115 WPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAE 160 (456)
Q Consensus 115 ~~~~~v~~~~~~~~t~i~v~~---~DrpGLL~~I~~~l~~~gi~I~~a~ 160 (456)
.. .....+...++|.+ .++||++++|..+|+++|+||....
T Consensus 332 ---~~--i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 332 ---ES--VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred ---ce--EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 00 11234577788876 5899999999999999999998754
No 159
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.81 E-value=0.33 Score=36.93 Aligned_cols=32 Identities=9% Similarity=0.028 Sum_probs=27.7
Q ss_pred EEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec
Q 012814 272 NVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD 304 (456)
Q Consensus 272 ~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~ 304 (456)
.|.-|||||-|.+++..++. |.||.+.+-...
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~ 33 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQ 33 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcC
Confidence 57789999999999999999 999998765443
No 160
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=93.77 E-value=0.24 Score=51.22 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=43.9
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCCCCCC
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNPVD 401 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~l~ 401 (456)
.+.+-+...|+||.|+++-..|+.+|||+.+.+..-.+.+ -+=.||| |..|..-+
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d 352 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRS 352 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCC
Confidence 4556677789999999999999999999999998866555 5558888 66675433
No 161
>PRK08210 aspartate kinase I; Reviewed
Probab=93.77 E-value=1.6 Score=45.43 Aligned_cols=98 Identities=13% Similarity=0.220 Sum_probs=66.0
Q ss_pred CCeEEEEEEeeCc-hhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh-hc-
Q 012814 266 KGYSVVNVKCRDR-AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR-RR- 342 (456)
Q Consensus 266 ~~~~~v~V~~~Dr-~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~-~r- 342 (456)
.+...|+|.+.+. +|.++++...|+++|+||....... .. -.|.+.. ...+++++.|.+.-. -.
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~~--is~~v~~---------~~~~~a~~~l~~~~~~v~~ 335 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--TE--VVFTVSD---------EDSEKAKEILENLGLKPSV 335 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--ce--EEEEEcH---------HHHHHHHHHHHHhCCcEEE
Confidence 3456777776555 9999999999999999998774332 11 2355532 223344444443210 01
Q ss_pred CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEE
Q 012814 343 VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTR 376 (456)
Q Consensus 343 ~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~ 376 (456)
..+...|.|.|. ++||++.++.++|++.|++|..
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 124566777775 7999999999999999999975
No 162
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=93.45 E-value=0.35 Score=45.66 Aligned_cols=61 Identities=13% Similarity=0.232 Sum_probs=43.5
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHH
Q 012814 345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEA 407 (456)
Q Consensus 345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~ 407 (456)
..+.+-+.-.||||.+..|+.+|.++||||....+........-.-.+ .. ..+++++.+++
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl-~v-D~~v~~~vl~~ 207 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTI-EI-DKNIDDHIKDA 207 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEE-Ee-CCCCCHHHHhh
Confidence 345678888999999999999999999999999998764333322323 22 34666555443
No 163
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.26 E-value=0.44 Score=53.14 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=50.0
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
-...|.|.+.||+|||++|+.++++.++||..+.+.+. ++.+...|.+.-. +..++.+|-..|+
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-------~~~~L~~l~~~L~ 730 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-------NLQVLGRVLGKLN 730 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 45689999999999999999999999999999998874 4555555555442 3466777766665
No 164
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.13 E-value=0.53 Score=35.80 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=45.4
Q ss_pred EEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 350 ELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 350 ev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
.|.-+||||-|..+++++.+ |.||....=...+.....++..-...+ +++++++.++|.+...
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~i~~~L~~~G~ 64 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD----REDLAELKERLEALGY 64 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC----HHHHHHHHHHHHHcCC
Confidence 56779999999999999999 999998876655533344444433322 3677888888877654
No 165
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=92.76 E-value=0.99 Score=35.03 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=38.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~ 176 (456)
.+-+..+|+||-|+++-..|+.+|+|+....... .+....-.|||.-
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 3455668999999999999999999999988776 4455677888876
No 166
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=92.75 E-value=0.46 Score=46.66 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=45.1
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeee-EEEEEeCCCCCCC
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVN-VFYVRDASGNPVD 401 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d-~F~v~d~~g~~l~ 401 (456)
.|.|-+..+|+||-|+++-..|+.+|||+.+.+..-.+..-++ .||| |..|..-+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~ 249 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDD 249 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCc
Confidence 5778888889999999999999999999999998877666555 7777 66676533
No 167
>PRK08210 aspartate kinase I; Reviewed
Probab=92.66 E-value=3.3 Score=43.10 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=65.2
Q ss_pred CeEEEEEEecCC-cchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 012814 34 ECTVVKVDSVNK-PGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA 112 (456)
Q Consensus 34 ~~~~V~V~~~Dr-pGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~ 112 (456)
+...|+|...+. ||.++++.+.|.++|+||.-...+.. . -.|.+... ..+.+.+.|... ..
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~--~--is~~v~~~---------~~~~a~~~l~~~-~~---- 331 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT--E--VVFTVSDE---------DSEKAKEILENL-GL---- 331 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc--e--EEEEEcHH---------HHHHHHHHHHHh-CC----
Confidence 445677776555 99999999999999999997644422 1 13555321 122333333331 10
Q ss_pred ccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 012814 113 KTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA 158 (456)
Q Consensus 113 ~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~ 158 (456)
. .....+...|.|.|. ++||+++++..+|++.|+||..
T Consensus 332 ------~--v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 332 ------K--PSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred ------c--EEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 0 112335677778775 7899999999999999999974
No 168
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=92.58 E-value=0.56 Score=35.54 Aligned_cols=46 Identities=26% Similarity=0.455 Sum_probs=35.6
Q ss_pred CceEEEEEEeC----CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 126 GDHTAIELIGR----DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 126 ~~~t~i~v~~~----DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
.+...|+|.++ |.||+++.++..|++.|+||.... ....+.+.|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-----S~~~~~ilV~~ 53 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-----SEISISILVKE 53 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-----ESSEEEEEEEG
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-----EeeeEEEEEeH
Confidence 35678888887 899999999999999999998777 23445566655
No 169
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.39 E-value=0.66 Score=51.65 Aligned_cols=64 Identities=13% Similarity=0.207 Sum_probs=49.2
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
-...|.|.+.||+|+|++|+.+++..++||.++.+.+.. +.+...|.+.-. +..++.+|-..|+
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~i~~~Lr 689 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-------DRVHLANIMRKIR 689 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 466899999999999999999999999999999988764 444545555442 3456677766655
No 170
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=92.18 E-value=0.47 Score=44.80 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=43.0
Q ss_pred cCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEe
Q 012814 123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVND 176 (456)
Q Consensus 123 ~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~ 176 (456)
+-.+....+-+.-.|+||.+..|+..|.++|+||...++.. .++.+.-+..+..
T Consensus 143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~ 198 (208)
T TIGR00719 143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK 198 (208)
T ss_pred EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence 33455677788889999999999999999999999999987 4566665555533
No 171
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.06 E-value=0.51 Score=42.40 Aligned_cols=47 Identities=17% Similarity=0.442 Sum_probs=37.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
-+.+.+.++||.|.++++.++++|.||..++.+..++.-....|..-
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 46788999999999999999999999999999985554344444444
No 172
>PRK06291 aspartate kinase; Provisional
Probab=92.05 E-value=4.4 Score=43.02 Aligned_cols=111 Identities=14% Similarity=0.216 Sum_probs=71.8
Q ss_pred CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (456)
Q Consensus 34 ~~~~V~V~~~---DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~ 110 (456)
+...|+|.+. +.+|+++++..+|+++|++|.--...+.. ..+ .|.|...+ -+...+.|++.+.....
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse-~sI-sf~V~~~d-----~~~av~~L~~~~~~~~~--- 389 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE-SNI-SLVVDEAD-----LEKALKALRREFGEGLV--- 389 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC-ceE-EEEEeHHH-----HHHHHHHHHHHHHHhcC---
Confidence 3457778764 68999999999999999999865433322 222 25554211 01244555555543110
Q ss_pred CcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEec
Q 012814 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWT 163 (456)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T 163 (456)
.. ..-..+...|.|.|. +++|+++++..+|.+.|+||.-....+
T Consensus 390 -------~~--i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs 436 (465)
T PRK06291 390 -------RD--VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS 436 (465)
T ss_pred -------cc--eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence 00 112335778888886 799999999999999999998555433
No 173
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=91.94 E-value=0.85 Score=50.92 Aligned_cols=63 Identities=29% Similarity=0.276 Sum_probs=49.2
Q ss_pred EEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 012814 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMDGCILDTEGEKERVIKCLEA 337 (456)
Q Consensus 269 ~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 337 (456)
..|.|.+.||+|+|++|+.++++.++||...++.+. ++.+.-.|.|. +.+-..+++|.+.|.+
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie------V~~~~~L~~l~~~L~~ 731 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE------IYNLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE------ECCHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999775 46655455552 3344677777777654
No 174
>PRK09034 aspartate kinase; Reviewed
Probab=91.88 E-value=4.3 Score=43.00 Aligned_cols=107 Identities=13% Similarity=0.240 Sum_probs=68.7
Q ss_pred CeEEEEEEe---eCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 012814 267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-R 342 (456)
Q Consensus 267 ~~~~v~V~~---~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-r 342 (456)
+.+.|++.+ ++++|+++++...|+++|++|.-. +.+..-+ .|.|...+ . +...+..+.+.|+..+.. .
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~~si-s~~v~~~~---~-~~a~~~~l~~el~~~~~~~~ 378 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGIDDL-SIIIRERQ---L-TPKKEDEILAEIKQELNPDE 378 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCCcEE-EEEEeHHH---h-hHHHHHHHHHHHHHhhCCce
Confidence 456777775 678999999999999999999875 2222222 46664321 0 000113333334332211 0
Q ss_pred ---CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEEEee
Q 012814 343 ---VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAGVST 381 (456)
Q Consensus 343 ---~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~i~T 381 (456)
..+-..|.+.|. ++||++++|..+|.+.|++|....-.+
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 124567888654 789999999999999999998875433
No 175
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=91.79 E-value=3.5 Score=47.02 Aligned_cols=102 Identities=10% Similarity=0.162 Sum_probs=69.3
Q ss_pred CCeEEEEEEee---CchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH---
Q 012814 266 KGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI--- 339 (456)
Q Consensus 266 ~~~~~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l--- 339 (456)
++...|+|.|. +++|++.++..+|+++|++|.-....+ ...-+ .|.|.. ...++..+.|.+.+
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~sI-sf~V~~---------~d~~~av~~L~~~f~~e 381 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYSI-SFCVPQ---------SDAAKAKRALEEEFALE 381 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCceE-EEEEeH---------HHHHHHHHHHHHHHHHH
Confidence 46678888865 679999999999999999996554332 22222 355533 22333344444433
Q ss_pred -hh-c------CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814 340 -RR-R------VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAG 378 (456)
Q Consensus 340 -~~-r------~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~ 378 (456)
.. . ..+...|.|.|. ++||++.++..+|.+.|++|....
T Consensus 382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 21 1 124567888886 789999999999999999997654
No 176
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.51 E-value=0.94 Score=50.42 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=48.8
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
-.+.|.|.+.||+|+|++|+.+++..++||.+.++.+.. +.+.-.|.+.-. +-.++.+|-..|.
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~ii~~L~ 673 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-------NYKHLLKIMLKIK 673 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 467899999999999999999999999999999998763 545444545432 3456666666554
No 177
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.50 E-value=1.2 Score=33.77 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=29.7
Q ss_pred CCeEEEEEEee----CchhHHHHHHHHHHhCCcEEEEEE
Q 012814 266 KGYSVVNVKCR----DRAKLMFDIVCTLTDMQYVVFHAA 300 (456)
Q Consensus 266 ~~~~~v~V~~~----Dr~gll~~i~~~L~~~~l~I~~a~ 300 (456)
.+...|+|.|+ |.||++++++..|++.|++|....
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 35567899988 799999999999999999998666
No 178
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.30 E-value=0.61 Score=41.90 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=37.0
Q ss_pred EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCC-EEEEEEEE
Q 012814 37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG-WFMDVFHV 81 (456)
Q Consensus 37 ~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g-~~~d~f~V 81 (456)
-+.+.+.|+||.|.+++++++++|.||.-++.+. .+| ...--|.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 4788999999999999999999999999999997 444 44433434
No 179
>PRK09034 aspartate kinase; Reviewed
Probab=91.27 E-value=5.5 Score=42.19 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=68.9
Q ss_pred eEEEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 012814 35 CTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG 111 (456)
Q Consensus 35 ~~~V~V~~---~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~ 111 (456)
.+.|++.+ ++++|.++++.+.|+++|++|.-- +.+...+ .|.|.+.+ ... .....+...|...+..
T Consensus 308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~~si-s~~v~~~~---~~~-a~~~~l~~el~~~~~~--- 376 (454)
T PRK09034 308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGIDDL-SIIIRERQ---LTP-KKEDEILAEIKQELNP--- 376 (454)
T ss_pred EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCCcEE-EEEEeHHH---hhH-HHHHHHHHHHHHhhCC---
Confidence 45666664 678999999999999999999864 2222222 46665321 100 0112333333322110
Q ss_pred cccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEec
Q 012814 112 AKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWT 163 (456)
Q Consensus 112 ~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T 163 (456)
.. .....+...|++.|. ++||+++++..+|+++|+||.-....+
T Consensus 377 ------~~--I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 377 ------DE--LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred ------ce--EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 00 112345778888654 789999999999999999998876544
No 180
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=91.14 E-value=0.14 Score=41.08 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=29.8
Q ss_pred EEEEEeeC-chhHHHHHHHHHHhCCcEEEEEEEE
Q 012814 270 VVNVKCRD-RAKLMFDIVCTLTDMQYVVFHAAIS 302 (456)
Q Consensus 270 ~v~V~~~D-r~gll~~i~~~L~~~~l~I~~a~i~ 302 (456)
+|+|.|+| +.|++++++++|+++|+||.+.+-.
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l 34 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL 34 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 37999999 9999999999999999999876653
No 181
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.78 E-value=1 Score=35.20 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=38.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (456)
Q Consensus 131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~ 176 (456)
+-+..+|+||-|+++-..|+.+|+|+....... .+....-.|||.-
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 445568999999999999999999999988877 4555677888876
No 182
>PRK11899 prephenate dehydratase; Provisional
Probab=90.61 E-value=1.9 Score=42.58 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=43.2
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeC
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDD 177 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~ 177 (456)
.|.|-+..+|+||.|+++-.+|+.+|+|+.+..... .++...=+||+.-.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e 244 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE 244 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE
Confidence 677888889999999999999999999999998876 45557779999873
No 183
>PRK06382 threonine dehydratase; Provisional
Probab=90.45 E-value=1.7 Score=45.31 Aligned_cols=67 Identities=28% Similarity=0.243 Sum_probs=48.8
Q ss_pred CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEe----c-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW----T-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~----T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
.....+.+.|.-+|+||-|.+|+..|.++|+||.+.... . ..+...-+|.+... +++..+.|.+.|.
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~ 397 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALR 397 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence 355688999999999999999999999999999887764 2 23445556666552 2344456665554
No 184
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=90.45 E-value=6.1 Score=41.60 Aligned_cols=101 Identities=13% Similarity=0.157 Sum_probs=65.1
Q ss_pred CeEEEEEEeeCc--hhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhc--
Q 012814 267 GYSVVNVKCRDR--AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR-- 342 (456)
Q Consensus 267 ~~~~v~V~~~Dr--~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r-- 342 (456)
+...|+|.+.+- +|++.++..+|+++|++|......+. ...+ .|.|.. ...++..+.|.......
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e~sI-s~~I~~---------~~~~~a~~~L~~~~~~~~~ 369 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-ETSI-SFTVDK---------EDADQAKTLLKSELNLSAL 369 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-CceE-EEEEEH---------HHHHHHHHHHHHHHHhcCc
Confidence 456777776443 69999999999999999976642222 2222 355532 11222223332211111
Q ss_pred -----CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814 343 -----VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAG 378 (456)
Q Consensus 343 -----~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~ 378 (456)
..+-..|.+.+. ++||++++|.++|++.|++|....
T Consensus 370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 124467888654 789999999999999999998775
No 185
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=90.33 E-value=1.8 Score=48.22 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=52.4
Q ss_pred EEEecCCCC-CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEe-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHH
Q 012814 25 ASVDNSSCP-ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102 (456)
Q Consensus 25 V~v~~~~~~-~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L 102 (456)
|.++..... -.+.|.|.+.||+|+|++|+.+++..++||.+....+. ++.+...|.+.- .+-+.++.|-..|
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L 688 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI 688 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence 456543222 24578999999999999999999999999999998775 456555555542 1224566666666
Q ss_pred CC
Q 012814 103 GP 104 (456)
Q Consensus 103 ~~ 104 (456)
..
T Consensus 689 r~ 690 (702)
T PRK11092 689 RV 690 (702)
T ss_pred hC
Confidence 55
No 186
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=90.22 E-value=0.76 Score=44.00 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=47.1
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEE--EEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIAC--VLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d--~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
....+|.+...|-||+|++|+++|+..|.||.+.-+--....+.. +..+.+. ..-+++.++.|++..
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gt--------d~VveQa~rQiedlV 143 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGT--------DGVVEQARRQIEDLV 143 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEecc--------HHHHHHHHHHHHHhh
Confidence 356788999999999999999999999999999887654333332 4455552 233455555555433
No 187
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.08 E-value=0.64 Score=48.54 Aligned_cols=60 Identities=25% Similarity=0.419 Sum_probs=46.1
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHH
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALR 409 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~ 409 (456)
.+.|-+.-.|+||.+..|+.+|+++|+||...+..+.|+.+--+| +.++ +++++.+++|+
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii---e~D~-~~~~~~~~~i~ 397 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI---DVDA-DYAEEALDALK 397 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE---EeCC-CCcHHHHHHHH
Confidence 467888999999999999999999999999999988886665444 4444 44444444444
No 188
>PLN02317 arogenate dehydratase
Probab=89.93 E-value=3 Score=42.96 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=47.5
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce---------------eeeEEEEEeCCCCCCChHHHHHHHH
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ---------------AVNVFYVRDASGNPVDMKTIEALRK 410 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~---------------~~d~F~v~d~~g~~l~~~~~~~L~~ 410 (456)
.|.|-+.-.|+||.|+++-.+|+.+|||+.+.+......+ -.=.||| |.+|..-+ ...+..-+
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d-~~~~~aL~ 360 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMAD-PRAQNALA 360 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCC-HHHHHHHH
Confidence 4667777789999999999999999999999987765443 2338888 55565433 33344444
Q ss_pred HHHH
Q 012814 411 EIGH 414 (456)
Q Consensus 411 ~l~~ 414 (456)
.|.+
T Consensus 361 ~L~~ 364 (382)
T PLN02317 361 HLQE 364 (382)
T ss_pred HHHH
Confidence 4544
No 189
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=89.88 E-value=2 Score=47.86 Aligned_cols=64 Identities=9% Similarity=0.189 Sum_probs=48.8
Q ss_pred eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecC-CceEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 012814 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLEA 337 (456)
Q Consensus 268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 337 (456)
...|.|.+.||+|+|++|+.+++..++||.+.++.+.+ +.+.-.|.|. +.+-..+..|...|..
