Query 012815
Match_columns 456
No_of_seqs 215 out of 1706
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 06:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11320 prpB 2-methylisocitra 100.0 1.7E-73 3.7E-78 568.5 34.6 286 75-364 3-291 (292)
2 TIGR02317 prpB methylisocitrat 100.0 1.6E-73 3.5E-78 567.1 33.7 281 78-363 2-284 (285)
3 COG2513 PrpB PEP phosphonomuta 100.0 9.9E-74 2.1E-78 563.8 29.5 282 76-362 5-288 (289)
4 TIGR02319 CPEP_Pphonmut carbox 100.0 5.5E-73 1.2E-77 565.2 34.2 286 76-365 3-293 (294)
5 TIGR02321 Pphn_pyruv_hyd phosp 100.0 4.3E-70 9.2E-75 543.9 33.7 282 76-363 2-290 (290)
6 PRK15063 isocitrate lyase; Pro 100.0 2.8E-69 6E-74 557.0 31.1 316 40-368 4-394 (428)
7 TIGR02320 PEP_mutase phosphoen 100.0 1.8E-62 3.9E-67 488.2 31.8 265 81-353 1-285 (285)
8 PF13714 PEP_mutase: Phosphoen 100.0 1.3E-62 2.9E-67 478.1 27.5 235 81-329 1-238 (238)
9 cd00377 ICL_PEPM Members of th 100.0 6.7E-59 1.5E-63 452.5 29.3 240 81-326 1-242 (243)
10 TIGR01346 isocit_lyase isocitr 100.0 9.8E-48 2.1E-52 403.4 26.1 276 47-330 3-468 (527)
11 COG2224 AceA Isocitrate lyase 100.0 3.3E-47 7.1E-52 387.0 21.7 311 43-367 7-399 (433)
12 KOG1260 Isocitrate lyase [Ener 100.0 6.2E-48 1.3E-52 394.9 12.9 368 46-418 9-474 (492)
13 PLN02892 isocitrate lyase 100.0 7.5E-45 1.6E-49 383.4 26.2 285 44-330 21-490 (570)
14 PF00463 ICL: Isocitrate lyase 100.0 3.1E-43 6.8E-48 368.4 23.6 278 45-330 2-467 (526)
15 cd06556 ICL_KPHMT Members of t 100.0 1.8E-40 3.9E-45 323.4 22.8 180 80-285 3-199 (240)
16 PRK06498 isocitrate lyase; Pro 100.0 9.2E-40 2E-44 339.6 25.0 280 49-328 14-469 (531)
17 cd06557 KPHMT-like Ketopantoat 100.0 4.9E-36 1.1E-40 294.5 21.1 178 79-281 2-197 (254)
18 PRK00311 panB 3-methyl-2-oxobu 100.0 2.4E-35 5.1E-40 291.1 21.7 232 78-337 4-260 (264)
19 TIGR00222 panB 3-methyl-2-oxob 100.0 1.9E-30 4E-35 255.8 25.9 234 78-337 4-259 (263)
20 PLN02424 ketopantoate hydroxym 100.0 1.6E-29 3.5E-34 255.0 19.0 234 78-338 24-287 (332)
21 PF02548 Pantoate_transf: Keto 99.9 1.3E-25 2.7E-30 221.0 14.7 180 78-281 5-201 (261)
22 COG0413 PanB Ketopantoate hydr 99.9 4.9E-24 1.1E-28 208.2 21.1 236 78-340 4-263 (268)
23 KOG2949 Ketopantoate hydroxyme 99.7 3E-17 6.4E-22 158.4 15.4 181 77-281 26-224 (306)
24 PF09370 TIM-br_sig_trns: TIM- 98.0 0.00018 3.9E-09 72.0 15.4 164 78-261 4-178 (268)
25 PRK08185 hypothetical protein; 98.0 0.0019 4.1E-08 65.5 22.9 215 80-326 4-244 (283)
26 cd00958 DhnA Class I fructose- 98.0 0.00065 1.4E-08 65.6 18.9 137 164-316 75-220 (235)
27 TIGR01037 pyrD_sub1_fam dihydr 97.9 0.0026 5.7E-08 63.7 22.3 205 90-316 14-269 (300)
28 TIGR00343 pyridoxal 5'-phospha 97.9 0.0014 3E-08 66.4 19.4 186 80-315 4-233 (287)
29 TIGR01859 fruc_bis_ald_ fructo 97.9 0.0055 1.2E-07 61.9 23.7 212 79-326 6-246 (282)
30 PRK06801 hypothetical protein; 97.9 0.0034 7.4E-08 63.7 22.2 217 79-326 8-249 (286)
31 TIGR01949 AroFGH_arch predicte 97.8 0.00088 1.9E-08 66.1 16.7 134 167-316 92-233 (258)
32 cd04727 pdxS PdxS is a subunit 97.8 0.0022 4.8E-08 64.8 19.1 185 81-315 3-230 (283)
33 PRK04180 pyridoxal biosynthesi 97.8 0.00079 1.7E-08 68.3 15.9 186 79-314 10-238 (293)
34 PRK07259 dihydroorotate dehydr 97.7 0.007 1.5E-07 60.8 21.9 200 94-315 19-268 (301)
35 cd02810 DHOD_DHPD_FMN Dihydroo 97.7 0.0079 1.7E-07 59.8 21.9 164 133-315 80-277 (289)
36 cd00952 CHBPH_aldolase Trans-o 97.7 0.0011 2.5E-08 67.3 15.3 124 163-302 27-159 (309)
37 PRK07998 gatY putative fructos 97.7 0.026 5.6E-07 57.3 24.7 213 79-326 8-245 (283)
38 PRK06806 fructose-bisphosphate 97.6 0.039 8.4E-07 55.9 24.9 212 79-325 8-245 (281)
39 PRK12738 kbaY tagatose-bisphos 97.6 0.027 5.8E-07 57.3 23.7 217 78-326 7-248 (286)
40 cd00954 NAL N-Acetylneuraminic 97.6 0.0025 5.5E-08 63.8 16.1 124 163-302 19-152 (288)
41 PRK09195 gatY tagatose-bisphos 97.6 0.026 5.6E-07 57.3 23.2 217 79-326 8-248 (284)
42 cd04732 HisA HisA. Phosphorib 97.6 0.0047 1E-07 59.2 16.8 175 101-316 34-225 (234)
43 PRK00748 1-(5-phosphoribosyl)- 97.5 0.0026 5.6E-08 61.0 14.4 183 97-315 30-225 (233)
44 PRK07315 fructose-bisphosphate 97.5 0.051 1.1E-06 55.4 24.4 216 79-328 8-250 (293)
45 cd00947 TBP_aldolase_IIB Tagat 97.5 0.037 8.1E-07 56.0 23.2 216 80-326 4-242 (276)
46 TIGR02313 HpaI-NOT-DapA 2,4-di 97.5 0.0035 7.5E-08 63.3 15.9 124 163-302 19-151 (294)
47 PRK12857 fructose-1,6-bisphosp 97.5 0.042 9E-07 55.8 23.5 217 79-326 8-248 (284)
48 cd04740 DHOD_1B_like Dihydroor 97.5 0.029 6.3E-07 56.1 22.3 204 90-315 12-265 (296)
49 PRK08610 fructose-bisphosphate 97.5 0.032 7E-07 56.7 22.5 214 79-326 8-249 (286)
50 PRK12737 gatY tagatose-bisphos 97.5 0.038 8.1E-07 56.2 22.9 213 79-326 8-248 (284)
51 cd00945 Aldolase_Class_I Class 97.5 0.017 3.7E-07 52.8 18.7 173 104-310 21-201 (201)
52 TIGR01858 tag_bisphos_ald clas 97.5 0.045 9.8E-07 55.5 23.3 213 79-326 6-246 (282)
53 TIGR00737 nifR3_yhdG putative 97.5 0.0047 1E-07 62.7 16.4 199 93-316 15-228 (319)
54 TIGR00007 phosphoribosylformim 97.5 0.0057 1.2E-07 58.8 15.8 174 102-315 34-223 (230)
55 TIGR00742 yjbN tRNA dihydrouri 97.5 0.0044 9.5E-08 63.6 15.9 199 93-316 8-229 (318)
56 PRK13585 1-(5-phosphoribosyl)- 97.4 0.0057 1.2E-07 59.2 15.9 175 101-316 37-228 (241)
57 TIGR00167 cbbA ketose-bisphosp 97.4 0.052 1.1E-06 55.2 22.6 218 79-326 8-252 (288)
58 TIGR00683 nanA N-acetylneurami 97.4 0.0044 9.6E-08 62.4 14.8 124 163-302 19-152 (290)
59 PLN02417 dihydrodipicolinate s 97.4 0.0038 8.2E-08 62.5 14.0 123 163-302 20-149 (280)
60 PRK04147 N-acetylneuraminate l 97.4 0.0036 7.9E-08 62.8 13.8 123 163-302 22-154 (293)
61 cd00945 Aldolase_Class_I Class 97.4 0.007 1.5E-07 55.3 14.5 130 153-311 1-150 (201)
62 PRK13398 3-deoxy-7-phosphohept 97.4 0.0067 1.5E-07 60.9 15.5 141 75-217 77-262 (266)
63 PRK07709 fructose-bisphosphate 97.3 0.075 1.6E-06 54.1 22.8 214 79-326 8-249 (285)
64 cd00408 DHDPS-like Dihydrodipi 97.3 0.0075 1.6E-07 59.6 15.2 123 163-302 16-147 (281)
65 PRK03170 dihydrodipicolinate s 97.3 0.005 1.1E-07 61.6 14.1 123 163-302 20-151 (292)
66 cd04731 HisF The cyclase subun 97.3 0.0051 1.1E-07 59.8 13.7 178 101-318 32-231 (243)
67 cd00953 KDG_aldolase KDG (2-ke 97.3 0.0065 1.4E-07 60.8 14.6 132 152-302 7-145 (279)
68 cd00951 KDGDH 5-dehydro-4-deox 97.3 0.0069 1.5E-07 60.9 14.8 119 163-302 19-146 (289)
69 TIGR00674 dapA dihydrodipicoli 97.3 0.0064 1.4E-07 60.8 14.2 104 163-281 17-128 (285)
70 cd00950 DHDPS Dihydrodipicolin 97.3 0.0059 1.3E-07 60.6 13.8 123 163-302 19-150 (284)
71 COG0329 DapA Dihydrodipicolina 97.2 0.0097 2.1E-07 60.5 15.3 122 163-302 23-154 (299)
72 TIGR03249 KdgD 5-dehydro-4-deo 97.2 0.0094 2E-07 60.0 14.7 119 163-302 24-151 (296)
73 PRK08673 3-deoxy-7-phosphohept 97.2 0.011 2.5E-07 61.2 15.5 160 57-222 129-333 (335)
74 PRK05286 dihydroorotate dehydr 97.1 0.056 1.2E-06 55.9 20.0 198 102-315 75-323 (344)
75 PRK10415 tRNA-dihydrouridine s 97.1 0.059 1.3E-06 55.2 19.7 201 93-316 17-230 (321)
76 PRK07565 dihydroorotate dehydr 97.1 0.054 1.2E-06 55.5 19.4 182 125-328 79-286 (334)
77 TIGR03572 WbuZ glycosyl amidat 97.1 0.016 3.4E-07 56.0 14.7 169 101-313 35-230 (232)
78 PF00701 DHDPS: Dihydrodipicol 97.1 0.0079 1.7E-07 60.0 12.8 104 163-281 20-131 (289)
79 PRK13399 fructose-1,6-bisphosp 97.1 0.49 1.1E-05 49.5 26.1 220 79-326 8-293 (347)
80 PRK03620 5-dehydro-4-deoxygluc 97.1 0.014 3.1E-07 59.0 14.7 119 163-302 26-153 (303)
81 cd00331 IGPS Indole-3-glycerol 97.0 0.036 7.7E-07 53.0 16.4 166 100-316 35-207 (217)
82 PRK11815 tRNA-dihydrouridine s 97.0 0.016 3.4E-07 59.7 14.4 199 93-317 18-240 (333)
83 COG0042 tRNA-dihydrouridine sy 97.0 0.022 4.7E-07 58.7 15.4 208 88-315 11-233 (323)
84 cd04739 DHOD_like Dihydroorota 97.0 0.045 9.7E-07 56.2 17.6 178 133-329 82-285 (325)
85 TIGR01361 DAHP_synth_Bsub phos 97.0 0.021 4.5E-07 57.1 14.4 154 56-215 60-258 (260)
86 PRK12595 bifunctional 3-deoxy- 97.0 0.029 6.2E-07 58.7 15.9 157 56-218 153-354 (360)
87 TIGR00736 nifR3_rel_arch TIM-b 96.9 0.059 1.3E-06 53.2 17.1 200 95-313 3-223 (231)
88 PRK05835 fructose-bisphosphate 96.9 0.38 8.3E-06 49.5 23.4 218 78-326 6-271 (307)
89 cd04738 DHOD_2_like Dihydrooro 96.9 0.15 3.3E-06 52.2 20.7 169 134-316 113-315 (327)
90 cd04740 DHOD_1B_like Dihydroor 96.9 0.1 2.2E-06 52.2 18.8 156 99-274 105-276 (296)
91 PF01116 F_bP_aldolase: Fructo 96.9 0.035 7.7E-07 56.4 15.6 212 81-326 9-251 (287)
92 cd02801 DUS_like_FMN Dihydrour 96.9 0.043 9.4E-07 52.3 15.4 197 95-315 9-218 (231)
93 PRK10550 tRNA-dihydrouridine s 96.9 0.018 3.8E-07 59.0 13.4 229 93-350 8-254 (312)
94 PRK00278 trpC indole-3-glycero 96.8 0.038 8.2E-07 55.1 15.2 166 99-316 73-246 (260)
95 PRK13397 3-deoxy-7-phosphohept 96.8 0.025 5.5E-07 56.5 13.8 152 56-213 50-246 (250)
96 PRK07084 fructose-bisphosphate 96.8 0.55 1.2E-05 48.7 23.8 217 79-326 14-284 (321)
97 PF05690 ThiG: Thiazole biosyn 96.8 0.011 2.4E-07 58.6 10.9 174 18-219 52-228 (247)
98 PRK13396 3-deoxy-7-phosphohept 96.8 0.037 8.1E-07 57.8 15.3 163 54-222 134-342 (352)
99 PRK05198 2-dehydro-3-deoxyphos 96.8 0.065 1.4E-06 54.0 16.3 153 59-216 54-259 (264)
100 CHL00162 thiG thiamin biosynth 96.8 0.015 3.3E-07 58.2 11.7 111 82-219 131-242 (267)
101 PF01207 Dus: Dihydrouridine s 96.8 0.0029 6.3E-08 64.3 6.7 147 151-313 54-216 (309)
102 cd02930 DCR_FMN 2,4-dienoyl-Co 96.8 0.11 2.4E-06 53.6 18.3 212 109-334 46-325 (353)
103 cd02803 OYE_like_FMN_family Ol 96.7 0.042 9.2E-07 55.4 14.4 140 167-315 143-316 (327)
104 cd02810 DHOD_DHPD_FMN Dihydroo 96.7 0.12 2.6E-06 51.4 17.2 82 101-187 116-198 (289)
105 cd02940 DHPD_FMN Dihydropyrimi 96.6 0.096 2.1E-06 52.9 16.4 172 125-315 70-286 (299)
106 PRK12457 2-dehydro-3-deoxyphos 96.6 0.096 2.1E-06 53.2 16.2 151 59-214 60-265 (281)
107 TIGR01362 KDO8P_synth 3-deoxy- 96.5 0.12 2.7E-06 51.9 16.1 152 59-215 46-250 (258)
108 PRK02083 imidazole glycerol ph 96.5 0.076 1.6E-06 52.1 14.7 177 101-316 35-233 (253)
109 PRK14024 phosphoribosyl isomer 96.5 0.19 4E-06 49.4 17.2 174 98-315 33-227 (241)
110 PRK00208 thiG thiazole synthas 96.5 0.045 9.9E-07 54.7 12.9 173 19-219 53-228 (250)
111 PRK05437 isopentenyl pyrophosp 96.5 0.59 1.3E-05 48.7 21.5 215 100-357 81-331 (352)
112 cd02809 alpha_hydroxyacid_oxid 96.4 0.41 8.9E-06 48.4 19.7 170 99-317 84-263 (299)
113 TIGR02151 IPP_isom_2 isopenten 96.4 0.48 1E-05 48.9 20.3 186 99-318 73-291 (333)
114 TIGR00735 hisF imidazoleglycer 96.4 0.14 3E-06 50.5 15.8 176 98-315 31-234 (254)
115 PRK09196 fructose-1,6-bisphosp 96.4 1.6 3.4E-05 45.9 24.6 225 79-326 8-293 (347)
116 cd02932 OYE_YqiM_FMN Old yello 96.4 0.1 2.2E-06 53.5 14.9 140 166-314 155-324 (336)
117 cd02911 arch_FMN Archeal FMN-b 96.4 0.27 5.9E-06 48.3 17.2 197 93-311 7-221 (233)
118 cd08205 RuBisCO_IV_RLP Ribulos 96.3 0.062 1.4E-06 56.3 13.5 110 141-262 120-232 (367)
119 cd04728 ThiG Thiazole synthase 96.3 0.065 1.4E-06 53.5 12.7 172 20-219 54-228 (248)
120 cd02940 DHPD_FMN Dihydropyrimi 96.3 0.096 2.1E-06 52.9 14.2 142 101-260 118-281 (299)
121 cd08210 RLP_RrRLP Ribulose bis 96.3 0.22 4.8E-06 52.3 17.2 159 141-312 116-286 (364)
122 PRK07259 dihydroorotate dehydr 96.3 0.087 1.9E-06 52.9 13.7 154 101-274 109-279 (301)
123 TIGR01521 FruBisAldo_II_B fruc 96.3 1.9 4.1E-05 45.3 24.7 225 79-326 6-291 (347)
124 cd00453 FTBP_aldolase_II Fruct 96.3 1.3 2.9E-05 46.3 22.3 228 80-327 4-289 (340)
125 PLN03033 2-dehydro-3-deoxyphos 96.2 0.23 4.9E-06 50.7 15.9 153 59-216 60-270 (290)
126 PRK10128 2-keto-3-deoxy-L-rham 96.1 0.87 1.9E-05 46.0 19.9 88 80-185 8-97 (267)
127 PLN02424 ketopantoate hydroxym 96.1 0.066 1.4E-06 55.5 12.1 140 169-315 46-207 (332)
128 cd02801 DUS_like_FMN Dihydrour 96.1 0.15 3.3E-06 48.6 13.9 95 93-187 60-160 (231)
129 cd04734 OYE_like_3_FMN Old yel 96.1 0.71 1.5E-05 47.8 19.6 151 167-332 143-332 (343)
130 PRK08318 dihydropyrimidine deh 96.1 0.23 5E-06 52.4 16.1 190 125-328 70-300 (420)
131 cd04741 DHOD_1A_like Dihydroor 96.0 2 4.3E-05 43.5 22.4 177 133-328 71-290 (294)
132 PLN02591 tryptophan synthase 96.0 0.54 1.2E-05 47.0 17.7 172 103-315 23-223 (250)
133 PRK09197 fructose-bisphosphate 96.0 1.4 3E-05 46.3 21.1 227 80-327 12-296 (350)
134 cd04730 NPD_like 2-Nitropropan 95.9 0.31 6.8E-06 46.6 15.2 171 93-317 10-192 (236)
135 cd00946 FBP_aldolase_IIA Class 95.9 2 4.4E-05 45.0 21.7 230 79-327 6-292 (345)
136 TIGR00262 trpA tryptophan synt 95.9 0.58 1.3E-05 46.7 17.2 174 102-316 30-233 (256)
137 PRK01130 N-acetylmannosamine-6 95.8 0.63 1.4E-05 44.6 16.7 142 140-315 46-207 (221)
138 cd02811 IDI-2_FMN Isopentenyl- 95.8 0.97 2.1E-05 46.5 18.9 186 141-357 102-324 (326)
139 PF02548 Pantoate_transf: Keto 95.8 0.1 2.2E-06 52.5 11.4 107 169-282 27-136 (261)
140 PRK08318 dihydropyrimidine deh 95.8 0.18 3.8E-06 53.3 13.7 160 101-274 118-299 (420)
141 TIGR00737 nifR3_yhdG putative 95.7 0.24 5.2E-06 50.4 13.8 161 92-274 67-238 (319)
142 cd04733 OYE_like_2_FMN Old yel 95.7 0.36 7.8E-06 49.6 15.2 140 166-314 150-326 (338)
143 cd00564 TMP_TenI Thiamine mono 95.6 0.52 1.1E-05 43.0 14.8 67 243-315 105-183 (196)
144 TIGR01037 pyrD_sub1_fam dihydr 95.6 0.31 6.7E-06 48.9 14.2 79 102-186 109-190 (300)
145 PRK01033 imidazole glycerol ph 95.6 0.36 7.7E-06 47.9 14.4 174 102-316 36-232 (258)
146 cd03174 DRE_TIM_metallolyase D 95.5 0.33 7.2E-06 47.0 13.8 207 102-329 25-243 (265)
147 TIGR00222 panB 3-methyl-2-oxob 95.4 0.64 1.4E-05 47.0 15.6 136 169-313 26-183 (263)
148 PRK07226 fructose-bisphosphate 95.4 1.2 2.6E-05 44.4 17.4 166 150-331 73-253 (267)
149 PRK04302 triosephosphate isome 95.3 0.66 1.4E-05 44.9 15.0 140 146-316 52-208 (223)
150 TIGR03151 enACPred_II putative 95.3 1.1 2.3E-05 45.9 17.2 183 80-317 3-197 (307)
151 PRK12331 oxaloacetate decarbox 95.3 0.75 1.6E-05 49.6 16.6 295 81-432 11-324 (448)
152 PF01791 DeoC: DeoC/LacD famil 95.3 0.67 1.5E-05 45.0 14.9 121 150-279 56-191 (236)
153 TIGR01520 FruBisAldo_II_A fruc 95.3 4.8 0.0001 42.5 22.0 225 81-327 19-304 (357)
154 COG5564 Predicted TIM-barrel e 95.3 0.15 3.2E-06 50.5 10.1 161 78-261 10-184 (276)
155 cd04722 TIM_phosphate_binding 95.2 1.7 3.7E-05 38.8 16.3 171 101-310 17-199 (200)
156 PRK10558 alpha-dehydro-beta-de 95.2 3.1 6.6E-05 41.7 19.5 88 79-184 8-97 (256)
157 PRK13111 trpA tryptophan synth 95.2 2.4 5.2E-05 42.5 18.6 175 102-318 32-236 (258)
158 PRK00043 thiE thiamine-phospha 95.1 0.8 1.7E-05 43.0 14.4 153 104-315 29-193 (212)
159 CHL00200 trpA tryptophan synth 95.1 1.5 3.2E-05 44.2 17.0 175 102-316 35-237 (263)
160 cd02931 ER_like_FMN Enoate red 95.0 0.7 1.5E-05 48.5 15.1 152 168-334 153-354 (382)
161 TIGR00736 nifR3_rel_arch TIM-b 94.9 0.35 7.7E-06 47.8 11.9 102 134-260 119-220 (231)
162 cd04729 NanE N-acetylmannosami 94.9 0.78 1.7E-05 44.0 14.0 144 141-316 51-212 (219)
163 PF03932 CutC: CutC family; I 94.9 3.8 8.2E-05 39.9 18.6 177 95-307 6-196 (201)
164 cd04728 ThiG Thiazole synthase 94.9 1.1 2.4E-05 44.9 15.2 136 163-325 74-224 (248)
165 PRK14042 pyruvate carboxylase 94.9 1.8 4E-05 48.4 18.5 274 101-431 31-320 (596)
166 TIGR00126 deoC deoxyribose-pho 94.8 0.52 1.1E-05 45.9 12.6 144 150-309 55-203 (211)
167 cd04723 HisA_HisF Phosphoribos 94.8 1.5 3.3E-05 42.9 15.9 168 101-315 40-223 (233)
168 PF04131 NanE: Putative N-acet 94.8 0.41 8.9E-06 46.3 11.5 142 140-317 22-180 (192)
169 PRK09282 pyruvate carboxylase 94.8 1.5 3.2E-05 49.0 17.5 291 81-431 11-320 (592)
170 cd06557 KPHMT-like Ketopantoat 94.7 0.18 3.9E-06 50.5 9.4 137 170-313 24-181 (254)
171 PRK09250 fructose-bisphosphate 94.7 2.6 5.6E-05 44.3 18.0 146 95-271 89-248 (348)
172 PLN02858 fructose-bisphosphate 94.6 3.5 7.7E-05 50.4 21.5 207 86-323 1111-1344(1378)
173 cd06556 ICL_KPHMT Members of t 94.6 0.94 2E-05 45.0 14.1 87 171-262 25-111 (240)
174 cd03316 MR_like Mandelate race 94.4 0.81 1.7E-05 46.8 13.5 115 150-282 126-245 (357)
175 TIGR01740 pyrF orotidine 5'-ph 94.4 2.9 6.3E-05 40.2 16.6 145 141-315 41-201 (213)
176 PRK15452 putative protease; Pr 94.4 2.6 5.6E-05 45.5 17.8 146 96-276 10-157 (443)
177 PRK06512 thiamine-phosphate py 94.4 1.9 4.1E-05 42.2 15.4 131 136-315 57-197 (221)
178 cd02933 OYE_like_FMN Old yello 94.3 1.3 2.8E-05 45.8 14.8 151 166-332 153-331 (338)
179 KOG2335 tRNA-dihydrouridine sy 94.3 0.88 1.9E-05 47.8 13.4 147 149-312 72-235 (358)
180 PRK12581 oxaloacetate decarbox 94.3 4.9 0.00011 43.9 19.6 281 100-433 39-334 (468)
181 COG0826 Collagenase and relate 94.2 3 6.6E-05 43.6 17.4 145 98-276 15-160 (347)
182 TIGR01302 IMP_dehydrog inosine 94.2 0.39 8.4E-06 51.5 11.1 125 167-310 163-293 (450)
183 PRK14041 oxaloacetate decarbox 94.2 1.6 3.5E-05 47.4 15.8 267 100-431 29-319 (467)
184 cd03315 MLE_like Muconate lact 94.2 3.5 7.5E-05 40.6 17.0 133 151-314 75-214 (265)
185 cd00381 IMPDH IMPDH: The catal 94.2 3.5 7.5E-05 42.6 17.6 172 93-314 42-230 (325)
186 PRK00311 panB 3-methyl-2-oxobu 94.2 0.3 6.5E-06 49.2 9.5 137 169-312 26-183 (264)
187 PF04131 NanE: Putative N-acet 94.1 0.52 1.1E-05 45.6 10.7 110 75-214 79-189 (192)
188 PRK12330 oxaloacetate decarbox 94.1 4.8 0.0001 44.2 19.2 253 80-363 11-282 (499)
189 TIGR00693 thiE thiamine-phosph 94.1 2 4.4E-05 40.0 14.5 132 135-315 42-185 (196)
190 PF05690 ThiG: Thiazole biosyn 94.1 1.8 4E-05 43.3 14.6 128 160-313 71-207 (247)
191 KOG1260 Isocitrate lyase [Ener 94.0 0.054 1.2E-06 57.9 4.0 91 239-332 336-441 (492)
192 cd02809 alpha_hydroxyacid_oxid 94.0 0.33 7.2E-06 49.1 9.6 91 79-184 162-255 (299)
193 COG2022 ThiG Uncharacterized e 94.0 0.63 1.4E-05 46.5 11.1 171 19-219 60-235 (262)
194 cd02803 OYE_like_FMN_family Ol 94.0 3 6.4E-05 42.2 16.4 148 100-260 145-311 (327)
195 cd04735 OYE_like_4_FMN Old yel 94.0 1.9 4.2E-05 44.7 15.4 165 167-345 146-343 (353)
196 PRK13587 1-(5-phosphoribosyl)- 93.9 2.1 4.5E-05 42.1 14.8 174 100-315 35-226 (234)
197 PRK14017 galactonate dehydrata 93.9 1.8 3.9E-05 45.2 15.1 133 160-312 121-260 (382)
198 cd04739 DHOD_like Dihydroorota 93.9 1.4 3E-05 45.3 14.0 154 100-274 116-283 (325)
199 cd04724 Tryptophan_synthase_al 93.9 6.4 0.00014 38.7 18.1 175 102-317 20-222 (242)
200 cd04741 DHOD_1A_like Dihydroor 93.9 0.86 1.9E-05 46.1 12.3 149 109-274 119-289 (294)
201 TIGR01163 rpe ribulose-phospha 93.8 2.2 4.7E-05 39.9 14.2 168 101-315 16-198 (210)
202 TIGR01769 GGGP geranylgeranylg 93.8 1.3 2.8E-05 43.2 12.8 170 102-310 17-205 (205)
203 PRK07028 bifunctional hexulose 93.8 7.1 0.00015 41.5 19.5 143 138-316 44-196 (430)
204 TIGR01304 IMP_DH_rel_2 IMP deh 93.8 2.4 5.2E-05 44.8 15.7 135 100-261 146-285 (369)
205 PRK00208 thiG thiazole synthas 93.7 2.9 6.2E-05 42.1 15.3 129 160-315 71-209 (250)
206 TIGR00259 thylakoid_BtpA membr 93.7 1.3 2.9E-05 44.5 13.1 160 101-283 33-206 (257)
207 PF03437 BtpA: BtpA family; I 93.7 1.1 2.3E-05 45.1 12.4 161 101-283 34-206 (254)
208 cd02911 arch_FMN Archeal FMN-b 93.6 1.1 2.3E-05 44.2 12.1 97 134-260 124-220 (233)
209 COG0352 ThiE Thiamine monophos 93.6 2.4 5.2E-05 41.5 14.4 146 150-315 7-191 (211)
210 PRK07695 transcriptional regul 93.6 5.1 0.00011 37.9 16.4 132 133-315 38-182 (201)
211 PRK11840 bifunctional sulfur c 93.6 1.2 2.5E-05 46.4 12.8 173 19-219 127-302 (326)
212 PRK13125 trpA tryptophan synth 93.6 3.9 8.4E-05 40.2 16.0 143 140-315 64-219 (244)
213 TIGR01108 oadA oxaloacetate de 93.6 4.2 9.2E-05 45.4 17.9 273 100-431 25-315 (582)
214 cd04733 OYE_like_2_FMN Old yel 93.5 4.1 8.8E-05 41.9 16.7 88 100-188 153-259 (338)
215 PRK10415 tRNA-dihydrouridine s 93.5 1.9 4.1E-05 44.3 14.2 152 101-273 82-239 (321)
216 TIGR03239 GarL 2-dehydro-3-deo 93.5 8.9 0.00019 38.2 19.1 87 80-184 2-90 (249)
217 COG0826 Collagenase and relate 93.4 1.8 3.9E-05 45.3 14.1 143 169-325 17-159 (347)
218 PF00682 HMGL-like: HMGL-like 93.4 1.1 2.4E-05 43.2 11.7 155 102-277 20-181 (237)
219 PRK05286 dihydroorotate dehydr 93.4 0.75 1.6E-05 47.6 11.2 141 102-260 160-318 (344)
220 PRK12999 pyruvate carboxylase; 93.4 3.1 6.6E-05 50.0 17.6 233 102-365 561-818 (1146)
221 COG0434 SgcQ Predicted TIM-bar 93.4 1.6 3.5E-05 43.8 12.9 154 102-283 40-211 (263)
222 cd00959 DeoC 2-deoxyribose-5-p 93.4 2.5 5.4E-05 40.4 13.9 139 153-307 57-200 (203)
223 cd00381 IMPDH IMPDH: The catal 93.2 0.53 1.2E-05 48.5 9.7 100 78-184 123-225 (325)
224 cd03321 mandelate_racemase Man 93.2 1.8 4E-05 44.6 13.6 142 151-322 131-279 (355)
225 PRK05848 nicotinate-nucleotide 93.2 1.8 3.9E-05 43.9 13.2 146 77-262 106-259 (273)
226 PRK07565 dihydroorotate dehydr 93.1 2.8 6E-05 43.1 14.7 81 100-187 118-199 (334)
227 PRK13523 NADPH dehydrogenase N 93.1 5.4 0.00012 41.4 16.9 110 167-283 144-281 (337)
228 COG0413 PanB Ketopantoate hydr 93.1 0.95 2.1E-05 45.7 10.9 108 168-282 25-135 (268)
229 PRK06852 aldolase; Validated 93.1 8.2 0.00018 39.9 17.9 204 93-331 55-289 (304)
230 PRK08649 inosine 5-monophospha 93.0 2 4.3E-05 45.3 13.7 139 99-262 144-287 (368)
231 PRK02615 thiamine-phosphate py 93.0 4.3 9.4E-05 42.6 16.1 132 134-315 185-327 (347)
232 PRK09490 metH B12-dependent me 92.9 1.1 2.4E-05 53.9 12.8 128 134-275 253-423 (1229)
233 TIGR01305 GMP_reduct_1 guanosi 92.9 0.65 1.4E-05 48.5 9.7 100 79-185 139-241 (343)
234 PLN02274 inosine-5'-monophosph 92.8 0.52 1.1E-05 51.6 9.3 95 79-185 278-380 (505)
235 PRK05692 hydroxymethylglutaryl 92.8 4.5 9.7E-05 41.1 15.4 204 102-330 32-259 (287)
236 PRK07807 inosine 5-monophospha 92.7 0.52 1.1E-05 51.3 9.2 100 78-184 256-358 (479)
237 cd03327 MR_like_2 Mandelate ra 92.7 1.7 3.6E-05 44.7 12.5 117 150-282 108-227 (341)
238 PRK14040 oxaloacetate decarbox 92.7 9.8 0.00021 42.7 19.2 274 101-432 32-322 (593)
239 cd02932 OYE_YqiM_FMN Old yello 92.7 3.6 7.8E-05 42.2 14.8 86 100-186 158-262 (336)
240 PRK08255 salicylyl-CoA 5-hydro 92.6 2.5 5.4E-05 48.3 14.8 141 167-316 553-723 (765)
241 TIGR01303 IMP_DH_rel_1 IMP deh 92.6 0.68 1.5E-05 50.3 9.8 105 74-185 250-357 (475)
242 TIGR02127 pyrF_sub2 orotidine 92.6 4 8.7E-05 41.1 14.6 110 149-279 85-212 (261)
243 PRK11572 copper homeostasis pr 92.6 2 4.3E-05 43.2 12.3 130 170-313 13-151 (248)
244 PRK11572 copper homeostasis pr 92.5 13 0.00028 37.4 19.1 176 94-307 6-195 (248)
245 cd03325 D-galactonate_dehydrat 92.5 3.4 7.3E-05 42.7 14.4 117 151-282 113-232 (352)
246 cd04729 NanE N-acetylmannosami 92.5 1.2 2.6E-05 42.7 10.5 93 79-184 113-205 (219)
247 PF01207 Dus: Dihydrouridine s 92.4 0.96 2.1E-05 46.2 10.2 148 91-260 57-213 (309)
248 cd03329 MR_like_4 Mandelate ra 92.4 4.9 0.00011 41.7 15.5 124 133-281 113-244 (368)
249 PF01729 QRPTase_C: Quinolinat 92.3 1.4 3E-05 41.6 10.4 146 77-262 4-157 (169)
250 cd04824 eu_ALAD_PBGS_cysteine_ 92.3 4.8 0.0001 41.8 14.9 170 92-284 41-270 (320)
251 PRK01130 N-acetylmannosamine-6 92.2 1.3 2.7E-05 42.6 10.2 94 79-185 108-202 (221)
252 TIGR02082 metH 5-methyltetrahy 92.2 1.8 4E-05 51.9 13.5 128 134-275 237-407 (1178)
253 PLN02495 oxidoreductase, actin 92.1 4.5 9.7E-05 43.0 15.0 120 125-259 84-213 (385)
254 COG0157 NadC Nicotinate-nucleo 92.1 0.77 1.7E-05 46.8 8.8 65 243-312 198-264 (280)
255 PF00490 ALAD: Delta-aminolevu 92.1 5.6 0.00012 41.4 15.1 169 92-284 47-274 (324)
256 PRK08195 4-hyroxy-2-oxovalerat 92.1 5.1 0.00011 41.6 15.1 145 102-274 31-181 (337)
257 PF00478 IMPDH: IMP dehydrogen 92.0 3.1 6.8E-05 43.7 13.5 132 150-312 37-179 (352)
258 PRK08227 autoinducer 2 aldolas 92.0 3.6 7.9E-05 41.6 13.5 163 150-331 74-248 (264)
259 PRK11858 aksA trans-homoaconit 91.8 17 0.00036 38.3 18.8 156 79-257 56-217 (378)
260 cd03319 L-Ala-DL-Glu_epimerase 91.8 5.3 0.00012 40.3 14.7 132 150-313 123-261 (316)
261 cd03328 MR_like_3 Mandelate ra 91.8 2.6 5.7E-05 43.6 12.7 121 133-282 113-240 (352)
262 COG2876 AroA 3-deoxy-D-arabino 91.8 0.96 2.1E-05 45.9 9.0 134 79-214 99-277 (286)
263 cd03323 D-glucarate_dehydratas 91.7 4.5 9.9E-05 42.7 14.5 98 163-283 168-267 (395)
264 PRK06843 inosine 5-monophospha 91.7 1.2 2.5E-05 47.7 10.1 100 78-184 182-284 (404)
265 cd04736 MDH_FMN Mandelate dehy 91.6 0.75 1.6E-05 48.4 8.5 92 78-186 228-319 (361)
266 TIGR02151 IPP_isom_2 isopenten 91.6 7.7 0.00017 40.1 15.8 78 101-186 133-211 (333)
267 PRK10550 tRNA-dihydrouridine s 91.6 4.6 9.9E-05 41.5 14.0 151 101-271 80-237 (312)
268 PF03932 CutC: CutC family; I 91.6 1.2 2.6E-05 43.3 9.3 128 169-312 11-149 (201)
269 cd04725 OMP_decarboxylase_like 91.6 9.3 0.0002 36.9 15.5 146 141-315 41-205 (216)
270 cd04724 Tryptophan_synthase_al 91.5 0.64 1.4E-05 45.8 7.5 104 159-273 8-123 (242)
271 TIGR03151 enACPred_II putative 91.5 1 2.3E-05 46.0 9.3 92 79-186 100-191 (307)
272 TIGR00035 asp_race aspartate r 91.5 2.1 4.6E-05 41.5 11.0 101 201-310 12-123 (229)
273 PLN02489 homocysteine S-methyl 91.5 2.5 5.4E-05 43.8 12.2 44 242-285 169-216 (335)
274 PRK00125 pyrF orotidine 5'-pho 91.5 18 0.00038 36.9 19.9 169 103-304 45-235 (278)
275 cd04747 OYE_like_5_FMN Old yel 91.5 4.9 0.00011 42.2 14.3 155 166-333 145-346 (361)
276 cd04738 DHOD_2_like Dihydrooro 91.5 3.4 7.3E-05 42.5 13.0 127 134-273 181-325 (327)
277 TIGR01306 GMP_reduct_2 guanosi 91.4 0.72 1.6E-05 47.8 8.0 93 80-185 127-227 (321)
278 PRK11613 folP dihydropteroate 91.4 7.2 0.00016 39.8 15.0 104 161-282 34-138 (282)
279 PLN02334 ribulose-phosphate 3- 91.3 2.5 5.5E-05 41.0 11.3 68 244-316 129-208 (229)
280 TIGR03247 glucar-dehydr glucar 91.3 2.8 6.1E-05 45.1 12.6 98 163-283 180-285 (441)
281 cd02811 IDI-2_FMN Isopentenyl- 91.2 6.4 0.00014 40.6 14.7 77 102-186 133-210 (326)
282 PTZ00314 inosine-5'-monophosph 91.2 1.1 2.4E-05 48.8 9.6 95 79-185 271-373 (495)
283 PRK13523 NADPH dehydrogenase N 91.2 9.2 0.0002 39.7 15.9 156 100-275 146-322 (337)
284 COG2022 ThiG Uncharacterized e 91.1 13 0.00028 37.5 15.8 129 160-314 78-215 (262)
285 TIGR01302 IMP_dehydrog inosine 91.1 1.4 3E-05 47.4 10.0 101 79-186 254-357 (450)
286 PF13714 PEP_mutase: Phosphoen 91.1 2.1 4.6E-05 42.4 10.7 127 100-262 89-221 (238)
287 cd07948 DRE_TIM_HCS Saccharomy 91.1 13 0.00029 37.2 16.4 143 91-257 66-213 (262)
288 TIGR03128 RuMP_HxlA 3-hexulose 91.1 6.9 0.00015 36.8 13.7 143 140-316 41-192 (206)
289 cd03326 MR_like_1 Mandelate ra 91.0 2.5 5.5E-05 44.5 11.8 99 163-282 160-261 (385)
290 PF02581 TMP-TENI: Thiamine mo 91.0 8.1 0.00018 36.0 14.0 121 166-309 13-176 (180)
291 TIGR00640 acid_CoA_mut_C methy 91.0 0.89 1.9E-05 41.1 7.3 76 248-325 48-127 (132)
292 cd04737 LOX_like_FMN L-Lactate 91.0 1.3 2.7E-05 46.5 9.4 84 88-186 221-306 (351)
293 PLN02746 hydroxymethylglutaryl 90.9 3.6 7.8E-05 43.1 12.6 154 102-274 74-234 (347)
294 PRK15452 putative protease; Pr 90.8 5.7 0.00012 43.0 14.4 140 169-322 14-153 (443)
295 cd07937 DRE_TIM_PC_TC_5S Pyruv 90.8 13 0.00027 37.4 16.0 205 101-330 26-246 (275)
296 TIGR02311 HpaI 2,4-dihydroxyhe 90.7 19 0.00041 35.8 18.3 87 80-184 2-90 (249)
297 cd00331 IGPS Indole-3-glycerol 90.7 0.86 1.9E-05 43.5 7.4 83 240-329 31-118 (217)
298 cd03332 LMO_FMN L-Lactate 2-mo 90.7 1.9 4.2E-05 45.7 10.5 92 78-184 245-336 (383)
299 PRK09485 mmuM homocysteine met 90.5 2.3 5E-05 43.3 10.6 43 244-286 144-190 (304)
300 PRK10128 2-keto-3-deoxy-L-rham 90.5 2.2 4.9E-05 43.0 10.4 83 170-276 31-113 (267)
301 TIGR02660 nifV_homocitr homoci 90.5 22 0.00048 37.2 18.0 153 79-257 53-214 (365)
302 PRK05437 isopentenyl pyrophosp 90.5 7.7 0.00017 40.5 14.6 83 96-186 134-218 (352)
303 TIGR01496 DHPS dihydropteroate 90.4 10 0.00022 38.0 14.8 102 163-282 21-123 (257)
304 PRK08385 nicotinate-nucleotide 90.4 2.4 5.3E-05 43.1 10.6 90 211-312 169-261 (278)
305 PF00478 IMPDH: IMP dehydrogen 90.4 1.6 3.6E-05 45.8 9.6 86 89-186 150-241 (352)
306 TIGR03239 GarL 2-dehydro-3-deo 90.3 2.2 4.7E-05 42.6 9.9 83 170-276 25-107 (249)
307 TIGR01305 GMP_reduct_1 guanosi 90.3 5.3 0.00011 41.9 13.0 144 132-310 77-241 (343)
308 cd07945 DRE_TIM_CMS Leptospira 90.2 9.8 0.00021 38.5 14.7 134 101-257 79-220 (280)
309 cd00564 TMP_TenI Thiamine mono 90.2 2.9 6.4E-05 38.0 10.1 96 78-188 85-181 (196)
310 cd04726 KGPDC_HPS 3-Keto-L-gul 89.9 17 0.00036 33.9 15.2 140 139-315 41-191 (202)
311 PRK10558 alpha-dehydro-beta-de 89.9 2.4 5.2E-05 42.4 10.0 84 169-276 31-114 (256)
312 cd03322 rpsA The starvation se 89.8 6.5 0.00014 40.8 13.4 92 163-283 126-220 (361)
313 PRK07107 inosine 5-monophospha 89.8 1 2.2E-05 49.3 7.8 102 78-185 271-381 (502)
314 PRK02506 dihydroorotate dehydr 89.6 4.8 0.0001 41.2 12.1 158 100-274 109-287 (310)
315 PRK06096 molybdenum transport 89.6 1.7 3.6E-05 44.5 8.7 125 167-311 136-265 (284)
316 PRK09283 delta-aminolevulinic 89.6 11 0.00024 39.3 14.5 168 92-285 49-273 (323)
317 TIGR02708 L_lactate_ox L-lacta 89.6 2.5 5.4E-05 44.7 10.1 92 80-186 219-313 (367)
318 COG3010 NanE Putative N-acetyl 89.5 6.9 0.00015 38.7 12.4 110 79-215 117-226 (229)
319 PRK02714 O-succinylbenzoate sy 89.5 7.1 0.00015 39.9 13.2 111 150-283 109-223 (320)
320 PRK00230 orotidine 5'-phosphat 89.4 22 0.00048 34.7 16.3 146 142-316 46-213 (230)
321 cd07941 DRE_TIM_LeuA3 Desulfob 89.2 13 0.00029 37.1 14.7 102 169-274 82-188 (273)
322 PRK05105 O-succinylbenzoate sy 89.1 4.5 9.7E-05 41.5 11.4 102 160-283 112-215 (322)
323 PF02219 MTHFR: Methylenetetra 89.0 27 0.00058 35.1 16.9 191 80-285 1-208 (287)
324 COG2513 PrpB PEP phosphonomuta 89.0 1.7 3.6E-05 44.6 8.1 136 100-263 97-237 (289)
325 PRK10605 N-ethylmaleimide redu 89.0 13 0.00029 38.9 15.1 150 167-332 161-338 (362)
326 cd03324 rTSbeta_L-fuconate_deh 89.0 5.1 0.00011 42.7 12.2 99 163-282 196-299 (415)
327 cd07943 DRE_TIM_HOA 4-hydroxy- 89.0 19 0.00041 35.6 15.5 145 102-274 28-178 (263)
328 PF01729 QRPTase_C: Quinolinat 89.0 0.95 2.1E-05 42.7 6.0 64 245-313 92-158 (169)
329 cd02930 DCR_FMN 2,4-dienoyl-Co 89.0 14 0.00031 38.2 15.2 86 100-185 141-244 (353)
330 PRK05692 hydroxymethylglutaryl 88.8 24 0.00052 35.9 16.4 134 102-257 85-228 (287)
331 PF00977 His_biosynth: Histidi 88.8 5.1 0.00011 39.1 11.2 171 101-314 34-224 (229)
332 PF00290 Trp_syntA: Tryptophan 88.7 5.9 0.00013 40.0 11.7 175 103-319 31-235 (259)
333 TIGR03217 4OH_2_O_val_ald 4-hy 88.7 19 0.00041 37.5 15.8 145 102-274 30-180 (333)
334 cd04730 NPD_like 2-Nitropropan 88.7 3.6 7.7E-05 39.4 9.9 92 84-188 97-188 (236)
335 PLN02274 inosine-5'-monophosph 88.7 0.76 1.6E-05 50.3 5.8 65 240-310 247-317 (505)
336 TIGR00742 yjbN tRNA dihydrouri 88.6 17 0.00038 37.4 15.4 159 101-273 72-238 (318)
337 PRK06559 nicotinate-nucleotide 88.6 2.2 4.7E-05 43.8 8.6 63 244-311 208-270 (290)
338 TIGR01303 IMP_DH_rel_1 IMP deh 88.6 8.9 0.00019 41.8 13.8 65 103-187 231-296 (475)
339 PLN02535 glycolate oxidase 88.5 2.2 4.8E-05 45.0 8.9 93 78-187 215-309 (364)
340 PTZ00314 inosine-5'-monophosph 88.5 4.3 9.4E-05 44.3 11.4 117 166-313 241-376 (495)
341 PRK05567 inosine 5'-monophosph 88.4 2.5 5.3E-05 45.9 9.5 99 80-185 259-360 (486)
342 cd02922 FCB2_FMN Flavocytochro 88.4 3.9 8.4E-05 42.7 10.6 95 79-185 203-300 (344)
343 cd02929 TMADH_HD_FMN Trimethyl 88.3 14 0.00031 38.7 14.7 152 167-334 152-338 (370)
344 PRK11858 aksA trans-homoaconit 88.2 10 0.00022 39.9 13.7 147 102-274 32-182 (378)
345 PRK06978 nicotinate-nucleotide 88.2 2.3 5.1E-05 43.7 8.6 65 243-312 215-279 (294)
346 PRK08649 inosine 5-monophospha 88.2 2.7 5.8E-05 44.4 9.3 99 78-184 176-284 (368)
347 TIGR02311 HpaI 2,4-dihydroxyhe 88.2 4 8.7E-05 40.5 10.2 84 169-276 24-107 (249)
348 PRK05567 inosine 5'-monophosph 88.1 4.1 8.8E-05 44.2 10.9 126 167-310 167-297 (486)
349 CHL00200 trpA tryptophan synth 88.1 16 0.00034 36.9 14.3 107 153-272 17-137 (263)
350 PRK08195 4-hyroxy-2-oxovalerat 88.1 15 0.00033 38.1 14.7 136 92-261 84-220 (337)
351 PRK05458 guanosine 5'-monophos 88.1 2.8 6.1E-05 43.6 9.2 85 89-186 140-231 (326)
352 cd07944 DRE_TIM_HOA_like 4-hyd 88.0 6.9 0.00015 39.2 11.7 129 97-257 83-212 (266)
353 PRK09389 (R)-citramalate synth 88.0 12 0.00026 40.9 14.4 200 102-329 30-239 (488)
354 cd04732 HisA HisA. Phosphorib 88.0 6.1 0.00013 37.8 11.0 123 166-310 30-166 (234)
355 PRK05458 guanosine 5'-monophos 88.0 0.86 1.9E-05 47.3 5.4 67 240-312 96-170 (326)
356 PLN02898 HMP-P kinase/thiamin- 87.9 22 0.00049 38.5 16.4 143 151-314 293-479 (502)
357 PRK07695 transcriptional regul 87.9 3.7 7.9E-05 38.9 9.3 96 77-188 85-180 (201)
358 CHL00162 thiG thiamin biosynth 87.8 34 0.00074 34.9 16.5 125 163-313 82-221 (267)
359 TIGR02320 PEP_mutase phosphoen 87.8 34 0.00073 35.0 16.6 85 102-186 98-190 (285)
360 PLN02495 oxidoreductase, actin 87.7 14 0.0003 39.4 14.3 215 93-332 120-364 (385)
361 PRK05096 guanosine 5'-monophos 87.7 2.9 6.3E-05 43.9 9.0 86 89-186 152-243 (346)
362 PRK11197 lldD L-lactate dehydr 87.6 2.6 5.6E-05 44.7 8.8 82 88-184 245-328 (381)
363 COG0821 gcpE 1-hydroxy-2-methy 87.6 15 0.00032 38.7 14.0 146 104-289 44-206 (361)
364 PRK12858 tagatose 1,6-diphosph 87.6 12 0.00027 39.1 13.7 151 94-259 104-275 (340)
365 PRK00366 ispG 4-hydroxy-3-meth 87.6 18 0.00039 38.3 14.7 148 103-289 49-213 (360)
366 COG0214 SNZ1 Pyridoxine biosyn 87.5 7.8 0.00017 39.1 11.4 197 80-316 14-243 (296)
367 cd00739 DHPS DHPS subgroup of 87.5 24 0.00051 35.4 15.1 103 163-282 22-125 (257)
368 PRK05742 nicotinate-nucleotide 87.5 4.2 9.1E-05 41.4 9.9 75 223-312 188-263 (277)
369 cd02933 OYE_like_FMN Old yello 87.4 32 0.00068 35.7 16.5 151 100-273 156-329 (338)
370 PRK07107 inosine 5-monophospha 87.4 3.9 8.5E-05 44.8 10.3 125 167-312 182-314 (502)
371 COG0269 SgbH 3-hexulose-6-phos 87.4 31 0.00068 34.2 15.4 159 139-330 44-214 (217)
372 PRK11815 tRNA-dihydrouridine s 87.3 8.1 0.00018 39.9 12.1 88 100-187 81-173 (333)
373 cd07948 DRE_TIM_HCS Saccharomy 87.3 16 0.00035 36.6 13.9 147 103-274 29-178 (262)
374 COG0284 PyrF Orotidine-5'-phos 87.3 34 0.00073 34.2 17.6 182 91-316 15-220 (240)
375 PRK10605 N-ethylmaleimide redu 87.2 31 0.00067 36.2 16.5 150 100-274 163-337 (362)
376 PRK13753 dihydropteroate synth 87.2 15 0.00033 37.5 13.7 105 161-284 21-126 (279)
377 COG0107 HisF Imidazoleglycerol 87.2 14 0.00031 37.1 13.1 159 80-283 22-205 (256)
378 TIGR00612 ispG_gcpE 1-hydroxy- 87.2 17 0.00037 38.2 14.2 232 103-383 41-313 (346)
379 TIGR03217 4OH_2_O_val_ald 4-hy 87.2 17 0.00038 37.7 14.4 133 92-256 83-216 (333)
380 COG1794 RacX Aspartate racemas 87.2 3.1 6.7E-05 41.4 8.4 108 193-309 4-122 (230)
381 PRK06843 inosine 5-monophospha 86.9 3 6.4E-05 44.7 8.8 66 240-311 152-223 (404)
382 TIGR01334 modD putative molybd 86.9 3 6.5E-05 42.4 8.5 66 243-311 198-264 (277)
383 PLN02826 dihydroorotate dehydr 86.8 16 0.00035 39.1 14.3 129 134-275 240-388 (409)
384 PRK13384 delta-aminolevulinic 86.8 18 0.00039 37.7 14.1 167 92-284 51-273 (322)
385 PRK05581 ribulose-phosphate 3- 86.8 14 0.00031 34.8 12.7 28 288-316 177-204 (220)
386 PRK07534 methionine synthase I 86.8 9.1 0.0002 39.8 12.2 120 163-286 43-179 (336)
387 PLN02746 hydroxymethylglutaryl 86.7 41 0.00089 35.4 16.9 138 97-257 122-270 (347)
388 PRK05848 nicotinate-nucleotide 86.7 4 8.7E-05 41.4 9.3 67 243-312 192-259 (273)
389 PRK13957 indole-3-glycerol-pho 86.7 38 0.00082 34.1 16.1 169 97-316 61-236 (247)
390 cd00452 KDPG_aldolase KDPG and 86.6 6.5 0.00014 37.0 10.2 67 243-314 107-175 (190)
391 COG0167 PyrD Dihydroorotate de 86.6 14 0.00031 38.3 13.3 139 103-260 116-270 (310)
392 TIGR02090 LEU1_arch isopropylm 86.5 38 0.00082 35.5 16.6 154 78-257 51-213 (363)
393 PRK00507 deoxyribose-phosphate 86.5 29 0.00063 34.1 14.9 144 150-310 59-208 (221)
394 PRK13813 orotidine 5'-phosphat 86.5 30 0.00066 32.9 17.3 149 141-316 46-198 (215)
395 PRK09140 2-dehydro-3-deoxy-6-p 86.4 23 0.0005 34.3 14.0 143 151-315 13-184 (206)
396 TIGR01334 modD putative molybd 86.4 14 0.0003 37.8 12.9 146 78-263 109-266 (277)
397 TIGR01927 menC_gamma/gm+ o-suc 86.3 9 0.0002 39.0 11.7 101 162-283 110-212 (307)
398 cd02812 PcrB_like PcrB_like pr 86.3 27 0.00058 34.5 14.5 183 99-316 15-210 (219)
399 PF02679 ComA: (2R)-phospho-3- 86.1 2.2 4.7E-05 42.8 6.9 117 137-276 54-196 (244)
400 PRK00043 thiE thiamine-phospha 86.0 7.4 0.00016 36.4 10.2 96 78-188 94-191 (212)
401 PRK07896 nicotinate-nucleotide 85.9 4.1 8.9E-05 41.8 8.9 66 244-312 210-276 (289)
402 cd04722 TIM_phosphate_binding 85.9 24 0.00052 31.4 13.1 127 165-312 12-145 (200)
403 TIGR02090 LEU1_arch isopropylm 85.9 16 0.00034 38.3 13.4 200 102-329 28-237 (363)
404 KOG1606 Stationary phase-induc 85.8 5.3 0.00012 39.7 9.2 198 79-315 14-243 (296)
405 TIGR00034 aroFGH phospho-2-deh 85.6 15 0.00033 38.7 13.0 56 133-189 236-301 (344)
406 cd03318 MLE Muconate Lactonizi 85.6 9.7 0.00021 39.3 11.7 109 151-282 132-244 (365)
407 PF03328 HpcH_HpaI: HpcH/HpaI 85.4 10 0.00022 36.5 10.9 130 169-315 12-155 (221)
408 TIGR01304 IMP_DH_rel_2 IMP deh 85.4 3 6.6E-05 44.0 7.9 97 80-184 179-283 (369)
409 PRK03512 thiamine-phosphate py 85.4 37 0.00081 32.9 14.9 133 133-314 43-190 (211)
410 TIGR03326 rubisco_III ribulose 85.2 27 0.00058 37.6 15.0 119 141-273 134-258 (412)
411 cd08207 RLP_NonPhot Ribulose b 85.2 29 0.00063 37.3 15.1 128 141-281 133-264 (406)
412 PRK04452 acetyl-CoA decarbonyl 85.2 27 0.00058 36.4 14.5 36 239-275 277-312 (319)
413 PF01070 FMN_dh: FMN-dependent 85.0 7.8 0.00017 40.6 10.7 94 78-186 217-310 (356)
414 TIGR02708 L_lactate_ox L-lacta 85.0 5.7 0.00012 42.0 9.7 95 141-261 219-313 (367)
415 TIGR00973 leuA_bact 2-isopropy 85.0 8.8 0.00019 42.0 11.5 109 133-257 110-222 (494)
416 COG3836 HpcH 2,4-dihydroxyhept 84.9 47 0.001 33.6 17.2 202 80-326 7-254 (255)
417 COG0800 Eda 2-keto-3-deoxy-6-p 84.8 8.5 0.00018 37.9 10.1 118 151-314 16-138 (211)
418 PLN02428 lipoic acid synthase 84.8 57 0.0012 34.5 17.1 188 102-331 139-341 (349)
419 cd08209 RLP_DK-MTP-1-P-enolase 84.8 29 0.00063 37.1 14.9 120 141-274 114-239 (391)
420 COG4948 L-alanine-DL-glutamate 84.8 16 0.00035 37.8 12.9 120 163-307 143-266 (372)
421 COG3010 NanE Putative N-acetyl 84.7 11 0.00023 37.4 10.6 116 163-310 31-154 (229)
422 PLN03228 methylthioalkylmalate 84.7 16 0.00034 40.3 13.2 205 102-330 112-340 (503)
423 cd08213 RuBisCO_large_III Ribu 84.6 25 0.00055 37.8 14.4 119 141-273 121-245 (412)
424 PRK06543 nicotinate-nucleotide 84.5 4.2 9.1E-05 41.5 8.2 63 244-311 204-266 (281)
425 PLN02493 probable peroxisomal 84.5 4.2 9.1E-05 43.0 8.4 91 77-184 215-307 (367)
426 PRK05718 keto-hydroxyglutarate 84.5 31 0.00068 33.7 13.9 126 144-312 11-138 (212)
427 cd00429 RPE Ribulose-5-phospha 84.5 35 0.00075 31.7 15.6 167 102-315 18-199 (211)
428 TIGR03849 arch_ComA phosphosul 84.4 4.5 9.7E-05 40.4 8.2 106 137-261 41-155 (237)
429 PF03060 NMO: Nitronate monoox 84.3 5.2 0.00011 41.1 8.9 93 78-184 126-218 (330)
430 PRK06015 keto-hydroxyglutarate 84.3 25 0.00054 34.2 13.1 123 163-325 14-142 (201)
431 COG5016 Pyruvate/oxaloacetate 84.3 9.9 0.00022 41.0 11.0 276 102-432 34-324 (472)
432 PLN02591 tryptophan synthase 84.3 30 0.00065 34.7 14.0 101 159-272 10-124 (250)
433 PRK06106 nicotinate-nucleotide 84.2 4.3 9.2E-05 41.5 8.1 63 244-311 205-267 (281)
434 PLN02980 2-oxoglutarate decarb 84.1 9.3 0.0002 47.6 12.4 104 160-283 1087-1191(1655)
435 cd04737 LOX_like_FMN L-Lactate 84.0 6.6 0.00014 41.2 9.6 100 244-357 233-346 (351)
436 PRK07114 keto-hydroxyglutarate 83.9 21 0.00046 35.2 12.6 123 151-314 18-144 (222)
437 PRK13307 bifunctional formalde 83.9 61 0.0013 34.7 16.8 141 141-316 216-364 (391)
438 PLN02321 2-isopropylmalate syn 83.9 9.7 0.00021 43.1 11.4 109 133-257 203-316 (632)
439 cd04734 OYE_like_3_FMN Old yel 83.9 35 0.00076 35.4 14.8 87 100-187 145-251 (343)
440 TIGR02129 hisA_euk phosphoribo 83.7 31 0.00067 34.8 13.8 165 102-314 44-236 (253)
441 TIGR01182 eda Entner-Doudoroff 83.7 29 0.00063 33.8 13.3 122 163-324 18-145 (204)
442 PRK08999 hypothetical protein; 83.6 19 0.0004 36.2 12.4 129 128-307 166-305 (312)
443 cd07944 DRE_TIM_HOA_like 4-hyd 83.6 36 0.00078 34.1 14.3 148 102-275 26-176 (266)
444 PLN02979 glycolate oxidase 83.5 4.8 0.0001 42.6 8.4 93 77-184 214-306 (366)
445 COG1830 FbaB DhnA-type fructos 83.5 21 0.00045 36.4 12.5 154 103-291 50-213 (265)
446 cd00384 ALAD_PBGS Porphobilino 83.5 13 0.00028 38.7 11.2 167 92-284 41-264 (314)
447 PF01180 DHO_dh: Dihydroorotat 83.5 36 0.00079 34.1 14.4 180 133-329 75-292 (295)
448 cd02922 FCB2_FMN Flavocytochro 83.5 29 0.00062 36.4 14.0 83 243-329 224-323 (344)
449 PF00682 HMGL-like: HMGL-like 83.2 8.1 0.00018 37.2 9.3 155 79-257 47-210 (237)
450 COG0159 TrpA Tryptophan syntha 83.2 21 0.00044 36.4 12.4 153 135-302 4-166 (265)
451 PRK00915 2-isopropylmalate syn 83.1 17 0.00038 39.9 12.8 109 133-257 113-225 (513)
452 PF02581 TMP-TENI: Thiamine mo 83.1 6.9 0.00015 36.5 8.5 101 69-184 76-176 (180)
453 PRK02506 dihydroorotate dehydr 83.0 59 0.0013 33.3 19.8 178 133-328 74-288 (310)
454 cd08148 RuBisCO_large Ribulose 83.0 41 0.00088 35.7 15.0 126 142-281 118-250 (366)
455 PRK13111 trpA tryptophan synth 82.9 42 0.0009 33.7 14.5 109 153-273 14-136 (258)
456 cd08212 RuBisCO_large_I Ribulo 82.9 35 0.00075 37.3 14.7 127 141-281 135-269 (450)
457 PRK09016 quinolinate phosphori 82.7 7.6 0.00017 40.0 9.3 63 244-311 219-281 (296)
458 COG0113 HemB Delta-aminolevuli 82.4 30 0.00065 36.1 13.2 168 91-282 50-275 (330)
459 TIGR01036 pyrD_sub2 dihydrooro 82.2 67 0.0015 33.4 19.3 158 90-259 58-243 (335)
460 PRK05500 bifunctional orotidin 82.2 45 0.00098 36.6 15.4 153 149-329 87-262 (477)
461 cd04726 KGPDC_HPS 3-Keto-L-gul 82.1 7.9 0.00017 36.1 8.5 77 93-186 110-187 (202)
462 PRK08072 nicotinate-nucleotide 82.1 10 0.00022 38.6 9.8 62 245-311 200-261 (277)
463 COG0191 Fba Fructose/tagatose 81.9 67 0.0014 33.2 23.3 213 81-327 10-251 (286)
464 TIGR00007 phosphoribosylformim 81.9 6.2 0.00014 37.8 7.9 82 241-328 29-118 (230)
465 PRK00278 trpC indole-3-glycero 81.8 4.7 0.0001 40.2 7.3 115 224-345 49-173 (260)
466 TIGR01036 pyrD_sub2 dihydrooro 81.8 9.4 0.0002 39.6 9.7 141 102-260 157-317 (335)
467 PLN03228 methylthioalkylmalate 81.8 14 0.0003 40.7 11.4 110 133-258 202-316 (503)
468 PLN02716 nicotinate-nucleotide 81.8 9.2 0.0002 39.6 9.5 64 244-311 214-291 (308)
469 PRK09389 (R)-citramalate synth 81.8 14 0.00031 40.3 11.5 132 103-257 80-215 (488)
470 PF02574 S-methyl_trans: Homoc 81.5 16 0.00034 36.9 11.0 163 164-328 40-238 (305)
471 PRK01033 imidazole glycerol ph 81.4 30 0.00065 34.3 12.8 146 78-261 63-227 (258)
472 CHL00040 rbcL ribulose-1,5-bis 81.2 42 0.00092 36.9 14.7 128 142-281 158-292 (475)
473 cd00951 KDGDH 5-dehydro-4-deox 81.1 9.2 0.0002 38.5 9.1 190 106-332 31-224 (289)
474 COG0106 HisA Phosphoribosylfor 81.1 27 0.0006 35.1 12.2 175 100-315 35-226 (241)
475 PRK00915 2-isopropylmalate syn 81.0 25 0.00055 38.6 13.1 151 102-274 32-186 (513)
476 cd08208 RLP_Photo Ribulose bis 81.0 47 0.001 36.0 14.8 126 141-281 150-281 (424)
477 PRK04208 rbcL ribulose bisopho 81.0 49 0.0011 36.3 15.0 119 142-273 151-275 (468)
478 PRK07896 nicotinate-nucleotide 80.9 36 0.00078 35.0 13.3 146 77-262 124-276 (289)
479 COG0119 LeuA Isopropylmalate/h 80.9 16 0.00035 39.2 11.3 107 133-257 110-220 (409)
480 PRK15129 L-Ala-D/L-Glu epimera 80.9 44 0.00096 34.1 14.1 79 160-262 126-204 (321)
481 cd04731 HisF The cyclase subun 80.9 4.2 9.2E-05 39.5 6.5 82 241-328 28-117 (243)
482 TIGR01306 GMP_reduct_2 guanosi 80.7 32 0.00069 35.9 13.0 141 134-310 67-227 (321)
483 cd03320 OSBS o-Succinylbenzoat 80.7 20 0.00044 35.3 11.3 122 166-311 85-207 (263)
484 cd07938 DRE_TIM_HMGL 3-hydroxy 80.6 45 0.00098 33.6 13.8 152 102-274 26-186 (274)
485 PRK02615 thiamine-phosphate py 80.5 9.2 0.0002 40.2 9.1 97 78-189 230-326 (347)
486 PRK02083 imidazole glycerol ph 80.5 4.2 9E-05 39.9 6.3 72 240-316 30-109 (253)
487 PF01180 DHO_dh: Dihydroorotat 80.5 9.8 0.00021 38.2 9.1 152 91-261 100-274 (295)
488 TIGR03586 PseI pseudaminic aci 80.5 43 0.00092 35.0 13.9 69 79-147 80-158 (327)
489 PRK08508 biotin synthase; Prov 80.5 53 0.0011 33.0 14.3 126 105-257 52-183 (279)
490 COG1902 NemA NADH:flavin oxido 80.4 53 0.0012 34.7 14.7 139 168-315 152-323 (363)
491 COG3142 CutC Uncharacterized p 80.4 29 0.00063 34.8 12.0 169 172-355 15-198 (241)
492 PRK08645 bifunctional homocyst 80.4 64 0.0014 36.3 16.2 158 107-289 54-234 (612)
493 PRK04128 1-(5-phosphoribosyl)- 80.4 22 0.00047 34.9 11.2 173 102-314 36-215 (228)
494 PRK13585 1-(5-phosphoribosyl)- 80.3 11 0.00025 36.3 9.2 123 167-311 34-170 (241)
495 PRK15072 bifunctional D-altron 80.3 14 0.0003 39.1 10.5 112 163-282 127-262 (404)
496 cd07940 DRE_TIM_IPMS 2-isoprop 80.3 28 0.00062 34.5 12.2 149 102-275 26-181 (268)
497 PRK07807 inosine 5-monophospha 80.2 12 0.00027 40.8 10.3 162 167-349 167-349 (479)
498 COG2185 Sbm Methylmalonyl-CoA 80.2 8.1 0.00018 35.9 7.6 33 295-327 107-139 (143)
499 TIGR02660 nifV_homocitr homoci 80.0 10 0.00022 39.7 9.3 199 102-328 29-237 (365)
500 TIGR00510 lipA lipoate synthas 79.9 77 0.0017 32.6 17.5 188 102-329 100-299 (302)
No 1
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=100.00 E-value=1.7e-73 Score=568.48 Aligned_cols=286 Identities=36% Similarity=0.557 Sum_probs=269.6
Q ss_pred ccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE
Q 012815 75 LSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (456)
Q Consensus 75 ~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI 154 (456)
+.++++||++|++++++++||+||++|||++|++||+++|+||+++|++++|+||.+++|++||++++++|++++++||+
T Consensus 3 ~~~~~~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPvi 82 (292)
T PRK11320 3 HSAGARFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLL 82 (292)
T ss_pred CCHHHHHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEE
Confidence 45678899999999999999999999999999999999999999999778999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~ 234 (456)
||+|+|||++.|++++|++|+++||+|||||||++||+|||..||+++|.+|+++||+||++|++ ++||+||||||++
T Consensus 83 aD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~--~~d~~IiARTDa~ 160 (292)
T PRK11320 83 VDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART--DPDFVIMARTDAL 160 (292)
T ss_pred EECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc--CCCeEEEEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999987 5899999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012815 235 QALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (456)
Q Consensus 235 ~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll 314 (456)
...++||||+|+++|++||||+||+|++.+.+++++++++++ +|+++|++++ +++|.++.+||+++||++|+||++++
T Consensus 161 ~~~g~deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~-~Pl~~n~~~~-~~~p~~s~~~L~~lGv~~v~~~~~~~ 238 (292)
T PRK11320 161 AVEGLDAAIERAQAYVEAGADMIFPEAMTELEMYRRFADAVK-VPILANITEF-GATPLFTTEELASAGVAMVLYPLSAF 238 (292)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcC-CCEEEEeccC-CCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 888999999999999999999999999999999999999998 7999999986 67899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCC--CCCCCCCCHHHHHHhcCcccHH-HHHHccccc
Q 012815 315 GVSVRAMQDALTAIKGGRI--PSPGSMPSFQEIKETLGFNTYY-EEEKRYATS 364 (456)
Q Consensus 315 ~aa~~A~~~~l~~i~~g~~--~~~~~~~~~~e~~~lvg~~~~~-~~e~~y~~~ 364 (456)
++++++|+++++.|++.+. ...+.+++|+|+++++||++|. .+|++|...
T Consensus 239 ~aa~~a~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 291 (292)
T PRK11320 239 RAMNKAAENVYEAIRRDGTQKAVVDTMQTREELYEYLGYHAYEQKLDALFAQK 291 (292)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchhccCCHHHHHHhcCcHHHHHHHHHHhccC
Confidence 9999999999999986443 2455688999999999999998 678888654
No 2
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=100.00 E-value=1.6e-73 Score=567.11 Aligned_cols=281 Identities=38% Similarity=0.642 Sum_probs=267.6
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeC
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~ 157 (456)
+++||++|++++++++||+||++||+++|++||+++|+||+++|+ ++|+||.+++|++||++++++|++++++||+||+
T Consensus 2 ~~~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~-~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~ 80 (285)
T TIGR02317 2 GKAFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAA-SLGLPDLGITTLDEVAEDARRITRVTDLPLLVDA 80 (285)
T ss_pred hHHHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEEC
Confidence 578999999999999999999999999999999999999999997 6999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcc
Q 012815 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL 237 (456)
Q Consensus 158 DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~ 237 (456)
|+|||++.||+++|++|+++||+|||||||++||+|||+.||+++|.+++++||+||++|+. ++||+||||||++...
T Consensus 81 d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~--~~d~~IiARTDa~~~~ 158 (285)
T TIGR02317 81 DTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR--DEDFVIIARTDARAVE 158 (285)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc--CCCEEEEEEcCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999997 4799999999999888
Q ss_pred cHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHH
Q 012815 238 SLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVS 317 (456)
Q Consensus 238 ~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa 317 (456)
++||||+|+++|++||||+||+|++.+.+++++++++++ +|+++|++++ +++|.++.+||+++||++|+||+++++++
T Consensus 159 g~deAI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i~-~Pl~~n~~~~-~~~p~~s~~eL~~lGv~~v~~~~~~~~aa 236 (285)
T TIGR02317 159 GLDAAIERAKAYVEAGADMIFPEALTSLEEFRQFAKAVK-VPLLANMTEF-GKTPLFTADELREAGYKMVIYPVTAFRAM 236 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcC-CCEEEEeccC-CCCCCCCHHHHHHcCCcEEEEchHHHHHH
Confidence 999999999999999999999999999999999999998 7999999986 67899999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCCC-CCCCCCCHHHHHHhcCcccHHHHHHcccc
Q 012815 318 VRAMQDALTAIKG-GRIP-SPGSMPSFQEIKETLGFNTYYEEEKRYAT 363 (456)
Q Consensus 318 ~~A~~~~l~~i~~-g~~~-~~~~~~~~~e~~~lvg~~~~~~~e~~y~~ 363 (456)
+++|++++..|++ |... .++.+.+|+|+++++||++|.++|++|..
T Consensus 237 ~~a~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~g~~~~~~~~~~~~~ 284 (285)
T TIGR02317 237 NKAAEAVYNEIKEHGTQKGSLDDMQTRKELYELIGYYDYEKKDDSIFK 284 (285)
T ss_pred HHHHHHHHHHHHHcCCcccccccCCCHHHHHHHcChHHHHHHHHHHhc
Confidence 9999999999986 4432 45678899999999999999999999863
No 3
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.9e-74 Score=563.77 Aligned_cols=282 Identities=39% Similarity=0.619 Sum_probs=271.2
Q ss_pred cHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEE
Q 012815 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (456)
Q Consensus 76 ~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIa 155 (456)
+++++||++|++++++++||+||++||++++++||+++|+||+++|+ ++|+||.+.+|++|+++++++|++++++||+|
T Consensus 5 ~~~~~fR~l~~~~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~-slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~v 83 (289)
T COG2513 5 EPGAAFRALHASGDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAA-SLGLPDLGITTLDEVLADARRITDAVDLPVLV 83 (289)
T ss_pred cHHHHHHHHHhCCCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHH-hcCCCccccccHHHHHHHHHHHHhhcCCceEE
Confidence 47889999999999999999999999999999999999999999997 69999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh
Q 012815 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ 235 (456)
Q Consensus 156 D~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~ 235 (456)
|+|+|||++.|+++||++++++|++|||||||++||+|||..||+|+|++||++||+||++++.+ ++|+|+||||++.
T Consensus 84 D~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~--~~fvi~ARTda~~ 161 (289)
T COG2513 84 DIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRD--PDFVIIARTDALL 161 (289)
T ss_pred eccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccC--CCeEEEeehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 8999999999999
Q ss_pred cccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 236 ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 236 ~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
..++|+||+|+++|.|||||+||+|++.+.+++++|+++++ +|+++||++. +++|.+|.++|+++||++||||++.++
T Consensus 162 ~~~ld~AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~-~pl~~N~t~~-g~tp~~~~~~L~~~Gv~~V~~~~~~~r 239 (289)
T COG2513 162 VEGLDDAIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP-VPLPANITEF-GKTPLLTVAELAELGVKRVSYGLTAFR 239 (289)
T ss_pred hccHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC-CCeeeEeecc-CCCCCcCHHHHHhcCceEEEECcHHHH
Confidence 99999999999999999999999999999999999999999 8999999998 678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCcccHHHHHHccc
Q 012815 316 VSVRAMQDALTAIKGGRIP--SPGSMPSFQEIKETLGFNTYYEEEKRYA 362 (456)
Q Consensus 316 aa~~A~~~~l~~i~~g~~~--~~~~~~~~~e~~~lvg~~~~~~~e~~y~ 362 (456)
++++|++++++.|+++++. ..+.|.+.+|++++++|.+|.+.+.+|.
T Consensus 240 aa~~a~~~~~~~i~~~gt~~~~~d~m~~r~~l~~~~~y~~~~~~~~~~~ 288 (289)
T COG2513 240 AALKAAEQAAREIRREGTQANVLDKMQTRKELYDLINYYDYEAKDDELF 288 (289)
T ss_pred HHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhhcHHHHHHHHHhhc
Confidence 9999999999999876543 3567889999999999999999999875
No 4
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=100.00 E-value=5.5e-73 Score=565.16 Aligned_cols=286 Identities=40% Similarity=0.666 Sum_probs=269.7
Q ss_pred cHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEE
Q 012815 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (456)
Q Consensus 76 ~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIa 155 (456)
.++++||++|++++++++||+||++|||++|++||+++|+||++++++++|+||.+.+|++||+.++++|++++++||+|
T Consensus 3 ~~~~~~r~l~~~~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~a 82 (294)
T TIGR02319 3 TKARTFRELMNAPEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIM 82 (294)
T ss_pred cHHHHHHHHhcCCCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEE
Confidence 46789999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh
Q 012815 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ 235 (456)
Q Consensus 156 D~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~ 235 (456)
|+|+|||++.|++++|++|+++||+|||||||++||+|||.+||+++|.+|+++||+||++|+++ +||+||||||++.
T Consensus 83 D~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~--~d~~I~ARTDa~~ 160 (294)
T TIGR02319 83 DADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEARED--EDFTIIARTDARE 160 (294)
T ss_pred ECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccC--CCeEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999975 7999999999998
Q ss_pred cccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 236 ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 236 ~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
..++||+|+|+++|++||||+||+|++.+.+++++++++++ .|+++||+.+ +++|.++.+||+++||++|+||+++++
T Consensus 161 ~~g~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~-~P~~~nv~~~-~~~p~~s~~eL~~lG~~~v~~~~~~~~ 238 (294)
T TIGR02319 161 SFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEID-APLLANMVEG-GKTPWLTTKELESIGYNLAIYPLSGWM 238 (294)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcC-CCeeEEEEec-CCCCCCCHHHHHHcCCcEEEEcHHHHH
Confidence 88999999999999999999999999999999999999998 5988999986 679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCCC-CCCCC---CCHHHHHHhcCcccHHHHHHcccccc
Q 012815 316 VSVRAMQDALTAIKG-GRIP-SPGSM---PSFQEIKETLGFNTYYEEEKRYATSM 365 (456)
Q Consensus 316 aa~~A~~~~l~~i~~-g~~~-~~~~~---~~~~e~~~lvg~~~~~~~e~~y~~~~ 365 (456)
+++.||++++++|++ |... ..+.+ .+|+|+++++|+++|+++|++|.+..
T Consensus 239 aa~~a~~~~~~~l~~~G~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~ 293 (294)
T TIGR02319 239 AAASVLRKLFTELREAGTTQKFWDDMGLKMSFAELFEVFEYSKISELEARFVRDQ 293 (294)
T ss_pred HHHHHHHHHHHHHHHcCCcccccccccccCCHHHHHHHhChHHHHHHHHhhcccC
Confidence 999999999999985 4432 23343 79999999999999999999998754
No 5
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=100.00 E-value=4.3e-70 Score=543.86 Aligned_cols=282 Identities=32% Similarity=0.487 Sum_probs=261.6
Q ss_pred cHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEE
Q 012815 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (456)
Q Consensus 76 ~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIa 155 (456)
.++++||++|++++++++|||||++||+++|++||+++|+||+++|++ +|+||.+.+|++||++++++|++++++||+|
T Consensus 2 ~~~~~lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~s-lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~a 80 (290)
T TIGR02321 2 TKNQALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSAS-YAVPDANILSMSTHLEMMRAIASTVSIPLIA 80 (290)
T ss_pred ChHHHHHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHH-CCCCCcccCCHHHHHHHHHHHHhccCCCEEE
Confidence 457899999999999999999999999999999999999999999976 8999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCC-CC-ccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecch
Q 012815 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHT-RG-RKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS 233 (456)
Q Consensus 156 D~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~-~g-k~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA 233 (456)
|+|+|||++.|++++|++|+++||+|||||||.+||+|||. .| ++++|.+|+++||+||++++. ++||+||||||+
T Consensus 81 D~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~--~~d~~I~ARTDa 158 (290)
T TIGR02321 81 DIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARA--DRDFVVIARVEA 158 (290)
T ss_pred ECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCC--CCCEEEEEEecc
Confidence 99999999889999999999999999999999999999997 56 789999999999999999975 589999999999
Q ss_pred h-hcccHHHHHHHHHHhHhcCCCEEEecc-CCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcC-CCEEecc
Q 012815 234 R-QALSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLVAYP 310 (456)
Q Consensus 234 ~-~~~~ldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elG-v~~Vs~p 310 (456)
+ ...++||||+|+++|++||||+||+|+ +.+.+++++++++++ .|+++++++ +++|.++.++|+++| |++||||
T Consensus 159 ~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~-~p~pv~~~~--~~~p~~~~~~l~~lg~~~~v~~g 235 (290)
T TIGR02321 159 LIAGLGQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP-GKVPLVLVP--TAYPQLTEADIAALSKVGIVIYG 235 (290)
T ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC-CCCCeEEec--CCCCCCCHHHHHHhcCCcEEEEC
Confidence 8 567899999999999999999999998 599999999999987 466666654 578999999999999 9999999
Q ss_pred chHHHHHHHHHHHHHHHHHc-CCCC-CCCCCCCHHHHHHhcCcccHHHHHHcccc
Q 012815 311 LSLIGVSVRAMQDALTAIKG-GRIP-SPGSMPSFQEIKETLGFNTYYEEEKRYAT 363 (456)
Q Consensus 311 ~~ll~aa~~A~~~~l~~i~~-g~~~-~~~~~~~~~e~~~lvg~~~~~~~e~~y~~ 363 (456)
++++++++++|+++++.|++ |... ..+.+.+|+|+++++||++|.++|++|.+
T Consensus 236 ~~~~~aa~~a~~~~~~~i~~~g~~~~~~~~~~~~~e~~~l~g~~~~~~~e~~~~~ 290 (290)
T TIGR02321 236 NHAIRAAVGAVREVFARIRRDGGIREVDAALPSVKEIIELQGDERMRAVEARYLK 290 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcccccccCCCHHHHHHHhChHHHHHHHHHhcC
Confidence 99999999999999999986 4443 45678899999999999999999999964
No 6
>PRK15063 isocitrate lyase; Provisional
Probab=100.00 E-value=2.8e-69 Score=557.01 Aligned_cols=316 Identities=26% Similarity=0.364 Sum_probs=282.7
Q ss_pred ecccchhhhhccc-CCCCcccccccccC-------CCccccc--cccHHHHHHHHHhCCCceeecccCChHHHHHHHHhC
Q 012815 40 NKTNTNTLLLNTA-TNPGTINRTRVYRK-------NSTGVEA--CLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSG 109 (456)
Q Consensus 40 ~~~~~~~~~~~~~-~~pr~~~~~R~y~~-------~s~~~~~--a~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aG 109 (456)
+++++..++.+|| ++|||+|++|+||+ ||++++| +...+++||++|++++++++|||||+++|++++++|
T Consensus 4 ~~~~~~~~~~~~w~~~~r~~~i~r~y~a~~v~~lrgs~~~~~~~a~~~a~kLr~lL~~~~~~~~~Ga~d~~~A~q~~~aG 83 (428)
T PRK15063 4 TRTQQIEELEKDWATNPRWKGITRPYSAEDVVRLRGSVQIEHTLARRGAEKLWELLHGEPYVNALGALTGNQAVQQVKAG 83 (428)
T ss_pred cHHHHHHHHHHHhccCCccccCcCCCCHHHHHHHcCCCCCCCchHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHhC
Confidence 4567777888888 89999999999995 9999999 688899999999999999999999999999999999
Q ss_pred CcEEEecchHHhh----hhcccCCCCCCCHHHHHHHHHHHHhccC------------------CcEEEeCCCCCCCHHHH
Q 012815 110 FSFCFTSGFSISA----ARLALPDTGFISYGEMVDQGQLITQAVS------------------IPVIGDGDNGYGNAMNV 167 (456)
Q Consensus 110 fdAI~vSG~avSa----s~lG~PD~~~lt~~Eml~~~r~I~ra~~------------------iPVIaD~DtGYG~~~nv 167 (456)
|++||+|||++|+ +.+|+||.+++|+++|+..+++|++++. +|||||+|+|||++.||
T Consensus 84 f~AIy~SG~~vAa~~~~s~~g~PD~~l~p~~~v~~~v~~I~~a~~~~d~~~~~~~~~~~~d~~~PIiADaDtGfGg~~nv 163 (428)
T PRK15063 84 LKAIYLSGWQVAADANLAGQMYPDQSLYPANSVPAVVKRINNALRRADQIQWSEGDKGYIDYFAPIVADAEAGFGGVLNA 163 (428)
T ss_pred CCEEEECHHHHhcCcccccCCCCCcccCCHHHHHHHHHHHHHHHHHhhhHhhhhcccccccCCCCeEEECCCCCCCcHHH
Confidence 9999999999997 4689999999999999999999998863 99999999999999999
Q ss_pred HHHHHHHHHhCccEEEeCCCCC-CCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhc----------
Q 012815 168 KRTVKGYIKAGFAGIILEDQVS-PKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA---------- 236 (456)
Q Consensus 168 ~rtVk~l~~AGaaGI~IEDq~~-pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~---------- 236 (456)
++++|+|+++||+|||||||.+ ||||||++||.|+|.+|+++||+||+.|++.+|.+++||||||++++
T Consensus 164 ~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~r 243 (428)
T PRK15063 164 FELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDER 243 (428)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccccccccccc
Confidence 9999999999999999999985 89999999999999999999999999999999999999999999764
Q ss_pred ------------------ccHHHHHHHHHHhHhcCCCEEEecc-CCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCC--
Q 012815 237 ------------------LSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPLVPKMANMLEGGGKTPILN-- 295 (456)
Q Consensus 237 ------------------~~ldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt-- 295 (456)
.++|+||+|+++|++ |||+||+|+ +++.+++++|++.++ .+.|.|++.. +++|.++
T Consensus 244 D~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~-~~~P~~~lay-n~sPsfnW~ 320 (428)
T PRK15063 244 DRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETSTPDLEEARRFAEAIH-AKFPGKLLAY-NCSPSFNWK 320 (428)
T ss_pred ccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhc-ccCccceeec-CCCCCcccc
Confidence 579999999999999 999999995 899999999999987 4456788876 6899999
Q ss_pred -----------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHccccc
Q 012815 296 -----------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATS 364 (456)
Q Consensus 296 -----------~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~~g~~~~~~~~~~~~e~~~lvg~~~~~~~e~~y~~~ 364 (456)
.+||++|||+.++||++.++++..+|.+.++.+++.+ |..|-|+++ .+|...+..|...
T Consensus 321 ~~~~~~~~~~f~~eL~~~Gy~~~~~~la~~ha~~~a~~~~a~~~~~~G------m~ay~~~Q~----~e~~~~~~g~~~~ 390 (428)
T PRK15063 321 KNLDDATIAKFQRELGAMGYKFQFITLAGFHSLNYSMFDLAHGYAREG------MAAYVELQE----AEFAAEERGYTAV 390 (428)
T ss_pred cccCHHHHHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHHHHHhc------cHHHHHHHH----HHHHHHhcCccee
Confidence 8999999999999999999999999999999998642 344544432 2344445555555
Q ss_pred ccCc
Q 012815 365 MRRL 368 (456)
Q Consensus 365 ~~~~ 368 (456)
.+|.
T Consensus 391 ~hq~ 394 (428)
T PRK15063 391 KHQR 394 (428)
T ss_pred echh
Confidence 5543
No 7
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=100.00 E-value=1.8e-62 Score=488.16 Aligned_cols=265 Identities=26% Similarity=0.350 Sum_probs=243.3
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHh---------CCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCC
Q 012815 81 LRQILELPGVHQGPACFDALSAKLVEKS---------GFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSI 151 (456)
Q Consensus 81 Lr~ll~~~~~lv~pgayDalSArl~e~a---------GfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~i 151 (456)
||++|++++++++||+||++||+++|++ ||+++|+||+++|+ ++|+||.+.+|++||++++++|++++++
T Consensus 1 lr~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~-s~G~pD~~~~~~~e~~~~~~~I~~a~~~ 79 (285)
T TIGR02320 1 LRQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDST-SRGVPDIEEASWTQRLDVVEFMFDVTTK 79 (285)
T ss_pred ChHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHH-HCCCCCcCcCCHHHHHHHHHHHHhhcCC
Confidence 6899999999999999999999999999 99999999999995 5999999999999999999999999999
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCc---cccCHHHHHHHHHHHHHHhHhhCCCeEEE
Q 012815 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGR---KVVSREEAVMRIKAAVDARKESGSDIVIV 228 (456)
Q Consensus 152 PVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk---~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi 228 (456)
||++|+|+| |++.+++++|++++++||+|||||||.+||+|||.+++ .++|.+|+++||+|+++++. +++|+||
T Consensus 80 Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~--~~~~~Ii 156 (285)
T TIGR02320 80 PIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQT--TEDFMII 156 (285)
T ss_pred CEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhcc--CCCeEEE
Confidence 999999999 99999999999999999999999999999999999887 79999999999999999975 5799999
Q ss_pred Eecchhh-cccHHHHHHHHHHhHhcCCCEEEecc-CCCHHHHHHHHHhCCC----CceeeeeeccCCCCCCCCHHHHHhc
Q 012815 229 ARTDSRQ-ALSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPL----VPKMANMLEGGGKTPILNPLELEEL 302 (456)
Q Consensus 229 ARTDA~~-~~~ldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~~v~~----vP~~~N~~~~~g~tp~lt~~eL~el 302 (456)
||||++. ..+++|||+|+++|++||||+||+++ +++.+++++++++++. +|+++| ++.+|.++.+||+++
T Consensus 157 ARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~----~~~~~~~~~~eL~~l 232 (285)
T TIGR02320 157 ARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIV----PTSYYTTPTDEFRDA 232 (285)
T ss_pred EecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEe----cCCCCCCCHHHHHHc
Confidence 9999974 56899999999999999999999997 6999999999998752 455433 245677899999999
Q ss_pred CCCEEeccchHHHHHHHHHHHHHHHHHc-CCCC-CCCCCCCHHHHHHhcCccc
Q 012815 303 GFKLVAYPLSLIGVSVRAMQDALTAIKG-GRIP-SPGSMPSFQEIKETLGFNT 353 (456)
Q Consensus 303 Gv~~Vs~p~~ll~aa~~A~~~~l~~i~~-g~~~-~~~~~~~~~e~~~lvg~~~ 353 (456)
||++||||++++++++++|+++++++++ |... ..+.+.+|+|+++++||++
T Consensus 233 G~~~v~~~~~~~~aa~~a~~~~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 285 (285)
T TIGR02320 233 GISVVIYANHLLRAAYAAMQQVAERILEHGRLVEVEDKCAPIKEIFRLIPGTE 285 (285)
T ss_pred CCCEEEEhHHHHHHHHHHHHHHHHHHHHcCCccccccccCCHHHHHHhcCCCC
Confidence 9999999999999999999999999986 4443 3456799999999999974
No 8
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=100.00 E-value=1.3e-62 Score=478.08 Aligned_cols=235 Identities=46% Similarity=0.688 Sum_probs=209.1
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCC
Q 012815 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (456)
Q Consensus 81 Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtG 160 (456)
||+||++++++++||+||++|||++|++||+++|+||+++|++ +|+||.+.+|++||++++++|++++++||+||+|+|
T Consensus 1 fr~L~~~~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s-~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~G 79 (238)
T PF13714_consen 1 FRQLHEPGKPLVLPNVWDALSARLAERAGFDAIATSGAGVAAS-LGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTG 79 (238)
T ss_dssp HHHHHHSSSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHH-TTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTT
T ss_pred ChhhhcCCCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHH-cCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccc
Confidence 7898888899999999999999999999999999999999976 599999999999999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh--cc
Q 012815 161 YGN-AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ--AL 237 (456)
Q Consensus 161 YG~-~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~--~~ 237 (456)
||+ +.|++++|++|+++||+||||||| +||| .+++++|.+|+++||+||++|+++ ++|+||||||++. ..