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE------IKNYKHLLKIMLKIKT 674 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE------ECCHHHHHHHHHHHhC
Confidence 45788999999999999999999999999999998764 5544345442 3344677777776653
No 190
>PRK08818 prephenate dehydrogenase; Provisional
Probab=89.83 E-value=0.69 Score=47.56 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=39.1
Q ss_pred CceEEEEEeC-CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC
Q 012814 345 EGLSLELCAK-DRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDA 395 (456)
Q Consensus 345 ~~~~lev~~~-DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~ 395 (456)
..+.|-+.-+ |+||.|++|+.+|+++||||.+.++ ......+-.|||.-.
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~ 344 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE 344 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence 3466777776 9999999999999999999999998 433333434998544
No 191
>PRK06545 prephenate dehydrogenase; Validated
Probab=89.66 E-value=2.2 Score=43.64 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=42.7
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC
Q 012814 345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDA 395 (456)
Q Consensus 345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~ 395 (456)
..+.|.|.-+||||-|++|+..|.+.||||++.+|.-.-+....++.++..
T Consensus 289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~ 339 (359)
T PRK06545 289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK 339 (359)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC
Confidence 457899999999999999999999999999999996665566666666544
No 192
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.33 E-value=3.2 Score=33.08 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=37.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCC-hHHHHHHHHHHH
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGD-QTRLSLMEEQLK 197 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d-~~~~~~l~~~L~ 197 (456)
++.|.-+|+||=|++++.+|+ +.||....-.. ..+.+.-.+.+..+ + ++..+.+.+.|.
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-------~~~~~~~~i~~~L~ 63 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-------NGAEELAELLEDLK 63 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-------CcHHHHHHHHHHHH
Confidence 578889999999999999999 56666444333 22344434444442 2 355666666654
No 193
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.94 E-value=0.79 Score=47.85 Aligned_cols=50 Identities=26% Similarity=0.332 Sum_probs=44.3
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
....|.+.-.|+||.++.|+..|+++|+||...+..+.++.+.-+|-+..
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~ 386 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA 386 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC
Confidence 56788889999999999999999999999999999999988877776644
No 194
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=88.80 E-value=2.7 Score=41.43 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=43.8
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (456)
Q Consensus 127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~ 176 (456)
..|.|-+..+|+||-|+++-+.|+.+|+|+......- .++...=+||+.-
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~ 243 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI 243 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence 5888888889999999999999999999999988876 5566777888877
No 195
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.79 E-value=1.5 Score=44.95 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=43.1
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
-+.++.+.|.-+|+||-+++|+..|...|+||.+.+|.-..+...-++.++-
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~ 338 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF 338 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence 3568999999999999999999999999999999999764455555555554
No 196
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=88.74 E-value=2.1 Score=47.28 Aligned_cols=66 Identities=27% Similarity=0.347 Sum_probs=48.7
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEE-EEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIAC-VLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d-~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
..-.+.|.|.+.||+|+|.+|+.+|+..++||......+..++... .|.+.-. |-..+.+|-..|.
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~-------n~~~L~~i~~~l~ 690 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK-------NLNHLGRVLARLK 690 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC-------cHHHHHHHHHHHh
Confidence 3457889999999999999999999999999999999886544433 3333331 3355666655554
No 197
>PLN02551 aspartokinase
Probab=88.71 E-value=14 Score=39.88 Aligned_cols=104 Identities=14% Similarity=0.213 Sum_probs=66.5
Q ss_pred CCeEEEEEEee---CchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHH---HH
Q 012814 266 KGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEA---AI 339 (456)
Q Consensus 266 ~~~~~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~---~l 339 (456)
++.+.|+|.+. +.+|.++++...|+++|++|.-.. + ...- -.|.+...+-. . .+.+++.+.+ .+
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--s-Se~s-Is~~v~~~~~~-----~-~~~i~~~l~~l~~el 433 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--T-SEVS-ISLTLDPSKLW-----S-RELIQQELDHLVEEL 433 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--c-cCCE-EEEEEehhHhh-----h-hhhHHHHHHHHHHHh
Confidence 35677888765 689999999999999999998662 2 2222 23666432211 1 1122222222 12
Q ss_pred hh--c---CCCceEEEEEeC--CCcchHHHHHHHHHHCCceEEEEEE
Q 012814 340 RR--R---VSEGLSLELCAK--DRVGLLSEVTRILRENGLSVTRAGV 379 (456)
Q Consensus 340 ~~--r---~~~~~~lev~~~--DrpGlL~~It~~l~~~gi~I~~a~i 379 (456)
.+ + ..+...|.|.|. .+||++.++..+|.+.||+|.....
T Consensus 434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsq 480 (521)
T PLN02551 434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQ 480 (521)
T ss_pred hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEe
Confidence 21 1 123456666654 6899999999999999999987664
No 198
>PRK09181 aspartate kinase; Validated
Probab=88.66 E-value=8 Score=41.24 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=69.3
Q ss_pred CeEEEEEEee---CchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 012814 267 GYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-R 342 (456)
Q Consensus 267 ~~~~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-r 342 (456)
+.+.|+|.+. +.+|+..++..+|.++|++|. .+.+. .. --.|.|... ....+++.+.|++.+.. .
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss-~~-sis~~v~~~-------~~~~~~~~~~L~~~~~~~~ 396 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATN-AN-TITHYLWGS-------LKTLKRVIAELEKRYPNAE 396 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEec-Cc-EEEEEEcCC-------hHHHHHHHHHHHHhcCCce
Confidence 5677788654 689999999999999999997 22222 21 223555321 12334555555544421 1
Q ss_pred --CCCceEEEEEeCC--CcchHHHHHHHHHHCCceEEEEEE
Q 012814 343 --VSEGLSLELCAKD--RVGLLSEVTRILRENGLSVTRAGV 379 (456)
Q Consensus 343 --~~~~~~lev~~~D--rpGlL~~It~~l~~~gi~I~~a~i 379 (456)
..+-..|.+.|.. +||+.+++..+|.+.||||....-
T Consensus 397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 2345678888765 899999999999999999987653
No 199
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=88.61 E-value=2.3 Score=47.06 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=51.7
Q ss_pred EEEecC-CCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCc-eEEEEEEEccCCCCCCCHHHHHHHHHHHH
Q 012814 259 TVERLE-DKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH-ASQEYYIRHMDGCILDTEGEKERVIKCLE 336 (456)
Q Consensus 259 ~v~n~~-~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~-~~d~f~V~~~~g~~~~~~~~~~~l~~~L~ 336 (456)
.|++.. ..-...|.|.+-||+|+|++|+.+|+..+.||......+.++. +.-.|.+. +.+-..+.+|...|.
T Consensus 617 ~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~l~ 690 (701)
T COG0317 617 SWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLARLK 690 (701)
T ss_pred EecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHHHh
Confidence 444442 3445689999999999999999999999999999999886443 33233332 233456667766665
Q ss_pred H
Q 012814 337 A 337 (456)
Q Consensus 337 ~ 337 (456)
+
T Consensus 691 ~ 691 (701)
T COG0317 691 Q 691 (701)
T ss_pred c
Confidence 3
No 200
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.50 E-value=2 Score=45.19 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=47.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
.+.|.+...|+||.|++|+.+|.++|++|.+..-.........++++++.. +...++++.++|.+
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~ 412 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA 412 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence 578999999999999999999999999999886554333345566676532 23455555555554
No 201
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.95 E-value=3.7 Score=32.66 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=24.6
Q ss_pred EEEEEeeCchhHHHHHHHHHHhCCcEEEEEEE
Q 012814 270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAI 301 (456)
Q Consensus 270 ~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i 301 (456)
++.|.-|||||-|.+++.+|. +.||.+..-
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y 32 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNY 32 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEE
Confidence 477889999999999999999 667764443
No 202
>PRK06382 threonine dehydratase; Provisional
Probab=87.94 E-value=2.6 Score=43.97 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=47.6
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec----C-ceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV----G-EQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~----g-~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
+.+.+.|.-+|+||.|.+|+++|.++|+||.+.....+ . +.+.=+|.|. ..+ +...++|.+.|.+...
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~ve-t~~----~~~~~~v~~~L~~~Gy 401 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVN-VRG----QDHLDRILNALREMGY 401 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEE-eCC----HHHHHHHHHHHHHCCC
Confidence 45789999999999999999999999999988776421 1 2233344442 211 3455678888777644
No 203
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=87.82 E-value=1.8 Score=38.82 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=39.6
Q ss_pred eEEEEEe--CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHH
Q 012814 347 LSLELCA--KDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALR 409 (456)
Q Consensus 347 ~~lev~~--~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~ 409 (456)
-++++.. ++.||+++.|+..++++||+|..+-..-..-..+-..+|- ..+|+....+.+|+
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IV--te~~iP~~li~el~ 156 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIV--TERPIPGDLIDELK 156 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEE--EeccCCHHHHHHHh
Confidence 3566665 5679999999999999999999997543322233334442 13366644444443
No 204
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=87.80 E-value=22 Score=37.56 Aligned_cols=105 Identities=9% Similarity=0.080 Sum_probs=66.6
Q ss_pred CCeEEEEEEeeC---chhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhc
Q 012814 266 KGYSVVNVKCRD---RAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR 342 (456)
Q Consensus 266 ~~~~~v~V~~~D---r~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r 342 (456)
++...|+|.++. ++|.++++...|+++|+||..-........ -.|.+...+. +...+.+.+.+.+.+. +
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-~ 376 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-E 376 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc-e
Confidence 566778887543 459999999999999999975544333222 2466632111 1222333333222221 1
Q ss_pred C---CCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814 343 V---SEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAG 378 (456)
Q Consensus 343 ~---~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~ 378 (456)
. ..--.|.+.|. ..||+.+++.++|++.++||....
T Consensus 377 v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 377 VEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred EEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 1 12345666665 679999999999999999999877
No 205
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.64 E-value=2.2 Score=36.36 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=40.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEe
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVND 176 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~ 176 (456)
.+.|-+..+|+||-|+++-..|+.+|+|+........ +....-.|||.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 5777777799999999999999999999999887774 344556788765
No 206
>PRK08198 threonine dehydratase; Provisional
Probab=87.09 E-value=4.8 Score=41.85 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=34.5
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 012814 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162 (456)
Q Consensus 125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~ 162 (456)
......+.|.-+|+||-|.++...++++|.||.+....
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 45677999999999999999999999999999998765
No 207
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=87.04 E-value=4.6 Score=48.71 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=75.1
Q ss_pred CCCCCCCCChH----HHHHHhhc---CCCEEEEecCC--CCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE--
Q 012814 2 ANAYWPYFDPE----YESLSLRI---NPPRASVDNSS--CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-- 70 (456)
Q Consensus 2 ~~~Y~~~~~~~----~~~~~~~~---~~p~V~v~~~~--~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-- 70 (456)
+.+|-..|+|+ +..+++++ ++..+.+.... .++.+.+.++.+.++..|+++.-+|..+|+.|.+.+-+.
T Consensus 447 p~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~ 526 (1528)
T PF05088_consen 447 PASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIR 526 (1528)
T ss_pred CHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceee
Confidence 45788889998 55556555 33456555433 346789999999999999999999999999999998875
Q ss_pred e-CC--EEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 012814 71 D-GG--WFMDVFHVIDQQGKKITDGKTIDYIEKALGP 104 (456)
Q Consensus 71 ~-~g--~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~ 104 (456)
. +| ..+.-|.+..+.+...+.....+.++++|..
T Consensus 527 ~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~ 563 (1528)
T PF05088_consen 527 RADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEA 563 (1528)
T ss_pred cCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHH
Confidence 2 22 5566788887777654445566666666653
No 208
>PRK08818 prephenate dehydrogenase; Provisional
Probab=87.00 E-value=1.4 Score=45.42 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=39.6
Q ss_pred ceEEEEEEeC-CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 127 DHTAIELIGR-DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 127 ~~t~i~v~~~-DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
..+.|.+.-+ |+||-|++|...|+.+|+||.+..+ .......-.|++.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence 5777888886 9999999999999999999999999 43333443488876
No 209
>PRK14630 hypothetical protein; Provisional
Probab=86.55 E-value=8.8 Score=33.99 Aligned_cols=92 Identities=9% Similarity=-0.005 Sum_probs=64.2
Q ss_pred CchhHHHHHHHHHHhCCcEEEEEEEEecCC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCC
Q 012814 277 DRAKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKD 355 (456)
Q Consensus 277 Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r~~~~~~lev~~~D 355 (456)
|.-.+-..+..++..+|+.+.+......++ +.+ ..++...+|- .-+.++.+-+.+...+....+..|.+||+++.
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~gV---~idDC~~vSr~i~~~ld~~i~~~Y~LEVSSPG 81 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKI-QIVLYKKDSF---GVDTLCDLHKMILLILEAVLKYNFSLEISTPG 81 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCCC---CHHHHHHHHHHHHHHhcccCCCCeEEEEeCCC
Confidence 445567778889999999999999887654 555 4445444553 33678888888877776655788999999884
Q ss_pred CcchHHHHHHHHHHCCc
Q 012814 356 RVGLLSEVTRILRENGL 372 (456)
Q Consensus 356 rpGlL~~It~~l~~~gi 372 (456)
=-.-|...-..-+-.|=
T Consensus 82 ldRpL~~~~df~r~~G~ 98 (143)
T PRK14630 82 INRKIKSDREFKIFEGK 98 (143)
T ss_pred CCCcCCCHHHHHHhCCC
Confidence 44445555555555553
No 210
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=86.41 E-value=23 Score=37.24 Aligned_cols=108 Identities=21% Similarity=0.295 Sum_probs=65.6
Q ss_pred CeEEEEEEecC-C-cchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 012814 34 ECTVVKVDSVN-K-PGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG 111 (456)
Q Consensus 34 ~~~~V~V~~~D-r-pGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~ 111 (456)
+...|+|.+.+ . +|.++++.+.|.++|++|.-....+. +..+ .|.|...+ . +...+.|....... ..
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e~sI-s~~I~~~~-~----~~a~~~L~~~~~~~-~~--- 369 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-ETSI-SFTVDKED-A----DQAKTLLKSELNLS-AL--- 369 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-CceE-EEEEEHHH-H----HHHHHHHHHHHHhc-Cc---
Confidence 34566676544 3 79999999999999999976543332 2222 35554321 0 11222222211110 00
Q ss_pred cccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 012814 112 AKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE 160 (456)
Q Consensus 112 ~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~ 160 (456)
.. ..-..+...+++.|. ++||++++|...|+++|+||....
T Consensus 370 ------~~--I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 370 ------SS--VEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred ------ce--EEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 00 122346778888654 789999999999999999997765
No 211
>PRK09181 aspartate kinase; Validated
Probab=86.22 E-value=31 Score=36.82 Aligned_cols=106 Identities=19% Similarity=0.200 Sum_probs=67.3
Q ss_pred CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (456)
Q Consensus 34 ~~~~V~V~~~---DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~ 110 (456)
+.+.|+|.+. +.+|+.+++.+.|.++|++|. -+.+. ... -.|.|... . ...+.+.+.|...+...
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss-~~s-is~~v~~~--~-----~~~~~~~~~L~~~~~~~- 395 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATN-ANT-ITHYLWGS--L-----KTLKRVIAELEKRYPNA- 395 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEec-CcE-EEEEEcCC--h-----HHHHHHHHHHHHhcCCc-
Confidence 4556677544 689999999999999999997 23332 211 23555421 1 12233333343322110
Q ss_pred CcccCCcccccccCCCceEEEEEEeCC--cccHHHHHHHHHHhCCceEEEEEEe
Q 012814 111 GAKTWPSKQVGVHSVGDHTAIELIGRD--RPGLLSEISAVLANLRFNVAAAEVW 162 (456)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~v~~~D--rpGLL~~I~~~l~~~gi~I~~a~i~ 162 (456)
.+ . ..+...|.+.|.. +||+.+++..+|.+.|+||......
T Consensus 396 --------~i--~-~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg 438 (475)
T PRK09181 396 --------EV--T-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS 438 (475)
T ss_pred --------eE--E-ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence 11 1 1457788888764 8999999999999999999765543
No 212
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.20 E-value=5.6 Score=40.96 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=46.6
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-----CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-----HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-----~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
......+.|.-+|+||.|++++..++++|.||.+..-.. ..+.+.-.+.+... +++..+.|.+.|.
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~ 372 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILR 372 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence 345668999999999999999999999999999885442 23445555555442 2345556666554
No 213
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=86.18 E-value=34 Score=36.22 Aligned_cols=120 Identities=14% Similarity=0.180 Sum_probs=74.8
Q ss_pred CCeEEEEEEecC---CcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 012814 33 PECTVVKVDSVN---KPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT 109 (456)
Q Consensus 33 ~~~~~V~V~~~D---rpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~ 109 (456)
.+.+.|+|..+. ++|.++++.+.|..+|+||.--........ -.|.|...+. +...+.|++....... +
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-~ 376 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-E 376 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc-e
Confidence 345566666443 459999999999999999974433322222 3466653211 2344555555543321 0
Q ss_pred CCcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 110 ~~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
.....+.-.|.+.|. ..||..+++..+|++.++||.... .....-.|.|..