T Consensus 80 yG~~~~~v~~tv~~~~~aG~agi~IEDq----~~~~-~~~~l~~~ee~~~kI~Aa~~a~~~--~~~~I~ARTDa~~~~~~ 152 (238)
T PF13714_consen 80 YGNDPENVARTVRELERAGAAGINIEDQ----RCGH-GGKQLVSPEEMVAKIRAAVDARRD--PDFVIIARTDAFLRAEE 152 (238)
T ss_dssp SSSSHHHHHHHHHHHHHCT-SEEEEESB----STTT-STT-B--HHHHHHHHHHHHHHHSS--TTSEEEEEECHHCHHHH
T ss_pred cCchhHHHHHHHHHHHHcCCcEEEeecc----ccCC-CCCceeCHHHHHHHHHHHHHhccC--CeEEEEEeccccccCCC
Confidence 999 999999999999999999999999 8999 889999999999999999999986 5699999999975 78
Q ss_pred cHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHH
Q 012815 238 SLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVS 317 (456)
Q Consensus 238 ~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa 317 (456)
++||+|+|+++|.+||||+||+|++.+.+++++++++++ +| +|++..++ .++.+||+++||++|+||+++++++
T Consensus 153 ~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~-~P--l~v~~~~~---~~~~~eL~~lGv~~v~~~~~~~~aa 226 (238)
T PF13714_consen 153 GLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVD-GP--LNVNPGPG---TLSAEELAELGVKRVSYGNSLLRAA 226 (238)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHS-SE--EEEETTSS---SS-HHHHHHTTESEEEETSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcC-CC--EEEEcCCC---CCCHHHHHHCCCcEEEEcHHHHHHH
Confidence 999999999999999999999999999999999999986 56 55554322 3799999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 012815 318 VRAMQDALTAIK 329 (456)
Q Consensus 318 ~~A~~~~l~~i~ 329 (456)
+++|++++++|+
T Consensus 227 ~~a~~~~~~~il 238 (238)
T PF13714_consen 227 MKAMRDAAEAIL 238 (238)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999874
No 9
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=100.00 E-value=6.7e-59 Score=452.50 Aligned_cols=240 Identities=47% Similarity=0.743 Sum_probs=226.8
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCC
Q 012815 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (456)
Q Consensus 81 Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtG 160 (456)
||++|++++++++|||||++||++++++||+++|+||++++++ +|+||++.+|++||+++++.|++++++||++|+|+|
T Consensus 1 ~r~l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s-~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G 79 (243)
T cd00377 1 LRALLESGGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAAS-LGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTG 79 (243)
T ss_pred ChhHHhCCCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHh-cCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCC
Confidence 6899999999999999999999999999999999999999865 699999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhc--cc
Q 012815 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA--LS 238 (456)
Q Consensus 161 YG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~--~~ 238 (456)
||+..++.+++++++++|++|||||||.+||+|||.+++.++|.||+++||++++++++.+ ++|+|+||||++.. .+
T Consensus 80 ~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~ 158 (243)
T cd00377 80 YGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIARTDALLAGEEG 158 (243)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEEcCchhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999866 79999999999876 79
Q ss_pred HHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHH
Q 012815 239 LEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSV 318 (456)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~ 318 (456)
++|+|+|+++|++||||+||++++.+.+++++++++.+ .|+++|+..+ ++ .++.+||+++||++|+||++++++++
T Consensus 159 ~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~-~Pl~~~~~~~-~~--~~~~~~l~~lG~~~v~~~~~~~~~a~ 234 (243)
T cd00377 159 LDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAPD-VPLNVNMTPG-GN--LLTVAELAELGVRRVSYGLALLRAAA 234 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcCC-CCEEEEecCC-CC--CCCHHHHHHCCCeEEEEChHHHHHHH
Confidence 99999999999999999999999999999999999977 6888776543 21 47999999999999999999999999
Q ss_pred HHHHHHHH
Q 012815 319 RAMQDALT 326 (456)
Q Consensus 319 ~A~~~~l~ 326 (456)
.+|+++++
T Consensus 235 ~a~~~~~~ 242 (243)
T cd00377 235 KAMREAAR 242 (243)
T ss_pred HHHHHHHh
Confidence 99999865
No 10
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=100.00 E-value=9.8e-48 Score=403.40 Aligned_cols=276 Identities=28% Similarity=0.339 Sum_probs=243.0
Q ss_pred hhhcccC-CCCcccccccccC-------CCccccc--cccHHHHHHHHHhCC----CceeecccCChHHHHHHHHhCCcE
Q 012815 47 LLLNTAT-NPGTINRTRVYRK-------NSTGVEA--CLSPAKSLRQILELP----GVHQGPACFDALSAKLVEKSGFSF 112 (456)
Q Consensus 47 ~~~~~~~-~pr~~~~~R~y~~-------~s~~~~~--a~~~a~~Lr~ll~~~----~~lv~pgayDalSArl~e~aGfdA 112 (456)
++++||. +|||+|++||||+ ||+++++ |...+++||++|+.. +++..+||||+.+|.+++++ |++
T Consensus 3 ~i~~~w~~~pR~~~i~RpYta~dVv~lRGs~~~~~~~s~~~a~kLw~ll~~~~~~~~~~~tlGAld~~qa~q~~ka-l~a 81 (527)
T TIGR01346 3 EIQKWWDTNPRWNGTTRPYTARDVADLRGSVIPEHYLSRRMAEKLWRALTQHGDNKTYSNTFGALDPVQASQMAKY-LDA 81 (527)
T ss_pred hhhhhhccCccccCCcCCCCHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhhhcCCceeeccccCHHHHHHHHHH-hhh
Confidence 6788995 9999999999995 9999665 788899999999855 78999999999999999999 999
Q ss_pred EEecchHHhhhh----cccCCCCCCCHHHHHHHHHHHHhc---------------------------cCCcEEEeCCCCC
Q 012815 113 CFTSGFSISAAR----LALPDTGFISYGEMVDQGQLITQA---------------------------VSIPVIGDGDNGY 161 (456)
Q Consensus 113 I~vSG~avSas~----lG~PD~~~lt~~Eml~~~r~I~ra---------------------------~~iPVIaD~DtGY 161 (456)
||+|||++|++. .++||.+.+|+++++..+++|.++ ..+||+||+|+||
T Consensus 82 IY~SGwq~Sa~~~~~~e~~PD~s~yp~~tVp~~V~~i~~aq~~hDr~q~~~~~~~~~~~r~~~~~~D~~iPIiaD~DtGy 161 (527)
T TIGR01346 82 IYLSGWQCSSTANTSNEPGPDLADYPADTVPNKVEHLFNAQLFHDRKQREARDTSVDNERSKTPYIDYLVPIVADGDAGF 161 (527)
T ss_pred eehhHHHHHhhhcccCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHhccccchhhhccccccccccceEEECCCCC
Confidence 999999999752 399999999999999999999776 5699999999999
Q ss_pred CCHHHHHHHHHHHHHhCccEEEeCCCC-CCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh-----
Q 012815 162 GNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ----- 235 (456)
Q Consensus 162 G~~~nv~rtVk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~----- 235 (456)
|+..+++++|++|+++||+|||||||. .+|+|||++||+|+|++|+++||+||+.|++.+|++|+||||||+.+
T Consensus 162 G~~~~v~~~vk~~ieaGAaGI~IEDq~~~~KkcGh~~gk~Lvp~~e~v~RI~AAr~Aad~~g~d~vI~ARTDA~~A~Lit 241 (527)
T TIGR01346 162 GGATAVFKLQKAFIERGAAGVHWEDQLSSEKKCGHMAGKVLIPVQEHVNRLVAARLAADIMGVPTLVVARTDAEAATLIT 241 (527)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEEecCcccccccc
Confidence 999999999999999999999999998 58999999999999999999999999999999999999999999910
Q ss_pred --------------------------------------------------------------------------------
Q 012815 236 -------------------------------------------------------------------------------- 235 (456)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (456)
T Consensus 242 S~iD~rDh~fI~G~tn~~~~~l~~~l~~a~a~~~~Gad~~~~e~~W~~~a~l~tf~eav~~~i~~~~~~~~~~~~~~~~~ 321 (527)
T TIGR01346 242 SDVDERDHPFITGATNPNLKPLADVLARAMASGKSGADLQAVEDEWMAMADLKLFSDCVVDGIKALNVSEKGRRLGEWMQ 321 (527)
T ss_pred ccCCcccchhhcCCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCccHHHHHHHHHhhccccchHHHHHHHHh
Confidence
Q ss_pred -----------------------------------------cccHHHHHHHHHHhHhcCCCEEEecc-CCCHHHHHHHHH
Q 012815 236 -----------------------------------------ALSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCE 273 (456)
Q Consensus 236 -----------------------------------------~~~ldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~ 273 (456)
..+++.||.|+.+|+.. ||+||+|. .|+.+++++|++
T Consensus 322 ~~~~~~~~s~~~~r~~A~~~~~~~~~fdwd~~Rt~EG~Y~~k~G~~~aI~R~~a~APy-aDliW~ET~~Pdl~~A~~Fa~ 400 (527)
T TIGR01346 322 QTNTGNVLSYYQAKELAEKLGISNLFWDWDLPRTREGFYRVKGGLEPAIARAKAFAPY-ADLIWMETSTPDLELAKKFAE 400 (527)
T ss_pred hcccccccchHHHHHHHHHhcCCCCcccCCCCcCCCcceeecCChHHHHHHHHhcCcc-ccEEEecCCCCCHHHHHHHHH
Confidence 01478899999999985 99999998 689999999997
Q ss_pred h----CCCCceeeeeeccCCCCCCCC-------------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 012815 274 I----SPLVPKMANMLEGGGKTPILN-------------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (456)
Q Consensus 274 ~----v~~vP~~~N~~~~~g~tp~lt-------------~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~~ 330 (456)
. +|+..+..|. +|.+. ..||.+|||+.-.+....+.+.-.+|.+..+..++
T Consensus 401 ~v~~~~P~k~LaYN~------SPSFNW~~~~~d~~~~~F~~~L~~lGy~~QfITLaG~H~~~~~~~~lA~~y~~ 468 (527)
T TIGR01346 401 GVKSKFPDQLLAYNL------SPSFNWSAHMEDDEIAKFIQELGDLGYKWQFITLAGFHSLALGMFDFAYDFAQ 468 (527)
T ss_pred HHHHHCCCCeEEecC------CCCccccccCCHHHHHHHHHHHHhcCceEEEEehHhhhhhHHHHHHHHHHHHH
Confidence 5 4544444554 34333 47899999999999998888888888888888864
No 11
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=100.00 E-value=3.3e-47 Score=387.03 Aligned_cols=311 Identities=26% Similarity=0.380 Sum_probs=258.4
Q ss_pred cchhhhhcccCCCCcccccccccC-------CCccccc--cccHHHHHHHHHhC---CCceeecccCChHHHHHHHHhCC
Q 012815 43 NTNTLLLNTATNPGTINRTRVYRK-------NSTGVEA--CLSPAKSLRQILEL---PGVHQGPACFDALSAKLVEKSGF 110 (456)
Q Consensus 43 ~~~~~~~~~~~~pr~~~~~R~y~~-------~s~~~~~--a~~~a~~Lr~ll~~---~~~lv~pgayDalSArl~e~aGf 110 (456)
+...++++||++|||+||+|+|++ ||++++| +...|.+||++|+. +..+...||||+..|..+.++|.
T Consensus 7 ~~~~~~~~w~~~~rw~~I~R~YsA~dVv~lrgs~~~~~~~a~~~A~kl~~ll~e~~~~~~~~tlGal~g~qa~Q~~kagl 86 (433)
T COG2224 7 QEEALEQEWWEDPRWKGIKRPYSAEDVVKLRGSVPIEYTLARLGAAKLWELLHELFKEKYVNTLGALTGGQAVQMAKAGI 86 (433)
T ss_pred HHHHHHHhhccCCCcccCCCCccHHHHHHHhCCCCcCccHHHHHHHHHHHHHHHhccccchhccccCCHHHHHHHHHhhh
Confidence 345688999999999999999996 9999998 66789999999987 77899999999999999999999
Q ss_pred cEEEecchHHhh--hhc--ccCCCCCCCHHHHHHHHHHHHhc--------------------cC--CcEEEeCCCCCCCH
Q 012815 111 SFCFTSGFSISA--ARL--ALPDTGFISYGEMVDQGQLITQA--------------------VS--IPVIGDGDNGYGNA 164 (456)
Q Consensus 111 dAI~vSG~avSa--s~l--G~PD~~~lt~~Eml~~~r~I~ra--------------------~~--iPVIaD~DtGYG~~ 164 (456)
++||+|||++|+ +.. .+||..+++.+.+...+++|.++ ++ +|||||+|.|||++
T Consensus 87 ~aiYlSGWqvaa~~n~~~~~~PDqs~Yp~~sVP~~V~rI~~al~~aD~~q~~~~~~~~~~~~~Dy~~PIiADadaGfGg~ 166 (433)
T COG2224 87 KAIYLSGWQVAADANLAGEMYPDQSLYPANSVPDVVKRINNALRRADQIQWSEGKGPGDRQAVDYFLPIVADAEAGFGGP 166 (433)
T ss_pred heEEeccceeeccccccCCCCCCcccCccccccHHHHHHHHHHHHHHHHHHHhccccccccccccccceeeccccCCCch
Confidence 999999999984 233 48999999999999998888642 22 89999999999999
Q ss_pred HHHHHHHHHHHHhCccEEEeCCCC-CCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhc-------
Q 012815 165 MNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA------- 236 (456)
Q Consensus 165 ~nv~rtVk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~------- 236 (456)
.++++..|+|+|+||+|||||||. ..|+|||++||.|||++|+++||.|++.|.+.||.+.+|+||||+.++
T Consensus 167 ~~~~~L~K~~IEaGaagiH~EDQ~a~~KkCGH~gGkVlVPt~e~i~rL~AaRla~Dvmgv~tvlvARTDa~aA~Lits~~ 246 (433)
T COG2224 167 LNAFELMKAMIEAGAAGVHFEDQLASEKKCGHLGGKVLVPTQEAIRRLNAARLAADVMGVPTILVARTDAEAADLITSDV 246 (433)
T ss_pred HHHHHHHHHHHHhCCceeehhhhcccccccccCCCeEeccHHHHHHHHHHHHHHHHHhCCCceEEEecchhhcccccccC
Confidence 999999999999999999999998 689999999999999999999999999999999999999999999753
Q ss_pred ---------------------ccHHHHHHHHHHhHhcCCCEEEecc-CCCHHHHHHHHHhCCC-CceeeeeeccCCCCCC
Q 012815 237 ---------------------LSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPL-VPKMANMLEGGGKTPI 293 (456)
Q Consensus 237 ---------------------~~ldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~ 293 (456)
.+++.+|+|+.+|+..| |+||+|. .|+.+++++|++.+.. .| -.|+.. +.+|.
T Consensus 247 D~~d~~fi~~~Rt~eG~y~~k~Gie~aI~r~lA~Apya-Dl~W~ET~~Pdle~ak~Fae~Ih~~~P--~~~LaY-N~SPS 322 (433)
T COG2224 247 DPSDGEFITGERTSEGFYRTKGGIEQAIARGLAYAPYA-DLLWCETSTPDLEEARQFAEAIHAKYP--GKLLAY-NCSPS 322 (433)
T ss_pred CcccCCccCCCcCCCceeeecCchHHHHHHHHhcCccc-ceEEEecCCCCHHHHHHHHHHHHHhCC--cceeee-cCCCC
Confidence 25999999999999996 9999997 6899999999986432 22 122222 34554
Q ss_pred CC-------------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHc
Q 012815 294 LN-------------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKR 360 (456)
Q Consensus 294 lt-------------~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~~g~~~~~~~~~~~~e~~~lvg~~~~~~~e~~ 360 (456)
+. ..||.+|||+.-.++...+...-.+|.+.....+..+ |..|-++++ .++.+.++.
T Consensus 323 FNW~~~~~de~i~~Fq~el~~mG~~fqfITlag~H~~~~s~~elA~~y~~dg------M~aYv~vQ~----~E~~~~~~g 392 (433)
T COG2224 323 FNWKKNLDDETIAKFQQELGKMGYKFQFITLAGFHSLNYSMFELARAYAQEG------MKAYVEVQE----REFAAAEDG 392 (433)
T ss_pred cCcccccCHHHHHHHHHHHHhheeeEEEEechhhhhhhhhHHHHHHHHHHhc------hHHHHHHHH----HHHHhhhcC
Confidence 43 3789999999988888888888888888888776532 444444432 233344555
Q ss_pred ccccccC
Q 012815 361 YATSMRR 367 (456)
Q Consensus 361 y~~~~~~ 367 (456)
|.-.++|
T Consensus 393 ~~~~~HQ 399 (433)
T COG2224 393 YTAVKHQ 399 (433)
T ss_pred Ccccchh
Confidence 5555544
No 12
>KOG1260 consensus Isocitrate lyase [Energy production and conversion]
Probab=100.00 E-value=6.2e-48 Score=394.90 Aligned_cols=368 Identities=37% Similarity=0.476 Sum_probs=309.3
Q ss_pred hhhhcccCCCCcccccccccC-------CCcccc-c-cccHHHHHHHHH---hCCCcee-ecccCChHHHHHHHHhCCcE
Q 012815 46 TLLLNTATNPGTINRTRVYRK-------NSTGVE-A-CLSPAKSLRQIL---ELPGVHQ-GPACFDALSAKLVEKSGFSF 112 (456)
Q Consensus 46 ~~~~~~~~~pr~~~~~R~y~~-------~s~~~~-~-a~~~a~~Lr~ll---~~~~~lv-~pgayDalSArl~e~aGfdA 112 (456)
.++.+||.++||+.++|+||+ ||+... | +...+.+|.++| ++.+.+. .+|++|+.+|..+.++|+++
T Consensus 9 ~~iekww~ss~~~~ikr~ysasdv~~~~~s~~~~vypss~~a~kl~~llr~~~n~gtvs~t~Ga~dpvq~sq~~r~gl~~ 88 (492)
T KOG1260|consen 9 EEIEKWWCSSSFSRIKRNYTASDVAVLRGSSPASVYPSSRMARKLFRLLREHHNEGTVSDTLGAKDPVQASQMARAGLSA 88 (492)
T ss_pred HHHHHHhccCCcccccCCCchhhhhhcCCCCCcccchhhhhHHHHHHHHHHhccCCcccccccccCchhHHHHHHhcCCe
Confidence 478899999999999999996 677666 4 666777888877 4445544 89999999999999999999
Q ss_pred EEecchHHhhhhccc--CCCCCCCHHHHHHHHHHHHhc-----------------cC---CcEEEeCCCCCCCHHHHHHH
Q 012815 113 CFTSGFSISAARLAL--PDTGFISYGEMVDQGQLITQA-----------------VS---IPVIGDGDNGYGNAMNVKRT 170 (456)
Q Consensus 113 I~vSG~avSas~lG~--PD~~~lt~~Eml~~~r~I~ra-----------------~~---iPVIaD~DtGYG~~~nv~rt 170 (456)
+|+|||+++++..|- ||...++++.....+.+|.++ .. +|||+|+|+|||++.||+++
T Consensus 89 iyiSG~~cs~~~~~~~~pD~adyP~dtvP~~v~rif~~q~~h~r~q~~~~~i~~~~~dyl~PIIaDad~G~G~atnv~k~ 168 (492)
T KOG1260|consen 89 IYISGWQCSATLSGKLGPDRADYPYDTVPESVERIFKSQLIHDRKQIEAGSIKAEESDYLIPIIADADAGFGGATNVFKT 168 (492)
T ss_pred EEeechhhhhhhccCCCCccccCCCcCCHHHHHHHHHHhhhcchhhhhhccccccccccccceeecCCCCCchHHHHHHH
Confidence 999999999876665 999989988777666666432 12 99999999999999999999
Q ss_pred HHHHHHhCccEEEeCCCCC-CCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHh
Q 012815 171 VKGYIKAGFAGIILEDQVS-PKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (456)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~-pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy 249 (456)
+|.|+++||+|||||||.. -|+|||+.|+.|||++|++.||.|++.+++.||.|++|+||||+++. .|.+.+-+++..
T Consensus 169 ~K~fIeaGaAGIhleDq~~~~k~cgh~sGr~VVPt~ehv~Rl~a~R~~~Dim~sd~iivARTDs~a~-~l~tS~iDpRDh 247 (492)
T KOG1260|consen 169 VKGFIEAGAAGIHLEDQACGEKKCGHMSGRVVVPTEEHVRRLKAARLAADIMGADTIIVARTDSRAA-SLLTSLIDPRDH 247 (492)
T ss_pred HHHHHHcccceeeeehhhcccccccccCCcEEecHHHHHHHHHHHHHHHHHhCCCeEEEEeccchhh-hhhhccCCchhh
Confidence 9999999999999999995 58999999999999999999999999999999999999999999954 445556668888
Q ss_pred HhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHH
Q 012815 250 ADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIK 329 (456)
Q Consensus 250 ~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~ 329 (456)
..+|++..=++. ..++++.++..-+.+|.+-|+.+.+++.|.+...++.+++++.+-|+.+.......++...|-.++
T Consensus 248 ~~i~g~~~~~~s--~~~emk~~~~~~~~~~k~~~~w~~~~kl~~f~ea~~~e~~~~~~~~~~~ei~~~~i~fdw~lpr~k 325 (492)
T KOG1260|consen 248 AFIGGATLSNDS--SLEEMKDFCNVGPLVAKLENMWESGAKLPTFNEAVLEEITYREVKYLASEIGVSEIFFDWELPRTK 325 (492)
T ss_pred hhhhccccchhh--HHHHHHhhcccchhhHHHHHhhhhccccccccHHHHhhhhhhhhhhhHhhhhhhhhhccccccccc
Confidence 888888877666 678999998877778999999998899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCHHHHHHhcCcccHHHHHHcccccc---------------------------------------cCcc-
Q 012815 330 GGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSM---------------------------------------RRLS- 369 (456)
Q Consensus 330 ~g~~~~~~~~~~~~e~~~lvg~~~~~~~e~~y~~~~---------------------------------------~~~~- 369 (456)
+|.....+. ..-.+|.+.++|.-|.+ +..|.... +|+.
T Consensus 326 eG~y~~~gs-a~q~~I~rai~fApy~d-~~w~et~~pd~~eakeFsegv~~~~pd~m~ay~~sPsfn~~~a~~~~~Q~~~ 403 (492)
T KOG1260|consen 326 EGRYRFKGS-AIQEEIGRAIAFAPYAD-LIWMETSYPDRQEAKEFSEGVKKQYPDSMLAYNFSPSFNWKKAGFSDEQLVA 403 (492)
T ss_pred CceecCCCc-hHHHHHHHHHccCchhh-hhhhhcCCCCHHHHHHHHHHhhhcChhhHhhhcCCCCCCcccccCCHHHHHh
Confidence 998877776 66788888888887632 22221110 0000
Q ss_pred -----------------ccCCCCCCCCCcceeeEEEEEEecCCCceeeccccC-----cccchhhhhhccc
Q 012815 370 -----------------SENGGSRDAFSGIWSRTLRVKITGRDGFEKLDVRIP-----AGFLDGITNVVPA 418 (456)
Q Consensus 370 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 418 (456)
.++...++||..+|++-++.+|.|++|.||.||++| +++.+|+.+++-+
T Consensus 404 f~~~l~~~G~~~q~itla~~~~~~~a~~d~~~~~k~dGi~~y~~~E~~dv~~hq~~~~~eyfd~l~~lvqg 474 (492)
T KOG1260|consen 404 FDDDLGKMGFILQVITLAGLHANRNAFVDLSNIFKKDGIKGYDGREKTDVKKHQEPSGTEYFDGLSRLVQG 474 (492)
T ss_pred hhhhHhhcCeEEEEeehhHhcccchhHHHHHHHHHhcccccccccchhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 067899999999999999999999999999999997 4567888877753
No 13
>PLN02892 isocitrate lyase
Probab=100.00 E-value=7.5e-45 Score=383.36 Aligned_cols=285 Identities=22% Similarity=0.269 Sum_probs=242.5
Q ss_pred chhhhhcccCCCCcccccccccC-------CCccccc-cccHHHHHHHHHhCC----CceeecccCChHHHHHHHHhCCc
Q 012815 44 TNTLLLNTATNPGTINRTRVYRK-------NSTGVEA-CLSPAKSLRQILELP----GVHQGPACFDALSAKLVEKSGFS 111 (456)
Q Consensus 44 ~~~~~~~~~~~pr~~~~~R~y~~-------~s~~~~~-a~~~a~~Lr~ll~~~----~~lv~pgayDalSArl~e~aGfd 111 (456)
+..++++||.+|||+|++||||+ ||++++| |+..+++||++|+.. .++...||.|+..|..+.+ |.+
T Consensus 21 ~v~~ie~~w~~pR~~~ikRpYta~dV~~lRGs~~~~y~s~~~A~kLw~lL~~~~~~~~~~~t~Galdp~Q~~Qm~k-~l~ 99 (570)
T PLN02892 21 EVAEVEAWWRSERFKLTRRPYSARDVAALRGTLKQSYASNEMAKKLWRTLKTHQANGTASRTFGALDPVQVAQMAK-HLD 99 (570)
T ss_pred HHHHHHHhhcChhhcCCcCCCCHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhhccCCceeeccCCcHHHHHHHHc-cCc
Confidence 44579999999999999999995 9999999 788899999999865 6899999999999999888 999
Q ss_pred EEEecchHHhhhh----cccCCCCCCCHHHHHHHHHHHHhc-------------------------cC--CcEEEeCCCC
Q 012815 112 FCFTSGFSISAAR----LALPDTGFISYGEMVDQGQLITQA-------------------------VS--IPVIGDGDNG 160 (456)
Q Consensus 112 AI~vSG~avSas~----lG~PD~~~lt~~Eml~~~r~I~ra-------------------------~~--iPVIaD~DtG 160 (456)
+||+|||++|+.. .-+||...+|++.+...+++|.++ ++ +||+||+|+|
T Consensus 100 ~iYvSGWq~ss~a~t~~e~~PD~adYP~~tVP~~V~ri~~Aq~~hDr~q~~~r~~~~~~~r~~~~~~Dyl~PIiADaEtG 179 (570)
T PLN02892 100 TIYVSGWQCSSTATSTNEPGPDLADYPMDTVPNKVEHLFFAQLYHDRKQREARMSMSREERARTPYVDYLKPIIADGDTG 179 (570)
T ss_pred eEEechhhhcCccccCCCCCCCcccCccccccHHHHHHHHHHHHHHHHHHHHHhccCHHHhcCCCccccccceeeecCCC
Confidence 9999999998752 358999999999999988888532 23 8999999999
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCC-CCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcc--
Q 012815 161 YGNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL-- 237 (456)
Q Consensus 161 YG~~~nv~rtVk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~-- 237 (456)
||+..+++++|++|+++||+|||||||. +||+|||++||.|+|.+++++||+||+.+.+.+|++|+||||||++++.
T Consensus 180 yG~~~~~~~~vk~~ieaGAaGIhIEDQ~~~~KkCGh~~gk~Lvp~~e~v~RI~AAR~aad~~G~d~vI~ARTDA~~a~Li 259 (570)
T PLN02892 180 FGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMGGKVLVATSEHINRLVAARLQFDVMGVETVLVARTDAVAATLI 259 (570)
T ss_pred CCccHHHHHHHHHHHHcCCeEEEEECCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhcccc
Confidence 9999998899999999999999999998 7999999999999999999999999999999999999999999996310
Q ss_pred --------------------------------------------------------------------------------
Q 012815 238 -------------------------------------------------------------------------------- 237 (456)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (456)
T Consensus 260 ts~iD~RDh~FI~Gat~~~~~~~~l~~~~~~a~~~g~~g~~l~~~e~~W~~~a~l~tf~eav~~~i~~~~~~~~~~~~~~ 339 (570)
T PLN02892 260 QSNIDARDHQFILGATNPALRGKPLATLLAEAMAAGKSGAELQAIEDEWLAQAQLMTFSEAVADAIKSMNISENEKRRRL 339 (570)
T ss_pred hhhhccccccceeeecCCccccCCHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCccHHHHHHHHHHhcccccchhHHHH
Confidence
Q ss_pred ----------------------------------------------cHHHHHHHHHHhHhcCCCEEEecc-CCCHHHHHH
Q 012815 238 ----------------------------------------------SLEESLRRSRAFADAGADVLFIDA-LASKEEMKA 270 (456)
Q Consensus 238 ----------------------------------------------~ldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~ 270 (456)
+++-+|.|+.+|+. .||+||+|. .|+.+++++
T Consensus 340 ~~~~~~~~~~~s~~e~r~lA~~~~~~~v~fdwd~~Rt~EG~Y~~k~G~~~aI~R~~A~AP-yaDliW~ET~~Pdl~~A~~ 418 (570)
T PLN02892 340 NEWMASVPKCLSNEQARRIAAKLGVANVFWDWDLPRTREGFYRFRGSVKACIVRGRAFAP-YADLIWMETASPDLAEATK 418 (570)
T ss_pred HHHHhhccccCCHHHHHHHHHHhCCCCCcccCCCCcCcccceeeCCChHHHHHHHHhccc-ccCEEEecCCCCCHHHHHH
Confidence 24568999999987 599999998 689999999
Q ss_pred HHHh----CCCCceeeeeeccCC-CCCCCC-------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 012815 271 FCEI----SPLVPKMANMLEGGG-KTPILN-------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (456)
Q Consensus 271 i~~~----v~~vP~~~N~~~~~g-~tp~lt-------~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~~ 330 (456)
|++. +|...+..|....-. +...++ ..||++|||..-.+....+...-.+|.+..+.+++
T Consensus 419 Fa~~V~~~~P~k~LaYNlSPSFNW~~~g~~d~~i~~F~~dLaklGy~~QfITLaG~H~~~~~~~~lA~~~~~ 490 (570)
T PLN02892 419 FAEGVKAKHPEIMLAYNLSPSFNWDASGMTDEQMAEFIPRLARLGYCWQFITLAGFHANALVVDTFARDYAR 490 (570)
T ss_pred HHHHHHHhCCCCeeeecCCCCcCCCCCCCCHHHHHHHHHHHHhcCceEEEEchHhhhhhHHHHHHHHHHHHH
Confidence 9865 555445556542111 111233 27899999999999998888888888888877764
No 14
>PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4.1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A ....
Probab=100.00 E-value=3.1e-43 Score=368.43 Aligned_cols=278 Identities=27% Similarity=0.350 Sum_probs=212.3
Q ss_pred hhhhhcccCCCCcccccccccC-------CCccccc-cccHHHHHHHHHhCC----CceeecccCChHHHHHHHHhCCcE
Q 012815 45 NTLLLNTATNPGTINRTRVYRK-------NSTGVEA-CLSPAKSLRQILELP----GVHQGPACFDALSAKLVEKSGFSF 112 (456)
Q Consensus 45 ~~~~~~~~~~pr~~~~~R~y~~-------~s~~~~~-a~~~a~~Lr~ll~~~----~~lv~pgayDalSArl~e~aGfdA 112 (456)
..++++||++|||+|++|+|++ ||+++.| +...+++||++|+.. .+....|+.|+.....+. +|+++
T Consensus 2 v~~i~~ww~~pR~~~i~R~Yta~dV~~~Rgs~~~~y~s~~~a~kLw~ll~~~~~~~~~~~t~g~~~p~~~~q~~-~~l~~ 80 (526)
T PF00463_consen 2 VEEIEKWWASPRWKGIKRPYTAEDVVKLRGSLPIEYPSSIQAKKLWKLLEEHFKNGYVSHTGGATDPQQVQQMA-KGLEA 80 (526)
T ss_dssp HHHHHHHHTSGGGTT---SS-HHHHHHHTTSS---HHHHHHHHHHHHHHHHTSSSSSEEEEBBSSHHHHHHHHH-CT-SS
T ss_pred hHHHHHHhcCccccCCCCCCCHHHHHHhccCCCCCChHHHHHHHHHHHHHhhhhcCCcceecccccHHHHHHHH-hcCCe
Confidence 4578999999999999999995 9999888 888999999999863 567788999999998886 59999
Q ss_pred EEecchHHhhhh----cccCCCCCCCHHHHHHHHHHHHhc-------------------------cC--CcEEEeCCCCC
Q 012815 113 CFTSGFSISAAR----LALPDTGFISYGEMVDQGQLITQA-------------------------VS--IPVIGDGDNGY 161 (456)
Q Consensus 113 I~vSG~avSas~----lG~PD~~~lt~~Eml~~~r~I~ra-------------------------~~--iPVIaD~DtGY 161 (456)
||+|||++|+.. --+||.+.+|++.+...+++|.++ ++ .|||||+|+||
T Consensus 81 iYvSGWq~ss~~s~~~e~~PD~s~YP~~tVP~~V~ri~~aq~~~D~~q~~~~~~~~~~~r~~~~~~Dyl~PIIADad~Gf 160 (526)
T PF00463_consen 81 IYVSGWQCSSDASTSNEPYPDQSDYPYDTVPNKVERIFNAQLRHDRKQWEERLSMTKEERAKTPYIDYLRPIIADADAGF 160 (526)
T ss_dssp EEE-HHHHHHHS-TT-S--SSSS-S-TTHHHHHHHHHHHHHHHHHHHHHHCTCSTTSTTHTTS--S-SS--EEEE-TTTS
T ss_pred EEeeceeeecccccCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHhcccccchhhcccCcccceeeeeeccccCC
Confidence 999999998532 358999999999999999988642 22 89999999999
Q ss_pred CCHHHHHHHHHHHHHhCccEEEeCCCC-CCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhccc--
Q 012815 162 GNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALS-- 238 (456)
Q Consensus 162 G~~~nv~rtVk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~-- 238 (456)
|++.++++++|.|+|+||+|||||||. ..|+|||++||.|||++|++.||.||+.+.+.||.+.+|+||||+.++..
T Consensus 161 GG~~~v~kL~K~fiEaGaAgiH~EDQ~~~~KKCGH~~GKVlVPt~e~i~rL~AaRl~~Dimg~~~liiARTDa~~A~Lit 240 (526)
T PF00463_consen 161 GGLTAVMKLTKLFIEAGAAGIHFEDQLSGEKKCGHMGGKVLVPTSEHINRLVAARLQADIMGVPTLIIARTDAEAATLIT 240 (526)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEESB-GGG-B-STTSBEEE--HHHHHHHHHHHHHHHHHHT---EEEEEE-TTTEEEES
T ss_pred CCHHHHHHHHHHHHhcCCceechhhccccccceeccCCcEEecHHHHHHHHHHHHHHHHHhCCCcEEEEeechhhhcccc
Confidence 999999999999999999999999998 58999999999999999999999999999999999999999999975210
Q ss_pred --------------------------------------------------------------------------------
Q 012815 239 -------------------------------------------------------------------------------- 238 (456)
Q Consensus 239 -------------------------------------------------------------------------------- 238 (456)
T Consensus 241 s~iD~rDh~fi~G~~~~~~~pl~~~l~~ae~~G~~g~ei~~~E~~W~~~A~L~TFdEAV~~~i~~~~~~~k~~~~~~~~~ 320 (526)
T PF00463_consen 241 SDIDPRDHPFILGATNPEVKPLAEVLAEAEAAGASGAEIQAIEDEWYKKAGLMTFDEAVEDAIKASEYSNKKSRIEEYLS 320 (526)
T ss_dssp -TTSCCCGGGEEEEE-TTS--HHHHHHHHHHS---SHHHHHHHHHHHHHS-EE-SHHHHHHHHHTSS-S-HHHHHHHHHH
T ss_pred cCccccccchhcCCCCCCCccHHHHHHHHHHcCCChHHHHHHHHHHHHcCCeeEHHHHHHHHHHhccccchHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------HHHHHHHHHHhHhcCCCEEEecc-CCCHHHHHHHHH
Q 012815 239 --------------------------------------------LEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCE 273 (456)
Q Consensus 239 --------------------------------------------ldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~ 273 (456)
++-+|.|+.+|+.. ||+||+|. .|+.+++++|++
T Consensus 321 ~~~~~~~~S~~eaR~lAk~l~g~~vfFDWD~pRt~EG~Y~~k~g~~~aI~Ra~A~aPy-ADllW~ET~~Pd~~~a~~Fa~ 399 (526)
T PF00463_consen 321 KVKGKSFLSLREARALAKELLGKDVFFDWDAPRTREGYYRFKGGTEAAIARALAFAPY-ADLLWMETKTPDLAQAKEFAE 399 (526)
T ss_dssp HHTT--HH---HHHHHHHHHHSS--GBBTTTCE-TTS-EEE--SHHHHHHHHHHHGGG--SEEEE--SS--HHHHHHHHH
T ss_pred HccccCcccHHHHHHHHHHhcCCCceEecccccChhhchhcCCChHHHHHHHHhhCcc-cCeeeEecCCCCHHHHHHHHH
Confidence 88899999999876 89999997 588899999886
Q ss_pred h----CCCCceeeeeeccCCCCCCCC-------------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 012815 274 I----SPLVPKMANMLEGGGKTPILN-------------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (456)
Q Consensus 274 ~----v~~vP~~~N~~~~~g~tp~lt-------------~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~~ 330 (456)
. +|+.-+..|.. |.+. ..||+++||..-.++...+...-.++.+.++..++
T Consensus 400 ~V~~~~P~k~LaYNlS------PSFNW~~~~~~~ei~~F~~dLak~G~~~QfItLaG~H~~~~~~~~lAk~y~~ 467 (526)
T PF00463_consen 400 GVHAVYPGKKLAYNLS------PSFNWDAAGSDDEIKSFQWDLAKLGYVWQFITLAGFHSLALSMFELAKDYKK 467 (526)
T ss_dssp HHHHHSTT-EEEEEE-------SSSTHHHHS-HHHHHHHHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcceEEecCC------cccchhhhhhhhHHHHHHHHHHhhhHheeeeeHHHHHHhHHHHHHHHHHHHH
Confidence 4 56544555653 4332 36899999999999999999888888888888865
No 15
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=100.00 E-value=1.8e-40 Score=323.43 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=162.9
Q ss_pred HHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC-CcEEEeCC
Q 012815 80 SLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIGDGD 158 (456)
Q Consensus 80 ~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~-iPVIaD~D 158 (456)
.|++++++++++++|||||++||++++++|||+||+||++.+ +.+|+||++.+|++||++|+++|+++++ +||++|+|
T Consensus 3 ~~~~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a-~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~ 81 (240)
T cd06556 3 LLQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGM-TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLP 81 (240)
T ss_pred hHHHHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHH-HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 467777778999999999999999999999999999998886 5789999999999999999999999996 89999999
Q ss_pred CCCCCH-HHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh--
Q 012815 159 NGYGNA-MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-- 235 (456)
Q Consensus 159 tGYG~~-~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~-- 235 (456)
+|||+. +++.+++++++++||+|||||||. +++++|++++++. |+|+||||+..
T Consensus 82 ~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~-----------------~~~~~i~ai~~a~------i~ViaRtd~~pq~ 138 (240)
T cd06556 82 FGAYGAPTAAFELAKTFMRAGAAGVKIEGGE-----------------WHIETLQMLTAAA------VPVIAHTGLTPQS 138 (240)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH-----------------HHHHHHHHHHHcC------CeEEEEeCCchhh
Confidence 999864 899999999999999999999982 6788999987763 89999999942
Q ss_pred -------------cccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeee
Q 012815 236 -------------ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANML 285 (456)
Q Consensus 236 -------------~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~ 285 (456)
..+++++|+|+++|++||||+||+|++ +.+++++|+++++ +|+..|..
T Consensus 139 ~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~~~-~P~~~~ga 199 (240)
T cd06556 139 VNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV-PVELAKQITEALA-IPLAGIGA 199 (240)
T ss_pred hhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHhCC-CCEEEEec
Confidence 246899999999999999999999998 8899999999987 78877654
No 16
>PRK06498 isocitrate lyase; Provisional
Probab=100.00 E-value=9.2e-40 Score=339.62 Aligned_cols=280 Identities=23% Similarity=0.250 Sum_probs=223.0
Q ss_pred hcccCCCCccccccccc---C--CCccccc--cccHHHHHHHHHhC-----CCceeecccCChHHHHHHHHh---CC---
Q 012815 49 LNTATNPGTINRTRVYR---K--NSTGVEA--CLSPAKSLRQILEL-----PGVHQGPACFDALSAKLVEKS---GF--- 110 (456)
Q Consensus 49 ~~~~~~pr~~~~~R~y~---~--~s~~~~~--a~~~a~~Lr~ll~~-----~~~lv~pgayDalSArl~e~a---Gf--- 110 (456)
.....+|||+||.--+. + |++.+++ +...++.||++++. ...+...|||++..|....++ ||
T Consensus 14 ~~~~~~~~w~~i~~e~v~rlr~q~~~~~~~~iA~~~a~~~~~~m~~yd~d~~~y~~slGa~~g~~a~Q~~~a~k~~~~~t 93 (531)
T PRK06498 14 LKEKQGSTWNAINPESAARMRLQNRFKTGLDIAKYTAKIMRADMAAYDADSSKYTQSLGCWHGFIAQQKMISIKKHFGTT 93 (531)
T ss_pred HHhhcCCCCCCCCHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHhhcccchhhhhhhcCCcHHHHHHHHHHHHhccCCC
Confidence 34456899999943333 2 9999998 88889999999987 567889999999999999888 99
Q ss_pred --cEEEecchHHhhhh--c-ccCCCCCCCHHHHHHHHHHHHhc-------------------------------------
Q 012815 111 --SFCFTSGFSISAAR--L-ALPDTGFISYGEMVDQGQLITQA------------------------------------- 148 (456)
Q Consensus 111 --dAI~vSG~avSas~--l-G~PD~~~lt~~Eml~~~r~I~ra------------------------------------- 148 (456)
++||+|||.+|+.. . -+||..+++.+.+...+++|-.+
T Consensus 94 ~~~~iYlSGW~vAa~~n~~g~~PDqS~yp~~sVP~lv~~i~~~l~~AD~~~~~~lf~~~~~a~~~g~~~~~~~~~~~~d~ 173 (531)
T PRK06498 94 KRRYLYLSGWMVAALRSEFGPLPDQSMHEKTSVPALIEELYTFLRQADARELNDLFRELDAAREAGDKAKEAAIQAKIDN 173 (531)
T ss_pred ccceEEehhhHHHhhhhccCCCCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhhcccc
Confidence 99999999999753 2 39999999988777766665221
Q ss_pred ---cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCC-CCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC-
Q 012815 149 ---VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVS-PKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS- 223 (456)
Q Consensus 149 ---~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~-pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~- 223 (456)
.-+|||||+|+|||+++|++++||+|+++||+|||||||++ ||+|||++||.|+|.+||++||+||+.|++++|.
T Consensus 174 ~~~~~iPIIADaDtGfG~~~nv~r~vk~~ieAGAAgIhIEDQv~~~KkCGHl~GK~lVp~ee~i~KI~AAr~A~d~~G~~ 253 (531)
T PRK06498 174 FETHVVPIIADIDAGFGNEEATYLLAKKMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKIRAVRYAFLELGVD 253 (531)
T ss_pred ccccccceEEEcCCCCCcHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCCCCEeccHHHHHHHHHHHHHHHHhcCCC
Confidence 12899999999999999999999999999999999999996 8999999999999999999999999999998885
Q ss_pred CeEEEEecchhhcc--------------------------------------------------------------cHHH
Q 012815 224 DIVIVARTDSRQAL--------------------------------------------------------------SLEE 241 (456)
Q Consensus 224 dfvIiARTDA~~~~--------------------------------------------------------------~lde 241 (456)
||+||||||++++. +.|.
T Consensus 254 D~vIIARTDA~~A~L~~~Id~~~~~g~~~~~~~~w~~~~~i~~~~~~~~~~~i~~~~~~~~~~Rt~eG~Y~~k~gtg~~~ 333 (531)
T PRK06498 254 DGVIVARTDSLGAGLTQQIAVSQEPGDLGDQYNSFLDCEEIDAADLGNGDVVIKRDGKLLRPKRLPSGLFQFREGTGEDR 333 (531)
T ss_pred CEEEEEecchhhcCCccccccccccchhhHHHHhhhhhcccCHHHhcccchhHhhcccccCCCCCcccceeecCCCchHH
Confidence 69999999997542 3455
Q ss_pred HHHHHHHhHhcCCCEEEecc-CCCHHHHHHHHHh----CCCCceeeeeeccCCCCCCC----------------------
Q 012815 242 SLRRSRAFADAGADVLFIDA-LASKEEMKAFCEI----SPLVPKMANMLEGGGKTPIL---------------------- 294 (456)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~~----v~~vP~~~N~~~~~g~tp~l---------------------- 294 (456)
+|.||.+...-|||+||+|. .|+.+++++|++. +|...+..|....-.-+-.+
T Consensus 334 ~I~r~i~a~apyADLlW~ET~~P~~~qa~~fa~~Ir~~~P~~~LaYN~SPSFNW~~~~r~q~~~~~~~~G~~~~~~~~~~ 413 (531)
T PRK06498 334 CVLDCITSLQNGADLLWIETEKPHVAQIAGMVNRIREVVPNAKLVYNNSPSFNWTLNFRQQVYDAWKAEGKDVSAYDRAK 413 (531)
T ss_pred HHHHHHHhhcCcCcEEEecCCCCCHHHHHHHHHHHHHHCCCCeEEecCCCCcchhhhHHHHHHHHHHHhcccccccchhh
Confidence 99999953367899999998 6888999988865 55444445543210000011
Q ss_pred --------------C-------HHHHHh-cCCCEEeccchHHHHHHHHHHHHHHHH
Q 012815 295 --------------N-------PLELEE-LGFKLVAYPLSLIGVSVRAMQDALTAI 328 (456)
Q Consensus 295 --------------t-------~~eL~e-lGv~~Vs~p~~ll~aa~~A~~~~l~~i 328 (456)
+ ..||++ +||..-.+....+.....+|.+..+..
T Consensus 414 lm~~~~d~~~l~~~~d~~i~~Fq~dla~~~G~~~qfITLag~Ht~als~~~LAk~y 469 (531)
T PRK06498 414 LMSAEYDDTELAAEADEKIRTFQADAAREAGIFHHLITLPTYHTAALSTDNLAKGY 469 (531)
T ss_pred hccccccccccccCCHHHHHHHHHHHHHhCCceEEEeccHhHHHhHHHHHHHHHHH
Confidence 1 145666 888887777777777777777766664
No 17
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=100.00 E-value=4.9e-36 Score=294.52 Aligned_cols=178 Identities=21% Similarity=0.274 Sum_probs=155.7
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCc-EEEeC
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIP-VIGDG 157 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iP-VIaD~ 157 (456)
..||++|++++++++|||||++||++++++|||+++++ .+++++.+|+||++.+|++||++|+++|+++++.| |++|+
T Consensus 2 ~~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~vG-ds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~ 80 (254)
T cd06557 2 PDLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILVG-DSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADM 80 (254)
T ss_pred hhHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEEC-HHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 46999999999999999999999999999999999965 34445579999999999999999999999999999 99999
Q ss_pred CCC-CCC-HHHHHHH-HHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH--------------h
Q 012815 158 DNG-YGN-AMNVKRT-VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK--------------E 220 (456)
Q Consensus 158 DtG-YG~-~~nv~rt-Vk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~--------------~ 220 (456)
++| |++ ++++.++ ++.|+++||+||||||+ +++++||+++++++. .
T Consensus 81 ~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~-----------------~~~~~~I~al~~agipV~gHiGL~pq~~~~ 143 (254)
T cd06557 81 PFGSYQTSPEQALRNAARLMKEAGADAVKLEGG-----------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQ 143 (254)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------------HHHHHHHHHHHHcCCCeeccccccceeeec
Confidence 965 986 7775555 56666699999999998 488999999998872 1
Q ss_pred hCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCcee
Q 012815 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKM 281 (456)
Q Consensus 221 ~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~ 281 (456)
+ ++|.+++|||+. .+++|+|+++|++||||+||+|++++ +++++++++++ +|+.
T Consensus 144 ~-gg~~~~grt~~~----a~~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v~-iP~i 197 (254)
T cd06557 144 L-GGYKVQGKTEEE----AERLLEDALALEEAGAFALVLECVPA-ELAKEITEALS-IPTI 197 (254)
T ss_pred c-CCceeccCCHHH----HHHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCC-CCEE
Confidence 2 478899999886 38999999999999999999999986 79999999998 7864
No 18
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=100.00 E-value=2.4e-35 Score=291.06 Aligned_cols=232 Identities=19% Similarity=0.241 Sum_probs=176.6
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCc-EEEe
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIP-VIGD 156 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iP-VIaD 156 (456)
..+||++|+++++++||||||++||++++++|||+++++ .+++++.+|+||++.+|++||++|+++|+++++.| |++|
T Consensus 4 ~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vG-ds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD 82 (264)
T PRK00311 4 ISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVG-DSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVAD 82 (264)
T ss_pred HHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEEC-HHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEe
Confidence 467999999999999999999999999999999999976 34444579999999999999999999999999875 9999
Q ss_pred CCCC-CC-CHHH-HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH--------------
Q 012815 157 GDNG-YG-NAMN-VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK-------------- 219 (456)
Q Consensus 157 ~DtG-YG-~~~n-v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~-------------- 219 (456)
+++| |+ ++++ +.++++.++++||+||||||+ +++++||+++++++-
T Consensus 83 ~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg-----------------~~~~~~I~al~~agIpV~gHiGL~pq~~~ 145 (264)
T PRK00311 83 MPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG-----------------EEVAETIKRLVERGIPVMGHLGLTPQSVN 145 (264)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------------HHHHHHHHHHHHCCCCEeeeecccceeec
Confidence 9965 85 6776 455566666799999999997 378899999998761
Q ss_pred hhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCC-CCCCHHH
Q 012815 220 ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKT-PILNPLE 298 (456)
Q Consensus 220 ~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~t-p~lt~~e 298 (456)
.+ ++|++++|||+. .+++|+||++|++||||+||+|++++ +++++++++++ +|+. -+=.++.+. .-|=..|
T Consensus 146 ~~-gg~~i~grt~~~----a~~~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l~-iP~i-giGaG~~~dgqvlv~~D 217 (264)
T PRK00311 146 VL-GGYKVQGRDEEA----AEKLLEDAKALEEAGAFALVLECVPA-ELAKEITEALS-IPTI-GIGAGPDCDGQVLVWHD 217 (264)
T ss_pred cc-CCeeeecCCHHH----HHHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCC-CCEE-EeccCCCCCceeeeHHh
Confidence 12 379999999986 38999999999999999999999977 79999999998 7874 221111110 0111233
Q ss_pred HHhcCCCEEeccch------HHHHHHHHHHHHHHHHHcCCCCCCC
Q 012815 299 LEELGFKLVAYPLS------LIGVSVRAMQDALTAIKGGRIPSPG 337 (456)
Q Consensus 299 L~elGv~~Vs~p~~------ll~aa~~A~~~~l~~i~~g~~~~~~ 337 (456)
+- |+.-=-.|-. +......|+++..++.++|.+|.++
T Consensus 218 ~l--G~~~~~~pkf~k~~~~~~~~~~~a~~~y~~~V~~~~fP~~~ 260 (264)
T PRK00311 218 ML--GLFSGFKPKFVKRYADLAGSIREAVKAYVAEVKSGSFPGEE 260 (264)
T ss_pred hc--CCCCCCCCCchHhHhhhHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 32 2210001111 2334566677777777788877654
No 19
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=99.98 E-value=1.9e-30 Score=255.79 Aligned_cols=234 Identities=14% Similarity=0.143 Sum_probs=171.0
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC-CcEEEe
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIGD 156 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~-iPVIaD 156 (456)
-..|+++++++++++||||||+.||++++++|||+|+++++.. +..+|+||+..+|++||++|+++|+|++. ..|++|
T Consensus 4 ~~~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlg-m~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~D 82 (263)
T TIGR00222 4 TLSLLQKKKQEEKIVAITAYDYSFAKLFADAGVDVILVGDSLG-MVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTD 82 (263)
T ss_pred HHHHHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEEECccHh-HHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeC
Confidence 3568999999999999999999999999999999999994333 24799999999999999999999999986 557789
Q ss_pred CCCC-CCCHHHHHHHHHHHHH-hCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHh--------------Hh
Q 012815 157 GDNG-YGNAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDAR--------------KE 220 (456)
Q Consensus 157 ~DtG-YG~~~nv~rtVk~l~~-AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar--------------~~ 220 (456)
+|+| |++++.+.+++.++++ +||+||||||+. +++++|++++++. +.
T Consensus 83 mPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg~-----------------~~~~~i~~l~~~gIpV~gHiGltPq~a~~ 145 (263)
T TIGR00222 83 LPFMSYATPEQALKNAARVMQETGANAVKLEGGE-----------------WLVETVQMLTERGVPVVGHLGLTPQSVNI 145 (263)
T ss_pred CCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCcH-----------------hHHHHHHHHHHCCCCEEEecCCCceeEee
Confidence 9996 9888888888877776 999999999973 3344444444321 11
Q ss_pred hCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCC-CCCCHHHH
Q 012815 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKT-PILNPLEL 299 (456)
Q Consensus 221 ~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~t-p~lt~~eL 299 (456)
+ .+|.+++||++.+ +++|+||++|++||||+||+|+++ .+.+++++++++ +|+. -+=.++++. .-|=..||
T Consensus 146 ~-ggy~~qgrt~~~a----~~~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~l~-iP~i-GIGaG~~~dGQvlV~~D~ 217 (263)
T TIGR00222 146 L-GGYKVQGKDEEAA----KKLLEDALALEEAGAQLLVLECVP-VELAAKITEALA-IPVI-GIGAGNVCDGQILVMHDA 217 (263)
T ss_pred c-CCeeecCCCHHHH----HHHHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHhCC-CCEE-eeccCCCCCceeeeHHhh
Confidence 1 3688888887754 789999999999999999999999 489999999988 6742 121111110 01223444
Q ss_pred HhcCCC----EEeccchHHHHHHHHHHHHHHHHHcCCCCCCC
Q 012815 300 EELGFK----LVAYPLSLIGVSVRAMQDALTAIKGGRIPSPG 337 (456)
Q Consensus 300 ~elGv~----~Vs~p~~ll~aa~~A~~~~l~~i~~g~~~~~~ 337 (456)
--+.-. .+--=..+......|+++..++.++|.+|.++
T Consensus 218 lG~~~~~~pkf~k~y~~~~~~~~~a~~~y~~~V~~g~fP~~~ 259 (263)
T TIGR00222 218 LGITVGHIPKFAKNYLAETETIRAAVRQYMAEVRSGVFPGEE 259 (263)
T ss_pred cCCCCCCCCCchHHHhhHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 333211 11100112334556777777777888877654
No 20
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=99.97 E-value=1.6e-29 Score=254.99 Aligned_cols=234 Identities=17% Similarity=0.213 Sum_probs=170.3
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEE-
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG- 155 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIa- 155 (456)
...|+++++++++|+|++|||+.||++++++|+|+|+++ |.++ .++||||+..+|++||++|+++|+|++..|+++
T Consensus 24 i~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgm--v~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVa 101 (332)
T PLN02424 24 LRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAM--VVHGHDTTLPITLDEMLVHCRAVARGANRPLLVG 101 (332)
T ss_pred HHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHH--HhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEe
Confidence 568999999999999999999999999999999999999 4443 479999999999999999999999999988776
Q ss_pred eCCCC-CC-CHHHHHHHHHHHH-HhCccEEEeCCCC-C------------CCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 156 DGDNG-YG-NAMNVKRTVKGYI-KAGFAGIILEDQV-S------------PKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 156 D~DtG-YG-~~~nv~rtVk~l~-~AGaaGI~IEDq~-~------------pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
|+|+| |+ +++.+.+++.+++ ++||+||||||+. . .+.|||.+ |.|+...
T Consensus 102 DmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiG---LtPQs~~------------ 166 (332)
T PLN02424 102 DLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVG---LTPQAIS------------ 166 (332)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeec---ccceeeh------------
Confidence 99999 97 7888888888885 6999999999982 1 22344433 3332211
Q ss_pred hhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCC-CCCHHH
Q 012815 220 ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP-ILNPLE 298 (456)
Q Consensus 220 ~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp-~lt~~e 298 (456)
.+ .+|.+++||+.. .++.|+||++|++||||+||+|++++. .+++|+++++ +|++ -+=.++++-- -|=..|
T Consensus 167 ~l-GGykvqGr~~~~----a~~li~dA~ale~AGAf~ivLE~Vp~~-la~~It~~l~-IPtI-GIGAG~~cDGQVLV~~D 238 (332)
T PLN02424 167 VL-GGFRPQGRTAES----AVKVVETALALQEAGCFAVVLECVPAP-VAAAITSALQ-IPTI-GIGAGPFCSGQVLVYHD 238 (332)
T ss_pred hh-cCccccCCCHHH----HHHHHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHHhCC-CCEE-eecCCCCCCceeEeHHh
Confidence 01 134555555442 478899999999999999999999986 9999999998 8875 2211111100 111233
Q ss_pred HHhcCCCEE-----eccch------HHHHHHHHHHHHHHHHHcCCCCCCCC
Q 012815 299 LEELGFKLV-----AYPLS------LIGVSVRAMQDALTAIKGGRIPSPGS 338 (456)
Q Consensus 299 L~elGv~~V-----s~p~~------ll~aa~~A~~~~l~~i~~g~~~~~~~ 338 (456)
+- |+..= ..|.. +......|+++..++.++|.+|....
T Consensus 239 ~L--G~~~~p~h~~~~PkFvk~y~~~~~~~~~A~~~y~~eVk~g~FP~~eh 287 (332)
T PLN02424 239 LL--GMMQHPHHAKVTPKFCKQYAKVGEVINKALAEYKEEVENGAFPGPAH 287 (332)
T ss_pred hc--CCCCCccccCCCCchHHHHHhHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence 32 22100 12222 33445677777777888888886543
No 21
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=99.93 E-value=1.3e-25 Score=220.97 Aligned_cols=180 Identities=19% Similarity=0.295 Sum_probs=137.5
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEE
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIG 155 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIa 155 (456)
-.+|++++++++++++.+|||+.+|++++++|+|.|+++ |.++. .+|++++..+|++||++|++.++|++ +.+|++
T Consensus 5 ~~~l~~~k~~g~ki~~lTaYD~~~A~~~d~agvD~iLVGDSlgmv--~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~ 82 (261)
T PF02548_consen 5 VSDLRKMKQKGEKIVMLTAYDYPSARIADEAGVDIILVGDSLGMV--VLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVA 82 (261)
T ss_dssp HHHHHHHHHHT--EEEEE--SHHHHHHHHHTT-SEEEE-TTHHHH--TT--SSSTT--HHHHHHHHHHHHHH-TSSEEEE
T ss_pred HHHHHHHHhCCCcEEEEecccHHHHHHHHHcCCCEEEeCCcHHHh--eeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEe
Confidence 467999999999999999999999999999999999999 88875 79999999999999999999999998 588999
Q ss_pred eCCCC-C-CCHHHHHHHHHHHHH-hCccEEEeCCCCC------------CCCccCCCCccccCHHHHHHHHHHHHHHhHh
Q 012815 156 DGDNG-Y-GNAMNVKRTVKGYIK-AGFAGIILEDQVS------------PKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (456)
Q Consensus 156 D~DtG-Y-G~~~nv~rtVk~l~~-AGaaGI~IEDq~~------------pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~ 220 (456)
|+|+| | .+++++.+++.++++ +||++|+||+... .+.|||.+ |+|+... +
T Consensus 83 DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~~GIPV~gHiG---LtPQ~~~--~---------- 147 (261)
T PF02548_consen 83 DMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVDAGIPVMGHIG---LTPQSVH--Q---------- 147 (261)
T ss_dssp E--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHHTT--EEEEEE---S-GGGHH--H----------
T ss_pred cCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHHCCCcEEEEec---Cchhhee--c----------
Confidence 99999 8 578888888877776 9999999998742 56788887 7776422 2
Q ss_pred hCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCcee
Q 012815 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKM 281 (456)
Q Consensus 221 ~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~ 281 (456)
+| +|.+++||...+ .+.++.|+++++|||++|++|++|. +..++++++++ +|+.
T Consensus 148 ~G-Gyr~qGk~~~~a----~~l~~~A~ale~AGaf~ivlE~vp~-~la~~It~~l~-IPtI 201 (261)
T PF02548_consen 148 LG-GYRVQGKTAEEA----EKLLEDAKALEEAGAFAIVLECVPA-ELAKAITEALS-IPTI 201 (261)
T ss_dssp HT-SS--CSTSHHHH----HHHHHHHHHHHHHT-SEEEEESBBH-HHHHHHHHHSS-S-EE
T ss_pred cC-CceEEecCHHHH----HHHHHHHHHHHHcCccEEeeecCHH-HHHHHHHHhCC-CCEE
Confidence 34 899999997765 5778999999999999999999987 68889999998 8875
No 22
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=99.92 E-value=4.9e-24 Score=208.21 Aligned_cols=236 Identities=18% Similarity=0.232 Sum_probs=179.9
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEE
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIG 155 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIa 155 (456)
..+|+++.+.++++++++|||+.+|++++++|+|.|+++ |.++. .+|++++..+|+++|+.|++.++|++ +..|++
T Consensus 4 ~~~~~~~k~~~~ki~~lTAYD~~~A~~~d~agvd~lLVGDSlgmv--v~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv~ 81 (268)
T COG0413 4 TRTLIKMKQEGEKIVMLTAYDYPFAKLFDQAGVDVLLVGDSLGMV--VLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVVA 81 (268)
T ss_pred HHHHHHHHhcCCceEEEeccccHHHhhhhhcCCcEEEEeccHHHH--HcCCCCcceecHHHHHHHHHHHHhcCCCeeEEe
Confidence 467899999999999999999999999999999999999 88875 69999999999999999999999998 588999
Q ss_pred eCCCC-CC-CHHHHHHHHHHHH-HhCccEEEeCCCCC------------CCCccCCCCccccCHHHHHHHHHHHHHHhHh
Q 012815 156 DGDNG-YG-NAMNVKRTVKGYI-KAGFAGIILEDQVS------------PKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (456)
Q Consensus 156 D~DtG-YG-~~~nv~rtVk~l~-~AGaaGI~IEDq~~------------pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~ 220 (456)
|+|+| |. ++++..+++.++. ++||.+|++|.+.+ .+.|||.+ |+|+.. ..
T Consensus 82 DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG~~~~~~i~~L~~~gIPV~gHiG---LtPQ~v--~~---------- 146 (268)
T COG0413 82 DLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGGEEMAETIKRLTERGIPVMGHIG---LTPQSV--NW---------- 146 (268)
T ss_pred CCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHcCCceEEEec---CChhhh--hc----------
Confidence 99999 88 6777666665555 59999999999832 67899987 888762 22
Q ss_pred hCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCC-CCCHHHH
Q 012815 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP-ILNPLEL 299 (456)
Q Consensus 221 ~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp-~lt~~eL 299 (456)
+ .+|.+++||+..+ ++.++.|++.++|||+++++|++|. +.+++|++.++ +|++ -+=.++++-- .|=..|+
T Consensus 147 ~-GGykvqGr~~~~a----~~l~~dA~ale~AGaf~ivlE~Vp~-~lA~~IT~~ls-iPtI-GIGAG~~cDGQvLV~~D~ 218 (268)
T COG0413 147 L-GGYKVQGRTEESA----EKLLEDAKALEEAGAFALVLECVPA-ELAKEITEKLS-IPTI-GIGAGPGCDGQVLVMHDM 218 (268)
T ss_pred c-CCeeeecCCHHHH----HHHHHHHHHHHhcCceEEEEeccHH-HHHHHHHhcCC-CCEE-eecCCCCCCceEEEeeec
Confidence 2 4899999998765 5778999999999999999999986 58889999888 7764 2212111100 0111121
Q ss_pred HhcCCCEEeccc------hHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 012815 300 EELGFKLVAYPL------SLIGVSVRAMQDALTAIKGGRIPSPGSMP 340 (456)
Q Consensus 300 ~elGv~~Vs~p~------~ll~aa~~A~~~~l~~i~~g~~~~~~~~~ 340 (456)
+|...=-.|- .+-.....|+++.....+.|.+|......
T Consensus 219 --lGl~~~~~PkFvK~y~~l~~~i~~A~~~Y~~eV~~g~FP~~~H~f 263 (268)
T COG0413 219 --LGLSGGHKPKFVKRYADLGEEIRAAVKQYAAEVKSGTFPEEEHSF 263 (268)
T ss_pred --cccCCCCCCcHHHHHhcchHHHHHHHHHHHHHHhcCCCCCcccce
Confidence 1221111111 12334566778888888888888765433
No 23
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=99.74 E-value=3e-17 Score=158.42 Aligned_cols=181 Identities=18% Similarity=0.221 Sum_probs=148.9
Q ss_pred HHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCc-EE
Q 012815 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIP-VI 154 (456)
Q Consensus 77 ~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iP-VI 154 (456)
...+||+.+..++++.|.++||+.+|+++..+|+|.++++ |++|. ++|+..+..++++||++|++.++|+..-| |+
T Consensus 26 Ti~~lRqk~~~g~p~t~~TAYD~~~a~~~~~ag~dv~LVGDSl~Mt--~~GhdtTlpiSl~e~~yH~~sV~Rga~~~llv 103 (306)
T KOG2949|consen 26 TITTLRQKHRAGEPITMVTAYDYPSAVHFDTAGIDVCLVGDSLAMT--VHGHDTTLPISLEEMLYHCRSVARGAKRPLLV 103 (306)
T ss_pred eHHHHHHHHhcCCceEEEEecccchhhhhhhcCCcEEEeccchhhe--eeccccceeeeHHHHHHHHHHHHccCCCceEE
Confidence 3678999999999999999999999999999999999999 88875 69998899999999999999999998755 78
Q ss_pred EeCCCC-CC-CH-HHHHHHHHHHHHhCccEEEeCCCCC-------------CCCccCCCCccccCHHHHHHHHHHHHHHh
Q 012815 155 GDGDNG-YG-NA-MNVKRTVKGYIKAGFAGIILEDQVS-------------PKGCGHTRGRKVVSREEAVMRIKAAVDAR 218 (456)
Q Consensus 155 aD~DtG-YG-~~-~nv~rtVk~l~~AGaaGI~IEDq~~-------------pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar 218 (456)
+|+++| |- +- ..+..+++-|.++|+..|+||.+.. .+..||.+ |.|+..
T Consensus 104 ~DlPFgtyeS~~sda~knAv~vmk~~g~~~vK~EgGs~~~~~~~~~l~ergipV~gHvG---LTPQ~v------------ 168 (306)
T KOG2949|consen 104 GDLPFGTYESSWSDAVKNAVRVMKEGGMDAVKLEGGSNSRITAAKRLVERGIPVMGHVG---LTPQAV------------ 168 (306)
T ss_pred EecCcccccccHHHHHHHHHHHHHhcCCceEEEccCcHHHHHHHHHHHHcCCceeeecc---CChhhh------------
Confidence 999999 73 33 4566667777789999999999852 34556665 555431
Q ss_pred HhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCcee
Q 012815 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKM 281 (456)
Q Consensus 219 ~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~ 281 (456)
..+| +|.+++|.-+.+ .+.++-|.+++++||..|++|++|. ..++.++..++ +|+.
T Consensus 169 ~~lG-Gyk~QGr~~~~a----~~l~EtAmqLqk~Gc~svvlECvP~-~~A~~iTs~ls-iPTI 224 (306)
T KOG2949|consen 169 SVLG-GYKPQGRNIASA----VKLVETAMQLQKAGCFSVVLECVPP-PVAAAITSALS-IPTI 224 (306)
T ss_pred hhcc-CcCccchhHHHH----HHHHHHHHHHHhcccceEeeecCCh-HHHHHHHhccC-Ccce
Confidence 2244 899999876654 4678999999999999999999986 37777888777 7764
No 24
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=98.01 E-value=0.00018 Score=72.05 Aligned_cols=164 Identities=22% Similarity=0.262 Sum_probs=94.3
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCC-CCCCHH----HHHHHHHHHHhcc-CC
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDT-GFISYG----EMVDQGQLITQAV-SI 151 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~-~~lt~~----Eml~~~r~I~ra~-~i 151 (456)
-++||+..+++++++.-++-.++||+.+|+.|.|-|.+=..+--- +.|.+.. +++++. -+++.++.|.-.+ +.
T Consensus 4 l~~l~~~i~~~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR-~~G~~SlagllpygnaN~iv~em~~eiLp~v~~t 82 (268)
T PF09370_consen 4 LDRLRAQIKAGKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRFR-MAGRGSLAGLLPYGNANEIVMEMAREILPVVKDT 82 (268)
T ss_dssp HHHHHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHH-HTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS
T ss_pred HHHHHHHHhCCCceEEEeeccchhhHHHHhcCCCEEEEecchhHh-hCCCcchhhhhcccCHhHHHHHHHHhhhhhccCC
Confidence 367999999999999999999999999999999988775333321 3466664 445543 3455667777666 49
Q ss_pred cEEEeCCCCCCCH-HHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHH----HHHHHHHHHHHhHhhCCCeE
Q 012815 152 PVIGDGDNGYGNA-MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREE----AVMRIKAAVDARKESGSDIV 226 (456)
Q Consensus 152 PVIaD~DtGYG~~-~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee----~v~kI~AA~~Ar~~~G~dfv 226 (456)
||++=.=.. +| .++.+-.+++.+.|.+||+= +|- .|+.+|+---..|| +-.-+..++.|++ -|++
T Consensus 83 PViaGv~at--DP~~~~~~fl~~lk~~Gf~GV~N----fPT-vgliDG~fR~~LEe~Gmgy~~EVemi~~A~~---~gl~ 152 (268)
T PF09370_consen 83 PVIAGVCAT--DPFRDMDRFLDELKELGFSGVQN----FPT-VGLIDGQFRQNLEETGMGYDREVEMIRKAHE---KGLF 152 (268)
T ss_dssp -EEEEE-TT---TT--HHHHHHHHHHHT-SEEEE-----S--GGG--HHHHHHHHHTT--HHHHHHHHHHHHH---TT-E
T ss_pred CEEEEecCc--CCCCcHHHHHHHHHHhCCceEEE----CCc-ceeeccHHHHHHHhcCCCHHHHHHHHHHHHH---CCCe
Confidence 999843221 45 57888889999999999953 332 35555521111111 2233444444554 2566
Q ss_pred EEEecchhhcccHHHHHHHHHHhHhcCCCEEEecc
Q 012815 227 IVARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (456)
Q Consensus 227 IiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~ 261 (456)
=++=.-. -+.|++..+||||+|+++-
T Consensus 153 T~~yvf~---------~e~A~~M~~AGaDiiv~H~ 178 (268)
T PF09370_consen 153 TTAYVFN---------EEQARAMAEAGADIIVAHM 178 (268)
T ss_dssp E--EE-S---------HHHHHHHHHHT-SEEEEE-
T ss_pred eeeeecC---------HHHHHHHHHcCCCEEEecC
Confidence 5554322 2568888999999999884
No 25
>PRK08185 hypothetical protein; Provisional
Probab=98.01 E-value=0.0019 Score=65.46 Aligned_cols=215 Identities=17% Similarity=0.200 Sum_probs=141.8
Q ss_pred HHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEE
Q 012815 80 SLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (456)
Q Consensus 80 ~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIa 155 (456)
-|....+.+-.+-+.|+||.-+++.+ |+.+.+.|...+-+.. ...| .++...++.+++..++||.+
T Consensus 4 ~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~-~~~~---------~~~~~~~~~~a~~~~vPV~l 73 (283)
T PRK08185 4 LLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNEL-DFLG---------DNFFAYVRERAKRSPVPFVI 73 (283)
T ss_pred HHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchh-hhcc---------HHHHHHHHHHHHHCCCCEEE
Confidence 45555556666889999999998865 6678998886654322 1112 23777788888888999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCC----eEEEEec
Q 012815 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----IVIVART 231 (456)
Q Consensus 156 D~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~d----fvIiART 231 (456)
=.|+|. + .+.+++.+++|...|.|... | .|.+|-+++-+.+++-++..|.. +=.++-.
T Consensus 74 HLDHg~-~----~e~i~~ai~~Gf~SVM~D~S-------~------l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~ 135 (283)
T PRK08185 74 HLDHGA-T----IEDVMRAIRCGFTSVMIDGS-------L------LPYEENVALTKEVVELAHKVGVSVEGELGTIGNT 135 (283)
T ss_pred ECCCCC-C----HHHHHHHHHcCCCEEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCc
Confidence 999995 3 34456777899999999544 2 36788888877777655543311 1111111
Q ss_pred chhhcccHHH----HHHHHHHhHhc-CCCEEEe-----ccC------C--CHHHHHHHHHhCCCCceeeeeeccCCCCCC
Q 012815 232 DSRQALSLEE----SLRRSRAFADA-GADVLFI-----DAL------A--SKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (456)
Q Consensus 232 DA~~~~~lde----AI~RakAy~eA-GAD~Ifi-----e~~------~--s~eei~~i~~~v~~vP~~~N~~~~~g~tp~ 293 (456)
+.....+.++ -.+.|+.|.+. |+|++-+ +++ + +.+.++++.+.++ +|+. +.++...|.
T Consensus 136 e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~-iPLV---lHGgsg~~~ 211 (283)
T PRK08185 136 GTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD-IPLV---LHGGSANPD 211 (283)
T ss_pred ccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC-CCEE---EECCCCCCH
Confidence 1000000000 23456777766 9999999 554 1 4688889988875 6753 444333332
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 294 lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
-.....-++|++-|=+...+..+.++++++.+.
T Consensus 212 e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~ 244 (283)
T PRK08185 212 AEIAESVQLGVGKINISSDMKYAFFKKVREILS 244 (283)
T ss_pred HHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHH
Confidence 223445579999999999999999999988864
No 26
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.01 E-value=0.00065 Score=65.55 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhc--ccHHH
Q 012815 164 AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA--LSLEE 241 (456)
Q Consensus 164 ~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~--~~lde 241 (456)
.......+++..++||++|.+.... |. .+.++..+.+++++++.+..|..++|....+.... ..-.+
T Consensus 75 ~~~~~~~v~~a~~~Ga~~v~~~~~~-----~~------~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~ 143 (235)
T cd00958 75 DKVLVASVEDAVRLGADAVGVTVYV-----GS------EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPD 143 (235)
T ss_pred chhhhcCHHHHHHCCCCEEEEEEec-----CC------chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHH
Confidence 3455566888999999999887753 11 12467788888888877777778888555532110 01246
Q ss_pred HHHH-HHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCC-CCCCC-----CHHHHHhcCCCEEeccchHH
Q 012815 242 SLRR-SRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGG-KTPIL-----NPLELEELGFKLVAYPLSLI 314 (456)
Q Consensus 242 AI~R-akAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g-~tp~l-----t~~eL~elGv~~Vs~p~~ll 314 (456)
.+++ ++.+.++|||.|.+....+.+.++++++..+ +|+. +. + | +.... ..+++.+.|++.|+++..++
T Consensus 144 ~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~~-~pvv--~~-G-G~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~ 218 (235)
T cd00958 144 LIAYAARIGAELGADIVKTKYTGDAESFKEVVEGCP-VPVV--IA-G-GPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIF 218 (235)
T ss_pred HHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhcCC-CCEE--Ee-C-CCCCCCHHHHHHHHHHHHHcCCcEEEechhhh
Confidence 6777 8999999999999986667889999998876 5642 22 3 3 11111 15788999999999998877
Q ss_pred HH
Q 012815 315 GV 316 (456)
Q Consensus 315 ~a 316 (456)
.+
T Consensus 219 ~~ 220 (235)
T cd00958 219 QR 220 (235)
T ss_pred cC
Confidence 43
No 27
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.93 E-value=0.0026 Score=63.73 Aligned_cols=205 Identities=17% Similarity=0.193 Sum_probs=123.2
Q ss_pred ceeecccCC--hHHHHHHHHhCCcEEEecchHHhh-----------------hhcccCCCCCCCHHHHHHHHHHHHhccC
Q 012815 90 VHQGPACFD--ALSAKLVEKSGFSFCFTSGFSISA-----------------ARLALPDTGFISYGEMVDQGQLITQAVS 150 (456)
Q Consensus 90 ~lv~pgayD--alSArl~e~aGfdAI~vSG~avSa-----------------s~lG~PD~~~lt~~Eml~~~r~I~ra~~ 150 (456)
.+..||.+| .--.+.+.+.|+.++.+.+..... ...|++.. ..+..+++.+...+..+
T Consensus 14 i~~aag~~~~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~---g~~~~~~~~~~~~~~~~ 90 (300)
T TIGR01037 14 LILASGIMGSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNP---GVEAFLEELKPVREEFP 90 (300)
T ss_pred CEeCCcCCCCCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCc---CHHHHHHHHHHHhccCC
Confidence 345565444 344555667799888885433221 12344442 45666666666555567
Q ss_pred CcEEEeCCCCCC-CHHHHHHHHHHHHHhC--ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEE
Q 012815 151 IPVIGDGDNGYG-NAMNVKRTVKGYIKAG--FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI 227 (456)
Q Consensus 151 iPVIaD~DtGYG-~~~nv~rtVk~l~~AG--aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvI 227 (456)
.||++-. +| +++...+.++.++++| +++|-|-=.. |...|. +..-.-+++...+-+++++++. ++-|
T Consensus 91 ~pl~~qi---~g~~~~~~~~~a~~~~~~~~~~d~ielN~~c-P~~~~~-g~~l~~~~~~~~eiv~~vr~~~-----~~pv 160 (300)
T TIGR01037 91 TPLIASV---YGSSVEEFAEVAEKLEKAPPYVDAYELNLSC-PHVKGG-GIAIGQDPELSADVVKAVKDKT-----DVPV 160 (300)
T ss_pred CcEEEEe---ecCCHHHHHHHHHHHHhccCccCEEEEECCC-CCCCCC-ccccccCHHHHHHHHHHHHHhc-----CCCE
Confidence 8998877 34 5778889999998874 9999987442 222121 1111234455555555555442 4556
Q ss_pred EEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC--------C---------------------CHHHHHHHHHhCCCC
Q 012815 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDAL--------A---------------------SKEEMKAFCEISPLV 278 (456)
Q Consensus 228 iARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~--------~---------------------s~eei~~i~~~v~~v 278 (456)
..|.-. .+++.++-+++..++|+|.|.+... . ..+.+.++.+.++ +
T Consensus 161 ~vKi~~----~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-i 235 (300)
T TIGR01037 161 FAKLSP----NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD-I 235 (300)
T ss_pred EEECCC----ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC-C
Confidence 666532 4567888899999999999987420 0 0245666777665 7
Q ss_pred ceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 279 PKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 279 P~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
|+..| ||-...-+..++-+.|...|.++..++.-
T Consensus 236 pvi~~----GGI~s~~da~~~l~~GAd~V~igr~~l~~ 269 (300)
T TIGR01037 236 PIIGV----GGITSFEDALEFLMAGASAVQVGTAVYYR 269 (300)
T ss_pred CEEEE----CCCCCHHHHHHHHHcCCCceeecHHHhcC
Confidence 77654 34221123455556899998888776644
No 28
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.90 E-value=0.0014 Score=66.40 Aligned_cols=186 Identities=22% Similarity=0.187 Sum_probs=120.4
Q ss_pred HHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec---chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEe
Q 012815 80 SLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (456)
Q Consensus 80 ~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vS---G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD 156 (456)
-|-++++.+ +..-+-++-+|+++|++|.-++..= -+-+- .+ +.+..-.=...++.|.+++++|||+=
T Consensus 4 ~~a~~~kgg---vimdv~~~eqa~iae~aga~avm~le~~p~d~r------~~-ggv~R~~~p~~I~~I~~~V~iPVig~ 73 (287)
T TIGR00343 4 GLAQMLKGG---VIMDVVNPEQAKIAEEAGAVAVMALERVPADIR------AS-GGVARMSDPKMIKEIMDAVSIPVMAK 73 (287)
T ss_pred hHHHHhcCC---eEEEeCCHHHHHHHHHcCceEEEeeccCchhhH------hc-CCeeecCCHHHHHHHHHhCCCCEEEE
Confidence 366777654 4457788999999999999887752 11111 11 22333333567889999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhc
Q 012815 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA 236 (456)
Q Consensus 157 ~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~ 236 (456)
.--|| ..-++.++++|++-| |.+ ..+.|.+++...++.- .+..|+ + |+.
T Consensus 74 ~kigh------~~Ea~~L~~~GvDiI---DeT----------e~lrPade~~~~~K~~------f~vpfm--a--d~~-- 122 (287)
T TIGR00343 74 VRIGH------FVEAQILEALGVDYI---DES----------EVLTPADWTFHIDKKK------FKVPFV--C--GAR-- 122 (287)
T ss_pred eeccH------HHHHHHHHHcCCCEE---Ecc----------CCCCcHHHHHHHHHHH------cCCCEE--c--cCC--
Confidence 88888 666788999999999 543 2356777777776532 122333 2 221
Q ss_pred ccHHHHHHHHHHhHhcCCCEEEecc----------------------------------------CCCHHHHHHHHHhCC
Q 012815 237 LSLEESLRRSRAFADAGADVLFIDA----------------------------------------LASKEEMKAFCEISP 276 (456)
Q Consensus 237 ~~ldeAI~RakAy~eAGAD~Ifie~----------------------------------------~~s~eei~~i~~~v~ 276 (456)
.++||++|. +.|||+|=--+ -++.+.++++++...
T Consensus 123 -~l~EAlrai----~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~ 197 (287)
T TIGR00343 123 -DLGEALRRI----NEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGK 197 (287)
T ss_pred -CHHHHHHHH----HCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCC
Confidence 256777765 48888875431 123456666666654
Q ss_pred CCceeeeeeccCCC-CCCCCHHHHHhcCCCEEeccchHHH
Q 012815 277 LVPKMANMLEGGGK-TPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 277 ~vP~~~N~~~~~g~-tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
+|+ +|.-++ |- +| -....+.++|+.-|..+...+.
T Consensus 198 -iPV-V~fAiG-GI~TP-edAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 198 -LPV-VNFAAG-GVATP-ADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred -CCE-EEeccC-CCCCH-HHHHHHHHcCCCEEEEhHHhhc
Confidence 674 455554 32 33 2346788899999999998864
No 29
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.89 E-value=0.0055 Score=61.89 Aligned_cols=212 Identities=17% Similarity=0.182 Sum_probs=143.1
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC-CcE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPV 153 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~-iPV 153 (456)
+-|+...+.+-.+.+.|+||.-+++.+ |+.+.+.|...+-... .+. -.+..+...++.+++..+ +||
T Consensus 6 ~~l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~----~~~----~~~~~~~~~~~~~a~~~~~vpv 77 (282)
T TIGR01859 6 EILQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAI----KYM----GGYKMAVAMVKTLIERMSIVPV 77 (282)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchh----hcc----CcHHHHHHHHHHHHHHCCCCeE
Confidence 445555566667889999999988765 5668998886543321 111 025678888899999888 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecch
Q 012815 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS 233 (456)
Q Consensus 154 IaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA 233 (456)
..-.|.|. + .+.+++.+++|+..|+|... | .|.+|.+++.+.+++-.+..|. -|-+-...
T Consensus 78 ~lhlDH~~-~----~e~i~~ai~~Gf~sVmid~s-------~------l~~~eni~~t~~v~~~a~~~gv--~Ve~ElG~ 137 (282)
T TIGR01859 78 ALHLDHGS-S----YESCIKAIKAGFSSVMIDGS-------H------LPFEENLALTKKVVEIAHAKGV--SVEAELGT 137 (282)
T ss_pred EEECCCCC-C----HHHHHHHHHcCCCEEEECCC-------C------CCHHHHHHHHHHHHHHHHHcCC--EEEEeeCC
Confidence 99999994 3 45666778899999999554 2 2667777777777766554432 22211111
Q ss_pred ------------hhcccHHHHHHHHHHhHh-cCCCEEEe-----ccC------CCHHHHHHHHHhCCCCceeeeeeccCC
Q 012815 234 ------------RQALSLEESLRRSRAFAD-AGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGG 289 (456)
Q Consensus 234 ------------~~~~~ldeAI~RakAy~e-AGAD~Ifi-----e~~------~s~eei~~i~~~v~~vP~~~N~~~~~g 289 (456)
....+. +.++.+.+ .|+|.+-+ ++. -+.+.++++++.++ +|+. +.++.
T Consensus 138 ~gg~ed~~~g~~~~~t~~----eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~-iPlv---~hGgS 209 (282)
T TIGR01859 138 LGGIEDGVDEKEAELADP----DEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN-IPLV---LHGAS 209 (282)
T ss_pred CcCccccccccccccCCH----HHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC-CCEE---EECCC
Confidence 111233 44566665 89999985 211 25688999998876 6753 23321
Q ss_pred CCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 290 KTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 290 ~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
..|.-...++-+.|++-|-+...+..+...++++.+.
T Consensus 210 Gi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~~ 246 (282)
T TIGR01859 210 GIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLT 246 (282)
T ss_pred CCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHHH
Confidence 2332334666789999999999999999999988764
No 30
>PRK06801 hypothetical protein; Provisional
Probab=97.88 E-value=0.0034 Score=63.65 Aligned_cols=217 Identities=17% Similarity=0.218 Sum_probs=144.6
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI 154 (456)
+-|....+.+-.+-+.|+||.-+++.+ |+.+.+.|.-.+-... . ..+++.+...++.+++..++||.
T Consensus 8 ~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~----~-----~~~~~~~~~~~~~~a~~~~vpV~ 78 (286)
T PRK06801 8 NGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHF----K-----YISLESLVEAVKFEAARHDIPVV 78 (286)
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchh----h-----cCCHHHHHHHHHHHHHHCCCCEE
Confidence 345555555556889999999998865 5568888876543321 1 25678889999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCe----EEEEe
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI----VIVAR 230 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~df----vIiAR 230 (456)
+=.|+|. + .+.+++.+++|+..|.+ |.. | .|.+|-+++-+.+++-++..|.+. =-++.
T Consensus 79 lHlDH~~-~----~e~i~~Ai~~GftSVm~-D~S------~------l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg 140 (286)
T PRK06801 79 LNLDHGL-H----FEAVVRALRLGFSSVMF-DGS------T------LEYEENVRQTREVVKMCHAVGVSVEAELGAVGG 140 (286)
T ss_pred EECCCCC-C----HHHHHHHHHhCCcEEEE-cCC------C------CCHHHHHHHHHHHHHHHHHcCCeEEeecCcccC
Confidence 9999985 3 34466778899999999 432 2 366788888777777665444211 01222
Q ss_pred cchh---hc--ccHHHHHHHHHHhH-hcCCCEEEec-----c------CCCHHHHHHHHHhCCCCceeeeeeccCCCCCC
Q 012815 231 TDSR---QA--LSLEESLRRSRAFA-DAGADVLFID-----A------LASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (456)
Q Consensus 231 TDA~---~~--~~ldeAI~RakAy~-eAGAD~Ifie-----~------~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~ 293 (456)
.|.. .. ...---.+.++.|. +.|+|.+-+. + .-+.+.++++.+.++ +|+. +.++...|.
T Consensus 141 ~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~-~PLV---lHGGSgi~~ 216 (286)
T PRK06801 141 DEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTG-LPLV---LHGGSGISD 216 (286)
T ss_pred CCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcC-CCEE---EECCCCCCH
Confidence 2211 00 00000124566666 7899999871 1 135678888888776 6753 444333343
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 294 lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
-...++-++|++-|-+...+..+...++++.+.
T Consensus 217 e~~~~~i~~Gi~KINv~T~~~~a~~~~~~~~~~ 249 (286)
T PRK06801 217 ADFRRAIELGIHKINFYTGMSQAALAAVEQRMT 249 (286)
T ss_pred HHHHHHHHcCCcEEEehhHHHHHHHHHHHHHHH
Confidence 334666789999999999999999999888763
No 31
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.83 E-value=0.00088 Score=66.10 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh-cccHHHHHHH
Q 012815 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-ALSLEESLRR 245 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~-~~~ldeAI~R 245 (456)
....+++.++.||++|++.+.. |. .+..++++.++++++..++.|..++|+.=.|... ...-.+.+++
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~-----g~------~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~ 160 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNV-----GS------DTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAH 160 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEec-----CC------chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHH
Confidence 4566889999999999999874 21 1235677888888888776676777744332211 1111356777
Q ss_pred -HHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCC-CC-----CCHHHHHhcCCCEEeccchHHHH
Q 012815 246 -SRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKT-PI-----LNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 246 -akAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~t-p~-----lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
++.+.++|||.|......+.+.++++++..+ +|+. .+ + |-+ .. -..+++.+.|+..++++..++.+
T Consensus 161 ~~~~a~~~GADyikt~~~~~~~~l~~~~~~~~-iPVv--a~-G-Gi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 161 AARLGAELGADIVKTPYTGDIDSFRDVVKGCP-APVV--VA-G-GPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHHHCCCEEeccCCCCHHHHHHHHHhCC-CcEE--Ee-c-CCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 6899999999999987667889999988765 5653 22 3 322 11 02467779999999998887765
No 32
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.80 E-value=0.0022 Score=64.81 Aligned_cols=185 Identities=22% Similarity=0.200 Sum_probs=122.2
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec---chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeC
Q 012815 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (456)
Q Consensus 81 Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vS---G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~ 157 (456)
|-++|+.+ +...+-++-+|+++|++|.-++.+= -+-+= -.+.+-.-.=+.+++.|.+.+++|||+=.
T Consensus 3 ~~~~~~~g---~~~~v~~~~qa~~ae~aga~~v~~~~~~~~~~~-------~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~ 72 (283)
T cd04727 3 FAQMLKGG---VIMDVTNAEQARIAEEAGAVAVMALERVPADIR-------AAGGVARMADPKMIKEIMDAVSIPVMAKV 72 (283)
T ss_pred HHHHhcCC---eEEEeCCHHHHHHHHHcCceEEeeeccCchhhh-------hcCCeeecCCHHHHHHHHHhCCCCeEEee
Confidence 55667654 4457889999999999999888762 00110 01223333335678899999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcc
Q 012815 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL 237 (456)
Q Consensus 158 DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~ 237 (456)
--|| ++-++.++++|++-| |-+ ..+.|.++++..++.- . +..++|=+..
T Consensus 73 K~~~------~~Ea~~L~eaGvDiI---DaT----------~r~rP~~~~~~~iK~~------~--~~l~MAD~st---- 121 (283)
T cd04727 73 RIGH------FVEAQILEALGVDMI---DES----------EVLTPADEEHHIDKHK------F--KVPFVCGARN---- 121 (283)
T ss_pred ehhH------HHHHHHHHHcCCCEE---ecc----------CCCCcHHHHHHHHHHH------c--CCcEEccCCC----
Confidence 8887 777889999999999 542 1234567787777532 1 4555654433
Q ss_pred cHHHHHHHHHHhHhcCCCEEEecc---------------------------------------CCCHHHHHHHHHhCCCC
Q 012815 238 SLEESLRRSRAFADAGADVLFIDA---------------------------------------LASKEEMKAFCEISPLV 278 (456)
Q Consensus 238 ~ldeAI~RakAy~eAGAD~Ifie~---------------------------------------~~s~eei~~i~~~v~~v 278 (456)
++|++++ .++|||+|=-.. -++.+.++++++..+ +
T Consensus 122 -leEal~a----~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~-i 195 (283)
T cd04727 122 -LGEALRR----ISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGR-L 195 (283)
T ss_pred -HHHHHHH----HHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcC-C
Confidence 4566665 459999985442 124466788888765 6
Q ss_pred ceeeeeeccCCC-CCCCCHHHHHhcCCCEEeccchHHH
Q 012815 279 PKMANMLEGGGK-TPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 279 P~~~N~~~~~g~-tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
|+. |+-++ |- +| -...++.++|+.-|..+..++.
T Consensus 196 PVV-~iAeG-GI~Tp-ena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 196 PVV-NFAAG-GVATP-ADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CeE-EEEeC-CCCCH-HHHHHHHHcCCCEEEEcHHhhc
Confidence 753 23343 32 32 2356788899999999988864
No 33
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=97.80 E-value=0.00079 Score=68.26 Aligned_cols=186 Identities=23% Similarity=0.215 Sum_probs=120.5
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCC----CCCCHHHHHHHHHHHHhccCCcEE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDT----GFISYGEMVDQGQLITQAVSIPVI 154 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~----~~lt~~Eml~~~r~I~ra~~iPVI 154 (456)
.-|-++++.+ +..-+-++-.|+++|++|+++|.+= .|.|.- +.+.+-.-...++.|.+++++|||
T Consensus 10 ~g~a~m~kgg---vimdv~~~~~a~iae~~g~~~v~~~--------~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVi 78 (293)
T PRK04180 10 RGFAEMLKGG---VIMDVVNAEQAKIAEEAGAVAVMAL--------ERVPADIRAAGGVARMADPKMIEEIMDAVSIPVM 78 (293)
T ss_pred HHHHHHhcCC---eEEEeCCHHHHHHHHHhChHHHHHc--------cCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeE
Confidence 3577777755 4457788999999999999876541 233321 122232334566788899999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~ 234 (456)
+=.--|| +.-++.++++|++-| |.+ ..+.|.+++...++.- . +..+++=++
T Consensus 79 gk~Righ------~~Ea~~L~~~GvDiI---D~T----------e~lrpad~~~~~~K~~------f--~~~fmad~~-- 129 (293)
T PRK04180 79 AKARIGH------FVEAQILEALGVDYI---DES----------EVLTPADEEYHIDKWD------F--TVPFVCGAR-- 129 (293)
T ss_pred EeehhhH------HHHHHHHHHcCCCEE---ecc----------CCCCchHHHHHHHHHH------c--CCCEEccCC--
Confidence 9888887 666788999999999 542 2356677777666532 1 223333222
Q ss_pred hcccHHHHHHHHHHhHhcCCCEEEec---------------------------------------cCCCHHHHHHHHHhC
Q 012815 235 QALSLEESLRRSRAFADAGADVLFID---------------------------------------ALASKEEMKAFCEIS 275 (456)
Q Consensus 235 ~~~~ldeAI~RakAy~eAGAD~Ifie---------------------------------------~~~s~eei~~i~~~v 275 (456)
.++||++|. ++|||+|=-- .-++.+.++++++..