T Consensus 377 ------------v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~~ 430 (447)
T COG0527 377 ------------VEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVDE 430 (447)
T ss_pred ------------EEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEcc
Confidence 112234556666654 678999999999999999999877 233445566654
No 214
>PRK12483 threonine dehydratase; Reviewed
Probab=86.12 E-value=27 Score=37.72 Aligned_cols=137 Identities=12% Similarity=0.088 Sum_probs=86.2
Q ss_pred CeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHH-HHHHHHHHHH-Hh----
Q 012814 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEK-ERVIKCLEAA-IR---- 340 (456)
Q Consensus 267 ~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~-~~l~~~L~~~-l~---- 340 (456)
-...+.|.-|||||-|.+++..|... ||.+.+-......-..++......+ .+.. +.|.+.|++. +.
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~dl 416 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP-----RHDPRAQLLASLRAQGFPVLDL 416 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC-----hhhhHHHHHHHHHHCCCCeEEC
Confidence 44568899999999999999999988 8877665543322233343333222 2344 7788888653 10
Q ss_pred ---------------hcC---CCceEEEEEeCCCcchHHHHHHHHHH-CCceEEEEEEeecCceeeeEEEEEeCCCCCCC
Q 012814 341 ---------------RRV---SEGLSLELCAKDRVGLLSEVTRILRE-NGLSVTRAGVSTVGEQAVNVFYVRDASGNPVD 401 (456)
Q Consensus 341 ---------------~r~---~~~~~lev~~~DrpGlL~~It~~l~~-~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~ 401 (456)
.|. .+.-.+.+.=+.|||-|.++++.|.. .+|.-++=+ -.|.....+|. |..+.
T Consensus 417 sdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR--~~~~~~a~v~v-----gi~~~ 489 (521)
T PRK12483 417 TDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYR--NHGAADGRVLA-----GLQVP 489 (521)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeec--CCCCCceEEEE-----EEeeC
Confidence 112 23457888899999999999999986 355544433 34555555663 21222
Q ss_pred hHHHHHHHHHHHHhhh
Q 012814 402 MKTIEALRKEIGHTML 417 (456)
Q Consensus 402 ~~~~~~L~~~l~~~~~ 417 (456)
+++.+++.+.|.+...
T Consensus 490 ~~~~~~~~~~l~~~gy 505 (521)
T PRK12483 490 EDERAALDAALAALGY 505 (521)
T ss_pred hhHHHHHHHHHHHCCC
Confidence 3455777777766544
No 215
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=86.06 E-value=9.1 Score=28.10 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=32.4
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 130 ~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
.|++.|. +.||++++|.++|+++|+++.-....+.+ ..-.|.+..
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~ 50 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeH
Confidence 5666664 78999999999999999999877654422 333344443
No 216
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=84.68 E-value=5.4 Score=41.08 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=47.6
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec----C-ceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV----G-EQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~----g-~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
+...+.|.-+||||.|.+|++.++++|.||....-... . +.+.=.+.+ +..+ ++..++|.+.|.+...
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~v-et~~----~~~~~~i~~~L~~~G~ 376 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITL-ETRG----KEHLDEILKILRDMGY 376 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEE-EeCC----HHHHHHHHHHHHHcCC
Confidence 44579999999999999999999999999988854421 1 222223333 2222 3566788888877654
No 217
>PLN02551 aspartokinase
Probab=84.62 E-value=37 Score=36.71 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=67.4
Q ss_pred CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (456)
Q Consensus 34 ~~~~V~V~~~---DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~ 110 (456)
+.+.|+|.+. +.+|.++++...|.++|++|.-- .+ ....+ .|.+...+ .+ ..+...+.++..+.+ +..
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ss-Se~sI-s~~v~~~~-~~-~~~~i~~~l~~l~~e-l~~-- 435 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--AT-SEVSI-SLTLDPSK-LW-SRELIQQELDHLVEE-LEK-- 435 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ec-cCCEE-EEEEehhH-hh-hhhhHHHHHHHHHHH-hhc--
Confidence 4567788765 58999999999999999999855 22 22222 35554321 11 000011112111111 110
Q ss_pred CcccCCcccccccCCCceEEEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEec
Q 012814 111 GAKTWPSKQVGVHSVGDHTAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWT 163 (456)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~v~~~--DrpGLL~~I~~~l~~~gi~I~~a~i~T 163 (456)
+ .. ..-..+...|.|.|. .+||+++++..+|++.|+||......+
T Consensus 436 -~-----~~--V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 436 -I-----AV--VNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred -C-----Ce--EEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence 0 00 112245677777765 689999999999999999998766544
No 218
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=84.60 E-value=2.7 Score=40.39 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=47.5
Q ss_pred CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC-CCCCCChHHHHHHHHHHHHh
Q 012814 344 SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDA-SGNPVDMKTIEALRKEIGHT 415 (456)
Q Consensus 344 ~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~-~g~~l~~~~~~~L~~~l~~~ 415 (456)
.+..++.+--.|-||+|.+|+-+|+..|.||++.-+.-.. +.+.|.++-. .| ++..+++.+++|.+.
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~te--vk~LsrmTIVl~G---td~VveQa~rQiedl 142 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTE--VKALSRMTIVLQG---TDGVVEQARRQIEDL 142 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechh--hhhhhhceEEEec---cHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999998875433 3334422211 12 235667777777664
No 219
>PRK09224 threonine dehydratase; Reviewed
Probab=84.60 E-value=37 Score=36.54 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=86.5
Q ss_pred eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH-Hh------
Q 012814 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA-IR------ 340 (456)
Q Consensus 268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~-l~------ 340 (456)
...+.|.-|||||-|.+++..|. +.||.+.+-...+.....+|......+. +...+.|.+.|++. +.
T Consensus 328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ls~ 401 (504)
T PRK09224 328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDLSD 401 (504)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEECCC
Confidence 45788999999999999999999 6788776654433333334443332221 12377788888653 10
Q ss_pred -------------hcCC---CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHH
Q 012814 341 -------------RRVS---EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKT 404 (456)
Q Consensus 341 -------------~r~~---~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~ 404 (456)
.|.+ +.-.+.+.=+.|||-|-++...|. -+-||...+=.-.|...--++ + |..+.+..
T Consensus 402 ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr~~~~~~g~vl-v----gi~~~~~~ 475 (504)
T PRK09224 402 DELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYRNHGADYGRVL-A----GFQVPDAD 475 (504)
T ss_pred CHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEccCCcccccEE-E----EEecChhh
Confidence 1222 345788999999999999999776 778888888653443322232 2 22222234
Q ss_pred HHHHHHHHHHhhh
Q 012814 405 IEALRKEIGHTML 417 (456)
Q Consensus 405 ~~~L~~~l~~~~~ 417 (456)
.+++.+.|.+...
T Consensus 476 ~~~~~~~l~~~~~ 488 (504)
T PRK09224 476 EPEFEAFLDELGY 488 (504)
T ss_pred HHHHHHHHHHcCC
Confidence 5667777766443
No 220
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.50 E-value=2.6 Score=45.51 Aligned_cols=63 Identities=22% Similarity=0.415 Sum_probs=43.4
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHH
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRK 410 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~ 410 (456)
.+.+=+.-.|+||.+..|+..|.++++||...++............+ .. ..+++++.+++|++
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i-~~-D~~v~~~~l~~i~~ 514 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVL-SV-DDPVPEEVLEELRA 514 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEE-EC-CCCCCHHHHHHHhc
Confidence 45555667999999999999999999999999987754222222222 23 33666566566653
No 221
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=83.91 E-value=87 Score=35.90 Aligned_cols=181 Identities=12% Similarity=0.174 Sum_probs=97.6
Q ss_pred CCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814 125 VGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (456)
Q Consensus 125 ~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~ 201 (456)
..+.+.|+|.+. ++||+++++...|+++|++|......+.. ..-.|.+.. +...+....|++.+.
T Consensus 312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~----------~d~~~av~~L~~~f~ 379 (819)
T PRK09436 312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQ----------SDAAKAKRALEEEFA 379 (819)
T ss_pred eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeH----------HHHHHHHHHHHHHHH
Confidence 346778888865 67999999999999999999777554322 223444443 122333333333222
Q ss_pred CCCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEEee---Cc
Q 012814 202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DR 278 (456)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~~~---Dr 278 (456)
.+.. . . ....+.+. .+...|.|.|. ++
T Consensus 380 ~el~---------------------------~-----------------~--~~~~i~~~----~~valIsvvG~gm~~~ 409 (819)
T PRK09436 380 LELK---------------------------E-----------------G--LLEPLEVE----ENLAIISVVGDGMRTH 409 (819)
T ss_pred HHhc---------------------------c-----------------C--CcceEEEe----CCEEEEEEEccCcccC
Confidence 1100 0 0 00012221 24566788876 68
Q ss_pred hhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCcc
Q 012814 279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVG 358 (456)
Q Consensus 279 ~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r~~~~~~lev~~~DrpG 358 (456)
+|+..++..+|.+.|+||.-....+..-.. .|.|.. ...++..+.|.+.+-. ..+...|-+.|....|
T Consensus 410 ~gv~arif~aL~~~~InI~~IsqgsSe~~I--s~vV~~---------~d~~~al~~LH~~f~~-~~~~~~i~l~G~G~VG 477 (819)
T PRK09436 410 PGIAAKFFSALGRANINIVAIAQGSSERSI--SVVIDN---------DDATKALRACHQSFFL-SDQVLDVFVIGVGGVG 477 (819)
T ss_pred cCHHHHHHHHHHHCCCCEEEEEeccccceE--EEEEcH---------HHHHHHHHHHHHHHhc-ccccccEEEEecCHHH
Confidence 999999999999999999855433332222 244532 2344444555554411 1133445555554443
Q ss_pred --hHHHHH---HHHHHCCceEEEEEE
Q 012814 359 --LLSEVT---RILRENGLSVTRAGV 379 (456)
Q Consensus 359 --lL~~It---~~l~~~gi~I~~a~i 379 (456)
++.-+. ..|.+.|+++.-..|
T Consensus 478 ~~~~~~l~~~~~~l~~~~~~l~v~~i 503 (819)
T PRK09436 478 GALLEQIKRQQPWLKKKNIDLRVCGI 503 (819)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 222222 234444555554444
No 222
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.90 E-value=13 Score=27.31 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=28.5
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEec
Q 012814 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWT 163 (456)
Q Consensus 130 ~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T 163 (456)
.|.+.|. ++||+++++..+|+++|+++.-....+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 5666665 789999999999999999998876655
No 223
>PLN02550 threonine dehydratase
Probab=83.89 E-value=26 Score=38.34 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=86.2
Q ss_pred EEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecC-CceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH-H-----h-
Q 012814 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLEAA-I-----R- 340 (456)
Q Consensus 269 ~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~-l-----~- 340 (456)
..+.|.-+||||-|.+++..|... ||.+.+-.... +.+ .+++.... ..++..+.|.+.|++. + .
T Consensus 418 ~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~-----~~~~~~~~i~~~l~~~g~~~~~l~~ 489 (591)
T PLN02550 418 AVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEA-LVLYSVGV-----HTEQELQALKKRMESAQLRTVNLTS 489 (591)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCce-EEEEEEEe-----CCHHHHHHHHHHHHHCCCCeEeCCC
Confidence 568899999999999999999986 88776654432 222 22332222 2346788888888764 1 0
Q ss_pred -------------hcC--CCceEEEEEeCCCcchHHHHHHHHHH-CCceEEEEEEeecCceeeeEEEEEeCCCCCCChHH
Q 012814 341 -------------RRV--SEGLSLELCAKDRVGLLSEVTRILRE-NGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKT 404 (456)
Q Consensus 341 -------------~r~--~~~~~lev~~~DrpGlL~~It~~l~~-~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~ 404 (456)
.|. .+.-.+.+.=+.|||-|.++..+|.. .+|.-++=+ ..|+....+|.= ..+.+++
T Consensus 490 ~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR--~~~~~~a~vlvG-----i~v~~~e 562 (591)
T PLN02550 490 NDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYR--GQGETGANVLVG-----IQVPPEE 562 (591)
T ss_pred ChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEee--cCCCCCccEEEE-----EeeCHHH
Confidence 111 23457888899999999999998886 355544433 445555555532 2222356
Q ss_pred HHHHHHHHHHhhh
Q 012814 405 IEALRKEIGHTML 417 (456)
Q Consensus 405 ~~~L~~~l~~~~~ 417 (456)
.+++.+.|.+...
T Consensus 563 ~~~l~~~l~~~gy 575 (591)
T PLN02550 563 MQEFKSRANALGY 575 (591)
T ss_pred HHHHHHHHHHcCC
Confidence 6778777776654
No 224
>PRK06349 homoserine dehydrogenase; Provisional
Probab=83.82 E-value=5.2 Score=41.99 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=42.7
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
....+.|.+...|+||.|++|+..|.++|+||.+.......+....+++++.
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 3456889999999999999999999999999998877654445566777776
No 225
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.62 E-value=7.5 Score=30.25 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=37.8
Q ss_pred CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 354 KDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 354 ~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
.+.||++++|..+|+++|++|...- + ++ ..=.|-+.... ..+.++.+++|.++|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence 5789999999999999999999884 2 33 22245553332 11344456777777766
No 226
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=83.34 E-value=7.2 Score=40.41 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=43.8
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeC
Q 012814 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDD 177 (456)
Q Consensus 127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~ 177 (456)
..|.|-+..+|+||.|+++-..|+.+|+|+....... .+....=+||+.-.
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e 347 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ 347 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe
Confidence 4677777778999999999999999999999998885 66668889999873
No 227
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=83.15 E-value=4.9 Score=36.25 Aligned_cols=66 Identities=18% Similarity=0.383 Sum_probs=46.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL 200 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L 200 (456)
.-++.+.-.|.||.|+++++.|+..|.||.+..+.- ......-+-.++.+ |+...+++...|.+..
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-------~~~~~EQi~kQL~kLi 70 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-------DEQVLEQIIKQLNKLI 70 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-------CcchHHHHHHHHHhhc
Confidence 457788889999999999999999999999998764 33334434444442 1234566666665544
No 228
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.14 E-value=3 Score=45.08 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=41.1
Q ss_pred CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEE
Q 012814 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVN 175 (456)
Q Consensus 124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~ 175 (456)
-.+..+.+-+...|+||.+..|+..|.++++||...++.. .|+.+.-++.+.
T Consensus 448 ~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D 501 (526)
T PRK13581 448 AKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD 501 (526)
T ss_pred eeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC
Confidence 3445667777789999999999999999999999999987 445555555543
No 229
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.80 E-value=13 Score=28.97 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=37.9
Q ss_pred EEEEE---eCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHH-HHHHHHHH
Q 012814 348 SLELC---AKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIE-ALRKEIGH 414 (456)
Q Consensus 348 ~lev~---~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~-~L~~~l~~ 414 (456)
.|.|. ..++||++++|..+|+++|++|...- + ++ ..=.|-+... ....++.+. .|..+|..
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~~--d~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDNT--GSTSDQLLTQALLKELSQ 67 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEecc--ccchhHHHHHHHHHHHHh
Confidence 35552 46889999999999999999999874 2 22 2224555432 222122332 56666555
No 230
>PRK12483 threonine dehydratase; Reviewed
Probab=82.66 E-value=70 Score=34.60 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=76.1
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCChhHH-HHHHHHHCCC-CCCC
Q 012814 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTI-DYIEKALGPK-GHIT 109 (456)
Q Consensus 33 ~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~-~~L~~~L~~~-l~~~ 109 (456)
.....+.|.-|||||-|.+++.+|... ||.+-.-.. ..+. ..++....-.+. +.. +.|.++|... ....
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~-~~v~v~ie~~~~-----~~~~~~i~~~l~~~g~~~~ 414 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE-AHLFVGVQTHPR-----HDPRAQLLASLRAQGFPVL 414 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe-eEEEEEEEeCCh-----hhhHHHHHHHHHHCCCCeE
Confidence 355678999999999999999999988 887665543 2233 223433332221 243 7777777553 1110
Q ss_pred C----Cc-ccCCccccccc--CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEE
Q 012814 110 A----GA-KTWPSKQVGVH--SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLY 173 (456)
Q Consensus 110 ~----~~-~~~~~~~v~~~--~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~ 173 (456)
. .. +...+..+--. ....--++.|.-+.|||-|.+++..|... .||...+=.-.+.....+|.
T Consensus 415 dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~v 484 (521)
T PRK12483 415 DLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLA 484 (521)
T ss_pred ECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEE
Confidence 0 00 00000111111 12346678888999999999999999852 35544443333444444544
No 231
>PRK11898 prephenate dehydratase; Provisional
Probab=82.29 E-value=6.3 Score=39.05 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=45.8
Q ss_pred eEEEEEeCC-CcchHHHHHHHHHHCCceEEEEEEeecCceee-eEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 347 LSLELCAKD-RVGLLSEVTRILRENGLSVTRAGVSTVGEQAV-NVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 347 ~~lev~~~D-rpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~-d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
+.|-+.-.+ +||-|+++-..|+++|||+.+.+..-...+.+ =.||| |.+|.. ++..++++-+.|.+
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~-~~~~~~~al~~L~~ 264 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI-DDVLVAEALKELEA 264 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccC-CCHHHHHHHHHHHH
Confidence 445556544 69999999999999999999999876655544 47877 555754 33344444455544
No 232
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.02 E-value=18 Score=26.41 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=32.5
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 130 ~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
.+.+.|. +.||+++++...|+++|++|.-....+.+ ..-.|.+..
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~ 50 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence 5666665 77999999999999999999887665432 222355544
No 233
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=80.88 E-value=3.5 Score=44.57 Aligned_cols=63 Identities=16% Similarity=0.366 Sum_probs=43.4
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHH
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRK 410 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~ 410 (456)
++.+=+.-.|+||.+..|+.+|.+++|||...++........-...+ .. ..+++++.+++|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i-~~-D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLL-SL-DQPVPDEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEE-Ec-CCCCCHHHHHHHhc
Confidence 44555666899999999999999999999999887663322222222 23 33666566666654
No 234
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=80.65 E-value=5.5 Score=35.94 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=45.0
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNPVDMKTIEALRKEIGHT 415 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~ 415 (456)
..+.+.-.|.||.|.+++-.|++.|.||++..+.-.... ...+=.+.. | ++..++++.++|.+.