T Consensus 130 ---~l~EAlrai----~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~ 202 (293)
T PRK04180 130 ---NLGEALRRI----AEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG 202 (293)
T ss_pred ---CHHHHHHHH----HCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC
Confidence 256666664 4888887654 113456677777766
Q ss_pred CCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012815 276 PLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (456)
Q Consensus 276 ~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll 314 (456)
. +|+ +|+.+++=.+| -...++.++|+.-|..+...+
T Consensus 203 ~-iPV-V~~AeGGI~TP-edaa~vme~GAdgVaVGSaI~ 238 (293)
T PRK04180 203 R-LPV-VNFAAGGIATP-ADAALMMQLGADGVFVGSGIF 238 (293)
T ss_pred C-CCE-EEEEeCCCCCH-HHHHHHHHhCCCEEEEcHHhh
Confidence 5 674 45555522133 235678889999999998876
No 34
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.75 E-value=0.007 Score=60.79 Aligned_cols=200 Identities=16% Similarity=0.202 Sum_probs=122.5
Q ss_pred cccCCh--HHHHHHHHhCCcEEEecchHHhhhhcccCCC---------------CCCCHHHHHHHHHHHHhccCCcEEEe
Q 012815 94 PACFDA--LSAKLVEKSGFSFCFTSGFSISAARLALPDT---------------GFISYGEMVDQGQLITQAVSIPVIGD 156 (456)
Q Consensus 94 pgayDa--lSArl~e~aGfdAI~vSG~avSas~lG~PD~---------------~~lt~~Eml~~~r~I~ra~~iPVIaD 156 (456)
.|.+|. -..+.++++||-++-+.+...- -..|.|.- .....+++++..+...+..+.||++-
T Consensus 19 ag~~~~~~~~~~~~~~~g~g~v~~kti~~~-~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~i~s 97 (301)
T PRK07259 19 SGTFGFGGEYARFYDLNGLGAIVTKSTTLE-PREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDTPIIAN 97 (301)
T ss_pred CcCCCCCHHHHHHhhhcCCcEEEeCCCCCC-CCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCCcEEEE
Confidence 344543 3355566789988888875543 23455531 11345677777666555568999997
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-ccEEEeCCCCCCCCccCCC--Cccc-cCHHHHHHHHHHHHHHhHhhCCCeEEEEecc
Q 012815 157 GDNGYGNAMNVKRTVKGYIKAG-FAGIILEDQVSPKGCGHTR--GRKV-VSREEAVMRIKAAVDARKESGSDIVIVARTD 232 (456)
Q Consensus 157 ~DtGYG~~~nv~rtVk~l~~AG-aaGI~IEDq~~pK~CGH~~--gk~l-vp~ee~v~kI~AA~~Ar~~~G~dfvIiARTD 232 (456)
+ .|+ +++...+.++++.++| +++|-|-=. |-|.. |..+ -..+...+-|++++++. ++-|..|.-
T Consensus 98 i-~g~-~~~~~~~~a~~~~~aG~~D~iElN~~-----cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-----~~pv~vKl~ 165 (301)
T PRK07259 98 V-AGS-TEEEYAEVAEKLSKAPNVDAIELNIS-----CPNVKHGGMAFGTDPELAYEVVKAVKEVV-----KVPVIVKLT 165 (301)
T ss_pred e-ccC-CHHHHHHHHHHHhccCCcCEEEEECC-----CCCCCCCccccccCHHHHHHHHHHHHHhc-----CCCEEEEcC
Confidence 7 232 4678889999999999 999988543 33321 2222 24444444455554442 455666643
Q ss_pred hhhcccHHHHHHHHHHhHhcCCCEEEec----cC-------------------------CCHHHHHHHHHhCCCCceeee
Q 012815 233 SRQALSLEESLRRSRAFADAGADVLFID----AL-------------------------ASKEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 233 A~~~~~ldeAI~RakAy~eAGAD~Ifie----~~-------------------------~s~eei~~i~~~v~~vP~~~N 283 (456)
. .+++.++-++...++|+|.|.+. +. ...+.++++.+.++ +|+..|
T Consensus 166 ~----~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~-ipvi~~ 240 (301)
T PRK07259 166 P----NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVD-IPIIGM 240 (301)
T ss_pred C----CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCC-CCEEEE
Confidence 2 23577788889999999988652 11 02356677777765 777654
Q ss_pred eeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 284 MLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 284 ~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
+|-...-...++-+.|...|..+..++.
T Consensus 241 ----GGI~~~~da~~~l~aGAd~V~igr~ll~ 268 (301)
T PRK07259 241 ----GGISSAEDAIEFIMAGASAVQVGTANFY 268 (301)
T ss_pred ----CCCCCHHHHHHHHHcCCCceeEcHHHhc
Confidence 3432222345666689998888777665
No 35
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.74 E-value=0.0079 Score=59.75 Aligned_cols=164 Identities=18% Similarity=0.156 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHhc-cCCcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCC-cc-ccCHHHHH
Q 012815 133 ISYGEMVDQGQLITQA-VSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRG-RK-VVSREEAV 208 (456)
Q Consensus 133 lt~~Eml~~~r~I~ra-~~iPVIaD~DtGYG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~g-k~-lvp~ee~v 208 (456)
...+++++.++...+. .+.||++-+ .| +++...+.++.++++|+++|-|-=. |-|... +. ....+...
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~pvi~si---~g~~~~~~~~~a~~~~~~G~d~ielN~~-----cP~~~~~~~~~~~~~~~~ 151 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQPLIASV---GGSSKEDYVELARKIERAGAKALELNLS-----CPNVGGGRQLGQDPEAVA 151 (289)
T ss_pred cCHHHHHHHHHHHHhccCCCeEEEEe---ccCCHHHHHHHHHHHHHhCCCEEEEEcC-----CCCCCCCcccccCHHHHH
Confidence 3567777777776655 579999875 23 5678889999999999999988544 434321 22 22334444
Q ss_pred HHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCC-------------------------
Q 012815 209 MRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA------------------------- 263 (456)
Q Consensus 209 ~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~------------------------- 263 (456)
+-+++++++. +..+.+--++. ...++.++-+++..++|||.|.+.+..
T Consensus 152 eiv~~vr~~~---~~pv~vKl~~~----~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~ 224 (289)
T cd02810 152 NLLKAVKAAV---DIPLLVKLSPY----FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAP 224 (289)
T ss_pred HHHHHHHHcc---CCCEEEEeCCC----CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHH
Confidence 4455554432 23344444443 245688899999999999999986320
Q ss_pred ----CHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 264 ----SKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 264 ----s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
..+.++++.+.++ .+|+..+ +|-+..-...++-++|+..|..+..++.
T Consensus 225 ~~~~~~~~v~~i~~~~~~~ipiia~----GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 225 IRPLALRWVARLAARLQLDIPIIGV----GGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEE----CCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 1344566667664 3666543 3432222356666788888877766554
No 36
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=97.69 E-value=0.0011 Score=67.26 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
|.....+.++.+++.|++||.+ ||+++.-...+.||..+-+++++++.. .++-|++=+-+ .+.+++
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v--------~GstGE~~~Lt~eEr~~v~~~~~~~~~---grvpvi~Gv~~---~~t~~a 92 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILT--------MGTFGECATLTWEEKQAFVATVVETVA---GRVPVFVGATT---LNTRDT 92 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CcccccchhCCHHHHHHHHHHHHHHhC---CCCCEEEEecc---CCHHHH
Confidence 5678899999999999999998 556666678899999988888888753 35555655433 356899
Q ss_pred HHHHHHhHhcCCCEEEeccC----CCHHHHHH----HHHhCCCCceeeeeeccCCCC-CCCCHHHHHhc
Q 012815 243 LRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPKMANMLEGGGKT-PILNPLELEEL 302 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~----i~~~v~~vP~~~N~~~~~g~t-p~lt~~eL~el 302 (456)
+++++.+.++|||++++-.+ ++.+++.+ +++..+.+|+++ ...|..+ -.++++.+.+|
T Consensus 93 i~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~i--Yn~P~~tg~~l~~~~l~~L 159 (309)
T cd00952 93 IARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAI--YANPEAFKFDFPRAAWAEL 159 (309)
T ss_pred HHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEE--EcCchhcCCCCCHHHHHHH
Confidence 99999999999999987643 45555544 445553356542 2223222 14666655554
No 37
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.67 E-value=0.026 Score=57.32 Aligned_cols=213 Identities=21% Similarity=0.254 Sum_probs=142.4
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI 154 (456)
+-|....+.+--+.+.|+|+.-+++.+ |+.+.+.|...+-... ....++.+...++..++..++||.
T Consensus 8 ~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~---------~~~g~~~~~~~~~~~A~~~~vPV~ 78 (283)
T PRK07998 8 ILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNA---------QLSGYDYIYEIVKRHADKMDVPVS 78 (283)
T ss_pred HHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHH---------hhCCHHHHHHHHHHHHHHCCCCEE
Confidence 345555556656889999999998654 5668888886643321 123466677788888999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCe-EEEEec--
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVART-- 231 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~df-vIiART-- 231 (456)
+=.|.|. + .+.+++.+++|...|.+ |.. | .|.||-+++-+.+++-++..|... .=+++.
T Consensus 79 lHLDH~~-~----~e~i~~Ai~~GftSVM~-DgS------~------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg 140 (283)
T PRK07998 79 LHLDHGK-T----FEDVKQAVRAGFTSVMI-DGA------A------LPFEENIAFTKEAVDFAKSYGVPVEAELGAILG 140 (283)
T ss_pred EECcCCC-C----HHHHHHHHHcCCCEEEE-eCC------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCC
Confidence 9999984 3 34445567889999999 542 2 477888888888888776554211 011221
Q ss_pred --chh-h----cccHHHHHHHHHHhH-hcCCCEEEec-----cC---C--CHHHHHHHHHhCCCCceeeeeeccCCCCCC
Q 012815 232 --DSR-Q----ALSLEESLRRSRAFA-DAGADVLFID-----AL---A--SKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (456)
Q Consensus 232 --DA~-~----~~~ldeAI~RakAy~-eAGAD~Ifie-----~~---~--s~eei~~i~~~v~~vP~~~N~~~~~g~tp~ 293 (456)
|.. . -...++ ++.|. +.|+|++=+- |+ + +.+.++++.+.++ +|+. ++++..+|.
T Consensus 141 ~ed~~~~~~~~~T~pe~----a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~-vPLV---lHGgSG~~~ 212 (283)
T PRK07998 141 KEDDHVSEADCKTEPEK----VKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSP-VPLV---IHGGSGIPP 212 (283)
T ss_pred ccccccccccccCCHHH----HHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCC-CCEE---EeCCCCCCH
Confidence 110 0 123344 45555 6899987642 22 1 4688899988875 6754 455333332
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 294 lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
-...+.-+.|++-|-++..+..+..+++++.+.
T Consensus 213 e~~~~ai~~Gi~KiNi~Tel~~a~~~~~~~~l~ 245 (283)
T PRK07998 213 EILRSFVNYKVAKVNIASDLRKAFITTVGKAYV 245 (283)
T ss_pred HHHHHHHHcCCcEEEECHHHHHHHHHHHHHHHH
Confidence 223445679999999999999999999998864
No 38
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.61 E-value=0.039 Score=55.86 Aligned_cols=212 Identities=14% Similarity=0.161 Sum_probs=136.5
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI 154 (456)
+-|....+.+-.+-+.|+||.-+++.+ |+.+-+.|...+-.. .-| .+++.+...++..++..++||.
T Consensus 8 ~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~----~~~-----~~~~~~~~~~~~~a~~~~vpv~ 78 (281)
T PRK06806 8 ELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVR----LNH-----SPLHLIGPLMVAAAKQAKVPVA 78 (281)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcch----hcc-----CChHHHHHHHHHHHHHCCCCEE
Confidence 445555556666889999999998765 566888887654221 112 3455555666777788899999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEEEe
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVAR 230 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIiAR 230 (456)
+=.|+|. + .+.+++.+++|+..|++-+.. .|.+|.++.-+..++-.+..|. +..-++.
T Consensus 79 lHlDH~~-~----~e~i~~Al~~G~tsVm~d~s~-------------~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~ 140 (281)
T PRK06806 79 VHFDHGM-T----FEKIKEALEIGFTSVMFDGSH-------------LPLEENIQKTKEIVELAKQYGATVEAEIGRVGG 140 (281)
T ss_pred EECCCCC-C----HHHHHHHHHcCCCEEEEcCCC-------------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECC
Confidence 9999985 3 346667888999999996652 2557777776666665554332 2233332
Q ss_pred cchh------hcccHHHHHHHHHHhH-hcCCCEEEe-----cc------CCCHHHHHHHHHhCCCCceeeeeeccCCCCC
Q 012815 231 TDSR------QALSLEESLRRSRAFA-DAGADVLFI-----DA------LASKEEMKAFCEISPLVPKMANMLEGGGKTP 292 (456)
Q Consensus 231 TDA~------~~~~ldeAI~RakAy~-eAGAD~Ifi-----e~------~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp 292 (456)
.|.. ..... +.++.+. +.|+|.+-+ ++ .-+.+.++++.+.++ +|+. +.++...|
T Consensus 141 ~d~~~~~~g~s~t~~----eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~-iPlV---~hG~SGI~ 212 (281)
T PRK06806 141 SEDGSEDIEMLLTST----TEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH-IPLV---LHGGSGIS 212 (281)
T ss_pred ccCCcccccceeCCH----HHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC-CCEE---EECCCCCC
Confidence 2221 01233 4456665 469999977 11 236788999998876 6753 23311222
Q ss_pred CCCHHHHHhcCCCEEeccchHHHHHHHHHHHHH
Q 012815 293 ILNPLELEELGFKLVAYPLSLIGVSVRAMQDAL 325 (456)
Q Consensus 293 ~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l 325 (456)
.-...++.+.|++.|-+...+..+..+++++.+
T Consensus 213 ~e~~~~~i~~G~~kinv~T~i~~a~~~a~~~~~ 245 (281)
T PRK06806 213 PEDFKKCIQHGIRKINVATATFNSVITAVNNLV 245 (281)
T ss_pred HHHHHHHHHcCCcEEEEhHHHHHHHHHHHHHHH
Confidence 233466788999999998888886666655554
No 39
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.61 E-value=0.027 Score=57.28 Aligned_cols=217 Identities=15% Similarity=0.160 Sum_probs=145.9
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcE
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPV 153 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPV 153 (456)
.+.|+...+++-.+.+.|+|+.-+++.+ |+.+.+.|...+-+.. ....++.+...++.+++..++||
T Consensus 7 k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~---------~~~~~~~~~~~~~~~a~~~~VPV 77 (286)
T PRK12738 7 KYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTF---------KHIALEEIYALCSAYSTTYNMPL 77 (286)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchh---------hhCCHHHHHHHHHHHHHHCCCCE
Confidence 3456666666667889999999999865 5668888886532211 12456677788888898899999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEEE
Q 012815 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVA 229 (456)
Q Consensus 154 IaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIiA 229 (456)
.+=.|+|. + .+.+++.+++|...|.|... | .|.||-+++-+.+++-++..|. ++=-++
T Consensus 78 alHLDHg~-~----~e~i~~ai~~GFtSVM~DgS-------~------lp~eeNi~~T~evv~~Ah~~gv~VEaElG~ig 139 (286)
T PRK12738 78 ALHLDHHE-S----LDDIRRKVHAGVRSAMIDGS-------H------FPFAENVKLVKSVVDFCHSQDCSVEAELGRLG 139 (286)
T ss_pred EEECCCCC-C----HHHHHHHHHcCCCeEeecCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeC
Confidence 99999995 3 45566677889999999433 2 3678888888888877765331 111122
Q ss_pred ecchh---hc-cc-HHHHHHHHHHhHh-cCCCEEEe-----ccC------CCHHHHHHHHHhCCCCceeeeeeccCCCCC
Q 012815 230 RTDSR---QA-LS-LEESLRRSRAFAD-AGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTP 292 (456)
Q Consensus 230 RTDA~---~~-~~-ldeAI~RakAy~e-AGAD~Ifi-----e~~------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp 292 (456)
..+.. .. .. +. --+.|+.|.+ .|+|++=+ +|. -+.+.+++|.+.++ +|+ +++++...|
T Consensus 140 g~ed~~~~~~~~~~~T-~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~-vPL---VLHGgSG~~ 214 (286)
T PRK12738 140 GVEDDMSVDAESAFLT-DPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPL---VLHGASDVP 214 (286)
T ss_pred CccCCcccccchhcCC-CHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC-CCE---EEeCCCCCC
Confidence 22111 00 00 00 1345666664 69998865 222 24678888888875 775 456543334
Q ss_pred CCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 293 ILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 293 ~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
.-...+.-++|++-|=+..-+..+..+++++.+.
T Consensus 215 ~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~ 248 (286)
T PRK12738 215 DEFVRRTIELGVTKVNVATELKIAFAGAVKAWFA 248 (286)
T ss_pred HHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 2233445679999999999999999999999864
No 40
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=97.60 E-value=0.0025 Score=63.80 Aligned_cols=124 Identities=23% Similarity=0.233 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHh-CccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHH
Q 012815 163 NAMNVKRTVKGYIKA-GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (456)
Q Consensus 163 ~~~nv~rtVk~l~~A-GaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~lde 241 (456)
|.....+.++.+++. |+.||.+ ||+++.-...+.+|-.+-+++++++.. ..+-|++=+-+ .+.+|
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~--------~GstGE~~~Lt~~Er~~~~~~~~~~~~---~~~~viagv~~---~~~~~ 84 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYV--------NGSTGEGFLLSVEERKQIAEIVAEAAK---GKVTLIAHVGS---LNLKE 84 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhC---CCCeEEeccCC---CCHHH
Confidence 556788999999999 9999988 566666667888998888888887754 35666664433 35689
Q ss_pred HHHHHHHhHhcCCCEEEeccC----CCHHHHHH----HHHhCCCCceeeeeeccCCCC-CCCCHHHHHhc
Q 012815 242 SLRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPKMANMLEGGGKT-PILNPLELEEL 302 (456)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~----~s~eei~~----i~~~v~~vP~~~N~~~~~g~t-p~lt~~eL~el 302 (456)
+++.++.+.++|||++++-.+ ++.+++.+ +++..|.+|+++ ...|..+ -.++++.+.++
T Consensus 85 ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~i--Yn~P~~tg~~l~~~~~~~L 152 (288)
T cd00954 85 SQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMII--YHIPALTGVNLTLEQFLEL 152 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEE--EeCccccCCCCCHHHHHHH
Confidence 999999999999999986432 45556554 445563366643 2223221 24666544443
No 41
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.58 E-value=0.026 Score=57.32 Aligned_cols=217 Identities=12% Similarity=0.137 Sum_probs=144.6
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI 154 (456)
+-|....+.+-.+.+.|+|+.-+++.+ |+.+.+.|...+-.. ..| ..++.+...++.+++..++||.
T Consensus 8 ~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~----~~~-----~g~~~~~~~~~~~A~~~~VPV~ 78 (284)
T PRK09195 8 QMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGT----FSY-----AGTEYLLAIVSAAAKQYHHPLA 78 (284)
T ss_pred HHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhH----Hhh-----CCHHHHHHHHHHHHHHCCCCEE
Confidence 455666666666889999999998865 556888888654332 122 3355677888888888999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEEEe
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVAR 230 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIiAR 230 (456)
+=.|.|. + .+.+++.+++|...|.+... | .|.||=+++-+.+++-++..|. ++=-++.
T Consensus 79 lHLDHg~-~----~e~i~~Ai~~GftSVM~DgS-------~------l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg 140 (284)
T PRK09195 79 LHLDHHE-K----FDDIAQKVRSGVRSVMIDGS-------H------LPFAQNISLVKEVVDFCHRFDVSVEAELGRLGG 140 (284)
T ss_pred EECCCCC-C----HHHHHHHHHcCCCEEEeCCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEecccC
Confidence 9999996 3 45567788899999999433 2 4678888888888876654331 1111222
Q ss_pred cchh-hcccHH---HHHHHHHHhHh-cCCCEEEe-----ccC------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCC
Q 012815 231 TDSR-QALSLE---ESLRRSRAFAD-AGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPIL 294 (456)
Q Consensus 231 TDA~-~~~~ld---eAI~RakAy~e-AGAD~Ifi-----e~~------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~l 294 (456)
.+.. ....-+ --.+.|+.|.+ .|+|++-+ +|+ -+.+.+++|.+.++ +|+ +++++..+|.-
T Consensus 141 ~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-vPL---VLHGgSG~~~e 216 (284)
T PRK09195 141 QEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN-IPL---VLHGASGLPTK 216 (284)
T ss_pred cccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCe---EEecCCCCCHH
Confidence 2111 000000 01245666764 79998864 343 25678888988875 675 45654333322
Q ss_pred CHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 295 NPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 295 t~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
...+.-++|++-|=+...+..+..+++++.+.
T Consensus 217 ~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 248 (284)
T PRK09195 217 DIQQTIKLGICKVNVATELKIAFSQALKNYLT 248 (284)
T ss_pred HHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 33445579999999999999999999988764
No 42
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.56 E-value=0.0047 Score=59.20 Aligned_cols=175 Identities=22% Similarity=0.284 Sum_probs=104.4
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
-|+.+++.|++.+++....- ...|.+ ...+.+++|++.+++||+++. |..+ .+.++++.++||+
T Consensus 34 ~a~~~~~~g~d~l~v~dl~~--~~~~~~--------~~~~~i~~i~~~~~~pv~~~G--gI~~----~e~~~~~~~~Gad 97 (234)
T cd04732 34 VAKKWEEAGAKWLHVVDLDG--AKGGEP--------VNLELIEEIVKAVGIPVQVGG--GIRS----LEDIERLLDLGVS 97 (234)
T ss_pred HHHHHHHcCCCEEEEECCCc--cccCCC--------CCHHHHHHHHHhcCCCEEEeC--CcCC----HHHHHHHHHcCCC
Confidence 45667788999999984321 111222 225567778888899999963 2333 3445566679999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh---------hcccHHHHHHHHHHhHh
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR---------QALSLEESLRRSRAFAD 251 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~---------~~~~ldeAI~RakAy~e 251 (456)
.|.|-... +-++ +++.++.. ..+.+-++.+ .|.. ....-.+.++.++.|.+
T Consensus 98 ~vvigs~~------------l~dp-~~~~~i~~------~~g~~~i~~s-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (234)
T cd04732 98 RVIIGTAA------------VKNP-ELVKELLK------EYGGERIVVG-LDAKDGKVATKGWLETSEVSLEELAKRFEE 157 (234)
T ss_pred EEEECchH------------HhCh-HHHHHHHH------HcCCceEEEE-EEeeCCEEEECCCeeecCCCHHHHHHHHHH
Confidence 99875542 1122 23333322 1222112211 1110 00011245788999999
Q ss_pred cCCCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 252 AGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 252 AGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
+||+.+.+..+ ++.+.++++++.++ +|+.+| +|-...=...++.+.|+.-|..+..++..
T Consensus 158 ~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~-ipvi~~----GGi~~~~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 158 LGVKAIIYTDISRDGTLSGPNFELYKELAAATG-IPVIAS----GGVSSLDDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred cCCCEEEEEeecCCCccCCCCHHHHHHHHHhcC-CCEEEe----cCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 99999988765 24578889988876 787654 33221112567777999999998876543
No 43
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.52 E-value=0.0026 Score=61.04 Aligned_cols=183 Identities=22% Similarity=0.293 Sum_probs=104.6
Q ss_pred CChHH-HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012815 97 FDALS-AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (456)
Q Consensus 97 yDalS-Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~ 175 (456)
.|+.. |+..++.|++.+++.... ....|.+ ..++.++.|++.+++||+++ .|..+.+++ +++.
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld--~~~~g~~--------~~~~~i~~i~~~~~~pv~~~--GGI~~~ed~----~~~~ 93 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLD--GAKAGKP--------VNLELIEAIVKAVDIPVQVG--GGIRSLETV----EALL 93 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCC--ccccCCc--------ccHHHHHHHHHHCCCCEEEc--CCcCCHHHH----HHHH
Confidence 35554 777888999999998642 1112332 23566778888889999994 444454444 5666
Q ss_pred HhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCe---EEEEecchhhcccHHHHHHHHHHhHhc
Q 012815 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI---VIVARTDSRQALSLEESLRRSRAFADA 252 (456)
Q Consensus 176 ~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~df---vIiARTDA~~~~~ldeAI~RakAy~eA 252 (456)
++||++|.+--.. .+..+.+.++......+-...-|+ .+ .+.......-.+.++.++.+.++
T Consensus 94 ~~Ga~~vilg~~~-------------l~~~~~l~ei~~~~~~~i~vsid~k~~~v--~~~g~~~~~~~~~~e~~~~~~~~ 158 (233)
T PRK00748 94 DAGVSRVIIGTAA-------------VKNPELVKEACKKFPGKIVVGLDARDGKV--ATDGWLETSGVTAEDLAKRFEDA 158 (233)
T ss_pred HcCCCEEEECchH-------------HhCHHHHHHHHHHhCCCceeeeeccCCEE--EEccCeecCCCCHHHHHHHHHhc
Confidence 7899999763221 111123333222110000000111 01 01110000012346778889999
Q ss_pred CCCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcC-CCEEeccchHHH
Q 012815 253 GADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLVAYPLSLIG 315 (456)
Q Consensus 253 GAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elG-v~~Vs~p~~ll~ 315 (456)
||+.|++... .+.+.++++++.++ +|+.+| +|-...-..+++.+.| +.-|+.+..++.
T Consensus 159 g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~-ipvia~----GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 159 GVKAIIYTDISRDGTLSGPNVEATRELAAAVP-IPVIAS----GGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred CCCEEEEeeecCcCCcCCCCHHHHHHHHHhCC-CCEEEe----CCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 9998888754 34678899998876 777654 3432222356678888 999998876553
No 44
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.52 E-value=0.051 Score=55.36 Aligned_cols=216 Identities=16% Similarity=0.203 Sum_probs=138.9
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc--CCc
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIP 152 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~--~iP 152 (456)
+-|....+.+-.+.+.|+|+.-+++.+ |+.+.+.|.-.+-+.. ..+| .++.+...++.+++.. ++|
T Consensus 8 ~~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~-~~~~-------~~~~~~~~~~~~a~~~~~~vP 79 (293)
T PRK07315 8 KFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAA-KYMG-------GYKVCKNLIENLVESMGITVP 79 (293)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHH-hhcC-------cHHHHHHHHHHHHHHcCCCCc
Confidence 345555555556889999999998654 6668898886643321 1112 2455667777777777 789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCe-----EE
Q 012815 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-----VI 227 (456)
Q Consensus 153 VIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~df-----vI 227 (456)
|.+=.|+| + .+.+++.+++|+..|.+-.. | .|.+|.++.-+.+++-++..|..+ .|
T Consensus 80 V~lHLDH~--~----~~~i~~ai~~GftSVm~d~S-------~------l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i 140 (293)
T PRK07315 80 VAIHLDHG--H----YEDALECIEVGYTSIMFDGS-------H------LPVEENLKLAKEVVEKAHAKGISVEAEVGTI 140 (293)
T ss_pred EEEECCCC--C----HHHHHHHHHcCCCEEEEcCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEecCcc
Confidence 99999998 5 33556777899999999554 2 366787777777776555432111 00
Q ss_pred EEecchh---hc-ccHHHHHHHHHHhHhcCCCEEEec--cC----------CCHHHHHHHHHhCCCCceeeeeeccCCCC
Q 012815 228 VARTDSR---QA-LSLEESLRRSRAFADAGADVLFID--AL----------ASKEEMKAFCEISPLVPKMANMLEGGGKT 291 (456)
Q Consensus 228 iARTDA~---~~-~~ldeAI~RakAy~eAGAD~Ifie--~~----------~s~eei~~i~~~v~~vP~~~N~~~~~g~t 291 (456)
.+.-|.. .. ... +.|+.+.+.|+|+|=+- .+ -+.+.++++.+.++.+|+. +.++...
T Consensus 141 ~g~ed~~~g~s~~t~p----eea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlV---lhGGSGi 213 (293)
T PRK07315 141 GGEEDGIIGKGELAPI----EDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIV---LHGGSGI 213 (293)
T ss_pred cCcCccccCccCCCCH----HHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEE---EECCCCC
Confidence 1111110 01 233 44566668999998654 11 2467889998887446753 3442223
Q ss_pred CCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHH
Q 012815 292 PILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI 328 (456)
Q Consensus 292 p~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i 328 (456)
|.-...++-+.|++-|-+...+..+...++++.+..+
T Consensus 214 ~~e~~~~~i~~Gi~KiNv~T~i~~~~~~~~~~~~~~~ 250 (293)
T PRK07315 214 PDDQIQEAIKLGVAKVNVNTECQIAFANATRKFARDY 250 (293)
T ss_pred CHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHHHhc
Confidence 3233456678999999999998887777777776554
No 45
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.52 E-value=0.037 Score=55.99 Aligned_cols=216 Identities=19% Similarity=0.218 Sum_probs=142.1
Q ss_pred HHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEE
Q 012815 80 SLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (456)
Q Consensus 80 ~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIa 155 (456)
-|....+.+-.+.+.|+||.-+++.+ |+.+.+.|.--+-... . ..+++.+...++..++..++||.+
T Consensus 4 lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~----~-----~~~~~~~~~~~~~~a~~~~VPV~l 74 (276)
T cd00947 4 LLKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAI----K-----YAGLELLVAMVKAAAERASVPVAL 74 (276)
T ss_pred HHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchh----h-----hCCHHHHHHHHHHHHHHCCCCEEE
Confidence 34455555556889999999999865 5568888886543321 1 233777888888888888999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEEEec
Q 012815 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVART 231 (456)
Q Consensus 156 D~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIiART 231 (456)
=.|.|. +. +.+++.+++|...|.|... | .|.+|-+++-+.+++-++..|. ++=-++-.
T Consensus 75 HLDH~~-~~----~~i~~ai~~GftSVMiD~S-------~------l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~ 136 (276)
T cd00947 75 HLDHGS-SF----ELIKRAIRAGFSSVMIDGS-------H------LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGE 136 (276)
T ss_pred ECCCCC-CH----HHHHHHHHhCCCEEEeCCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCc
Confidence 999994 43 4445667899999999433 2 4778888888887776665431 01111111
Q ss_pred c-hhhc-ccHHHHHHHHHHhHh-cCCCEEEe-----ccC-------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCH
Q 012815 232 D-SRQA-LSLEESLRRSRAFAD-AGADVLFI-----DAL-------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNP 296 (456)
Q Consensus 232 D-A~~~-~~ldeAI~RakAy~e-AGAD~Ifi-----e~~-------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~ 296 (456)
+ .... ..+---.+.++.|.+ .|+|++-+ +|. -+.+.++++.+.++ +|+ +++++..+|.-..
T Consensus 137 e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~-vPL---VlHGgSG~~~e~~ 212 (276)
T cd00947 137 EDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN-VPL---VLHGGSGIPDEQI 212 (276)
T ss_pred cCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhC-CCE---EEeCCCCCCHHHH
Confidence 1 1000 000001355777775 59999874 332 24578889988876 676 3555333332223
Q ss_pred HHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 297 LELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 297 ~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
.+.-+.|++-|=+...+..+.+.++++.+.
T Consensus 213 ~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 242 (276)
T cd00947 213 RKAIKLGVCKININTDLRLAFTAALREYLA 242 (276)
T ss_pred HHHHHcCCeEEEeChHHHHHHHHHHHHHHH
Confidence 445579999999999999999999998864
No 46
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=97.51 E-value=0.0035 Score=63.25 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
|.....+.++.+++.|++|+.+ ||+++.-...+.+|..+-++.++++.. ..+-|++=+-+ .+.+|+
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v--------~GstGE~~~Ls~~Er~~l~~~~~~~~~---g~~pvi~gv~~---~~t~~a 84 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISV--------GGTSGEPGSLTLEERKQAIENAIDQIA---GRIPFAPGTGA---LNHDET 84 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CccCcccccCCHHHHHHHHHHHHHHhC---CCCcEEEECCc---chHHHH
Confidence 5577899999999999999998 455565667899999888888887654 34555655433 357899
Q ss_pred HHHHHHhHhcCCCEEEeccC----CCHHHHHH----HHHhCCCCceeeeeeccCCCC-CCCCHHHHHhc
Q 012815 243 LRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPKMANMLEGGGKT-PILNPLELEEL 302 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~----i~~~v~~vP~~~N~~~~~g~t-p~lt~~eL~el 302 (456)
|+.++.++++|||++++-.+ ++.+++.+ ++++.|.+|+++- ..|+.+ -.++++.+.++
T Consensus 85 i~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iY--n~P~~tg~~l~~~~l~~L 151 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIY--NIPGRAAQEIAPKTMARL 151 (294)
T ss_pred HHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEE--eCchhcCcCCCHHHHHHH
Confidence 99999999999999988653 34455444 4555634665432 223222 24666554443
No 47
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.51 E-value=0.042 Score=55.85 Aligned_cols=217 Identities=16% Similarity=0.200 Sum_probs=143.0
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI 154 (456)
+.|....+.+-.+.+.|+||.-+++.+ |+.+.+.|...+-... .. ..++.+...++..++..++||.
T Consensus 8 ~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~-~~--------~g~~~~~~~~~~~A~~~~VPVa 78 (284)
T PRK12857 8 ELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAI-KY--------AGIEYISAMVRTAAEKASVPVA 78 (284)
T ss_pred HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHh-hh--------CCHHHHHHHHHHHHHHCCCCEE
Confidence 445555555656889999999999654 5668888876643321 11 2355667778888888899999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEEEe
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVAR 230 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIiAR 230 (456)
+=.|.|. + .+.+++.+++|...|.|... | .|.||=+++-+.+++-++..|. ++=-++.
T Consensus 79 lHLDH~~-~----~e~i~~ai~~GftSVM~DgS-------~------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg 140 (284)
T PRK12857 79 LHLDHGT-D----FEQVMKCIRNGFTSVMIDGS-------K------LPLEENIALTKKVVEIAHAVGVSVEAELGKIGG 140 (284)
T ss_pred EECCCCC-C----HHHHHHHHHcCCCeEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCC
Confidence 9999995 4 34566777789999999433 2 3778888888888877654331 1111222
Q ss_pred cchh-h---cccHHHHHHHHHHhH-hcCCCEEEe-----ccC------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCC
Q 012815 231 TDSR-Q---ALSLEESLRRSRAFA-DAGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPIL 294 (456)
Q Consensus 231 TDA~-~---~~~ldeAI~RakAy~-eAGAD~Ifi-----e~~------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~l 294 (456)
.+.. . ...+---.+.|+.|. +.|+|++=+ +|. -+.+.++++.+.++ +|+ +++++..+|.-
T Consensus 141 ~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~-vPL---VlHGgSG~~~e 216 (284)
T PRK12857 141 TEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN-IPI---VLHGSSGVPDE 216 (284)
T ss_pred ccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCE---EEeCCCCCCHH
Confidence 2111 0 000000135566675 569999864 332 24678888988875 675 45654333322
Q ss_pred CHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 295 NPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 295 t~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
...+.-++|++-|=+...+..+.++++++.+.
T Consensus 217 ~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~ 248 (284)
T PRK12857 217 AIRKAISLGVRKVNIDTNIREAFVARLREVLE 248 (284)
T ss_pred HHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 33445579999999999999999999988864
No 48
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.51 E-value=0.029 Score=56.08 Aligned_cols=204 Identities=17% Similarity=0.162 Sum_probs=119.5
Q ss_pred ceeecccCCh--HHHHHHHHhC-CcEEEecchHHhhhhcccCCC---------------CCCCHHHHHHHHHHHHhccCC
Q 012815 90 VHQGPACFDA--LSAKLVEKSG-FSFCFTSGFSISAARLALPDT---------------GFISYGEMVDQGQLITQAVSI 151 (456)
Q Consensus 90 ~lv~pgayDa--lSArl~e~aG-fdAI~vSG~avSas~lG~PD~---------------~~lt~~Eml~~~r~I~ra~~i 151 (456)
|+.+....|. -.-+.+.+.| |.++.+.+...- ...|.|.- .....+++++..+...+..+.
T Consensus 12 P~~~aag~~~~~~~~~~~~~~g~~g~v~~~ti~~~-~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~ 90 (296)
T cd04740 12 PVILASGTFGFGEELSRVADLGKLGAIVTKSITLE-PREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFGT 90 (296)
T ss_pred CCEECCCCCCCHHHHHHHHhcCCceEEEECCcCCC-CCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCCC
Confidence 4544444432 2223333455 888887765433 22344431 113356777777776555678
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCC--Cccc-cCHHHHHHHHHHHHHHhHhhCCCeEEE
Q 012815 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTR--GRKV-VSREEAVMRIKAAVDARKESGSDIVIV 228 (456)
Q Consensus 152 PVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~--gk~l-vp~ee~v~kI~AA~~Ar~~~G~dfvIi 228 (456)
|+++-.= | .+.+...+.++++.++|+++|-|-=. |.|.. |..+ -+++...+-+++++++. ++-|.
T Consensus 91 p~ivsi~-g-~~~~~~~~~a~~~~~~G~d~iElN~~-----cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-----~~Pv~ 158 (296)
T cd04740 91 PVIASIA-G-STVEEFVEVAEKLADAGADAIELNIS-----CPNVKGGGMAFGTDPEAVAEIVKAVKKAT-----DVPVI 158 (296)
T ss_pred cEEEEEe-c-CCHHHHHHHHHHHHHcCCCEEEEECC-----CCCCCCCcccccCCHHHHHHHHHHHHhcc-----CCCEE
Confidence 9998762 2 14677888999999999999988533 33322 2222 34454545555554442 34455
Q ss_pred EecchhhcccHHHHHHHHHHhHhcCCCEEEecc--------C---------------------CCHHHHHHHHHhCCCCc
Q 012815 229 ARTDSRQALSLEESLRRSRAFADAGADVLFIDA--------L---------------------ASKEEMKAFCEISPLVP 279 (456)
Q Consensus 229 ARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~--------~---------------------~s~eei~~i~~~v~~vP 279 (456)
.|.-. ..++..+-+++..++|||.|.+.. . ...+.++++.+.++ +|
T Consensus 159 vKl~~----~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~-ip 233 (296)
T cd04740 159 VKLTP----NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE-IP 233 (296)
T ss_pred EEeCC----CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC-CC
Confidence 55321 235677778889999999876521 0 01256667777665 77
Q ss_pred eeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 280 KMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 280 ~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
+..| +|-+..-+..++-++|...|..+..++.
T Consensus 234 ii~~----GGI~~~~da~~~l~~GAd~V~igra~l~ 265 (296)
T cd04740 234 IIGV----GGIASGEDALEFLMAGASAVQVGTANFV 265 (296)
T ss_pred EEEE----CCCCCHHHHHHHHHcCCCEEEEchhhhc
Confidence 6654 3432223456666799999998877665
No 49
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=97.50 E-value=0.032 Score=56.72 Aligned_cols=214 Identities=17% Similarity=0.177 Sum_probs=140.7
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC--Cc
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS--IP 152 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~--iP 152 (456)
+-|....+.+-.+.+.|+||.-+++.+ |+.+.+.|...+-... .+.. +++.+...++.+++..+ +|
T Consensus 8 ~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~----~~~~----~~~~~~~~~~~~A~~~~~~vP 79 (286)
T PRK08610 8 EMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAA----RYMS----GFYTVVKMVEGLMHDLNITIP 79 (286)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHH----hhcC----cHHHHHHHHHHHHHHcCCCCC
Confidence 345555555656889999999999654 6668898886643321 1211 24456777777777665 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEE
Q 012815 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (456)
Q Consensus 153 VIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIi 228 (456)
|.+=.|.|. + .+.+++.+++|...|.|... | .|.||-+++-+.+++-++..|. ++=-+
T Consensus 80 V~lHLDHg~-~----~e~i~~ai~~GftSVM~DgS-------~------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 141 (286)
T PRK08610 80 VAIHLDHGS-S----FEKCKEAIDAGFTSVMIDAS-------H------SPFEENVATTKKVVEYAHEKGVSVEAELGTV 141 (286)
T ss_pred EEEECCCCC-C----HHHHHHHHHcCCCEEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 999999996 4 44446678899999999443 3 4678888888888876654331 11112
Q ss_pred Eecchh--h----cccHHHHHHHHHHhH-hcCCCEEEe-----ccCC------CHHHHHHHHHhCCCCceeeeeeccCCC
Q 012815 229 ARTDSR--Q----ALSLEESLRRSRAFA-DAGADVLFI-----DALA------SKEEMKAFCEISPLVPKMANMLEGGGK 290 (456)
Q Consensus 229 ARTDA~--~----~~~ldeAI~RakAy~-eAGAD~Ifi-----e~~~------s~eei~~i~~~v~~vP~~~N~~~~~g~ 290 (456)
+..+.. . -... +.|+.|. +-|+|++=+ +|.. +.+.++++.+.++ +|+ +++++..
T Consensus 142 gg~ed~~~~~~~~yT~p----eea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vPL---VLHGgSG 213 (286)
T PRK08610 142 GGQEDDVVADGIIYADP----KECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTG-LPL---VLHGGTG 213 (286)
T ss_pred CCccCCCCCcccccCCH----HHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHC-CCE---EEeCCCC
Confidence 222111 0 0123 4456666 469998864 3332 5678888888875 675 4565433
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 291 TPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 291 tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
+|.-...++-+.|++-|=+...+..+..+++++.+.
T Consensus 214 ~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~ 249 (286)
T PRK08610 214 IPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLN 249 (286)
T ss_pred CCHHHHHHHHHCCCeEEEeccHHHHHHHHHHHHHHH
Confidence 332234455679999999999999999999998864
No 50
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.49 E-value=0.038 Score=56.16 Aligned_cols=213 Identities=15% Similarity=0.162 Sum_probs=142.7
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI 154 (456)
+-|....+.+-.+-+.|+||.-+++.+ |+.+.+.|...+-... . ...++.+...++.+++..++||.
T Consensus 8 ~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~----~-----~~g~~~~~~~~~~~a~~~~VPVa 78 (284)
T PRK12737 8 NMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTF----S-----YAGTDYIVAIAEVAARKYNIPLA 78 (284)
T ss_pred HHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHH----h-----hCCHHHHHHHHHHHHHHCCCCEE
Confidence 345555555556889999999998865 5568888886543221 1 12345567778888888899999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEEEe
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVAR 230 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIiAR 230 (456)
+=.|.|. + .+.+++.+++|...|.| |.. | .|.+|-+++-+.+++-++..|. ++=-++.
T Consensus 79 lHLDH~~-~----~e~i~~ai~~GftSVMi-DgS------~------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg 140 (284)
T PRK12737 79 LHLDHHE-D----LDDIKKKVRAGIRSVMI-DGS------H------LSFEENIAIVKEVVEFCHRYDASVEAELGRLGG 140 (284)
T ss_pred EECCCCC-C----HHHHHHHHHcCCCeEEe-cCC------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC
Confidence 9999995 3 45667888899999999 432 3 3788888888888887765431 1111222
Q ss_pred cchhh--------cccHHHHHHHHHHhH-hcCCCEEEe-----ccC----C--CHHHHHHHHHhCCCCceeeeeeccCCC
Q 012815 231 TDSRQ--------ALSLEESLRRSRAFA-DAGADVLFI-----DAL----A--SKEEMKAFCEISPLVPKMANMLEGGGK 290 (456)
Q Consensus 231 TDA~~--------~~~ldeAI~RakAy~-eAGAD~Ifi-----e~~----~--s~eei~~i~~~v~~vP~~~N~~~~~g~ 290 (456)
++... -... +.|+.|. +.|+|++-+ +|. + +.+.++++.+.++ +|+ +++++..
T Consensus 141 ~e~~~~~~~~~~~~T~p----eeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-iPL---VlHGgSG 212 (284)
T PRK12737 141 QEDDLVVDEKDAMYTNP----DAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS-IPL---VLHGASG 212 (284)
T ss_pred ccCCcccccccccCCCH----HHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCE---EEeCCCC
Confidence 22110 0122 4455666 489998864 343 2 5678889988776 675 4565433
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 291 TPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 291 tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
+|.-...+.-++|++-|-+...+..+.++++++.+.
T Consensus 213 ~~~e~~~kai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 248 (284)
T PRK12737 213 VPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFY 248 (284)
T ss_pred CCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 332233445579999999999999999999988864
No 51
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.48 E-value=0.017 Score=52.76 Aligned_cols=173 Identities=21% Similarity=0.172 Sum_probs=103.5
Q ss_pred HHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCC--CCCHHHHHHHHHHHHHhCccE
Q 012815 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG--YGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 104 l~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtG--YG~~~nv~rtVk~l~~AGaaG 181 (456)
.+.+.|++++.+.| +++..+........+||++=...+ +.......+.++.++++||++
T Consensus 21 ~~~~~gv~gi~~~g-------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~ 81 (201)
T cd00945 21 EAIEYGFAAVCVNP-------------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADE 81 (201)
T ss_pred HHHHhCCcEEEECH-------------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 34457899988886 555555444433258888644443 323678999999999999999
Q ss_pred EEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEecc
Q 012815 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (456)
Q Consensus 182 I~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~ 261 (456)
+.+.--.+ +... + ..++..+.++++.++. ..+-.+++--+.... ...++..+.++...++|+|+|=...
T Consensus 82 i~v~~~~~---~~~~-~----~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~--~~~~~~~~~~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 82 IDVVINIG---SLKE-G----DWEEVLEEIAAVVEAA-DGGLPLKVILETRGL--KTADEIAKAARIAAEAGADFIKTST 150 (201)
T ss_pred EEEeccHH---HHhC-C----CHHHHHHHHHHHHHHh-cCCceEEEEEECCCC--CCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 99954321 1000 0 2467777777777664 212344444432221 2456666667777889999996544
Q ss_pred C-----CCHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCHHHHHhcCCCEEecc
Q 012815 262 L-----ASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (456)
Q Consensus 262 ~-----~s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p 310 (456)
- .+.+.++++.+.++ .+|+. .. +|....-...+...+|...++++
T Consensus 151 ~~~~~~~~~~~~~~i~~~~~~~~~v~--~~--gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 151 GFGGGGATVEDVKLMKEAVGGRVGVK--AA--GGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCCCCCCCHHHHHHHHHhcccCCcEE--EE--CCCCCHHHHHHHHHhccceeecC
Confidence 2 26788888888764 23332 22 23210023466667788777653
No 52
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.48 E-value=0.045 Score=55.54 Aligned_cols=213 Identities=14% Similarity=0.132 Sum_probs=144.7
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI 154 (456)
+-|....+.+-.+.+.|+||.-+++.+ |+.+.+.|..-+-+. ..| ..++.+...++.+++..++||.