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g---~~~~~EQi~kQL~kL 69 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--G---DEQVLEQIIKQLNKL 69 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--C---CcchHHHHHHHHHhh
Confidence 357777889999999999999999999999887644322 333333332 2 234567777777665
No 235
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=80.55 E-value=3.6 Score=41.90 Aligned_cols=75 Identities=23% Similarity=0.386 Sum_probs=58.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh-hhhccccCCCC
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT-MLFNVKKVPAS 426 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~-~~~~~~~~~~~ 426 (456)
.|+|.+.||.||..++-..|...+|++...+|. +...-|+-.+ .++.+..+.|+.++... .+..|+..++|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid-----~~~~IYln~p---~l~~~~fs~L~aei~~I~GV~~vr~V~~m 73 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID-----PIGRIYLNFP---ELEFESFSSLMAEIRRIPGVTDVRTVPWM 73 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec-----CCCeEEEecc---ccCHHHHHHHHHHHhcCCCccceeeecCC
Confidence 389999999999999999999999999999983 3334677444 23346678888888773 45577888888
Q ss_pred CCCC
Q 012814 427 RSAY 430 (456)
Q Consensus 427 ~~~~ 430 (456)
|+.+
T Consensus 74 PseR 77 (511)
T COG3283 74 PSER 77 (511)
T ss_pred cchh
Confidence 8876
No 236
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=80.31 E-value=3 Score=45.10 Aligned_cols=52 Identities=13% Similarity=0.331 Sum_probs=40.9
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEe
Q 012814 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVND 176 (456)
Q Consensus 125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~ 176 (456)
.+..+.+-+...|+||.+..|+..|.++++||...++.. .|+.+.-++.+..
T Consensus 448 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~ 501 (525)
T TIGR01327 448 EPEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ 501 (525)
T ss_pred ecCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC
Confidence 345666677789999999999999999999999999886 4556665555533
No 237
>PRK09084 aspartate kinase III; Validated
Probab=80.09 E-value=64 Score=34.14 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=61.9
Q ss_pred CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (456)
Q Consensus 34 ~~~~V~V~~~---DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~ 110 (456)
+...|+|.+. +.+|.++++...|+++|++|.--. + ....+ .|.|...+-.........+++.+.|... .
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--s-se~sI-s~~i~~~~~~~~~~~~~~~~l~~el~~~-~--- 376 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--T-SEVSV-SLTLDTTGSTSTGDTLLTQALLTELSQL-C--- 376 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--c-cCcEE-EEEEechhhhhhhhHHHHHHHHHHHhcC-C---
Confidence 4557788654 689999999999999999998553 2 22222 3555432111000011223444444321 0
Q ss_pred CcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhC
Q 012814 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANL 152 (456)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~ 152 (456)
. ..-..+...|.+.|. ++||+.+++..+|.+.
T Consensus 377 --------~--i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~ 411 (448)
T PRK09084 377 --------R--VEVEEGLALVALIGNNLSKACGVAKRVFGVLEPF 411 (448)
T ss_pred --------e--EEEECCeEEEEEECCCcccCcChHHHHHHHHHhC
Confidence 0 112346778888886 7899999999999864
No 238
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=79.95 E-value=18 Score=26.75 Aligned_cols=28 Identities=21% Similarity=0.531 Sum_probs=24.8
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEE
Q 012814 130 AIELIGR---DRPGLLSEISAVLANLRFNVA 157 (456)
Q Consensus 130 ~i~v~~~---DrpGLL~~I~~~l~~~gi~I~ 157 (456)
.|.+.|. +.||+++++..+|.+.|+++.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5677775 789999999999999999995
No 239
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.83 E-value=9.5 Score=28.14 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=27.8
Q ss_pred EEEEEeC---CCcchHHHHHHHHHHCCceEEEEEEee
Q 012814 348 SLELCAK---DRVGLLSEVTRILRENGLSVTRAGVST 381 (456)
Q Consensus 348 ~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~i~T 381 (456)
.|.+.|. ++||++++|.++|.+.|+++....-.+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 3556665 789999999999999999998876544
No 240
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=79.51 E-value=5.7 Score=41.80 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=41.6
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeee--EEEEEeCCCCC
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVN--VFYVRDASGNP 399 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d--~F~v~d~~g~~ 399 (456)
.+.|-+...|+||-|+++-++|+++|||+.+.+.........+ .||| |.+|..
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfV-D~Eg~~ 85 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLV-DVELFH 85 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEE-EEEcCH
Confidence 4567777799999999999999999999999987776555444 7888 444543
No 241
>PRK08198 threonine dehydratase; Provisional
Probab=79.39 E-value=12 Score=38.89 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=48.3
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC----ceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG----EQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g----~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
+...+.|.-+|+||-|.++.+.++++|.||......... .....+...-+.. ++++.+.|.++|.+...
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~----~~~~~~~l~~~L~~~G~ 398 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETR----GPEHIEEILDALRDAGY 398 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeC----CHHHHHHHHHHHHHCCC
Confidence 446799999999999999999999999999988765421 1122222222221 23567788888877654
No 242
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=78.23 E-value=8.6 Score=40.26 Aligned_cols=66 Identities=17% Similarity=0.317 Sum_probs=46.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
.+.|-+...|+||-|++|-++|+++|||+.+.+....... .+=.|||. .+|.. . ..+.++-+.|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD-~eg~~-~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVE-FDEAS-D-RKLEGVIEHLRQ 82 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEE-EecCc-c-HHHHHHHHHHHH
Confidence 3567777799999999999999999999999887765433 34478884 44654 2 333444444443
No 243
>PRK09084 aspartate kinase III; Validated
Probab=78.20 E-value=38 Score=35.79 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=68.1
Q ss_pred CCeEEEEEEee---CchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-
Q 012814 266 KGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR- 341 (456)
Q Consensus 266 ~~~~~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~- 341 (456)
.+...|+|.+. +.+|.++++...|+++|++|.-... ... --.|.|...+-. ......+.+.+.+.+..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s---se~-sIs~~i~~~~~~----~~~~~~~~~~l~~el~~~ 375 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT---SEV-SVSLTLDTTGST----STGDTLLTQALLTELSQL 375 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec---cCc-EEEEEEechhhh----hhhhHHHHHHHHHHHhcC
Confidence 45677888765 6899999999999999999986652 222 224666432211 01111122222222321
Q ss_pred -c---CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeE-EEE
Q 012814 342 -R---VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNV-FYV 392 (456)
Q Consensus 342 -r---~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~-F~v 392 (456)
+ ..+-..|.|.|. ++||+++++..+|.+. +|.. -.+|...... |.|
T Consensus 376 ~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~--nI~~---I~qgsSe~sIS~vV 429 (448)
T PRK09084 376 CRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPF--NIRM---ICYGASSHNLCFLV 429 (448)
T ss_pred CeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhC--CeEE---EEEcCCCCcEEEEE
Confidence 1 134567888887 7999999999999874 4433 3344444443 555
No 244
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=78.07 E-value=20 Score=26.19 Aligned_cols=32 Identities=6% Similarity=0.027 Sum_probs=26.1
Q ss_pred EEEEEe---eCchhHHHHHHHHHHhCCcEEEEEEE
Q 012814 270 VVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAI 301 (456)
Q Consensus 270 ~v~V~~---~Dr~gll~~i~~~L~~~~l~I~~a~i 301 (456)
.|.+.| ++.+|+++++.++|++.|++|.-...
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 456665 57899999999999999999975543
No 245
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=77.92 E-value=13 Score=27.62 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=29.8
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEe
Q 012814 135 GRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVND 176 (456)
Q Consensus 135 ~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~ 176 (456)
..|+||.++++...|+++|++|........ ++...-.|.+..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~ 51 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK 51 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH
Confidence 468999999999999999999986654432 223333455543
No 246
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=77.25 E-value=3.8 Score=36.70 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=29.1
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE
Q 012814 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS 69 (456)
Q Consensus 34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~ 69 (456)
+..+|.....+.||+++.+++.++++|++|..+-..
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 445555556889999999999999999999976543
No 247
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=76.05 E-value=7.1 Score=42.10 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=33.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 012814 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG 383 (456)
Q Consensus 348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g 383 (456)
.++|.+.||.|+..+|...|..++|++...+|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 489999999999999999999999999999997653
No 248
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=75.95 E-value=27 Score=26.86 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=39.3
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 129 TAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 129 t~i~v~~---~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
+.+++.+ .+.||++++|..+|+++|+++.... +.+ ..-.|.+.. .....+......+.+.|++
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~--~~is~~v~~---~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSE--VSVSLTLDP---TKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCC--cEEEEEEEc---hhhccchHHHHHHHHHHHh
Confidence 3456643 5789999999999999999996653 322 333455544 2222222355666666654
No 249
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.52 E-value=29 Score=26.92 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=31.4
Q ss_pred EEEEE---eCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 130 AIELI---GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 130 ~i~v~---~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
.|++. ..++||++++|..+|+++|+||.-... +. ..-.|.+..
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~---s~-~~iSftv~~ 48 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT---SE-ISVALTLDN 48 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee---cC-CEEEEEEec
Confidence 45552 468899999999999999999998753 22 344455544
No 250
>PRK08526 threonine dehydratase; Provisional
Probab=75.48 E-value=44 Score=34.79 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=51.6
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce----eeeEEEEEeCCCCCCChHHHHHHHHHHHHhhhhcc
Q 012814 345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ----AVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNV 420 (456)
Q Consensus 345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~----~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~~~~ 420 (456)
+...+.+.-+||||-|.+++..+.+.+.||....-...... ...++..-... +++++++|.+.|.+... .+
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~l~~~g~-~~ 399 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK----GKEHQEEIRKILTEKGF-NF 399 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC----CHHHHHHHHHHHHHCCC-Ce
Confidence 56779999999999999999999999999998876554322 12222222222 24788899999988766 44
Q ss_pred c
Q 012814 421 K 421 (456)
Q Consensus 421 ~ 421 (456)
+
T Consensus 400 ~ 400 (403)
T PRK08526 400 Y 400 (403)
T ss_pred E
Confidence 4
No 251
>PRK14646 hypothetical protein; Provisional
Probab=75.46 E-value=37 Score=30.46 Aligned_cols=94 Identities=12% Similarity=0.103 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHhCCcEEEEEEEEecCC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeCC
Q 012814 279 AKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR--RVSEGLSLELCAKD 355 (456)
Q Consensus 279 ~gll~~i~~~L~~~~l~I~~a~i~t~~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--r~~~~~~lev~~~D 355 (456)
..+...+..++..+|+.+.+..+...++ +.+- .++...+|.-+ +-+.++.+-+.+.+.|.. ..+..|.+||+++.
T Consensus 7 ~~i~~li~p~~~~~G~eLvdve~~~~~~~~~Lr-V~IDk~~g~gV-tldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPG 84 (155)
T PRK14646 7 SKLEILLEKVANEFDLKICSLNIQTNQNPIVIK-IIIKKTNGDDI-SLDDCALFNTPASEEIENSNLLNCSYVLEISSQG 84 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCc-cHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCC
Confidence 3466778889999999999999998754 5554 44533333222 336788888888888853 45689999999885
Q ss_pred CcchHHHHHHHHHHCCceE
Q 012814 356 RVGLLSEVTRILRENGLSV 374 (456)
Q Consensus 356 rpGlL~~It~~l~~~gi~I 374 (456)
=-.-|..--.+-.-.|-.|
T Consensus 85 ldRpL~~~~df~r~~G~~v 103 (155)
T PRK14646 85 VSDELTSERDFKTFKGFPV 103 (155)
T ss_pred CCCcCCCHHHHHHhCCCEE
Confidence 5555777666666666554
No 252
>PRK14636 hypothetical protein; Provisional
Probab=74.64 E-value=37 Score=31.18 Aligned_cols=95 Identities=14% Similarity=0.054 Sum_probs=63.6
Q ss_pred CchhHHHHHHHHHHhCCcEEEEEEEEecCC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEe
Q 012814 277 DRAKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR--RVSEGLSLELCA 353 (456)
Q Consensus 277 Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--r~~~~~~lev~~ 353 (456)
|.+.+...+..++..+|+.+.+..+...++ +++- .++..++|..+ +-+.++.+-+.|.+.|.. ..+..|.|||++
T Consensus 3 ~~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lr-V~ID~~~~ggV-~lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSS 80 (176)
T PRK14636 3 DIAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQ-IMAERPDTRQL-VIEDCAALSRRLSDVFDELDPIEDAYRLEVSS 80 (176)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEE-EEEECCCCCCc-CHHHHHHHHHHHHHHhccCcCCCCCeEEEEeC
Confidence 345567778889999999999999988754 4554 44543432222 336788888888888853 356789999998
Q ss_pred CCCcchHHHHHHHHHHCCce
Q 012814 354 KDRVGLLSEVTRILRENGLS 373 (456)
Q Consensus 354 ~DrpGlL~~It~~l~~~gi~ 373 (456)
+.--.-|..--.+-+-.|-.
T Consensus 81 PGldRpL~~~~df~r~~G~~ 100 (176)
T PRK14636 81 PGIDRPLTRPKDFADWAGHE 100 (176)
T ss_pred CCCCCCCCCHHHHHHhCCCe
Confidence 84444455555555554433
No 253
>PRK14645 hypothetical protein; Provisional
Probab=74.45 E-value=46 Score=29.85 Aligned_cols=95 Identities=21% Similarity=0.204 Sum_probs=66.2
Q ss_pred CchhHHHHHHHHHHhCCcEEEEEEEEecCC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEe
Q 012814 277 DRAKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--VSEGLSLELCA 353 (456)
Q Consensus 277 Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r--~~~~~~lev~~ 353 (456)
+...+-..+..++..+|+.+.+..+...++ +.+- .++...+|..+ +-+.++.+-+.|.+.|... .+..|.|||++
T Consensus 7 ~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilr-V~ID~~~~~~v-~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSS 84 (154)
T PRK14645 7 NNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVL-VRIDRKDEQPV-TVEDLERASRALEAELDRLDPIEGEYRLEVES 84 (154)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCc-CHHHHHHHHHHHHHHhcccccCCCceEEEEeC
Confidence 345577778899999999999999988754 5554 44533334323 3367888888888888542 46789999998
Q ss_pred CCCcchHHHHHHHHHHCCce
Q 012814 354 KDRVGLLSEVTRILRENGLS 373 (456)
Q Consensus 354 ~DrpGlL~~It~~l~~~gi~ 373 (456)
+.--.-|...-.+-+-.|-.
T Consensus 85 PGldRpL~~~~df~r~~G~~ 104 (154)
T PRK14645 85 PGPKRPLFTARHFERFAGLK 104 (154)
T ss_pred CCCCCCCCCHHHHHHhCCCE
Confidence 85555566666666666633
No 254
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=74.44 E-value=49 Score=38.08 Aligned_cols=132 Identities=11% Similarity=0.146 Sum_probs=76.3
Q ss_pred CCeEEEEEEe---eCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-
Q 012814 266 KGYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR- 341 (456)
Q Consensus 266 ~~~~~v~V~~---~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~- 341 (456)
.+.+.|+|.+ .+.+|+++++...|+++|++|.-. +.....+ .|.+.+.+. ......++.+...|.+ +..
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I---~sse~si-s~~i~~~~~--~~~~~~~~~l~~~l~~-~~~i 392 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI---SSSETNV-TVSLDPSEN--LVNTDVLAALSADLSQ-ICRV 392 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE---EcCCCEE-EEEEccccc--cchHHHHHHHHHHHhh-cCcE
Confidence 3567788864 468999999999999999999655 2222221 355533221 0011233444444432 100
Q ss_pred c-CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeE-EEEEeCCCCCCChHHHHHHHHHHH
Q 012814 342 R-VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNV-FYVRDASGNPVDMKTIEALRKEIG 413 (456)
Q Consensus 342 r-~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~-F~v~d~~g~~l~~~~~~~L~~~l~ 413 (456)
. ..+-.+|.|.|. .+||+++++..+|.+.||++ -.+|...... |.|...+. .+.++.|.++|.
T Consensus 393 ~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~-----i~~gsSe~~Is~vV~~~d~----~~av~~LH~~f~ 460 (861)
T PRK08961 393 KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL-----ISQASNDLNLTFVIDESDA----DGLLPRLHAELI 460 (861)
T ss_pred EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE-----EECCCccccEEEEEeHHHH----HHHHHHHHHHHh
Confidence 1 124467888886 88999999999999977544 3344444454 44432211 134455666553
No 255
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=74.44 E-value=23 Score=25.82 Aligned_cols=51 Identities=29% Similarity=0.436 Sum_probs=34.0
Q ss_pred CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHH
Q 012814 354 KDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEI 412 (456)
Q Consensus 354 ~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l 412 (456)
.++||+.++|-++|.++|+++.... | ++ ..=.|++..... ++.+++|.++|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~~~~----~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDDSLL----PKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEehhhh----hHHHHHHHHhh
Confidence 4789999999999999999999873 3 33 333677754311 23445555544
No 256
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=74.06 E-value=31 Score=25.49 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.6
Q ss_pred EEEEEee---CchhHHHHHHHHHHhCCcEEE
Q 012814 270 VVNVKCR---DRAKLMFDIVCTLTDMQYVVF 297 (456)
Q Consensus 270 ~v~V~~~---Dr~gll~~i~~~L~~~~l~I~ 297 (456)
.|.+.|. +.||++.++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4677775 789999999999999999995
No 257
>PRK14634 hypothetical protein; Provisional
Probab=73.96 E-value=37 Score=30.45 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHhCCcEEEEEEEEecC-CceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeC
Q 012814 278 RAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR--RVSEGLSLELCAK 354 (456)
Q Consensus 278 r~gll~~i~~~L~~~~l~I~~a~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--r~~~~~~lev~~~ 354 (456)
...+-..+..++..+|+.+.+..+...+ ++.+ ..++...+|..+ +-+.++.+-+.|.+.|.. ..+..|.|||+++
T Consensus 6 ~~~i~~l~~~~~~~~G~elvdve~~~~~~~~~l-rV~ID~~~g~~v-~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSP 83 (155)
T PRK14634 6 LPDLETLASATAADKGFELCGIQVLTHLQPMTL-QVQIRRSSGSDV-SLDDCAGFSGPMGEALEASQLLTEAYVLEISSP 83 (155)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEE-EEEEECCCCCcc-cHHHHHHHHHHHHHHhcccccCCCCeEEEEeCC
Confidence 3456667778899999999999998875 4555 445544556323 336788888888888863 3467899999988
Q ss_pred CCcchHHHHHHHHHHCCce
Q 012814 355 DRVGLLSEVTRILRENGLS 373 (456)
Q Consensus 355 DrpGlL~~It~~l~~~gi~ 373 (456)
.--.-|..--.+-+-.|-.