T Consensus 6 ~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~----~~~-----~~~~~~~~~~~~~a~~~~VPVa 76 (282)
T TIGR01858 6 YMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGT----FKH-----AGTEYIVALCSAASTTYNMPLA 76 (282)
T ss_pred HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccH----Hhh-----CCHHHHHHHHHHHHHHCCCCEE
Confidence 345555566666889999999998865 566888887654332 122 3466677888889988999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEEEe
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVAR 230 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIiAR 230 (456)
+=.|.|. + .+.+++.+++|...|.+... | .|.||-++.-+.+++-++..|. ++=-++.
T Consensus 77 lHLDHg~-~----~e~i~~ai~~GFtSVM~DgS-------~------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg 138 (282)
T TIGR01858 77 LHLDHHE-S----LDDIRQKVHAGVRSAMIDGS-------H------FPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGG 138 (282)
T ss_pred EECCCCC-C----HHHHHHHHHcCCCEEeecCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCC
Confidence 9999995 4 45567888899999999443 2 3678888888888877664431 1111222
Q ss_pred cchh-h-------cccHHHHHHHHHHhH-hcCCCEEEe-----ccC------CCHHHHHHHHHhCCCCceeeeeeccCCC
Q 012815 231 TDSR-Q-------ALSLEESLRRSRAFA-DAGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGK 290 (456)
Q Consensus 231 TDA~-~-------~~~ldeAI~RakAy~-eAGAD~Ifi-----e~~------~s~eei~~i~~~v~~vP~~~N~~~~~g~ 290 (456)
++.. . -.+. +.|+.|. +.|+|++=+ +|. -+.+.+++|.+.++ +|+ +++++..
T Consensus 139 ~e~~~~~~~~~~~~T~p----eea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~-iPL---VlHGgSG 210 (282)
T TIGR01858 139 VEDDLSVDEEDALYTDP----QEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVD-VPL---VLHGASD 210 (282)
T ss_pred ccCCCccccchhccCCH----HHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhC-CCe---EEecCCC
Confidence 2211 0 0123 3455555 589998864 342 25678889988876 675 4555333
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 291 TPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 291 tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
.|.-.....-++|++-|=+...+..+.++++++.+.
T Consensus 211 ~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 246 (282)
T TIGR01858 211 VPDEDVRRTIELGICKVNVATELKIAFSGAVKAYFA 246 (282)
T ss_pred CCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 332223445579999999999999999999998864
No 53
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.47 E-value=0.0047 Score=62.73 Aligned_cols=199 Identities=17% Similarity=0.142 Sum_probs=117.9
Q ss_pred ecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHh--ccCCcEEEeCCCCCC-CHHHHHH
Q 012815 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ--AVSIPVIGDGDNGYG-NAMNVKR 169 (456)
Q Consensus 93 ~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~r--a~~iPVIaD~DtGYG-~~~nv~r 169 (456)
|.++-|..--+++.+.|.+.+|+-- - ++..+-+.. . ..+.... ....|+++-+ +| +++...+
T Consensus 15 m~~~t~~~fR~l~~~~g~~~~~tem-i-~~~~l~~~~------~----~~~~~~~~~~~~~p~i~ql---~g~~~~~~~~ 79 (319)
T TIGR00737 15 MAGVTDSPFRRLVAEYGAGLTVCEM-V-SSEAIVYDS------Q----RTMRLLDIAEDETPISVQL---FGSDPDTMAE 79 (319)
T ss_pred CCCCCcHHHHHHHHHHCCCEEEECC-E-EEhhhhcCC------H----HHHHHhhcCCccceEEEEE---eCCCHHHHHH
Confidence 5689999999999999988777541 1 111111111 0 1111111 2258888765 34 5788999
Q ss_pred HHHHHHHhCccEEEeCCCC-CCCCccCCCCcccc-CHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHH
Q 012815 170 TVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSR 247 (456)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~lv-p~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~Rak 247 (456)
+++.+.++|++||.|--.. .+|++.+-+|..+. .++.+.+-+++++++. ++-|..++-.-....-.+.++-++
T Consensus 80 aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-----~~pv~vKir~g~~~~~~~~~~~a~ 154 (319)
T TIGR00737 80 AAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-----DIPVTVKIRIGWDDAHINAVEAAR 154 (319)
T ss_pred HHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-----CCCEEEEEEcccCCCcchHHHHHH
Confidence 9999999999999996553 23444333444443 3343434444443332 244444432111111134577788
Q ss_pred HhHhcCCCEEEeccC---------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHH-HhcCCCEEeccchHHHH
Q 012815 248 AFADAGADVLFIDAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLEL-EELGFKLVAYPLSLIGV 316 (456)
Q Consensus 248 Ay~eAGAD~Ifie~~---------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL-~elGv~~Vs~p~~ll~a 316 (456)
.+.++|+|.|.+++. .+.+.++++.+.++ +|+..| |+-...-...++ +..|+..|.++-.++.-
T Consensus 155 ~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-ipvi~n----GgI~~~~da~~~l~~~gad~VmigR~~l~~ 228 (319)
T TIGR00737 155 IAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR-IPVIGN----GDIFSPEDAKAMLETTGCDGVMIGRGALGN 228 (319)
T ss_pred HHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC-CcEEEe----CCCCCHHHHHHHHHhhCCCEEEEChhhhhC
Confidence 899999999998753 23566777878777 788766 332211223444 46789999998776644
No 54
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.45 E-value=0.0057 Score=58.78 Aligned_cols=174 Identities=20% Similarity=0.248 Sum_probs=99.8
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
|+..++.|++.+++--.. +...|.+. ..+.++.+++.+++|+.++. |.-+. +.++.+.++||+.
T Consensus 34 a~~~~~~g~~~l~v~dl~--~~~~g~~~--------~~~~i~~i~~~~~~pi~~gg--GI~~~----ed~~~~~~~Ga~~ 97 (230)
T TIGR00007 34 AKKWEEEGAERIHVVDLD--GAKEGGPV--------NLPVIKKIVRETGVPVQVGG--GIRSL----EDVEKLLDLGVDR 97 (230)
T ss_pred HHHHHHcCCCEEEEEeCC--ccccCCCC--------cHHHHHHHHHhcCCCEEEeC--CcCCH----HHHHHHHHcCCCE
Confidence 566788899999984221 11113221 13456777777889999964 54454 3445677799999
Q ss_pred EEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE---Eec-----chhhcccHHHHHHHHHHhHhcC
Q 012815 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV---ART-----DSRQALSLEESLRRSRAFADAG 253 (456)
Q Consensus 182 I~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi---ART-----DA~~~~~ldeAI~RakAy~eAG 253 (456)
|.+=.-. +-+++. ++.+.+. .|.+-++. .|- +......-...++.++.|.+.|
T Consensus 98 vvlgs~~------------l~d~~~----~~~~~~~---~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g 158 (230)
T TIGR00007 98 VIIGTAA------------VENPDL----VKELLKE---YGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG 158 (230)
T ss_pred EEEChHH------------hhCHHH----HHHHHHH---hCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC
Confidence 9773332 112222 2222222 23222221 121 1100000013467889999999
Q ss_pred CCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 254 ADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 254 AD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
|+.+.+..+ ++.+.++++++..+ +|+.++ +|-...-..+++.+.|+..|+.+..++.
T Consensus 159 ~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~-ipvia~----GGi~~~~di~~~~~~Gadgv~ig~a~~~ 223 (230)
T TIGR00007 159 LEGIIYTDISRDGTLSGPNFELTKELVKAVN-VPVIAS----GGVSSIDDLIALKKLGVYGVIVGKALYE 223 (230)
T ss_pred CCEEEEEeecCCCCcCCCCHHHHHHHHHhCC-CCEEEe----CCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 998776643 34578888888765 676654 3432222346677899999999887654
No 55
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.45 E-value=0.0044 Score=63.58 Aligned_cols=199 Identities=14% Similarity=0.044 Sum_probs=121.3
Q ss_pred ecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHh-ccCCcEEEeCCCCCC-CHHHHHHH
Q 012815 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ-AVSIPVIGDGDNGYG-NAMNVKRT 170 (456)
Q Consensus 93 ~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~r-a~~iPVIaD~DtGYG-~~~nv~rt 170 (456)
|-|.=|..-=+++.+.|...++.|-+-.+. ++.-.. ..++ +.. -...|+++-+ +| +++...++
T Consensus 8 M~g~Td~~fR~l~~~~g~~~~~~TEMv~a~---~l~~~~---~~~~------l~~~~~e~p~~vQl---~g~~p~~~~~a 72 (318)
T TIGR00742 8 MLDWTDRHFRYFLRLLSKHTLLYTEMITAK---AIIHGD---KKDI------LKFSPEESPVALQL---GGSDPNDLAKC 72 (318)
T ss_pred CCCCcCHHHHHHHHHhCCCCEEEeCCEEEh---hhhccC---HHHH------cccCCCCCcEEEEE---ccCCHHHHHHH
Confidence 347777777777878887434334222211 111100 0011 111 1247888764 34 57889999
Q ss_pred HHHHHHhCccEEEeCCCC-CCCCccCCCCcccc-CHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012815 171 VKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (456)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~lv-p~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakA 248 (456)
++.+.+.|+++|.|-=+. .+|.+....|-.|. .++...+-+++++++. +..+-+--|.--......+++++-++.
T Consensus 73 A~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~---~~PVsvKiR~g~~~~~~~~~~~~~~~~ 149 (318)
T TIGR00742 73 AKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV---NIPVTVKHRIGIDPLDSYEFLCDFVEI 149 (318)
T ss_pred HHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh---CCCeEEEEecCCCCcchHHHHHHHHHH
Confidence 999999999999998775 23333222233343 4454555555555443 345666666522222345788899999
Q ss_pred hHhcCCCEEEeccCC-----------------CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhc--CCCEEec
Q 012815 249 FADAGADVLFIDALA-----------------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL--GFKLVAY 309 (456)
Q Consensus 249 y~eAGAD~Ifie~~~-----------------s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~el--Gv~~Vs~ 309 (456)
+.++|||+|-|++-+ +-+.+.++.+.++.+|+..| |+ ..+.++..++ |+..|..
T Consensus 150 l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~N----Gd---I~s~~da~~~l~g~dgVMi 222 (318)
T TIGR00742 150 VSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEIN----GG---IKNSEQIKQHLSHVDGVMV 222 (318)
T ss_pred HHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEE----CC---cCCHHHHHHHHhCCCEEEE
Confidence 999999999999853 23567778887855888877 33 3466555544 8998888
Q ss_pred cchHHHH
Q 012815 310 PLSLIGV 316 (456)
Q Consensus 310 p~~ll~a 316 (456)
+-.++.-
T Consensus 223 gRgal~n 229 (318)
T TIGR00742 223 GREAYEN 229 (318)
T ss_pred CHHHHhC
Confidence 7766654
No 56
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.45 E-value=0.0057 Score=59.15 Aligned_cols=175 Identities=21% Similarity=0.245 Sum_probs=102.8
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
.|+.+.+.|++.+++--..-+ ..+++ +....++.+++.+++|++++ .|.-+. +.++.+.++||+
T Consensus 37 ~a~~~~~~G~~~l~i~dl~~~--~~~~~--------~~~~~i~~i~~~~~~~l~v~--GGi~~~----~~~~~~~~~Ga~ 100 (241)
T PRK13585 37 VAKRWVDAGAETLHLVDLDGA--FEGER--------KNAEAIEKIIEAVGVPVQLG--GGIRSA----EDAASLLDLGVD 100 (241)
T ss_pred HHHHHHHcCCCEEEEEechhh--hcCCc--------ccHHHHHHHHHHcCCcEEEc--CCcCCH----HHHHHHHHcCCC
Confidence 455566789998887643321 12222 23456778888889999994 233333 444667789999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh----hcccH-----HHHHHHHHHhHh
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR----QALSL-----EESLRRSRAFAD 251 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~----~~~~l-----deAI~RakAy~e 251 (456)
+|+|--.. +-.+ +.+.++ ++. .|.+-++++- |.. ...+. .+.++.++.+.+
T Consensus 101 ~v~iGs~~------------~~~~-~~~~~i---~~~---~g~~~i~~si-d~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 160 (241)
T PRK13585 101 RVILGTAA------------VENP-EIVREL---SEE---FGSERVMVSL-DAKDGEVVIKGWTEKTGYTPVEAAKRFEE 160 (241)
T ss_pred EEEEChHH------------hhCh-HHHHHH---HHH---hCCCcEEEEE-EeeCCEEEECCCcccCCCCHHHHHHHHHH
Confidence 99993321 1111 222332 221 2222222211 100 00010 144677888899
Q ss_pred cCCCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 252 AGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 252 AGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
+|++.|++... .+.+.++++++.++ +|+.++ ||-...-...++.+.|+..|+.+..++..
T Consensus 161 ~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~-iPvia~----GGI~~~~di~~~~~~Ga~gv~vgsa~~~~ 228 (241)
T PRK13585 161 LGAGSILFTNVDVEGLLEGVNTEPVKELVDSVD-IPVIAS----GGVTTLDDLRALKEAGAAGVVVGSALYKG 228 (241)
T ss_pred cCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCC-CCEEEe----CCCCCHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 99999998654 23467889998876 776654 34322123566789999999998876654
No 57
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.39 E-value=0.052 Score=55.20 Aligned_cols=218 Identities=17% Similarity=0.191 Sum_probs=143.1
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc--CCc
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIP 152 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~--~iP 152 (456)
+-|....+.+--+.+.|+||.-+++.+ |+.+.+.|...+-+.. .+ +..++.+...++..++.. ++|
T Consensus 8 ~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~----~~----~~g~~~~~~~~~~~a~~~~~~VP 79 (288)
T TIGR00167 8 ELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAA----KY----IAGLGAISAMVKAMSEAYPYGVP 79 (288)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchh----hc----cCCHHHHHHHHHHHHHhccCCCc
Confidence 345555555556889999999998654 6668898886543321 11 023777888888888888 899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEE
Q 012815 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (456)
Q Consensus 153 VIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIi 228 (456)
|.+=.|.|. + .+.+++.+++|...|.| |.. | .|.+|-+++-+.+++-++..|. ++=.+
T Consensus 80 V~lHLDHg~-~----~e~i~~ai~~GftSVMi-DgS------~------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~v 141 (288)
T TIGR00167 80 VALHLDHGA-S----EEDCAQAVKAGFSSVMI-DGS------H------EPFEENIELTKKVVERAHKMGVSVEAELGTL 141 (288)
T ss_pred EEEECCCCC-C----HHHHHHHHHcCCCEEEe-cCC------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 999999996 3 34566677899999999 442 3 4778888888888776654331 11122
Q ss_pred Eecchh--hc--ccHHHHHHHHHHhHh-cCCCEEEec-----cC-----C--CHHHHHHHHHhCCCCceeeeeeccCCCC
Q 012815 229 ARTDSR--QA--LSLEESLRRSRAFAD-AGADVLFID-----AL-----A--SKEEMKAFCEISPLVPKMANMLEGGGKT 291 (456)
Q Consensus 229 ARTDA~--~~--~~ldeAI~RakAy~e-AGAD~Ifie-----~~-----~--s~eei~~i~~~v~~vP~~~N~~~~~g~t 291 (456)
+..+.. .. ..+---.+.|+.|.+ .|+|++-+- |. . +.+.++++.+.++ +|+. ++++..+
T Consensus 142 gg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~-vPLV---lHGgSG~ 217 (288)
T TIGR00167 142 GGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN-LPLV---LHGGSGI 217 (288)
T ss_pred cCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC-CCEE---EeCCCCC
Confidence 222211 00 000001245777775 699998652 21 2 5678888888876 6754 4553333
Q ss_pred CCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 292 PILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 292 p~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
|.-...++-+.|++-|=+...+..+.+.++++.+.
T Consensus 218 ~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 252 (288)
T TIGR00167 218 PDEEIKKAISLGVVKVNIDTELQIAFAAAVRNYYA 252 (288)
T ss_pred CHHHHHHHHHcCCeEEEcChHHHHHHHHHHHHHHH
Confidence 32223445579999999999999999999998864
No 58
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=97.39 E-value=0.0044 Score=62.38 Aligned_cols=124 Identities=20% Similarity=0.212 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHhC-ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHH
Q 012815 163 NAMNVKRTVKGYIKAG-FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AG-aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~lde 241 (456)
|.....+.++.+++.| ++||.+ ||+++.-...+.||..+-++++++... ..+-|++=+-+ .+.++
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~--------~GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~~---~~t~~ 84 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYV--------GGSTGENFMLSTEEKKEIFRIAKDEAK---DQIALIAQVGS---VNLKE 84 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEE--------CCcccccccCCHHHHHHHHHHHHHHhC---CCCcEEEecCC---CCHHH
Confidence 5567889999999999 999988 455555567788988888888877653 24444444322 35689
Q ss_pred HHHHHHHhHhcCCCEEEeccC----CCHHHHHHHHH----hCCCCceeeeeeccCCCC-CCCCHHHHHhc
Q 012815 242 SLRRSRAFADAGADVLFIDAL----ASKEEMKAFCE----ISPLVPKMANMLEGGGKT-PILNPLELEEL 302 (456)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~----~s~eei~~i~~----~v~~vP~~~N~~~~~g~t-p~lt~~eL~el 302 (456)
++++++.+.++|||+|++-.+ ++.+++.++-+ ..+.+|++ +...|..+ -.++.+.+.++
T Consensus 85 ~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~--lYn~P~~tg~~l~~~~i~~L 152 (290)
T TIGR00683 85 AVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMI--VYSIPFLTGVNMGIEQFGEL 152 (290)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEE--EEeCccccccCcCHHHHHHH
Confidence 999999999999999988443 45566655443 33335654 22233322 25666655554
No 59
>PLN02417 dihydrodipicolinate synthase
Probab=97.37 E-value=0.0038 Score=62.52 Aligned_cols=123 Identities=21% Similarity=0.249 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
|.....+.++.+++.|+.||.+ ||+++.-...+.+|..+-++.++++.. ..+-|++=+-+ .+.+++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~--------~GstGE~~~ls~~Er~~~~~~~~~~~~---~~~pvi~gv~~---~~t~~~ 85 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIV--------GGTTGEGQLMSWDEHIMLIGHTVNCFG---GKIKVIGNTGS---NSTREA 85 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CccCcchhhCCHHHHHHHHHHHHHHhC---CCCcEEEECCC---ccHHHH
Confidence 5677889999999999999998 455565667888998888888777643 35556655543 346899
Q ss_pred HHHHHHhHhcCCCEEEeccC----CCHHHHHHHHHhCC-CCce-eeeeeccCCCC-CCCCHHHHHhc
Q 012815 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFCEISP-LVPK-MANMLEGGGKT-PILNPLELEEL 302 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~i~~~v~-~vP~-~~N~~~~~g~t-p~lt~~eL~el 302 (456)
+++++.+.++|||++++..+ ++.+++.++-+.+. ..|+ +.|. |..+ -.++++.+.++
T Consensus 86 i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~pi~lYn~---P~~tg~~l~~~~l~~l 149 (280)
T PLN02417 86 IHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMGPTIIYNV---PGRTGQDIPPEVIFKI 149 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhCCEEEEEC---hhHhCcCCCHHHHHHH
Confidence 99999999999999988643 45566655443321 1154 3343 3222 24666555544
No 60
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=97.36 E-value=0.0036 Score=62.82 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHH-hCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHH
Q 012815 163 NAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (456)
Q Consensus 163 ~~~nv~rtVk~l~~-AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~lde 241 (456)
|.....+.++.+++ .|+.||.+ ||+++.-...+.+|..+-++.++++.. ..+-|++=+-+ .+.++
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v--------~GstGE~~~Ls~eEr~~~~~~~~~~~~---~~~~viagvg~---~~t~~ 87 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYV--------GGSTGEAFLLSTEEKKQVLEIVAEEAK---GKVKLIAQVGS---VNTAE 87 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEE--------CCCccccccCCHHHHHHHHHHHHHHhC---CCCCEEecCCC---CCHHH
Confidence 56778999999999 99999988 556665567888998888888887754 35556665532 45799
Q ss_pred HHHHHHHhHhcCCCEEEeccC----CCHHHHH----HHHHhCCCCceeeeeeccCCCC-CCCCHHHHHhc
Q 012815 242 SLRRSRAFADAGADVLFIDAL----ASKEEMK----AFCEISPLVPKMANMLEGGGKT-PILNPLELEEL 302 (456)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~----~s~eei~----~i~~~v~~vP~~~N~~~~~g~t-p~lt~~eL~el 302 (456)
+|+.++.+.++|||++++-.+ ++.+++. ++++..+ +|+++= ..|..+ -.++++.+.++
T Consensus 88 ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~-lPv~iY--n~P~~tg~~l~~~~l~~L 154 (293)
T PRK04147 88 AQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSAD-NPMIVY--NIPALTGVNLSLDQFNEL 154 (293)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC-CCEEEE--eCchhhccCCCHHHHHHH
Confidence 999999999999999987543 3445544 3445555 565432 122211 24666655554
No 61
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.35 E-value=0.007 Score=55.34 Aligned_cols=130 Identities=17% Similarity=0.118 Sum_probs=84.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC-CeEEEEec
Q 012815 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS-DIVIVART 231 (456)
Q Consensus 153 VIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~-dfvIiART 231 (456)
+++..|+|+.+..+..+.++.+++.|++||.+-. +++ +.+++.. +. +..+++.+
T Consensus 1 ~~~~~~~~~~d~~~~~~~~~~~~~~gv~gi~~~g-------------------~~i---~~~~~~~---~~~~~~v~~~v 55 (201)
T cd00945 1 IDLTLLHPDATLEDIAKLCDEAIEYGFAAVCVNP-------------------GYV---RLAADAL---AGSDVPVIVVV 55 (201)
T ss_pred CcccccCCCCCHHHHHHHHHHHHHhCCcEEEECH-------------------HHH---HHHHHHh---CCCCCeEEEEe
Confidence 3567889998989999999999999999998843 222 3333332 22 46667776
Q ss_pred chhh-cccHHHHHHHHHHhHhcCCCEEEeccC----CC------HHHHHHHHHhC-CCCceeeeeeccCCCCCCCCHHH-
Q 012815 232 DSRQ-ALSLEESLRRSRAFADAGADVLFIDAL----AS------KEEMKAFCEIS-PLVPKMANMLEGGGKTPILNPLE- 298 (456)
Q Consensus 232 DA~~-~~~ldeAI~RakAy~eAGAD~Ifie~~----~s------~eei~~i~~~v-~~vP~~~N~~~~~g~tp~lt~~e- 298 (456)
.+.. ....+++++.++.+.++|||++.+... ++ .+.++++++.. .++|+++-.. |+.+ ++.++
T Consensus 56 ~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~--p~~~--~~~~~~ 131 (201)
T cd00945 56 GFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILE--TRGL--KTADEI 131 (201)
T ss_pred cCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEE--CCCC--CCHHHH
Confidence 6532 123789999999999999999988543 23 34555666664 2367655433 2222 23333
Q ss_pred ------HHhcCCCEEeccc
Q 012815 299 ------LEELGFKLVAYPL 311 (456)
Q Consensus 299 ------L~elGv~~Vs~p~ 311 (456)
+++.|+..|-...
T Consensus 132 ~~~~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 132 AKAARIAAEAGADFIKTST 150 (201)
T ss_pred HHHHHHHHHhCCCEEEeCC
Confidence 3457877776544
No 62
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.35 E-value=0.0067 Score=60.86 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=103.1
Q ss_pred ccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhh-------hhcccCC---CCC-CCHHHHHHHHH
Q 012815 75 LSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLALPD---TGF-ISYGEMVDQGQ 143 (456)
Q Consensus 75 ~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSa-------s~lG~PD---~~~-lt~~Eml~~~r 143 (456)
...-+.|++..++-+..++-.++|..++..+++. .+.+.++|.-+.. +.+|.|= .+. .+++|++..++
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e 155 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAE 155 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHH
Confidence 3445678888888788888899999999999998 8999888755432 1235543 233 37777777666
Q ss_pred HHHh----------------------------------ccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCC
Q 012815 144 LITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVS 189 (456)
Q Consensus 144 ~I~r----------------------------------a~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~ 189 (456)
.|.. .+++||++|.+++-|..+.+....+..+.+||.|+.||=-..
T Consensus 156 ~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 156 YIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred HHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 5531 247999999999988777788888888999999999997765
Q ss_pred CCCccCCCCccccCHHHHHHHHHHHHHH
Q 012815 190 PKGCGHTRGRKVVSREEAVMRIKAAVDA 217 (456)
Q Consensus 190 pK~CGH~~gk~lvp~ee~v~kI~AA~~A 217 (456)
|.+-. .+++.-++++++.+-++.++..
T Consensus 236 pd~a~-~D~~~sl~p~~l~~l~~~i~~~ 262 (266)
T PRK13398 236 PEKAL-SDARQTLNFEEMKELVDELKPM 262 (266)
T ss_pred ccccC-CchhhcCCHHHHHHHHHHHHHH
Confidence 54433 4566677777776666655544
No 63
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.33 E-value=0.075 Score=54.06 Aligned_cols=214 Identities=17% Similarity=0.177 Sum_probs=141.1
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC--Cc
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS--IP 152 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~--iP 152 (456)
+-|....+.+-.+-+.|+||.-+++.+ |+.+.+.|.-.+-+.. .+ ..+++.+...++.+++..+ +|
T Consensus 8 ~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~----~~----~~~~~~~~~~~~~~a~~~~~~VP 79 (285)
T PRK07709 8 EMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAA----RH----MTGFKTVVAMVKALIEEMNITVP 79 (285)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchh----hh----cCCHHHHHHHHHHHHHHcCCCCc
Confidence 345555555556889999999998655 5668888876543221 11 0245556677777777665 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEE
Q 012815 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (456)
Q Consensus 153 VIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIi 228 (456)
|.+=.|.|. + .+.+++.+++|...|.|... | .|.+|-+++-+.+++-++..|. ++=-+
T Consensus 80 V~lHLDHg~-~----~e~i~~ai~~GftSVM~DgS-------~------lp~eeNi~~Trevv~~Ah~~gv~VEaElG~i 141 (285)
T PRK07709 80 VAIHLDHGS-S----FEKCKEAIDAGFTSVMIDAS-------H------HPFEENVETTKKVVEYAHARNVSVEAELGTV 141 (285)
T ss_pred EEEECCCCC-C----HHHHHHHHHcCCCEEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 999999995 4 44555778899999999443 2 4778888888888877765331 11112
Q ss_pred Eecchh--h----cccHHHHHHHHHHhH-hcCCCEEEe-----ccC------CCHHHHHHHHHhCCCCceeeeeeccCCC
Q 012815 229 ARTDSR--Q----ALSLEESLRRSRAFA-DAGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGK 290 (456)
Q Consensus 229 ARTDA~--~----~~~ldeAI~RakAy~-eAGAD~Ifi-----e~~------~s~eei~~i~~~v~~vP~~~N~~~~~g~ 290 (456)
+..+.. . -.+. +.|+.|. +.|+|++-+ +|. -+.+.++++.+.++ +|+ +++++..
T Consensus 142 gg~ed~~~~~~~~yT~p----eeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~-iPL---VLHGgSG 213 (285)
T PRK07709 142 GGQEDDVIAEGVIYADP----AECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG-VPL---VLHGGTG 213 (285)
T ss_pred CCccCCcccccccCCCH----HHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC-CCE---EEeCCCC
Confidence 222111 0 0123 4466666 479999875 332 24678888888875 776 4565433
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 291 TPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 291 tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
+|.-.....-+.|++-|=+...+..+.++++++.+.
T Consensus 214 ~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 249 (285)
T PRK07709 214 IPTADIEKAISLGTSKINVNTENQIEFTKAVREVLN 249 (285)
T ss_pred CCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHH
Confidence 332233445679999999999999999999988864
No 64
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=97.31 E-value=0.0075 Score=59.64 Aligned_cols=123 Identities=26% Similarity=0.351 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
|.....+.++.+++.|+.||.+ ||+++.-...+.+|..+-++.++++.. .++-|++=+-+ ...+|+
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~--------~GstGE~~~ls~~Er~~l~~~~~~~~~---~~~~vi~gv~~---~~~~~~ 81 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVV--------LGTTGEAPTLTDEERKEVIEAVVEAVA---GRVPVIAGVGA---NSTREA 81 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCCCcccccCCHHHHHHHHHHHHHHhC---CCCeEEEecCC---ccHHHH
Confidence 5677889999999999999988 455665667888888888888887754 34555554422 346899
Q ss_pred HHHHHHhHhcCCCEEEeccC----CCHHHHHHH----HHhCCCCceeeeeeccCCCC-CCCCHHHHHhc
Q 012815 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAF----CEISPLVPKMANMLEGGGKT-PILNPLELEEL 302 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~i----~~~v~~vP~~~N~~~~~g~t-p~lt~~eL~el 302 (456)
++.++.++++|||++++-.+ ++.+++.++ ++..+ +|+++= ..|..+ -.++++.+.++
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~-~pi~iY--n~P~~tg~~l~~~~~~~L 147 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASD-LPVILY--NIPGRTGVDLSPETIARL 147 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEE--ECccccCCCCCHHHHHHH
Confidence 99999999999999988543 344555444 34433 666432 223221 24666655554
No 65
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=97.31 E-value=0.005 Score=61.55 Aligned_cols=123 Identities=23% Similarity=0.306 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
|.....+.++.+++.|+.|+.+ ||+++.-...+.+|-.+-++.++++.. .++-|++=+-+ .+.+++
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~--------~Gs~GE~~~ls~~Er~~~~~~~~~~~~---~~~~vi~gv~~---~~~~~~ 85 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVV--------VGTTGESPTLTHEEHEELIRAVVEAVN---GRVPVIAGTGS---NSTAEA 85 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCcCCccccCCHHHHHHHHHHHHHHhC---CCCcEEeecCC---chHHHH
Confidence 5567889999999999999988 456665667888888888888877653 34545544322 357899
Q ss_pred HHHHHHhHhcCCCEEEeccC----CCHHHHHHHH----HhCCCCceeeeeeccCCCC-CCCCHHHHHhc
Q 012815 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFC----EISPLVPKMANMLEGGGKT-PILNPLELEEL 302 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~i~----~~v~~vP~~~N~~~~~g~t-p~lt~~eL~el 302 (456)
+++++.+.++|||.+++-.+ ++.+++.++. +..+ +|+++- ..|..+ -.++.+.+.++
T Consensus 86 i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~-~pv~lY--n~P~~~g~~l~~~~~~~L 151 (292)
T PRK03170 86 IELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATD-LPIILY--NVPGRTGVDILPETVARL 151 (292)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEE--ECccccCCCCCHHHHHHH
Confidence 99999999999999988432 3555655543 4444 565432 223211 24677666655
No 66
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.30 E-value=0.0051 Score=59.75 Aligned_cols=178 Identities=18% Similarity=0.205 Sum_probs=102.5
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
-|+.++++|++.+++....-. ..+. ...+..+++|++.+++||+++. |..+.+. ++.+.+.|++
T Consensus 32 ~a~~~~~~G~~~i~i~d~~~~--~~~~--------~~~~~~i~~i~~~~~~pv~~~G--GI~s~~d----~~~~l~~G~~ 95 (243)
T cd04731 32 LAKRYNEQGADELVFLDITAS--SEGR--------ETMLDVVERVAEEVFIPLTVGG--GIRSLED----ARRLLRAGAD 95 (243)
T ss_pred HHHHHHHCCCCEEEEEcCCcc--cccC--------cccHHHHHHHHHhCCCCEEEeC--CCCCHHH----HHHHHHcCCc
Confidence 456788899998888743311 0111 1134667788888899999873 2334333 3456668999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCC-eE--EEEec----------chhhcccHHHHHHHHH
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD-IV--IVART----------DSRQALSLEESLRRSR 247 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~d-fv--IiART----------DA~~~~~ldeAI~Rak 247 (456)
++.+--.. +..+ ++..+|.... +.+ ++ |-.|. +.-......++++.++
T Consensus 96 ~v~ig~~~------------~~~p-~~~~~i~~~~------~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~ 156 (243)
T cd04731 96 KVSINSAA------------VENP-ELIREIAKRF------GSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAK 156 (243)
T ss_pred eEEECchh------------hhCh-HHHHHHHHHc------CCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHH
Confidence 99773221 1122 3344442221 111 11 11121 1111112345678889
Q ss_pred HhHhcCCCEEEeccCCC--------HHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhc-CCCEEeccchHHHHHH
Q 012815 248 AFADAGADVLFIDALAS--------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL-GFKLVAYPLSLIGVSV 318 (456)
Q Consensus 248 Ay~eAGAD~Ifie~~~s--------~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~el-Gv~~Vs~p~~ll~aa~ 318 (456)
.+.++|+|.|.+.++.. .+.++++.+..+ +|+.++ ||-...-..+++.+. |+..|+.+..++..-+
T Consensus 157 ~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~-~pvia~----GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~ 231 (243)
T cd04731 157 EVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVN-IPVIAS----GGAGKPEHFVEAFEEGGADAALAASIFHFGEY 231 (243)
T ss_pred HHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCC-CCEEEe----CCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCC
Confidence 99999999998876542 467888888765 787654 332211234555565 8999998877665443
No 67
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=97.29 E-value=0.0065 Score=60.78 Aligned_cols=132 Identities=21% Similarity=0.170 Sum_probs=85.0
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEec
Q 012815 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVART 231 (456)
Q Consensus 152 PVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiART 231 (456)
|++-=++.|-=|.....+.++.+++.|++||.+ ||+++.-...+.+|..+-++.++++. + + +| +=+
T Consensus 7 a~~TPf~~g~iD~~~~~~li~~l~~~Gv~Gl~~--------~GstGE~~~Lt~eEr~~l~~~~~~~~---~-~-vi-~gv 72 (279)
T cd00953 7 PVITPFTGNKIDKEKFKKHCENLISKGIDYVFV--------AGTTGLGPSLSFQEKLELLKAYSDIT---D-K-VI-FQV 72 (279)
T ss_pred ceecCcCCCCcCHHHHHHHHHHHHHcCCcEEEE--------cccCCCcccCCHHHHHHHHHHHHHHc---C-C-EE-EEe
Confidence 344333334225678999999999999999998 56666667889999888888887764 2 2 33 323
Q ss_pred chhhcccHHHHHHHHHHhHhcCCCEEEecc----C-CCHHHHHHHHHhCC-CCceeeeeeccCCCC-CCCCHHHHHhc
Q 012815 232 DSRQALSLEESLRRSRAFADAGADVLFIDA----L-ASKEEMKAFCEISP-LVPKMANMLEGGGKT-PILNPLELEEL 302 (456)
Q Consensus 232 DA~~~~~ldeAI~RakAy~eAGAD~Ifie~----~-~s~eei~~i~~~v~-~vP~~~N~~~~~g~t-p~lt~~eL~el 302 (456)
- ....+++|++++.++++|||++++-. . ++.+++.+.-+.+. .+|+++ ...|..+ -.++++.+.++
T Consensus 73 g---~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~~lpv~i--Yn~P~~tg~~l~~~~l~~L 145 (279)
T cd00953 73 G---SLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISSPYPTFI--YNYPKATGYDINARMAKEI 145 (279)
T ss_pred C---cCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHhcCCEEE--EeCccccCCCCCHHHHHHH
Confidence 2 24579999999999999999998732 2 35566654333221 256542 2223222 24666555554
No 68
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=97.29 E-value=0.0069 Score=60.87 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
|.....+.++.+++.|++||.+ ||+++.-...+.+|..+-++.++++.. .++-|++=+- . +.+++
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v--------~GstGE~~~Ls~eEr~~l~~~~~~~~~---~~~pvi~gv~---~-~t~~~ 83 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFA--------AGGTGEFFSLTPDEYAQVVRAAVEETA---GRVPVLAGAG---Y-GTATA 83 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhC---CCCCEEEecC---C-CHHHH
Confidence 5677889999999999999998 455566667888988888888887753 3455555442 2 46899
Q ss_pred HHHHHHhHhcCCCEEEeccC----CCHHHHHHHH----HhCCCCcee-eeeeccCCCCCCCCHHHHHhc
Q 012815 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFC----EISPLVPKM-ANMLEGGGKTPILNPLELEEL 302 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~i~----~~v~~vP~~-~N~~~~~g~tp~lt~~eL~el 302 (456)
++.++.++++|||++++-.+ ++.+++.++. +..+ +|++ .| .++. .++++.+.++
T Consensus 84 i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~-~pi~lYn---~~g~--~l~~~~l~~L 146 (289)
T cd00951 84 IAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTD-LGVIVYN---RANA--VLTADSLARL 146 (289)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEe---CCCC--CCCHHHHHHH
Confidence 99999999999999887532 4556655443 4443 6653 44 2221 3666655554
No 69
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=97.26 E-value=0.0064 Score=60.77 Aligned_cols=104 Identities=21% Similarity=0.296 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
|.....+.++.+++.|+.|+.+ ||+++.-...+.+|..+-++.++++.. ...-|++=+- ..+.+++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~--------~GstGE~~~Ls~~Er~~~~~~~~~~~~---~~~~vi~gv~---~~s~~~~ 82 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVV--------VGTTGESPTLSHEEHKKVIEFVVDLVN---GRVPVIAGTG---SNATEEA 82 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CccCcccccCCHHHHHHHHHHHHHHhC---CCCeEEEeCC---CccHHHH
Confidence 5567889999999999999988 566666667888888888888877653 3444554442 2357899
Q ss_pred HHHHHHhHhcCCCEEEeccC----CCHHHHHH----HHHhCCCCcee
Q 012815 243 LRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPKM 281 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~----i~~~v~~vP~~ 281 (456)
|++++.++++|||+|++-.+ ++.+++.+ +++..+ +|++
T Consensus 83 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~-~pi~ 128 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVD-LPII 128 (285)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCC-CCEE
Confidence 99999999999999987543 45566554 344443 5653
No 70
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=97.25 E-value=0.0059 Score=60.64 Aligned_cols=123 Identities=24% Similarity=0.345 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
|.....+.++.+++.|+.|+.+ ||+++.-...+.+|..+-++.++++.. .++.|++=+-+ ...+|+
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v--------~GstGE~~~lt~~Er~~l~~~~~~~~~---~~~~vi~gv~~---~~~~~~ 84 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVV--------CGTTGESPTLSDEEHEAVIEAVVEAVN---GRVPVIAGTGS---NNTAEA 84 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCCCcchhhCCHHHHHHHHHHHHHHhC---CCCcEEeccCC---ccHHHH
Confidence 5567889999999999999988 445555567788888888888877653 34555544322 356899
Q ss_pred HHHHHHhHhcCCCEEEeccC----CCHHHHHHHH----HhCCCCceeeeeeccCCC-CCCCCHHHHHhc
Q 012815 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFC----EISPLVPKMANMLEGGGK-TPILNPLELEEL 302 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~i~----~~v~~vP~~~N~~~~~g~-tp~lt~~eL~el 302 (456)
+++++.+.++|||.|++-.+ ++.+++.++. +..+ +|+++- ..|+. .-.++++.+.++
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~-~pi~lY--n~P~~~g~~ls~~~~~~L 150 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATD-LPVILY--NVPGRTGVNIEPETVLRL 150 (284)
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCC-CCEEEE--EChhHhCCCCCHHHHHHH
Confidence 99999999999999887542 3556655544 4433 665432 22221 124666555544
No 71
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.24 E-value=0.0097 Score=60.45 Aligned_cols=122 Identities=25% Similarity=0.351 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
|.+...+.++.+++.|++||.+ ||+++.-...+.+|..+-++.++++.. ...-|++=+-+ ...+|+
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~--------~GttGE~~~Ls~eEr~~v~~~~v~~~~---grvpviaG~g~---~~t~ea 88 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVV--------LGTTGESPTLTLEERKEVLEAVVEAVG---GRVPVIAGVGS---NSTAEA 88 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCCCccchhcCHHHHHHHHHHHHHHHC---CCCcEEEecCC---CcHHHH
Confidence 5678899999999999999998 566666677889999888888888874 23335555433 356899
Q ss_pred HHHHHHhHhcCCCEEEeccC----CCHH----HHHHHHHhCCCCcee-eeeeccCCCC-CCCCHHHHHhc
Q 012815 243 LRRSRAFADAGADVLFIDAL----ASKE----EMKAFCEISPLVPKM-ANMLEGGGKT-PILNPLELEEL 302 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~e----ei~~i~~~v~~vP~~-~N~~~~~g~t-p~lt~~eL~el 302 (456)
|+.++.+.++|||++++-.+ ++.+ -.++++++.+ +|++ .|. |+.+ ..++++.+.++
T Consensus 89 i~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~-lPvilYN~---P~~tg~~l~~e~i~~l 154 (299)
T COG0329 89 IELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVD-LPVILYNI---PSRTGVDLSPETIARL 154 (299)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcC-CCEEEEeC---ccccCCCCCHHHHHHH
Confidence 99999999999999987543 3433 3445566664 6764 332 3322 35666555554
No 72
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=97.19 E-value=0.0094 Score=60.01 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
|.....+.++.+++.|++|+.+ ||+++.-...+.+|..+-++.++++.. .++-|++=+- . ..+++
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v--------~GstGE~~~Lt~eEr~~v~~~~~~~~~---g~~pvi~gv~---~-~t~~a 88 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFA--------AGGTGEFFSLTPAEYEQVVEIAVSTAK---GKVPVYTGVG---G-NTSDA 88 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEE--------CCCCcCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecC---c-cHHHH
Confidence 5677899999999999999988 456666677889998888888887753 3455555553 1 37999
Q ss_pred HHHHHHhHhcCCCEEEeccC----CCHHHHHH----HHHhCCCCce-eeeeeccCCCCCCCCHHHHHhc
Q 012815 243 LRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPK-MANMLEGGGKTPILNPLELEEL 302 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~----i~~~v~~vP~-~~N~~~~~g~tp~lt~~eL~el 302 (456)
|++++.+.++|||++++-.+ ++.+++.+ +++..+ +|+ +.| .+| . .++++.+.++
T Consensus 89 i~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~-~pvilYn---~~g-~-~l~~~~~~~L 151 (296)
T TIGR03249 89 IEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTD-LGVIVYQ---RDN-A-VLNADTLERL 151 (296)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccC-CCEEEEe---CCC-C-CCCHHHHHHH
Confidence 99999999999999887443 45555544 444454 565 344 112 1 3566555544
No 73
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=97.19 E-value=0.011 Score=61.17 Aligned_cols=160 Identities=20% Similarity=0.202 Sum_probs=112.1
Q ss_pred cccccccccCCCccccccccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhh-------hcccCC
Q 012815 57 TINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAA-------RLALPD 129 (456)
Q Consensus 57 ~~~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas-------~lG~PD 129 (456)
||.++.||+---+. ...-+-|++..++-+..++-.++|.-++..+.+. .|.+.+++.-+... ..|.|=
T Consensus 129 fKpRTsp~sf~G~g----~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~-vd~lqIgAr~~~N~~LL~~va~~~kPV 203 (335)
T PRK08673 129 FKPRTSPYSFQGLG----EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY-VDILQIGARNMQNFDLLKEVGKTNKPV 203 (335)
T ss_pred ecCCCCCccccccc----HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHcCCCcE
Confidence 45566676521111 2334566666666778888899999999999988 99999997654321 345553
Q ss_pred ---CCC-CCHHHHHHHHHHHHh----------------------------------ccCCcEEEeCCCCCCCHHHHHHHH
Q 012815 130 ---TGF-ISYGEMVDQGQLITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKRTV 171 (456)
Q Consensus 130 ---~~~-lt~~Eml~~~r~I~r----------------------------------a~~iPVIaD~DtGYG~~~nv~rtV 171 (456)
.+. .|++|++..++.|.. .+++|||+|.+++-|....+....
T Consensus 204 iLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a 283 (335)
T PRK08673 204 LLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLA 283 (335)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHH
Confidence 233 478888887777642 257999999999978766666777
Q ss_pred HHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhC
Q 012815 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (456)
Q Consensus 172 k~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G 222 (456)
+..+.+||+|+.||=-..|.+-- .+++.-++++++..-++.++.....+|
T Consensus 284 ~AAvA~GAdGliIE~H~~pd~al-sD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 284 LAAVAAGADGLIVEVHPDPEKAL-SDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred HHHHHhCCCEEEEEecCCcccCC-CcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 88889999999999877665543 566667777777766666665544333
No 74
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.14 E-value=0.056 Score=55.88 Aligned_cols=198 Identities=15% Similarity=0.065 Sum_probs=109.6
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCC---------C--------CCCHHHHHHHHHHHHhccCCcEEEeCCCCC---
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDT---------G--------FISYGEMVDQGQLITQAVSIPVIGDGDNGY--- 161 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~---------~--------~lt~~Eml~~~r~I~ra~~iPVIaD~DtGY--- 161 (456)
.+.+..+||-++-+.+...- ...|.|.- + ....+.++++.+... .++||++-+ .|.
T Consensus 75 ~~~~~~~G~Gavv~ktvt~~-p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~--~~~pvivsI-~~~~~~ 150 (344)
T PRK05286 75 IDALGALGFGFVEVGTVTPR-PQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAY--RGIPLGINI-GKNKDT 150 (344)
T ss_pred HHHHHHcCCCEEEeCCcCCC-CCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhc--CCCcEEEEE-ecCCCC
Confidence 34456677877777764431 12333310 1 122556666655533 679999988 332
Q ss_pred --C-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCc-cccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcc
Q 012815 162 --G-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGR-KVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL 237 (456)
Q Consensus 162 --G-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk-~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~ 237 (456)
. ...+..+.++++.+ +|+++-|.=. |.|..+. ..-..+...+-+++++++......++-|..+.-.. .
T Consensus 151 ~~~~~~~d~~~~~~~~~~-~ad~lelN~s-----cP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~--~ 222 (344)
T PRK05286 151 PLEDAVDDYLICLEKLYP-YADYFTVNIS-----SPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPD--L 222 (344)
T ss_pred CcccCHHHHHHHHHHHHh-hCCEEEEEcc-----CCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC--C
Confidence 1 34566666666654 6888877543 5554332 23344555555555555543100024455554322 2
Q ss_pred cHHHHHHHHHHhHhcCCCEEEeccCC--------------------------CHHHHHHHHHhCC-CCceeeeeeccCCC
Q 012815 238 SLEESLRRSRAFADAGADVLFIDALA--------------------------SKEEMKAFCEISP-LVPKMANMLEGGGK 290 (456)
Q Consensus 238 ~ldeAI~RakAy~eAGAD~Ifie~~~--------------------------s~eei~~i~~~v~-~vP~~~N~~~~~g~ 290 (456)
..++..+-+++..++|||.|.+.... +.+.++++.++++ .+|+..+ ||-
T Consensus 223 ~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~----GGI 298 (344)
T PRK05286 223 SDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGV----GGI 298 (344)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEE----CCC
Confidence 34577888999999999999987621 1235556666663 2565533 343
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHH
Q 012815 291 TPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 291 tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
...-+..|+-..|+..|..+..++.
T Consensus 299 ~s~eda~e~l~aGAd~V~v~~~~~~ 323 (344)
T PRK05286 299 DSAEDAYEKIRAGASLVQIYSGLIY 323 (344)
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2222345555578888777666554
No 75
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.11 E-value=0.059 Score=55.25 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=117.5
Q ss_pred ecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCC-CHHHHHHHH
Q 012815 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRTV 171 (456)
Q Consensus 93 ~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG-~~~nv~rtV 171 (456)
|-|+=|..--+++.+.|.+..|+- + +++..+-+. .+. .........-..|+++-. +| +++...+++
T Consensus 17 M~g~td~~fR~l~~~~g~~~~~te-m-vs~~~~~~~-------~~~-~~~~~~~~~~~~~~~vQl---~g~~~~~~~~aa 83 (321)
T PRK10415 17 MAGITDRPFRTLCYEMGAGLTVSE-M-MSSNPQVWE-------SDK-SRLRMVHIDEPGIRTVQI---AGSDPKEMADAA 83 (321)
T ss_pred CCCCCcHHHHHHHHHHCCCEEEEc-c-EEcchhhhc-------CHh-HHHHhccCccCCCEEEEE---eCCCHHHHHHHH
Confidence 348889999999999998776653 1 111001010 010 000000111135666544 56 577888999
Q ss_pred HHHHHhCccEEEeCCCC-CCCCccCCCCcccc-CHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHh
Q 012815 172 KGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (456)
Q Consensus 172 k~l~~AGaaGI~IEDq~-~pK~CGH~~gk~lv-p~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy 249 (456)
+.+.+.|+++|.|-=+. .+|.+.+..|-.+. .++...+-+++++++. +..+.+.-|..-. ...+++++-++.+
T Consensus 84 ~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~---d~pv~vKiR~G~~--~~~~~~~~~a~~l 158 (321)
T PRK10415 84 RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV---DVPVTLKIRTGWA--PEHRNCVEIAQLA 158 (321)
T ss_pred HHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc---CCceEEEEEcccc--CCcchHHHHHHHH
Confidence 88888999999998775 23444444454444 4444444444444432 2344444553211 1224677888899
Q ss_pred HhcCCCEEEeccC---------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHH-hcCCCEEeccchHHHH
Q 012815 250 ADAGADVLFIDAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELE-ELGFKLVAYPLSLIGV 316 (456)
Q Consensus 250 ~eAGAD~Ifie~~---------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~-elGv~~Vs~p~~ll~a 316 (456)
.++|+|.|.+++. .+.+.++++.+.++ +|+..| |+-...-+.+++. +.|+..|.++-.++.-
T Consensus 159 e~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~-iPVI~n----GgI~s~~da~~~l~~~gadgVmiGR~~l~n 230 (321)
T PRK10415 159 EDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS-IPVIAN----GDITDPLKARAVLDYTGADALMIGRAAQGR 230 (321)
T ss_pred HHhCCCEEEEecCccccccCCCcChHHHHHHHHhcC-CcEEEe----CCCCCHHHHHHHHhccCCCEEEEChHhhcC
Confidence 9999999999864 23566778888776 788766 3322112235544 4699999998766544
No 76
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.10 E-value=0.054 Score=55.54 Aligned_cols=182 Identities=16% Similarity=0.108 Sum_probs=110.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCH
Q 012815 125 LALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSR 204 (456)
Q Consensus 125 lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ 204 (456)
.|++. ...+++++.++.+.+.+++||++-+ .|+ +.....+.++.++++|+++|.|-=...|...+.. |. .+.
T Consensus 79 ~gl~n---~g~d~~~~~i~~~~~~~~~pvi~sI-~g~-~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~-g~--~~~ 150 (334)
T PRK07565 79 PAKFY---VGPEEYLELIRRAKEAVDIPVIASL-NGS-SAGGWVDYARQIEQAGADALELNIYYLPTDPDIS-GA--EVE 150 (334)
T ss_pred hhccC---cCHHHHHHHHHHHHHhcCCcEEEEe-ccC-CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCc-cc--cHH
Confidence 35544 5588999888888777789999988 332 4567788889999999999998543212111111 11 122
Q ss_pred HHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCC-----CH--------------
Q 012815 205 EEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA-----SK-------------- 265 (456)
Q Consensus 205 ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~-----s~-------------- 265 (456)
+.+.+-+++++++. +.=|+.+.-. .+++..+-+++..++|||.|.+.... +.
T Consensus 151 ~~~~eil~~v~~~~-----~iPV~vKl~p----~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~ 221 (334)
T PRK07565 151 QRYLDILRAVKSAV-----SIPVAVKLSP----YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTP 221 (334)
T ss_pred HHHHHHHHHHHhcc-----CCcEEEEeCC----CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCc
Confidence 22444445554432 2334444211 22345566888889999999775421 11
Q ss_pred -------HHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHH
Q 012815 266 -------EEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI 328 (456)
Q Consensus 266 -------eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i 328 (456)
+.+.++.+.++ +|+..+ ||-....+..|.-.+|...|-.+..++.-....++...++|
T Consensus 222 ~~~~~al~~v~~~~~~~~-ipIig~----GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L 286 (334)
T PRK07565 222 AELRLPLRWIAILSGRVG-ADLAAT----TGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGL 286 (334)
T ss_pred hhhhHHHHHHHHHHhhcC-CCEEEE----CCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHH
Confidence 22334445554 666543 45443345566667999999999888886555555555555
No 77
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.10 E-value=0.016 Score=55.98 Aligned_cols=169 Identities=15% Similarity=0.211 Sum_probs=100.0
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
-|+..++.|++.+++.-..-. ..+.+ ......+.+++.+++||+++. |..+.+ .++.+.++|+.
T Consensus 35 ~a~~~~~~g~~~i~i~dl~~~--~~~~~--------~n~~~~~~i~~~~~~pv~~~g--gi~~~~----d~~~~~~~G~~ 98 (232)
T TIGR03572 35 AARIYNAKGADELIVLDIDAS--KRGRE--------PLFELISNLAEECFMPLTVGG--GIRSLE----DAKKLLSLGAD 98 (232)
T ss_pred HHHHHHHcCCCEEEEEeCCCc--ccCCC--------CCHHHHHHHHHhCCCCEEEEC--CCCCHH----HHHHHHHcCCC
Confidence 356678889999888743321 11111 123456777788899999862 222333 33446678999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh---------------cccHHHHHHH
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ---------------ALSLEESLRR 245 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~---------------~~~ldeAI~R 245 (456)
+|.+--.. +..+ +.+.++ .+.. +... |+.-.|... .....+.++.
T Consensus 99 ~vilg~~~------------l~~~-~~~~~~---~~~~---~~~~-i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 158 (232)
T TIGR03572 99 KVSINTAA------------LENP-DLIEEA---ARRF---GSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEW 158 (232)
T ss_pred EEEEChhH------------hcCH-HHHHHH---HHHc---CCce-EEEEEEeccCCCCCcEEEEECCCcccCCCCHHHH
Confidence 99773221 1122 233333 2221 2222 222222211 0012346788
Q ss_pred HHHhHhcCCCEEEeccCC--------CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHH----HHhcCCCEEeccchH
Q 012815 246 SRAFADAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE----LEELGFKLVAYPLSL 313 (456)
Q Consensus 246 akAy~eAGAD~Ifie~~~--------s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~e----L~elGv~~Vs~p~~l 313 (456)
++.+.++|+|.|.+.++. +.+.++++++.++ +|+.++ ||- -+.++ |.+.|+..|+.+..+
T Consensus 159 ~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~-ipvia~----GGi---~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 159 AREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVS-IPVIAL----GGA---GSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred HHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCC-CCEEEE----CCC---CCHHHHHHHHHHcCCCEEEEehhh
Confidence 999999999999998753 2578888988876 776654 342 24555 888999999987754
No 78
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=97.09 E-value=0.0079 Score=59.98 Aligned_cols=104 Identities=25% Similarity=0.390 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
|.....+.++.+++.|++|+.+ ||+++.-...+.+|..+-++.++++.. .++-|++-+-+. +.+++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~--------~GstGE~~~Lt~~Er~~l~~~~~~~~~---~~~~vi~gv~~~---st~~~ 85 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVV--------LGSTGEFYSLTDEERKELLEIVVEAAA---GRVPVIAGVGAN---STEEA 85 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEE--------SSTTTTGGGS-HHHHHHHHHHHHHHHT---TSSEEEEEEESS---SHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCCCcccccCCHHHHHHHHHHHHHHcc---CceEEEecCcch---hHHHH
Confidence 4567889999999999999998 455555567788888888888877654 466677765443 57999
Q ss_pred HHHHHHhHhcCCCEEEeccC----CCHHHHHHHH----HhCCCCcee
Q 012815 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFC----EISPLVPKM 281 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~i~----~~v~~vP~~ 281 (456)
|++++.+.++|||++++-.+ .+.+++.++. +..+ +|++
T Consensus 86 i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~-~pi~ 131 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATD-LPII 131 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSS-SEEE
T ss_pred HHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcC-CCEE
Confidence 99999999999999876432 4555555444 4443 5654
No 79
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=97.08 E-value=0.49 Score=49.54 Aligned_cols=220 Identities=13% Similarity=0.157 Sum_probs=146.7
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPV 153 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPV 153 (456)
+-|....+.+-.+.+.|+|+.-+++.+ |+.+.+.|...+-+.. ....++.+...++.+++.. ++||
T Consensus 8 ~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~---------~~~g~~~~~~~v~~~ae~~~~VPV 78 (347)
T PRK13399 8 QLLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGAR---------KYAGDAMLRHMVLAAAEMYPDIPI 78 (347)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchh---------hhCCHHHHHHHHHHHHHhcCCCcE
Confidence 345555555656889999999999865 5568898886643321 1133556777778888777 4999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCC-CCccccCHHHHHHHHHHHHHHhHhhCC----CeEEE
Q 012815 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHT-RGRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (456)
Q Consensus 154 IaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~-~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIi 228 (456)
.+=.|+|. + .+.+++.+++|...|.|... |. ++|.-.|.+|-+++-+.+++-++..|. ++=.+
T Consensus 79 aLHLDHg~-~----~e~i~~Ai~~GFtSVMiDgS-------~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~i 146 (347)
T PRK13399 79 CLHQDHGN-S----PATCQSAIRSGFTSVMMDGS-------LLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCL 146 (347)
T ss_pred EEECCCCC-C----HHHHHHHHhcCCCEEEEeCC-------CCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeec
Confidence 99999996 4 34567778899999999544 33 255567899999999988887765431 11112
Q ss_pred Eecc--------hhh----------cccHHHHHHHHHHhHh-cCCCEEEe-----ccC------C-----CHHHHHHHHH
Q 012815 229 ARTD--------SRQ----------ALSLEESLRRSRAFAD-AGADVLFI-----DAL------A-----SKEEMKAFCE 273 (456)
Q Consensus 229 ARTD--------A~~----------~~~ldeAI~RakAy~e-AGAD~Ifi-----e~~------~-----s~eei~~i~~ 273 (456)
+..+ ... -.. -+.|+.|.+ .|+|++-+ +|. + +.+.+++|.+
T Consensus 147 gg~e~~~~g~ed~~~~~~~~~~~~~~T~----PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~ 222 (347)
T PRK13399 147 GSLETGEAGEEDGVGAEGKLSHDQMLTD----PDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHA 222 (347)
T ss_pred cCcccccccccCCccccccccccccCCC----HHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHh
Confidence 2211 100 012 244666664 69998753 333 1 2457888888
Q ss_pred hCCCCceeeeeeccCCCCC------------------CCCHHHHH---hcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 274 ISPLVPKMANMLEGGGKTP------------------ILNPLELE---ELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 274 ~v~~vP~~~N~~~~~g~tp------------------~lt~~eL~---elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
.++.+|+ +++++..+| .++.++++ ++|++-|=+...+..+.++++++.+.
T Consensus 223 ~v~~vPL---VLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~ 293 (347)
T PRK13399 223 RLPNTHL---VMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLA 293 (347)
T ss_pred hcCCCCE---EEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHH
Confidence 8844675 355543333 23455554 69999999999999999999998864
No 80
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=97.07 E-value=0.014 Score=59.01 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
|.....+.++.+++.|++||.+ ||+++.-...+.+|..+-++.++++.. .++-|++=+. . ..+++
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~--------~GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~---~-~t~~~ 90 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFA--------AGGTGEFFSLTPDEYSQVVRAAVETTA---GRVPVIAGAG---G-GTAQA 90 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecC---C-CHHHH
Confidence 5567899999999999999988 455565667888988888888877653 3455555442 2 57899
Q ss_pred HHHHHHhHhcCCCEEEeccC----CCHHHHHH----HHHhCCCCcee-eeeeccCCCCCCCCHHHHHhc
Q 012815 243 LRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPKM-ANMLEGGGKTPILNPLELEEL 302 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~----i~~~v~~vP~~-~N~~~~~g~tp~lt~~eL~el 302 (456)
++.++.++++|||++++-.+ ++.+++.. +++..+ +|++ .| .++. .++++.+.++
T Consensus 91 i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~-lpi~lYn---~~g~--~l~~~~l~~L 153 (303)
T PRK03620 91 IEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTD-LGVIVYN---RDNA--VLTADTLARL 153 (303)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEc---CCCC--CCCHHHHHHH
Confidence 99999999999999887543 35555544 445554 6753 44 2231 3666555544
No 81
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.04 E-value=0.036 Score=52.97 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=97.9
Q ss_pred HHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012815 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGa 179 (456)
--|+.++++|++++.+--.-.+ ..|.+ +..+.|.+.+++||++- ||.-.. +.++.+.++||
T Consensus 35 ~~A~~~~~~GA~~l~v~~~~~~--~~g~~-----------~~~~~i~~~v~iPi~~~---~~i~~~---~~v~~~~~~Ga 95 (217)
T cd00331 35 EIAKAYEKAGAAAISVLTEPKY--FQGSL-----------EDLRAVREAVSLPVLRK---DFIIDP---YQIYEARAAGA 95 (217)
T ss_pred HHHHHHHHcCCCEEEEEeCccc--cCCCH-----------HHHHHHHHhcCCCEEEC---CeecCH---HHHHHHHHcCC
Confidence 4578888999999965422211 11221 34555555668999973 344322 25678889999
Q ss_pred cEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEe
Q 012815 180 AGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (456)
Q Consensus 180 aGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifi 259 (456)
+||++ ++. ..+.+++.+-++.+ ...|.+.++-..+ . ++++...+.|+|.+.+
T Consensus 96 d~v~l-~~~------------~~~~~~~~~~~~~~----~~~g~~~~v~v~~-------~----~e~~~~~~~g~~~i~~ 147 (217)
T cd00331 96 DAVLL-IVA------------ALDDEQLKELYELA----RELGMEVLVEVHD-------E----EELERALALGAKIIGI 147 (217)
T ss_pred CEEEE-eec------------cCCHHHHHHHHHHH----HHcCCeEEEEECC-------H----HHHHHHHHcCCCEEEE
Confidence 99998 332 22333333333322 3345555444432 2 3366677789999977
Q ss_pred ccC------CCHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 260 DAL------ASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 260 e~~------~s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
.+. ++.+.++++.+.++ .+|+. ..+|-...-+..++.++|+.-|+.+..++..
T Consensus 148 t~~~~~~~~~~~~~~~~l~~~~~~~~pvi----a~gGI~s~edi~~~~~~Ga~gvivGsai~~~ 207 (217)
T cd00331 148 NNRDLKTFEVDLNTTERLAPLIPKDVILV----SESGISTPEDVKRLAEAGADAVLIGESLMRA 207 (217)
T ss_pred eCCCccccCcCHHHHHHHHHhCCCCCEEE----EEcCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 632 34566778877753 24432 2234322235678899999999999877653
No 82
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=97.00 E-value=0.016 Score=59.69 Aligned_cols=199 Identities=15% Similarity=0.025 Sum_probs=115.3
Q ss_pred ecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHh-ccCCcEEEeCCCCCC-CHHHHHHH
Q 012815 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ-AVSIPVIGDGDNGYG-NAMNVKRT 170 (456)
Q Consensus 93 ~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~r-a~~iPVIaD~DtGYG-~~~nv~rt 170 (456)
|-|.=|..-=+++.+.|...++.|-+-.+ .++.-.. ...+ +.. ....|+++-+ +| +++...++
T Consensus 18 M~g~td~~fR~~~~~~g~~~~~~temv~~---~~l~~~~---~~~~------l~~~~~e~p~~vQl---~g~~p~~~~~a 82 (333)
T PRK11815 18 MMDWTDRHCRYFHRLLSRHALLYTEMVTT---GAIIHGD---RERL------LAFDPEEHPVALQL---GGSDPADLAEA 82 (333)
T ss_pred CCCCcCHHHHHHHHHhCCCCEEEECCEEe---ccccccC---HHHH------hccCCCCCcEEEEE---eCCCHHHHHHH
Confidence 33777888777888888744444432222 1111111 1111 111 2247888765 44 57888999
Q ss_pred HHHHHHhCccEEEeCCCC-CCCCccCCCCcccc-CHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012815 171 VKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (456)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~lv-p~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakA 248 (456)
++.+.++|++||.|--+. .++.+....|-.+. .++...+-+++++++. +..+-+--|.-.......+++++-++.
T Consensus 83 A~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v---~~pVsvKiR~g~~~~~t~~~~~~~~~~ 159 (333)
T PRK11815 83 AKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV---SIPVTVKHRIGIDDQDSYEFLCDFVDT 159 (333)
T ss_pred HHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc---CCceEEEEEeeeCCCcCHHHHHHHHHH
Confidence 999999999999997664 23333222233333 4444444445544432 223333334322112235678899999
Q ss_pred hHhcCCCEEEeccCC-----------------CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHH---HHHhcCCCEEe
Q 012815 249 FADAGADVLFIDALA-----------------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPL---ELEELGFKLVA 308 (456)
Q Consensus 249 y~eAGAD~Ifie~~~-----------------s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~---eL~elGv~~Vs 308 (456)
+.++|+|.|.+++.. +.+.++++.+.++.+|+..| |+- .+.+ ++.+ |+..|.
T Consensus 160 l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~n----GgI---~s~eda~~~l~-~aDgVm 231 (333)
T PRK11815 160 VAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEIN----GGI---KTLEEAKEHLQ-HVDGVM 231 (333)
T ss_pred HHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEE----CCc---CCHHHHHHHHh-cCCEEE
Confidence 999999999998632 25577788877655788766 332 2443 3333 688888
Q ss_pred ccchHHHHH
Q 012815 309 YPLSLIGVS 317 (456)
Q Consensus 309 ~p~~ll~aa 317 (456)
++-.++.--
T Consensus 232 IGRa~l~nP 240 (333)
T PRK11815 232 IGRAAYHNP 240 (333)
T ss_pred EcHHHHhCC
Confidence 877655543
No 83
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.022 Score=58.66 Aligned_cols=208 Identities=22% Similarity=0.160 Sum_probs=127.7
Q ss_pred CCceeec--ccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCC-HHHHHHHHHHHHhccCCcEEEeCCCCCCCH
Q 012815 88 PGVHQGP--ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFIS-YGEMVDQGQLITQAVSIPVIGDGDNGYGNA 164 (456)
Q Consensus 88 ~~~lv~p--gayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt-~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~ 164 (456)
+..+.+| |+-|...=+++.+.|...++.|=+-.+ -.+-+++-..+- +.+. .-..|+++=+ +-.++
T Consensus 11 ~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~-~~~~~~~~~~~~~~~~~---------~~e~p~~vQl--~gsdp 78 (323)
T COG0042 11 NRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSA-KALLHGRKKFLLLLDEL---------EEERPVAVQL--GGSDP 78 (323)
T ss_pred CcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEE-hhhccCCcchhhhcCcC---------CCCCCEEEEe--cCCCH
Confidence 3445444 888888888888867633333422211 112222221110 1110 1235655432 32368
Q ss_pred HHHHHHHHHHHHhCccEEEeCCCC-CCCCccCCCCcccc-CHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 165 MNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 165 ~nv~rtVk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~lv-p~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
...+++++...+.|+++|.|.=+. .||.+.+..|..|. .++.+.+-|+|.+++.. ..+.-|--|+--...+ -.+
T Consensus 79 ~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~--~iPVTVKiRlG~d~~~--~~~ 154 (323)
T COG0042 79 ELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG--DIPVTVKIRLGWDDDD--ILA 154 (323)
T ss_pred HHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC--CCCeEEEEecccCccc--ccH
Confidence 889999999999999999998886 46777666666655 66666666666666652 1456666665332211 135
Q ss_pred HHHHHHhHhcCCCEEEeccCC---------CHHHHHHHHHhCCCCceeeeeeccCC-CCCCCCHHHHHhcCCCEEeccch
Q 012815 243 LRRSRAFADAGADVLFIDALA---------SKEEMKAFCEISPLVPKMANMLEGGG-KTPILNPLELEELGFKLVAYPLS 312 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~---------s~eei~~i~~~v~~vP~~~N~~~~~g-~tp~lt~~eL~elGv~~Vs~p~~ 312 (456)
.+=+++..++||+++.||+-+ +-+.++++.+.++.+|+..| |+ .++.--.+-|+.-|+.-|..+-.
T Consensus 155 ~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~N----GdI~s~~~a~~~l~~tg~DgVMigRg 230 (323)
T COG0042 155 LEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIAN----GDIKSLEDAKEMLEYTGADGVMIGRG 230 (323)
T ss_pred HHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeC----CCcCCHHHHHHHHHhhCCCEEEEcHH
Confidence 677889999999999999864 66788899998886788777 22 12211123467778888877654
Q ss_pred HHH
Q 012815 313 LIG 315 (456)
Q Consensus 313 ll~ 315 (456)
.+.
T Consensus 231 a~~ 233 (323)
T COG0042 231 ALG 233 (323)
T ss_pred Hcc
Confidence 433
No 84
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.00 E-value=0.045 Score=56.17 Aligned_cols=178 Identities=17% Similarity=0.132 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHH
Q 012815 133 ISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIK 212 (456)
Q Consensus 133 lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~ 212 (456)
...+.+++..+...+..+.||++-. +|. ++....+.++.++++|+++|.|-=...|..-+ ..|.. ..+...+-++
T Consensus 82 ~g~~~~~~~i~~~~~~~~~pvi~si-~g~-~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~-~~g~~--~~~~~~eiv~ 156 (325)
T cd04739 82 LGPEEYLELIRRAKRAVSIPVIASL-NGV-SAGGWVDYARQIEEAGADALELNIYALPTDPD-ISGAE--VEQRYLDILR 156 (325)
T ss_pred cCHHHHHHHHHHHHhccCCeEEEEe-CCC-CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCC-cccch--HHHHHHHHHH
Confidence 3567777777776555689999998 442 46678889999999999999885542111111 11111 1122334444
Q ss_pred HHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCC-----C---------------------HH
Q 012815 213 AAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA-----S---------------------KE 266 (456)
Q Consensus 213 AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~-----s---------------------~e 266 (456)
+++++. ..++++-=+- .+++..+-+++..++|||.|.+.... + .+
T Consensus 157 ~v~~~~---~iPv~vKl~p------~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~ 227 (325)
T cd04739 157 AVKSAV---TIPVAVKLSP------FFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLR 227 (325)
T ss_pred HHHhcc---CCCEEEEcCC------CccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHH
Confidence 444432 2344444332 12355667788889999999886521 1 12
Q ss_pred HHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHH
Q 012815 267 EMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIK 329 (456)
Q Consensus 267 ei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~ 329 (456)
.+.++.+.++ +|+..+ ||-...-+..|.-.+|...|-.+..++......+.+..++|.
T Consensus 228 ~v~~v~~~~~-ipIig~----GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~ 285 (325)
T cd04739 228 WIAILSGRVK-ASLAAS----GGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLE 285 (325)
T ss_pred HHHHHHcccC-CCEEEE----CCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHH
Confidence 2344555554 666543 443333345555569999999998888766666666666663
No 85
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=96.96 E-value=0.021 Score=57.08 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=108.2
Q ss_pred CcccccccccCCCccccccccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhh-------hhcccC
Q 012815 56 GTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLALP 128 (456)
Q Consensus 56 r~~~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSa-------s~lG~P 128 (456)
-||.++++|+--.. ....-+.|++..++-+..++-.+||..++..+++. .+.+.++|.-+.. +..|.|
T Consensus 60 ~~KpRtsp~s~~g~----g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~~gkP 134 (260)
T TIGR01361 60 AFKPRTSPYSFQGL----GEEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGKP 134 (260)
T ss_pred eecCCCCCcccccc----HHHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEEECcccccCHHHHHHHhcCCCc
Confidence 56667777762111 13445668887777788889999999999999998 9999999765432 234655
Q ss_pred C---CCCC-CHHHHHHHHHHHHh----------------------------------ccCCcEEEeCCCCCCCHHHHHHH
Q 012815 129 D---TGFI-SYGEMVDQGQLITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKRT 170 (456)
Q Consensus 129 D---~~~l-t~~Eml~~~r~I~r----------------------------------a~~iPVIaD~DtGYG~~~nv~rt 170 (456)
= ++.- +++|+...+..|.+ ..++||+.|.++.-|..+.+...
T Consensus 135 Vilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~ 214 (260)
T TIGR01361 135 VLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPL 214 (260)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHH
Confidence 3 3444 88888887776642 24789999999976755555566
Q ss_pred HHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHH
Q 012815 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (456)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~ 215 (456)
.+..+.+||.|+.||=-..|.+-- .+++.-++++++.+-++.++
T Consensus 215 ~~aAva~Ga~gl~iE~H~t~d~a~-~D~~~sl~p~~l~~lv~~i~ 258 (260)
T TIGR01361 215 AKAAIAAGADGLMIEVHPDPEKAL-SDSKQQLTPEEFKRLVKELR 258 (260)
T ss_pred HHHHHHcCCCEEEEEeCCCccccC-CcchhcCCHHHHHHHHHHHh
Confidence 677788999999999776553321 45566777787766665543
No 86
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.95 E-value=0.029 Score=58.73 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=110.1
Q ss_pred CcccccccccCCCccccccccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhh-------hhcccC
Q 012815 56 GTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLALP 128 (456)
Q Consensus 56 r~~~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSa-------s~lG~P 128 (456)
-|+.++.||+---+ ....-+.|++..++-+..++-.+||.-++..+.+. .+++.++|.-+.. +..|.|
T Consensus 153 ~~kpRtsp~~f~g~----~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~gkP 227 (360)
T PRK12595 153 AFKPRTSPYDFQGL----GVEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQIGARNMQNFELLKAAGRVNKP 227 (360)
T ss_pred ccCCCCCCccccCC----CHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHccCCc
Confidence 45555677762111 23345567777777788888899999999999999 9999999765432 134665
Q ss_pred C---CCC-CCHHHHHHHHHHHHh----------------------------------ccCCcEEEeCCCCCCCHHHHHHH
Q 012815 129 D---TGF-ISYGEMVDQGQLITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKRT 170 (456)
Q Consensus 129 D---~~~-lt~~Eml~~~r~I~r----------------------------------a~~iPVIaD~DtGYG~~~nv~rt 170 (456)
= ++. .+++|+...+..|.. .+++||++|.++.-|....+...
T Consensus 228 Vilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~ 307 (360)
T PRK12595 228 VLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPT 307 (360)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHH
Confidence 3 454 688998887776642 25789999999876765556666
Q ss_pred HHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHh
Q 012815 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDAR 218 (456)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar 218 (456)
.+..+.+||+|+.||=-..|..-| .+++.-++++++..-++.++.-.
T Consensus 308 a~aAva~GAdg~~iE~H~dp~~a~-~D~~~sl~p~el~~l~~~i~~~~ 354 (360)
T PRK12595 308 AKAALAIGADGVMAEVHPDPAVAL-SDSAQQMDIPEFDRFLDELKPLA 354 (360)
T ss_pred HHHHHHcCCCeEEEEecCCCCCCC-CchhhhCCHHHHHHHHHHHHHHH
Confidence 677788999999999766554443 35556677777766665555433
No 87
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.94 E-value=0.059 Score=53.23 Aligned_cols=200 Identities=13% Similarity=0.109 Sum_probs=119.9
Q ss_pred ccCChHHHHHHHHhCCcEEEecchHHh-----hh----hcccCCCCCCC---HHH-HHHHHHHHHhccCCcEEEeCCCCC
Q 012815 95 ACFDALSAKLVEKSGFSFCFTSGFSIS-----AA----RLALPDTGFIS---YGE-MVDQGQLITQAVSIPVIGDGDNGY 161 (456)
Q Consensus 95 gayDalSArl~e~aGfdAI~vSG~avS-----as----~lG~PD~~~lt---~~E-ml~~~r~I~ra~~iPVIaD~DtGY 161 (456)
|.-|+--++-... .|..+.++|+..= |+ ..|.... ++. ..+ +-.....+. ...|+++-. ||
T Consensus 3 g~~d~~~~~~~~~-~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef-~~~~e~~~~~i~~e~~~~~--~~~~vivnv--~~ 76 (231)
T TIGR00736 3 GITDAEFCRKFKD-LFAIVTLGGYNADRATYKASRDIEKRGRKEF-SFNLEEFNSYIIEQIKKAE--SRALVSVNV--RF 76 (231)
T ss_pred CcchHHHHHhcCc-CcCEEEECCccCCHHHHHHHHHHHHcCCccc-CcCcccHHHHHHHHHHHHh--hcCCEEEEE--ec
Confidence 4445555544332 3777777776431 11 1243332 222 222 222334442 357998874 44
Q ss_pred CCHHHHHHHHHHHHHhCccEEEeCCCC-CCCCccCCCCccc-cCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccH
Q 012815 162 GNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKV-VSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (456)
Q Consensus 162 G~~~nv~rtVk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~l-vp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~l 239 (456)
.+++...+.++.+.+ ++++|-|-=.. .||.|.+-.|..| .+++.+.+-+++++. .+.++.+--|.... -
T Consensus 77 ~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~----~~~PVsvKiR~~~~----~ 147 (231)
T TIGR00736 77 VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE----LNKPIFVKIRGNCI----P 147 (231)
T ss_pred CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc----CCCcEEEEeCCCCC----c
Confidence 477888888877765 99999887664 3455544445444 366655555555552 24567777776431 1
Q ss_pred HHHHHHHHHhHhcCCCEEEeccCC------CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchH
Q 012815 240 EESLRRSRAFADAGADVLFIDALA------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (456)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~~------s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~l 313 (456)
++.++-+++.+++|||.|-|+... +.+.++++.+.++.+|+..| ++-...=+..|..+.|...|..+-.+
T Consensus 148 ~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgN----GgI~s~eda~e~l~~GAd~VmvgR~~ 223 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGN----NSIDDIESAKEMLKAGADFVSVARAI 223 (231)
T ss_pred chHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEE----CCcCCHHHHHHHHHhCCCeEEEcHhh
Confidence 356788999999999999998743 35678888888754787766 33322223455566898888776543
No 88
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=96.92 E-value=0.38 Score=49.54 Aligned_cols=218 Identities=13% Similarity=0.131 Sum_probs=142.6
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC-Cc
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IP 152 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~-iP 152 (456)
.+-|....+.+-.+-+.|+||.-+++.+ |+.+.+.|...+-+.. . ...++.+...++.+++..+ +|
T Consensus 6 k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~----~-----~~g~~~~~~~~~~~a~~~~~VP 76 (307)
T PRK05835 6 NEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAI----K-----YMGIDMAVGMVKIMCERYPHIP 76 (307)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHH----h-----hCChHHHHHHHHHHHHhcCCCe
Confidence 3456666666666889999999998765 5568888886543321 1 2345567777888888775 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEE
Q 012815 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (456)
Q Consensus 153 VIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIi 228 (456)
|.+=.|+|. + .+.+++.+++|...|.+... | .|.||-+++-+.+++-++..|. ++=.+
T Consensus 77 ValHLDHg~-~----~e~i~~ai~~GftSVM~DgS-------~------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (307)
T PRK05835 77 VALHLDHGT-T----FESCEKAVKAGFTSVMIDAS-------H------HAFEENLELTSKVVKMAHNAGVSVEAELGRL 138 (307)
T ss_pred EEEECCCCC-C----HHHHHHHHHcCCCEEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 999999995 4 45566788899999999443 3 4678888888888876654331 11111
Q ss_pred Eecchh-hcccHH---HHHHHHHHhHh-cCCCEEEe-----ccC--------CCHHHHHHHHHhCCCCceeeeeeccCCC
Q 012815 229 ARTDSR-QALSLE---ESLRRSRAFAD-AGADVLFI-----DAL--------ASKEEMKAFCEISPLVPKMANMLEGGGK 290 (456)
Q Consensus 229 ARTDA~-~~~~ld---eAI~RakAy~e-AGAD~Ifi-----e~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~ 290 (456)
+-.+.. ....-+ --.+.|+.|.+ .|+|++=+ +|. -+.+.++++.+.++ +|+ +++++..
T Consensus 139 gg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~-iPL---VLHGgSG 214 (307)
T PRK05835 139 MGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTN-IPL---VLHGASA 214 (307)
T ss_pred CCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhC-CCE---EEeCCCC
Confidence 111111 000000 01245666774 69998754 332 14578888888875 775 4566444
Q ss_pred CCCC---------------------CHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 291 TPIL---------------------NPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 291 tp~l---------------------t~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
.|.- ...+.-++|++-|=+..-+..+...++++.+.
T Consensus 215 ip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~ 271 (307)
T PRK05835 215 IPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVAN 271 (307)
T ss_pred CchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHH
Confidence 4432 23445679999999999999999999988864
No 89
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.92 E-value=0.15 Score=52.23 Aligned_cols=169 Identities=14% Similarity=0.105 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHhccCCcEEEeCCCCCC------CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCc-cccCHHH
Q 012815 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYG------NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGR-KVVSREE 206 (456)
Q Consensus 134 t~~Eml~~~r~I~ra~~iPVIaD~DtGYG------~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk-~lvp~ee 206 (456)
..+.++...+.... .+.||++-+ .|.. ...+..+.++++.. +|+++-|.=. |-|..+. .....+.
T Consensus 113 g~~~~~~~l~~~~~-~~~plivsi-~g~~~~~~~~~~~d~~~~~~~~~~-~ad~ielN~s-----cP~~~g~~~~~~~~~ 184 (327)
T cd04738 113 GADAVAKRLKKRRP-RGGPLGVNI-GKNKDTPLEDAVEDYVIGVRKLGP-YADYLVVNVS-----SPNTPGLRDLQGKEA 184 (327)
T ss_pred cHHHHHHHHHHhcc-CCCeEEEEE-eCCCCCcccccHHHHHHHHHHHHh-hCCEEEEECC-----CCCCCccccccCHHH
Confidence 35666666665433 579999988 3332 12445555555443 4777766433 5554332 2445565
Q ss_pred HHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC-C----------------------
Q 012815 207 AVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-A---------------------- 263 (456)
Q Consensus 207 ~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~-~---------------------- 263 (456)
+.+-+++++++....+.++-|..+.-.. ...++..+-+++..++|||.|.+... .
T Consensus 185 ~~~iv~av~~~~~~~~~~~Pv~vKl~~~--~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~ 262 (327)
T cd04738 185 LRELLTAVKEERNKLGKKVPLLVKIAPD--LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPL 262 (327)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEeCCC--CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhh
Confidence 6666666666553222234455554321 23467778889999999999987552 1
Q ss_pred ---CHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 264 ---SKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 264 ---s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
..+.++++.+.++ .+|+..+ ||-...-...++-..|...|-++..++.-
T Consensus 263 ~~~~l~~v~~l~~~~~~~ipIi~~----GGI~t~~da~e~l~aGAd~V~vg~~~~~~ 315 (327)
T cd04738 263 KERSTEVLRELYKLTGGKIPIIGV----GGISSGEDAYEKIRAGASLVQLYTGLVYE 315 (327)
T ss_pred hHHHHHHHHHHHHHhCCCCcEEEE----CCCCCHHHHHHHHHcCCCHHhccHHHHhh
Confidence 1345566666663 2565433 34322223455556788888777666543
No 90
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.89 E-value=0.1 Score=52.25 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=89.0
Q ss_pred hHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q 012815 99 ALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (456)
Q Consensus 99 alSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~A 177 (456)
.-.|+.++++|||+|=+- +.-.. .+.-+.-.-+.+.+.+.+++|.+.+++||.+-+-.. ..+..+.++.++++
T Consensus 105 ~~~a~~~~~~G~d~iElN~~cP~~---~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~---~~~~~~~a~~~~~~ 178 (296)
T cd04740 105 VEVAEKLADAGADAIELNISCPNV---KGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN---VTDIVEIARAAEEA 178 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCC---CCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC---chhHHHHHHHHHHc
Confidence 456777788899999775 21211 111111123456677778888888899999986422 23567778889999
Q ss_pred CccEEEeCCCCC----------C---CCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHH
Q 012815 178 GFAGIILEDQVS----------P---KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLR 244 (456)
Q Consensus 178 GaaGI~IEDq~~----------p---K~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~ 244 (456)
|+++|.+-.... | ..+|...|..+.|. ..+-++.++++ .+.+++.++.... -+
T Consensus 179 G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~--~~~~i~~i~~~---~~ipii~~GGI~~---------~~ 244 (296)
T cd04740 179 GADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPI--ALRMVYQVYKA---VEIPIIGVGGIAS---------GE 244 (296)
T ss_pred CCCEEEEECCCcccccccccCceeecCCcceecCcccchH--HHHHHHHHHHh---cCCCEEEECCCCC---------HH
Confidence 999998743211 1 01122334444333 22333333332 2234444444322 14
Q ss_pred HHHHhHhcCCCEEEecc--CCCHHHHHHHHHh
Q 012815 245 RSRAFADAGADVLFIDA--LASKEEMKAFCEI 274 (456)
Q Consensus 245 RakAy~eAGAD~Ifie~--~~s~eei~~i~~~ 274 (456)
.+..+.++|||+|.+-. +.+...+.++.+.
T Consensus 245 da~~~l~~GAd~V~igra~l~~p~~~~~i~~~ 276 (296)
T cd04740 245 DALEFLMAGASAVQVGTANFVDPEAFKEIIEG 276 (296)
T ss_pred HHHHHHHcCCCEEEEchhhhcChHHHHHHHHH
Confidence 56667789999999853 3455566666554
No 91
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.89 E-value=0.035 Score=56.35 Aligned_cols=212 Identities=17% Similarity=0.222 Sum_probs=138.6
Q ss_pred HHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEe
Q 012815 81 LRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (456)
Q Consensus 81 Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD 156 (456)
|++..+.+--+...|+||.-+++.+ |+.+.+.|.-.+-.... .. +++.+...++.+++..++||.+=
T Consensus 9 l~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~-~~--------~~~~~~~~~~~~a~~~~vPValH 79 (287)
T PF01116_consen 9 LKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVK-YM--------GLEYLAAMVKAAAEEASVPVALH 79 (287)
T ss_dssp HHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHH-HH--------HHHHHHHHHHHHHHHSTSEEEEE
T ss_pred HHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhh-hh--------hHHHHHHHHHHHHHHcCCCEEee
Confidence 4444445556888999999998765 56688988876544331 11 67788888999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEEEecc
Q 012815 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVARTD 232 (456)
Q Consensus 157 ~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIiARTD 232 (456)
.|+|.. .+.+++.+++|...|.|... -.|.+|-++.-+.+++-++..|. ++=-++..+
T Consensus 80 LDH~~~-----~e~i~~ai~~GftSVM~DgS-------------~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~e 141 (287)
T PF01116_consen 80 LDHGKD-----FEDIKRAIDAGFTSVMIDGS-------------ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKE 141 (287)
T ss_dssp EEEE-S-----HHHHHHHHHHTSSEEEEE-T-------------TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSC
T ss_pred cccCCC-----HHHHHHHHHhCcccccccCC-------------cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccC
Confidence 999964 56667777889999999443 34678888888888877765431 011112221
Q ss_pred -hhhc--------ccHHHHHHHHHHh-HhcCCCEEEec-----c------CC--CHHHHHHHHHhCCCCceeeeeeccCC
Q 012815 233 -SRQA--------LSLEESLRRSRAF-ADAGADVLFID-----A------LA--SKEEMKAFCEISPLVPKMANMLEGGG 289 (456)
Q Consensus 233 -A~~~--------~~ldeAI~RakAy-~eAGAD~Ifie-----~------~~--s~eei~~i~~~v~~vP~~~N~~~~~g 289 (456)
.... .+. +.|+.| .+.|+|++=+- | .| +.+.++++.+.++.+|+. ++++.
T Consensus 142 d~~~~~~~~~~~~TdP----~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLV---lHGgS 214 (287)
T PF01116_consen 142 DGIESEEETESLYTDP----EEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLV---LHGGS 214 (287)
T ss_dssp TTCSSSTT-TTCSSSH----HHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEE---ESSCT
T ss_pred CCccccccccccccCH----HHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEE---EECCC
Confidence 1100 133 345555 48999998652 2 12 367888999988336753 45543
Q ss_pred CCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 290 KTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 290 ~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
..|.-..++.-++|++-|=++..+..+.+.++++.+.
T Consensus 215 G~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~ 251 (287)
T PF01116_consen 215 GLPDEQIRKAIKNGISKINIGTELRRAFTDALREYLA 251 (287)
T ss_dssp TS-HHHHHHHHHTTEEEEEESHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCceEEEEehHHHHHHHHHHHHHHH
Confidence 3333334556679999999999999999988887754
No 92
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.88 E-value=0.043 Score=52.29 Aligned_cols=197 Identities=22% Similarity=0.213 Sum_probs=108.6
Q ss_pred ccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHH-hccCCcEEEeCCCCCCCHHHHHHHHHH
Q 012815 95 ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLIT-QAVSIPVIGDGDNGYGNAMNVKRTVKG 173 (456)
Q Consensus 95 gayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~-ra~~iPVIaD~DtGYG~~~nv~rtVk~ 173 (456)
++=|...=+++.+.|.+.+|+= +-.+...+.... .+ ..... ...+.|+++=+=. +++....+.++.
T Consensus 9 ~~~~~~fR~l~~~~~~~~~~t~-~~~~~~~~~~~~------~~----~~~~~~~~~~~p~~~qi~g--~~~~~~~~aa~~ 75 (231)
T cd02801 9 GVTDLPFRLLCRRYGADLVYTE-MISAKALLRGNR------KR----LRLLTRNPEERPLIVQLGG--SDPETLAEAAKI 75 (231)
T ss_pred CCcCHHHHHHHHHHCCCEEEec-CEEEhhhhhcCH------HH----HHhhccCccCCCEEEEEcC--CCHHHHHHHHHH
Confidence 5556666666777787777753 111111111111 00 01111 1235888876532 257888999999
Q ss_pred HHHhCccEEEeCCCC-CCCCc-cCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHh
Q 012815 174 YIKAGFAGIILEDQV-SPKGC-GHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD 251 (456)
Q Consensus 174 l~~AGaaGI~IEDq~-~pK~C-GH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~e 251 (456)
+.++|++||.|--.. .++.. ++.++.-+-..+...+.|++.+++. +..+.+-.|.--.. . +++++.++.+.+
T Consensus 76 ~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~---~~~v~vk~r~~~~~--~-~~~~~~~~~l~~ 149 (231)
T cd02801 76 VEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV---PIPVTVKIRLGWDD--E-EETLELAKALED 149 (231)
T ss_pred HHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc---CCCEEEEEeeccCC--c-hHHHHHHHHHHH
Confidence 999999999995431 00000 1112222224454555555555443 23455544531111 1 588899999999
Q ss_pred cCCCEEEeccC---------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhc-CCCEEeccchHHH
Q 012815 252 AGADVLFIDAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL-GFKLVAYPLSLIG 315 (456)
Q Consensus 252 AGAD~Ifie~~---------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~el-Gv~~Vs~p~~ll~ 315 (456)
+|+|.|-+++. .+.+.++++.+... +|+.+| ++-...-+..++-+. |+..|..+-.++.
T Consensus 150 ~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~-ipvi~~----Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 150 AGASALTVHGRTREQRYSGPADWDYIAEIKEAVS-IPVIAN----GDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred hCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC-CeEEEe----CCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 99999966542 24566677777655 787765 232111134555555 7998888765543
No 93
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.87 E-value=0.018 Score=59.01 Aligned_cols=229 Identities=17% Similarity=0.175 Sum_probs=128.8
Q ss_pred ecccCChHHHHHHHHhC-CcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCC-CHHHHHHH
Q 012815 93 GPACFDALSAKLVEKSG-FSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRT 170 (456)
Q Consensus 93 ~pgayDalSArl~e~aG-fdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG-~~~nv~rt 170 (456)
|-|+=|..-=+++.+.| ++.+|+- +- ++..+-+++-....+.+++.. ........|+++-+ +| +++...++
T Consensus 8 Mag~td~~fR~l~~~~g~~~~~~te-mv-s~~~~~~~~~~~~~~~~~~~~--~~~~~~e~p~~vQl---~g~~p~~~~~a 80 (312)
T PRK10550 8 MEGVLDSLVRELLTEVNDYDLCITE-FL-RVVDQLLPVKVFHRLCPELHN--ASRTPSGTLVRIQL---LGQYPQWLAEN 80 (312)
T ss_pred CCCCcCHHHHHHHHHhCCCCEEEeC-CE-EechhcccchhHHHHhHHhcc--cCCCCCCCcEEEEe---ccCCHHHHHHH
Confidence 44777777777777787 6766653 11 110011211111111111100 00112247888765 45 57888899
Q ss_pred HHHHHHhCccEEEeCCCC-CCCCccCCCCcccc-CHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012815 171 VKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (456)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~lv-p~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakA 248 (456)
++.+.++|+++|.|-=+. .||....-.|-.|. .++...+-+++++++. +.++-|..|+-.-. ...+++++-++.