T Consensus 84 GldRpL~~~~~f~r~~G~~ 102 (155)
T PRK14634 84 GIGDQLSSDRDFQTFRGFP 102 (155)
T ss_pred CCCCcCCCHHHHHHhCCCe
Confidence 5444455555555555543
No 258
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=73.02 E-value=1e+02 Score=35.57 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=63.3
Q ss_pred CeEEEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814 34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (456)
Q Consensus 34 ~~~~V~V~~---~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~ 110 (456)
+.+.|+|.+ .+.+|.++++.+.|+++|++|.-- .+ .+..+ .|.+.+... ....+.++.+...|... +
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~s-se~si-s~~i~~~~~--~~~~~~~~~l~~~l~~~-~--- 390 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SS-SETNV-TVSLDPSEN--LVNTDVLAALSADLSQI-C--- 390 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--Ec-CCCEE-EEEEccccc--cchHHHHHHHHHHHhhc-C---
Confidence 345677753 468999999999999999999643 22 22222 344443211 10122344444445421 1
Q ss_pred CcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceE
Q 012814 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNV 156 (456)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I 156 (456)
.. ....+...|.|.|. ++||+.+++..+|.+.|+++
T Consensus 391 ------~i----~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 391 ------RV----KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred ------cE----EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 01 11235678888886 88999999999999877544
No 259
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.78 E-value=34 Score=24.90 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=28.4
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEec
Q 012814 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWT 163 (456)
Q Consensus 130 ~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T 163 (456)
.+.+.|. ++||+++++...|++.|+++.-....+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5666665 789999999999999999998876644
No 260
>PRK14637 hypothetical protein; Provisional
Probab=72.49 E-value=46 Score=29.75 Aligned_cols=92 Identities=9% Similarity=0.026 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHhCCcEEEEEEEEecCC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhcC-CCceEEEEEeCC
Q 012814 278 RAKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRV-SEGLSLELCAKD 355 (456)
Q Consensus 278 r~gll~~i~~~L~~~~l~I~~a~i~t~~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r~-~~~~~lev~~~D 355 (456)
--|....+..++..+|+.+.+.++...++ +.+-+| +...+|- +-+.++.+-+.|.+.|..-. +..+.|||+++.
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~-ID~~~gV---~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPG 82 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAV-IYSAGGV---GLDDCARVHRILVPRLEALGGVRDVFLEVSSPG 82 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEE-EECCCCC---CHHHHHHHHHHHHHHhcccccccCcEEEEeCCC
Confidence 34777889999999999999999998754 565444 4333342 34678888888887775422 356889999875
Q ss_pred CcchHHHHHHHHHHCCce
Q 012814 356 RVGLLSEVTRILRENGLS 373 (456)
Q Consensus 356 rpGlL~~It~~l~~~gi~ 373 (456)
--.-|-..-.+-.-.|-.
T Consensus 83 ldRpL~~~~~f~r~~G~~ 100 (151)
T PRK14637 83 IERVIKNAAEFSIFVGET 100 (151)
T ss_pred CCCCCCCHHHHHHhCCCE
Confidence 444455555555555543
No 261
>PRK14640 hypothetical protein; Provisional
Probab=72.39 E-value=48 Score=29.62 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHhCCcEEEEEEEEecC-CceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeCCC
Q 012814 280 KLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR--RVSEGLSLELCAKDR 356 (456)
Q Consensus 280 gll~~i~~~L~~~~l~I~~a~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--r~~~~~~lev~~~Dr 356 (456)
.+-..+...+..+|+.+.+..+...+ ++.+ ..++...+|- +-+.++.+-++|...|.. ..+..|.+||+++.-
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~~~~~~~~l-rV~ID~~~gv---~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 82 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFIRAGKHSTL-RVYIDGENGV---SVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGL 82 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEE-EEEEECCCCC---CHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCC
Confidence 35556778899999999999998865 4555 4445434452 346789999999888863 346789999998855
Q ss_pred cchHHHHHHHHHHCCceE
Q 012814 357 VGLLSEVTRILRENGLSV 374 (456)
Q Consensus 357 pGlL~~It~~l~~~gi~I 374 (456)
-.-|...-..-.-.|-.|
T Consensus 83 ~RpL~~~~~f~r~~G~~v 100 (152)
T PRK14640 83 DRPLFKVAQFEKYVGQEA 100 (152)
T ss_pred CCcCCCHHHHHHhCCCeE
Confidence 555777777777666554
No 262
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=72.12 E-value=1.4e+02 Score=34.26 Aligned_cols=104 Identities=11% Similarity=0.065 Sum_probs=65.6
Q ss_pred CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814 34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA 110 (456)
Q Consensus 34 ~~~~V~V~~~---DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~ 110 (456)
+.+.|+|.+. +.+|.++++..+|.++|++|.--... .++..+ .|.+... ..+.+.+.|... ...
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~-~s~~si-s~~i~~~---------~~~~~~~~l~~~-~~~- 382 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVH-PDRQLL-QLAYTSE---------VADSALKLLDDA-ALP- 382 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEec-CCCcEE-EEEEeHH---------HHHHHHHHHHhh-cCC-
Confidence 4556777765 77888999999999999998644333 233222 2444311 112223333331 110
Q ss_pred CcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEE
Q 012814 111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAA 159 (456)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a 159 (456)
..+ .-..+...|.|.|. .+||+..++..+|.+.|+++...
T Consensus 383 -------~~i--~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 383 -------GEL--KLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred -------CcE--EEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 111 12346788899885 68999999999999999998544
No 263
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=71.97 E-value=31 Score=26.53 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=24.2
Q ss_pred EEEEE---eeCchhHHHHHHHHHHhCCcEEEEE
Q 012814 270 VVNVK---CRDRAKLMFDIVCTLTDMQYVVFHA 299 (456)
Q Consensus 270 ~v~V~---~~Dr~gll~~i~~~L~~~~l~I~~a 299 (456)
.|++. ..+.+|+++++..+|+++|+++..-
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i 35 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI 35 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 45554 3677999999999999999999544
No 264
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=71.89 E-value=33 Score=24.35 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=26.9
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEe
Q 012814 130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEVW 162 (456)
Q Consensus 130 ~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~ 162 (456)
.|++.+. +++|+++++...|+++++++......
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~ 37 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQG 37 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcC
Confidence 4566554 88999999999999999999776543
No 265
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.70 E-value=13 Score=26.27 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=30.6
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814 135 GRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (456)
Q Consensus 135 ~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~ 176 (456)
..|.||.++++...|.++|++|....... .++...-.|.+..
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 47889999999999999999998876643 2232344455544
No 266
>PRK14647 hypothetical protein; Provisional
Probab=71.58 E-value=50 Score=29.69 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCcEEEEEEEEecCC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeCCCc
Q 012814 281 LMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR--RVSEGLSLELCAKDRV 357 (456)
Q Consensus 281 ll~~i~~~L~~~~l~I~~a~i~t~~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--r~~~~~~lev~~~Drp 357 (456)
+-..+..++..+|+.+.+..+...++ ..+- .++....|- +-+.++.+-+.+.+.|.. ..+..|.|||+++.--
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lr-V~ID~~~gv---slddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~ 85 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLR-LFIDKEGGV---NLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLD 85 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEE-EEEeCCCCC---CHHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCC
Confidence 44566778999999999999998765 5553 444333442 336788888899888864 3467899999988544
Q ss_pred chHHHHHHHHHHCCceE
Q 012814 358 GLLSEVTRILRENGLSV 374 (456)
Q Consensus 358 GlL~~It~~l~~~gi~I 374 (456)
.-|...-..-.-.|-.|
T Consensus 86 RpL~~~~~f~r~~G~~v 102 (159)
T PRK14647 86 RPLKKEADYERYAGRLV 102 (159)
T ss_pred CcCCCHHHHHHhCCcEE
Confidence 44555555555555443
No 267
>PRK08526 threonine dehydratase; Provisional
Probab=71.57 E-value=27 Score=36.36 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=48.5
Q ss_pred CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-----ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-----RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-----~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
.......+.|.-+||||-|.+++..+.+.+.||.+..-.... +.+.-.+.+... +++..++|.+.|.
T Consensus 322 ~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~-------~~~~~~~~~~~l~ 393 (403)
T PRK08526 322 KSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK-------GKEHQEEIRKILT 393 (403)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence 456788999999999999999999999999999988764422 233333333331 3567777776664
No 268
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=71.38 E-value=52 Score=29.33 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHhCCcEEEEEEEEecCC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCC
Q 012814 280 KLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--VSEGLSLELCAKDR 356 (456)
Q Consensus 280 gll~~i~~~L~~~~l~I~~a~i~t~~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r--~~~~~~lev~~~Dr 356 (456)
-+-..+..++..+|+.+.+..+...++ ..+ ..+|....|- +-+.++.+-+.+.+.|... .+..|.|||+++.-
T Consensus 8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l-~V~Id~~~gv---~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi 83 (154)
T PRK00092 8 QLTELIEPVVEALGYELVDVEYVKEGRDSTL-RIYIDKEGGI---DLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGL 83 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEecCCCcEE-EEEEECCCCC---CHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCC
Confidence 355567888999999999999998754 444 3444333442 4478889988888888633 45789999998854
Q ss_pred cchHHHHHHHHHHCCce
Q 012814 357 VGLLSEVTRILRENGLS 373 (456)
Q Consensus 357 pGlL~~It~~l~~~gi~ 373 (456)
-.-|...-..-.-.|-.
T Consensus 84 ~RpL~~~~~f~r~~G~~ 100 (154)
T PRK00092 84 DRPLKKARDFRRFIGRE 100 (154)
T ss_pred CCcCCCHHHHHHhCCCe
Confidence 44455555555555543
No 269
>PLN02550 threonine dehydratase
Probab=71.01 E-value=1.5e+02 Score=32.58 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=72.8
Q ss_pred eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCC----CCC
Q 012814 35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG----HIT 109 (456)
Q Consensus 35 ~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l----~~~ 109 (456)
...+.|.-|||||-|.+++.+|... ||.+..-.- .-+.+. ++....-. .++..+.|.++|+..- ++.
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~-----~~~~~~~i~~~l~~~g~~~~~l~ 488 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEAL-VLYSVGVH-----TEQELQALKKRMESAQLRTVNLT 488 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceE-EEEEEEeC-----CHHHHHHHHHHHHHCCCCeEeCC
Confidence 4678899999999999999999986 777655432 222222 22222222 2356677777776531 111
Q ss_pred C---CcccCCcccc-cccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEE
Q 012814 110 A---GAKTWPSKQV-GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVL 172 (456)
Q Consensus 110 ~---~~~~~~~~~v-~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F 172 (456)
. .+.. -+-.+ ....-..--++.|.-+.|||-|-++..+|.. +.||...+=...++....+|
T Consensus 489 ~~~~~~~~-LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~YR~~~~~~a~vl 553 (591)
T PLN02550 489 SNDLVKDH-LRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHYRGQGETGANVL 553 (591)
T ss_pred CChHHhhh-hhheeccccccCceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEeecCCCCCccEE
Confidence 0 1100 00000 0001134567888899999999999997774 24555554433343333333
No 270
>PRK09224 threonine dehydratase; Reviewed
Probab=70.69 E-value=47 Score=35.72 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=72.0
Q ss_pred CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhH-HHHHHHHHCCC-CC---C
Q 012814 34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKT-IDYIEKALGPK-GH---I 108 (456)
Q Consensus 34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~-~~~L~~~L~~~-l~---~ 108 (456)
....+.|.-|||||-|.+++.+|. +.||..-.-.-.+.....+|....-.+. +. .+.|.+.|... .. .
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~-----~~~~~~i~~~L~~~gy~~~~l 399 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG-----QEERAEIIAQLRAHGYPVVDL 399 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh-----hhHHHHHHHHHHHcCCCeEEC
Confidence 456788999999999999999999 6788765543322222223443332221 23 56677777542 11 0
Q ss_pred C--CCcccCCcccccc-c-CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 012814 109 T--AGAKTWPSKQVGV-H-SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162 (456)
Q Consensus 109 ~--~~~~~~~~~~v~~-~-~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~ 162 (456)
. +..+...+-.|-- . ...+.-.+.|.=+.|||-|-+...+|. -+.||...+-.
T Consensus 400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 0 0000000001111 1 122466788889999999999999766 77899888764
No 271
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=70.51 E-value=19 Score=31.38 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (456)
Q Consensus 125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~ 176 (456)
....+.+.+.-.||.|.|+++-.++++.++||...+... ..|++.-+..+..
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 446788899999999999999999999999999998876 6777777776655
No 272
>PRK14639 hypothetical protein; Provisional
Probab=69.94 E-value=44 Score=29.44 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=60.2
Q ss_pred HHHHHHhCCcEEEEEEEEecCC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeCCCcchHH
Q 012814 285 IVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR--RVSEGLSLELCAKDRVGLLS 361 (456)
Q Consensus 285 i~~~L~~~~l~I~~a~i~t~~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--r~~~~~~lev~~~DrpGlL~ 361 (456)
+..++..+|+.+.+......++ +.+ ..++....| + +-+.++.+-+.|.+.|.. ..+..|.|||+++.--.-|.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~g--v-~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~ 78 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIY-RVYITKEGG--V-NLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLS 78 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEE-EEEEeCCCC--C-CHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCC
Confidence 4567889999999999998765 555 444533334 2 346788999999888864 34678999999885555566
Q ss_pred HHHHHHHHCCceE
Q 012814 362 EVTRILRENGLSV 374 (456)
Q Consensus 362 ~It~~l~~~gi~I 374 (456)
..-..-.-.|-.|
T Consensus 79 ~~~~f~r~~G~~v 91 (140)
T PRK14639 79 KIEHFAKSIGELV 91 (140)
T ss_pred CHHHHHHhCCCEE
Confidence 6666666666554
No 273
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=69.78 E-value=1.4e+02 Score=32.10 Aligned_cols=138 Identities=9% Similarity=0.071 Sum_probs=83.1
Q ss_pred CeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH-Hh-----
Q 012814 267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA-IR----- 340 (456)
Q Consensus 267 ~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~-l~----- 340 (456)
.-..+.|.-|||||-|.+++.+|.. .||.+.+-...+.....+|...... +++..+.|.+.|++. +.
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~-----~~~~~~~l~~~L~~~Gy~~~dls 396 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLS-----NPQERQEILARLNDGGYSVVDLT 396 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeC-----CHHHHHHHHHHHHHcCCCeEECC
Confidence 3457889999999999999999997 4777666554433333344433322 346788888888754 10
Q ss_pred --------------hcCC---CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChH
Q 012814 341 --------------RRVS---EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMK 403 (456)
Q Consensus 341 --------------~r~~---~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~ 403 (456)
.|.+ +.-+..+.=+-|||-|-+.-.+|. -+-||...+=...|.. ...-.+ |..+.+.
T Consensus 397 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~-~~~~It~f~Yr~~~~~-~g~~l~----gi~~~~~ 470 (499)
T TIGR01124 397 DDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQ-GYWNISLFHYRNHGAD-YGRVLA----GFQVPDH 470 (499)
T ss_pred CCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcC-CCCceeeEEEecCCcc-cCCEEE----EEecCch
Confidence 1122 245788889999998888766332 3347777775444432 121222 2222222
Q ss_pred HHHHHHHHHHHhhh
Q 012814 404 TIEALRKEIGHTML 417 (456)
Q Consensus 404 ~~~~L~~~l~~~~~ 417 (456)
..+.+.+.|.+...
T Consensus 471 ~~~~~~~~~~~~~~ 484 (499)
T TIGR01124 471 EPDQFEQFLAELGY 484 (499)
T ss_pred hHHHHHHHHHHcCC
Confidence 44666666655543
No 274
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=69.63 E-value=70 Score=36.60 Aligned_cols=101 Identities=9% Similarity=0.037 Sum_probs=66.0
Q ss_pred CCeEEEEEEee---CchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH-hh
Q 012814 266 KGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI-RR 341 (456)
Q Consensus 266 ~~~~~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l-~~ 341 (456)
++.+.|+|.+. +.+|.+.++..+|+++|++|......+. +.. -.|.+.. ...+++.+.|++.. ..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~s-is~~i~~---------~~~~~~~~~l~~~~~~~ 383 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQL-LQLAYTS---------EVADSALKLLDDAALPG 383 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-CcE-EEEEEeH---------HHHHHHHHHHHhhcCCC
Confidence 45677888875 7889999999999999999876543322 221 1244421 12233334443321 11
Q ss_pred c---CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEE
Q 012814 342 R---VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRA 377 (456)
Q Consensus 342 r---~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a 377 (456)
+ ...-..|.|.|. .+||+..++..+|.+.++++...
T Consensus 384 ~i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 384 ELKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred cEEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 1 123456888885 58999999999999999998554
No 275
>PRK14633 hypothetical protein; Provisional
Probab=69.60 E-value=62 Score=28.84 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeCCCcc
Q 012814 281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR--RVSEGLSLELCAKDRVG 358 (456)
Q Consensus 281 ll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--r~~~~~~lev~~~DrpG 358 (456)
+-..+..++..+|+.+.+..+...++..+- .++...+|- +-+.++.+-++|...|.. ..+..|.+||+++.=-.
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~lr-V~ID~~~Gv---~lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR 81 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTIR-IFIDHENGV---SVDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR 81 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEE-EEEeCCCCC---CHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 455677889999999999999877666554 444334553 346788999999888863 34678999999885555
Q ss_pred hHHHHHHHHHHCCceE
Q 012814 359 LLSEVTRILRENGLSV 374 (456)
Q Consensus 359 lL~~It~~l~~~gi~I 374 (456)
-|...-..-+-.|=.|
T Consensus 82 pL~~~~~f~r~~G~~v 97 (150)
T PRK14633 82 QIFNIIQAQALVGFNV 97 (150)
T ss_pred CCCCHHHHHHhCCCeE
Confidence 5777777766666543
No 276
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=69.52 E-value=36 Score=26.94 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=39.1
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEE
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV--GEQAVNVFYV 392 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~--g~~~~d~F~v 392 (456)
.+.+++.+.++|+.|.+|-++-.-.|+.+.....++. ++++.=-|-|
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 4679999999999999999999999999999988776 4554444544
No 277
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=69.16 E-value=18 Score=25.11 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=26.8
Q ss_pred EEEEEeCC---cccHHHHHHHHHHhCCceEEEEEEe
Q 012814 130 AIELIGRD---RPGLLSEISAVLANLRFNVAAAEVW 162 (456)
Q Consensus 130 ~i~v~~~D---rpGLL~~I~~~l~~~gi~I~~a~i~ 162 (456)
.++|.+.+ .||.++++..+|++++++|......
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 45566555 8999999999999999999877554
No 278
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=69.13 E-value=11 Score=26.40 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=26.1
Q ss_pred EEEEEeCC---CcchHHHHHHHHHHCCceEEEEEE
Q 012814 348 SLELCAKD---RVGLLSEVTRILRENGLSVTRAGV 379 (456)
Q Consensus 348 ~lev~~~D---rpGlL~~It~~l~~~gi~I~~a~i 379 (456)
.|++.+.+ .||+++++.++|.+++++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 35555555 899999999999999999987654
No 279
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.91 E-value=52 Score=25.45 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=37.7
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 135 ~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
..+.||++++|..+|+++|+||.-... +. ..-.|.+... ...+. .+..+.|.+.|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~~--~~~~~-~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDPD--PNGLD-PDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeCc--ccccc-hHHHHHHHHHHHh
Confidence 357899999999999999999998853 22 3344555442 11122 2356677776665
No 280
>PRK11898 prephenate dehydratase; Provisional
Probab=67.89 E-value=35 Score=33.73 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=39.8
Q ss_pred ceEEEEEEeCC-cccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814 127 DHTAIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (456)
Q Consensus 127 ~~t~i~v~~~D-rpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~ 176 (456)
..+.|-+...+ +||-|+++-..|+++|+|+......- .+....-.|||.-
T Consensus 195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~ 246 (283)
T PRK11898 195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV 246 (283)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE
Confidence 35666666655 69999999999999999999988776 3455667888876
No 281
>PRK14638 hypothetical protein; Provisional
Probab=66.63 E-value=76 Score=28.29 Aligned_cols=91 Identities=13% Similarity=0.121 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhCCcEEEEEEEEecC-CceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCC
Q 012814 280 KLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--VSEGLSLELCAKDR 356 (456)
Q Consensus 280 gll~~i~~~L~~~~l~I~~a~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r--~~~~~~lev~~~Dr 356 (456)
.+-.-+..++..+|+.+.+..+...+ ++.+- .++...+|. + +-+.++.+-+.|.+.|... .+..|.|||+++.-
T Consensus 9 ~i~~~~~~i~~~~G~elvdve~~~~~~~~~lr-V~ID~~~G~-v-~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 85 (150)
T PRK14638 9 KVRKEAERIAEEQGLEIFDVQYRRESRGWVLR-IIIDNPVGY-V-SVRDCELFSREIERFLDREDLIEHSYTLEVSSPGL 85 (150)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEecCCCcEEE-EEEECCCCC-c-CHHHHHHHHHHHHHHhccccccCCceEEEEeCCCC
Confidence 34456677889999999999999865 45554 444334453 2 3367888888888888632 45789999998854
Q ss_pred cchHHHHHHHHHHCCce
Q 012814 357 VGLLSEVTRILRENGLS 373 (456)
Q Consensus 357 pGlL~~It~~l~~~gi~ 373 (456)
-.-|...-..-+-.|=.
T Consensus 86 dRpL~~~~~f~r~~G~~ 102 (150)
T PRK14638 86 DRPLRGPKDYVRFTGKL 102 (150)
T ss_pred CCCCCCHHHHHHhCCCE
Confidence 44465555665555543
No 282
>PLN02317 arogenate dehydratase
Probab=65.80 E-value=44 Score=34.58 Aligned_cols=49 Identities=27% Similarity=0.364 Sum_probs=40.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCce---------------eEEEEEEEe
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR---------------IACVLYVND 176 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~---------------~~d~F~v~~ 176 (456)
.|.|-+.-.|+||-|+++-.+|+.+|+|+..........+ ..-+|||.-
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~ 346 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDF 346 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEE
Confidence 5778888899999999999999999999999887664333 556889877
No 283
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.76 E-value=46 Score=23.73 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=25.6
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 012814 130 AIELIG---RDRPGLLSEISAVLANLRFNVAAAE 160 (456)
Q Consensus 130 ~i~v~~---~DrpGLL~~I~~~l~~~gi~I~~a~ 160 (456)
.|++.+ .+.||++.++...|+++|+++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355654 3679999999999999999997775
No 284
>PRK08841 aspartate kinase; Validated
Probab=65.58 E-value=53 Score=34.13 Aligned_cols=95 Identities=14% Similarity=0.269 Sum_probs=59.6
Q ss_pred CCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 012814 266 KGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345 (456)
Q Consensus 266 ~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r~~~ 345 (456)
++.+.|++.+ +.+.++.+.|+++|+++..-. +....+ .|.+.. ...++++..+.+.+ ....+
T Consensus 256 ~~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~--~~~~~~--~~~v~~---------~~~~~~~~~~~~~i-~~~~~ 317 (392)
T PRK08841 256 RDLALIEVES----ESLPSLTKQCQMLGIEVWNVI--EEADRA--QIVIKQ---------DACAKLKLVFDDKI-RNSES 317 (392)
T ss_pred CCeEEEEecc----chHHHHHHHHHHcCCCEEEEE--ecCCcE--EEEECH---------HHHHHHHHhCcccE-EEeCC
Confidence 3556677755 357899999999999887553 221111 245521 22222221111100 01134
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEE
Q 012814 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAG 378 (456)
Q Consensus 346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~ 378 (456)
-..|.+.|...||+.+++.++|.+.|++|....
T Consensus 318 ~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 318 VSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 567999999999999999999999999995544
No 285
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=65.15 E-value=41 Score=24.38 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=28.2
Q ss_pred CCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 136 RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 136 ~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
.++||+.++|..+|+++|+++.-.. | +. ..-.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 4779999999999999999999873 3 22 444566655
No 286
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.04 E-value=23 Score=24.95 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=24.3
Q ss_pred eCCCcchHHHHHHHHHHCCceEEEEEE
Q 012814 353 AKDRVGLLSEVTRILRENGLSVTRAGV 379 (456)
Q Consensus 353 ~~DrpGlL~~It~~l~~~gi~I~~a~i 379 (456)
..|.||++.++.++|.++|++|.....
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 468899999999999999999988755
No 287
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=64.54 E-value=38 Score=26.10 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=36.1
Q ss_pred CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814 354 KDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGH 414 (456)
Q Consensus 354 ~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~ 414 (456)
...||++++|-++|+++|++|...-. ++ ..=.|-+.. . .+.++.+++|.++|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~--~-~~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM--E-NAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh--h-hcChHHHHHHHHHHHH
Confidence 35699999999999999999998742 33 222444432 2 2232356777777766
No 288
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=63.99 E-value=19 Score=26.69 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.8
Q ss_pred eCCCcchHHHHHHHHHHCCceEEEEEE
Q 012814 353 AKDRVGLLSEVTRILRENGLSVTRAGV 379 (456)
Q Consensus 353 ~~DrpGlL~~It~~l~~~gi~I~~a~i 379 (456)
..|+||.+++|.++|.+.|++|.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 368999999999999999999986643
No 289
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.97 E-value=38 Score=26.61 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=36.2
Q ss_pred eCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCC--hHHHHHHHHHHHH
Q 012814 353 AKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVD--MKTIEALRKEIGH 414 (456)
Q Consensus 353 ~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~--~~~~~~L~~~l~~ 414 (456)
..+.||++++|-.+|+++|++|...- + ++ ..=.|-+...+...+. ...+++|+++|.+
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 35889999999999999999999884 2 33 2225656433221111 1244566666554
No 290
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=63.34 E-value=52 Score=23.45 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=25.5
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 012814 130 AIELIG---RDRPGLLSEISAVLANLRFNVAAAE 160 (456)
Q Consensus 130 ~i~v~~---~DrpGLL~~I~~~l~~~gi~I~~a~ 160 (456)
.+++.+ .+.||++.++...|+++|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 355654 4679999999999999999997765
No 291
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=62.82 E-value=43 Score=38.84 Aligned_cols=80 Identities=9% Similarity=0.042 Sum_probs=56.4
Q ss_pred CCCEEEEecCC-CCCeEEEEE---EecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCChhHH
Q 012814 21 NPPRASVDNSS-CPECTVVKV---DSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTI 95 (456)
Q Consensus 21 ~~p~V~v~~~~-~~~~~~V~V---~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~ 95 (456)
..|.+.+.... +.....+.+ --+...|+|..++.++..+||.+..+.+-+ .+|..+-.|+|....+....+..++
T Consensus 215 ~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~~ 294 (1002)
T PTZ00324 215 VGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSIE 294 (1002)
T ss_pred CCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcccccHH
Confidence 56888777554 223334444 346678899999999999999999999988 5888888999987544422222345
Q ss_pred HHHHH
Q 012814 96 DYIEK 100 (456)
Q Consensus 96 ~~L~~ 100 (456)
+.+++
T Consensus 295 ~~~~~ 299 (1002)
T PTZ00324 295 DRASL 299 (1002)
T ss_pred HHHHh
Confidence 55554
No 292
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.80 E-value=43 Score=24.29 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=27.7
Q ss_pred EEEEEeC---CCcchHHHHHHHHHHCCceEEEEEEee
Q 012814 348 SLELCAK---DRVGLLSEVTRILRENGLSVTRAGVST 381 (456)
Q Consensus 348 ~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~i~T 381 (456)
.+.+.|. ++||+++++.+.|++.|++|......+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3556664 789999999999999999998876544
No 293
>PRK14632 hypothetical protein; Provisional
Probab=62.07 E-value=92 Score=28.46 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeCCCcc
Q 012814 281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR--RVSEGLSLELCAKDRVG 358 (456)
Q Consensus 281 ll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--r~~~~~~lev~~~DrpG 358 (456)
+-.-+..++..+|+.+.+..+...+++.+- .++....|- +-+.++.+-+.|.+.|.. ..+..|.|||+++.--.
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~lr-V~ID~~~GV---~ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 85 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVVR-LFVDGPEGV---TIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER 85 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEE-EEEECCCCC---CHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 445566788999999999998754445554 444333443 346788898899888863 34678999999885444
Q ss_pred hHHHHHHHHHHCCce
Q 012814 359 LLSEVTRILRENGLS 373 (456)
Q Consensus 359 lL~~It~~l~~~gi~ 373 (456)
-|...-..-.-.|=.
T Consensus 86 pL~~~~~f~r~iG~~ 100 (172)
T PRK14632 86 PFFRAEQMSPYVGRQ 100 (172)
T ss_pred cCCCHHHHHHhCCCE
Confidence 466665655555543
No 294
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=61.27 E-value=53 Score=34.55 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=40.9
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND 176 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~ 176 (456)
.+.|-+...|+||-|+++-.+|+.+|+|+....... .+....-.|+|.-
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 577778889999999999999999999999988765 3444566788877
No 295
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=60.82 E-value=72 Score=24.30 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=28.8
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEecCC
Q 012814 129 TAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHN 165 (456)
Q Consensus 129 t~i~v~~---~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~ 165 (456)
+.|++.+ .+.+|+++++..+|+++++++......+.+
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~ 41 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE 41 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 3566644 378999999999999999999877665433
No 296
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.56 E-value=1e+02 Score=27.70 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhCCcEEEEEEEEecC-CceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeC-
Q 012814 279 AKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--VSEGLSLELCAK- 354 (456)
Q Consensus 279 ~gll~~i~~~L~~~~l~I~~a~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r--~~~~~~lev~~~- 354 (456)
..+..-+-.++.++|+.+.+.++...+ ++++.+|. +..|.. +-+-++++.+.+.+.|... .+..|.+||+++
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~i--d~~g~v--~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPG 83 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYI--DKEGGV--TLDDCADVSRAISALLDVEDPIEGAYFLEVSSPG 83 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEe--CCCCCC--CHHHHHHHHHHHHHHhccCCcccccEEEEeeCCC
Confidence 456667778899999999999999987 57775554 333332 2357888888888888643 356899999987
Q ss_pred -CCcchHHHHHHHHHHCCc
Q 012814 355 -DRVGLLSEVTRILRENGL 372 (456)
Q Consensus 355 -DrpGlL~~It~~l~~~gi 372 (456)
||| |.....+-.-.|-
T Consensus 84 ldRp--L~~~~~f~r~~G~ 100 (153)
T COG0779 84 LDRP--LKTAEHFARFIGE 100 (153)
T ss_pred CCCC--cCCHHHHHHhcCc
Confidence 566 4444444444443
No 297
>PRK14643 hypothetical protein; Provisional
Probab=59.68 E-value=1.1e+02 Score=27.72 Aligned_cols=92 Identities=10% Similarity=0.032 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhCCcEEEEEEEEecCC-ceEEEEEEEc---cCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEe
Q 012814 280 KLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRH---MDGCILDTEGEKERVIKCLEAAIRR--RVSEGLSLELCA 353 (456)
Q Consensus 280 gll~~i~~~L~~~~l~I~~a~i~t~~g-~~~d~f~V~~---~~g~~~~~~~~~~~l~~~L~~~l~~--r~~~~~~lev~~ 353 (456)
.+-.-+..++..+|+.+.+......++ +.+ ..++.+ .+|. + +-+-++.+.+.+.+.|.. ..+..|.+||++
T Consensus 10 ~l~~l~~p~~~~~G~eL~die~~~~~~~~~l-rV~Id~~~~~~gg-v-tldDC~~vSr~is~~LD~~d~i~~~Y~LEVSS 86 (164)
T PRK14643 10 QINELVNKELEVLNLKVYEINNLKEFENDMI-QILVEDILQANKP-L-DFDILIKANDLVSNKIDQFIKTSEKYLLEISS 86 (164)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEE-EEEEecCCCcCCC-c-CHHHHHHHHHHHHHHhCccCCCCCCeEEEecC
Confidence 345566778899999999999998755 555 445533 2332 2 336788888888888863 356889999999
Q ss_pred CCCcchHHHHHHHHHHCCceE
Q 012814 354 KDRVGLLSEVTRILRENGLSV 374 (456)
Q Consensus 354 ~DrpGlL~~It~~l~~~gi~I 374 (456)
+.--.-|...-.+-.-.|-.|
T Consensus 87 PGleRpL~~~~df~r~~G~~V 107 (164)
T PRK14643 87 SGIEKQIRSQEELVKALNQWV 107 (164)
T ss_pred CCCCCCCCCHHHHHHhcCCeE
Confidence 866666766666666666544
No 298
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=55.51 E-value=75 Score=25.18 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=49.3
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR 201 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~ 201 (456)
.+.+++.+.++|+.|.+|-++..-.|..+.....++. ++.+.--|.|.. ..+ .+-|...|.+..+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~------~~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRS------VDLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCC------hHHHHHHHHHHcc
Confidence 4788999999999999999999999999999998884 566665566644 233 2556666665544
No 299
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=55.30 E-value=27 Score=24.86 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=26.3
Q ss_pred EEEEEeC---CCcchHHHHHHHHHHCCceEEEEEE
Q 012814 348 SLELCAK---DRVGLLSEVTRILRENGLSVTRAGV 379 (456)
Q Consensus 348 ~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~i 379 (456)
.|++.+. +++|++++|..+|.+.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 3566554 8899999999999999999977654
No 300
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.18 E-value=57 Score=23.23 Aligned_cols=30 Identities=13% Similarity=0.401 Sum_probs=25.2
Q ss_pred EEEEe---CCCcchHHHHHHHHHHCCceEEEEE
Q 012814 349 LELCA---KDRVGLLSEVTRILRENGLSVTRAG 378 (456)
Q Consensus 349 lev~~---~DrpGlL~~It~~l~~~gi~I~~a~ 378 (456)
|.+.+ .+.||+++++..+|.+.|+++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 55654 3779999999999999999997775
No 301
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.62 E-value=86 Score=23.20 Aligned_cols=35 Identities=6% Similarity=-0.004 Sum_probs=26.2
Q ss_pred EEEEEee--CchhHHHHHHHHHHhCCcEEEEEEEEec
Q 012814 270 VVNVKCR--DRAKLMFDIVCTLTDMQYVVFHAAISSD 304 (456)
Q Consensus 270 ~v~V~~~--Dr~gll~~i~~~L~~~~l~I~~a~i~t~ 304 (456)
.|.+.|. ..+|++.++..+|++.|++|.-....+.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 3556654 4689999999999999999975544443
No 302
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.32 E-value=87 Score=23.17 Aligned_cols=35 Identities=26% Similarity=0.193 Sum_probs=27.3
Q ss_pred EEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEecC
Q 012814 130 AIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWTH 164 (456)
Q Consensus 130 ~i~v~~~--DrpGLL~~I~~~l~~~gi~I~~a~i~T~ 164 (456)
.+.+.|. ..||++.++..+|++.|++|......+.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 4556654 4689999999999999999987665543
No 303
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.25 E-value=86 Score=23.12 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=22.2
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCceE
Q 012814 130 AIELIGR---DRPGLLSEISAVLANLRFNV 156 (456)
Q Consensus 130 ~i~v~~~---DrpGLL~~I~~~l~~~gi~I 156 (456)
.|.+.|. +.||+++++.++|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4667765 67999999999999887666
No 304
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=53.58 E-value=2.2e+02 Score=29.60 Aligned_cols=69 Identities=10% Similarity=0.032 Sum_probs=47.0
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEe-ecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVS-TVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~-T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
+...+.+.-+||||=|.++.+.+...+-||...+-. ..+.....++..-...+ +++.+++.++|.+...
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~----~~h~~~i~~~L~~~Gy 393 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND----KEDFAGLLERMAAADI 393 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC----HHHHHHHHHHHHHCCC
Confidence 456799999999999999999666676699866654 33333333433323322 4677888888877654
No 305
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=52.77 E-value=75 Score=24.21 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=26.1
Q ss_pred EEEEEe---eCchhHHHHHHHHHHhCCcEEEEEEEE
Q 012814 270 VVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAIS 302 (456)
Q Consensus 270 ~v~V~~---~Dr~gll~~i~~~L~~~~l~I~~a~i~ 302 (456)
.|++.| .+.+|+++++..+|++.++++.-....
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 456643 478899999999999999999765543
No 306
>PRK00907 hypothetical protein; Provisional
Probab=52.65 E-value=83 Score=25.66 Aligned_cols=64 Identities=11% Similarity=0.222 Sum_probs=45.7
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec----CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT----HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T----~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
-.+.+.|.|.++++|...|..++..+........+.. .|....-.+.+.-. +.++++.|-++|.
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at-------s~eQld~iY~~L~ 83 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE-------SREQYDAAHQALR 83 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 3589999999999999999999999988766666533 44445555555542 2466666665554
No 307
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=52.31 E-value=17 Score=39.19 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=33.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN 165 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~ 165 (456)
.++|.|.||.|+..+|...|..+++|+....|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 478999999999999999999999999999997653
No 308
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.39 E-value=90 Score=22.52 Aligned_cols=32 Identities=6% Similarity=-0.018 Sum_probs=26.0
Q ss_pred EEEEEee---CchhHHHHHHHHHHhCCcEEEEEEE
Q 012814 270 VVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAI 301 (456)
Q Consensus 270 ~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i 301 (456)
.|.+.|. +++|+.+++...|++.|+++.-...
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4566654 7899999999999999999976544
No 309
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=50.44 E-value=61 Score=28.28 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=44.5
Q ss_pred EEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEE
Q 012814 26 SVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVI 82 (456)
Q Consensus 26 ~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~ 82 (456)
-+.+-..+.-..+.+.-.||.|.|+++-.++++.++||+.-...- .+|.+--+..+.
T Consensus 63 pf~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~ 120 (150)
T COG4492 63 PFYDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSID 120 (150)
T ss_pred ehhhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEE
Confidence 344444456678889999999999999999999999999888875 577765455443
No 310
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=50.13 E-value=72 Score=27.88 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=46.7
Q ss_pred HHHHHHhCCcEEEEEEEEecCCc-eEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeCCCcchHH
Q 012814 285 IVCTLTDMQYVVFHAAISSDGPH-ASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR--RVSEGLSLELCAKDRVGLLS 361 (456)
Q Consensus 285 i~~~L~~~~l~I~~a~i~t~~g~-~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--r~~~~~~lev~~~DrpGlL~ 361 (456)
+...+..+|+.+.+.++...++. .+.+| +. .++. + +-+.++++-+.+.+.|.. ..+..|.|||+++.--.-|.
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~-id-~~~g-v-~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~ 77 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVF-ID-KDGG-V-SLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLK 77 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEE-EE--SS-----HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--S
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEE-EE-eCCC-C-CHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCC
Confidence 45678899999999999998764 55443 43 3443 2 335777777777776654 34678999999875444454
Q ss_pred HHHHHHHHCCc
Q 012814 362 EVTRILRENGL 372 (456)
Q Consensus 362 ~It~~l~~~gi 372 (456)
..-+.-.-.|-
T Consensus 78 ~~~~~~~~iG~ 88 (141)
T PF02576_consen 78 SPRDFERFIGR 88 (141)
T ss_dssp SHHHHHHH-SE
T ss_pred CHHHHHHhcCC
Confidence 44444444443
No 311
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=50.06 E-value=98 Score=37.89 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=66.3
Q ss_pred CCEEEEEec--CCCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec---CC--ceEEEEEEEccCCCCCCCHHH
Q 012814 255 KPEITVERL--EDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD---GP--HASQEYYIRHMDGCILDTEGE 327 (456)
Q Consensus 255 ~~~v~v~n~--~~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~---~g--~~~d~f~V~~~~g~~~~~~~~ 327 (456)
+..+.+... ..++.+.+.++.+.++..|.+++-+|..+|+.|.+.+-+.. +| ..+..|.+..+.+...+....
T Consensus 474 ~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~ 553 (1528)
T PF05088_consen 474 PLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDI 553 (1528)
T ss_pred CceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHH
Confidence 344444433 34467899999999999999999999999999999987763 22 567789998888877666677
Q ss_pred HHHHHHHHHHHHh
Q 012814 328 KERVIKCLEAAIR 340 (456)
Q Consensus 328 ~~~l~~~L~~~l~ 340 (456)
.+.+++++.+...
T Consensus 554 ~~~~~~a~~~v~~ 566 (1528)
T PF05088_consen 554 RERFEEAFEAVWN 566 (1528)
T ss_pred HHHHHHHHHHHhc
Confidence 7888888876643
No 312
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=50.04 E-value=1.3e+02 Score=31.29 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=45.8
Q ss_pred CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEe-cCC-ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW-THN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~-T~~-~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
.+.....+.+.-+||||-|.+++..+...+.||...+-. ..+ +.+.-.+-+..+ +++..+++.++|.+
T Consensus 321 ~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~-------~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 321 YEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELN-------DKEDFAGLLERMAA 390 (409)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 356788999999999999999999777777799977755 233 223222333331 24566777766653
No 313
>PRK14635 hypothetical protein; Provisional
Probab=46.84 E-value=1.9e+02 Score=26.04 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=62.3
Q ss_pred eCchhHHHHHHHHHHhCCcEEEEEEEEecCCc-eEEEEEEEc---cCCCCCCCHHHHHHHHHHHHHHHhhc-CCCceEEE
Q 012814 276 RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH-ASQEYYIRH---MDGCILDTEGEKERVIKCLEAAIRRR-VSEGLSLE 350 (456)
Q Consensus 276 ~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~-~~d~f~V~~---~~g~~~~~~~~~~~l~~~L~~~l~~r-~~~~~~le 350 (456)
++..-+-.-+...+. .|+.+.+..+...++. .+- .++.. .+|. .+-+.++.+.+.+.+.|... ....|.||
T Consensus 3 ~~~~~i~~l~~~~~~-~g~el~dve~~~~~~~~~lr-V~ID~~~~~~~g--v~lddC~~vSr~is~~LD~~d~~~~Y~LE 78 (162)
T PRK14635 3 VSEEEISEILDRVLA-LPVKLYSLKVNQRPNHSLIE-VVLDNLEHPYGS--VSLLECEQVSRKLKEELERISPDLDFTLK 78 (162)
T ss_pred CcHHHHHHHHHHHHC-CCCEEEEEEEEecCCCcEEE-EEEecCCCCCCC--cCHHHHHHHHHHHHHHhCCCCCCCCeEEE
Confidence 344445555566664 6999999999987654 443 44432 1232 13367888888888888642 23689999
Q ss_pred EEeCCCcchHHHHHHHHHHCCceEE
Q 012814 351 LCAKDRVGLLSEVTRILRENGLSVT 375 (456)
Q Consensus 351 v~~~DrpGlL~~It~~l~~~gi~I~ 375 (456)
|+++.=-.-|..--..-+-.|-.+.
T Consensus 79 VSSPGldRpL~~~~~~~r~~G~~v~ 103 (162)
T PRK14635 79 VSSAGAERKLRLPEDLDRFRGIPVR 103 (162)
T ss_pred EcCCCCCCcCCCHHHHHHhCCCEEE
Confidence 9988555556666666666666553
No 314
>PRK08841 aspartate kinase; Validated
Probab=46.62 E-value=3.6e+02 Score=28.01 Aligned_cols=113 Identities=10% Similarity=0.150 Sum_probs=65.9
Q ss_pred chHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCcccccccCCC
Q 012814 47 GILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVG 126 (456)
Q Consensus 47 GLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~~~~~~~~v~~~~~~ 126 (456)
+.++++.+.|+.+|+++.-- ++....+ .|.|.. .....++..+.+. .....
T Consensus 266 ~~~~~i~~~l~~~~i~v~~i--~~~~~~~--~~~v~~---------~~~~~~~~~~~~~----------------i~~~~ 316 (392)
T PRK08841 266 ESLPSLTKQCQMLGIEVWNV--IEEADRA--QIVIKQ---------DACAKLKLVFDDK----------------IRNSE 316 (392)
T ss_pred chHHHHHHHHHHcCCCEEEE--EecCCcE--EEEECH---------HHHHHHHHhCccc----------------EEEeC
Confidence 35789999999999888733 2222111 244421 1122232222111 01124
Q ss_pred ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814 127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG 202 (456)
Q Consensus 127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~ 202 (456)
+...+.+.|...||+.+++..+|.+.|+||..... ++ ..-.|.|.. +...+.-+.|++.+..
T Consensus 317 ~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~---s~-~~is~vv~~----------~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 317 SVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCST---EP-QSSMLVLDP----------ANVDRAANILHKTYVT 378 (392)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEEC---CC-cEEEEEEeH----------HHHHHHHHHHHHHHcC
Confidence 57789999999999999999999999999955442 22 333344433 3345555566665543
No 315
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=46.57 E-value=58 Score=24.37 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=30.0
Q ss_pred EEEEEeC--CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeE-EEEE
Q 012814 348 SLELCAK--DRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNV-FYVR 393 (456)
Q Consensus 348 ~lev~~~--DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~-F~v~ 393 (456)
.|.+.|. -+||++.++.++|.+.|+++..... |...... |.|.
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~---~~s~~~is~~V~ 49 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQ---SMRNVDVQFVVD 49 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEe---cCCeeEEEEEEE
Confidence 3455553 3689999999999999999987654 4444444 5553
No 316
>PRK08639 threonine dehydratase; Validated
Probab=46.27 E-value=3.1e+02 Score=28.64 Aligned_cols=70 Identities=11% Similarity=-0.019 Sum_probs=46.3
Q ss_pred CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEee-cCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 344 SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVST-VGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 344 ~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T-~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
.+...+.+.-+||||-|.++.+.+...+-||...+=.. .+.....++..-...+ +++.+++.++|.+...
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~----~~h~~~i~~~L~~~Gy 404 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD----AEDYDGLIERMEAFGP 404 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC----HHHHHHHHHHHHHCCC
Confidence 35677999999999999999996666555988776442 2322223332222222 3677889998888655
No 317
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=46.01 E-value=45 Score=23.77 Aligned_cols=30 Identities=13% Similarity=0.376 Sum_probs=25.2
Q ss_pred EEEEe---CCCcchHHHHHHHHHHCCceEEEEE
Q 012814 349 LELCA---KDRVGLLSEVTRILRENGLSVTRAG 378 (456)
Q Consensus 349 lev~~---~DrpGlL~~It~~l~~~gi~I~~a~ 378 (456)
|.+.+ .+.||++.++...|.+.|+++....
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 55554 4779999999999999999997775
No 318
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=45.90 E-value=59 Score=34.42 Aligned_cols=52 Identities=15% Similarity=0.059 Sum_probs=41.4
Q ss_pred CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeE-EEEEEEe
Q 012814 125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIA-CVLYVND 176 (456)
Q Consensus 125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~-d~F~v~~ 176 (456)
....+.|-+...|+||-|+++-..|+.+|+|+......... .... -.|+|.-
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 34567777778999999999999999999999998876643 3344 5788876
No 319
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.15 E-value=1.2e+02 Score=23.82 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=28.7
Q ss_pred eCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814 135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND 176 (456)
Q Consensus 135 ~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~ 176 (456)
..+.||++++|..+|+++|+||.-... ++ ..-.|.+..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~q---s~-~sISftV~~ 48 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVAT---SE-VSISLTLDP 48 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe---cC-CEEEEEEEh
Confidence 458899999999999999999998743 22 334455544
No 320
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=44.33 E-value=1.1e+02 Score=23.44 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=35.0
Q ss_pred CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 137 DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
-.||++++|.+.|+++|+||.-... ++ ..-.|.+.. . .+. .+.++.|.+.|.+
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~---~-~~~-~~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM---E-NAE-DTNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh---h-hcC-hHHHHHHHHHHHH
Confidence 5699999999999999999998753 22 333444443 1 221 1256677766665
No 321
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=44.00 E-value=2.4e+02 Score=25.32 Aligned_cols=30 Identities=7% Similarity=0.273 Sum_probs=26.7
Q ss_pred EEEEEEeeCchhHHHHHHHHHHhCCcEEEE
Q 012814 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFH 298 (456)
Q Consensus 269 ~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~ 298 (456)
..+.|.-+|+||-+..+.+=|+..|.||..
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiIt 35 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIIT 35 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEE
Confidence 356788999999999999999999999874
No 322
>PRK08639 threonine dehydratase; Validated
Probab=43.78 E-value=1.4e+02 Score=31.13 Aligned_cols=68 Identities=19% Similarity=0.159 Sum_probs=44.6
Q ss_pred CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEE-EEeCCCCCcCCChHHHHHHHHHHHH
Q 012814 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLY-VNDDTTCRAVGDQTRLSLMEEQLKN 198 (456)
Q Consensus 124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~-v~~~~~g~~l~d~~~~~~l~~~L~~ 198 (456)
.+.....+.+.-+||||-|.++...+...+-||...+-.. .+.....++. +..+ +++..+++.+.|.+
T Consensus 332 ~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~-------~~~h~~~i~~~L~~ 401 (420)
T PRK08639 332 YEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELK-------DAEDYDGLIERMEA 401 (420)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 4567889999999999999999997777666999876542 2222222222 2221 24566777776653
No 323
>PRK14644 hypothetical protein; Provisional
Probab=40.84 E-value=2.5e+02 Score=24.60 Aligned_cols=76 Identities=12% Similarity=0.021 Sum_probs=52.3
Q ss_pred HHHHhCCcEEEEEEEEecCC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeC--CCcchHH
Q 012814 287 CTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR--RVSEGLSLELCAK--DRVGLLS 361 (456)
Q Consensus 287 ~~L~~~~l~I~~a~i~t~~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--r~~~~~~lev~~~--DrpGlL~ 361 (456)
.++..+|+.+.+..+...++ +++-+| + +.. +-+.++.+-+.|.+.|.. ..+..|.+||+.+ ||| |.
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~-I-dk~-----~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRp--L~ 76 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVI-L-NSR-----DLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMD--YE 76 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEE-E-CCC-----CHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCC--CC
Confidence 46789999999999998755 555443 4 322 236788888888888853 3567899999977 788 33
Q ss_pred HHHHHHHHCCc
Q 012814 362 EVTRILRENGL 372 (456)
Q Consensus 362 ~It~~l~~~gi 372 (456)
. ...-+-.|=
T Consensus 77 ~-~~f~r~~G~ 86 (136)
T PRK14644 77 T-DELENHIGE 86 (136)
T ss_pred H-HHHHHhCCC
Confidence 3 354444443
No 324
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=40.12 E-value=4.4e+02 Score=28.32 Aligned_cols=67 Identities=9% Similarity=0.130 Sum_probs=47.6
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814 345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML 417 (456)
Q Consensus 345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~ 417 (456)
+...+.|.-+||||-|.+++++|... ||...+=...+.....+|..-... +++++++|.++|.+...
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~----~~~~~~~l~~~L~~~Gy 390 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLS----NPQERQEILARLNDGGY 390 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeC----CHHHHHHHHHHHHHcCC
Confidence 45678999999999999999999984 666655443443444456443332 24678899999988665
No 325
>PRK00907 hypothetical protein; Provisional
Probab=39.81 E-value=1e+02 Score=25.15 Aligned_cols=63 Identities=11% Similarity=0.042 Sum_probs=45.4
Q ss_pred EEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEe---cCC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 012814 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS---DGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEA 337 (456)
Q Consensus 269 ~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t---~~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 337 (456)
+-+.|.|.+++++...|..++..+.-......+.. .+| |..-++.|. .+..++++.|-++|.+
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~------ats~eQld~iY~~L~~ 84 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFR------AESREQYDAAHQALRD 84 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEE------ECCHHHHHHHHHHHhh
Confidence 67899999999999999999999887766666643 234 444444443 3455778888777754
No 326
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=37.65 E-value=50 Score=28.23 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=33.3
Q ss_pred CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814 354 KDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM 416 (456)
Q Consensus 354 ~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~ 416 (456)
=|-+|+|+.|.+.|++.||.|+-. +|+.. |-.+|. .+.+++-+++|.++.
T Consensus 74 FgltGilasV~~pLsd~gigIFav--Stydt---DhiLVr--------~~dLekAv~~L~eaG 123 (128)
T COG3603 74 FGLTGILASVSQPLSDNGIGIFAV--STYDT---DHILVR--------EEDLEKAVKALEEAG 123 (128)
T ss_pred CCcchhhhhhhhhHhhCCccEEEE--EeccC---ceEEEe--------hhhHHHHHHHHHHcC
Confidence 478999999999999999999764 44432 223332 234555566666553
No 327
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=37.56 E-value=1.1e+02 Score=26.21 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=31.1
Q ss_pred CCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEe
Q 012814 124 SVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVW 162 (456)
Q Consensus 124 ~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~ 162 (456)
.+.....+.+.++ |-+|+|+.|.+.|+++|+.|.-...+
T Consensus 59 ~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavSty 100 (128)
T COG3603 59 IEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTY 100 (128)
T ss_pred ecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEec
Confidence 4456777777765 89999999999999999998765533
No 328
>PRK14641 hypothetical protein; Provisional
Probab=36.99 E-value=3.3e+02 Score=24.89 Aligned_cols=81 Identities=7% Similarity=0.029 Sum_probs=54.5
Q ss_pred HhCCcEEEEEEEEecC-CceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhc--C----CCceEEEEEeCCCcchHHH
Q 012814 290 TDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--V----SEGLSLELCAKDRVGLLSE 362 (456)
Q Consensus 290 ~~~~l~I~~a~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r--~----~~~~~lev~~~DrpGlL~~ 362 (456)
..+|+.+.+..+...+ ++.+- .++ +.+|. .+-+.++.+-+.|.+.|... . ...|.|||+++.--.-|..
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lr-V~I-D~~~g--v~lDdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldRpL~~ 95 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIE-VLL-DADTG--IRIDQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGEPIIL 95 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEE-EEE-eCCCC--CCHHHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCCcCCC
Confidence 4899999999998875 45554 444 44433 23467888888888888642 2 2589999998855555666
Q ss_pred HHHHHHHCCceE
Q 012814 363 VTRILRENGLSV 374 (456)
Q Consensus 363 It~~l~~~gi~I 374 (456)
.-..-+-.|=.|
T Consensus 96 ~~~f~r~~G~~V 107 (173)
T PRK14641 96 PRQYGRHVGRLL 107 (173)
T ss_pred HHHHHHhCCCEE
Confidence 656555555443
No 329
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=36.25 E-value=88 Score=23.49 Aligned_cols=32 Identities=3% Similarity=0.229 Sum_probs=23.5
Q ss_pred HHHHhhCCceEEEEEEEEeCCEEEEEEEEEeC
Q 012814 53 VQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ 84 (456)
Q Consensus 53 ~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~ 84 (456)
...+..+|..+..=.+.|.||+.+..+.+...
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~ 33 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPG 33 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SB
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCC
Confidence 45678899999999999999999999999754
No 330
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.13 E-value=2e+02 Score=21.13 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=22.0
Q ss_pred EEEEEee---CchhHHHHHHHHHHhCCcEE
Q 012814 270 VVNVKCR---DRAKLMFDIVCTLTDMQYVV 296 (456)
Q Consensus 270 ~v~V~~~---Dr~gll~~i~~~L~~~~l~I 296 (456)
.|.+.|. +.+|+++++.++|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 3566764 67999999999999987766
No 331
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=33.11 E-value=3.4e+02 Score=27.26 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=30.0
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV 382 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~ 382 (456)
+.|--.-.+-||.|.++-.+|+-+.|++.+......
T Consensus 282 tsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~ 317 (377)
T KOG2797|consen 282 TSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPF 317 (377)
T ss_pred eeEEEEeecCCchHHHHHHHHHhhhceeeeeecccc
Confidence 344444689999999999999999999999887764
No 332
>PRK14631 hypothetical protein; Provisional
Probab=32.74 E-value=3.9e+02 Score=24.44 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhCCcEEEEEEEEecCC-ceEEEEEEEcc----------------CCCCCCCHHHHHHHHHHHHHHHhh-
Q 012814 280 KLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHM----------------DGCILDTEGEKERVIKCLEAAIRR- 341 (456)
Q Consensus 280 gll~~i~~~L~~~~l~I~~a~i~t~~g-~~~d~f~V~~~----------------~g~~~~~~~~~~~l~~~L~~~l~~- 341 (456)
.+-..+..+++.+|+.+.+..+...++ +.+-+| +..+ .+.- ..-+.++.+-+.|.+.|..
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~-ID~~~~~~~~~~~~~~~~~~~~~g-vtiddC~~vSr~is~~LD~~ 86 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIY-IDRLVEENAEPVINEDGEVEQGRG-IGVEDCVRVTQQVGAMLDVH 86 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEE-EecCcccccccccccccccccCCC-cCHHHHHHHHHHHHHHhccc
Confidence 455677788999999999999998754 455444 4322 0111 2336788888888888853
Q ss_pred -cCCCceEEEEEeCCCcchHHHHHHHHHHCCceE
Q 012814 342 -RVSEGLSLELCAKDRVGLLSEVTRILRENGLSV 374 (456)
Q Consensus 342 -r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~I 374 (456)
..+..|.|||+++.--.-|.....+-.-.|-.|
T Consensus 87 d~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V 120 (174)
T PRK14631 87 DPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQV 120 (174)
T ss_pred ccCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeE
Confidence 356789999999866566777777777766544
No 333
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=31.90 E-value=76 Score=23.81 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=25.6
Q ss_pred EEEEEeC-CcccHHHHHHHHHHhCCceEEEEEE
Q 012814 130 AIELIGR-DRPGLLSEISAVLANLRFNVAAAEV 161 (456)
Q Consensus 130 ~i~v~~~-DrpGLL~~I~~~l~~~gi~I~~a~i 161 (456)
.++|.+. +.||.+++|.+.|+++|+||.-...
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~ 35 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINV 35 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEe
Confidence 3445543 5699999999999999999998833
No 334
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=31.25 E-value=1.1e+02 Score=22.99 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.5
Q ss_pred EEEEeC-CCcchHHHHHHHHHHCCceEEEE
Q 012814 349 LELCAK-DRVGLLSEVTRILRENGLSVTRA 377 (456)
Q Consensus 349 lev~~~-DrpGlL~~It~~l~~~gi~I~~a 377 (456)
|.|.+. +.||.+++|...|+++|++|...
T Consensus 4 vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 4 IKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 444444 56999999999999999999998
No 335
>PLN02828 formyltetrahydrofolate deformylase
Probab=30.25 E-value=3.9e+02 Score=26.27 Aligned_cols=31 Identities=10% Similarity=-0.019 Sum_probs=23.9
Q ss_pred HHHHHhhCCceEEEEEEEEe--CCEEEEEEEEE
Q 012814 52 VVQVLSDLDLIITKAYISSD--GGWFMDVFHVI 82 (456)
Q Consensus 52 i~~vL~~~glnI~~A~i~t~--~g~~~d~f~V~ 82 (456)
+++.|+++|+||.+++.+++ .|+++....+.
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~ 33 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFI 33 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEE
Confidence 47899999999999999984 46666554443
No 336
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.81 E-value=2.2e+02 Score=20.65 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCC
Q 012814 129 TAIELIGR---DRPGLLSEISAVLANLR 153 (456)
Q Consensus 129 t~i~v~~~---DrpGLL~~I~~~l~~~g 153 (456)
..+.+.|. ++||+++++..+|.+.+
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~i~ 29 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALEDIN 29 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHhCC
Confidence 35677776 78999999999997633
No 337
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=29.78 E-value=1e+02 Score=37.05 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=39.5
Q ss_pred CCCEEEEecCCCCC--eEEEEEEecCCcchHHHHHHHHhhCCceEEEE
Q 012814 21 NPPRASVDNSSCPE--CTVVKVDSVNKPGILLEVVQVLSDLDLIITKA 66 (456)
Q Consensus 21 ~~p~V~v~~~~~~~--~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A 66 (456)
++|.|.+.+...+. ++.|+|..+|.|-|+--|.+.|..+|+.++-.
T Consensus 72 ~~~~V~v~~~v~~~g~~~~l~Iv~~~~pfl~Dsv~~~l~~~~~~~~~~ 119 (1592)
T COG2902 72 GAPCVRVYPGVAEHGPVTALQIVLDNMPFLVDSVMGELTRLGLQIHLL 119 (1592)
T ss_pred CCceEEecCCcccCCCceeEEEEcCCCCeeehhHHHHHHhcccceEEE
Confidence 78999988655444 48999999999999999999999999998744
No 338
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=29.68 E-value=1.4e+02 Score=22.40 Aligned_cols=33 Identities=6% Similarity=-0.089 Sum_probs=24.2
Q ss_pred HHHHHhCCcEEEEEEEEecCCceEEEEEEEccC
Q 012814 286 VCTLTDMQYVVFHAAISSDGPHASQEYYIRHMD 318 (456)
Q Consensus 286 ~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~ 318 (456)
......+|+.+..=.+.|.||+.+..+.+....
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 456788999999999999999999999996655
No 339
>PRK02047 hypothetical protein; Provisional
Probab=29.65 E-value=2.8e+02 Score=22.39 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=45.3
Q ss_pred eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec---CC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 012814 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD---GP-HASQEYYIRHMDGCILDTEGEKERVIKCLEA 337 (456)
Q Consensus 268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~---~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 337 (456)
.+.+.|.|++.+++...+..++..+...+..+.+.+. +| |..-+..+. +++++++..|-++|.+
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~------v~s~eq~~~iY~~L~~ 83 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVR------ATSREQLDNIYRALTG 83 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEE------ECCHHHHHHHHHHHhh
Confidence 3678999999999999999999999777766666543 34 444334442 3455677777777654
No 340
>PRK02047 hypothetical protein; Provisional
Probab=29.05 E-value=3.1e+02 Score=22.14 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=44.9
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec----CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT----HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T----~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
|..+.+.|.+.+.+++...|..++..+...+..+.+.+ .|....-.+.++-. +.+++..|-++|.
T Consensus 14 Pc~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~-------s~eq~~~iY~~L~ 82 (91)
T PRK02047 14 PSDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRAT-------SREQLDNIYRALT 82 (91)
T ss_pred CCCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 34689999999999999999999999988776666644 44444444444442 2456566655443
No 341
>PRK02001 hypothetical protein; Validated
Probab=27.29 E-value=4.5e+02 Score=23.45 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=52.7
Q ss_pred HHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCcchHHHHHH
Q 012814 286 VCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTR 365 (456)
Q Consensus 286 ~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r~~~~~~lev~~~DrpGlL~~It~ 365 (456)
..++..+|+.+.+..+... ..+- .++ +.+|. + +-+.++.+-++|.+.|... +..|.|||+++.--.-|..--.
T Consensus 12 e~~~~~~g~eLvdv~~~~~--~~lr-V~I-D~~~G-v-~lddC~~vSr~is~~LD~~-d~~Y~LEVSSPGldRpL~~~~~ 84 (152)
T PRK02001 12 EELLEGPELFLVDLTISPD--NKIV-VEI-DGDEG-V-WIEDCVELSRAIEHNLDRE-EEDFELEVGSAGLTSPLKVPRQ 84 (152)
T ss_pred HhhhhhcCcEEEEEEEEcC--CEEE-EEE-ECCCC-C-CHHHHHHHHHHHHHHhcCC-CCCeEEEEeCCCCCCcCCCHHH
Confidence 3466789999999998753 2343 334 43332 2 3467889988888888633 4788999998844444555555
Q ss_pred HHHHCCceE
Q 012814 366 ILRENGLSV 374 (456)
Q Consensus 366 ~l~~~gi~I 374 (456)
.-.-.|-.|
T Consensus 85 f~r~~G~~v 93 (152)
T PRK02001 85 YKKNIGREL 93 (152)
T ss_pred HHHhCCCEE
Confidence 555555433
No 342
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=26.26 E-value=1.5e+02 Score=30.60 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=30.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 012814 130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVW 162 (456)
Q Consensus 130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~ 162 (456)
.|+|.|.||-||..++-..|...++|+....|.
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid 34 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID 34 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec
Confidence 478999999999999999999999999998883
No 343
>PRK05925 aspartate kinase; Provisional
Probab=25.43 E-value=7e+02 Score=26.31 Aligned_cols=103 Identities=12% Similarity=-0.010 Sum_probs=0.0
Q ss_pred CCeEEEEEEeeC-chhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh-hcC
Q 012814 266 KGYSVVNVKCRD-RAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR-RRV 343 (456)
Q Consensus 266 ~~~~~v~V~~~D-r~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~-~r~ 343 (456)
++.+.|++.+.. .+|.+.++.+.|+++|++|.-. .+...... |.+...+-.. ..++.|...+.+.-. .-.
T Consensus 298 ~~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i--~s~~~sis--~~i~~~~~~~----~~~~~l~~~l~~~~~i~~~ 369 (440)
T PRK05925 298 QNQALWSVDYNSLGLVRLEDVLGILRSLGIVPGLV--MAQNLGVY--FTIDDDDISE----EYPQHLTDALSAFGTVSCE 369 (440)
T ss_pred CCEEEEEEecCCcchhHHHHHHHHHHHcCCcEEEE--eccCCEEE--EEEechhccH----HHHHHHHHHhcCCceEEEE
Q ss_pred CCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEE
Q 012814 344 SEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRA 377 (456)
Q Consensus 344 ~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a 377 (456)
.+-..|.|.|. . +|+..++..+|.+.|++|...
T Consensus 370 ~~~a~VsvVG~gm~~-~~v~~~~~~aL~~~~Ini~~i 405 (440)
T PRK05925 370 GPLALITMIGAKLAS-WKVVRTFTEKLRGYQTPVFCW 405 (440)
T ss_pred CCEEEEEEeCCCccc-ccHHHHHHHHHhhCCCCEEEE
No 344
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=24.44 E-value=4.5e+02 Score=23.64 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=47.4
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec---Cce--eeeEEEEEeCCCCCCChHHHHHHHHHHHHhhhhccc
Q 012814 347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV---GEQ--AVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNVK 421 (456)
Q Consensus 347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~---g~~--~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~~~~~ 421 (456)
..++|.-.|+||=|-.+-+-|+..|.||-..-=+.. |.+ +.=+|-..+. ...+++-+++.+... .+.
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~-------~~~~~i~~~~e~~Gi-~I~ 77 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDRE-------DKDAKIIRLLEEEGI-III 77 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEeccc-------HHHHHHHHHHHhCCc-EEE
Confidence 458888999999999999999999999877654433 554 4545544211 223444444455444 444
Q ss_pred cCCCCCCC
Q 012814 422 KVPASRSA 429 (456)
Q Consensus 422 ~~~~~~~~ 429 (456)
+--+++.+
T Consensus 78 ~~dg~~~~ 85 (170)
T COG2061 78 RFDGARLR 85 (170)
T ss_pred EecCcCcc
Confidence 44444443
No 345
>PRK00341 hypothetical protein; Provisional
Probab=23.60 E-value=3.2e+02 Score=22.06 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=43.4
Q ss_pred EEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec---CC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 012814 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD---GP-HASQEYYIRHMDGCILDTEGEKERVIKCLEA 337 (456)
Q Consensus 269 ~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~---~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~ 337 (456)
+.+.|.|.+.+++...|..++..+. ......+.+. +| |..-.+.+. ..+++.+..|-++|.+
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~------~~s~~q~~~iy~~L~~ 83 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIV------ATDEDQLQDINSALRA 83 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEE------ECCHHHHHHHHHHHhh
Confidence 6689999999999999999998876 7666666532 44 444334442 2445677777777754
No 346
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=23.22 E-value=3.3e+02 Score=21.62 Aligned_cols=51 Identities=8% Similarity=-0.117 Sum_probs=36.0
Q ss_pred CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcC
Q 012814 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAV 183 (456)
Q Consensus 126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l 183 (456)
.....+.+...| +....+.|.+.|+++........++. ..|++.|| +|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DP-dG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADP-EGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECC-CCCEE
Confidence 346667777777 67777888999999987654333222 47999996 77654
No 347
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=23.20 E-value=5.6e+02 Score=30.12 Aligned_cols=79 Identities=9% Similarity=-0.020 Sum_probs=53.5
Q ss_pred CCEEEEEecC-CCCeEEEEE---EeeCchhHHHHHHHHHHhCCcEEEEEEEEec-CCceEEEEEEEccCCCCCCCHHHHH
Q 012814 255 KPEITVERLE-DKGYSVVNV---KCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTEGEKE 329 (456)
Q Consensus 255 ~~~v~v~n~~-~~~~~~v~V---~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~ 329 (456)
.|.+.+.... +.....+.+ .-+...|+|..++..+..+|+.+..+.+-+. +|..+-.|||+...+....+....+
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~~~ 295 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSIED 295 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcccccHHH
Confidence 3556554433 222223344 4567789999999999999999999999885 7877778999877665333333444
Q ss_pred HHHH
Q 012814 330 RVIK 333 (456)
Q Consensus 330 ~l~~ 333 (456)
.++.
T Consensus 296 ~~~~ 299 (1002)
T PTZ00324 296 RASL 299 (1002)
T ss_pred HHHh
Confidence 4444
No 348
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=23.09 E-value=2.9e+02 Score=21.94 Aligned_cols=51 Identities=10% Similarity=-0.042 Sum_probs=36.6
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCC
Q 012814 33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKI 89 (456)
Q Consensus 33 ~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~ 89 (456)
.....+.+.+.| +..+...|.++|++|...-....++. ..|++.||+|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 455677788888 67777888999999986654333232 3689999999753
No 349
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=22.32 E-value=3.3e+02 Score=20.14 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=26.4
Q ss_pred EEEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEe
Q 012814 129 TAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVW 162 (456)
Q Consensus 129 t~i~v~~~--DrpGLL~~I~~~l~~~gi~I~~a~i~ 162 (456)
..|.+.|. .+||+++++..+|.+.|+++......
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~ 38 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS 38 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec
Confidence 35666654 36899999999999999999765543
No 350
>PRK14633 hypothetical protein; Provisional
Probab=22.16 E-value=5.6e+02 Score=22.71 Aligned_cols=88 Identities=16% Similarity=0.256 Sum_probs=50.4
Q ss_pred hHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCcccccccCCCc
Q 012814 48 ILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGD 127 (456)
Q Consensus 48 Ll~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~~~~~~~~v~~~~~~~ 127 (456)
+-..+..++..+|+.+.+..+...+++.+-+| +..+.|-.+ +.++.+-+++...++.. ++-+.
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~lrV~-ID~~~Gv~l---ddC~~vSr~i~~~LD~~-------------d~i~~ 68 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTIRIF-IDHENGVSV---DDCQIVSKEISAVFDVE-------------DPVSG 68 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EeCCCCCCH---HHHHHHHHHHHHHhccC-------------cCCCC
Confidence 34567788999999999999987666655433 333444322 35555555555543321 11234
Q ss_pred eEEEEEEeC--CcccHHHHHHHHHHhCCc
Q 012814 128 HTAIELIGR--DRPGLLSEISAVLANLRF 154 (456)
Q Consensus 128 ~t~i~v~~~--DrpGLL~~I~~~l~~~gi 154 (456)
.|.++|.++ ||| |......-.-.|-
T Consensus 69 ~Y~LEVSSPGldRp--L~~~~~f~r~~G~ 95 (150)
T PRK14633 69 KYILEVSSPGMNRQ--IFNIIQAQALVGF 95 (150)
T ss_pred CeEEEEeCCCCCCC--CCCHHHHHHhCCC
Confidence 677888755 444 4444444444343
No 351
>PRK00341 hypothetical protein; Provisional
Probab=21.68 E-value=4.4e+02 Score=21.30 Aligned_cols=62 Identities=16% Similarity=0.264 Sum_probs=41.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec----CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814 128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT----HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK 197 (456)
Q Consensus 128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T----~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~ 197 (456)
.+.+.|.|.+.+++...|..++..+. .+....+.+ .|....-.+.+.-. +.+++..+-++|.
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~-------s~~q~~~iy~~L~ 82 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT-------DEDQLQDINSALR 82 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 48899999999999999999999887 776665543 33334444444442 2455555555443
No 352
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.72 E-value=3.4e+02 Score=21.26 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=34.7
Q ss_pred CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814 355 DRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT 415 (456)
Q Consensus 355 DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~ 415 (456)
...|++..+-++|.++|++++..= ...|.|-|.-. ...++++..+++.++|...
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~P------SGID~~Siii~-~~~~~~~~~~~i~~~i~~~ 66 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMP------SGIDDISIIIR-DNQLTDEKEQKILAEIKEE 66 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeec------CCCccEEEEEE-ccccchhhHHHHHHHHHHh
Confidence 456999999999999999998753 23454544322 3344443445555555554
Done!