T Consensus 81 A~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~---~~~~pVsvKiR~g~-~~~~~~~~~a~~ 156 (312)
T PRK10550 81 AARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAV---PAHLPVTVKVRLGW-DSGERKFEIADA 156 (312)
T ss_pred HHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhc---CCCcceEEEEECCC-CCchHHHHHHHH
Confidence 999999999999997664 33333222333333 3333333344444432 22455555543211 123568899999
Q ss_pred hHhcCCCEEEeccCC----------CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCH---HH-HHhcCCCEEeccchHH
Q 012815 249 FADAGADVLFIDALA----------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNP---LE-LEELGFKLVAYPLSLI 314 (456)
Q Consensus 249 y~eAGAD~Ifie~~~----------s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~---~e-L~elGv~~Vs~p~~ll 314 (456)
+.++|+|.|-|++-. +.+.++++.+.++ +|+..| |+ ..|. ++ |++-|+..|.+|-.++
T Consensus 157 l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~-iPVi~n----Gd---I~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 157 VQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLT-IPVIAN----GE---IWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcC-CcEEEe----CC---cCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 999999999998731 3556888888876 888876 23 2244 33 4457899888877655
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcC
Q 012815 315 GVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLG 350 (456)
Q Consensus 315 ~aa~~A~~~~l~~i~~g~~~~~~~~~~~~e~~~lvg 350 (456)
.-- ...++++.|. + .++++|+.+++-
T Consensus 229 ~nP-----~lf~~~~~g~-~----~~~~~e~~~~~~ 254 (312)
T PRK10550 229 NIP-----NLSRVVKYNE-P----RMPWPEVVALLQ 254 (312)
T ss_pred hCc-----HHHHHhhcCC-C----CCCHHHHHHHHH
Confidence 543 2334454443 1 246777755443
No 94
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=96.84 E-value=0.038 Score=55.08 Aligned_cols=166 Identities=23% Similarity=0.191 Sum_probs=98.7
Q ss_pred hHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCC-CHHHHHHHHHHHHHh
Q 012815 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRTVKGYIKA 177 (456)
Q Consensus 99 alSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG-~~~nv~rtVk~l~~A 177 (456)
.--|+.++++|++++.+ +.-|+...=+ ++.++.+++.+++||+. -| |= ++. .+....++
T Consensus 73 ~~~A~~~~~~GA~aisv---------lte~~~f~g~----~~~l~~v~~~v~iPvl~-kd--fi~~~~----qi~~a~~~ 132 (260)
T PRK00278 73 VEIAKAYEAGGAACLSV---------LTDERFFQGS----LEYLRAARAAVSLPVLR-KD--FIIDPY----QIYEARAA 132 (260)
T ss_pred HHHHHHHHhCCCeEEEE---------ecccccCCCC----HHHHHHHHHhcCCCEEe-ee--ecCCHH----HHHHHHHc
Confidence 45677888899999843 2233321112 34556677778999997 23 43 232 35677789
Q ss_pred CccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 178 GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 178 GaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
||++|++-... .+.+ .++..++..+.+|-..++=-.+ .+|+ +| ..++|||.|
T Consensus 133 GAD~VlLi~~~-------------l~~~----~l~~li~~a~~lGl~~lvevh~-------~~E~-~~---A~~~gadiI 184 (260)
T PRK00278 133 GADAILLIVAA-------------LDDE----QLKELLDYAHSLGLDVLVEVHD-------EEEL-ER---ALKLGAPLI 184 (260)
T ss_pred CCCEEEEEecc-------------CCHH----HHHHHHHHHHHcCCeEEEEeCC-------HHHH-HH---HHHcCCCEE
Confidence 99999995442 1222 3444444445444333332222 2333 33 447899999
Q ss_pred EeccC------CCHHHHHHHHHhCCC-CceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 258 FIDAL------ASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 258 fie~~------~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
-+... ++.+...++.+.+|. +|+ +.++|..+| -+..++.++|+.-|..|..++++
T Consensus 185 gin~rdl~~~~~d~~~~~~l~~~~p~~~~v---IaegGI~t~-ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 185 GINNRNLKTFEVDLETTERLAPLIPSDRLV---VSESGIFTP-EDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred EECCCCcccccCCHHHHHHHHHhCCCCCEE---EEEeCCCCH-HHHHHHHHcCCCEEEECHHHcCC
Confidence 88751 355667777776653 122 334433332 24567888999999999987765
No 95
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.84 E-value=0.025 Score=56.50 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=106.9
Q ss_pred CcccccccccCCCccccccccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhh-------hhcccC
Q 012815 56 GTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLALP 128 (456)
Q Consensus 56 r~~~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSa-------s~lG~P 128 (456)
-||.+++||+---+. ...-+.|++..++-+..++-.+||.-++..+++ ..|.+.+++.-+.. +..|.|
T Consensus 50 ~~kpRts~~sf~G~G----~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e-~vdilqIgs~~~~n~~LL~~va~tgkP 124 (250)
T PRK13397 50 AYKPRTSAASFQGLG----LQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD-YLDVIQVGARNMQNFEFLKTLSHIDKP 124 (250)
T ss_pred ccCCCCCCcccCCCC----HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh-cCCEEEECcccccCHHHHHHHHccCCe
Confidence 355667888732222 234566777777777888889999999999988 69999999755432 134655
Q ss_pred C---CC-CCCHHHHHHHHHHHHh----------------------------------ccCCcEEEeCCCCCCCHHHHHHH
Q 012815 129 D---TG-FISYGEMVDQGQLITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKRT 170 (456)
Q Consensus 129 D---~~-~lt~~Eml~~~r~I~r----------------------------------a~~iPVIaD~DtGYG~~~nv~rt 170 (456)
= .+ ..+++|+...++.|.. .+++||++|.-+.-|..+-|...
T Consensus 125 Vilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~ 204 (250)
T PRK13397 125 ILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPA 204 (250)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHH
Confidence 3 34 6788888887776642 25689999988765655566677
Q ss_pred HHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHH
Q 012815 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (456)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~A 213 (456)
.+..+.+||+|+.||=...|.+- -.+|...++++++.+-++.
T Consensus 205 a~AAvA~GAdGl~IE~H~~P~~A-~sD~~q~l~~~~l~~l~~~ 246 (250)
T PRK13397 205 AKIAKAVGANGIMMEVHPDPDHA-LSDAAQQIDYKQLEQLGQE 246 (250)
T ss_pred HHHHHHhCCCEEEEEecCCcccc-cCchhhhCCHHHHHHHHHH
Confidence 77888999999999987766543 3456667777776655543
No 96
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=96.83 E-value=0.55 Score=48.70 Aligned_cols=217 Identities=13% Similarity=0.141 Sum_probs=142.2
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc--CCc
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIP 152 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~--~iP 152 (456)
.-|....+.+-.+-+.|+|+.-+++.+ |+.+.+.|.-.+-... .|. +.-.+..+...++..++.. ++|
T Consensus 14 ~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~----~~~--g~~~~~~~~~~~~~~a~~a~~~VP 87 (321)
T PRK07084 14 EMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGAR----KYA--NATLLRYMAQGAVEYAKELGCPIP 87 (321)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHH----hhC--CchHHHHHHHHHHHHHHHcCCCCc
Confidence 445555555556889999999999865 5568888876643321 221 1112455666777777755 799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEE
Q 012815 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (456)
Q Consensus 153 VIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIi 228 (456)
|.+=.|+|. + .+.+++.+++|...|.|... | .|.+|-++.-+.+++-++..|. ++=-+
T Consensus 88 V~lHLDHg~-~----~e~i~~ai~~GftSVMiD~S-------~------lp~eeNI~~T~evv~~Ah~~GvsVEaElG~i 149 (321)
T PRK07084 88 IVLHLDHGD-S----FELCKDCIDSGFSSVMIDGS-------H------LPYEENVALTKKVVEYAHQFDVTVEGELGVL 149 (321)
T ss_pred EEEECCCCC-C----HHHHHHHHHcCCCEEEeeCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeee
Confidence 999999984 3 34567888899999999443 3 3678888888888877765331 11111
Q ss_pred Eecchh-h-----cccHHHHHHHHHHhHh-cCCCEEEe-----ccC-----------CCHHHHHHHHHhCCCCceeeeee
Q 012815 229 ARTDSR-Q-----ALSLEESLRRSRAFAD-AGADVLFI-----DAL-----------ASKEEMKAFCEISPLVPKMANML 285 (456)
Q Consensus 229 ARTDA~-~-----~~~ldeAI~RakAy~e-AGAD~Ifi-----e~~-----------~s~eei~~i~~~v~~vP~~~N~~ 285 (456)
+-.+.. . -.+. +.|+.|.+ .|+|++-+ +|. -+.+.+++|.+.++.+|+ ++
T Consensus 150 gg~ed~~~~~~~~~T~p----eeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPL---VL 222 (321)
T PRK07084 150 AGVEDEVSAEHHTYTQP----EEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPI---VL 222 (321)
T ss_pred cCccCCccCcccccCCH----HHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCE---EE
Confidence 111111 0 0122 44666664 69998764 332 145788888888844675 45
Q ss_pred ccCCCCC------------------CCCHHHHH---hcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 286 EGGGKTP------------------ILNPLELE---ELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 286 ~~~g~tp------------------~lt~~eL~---elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
+++..+| .++.++++ +.|++-|-+...+..+.++++++.+.
T Consensus 223 HGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~l~ 284 (321)
T PRK07084 223 HGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGRLAMTAAIRKVFD 284 (321)
T ss_pred eCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceeccchHHHHHHHHHHHHHHH
Confidence 6544334 56666665 69999999999999999999998864
No 97
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.82 E-value=0.011 Score=58.61 Aligned_cols=174 Identities=16% Similarity=0.165 Sum_probs=100.1
Q ss_pred eccccCCCCCccceeecceeeeecccchh--hhhcccCCCCcccccccccCCCccccccccHHHHHHHHHhCCCceeec-
Q 012815 18 CLFHSNSRPSSFLGINNNTISFNKTNTNT--LLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGP- 94 (456)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pr~~~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv~p- 94 (456)
.+|-..-+++.+-+++|-+=-.+-+.+.. .+......-+|..+.-.--.-++.++- ...-+.=+.|.+ .++.++|
T Consensus 52 ~~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~-~etl~Aae~Lv~-eGF~VlPY 129 (247)
T PF05690_consen 52 DNILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDP-IETLKAAEILVK-EGFVVLPY 129 (247)
T ss_dssp HHCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-H-HHHHHHHHHHHH-TT-EEEEE
T ss_pred ccHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCCh-hHHHHHHHHHHH-CCCEEeec
Confidence 34555566678888999776555544443 666677778888874332222222221 111222334444 5577777
Q ss_pred ccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHH
Q 012815 95 ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGY 174 (456)
Q Consensus 95 gayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l 174 (456)
..-|...|+-++++|+.+|.--|.-+. |-+|+-+ . +..+.|.+..++|||+|+ |-|.+.++. ..
T Consensus 130 ~~~D~v~akrL~d~GcaavMPlgsPIG-Sg~Gi~n-----~----~~l~~i~~~~~vPvIvDA--GiG~pSdaa----~A 193 (247)
T PF05690_consen 130 CTDDPVLAKRLEDAGCAAVMPLGSPIG-SGRGIQN-----P----YNLRIIIERADVPVIVDA--GIGTPSDAA----QA 193 (247)
T ss_dssp E-S-HHHHHHHHHTT-SEBEEBSSSTT-T---SST-----H----HHHHHHHHHGSSSBEEES-----SHHHHH----HH
T ss_pred CCCCHHHHHHHHHCCCCEEEecccccc-cCcCCCC-----H----HHHHHHHHhcCCcEEEeC--CCCCHHHHH----HH
Confidence 667899999999999999998766664 3455543 2 456677777799999997 788887766 44
Q ss_pred HHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 175 IKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 175 ~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
.|.|++||.+.--+. +. -++-.|++-.+.|++|.+
T Consensus 194 MElG~daVLvNTAiA--~A--------~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 194 MELGADAVLVNTAIA--KA--------KDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp HHTT-SEEEESHHHH--TS--------SSHHHHHHHHHHHHHHHH
T ss_pred HHcCCceeehhhHHh--cc--------CCHHHHHHHHHHHHHHHH
Confidence 568999999965431 11 134467777777777765
No 98
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.81 E-value=0.037 Score=57.80 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=114.2
Q ss_pred CCCcccccccccCCCccccccccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhh-------hcc
Q 012815 54 NPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAA-------RLA 126 (456)
Q Consensus 54 ~pr~~~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas-------~lG 126 (456)
-.-|+.++.||+---+ ....-+-|++..++-+..++-.+||.-++..+++. .|.+.+++.-+... ..|
T Consensus 134 ~g~~kpRtsp~sf~G~----g~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~-~d~lqIga~~~~n~~LL~~va~t~ 208 (352)
T PRK13396 134 GGAYKPRTSPYAFQGH----GESALELLAAAREATGLGIITEVMDAADLEKIAEV-ADVIQVGARNMQNFSLLKKVGAQD 208 (352)
T ss_pred eeeecCCCCCcccCCc----hHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh-CCeEEECcccccCHHHHHHHHccC
Confidence 3567777788873111 23445667777777778888999999999999988 89999997654432 235
Q ss_pred cCC---CCC-CCHHHHHHHHHHHHh-----------------------------------ccCCcEEEeCCCCCCCHHHH
Q 012815 127 LPD---TGF-ISYGEMVDQGQLITQ-----------------------------------AVSIPVIGDGDNGYGNAMNV 167 (456)
Q Consensus 127 ~PD---~~~-lt~~Eml~~~r~I~r-----------------------------------a~~iPVIaD~DtGYG~~~nv 167 (456)
.|= .+. .|++|++..++.|.. .+++|||+|.=++-|....+
T Consensus 209 kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~ 288 (352)
T PRK13396 209 KPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYV 288 (352)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccCCcHHHH
Confidence 543 233 388888887777632 24799999999866655556
Q ss_pred HHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhC
Q 012815 168 KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (456)
Q Consensus 168 ~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G 222 (456)
....+..+.+||+|+.||=-..|.+-- .++..-++++++.+-++.++.....+|
T Consensus 289 ~~~a~AAva~GAdGliIE~H~~pd~Al-sD~~qsl~p~~~~~l~~~i~~i~~~~g 342 (352)
T PRK13396 289 PSMAMAAIAAGTDSLMIEVHPNPAKAL-SDGPQSLTPDRFDRLMQELAVIGKTVG 342 (352)
T ss_pred HHHHHHHHhhCCCeEEEEecCCcccCC-ChhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 677788889999999999876664432 266667777777776666666554443
No 99
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.80 E-value=0.065 Score=53.96 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=108.5
Q ss_pred cccccccCCCccccccccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchH-------HhhhhcccCC--
Q 012815 59 NRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFS-------ISAARLALPD-- 129 (456)
Q Consensus 59 ~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~a-------vSas~lG~PD-- 129 (456)
.+++||+=--+.++ ..-+-|++..+.-+..++-.++|.-.+..+.+. .|.+.++..- .++...|.|=
T Consensus 54 pRTSp~sFqG~G~e---eGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~-~DilQIgArn~rn~~LL~a~g~t~kpV~l 129 (264)
T PRK05198 54 NRSSIHSFRGPGLE---EGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV-VDVLQIPAFLCRQTDLLVAAAKTGKVVNI 129 (264)
T ss_pred CCCCCCCCCCCChH---HHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh-CcEEEECchhcchHHHHHHHhccCCeEEe
Confidence 56788873222222 445667777777677888899999999999988 9999998632 2222234432
Q ss_pred --CCCCCHHHHHHHHHHHHh-------------------------------ccCCcEEEeCCCC-----------CCCHH
Q 012815 130 --TGFISYGEMVDQGQLITQ-------------------------------AVSIPVIGDGDNG-----------YGNAM 165 (456)
Q Consensus 130 --~~~lt~~Eml~~~r~I~r-------------------------------a~~iPVIaD~DtG-----------YG~~~ 165 (456)
...++.+||+..++.|.. ..++|||+|.=++ -|..+
T Consensus 130 KrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~~k~~~lPVi~DpSHsvq~pg~~~~~s~G~r~ 209 (264)
T PRK05198 130 KKGQFLAPWDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMRETGAPVIFDATHSVQLPGGQGGSSGGQRE 209 (264)
T ss_pred cCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhhhHHHhhCCCCEEEeCCccccCCCCCCCCCCCcHH
Confidence 345899999998888753 2459999999886 45566
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHH
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD 216 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~ 216 (456)
-|....+..+.+||+|+.||=-..|.+ .-.+|...++.+++.+-++.++.
T Consensus 210 ~v~~la~AAvA~GadGl~iEvHpdP~~-AlsDg~q~l~~~~~~~ll~~l~~ 259 (264)
T PRK05198 210 FVPVLARAAVAVGVAGLFIETHPDPDN-ALSDGPNMLPLDKLEPLLEQLKA 259 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCccc-cCCCccccCCHHHHHHHHHHHHH
Confidence 788888899999999999997665542 34567777787777666555443
No 100
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=96.79 E-value=0.015 Score=58.24 Aligned_cols=111 Identities=25% Similarity=0.341 Sum_probs=82.2
Q ss_pred HHHHhCCCceeec-ccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCC
Q 012815 82 RQILELPGVHQGP-ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (456)
Q Consensus 82 r~ll~~~~~lv~p-gayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtG 160 (456)
+.|. +.++.++| ..-|...|+-++++|+.+|.--|.-+- |-+|+.+ .+..+.|.+..++||++| .|
T Consensus 131 e~Lv-~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIG-Sg~Gl~n---------~~~l~~i~e~~~vpVivd--AG 197 (267)
T CHL00162 131 EFLV-KKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIG-SGQGLQN---------LLNLQIIIENAKIPVIID--AG 197 (267)
T ss_pred HHHH-HCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCccc-CCCCCCC---------HHHHHHHHHcCCCcEEEe--CC
Confidence 3444 45677777 677999999999999999987766664 4456644 245677888888999999 67
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 161 YG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
-|.+.+++ ...+.|++||-+--... ++ -++.+|+.-++.|++|.+
T Consensus 198 Igt~sDa~----~AmElGaDgVL~nSaIa--kA--------~dP~~mA~a~~~AV~AGR 242 (267)
T CHL00162 198 IGTPSEAS----QAMELGASGVLLNTAVA--QA--------KNPEQMAKAMKLAVQAGR 242 (267)
T ss_pred cCCHHHHH----HHHHcCCCEEeecceee--cC--------CCHHHHHHHHHHHHHHHH
Confidence 77877776 45568999999866542 11 134789999999988875
No 101
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.76 E-value=0.0029 Score=64.34 Aligned_cols=147 Identities=24% Similarity=0.295 Sum_probs=88.5
Q ss_pred CcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCC-CCCCccCCCCcccc-CHHHHHHHHHHHHHHhHhhCCCeEE
Q 012815 151 IPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVI 227 (456)
Q Consensus 151 iPVIaD~DtGYG-~~~nv~rtVk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~lv-p~ee~v~kI~AA~~Ar~~~G~dfvI 227 (456)
.|+++=+ +| +++...++++.+.+.|+++|.|-=+- .||.+.+..|..|+ .++.+.+-|++++++.. ..+-+
T Consensus 54 ~p~~~Ql---~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~---~pvsv 127 (309)
T PF01207_consen 54 RPLIVQL---FGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP---IPVSV 127 (309)
T ss_dssp -TEEEEE---E-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S---SEEEE
T ss_pred cceeEEE---eeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc---cceEE
Confidence 6777654 35 57889999988888899999998775 34433333444554 55555555566555532 34555
Q ss_pred EEecchhhcccHHHHHHHHHHhHhcCCCEEEecc---------CCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHH
Q 012815 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDA---------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE 298 (456)
Q Consensus 228 iARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~---------~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~e 298 (456)
--|+--. ...++.++-++.+.++|++.|.||+ ..+-+.++++.+.++ +|+..| |+ ..+.++
T Consensus 128 KiR~g~~--~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~-ipvi~N----Gd---I~s~~d 197 (309)
T PF01207_consen 128 KIRLGWD--DSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP-IPVIAN----GD---IFSPED 197 (309)
T ss_dssp EEESECT----CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T-SEEEEE----SS-----SHHH
T ss_pred ecccccc--cchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc-ceeEEc----Cc---cCCHHH
Confidence 5554222 2347789999999999999999998 346678899999988 899888 23 345555
Q ss_pred HHh----cCCCEEeccchH
Q 012815 299 LEE----LGFKLVAYPLSL 313 (456)
Q Consensus 299 L~e----lGv~~Vs~p~~l 313 (456)
..+ -|+.-|..+-.+
T Consensus 198 ~~~~~~~tg~dgvMigRga 216 (309)
T PF01207_consen 198 AERMLEQTGADGVMIGRGA 216 (309)
T ss_dssp HHHHCCCH-SSEEEESHHH
T ss_pred HHHHHHhcCCcEEEEchhh
Confidence 443 378877776543
No 102
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=96.75 E-value=0.11 Score=53.63 Aligned_cols=212 Identities=19% Similarity=0.166 Sum_probs=117.2
Q ss_pred CCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc---CCcEEEeC--------------------CCCCC---
Q 012815 109 GFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV---SIPVIGDG--------------------DNGYG--- 162 (456)
Q Consensus 109 GfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~---~iPVIaD~--------------------DtGYG--- 162 (456)
|+-.|.+.+..+.....++|....+.-++.+...+++++++ +..+++=. +.++.
T Consensus 46 G~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~ 125 (353)
T cd02930 46 GVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPR 125 (353)
T ss_pred CceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCC
Confidence 66666666555543334556544455566777777766532 22232221 11111
Q ss_pred --C-------HHHHHHHHHHHHHhCccEEEeCCC-----------CCCCCccCCCCccccC-HHHHHHHHHHHHHHhHhh
Q 012815 163 --N-------AMNVKRTVKGYIKAGFAGIILEDQ-----------VSPKGCGHTRGRKVVS-REEAVMRIKAAVDARKES 221 (456)
Q Consensus 163 --~-------~~nv~rtVk~l~~AGaaGI~IEDq-----------~~pK~CGH~~gk~lvp-~ee~v~kI~AA~~Ar~~~ 221 (456)
+ .....+.+++++++|.+||.|-.. ...||...-+|- +.. .....+-|++++++ .
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGs-lenR~r~~~eiv~aIR~~---v 201 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGS-FENRMRFPVEIVRAVRAA---V 201 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCC-HHHHhHHHHHHHHHHHHH---c
Confidence 0 123456667788899999999441 123555444442 221 22233334444333 4
Q ss_pred CCCeEEEEecchh----hcccHHHHHHHHHHhHhcCCCEEEec-----cC-C----------CHHHHHHHHHhCCCCcee
Q 012815 222 GSDIVIVARTDSR----QALSLEESLRRSRAFADAGADVLFID-----AL-A----------SKEEMKAFCEISPLVPKM 281 (456)
Q Consensus 222 G~dfvIiARTDA~----~~~~ldeAI~RakAy~eAGAD~Ifie-----~~-~----------s~eei~~i~~~v~~vP~~ 281 (456)
|+||.|.-|.-.. ....++|+++-++.++++|+|.|-+- .. + ..+.++++.+.++ +|+.
T Consensus 202 G~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~-iPVi 280 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD-IPVI 280 (353)
T ss_pred CCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC-CCEE
Confidence 7899998886542 22478999999999999999999772 11 1 1334567777776 7876
Q ss_pred eeeeccCCCCCCCCHHHHHhcC-CCEEeccchHHHHHHHHHHHHHHHHHcCCCC
Q 012815 282 ANMLEGGGKTPILNPLELEELG-FKLVAYPLSLIGVSVRAMQDALTAIKGGRIP 334 (456)
Q Consensus 282 ~N~~~~~g~tp~lt~~eL~elG-v~~Vs~p~~ll~aa~~A~~~~l~~i~~g~~~ 334 (456)
.+ ++-...-..+++-+.| +..|.++-.++. --+....+++|+..
T Consensus 281 ~~----G~i~~~~~a~~~i~~g~~D~V~~gR~~l~-----dP~~~~k~~~g~~~ 325 (353)
T cd02930 281 AS----NRINTPEVAERLLADGDADMVSMARPFLA-----DPDFVAKAAAGRAD 325 (353)
T ss_pred Ec----CCCCCHHHHHHHHHCCCCChhHhhHHHHH-----CccHHHHHHhCCcc
Confidence 54 1211111234444444 777766554433 23556667777543
No 103
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.68 E-value=0.042 Score=55.44 Aligned_cols=140 Identities=23% Similarity=0.279 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhCccEEEeCCCC--------CC---CCccCCCCccccC-HHHHHHHHHHHHHHhHhhCCCeEEEEecchh
Q 012815 167 VKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVS-REEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~--------~p---K~CGH~~gk~lvp-~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~ 234 (456)
..+.+++++++|++||.|--.. .| +|...-+|- +.. .+...+.|++++++ .|+++.|..|....
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs-~enr~r~~~eii~avr~~---~g~d~~i~vris~~ 218 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGS-LENRARFLLEIVAAVREA---VGPDFPVGVRLSAD 218 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCC-HHHHHHHHHHHHHHHHHH---cCCCceEEEEechh
Confidence 4556678889999999996531 12 232222221 211 12233444444443 46788888886653
Q ss_pred h----cccHHHHHHHHHHhHhcCCCEEEeccC-----------------CCHHHHHHHHHhCCCCceeeeeeccCCCCCC
Q 012815 235 Q----ALSLEESLRRSRAFADAGADVLFIDAL-----------------ASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (456)
Q Consensus 235 ~----~~~ldeAI~RakAy~eAGAD~Ifie~~-----------------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~ 293 (456)
. ....+++++-++.+.++|+|.|-+... ...+.++++.+.++ +|+..+ ++-...
T Consensus 219 ~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~----Ggi~t~ 293 (327)
T cd02803 219 DFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVK-IPVIAV----GGIRDP 293 (327)
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCC-CCEEEe----CCCCCH
Confidence 1 235789999999999999999954321 12345667777775 777654 232111
Q ss_pred CCHHHHHhc-CCCEEeccchHHH
Q 012815 294 LNPLELEEL-GFKLVAYPLSLIG 315 (456)
Q Consensus 294 lt~~eL~el-Gv~~Vs~p~~ll~ 315 (456)
-..+++-+. |+..|.++-.++.
T Consensus 294 ~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 294 EVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHCCCCCeeeecHHHHh
Confidence 224555555 7888888766543
No 104
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.67 E-value=0.12 Score=51.40 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=57.8
Q ss_pred HHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012815 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (456)
Q Consensus 101 SArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGa 179 (456)
.|+.++++|+++|-+- |--.. .+..+ ..-..+.+.+.+++|.+.+++||++-+-.++ +.+++.+.++.++++||
T Consensus 116 ~a~~~~~~G~d~ielN~~cP~~---~~~~~-~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~-~~~~~~~~a~~l~~~Ga 190 (289)
T cd02810 116 LARKIERAGAKALELNLSCPNV---GGGRQ-LGQDPEAVANLLKAVKAAVDIPLLVKLSPYF-DLEDIVELAKAAERAGA 190 (289)
T ss_pred HHHHHHHhCCCEEEEEcCCCCC---CCCcc-cccCHHHHHHHHHHHHHccCCCEEEEeCCCC-CHHHHHHHHHHHHHcCC
Confidence 4677778899998876 21111 11122 1234556667788888888999999988775 35578888899999999
Q ss_pred cEEEeCCC
Q 012815 180 AGIILEDQ 187 (456)
Q Consensus 180 aGI~IEDq 187 (456)
++|.+-..
T Consensus 191 d~i~~~~~ 198 (289)
T cd02810 191 DGLTAINT 198 (289)
T ss_pred CEEEEEcc
Confidence 99998654
No 105
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.62 E-value=0.096 Score=52.91 Aligned_cols=172 Identities=16% Similarity=0.129 Sum_probs=98.2
Q ss_pred cccCCCCCCC---HHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCC----
Q 012815 125 LALPDTGFIS---YGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHT---- 196 (456)
Q Consensus 125 lG~PD~~~lt---~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~---- 196 (456)
.|++-.+.++ ++..++..+.+.+.. +.|+++-.=.+| +++...+.++.++++|+++|-|-=. |-|.
T Consensus 70 ~g~~n~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~-~~~~~~~~a~~~~~~gad~ielN~s-----CP~~~~~~ 143 (299)
T cd02940 70 IGFNNIELISEKPLEYWLKEIRELKKDFPDKILIASIMCEY-NKEDWTELAKLVEEAGADALELNFS-----CPHGMPER 143 (299)
T ss_pred ccccCCccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCC-CHHHHHHHHHHHHhcCCCEEEEECC-----CCCCCCCC
Confidence 3554444333 566666666665555 589888653222 6678889999999999999988554 3222
Q ss_pred -CCccc-cCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEecc-------------
Q 012815 197 -RGRKV-VSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA------------- 261 (456)
Q Consensus 197 -~gk~l-vp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~------------- 261 (456)
.|..+ ..++.+.+-+++++++. +.++.+--|-+ +++..+-+++..++|||.|.+-.
T Consensus 144 ~~G~~l~~~~~~~~~iv~~v~~~~---~~Pv~vKl~~~------~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~ 214 (299)
T cd02940 144 GMGAAVGQDPELVEEICRWVREAV---KIPVIAKLTPN------ITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGT 214 (299)
T ss_pred CCchhhccCHHHHHHHHHHHHHhc---CCCeEEECCCC------chhHHHHHHHHHHcCCCEEEEecccccccccccccC
Confidence 12222 24444444444444432 24566665533 34556778888999999987310
Q ss_pred --------------C-------CCHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 262 --------------L-------ASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 262 --------------~-------~s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
. .+.+.+.++.+.++ .+|+..| +|-...-+..+.-.+|...|-.+..++.
T Consensus 215 ~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~----GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 215 PPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGI----GGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred CccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEE----CCCCCHHHHHHHHHcCCChheEceeecc
Confidence 0 01456667777662 2666544 3432222334444577777666555444
No 106
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.62 E-value=0.096 Score=53.18 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=105.6
Q ss_pred cccccccCCCccccccccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchH-------HhhhhcccCC--
Q 012815 59 NRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFS-------ISAARLALPD-- 129 (456)
Q Consensus 59 ~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~a-------vSas~lG~PD-- 129 (456)
.++++|+---+..+ ..-+-|++..+.-+..++-.++|.-.+..+.+. .|.+.++.+- .++...|.|=
T Consensus 60 pRTSp~sFqG~G~e---eGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~-vDilQIgAr~~rntdLL~a~~~t~kpV~l 135 (281)
T PRK12457 60 NRSSIHSYRGVGLD---EGLRIFEEVKARFGVPVITDVHEVEQAAPVAEV-ADVLQVPAFLARQTDLVVAIAKTGKPVNI 135 (281)
T ss_pred CCCCCCCCCCCCHH---HHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhh-CeEEeeCchhhchHHHHHHHhccCCeEEe
Confidence 36788873223322 445567777777677888899999999999888 9999998632 2222334432
Q ss_pred --CCCCCHHHHHHHHHHHHh-------------------------------c--cCCcEEEeCCCC-----------CCC
Q 012815 130 --TGFISYGEMVDQGQLITQ-------------------------------A--VSIPVIGDGDNG-----------YGN 163 (456)
Q Consensus 130 --~~~lt~~Eml~~~r~I~r-------------------------------a--~~iPVIaD~DtG-----------YG~ 163 (456)
...++.+||+..++.|.. . +++|||+|.=++ -|.
T Consensus 136 KrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~ 215 (281)
T PRK12457 136 KKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGR 215 (281)
T ss_pred cCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCC
Confidence 345788999988877753 1 379999999885 355
Q ss_pred HHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHH
Q 012815 164 AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAA 214 (456)
Q Consensus 164 ~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA 214 (456)
-+-|...++..+.+||+|+.||=-..|.+ .-.+|...++.+++.+-++.+
T Consensus 216 re~v~~larAAvA~GaDGl~iEvHpdP~~-AlsDg~q~l~~~~~~~l~~~l 265 (281)
T PRK12457 216 RRQVLDLARAGMAVGLAGLFLEAHPDPDR-ARCDGPSALPLDQLEPFLSQV 265 (281)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCccc-cCCCcccccCHHHHHHHHHHH
Confidence 66788888999999999999997665542 345677777777654444433
No 107
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=96.53 E-value=0.12 Score=51.87 Aligned_cols=152 Identities=19% Similarity=0.225 Sum_probs=105.2
Q ss_pred cccccccCCCccccccccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHH-------hhhhcccCC--
Q 012815 59 NRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSI-------SAARLALPD-- 129 (456)
Q Consensus 59 ~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~av-------Sas~lG~PD-- 129 (456)
.+++||+---+.++ ..-+-|++..+.-+.-++-.++|.-.+..+.+. .|.+.++..-+ ++...|.|=
T Consensus 46 pRTsp~sFqG~G~e---eGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~-vDilQIgArn~rn~~LL~a~g~t~kpV~l 121 (258)
T TIGR01362 46 NRSSIHSFRGPGLE---EGLKILQKVKEEFGVPILTDVHESSQCEPVAEV-VDIIQIPAFLCRQTDLLVAAAKTGRIVNV 121 (258)
T ss_pred CCCCCCCCCCCCHH---HHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh-CcEEEeCchhcchHHHHHHHhccCCeEEe
Confidence 55788873222222 345567777766677788899999999999887 99999986322 211224332
Q ss_pred --CCCCCHHHHHHHHHHHHh-------------------------------ccCCcEEEeCCCC-----------CCCHH
Q 012815 130 --TGFISYGEMVDQGQLITQ-------------------------------AVSIPVIGDGDNG-----------YGNAM 165 (456)
Q Consensus 130 --~~~lt~~Eml~~~r~I~r-------------------------------a~~iPVIaD~DtG-----------YG~~~ 165 (456)
...++.+||+..++.|.. ..++|||+|.=++ -|..+
T Consensus 122 KrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k~~~~PVi~DpSHsvq~pg~~g~~s~G~r~ 201 (258)
T TIGR01362 122 KKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMRELGCPVIFDATHSVQQPGGLGGASGGLRE 201 (258)
T ss_pred cCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCCCCCCCCCcHH
Confidence 345889999988887753 1369999999886 45566
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHH
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~ 215 (456)
-|....+..+.+||+|+.||=-..|.+ ...+|...++.+++.+-++.++
T Consensus 202 ~v~~la~AAvA~GaDGl~iEvHpdP~~-AlsDg~q~l~~~~~~~ll~~l~ 250 (258)
T TIGR01362 202 FVPTLARAAVAVGIDGLFMETHPDPKN-AKSDGPNMLPLSELEGLLEKLL 250 (258)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCccc-cCCCccccCCHHHHHHHHHHHH
Confidence 788888889999999999997665543 3456777777776655444443
No 108
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.53 E-value=0.076 Score=52.13 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=99.9
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
-|+.+++.|++.+++....-+ ..+. ...++.++.+++.+++||+++. |..+. +.++++.+.|+.
T Consensus 35 ~a~~~~~~G~~~i~i~dl~~~--~~~~--------~~~~~~i~~i~~~~~ipv~~~G--Gi~s~----~~~~~~l~~Ga~ 98 (253)
T PRK02083 35 LAKRYNEEGADELVFLDITAS--SEGR--------DTMLDVVERVAEQVFIPLTVGG--GIRSV----EDARRLLRAGAD 98 (253)
T ss_pred HHHHHHHcCCCEEEEEeCCcc--cccC--------cchHHHHHHHHHhCCCCEEeeC--CCCCH----HHHHHHHHcCCC
Confidence 466778899999999864421 1111 1345677888888899999873 33343 344556668999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHH-H--hHhhC-------CCeEEEEecchhhcccHHHHHHHHHHhH
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-A--RKESG-------SDIVIVARTDSRQALSLEESLRRSRAFA 250 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~-A--r~~~G-------~dfvIiARTDA~~~~~ldeAI~RakAy~ 250 (456)
+|.| +... +.++ +.+.++....- . ....+ .++.|.-|.-... .. ...++-++.+.
T Consensus 99 ~Vii-gt~~-----------l~~p-~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~ 163 (253)
T PRK02083 99 KVSI-NSAA-----------VANP-ELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKP-TG-LDAVEWAKEVE 163 (253)
T ss_pred EEEE-ChhH-----------hhCc-HHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCcee-cC-CCHHHHHHHHH
Confidence 9988 3210 1122 23444432210 0 00000 0111222211110 01 13456677788
Q ss_pred hcCCCEEEeccCC--------CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHH---Hh-cCCCEEeccchHHHH
Q 012815 251 DAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLEL---EE-LGFKLVAYPLSLIGV 316 (456)
Q Consensus 251 eAGAD~Ifie~~~--------s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL---~e-lGv~~Vs~p~~ll~a 316 (456)
++|++.+.+..+. +.+.++++++.++ +|+.++ ||- .+.+++ .+ .|+.-|+.+..+..-
T Consensus 164 ~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~-ipvia~----GGv---~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 164 ELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVN-VPVIAS----GGA---GNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCC-CCEEEE----CCC---CCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 9999998885532 3578889888776 787654 342 244444 44 499999888776643
No 109
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.51 E-value=0.19 Score=49.38 Aligned_cols=174 Identities=15% Similarity=0.197 Sum_probs=104.8
Q ss_pred ChH-HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012815 98 DAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (456)
Q Consensus 98 Dal-SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~ 176 (456)
|+. .|+..++.|++-+++--+- ++ .|.+ .....++.|++.+++||.++ .|..+ .+-++++..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd--~~-~g~~--------~n~~~i~~i~~~~~~pv~vg--GGirs----~edv~~~l~ 95 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLD--AA-FGRG--------SNRELLAEVVGKLDVKVELS--GGIRD----DESLEAALA 95 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecc--cc-CCCC--------ccHHHHHHHHHHcCCCEEEc--CCCCC----HHHHHHHHH
Confidence 444 4566777899999987543 11 2433 23467788888889999876 34444 355567888
Q ss_pred hCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEE--EEecchh---h-cccHHHHHHHHHHhH
Q 012815 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI--VARTDSR---Q-ALSLEESLRRSRAFA 250 (456)
Q Consensus 177 AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvI--iARTDA~---~-~~~ldeAI~RakAy~ 250 (456)
+||.-+.+ +.. .+-+++ ++.++.... +..+++ -.|.... . .....+.++-++.+.
T Consensus 96 ~Ga~kvvi-Gs~-----------~l~~p~-l~~~i~~~~------~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~ 156 (241)
T PRK14024 96 TGCARVNI-GTA-----------ALENPE-WCARVIAEH------GDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLD 156 (241)
T ss_pred CCCCEEEE-Cch-----------HhCCHH-HHHHHHHHh------hhhEEEEEEEeccEeccCCeeecCccHHHHHHHHH
Confidence 99997766 221 123333 333332211 111111 1111000 0 001134567788899
Q ss_pred hcCCCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhc------CCCEEeccchHHH
Q 012815 251 DAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL------GFKLVAYPLSLIG 315 (456)
Q Consensus 251 eAGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~el------Gv~~Vs~p~~ll~ 315 (456)
++|++.+.++++ ++.+.++++++..+ +|+.+| ||- .+.+++.++ |+.-|+.+..++.
T Consensus 157 ~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~-ipvias----GGi---~s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 157 SAGCSRYVVTDVTKDGTLTGPNLELLREVCARTD-APVVAS----GGV---SSLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred hcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCC-CCEEEe----CCC---CCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 999999999876 34688899998876 787765 342 366666543 9999988775543
No 110
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.51 E-value=0.045 Score=54.66 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=100.9
Q ss_pred ccccCCCCCccceeecceeeeecccchh--hhhcccCCCCcccccccccCCCccccccccHHHHHHHHHhCCCceee-cc
Q 012815 19 LFHSNSRPSSFLGINNNTISFNKTNTNT--LLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQG-PA 95 (456)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pr~~~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv~-pg 95 (456)
+|-..-+++.+-+++|.+=-.+-+.+.. .+......-+|..+.-.--...+-.+ ....-+.-++|.+ .++.++ .+
T Consensus 53 ~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd-~~~tv~aa~~L~~-~Gf~vlpyc 130 (250)
T PRK00208 53 NLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPD-PIETLKAAEILVK-EGFVVLPYC 130 (250)
T ss_pred hHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcC-HHHHHHHHHHHHH-CCCEEEEEe
Confidence 3333344556667777655444333332 44455556667776332111111111 1122334445444 457788 68
Q ss_pred cCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012815 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (456)
Q Consensus 96 ayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~ 175 (456)
+=|...|+.++++|+++|..-|.-+. + | .+..+ .++ ++.|.+..++|||+|+ |.+.++++++ ..
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIG-s--g---~gi~~-~~~---i~~i~e~~~vpVIvea--GI~tpeda~~----Am 194 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIG-S--G---LGLLN-PYN---LRIIIEQADVPVIVDA--GIGTPSDAAQ----AM 194 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-C--C---CCCCC-HHH---HHHHHHhcCCeEEEeC--CCCCHHHHHH----HH
Confidence 88999999999999999954222221 1 1 22223 344 5555555689999994 7888877774 44
Q ss_pred HhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 176 ~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
+.|++||.+--... . --++..++++++.++++.+
T Consensus 195 elGAdgVlV~SAIt------k----a~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 195 ELGADAVLLNTAIA------V----AGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred HcCCCEEEEChHhh------C----CCCHHHHHHHHHHHHHHHH
Confidence 58999999855431 1 1135677778777777664
No 111
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=96.48 E-value=0.59 Score=48.70 Aligned_cols=215 Identities=16% Similarity=0.144 Sum_probs=113.9
Q ss_pred HHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEEeCCC----CCCCHHHHHHHHHHH
Q 012815 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDN----GYGNAMNVKRTVKGY 174 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIaD~Dt----GYG~~~nv~rtVk~l 174 (456)
-=|++++++|. ++.+++...+ +-| - ++.+..+.+.+.+ +.|+++-.=. || +++.+.+.++++
T Consensus 81 ~La~~a~~~G~-~~~~Gs~~~~-----~~~-----~-~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~-~~~~~~~~~~~~ 147 (352)
T PRK05437 81 KLAEAAEELGI-AMGVGSQRAA-----LKD-----P-ELADSFSVVRKVAPDGLLFANLGAVQLYGY-GVEEAQRAVEMI 147 (352)
T ss_pred HHHHHHHHcCC-CeEecccHhh-----ccC-----h-hhHHHHHHHHHHCCCceEEeecCccccCCC-CHHHHHHHHHhc
Confidence 44567778887 4444544321 211 1 2334445555555 7898875422 33 345566655443
Q ss_pred HHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCC
Q 012815 175 IKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGA 254 (456)
Q Consensus 175 ~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGA 254 (456)
++.+--+|+.- +..+....+. .+.+..++.|+++++.- +.++++-..-.. .. .+-++...++|+
T Consensus 148 -~adal~l~l~~---~qe~~~p~g~--~~f~~~le~i~~i~~~~---~vPVivK~~g~g---~s----~~~a~~l~~~Gv 211 (352)
T PRK05437 148 -EADALQIHLNP---LQELVQPEGD--RDFRGWLDNIAEIVSAL---PVPVIVKEVGFG---IS----KETAKRLADAGV 211 (352)
T ss_pred -CCCcEEEeCcc---chhhcCCCCc--ccHHHHHHHHHHHHHhh---CCCEEEEeCCCC---Cc----HHHHHHHHHcCC
Confidence 55555555521 0111111121 13344567777776654 245554432111 11 466788889999
Q ss_pred CEEEeccC---------------------------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEE
Q 012815 255 DVLFIDAL---------------------------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (456)
Q Consensus 255 D~Ifie~~---------------------------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~V 307 (456)
|.|.+.+. ++.+.+.++.+....+|+.+ .||-.......+.-.+|.+.|
T Consensus 212 d~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia----~GGI~~~~dv~k~l~~GAd~v 287 (352)
T PRK05437 212 KAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIA----SGGIRNGLDIAKALALGADAV 287 (352)
T ss_pred CEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEE----ECCCCCHHHHHHHHHcCCCEE
Confidence 99998552 22234444445433355543 244333355667777899999
Q ss_pred eccchHHHHHH----HHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHH
Q 012815 308 AYPLSLIGVSV----RAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEE 357 (456)
Q Consensus 308 s~p~~ll~aa~----~A~~~~l~~i~~g~~~~~~~~~~~~e~~~lvg~~~~~~~ 357 (456)
.++..++.++. .++.+.++.+.+. ++.+..++|.....++
T Consensus 288 ~ig~~~l~~~~~~g~~~v~~~i~~~~~e----------L~~~m~~~G~~~i~eL 331 (352)
T PRK05437 288 GMAGPFLKAALEGGEEAVIELIEQWIEE----------LKIAMFLTGAKNIAEL 331 (352)
T ss_pred EEhHHHHHHHHhccHHHHHHHHHHHHHH----------HHHHHHHhCCCCHHHh
Confidence 99999888753 3344455544432 3344445555554444
No 112
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.45 E-value=0.41 Score=48.39 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=98.1
Q ss_pred hHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012815 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (456)
Q Consensus 99 alSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG 178 (456)
..-|+.++++|...++.+ .. ..+++++... ...|+.+-.= +..++....+.++++.+.|
T Consensus 84 ~~la~aa~~~g~~~~~~~-~~------------~~~~~~i~~~-------~~~~~~~ql~-~~~~~~~~~~~i~~~~~~g 142 (299)
T cd02809 84 LATARAAAAAGIPFTLST-VS------------TTSLEEVAAA-------APGPRWFQLY-VPRDREITEDLLRRAEAAG 142 (299)
T ss_pred HHHHHHHHHcCCCEEecC-CC------------cCCHHHHHHh-------cCCCeEEEEe-ecCCHHHHHHHHHHHHHcC
Confidence 366778888887444432 11 1245554322 2256665541 1125667778888888999
Q ss_pred ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEE
Q 012815 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (456)
Q Consensus 179 aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~If 258 (456)
+.+|.|--.. -+.+.. ...+ .|+..+++. +..+++... .. .+.++...++|||.|.
T Consensus 143 ~~~i~l~~~~-----p~~~~~---~~~~---~i~~l~~~~---~~pvivK~v------~s----~~~a~~a~~~G~d~I~ 198 (299)
T cd02809 143 YKALVLTVDT-----PVLGRR---LTWD---DLAWLRSQW---KGPLILKGI------LT----PEDALRAVDAGADGIV 198 (299)
T ss_pred CCEEEEecCC-----CCCCCC---CCHH---HHHHHHHhc---CCCEEEeec------CC----HHHHHHHHHCCCCEEE
Confidence 9998885442 221111 1123 334343332 223333322 11 2447888899999999
Q ss_pred ecc---------CCCHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHH
Q 012815 259 IDA---------LASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVS 317 (456)
Q Consensus 259 ie~---------~~s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa 317 (456)
+.+ +++.+.+.++.+.++ .+|+..+ ||-....+..+.-.+|..-|.++..++.+.
T Consensus 199 v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~----GGI~~~~d~~kal~lGAd~V~ig~~~l~~~ 263 (299)
T cd02809 199 VSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLD----GGIRRGTDVLKALALGADAVLIGRPFLYGL 263 (299)
T ss_pred EcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEe----CCCCCHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 843 356677788877764 3666543 343333344444569999999999877664
No 113
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=96.43 E-value=0.48 Score=48.90 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=98.5
Q ss_pred hHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHh-ccCCcEEEeCCC---CCCCHHHHHHHHHHH
Q 012815 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ-AVSIPVIGDGDN---GYGNAMNVKRTVKGY 174 (456)
Q Consensus 99 alSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~r-a~~iPVIaD~Dt---GYG~~~nv~rtVk~l 174 (456)
.-=|+.++++|... +++|... ++.|-. ....-+.+.+ ..++|+++-.-. ..++...+.+.++++
T Consensus 73 ~~La~~a~~~g~~~-~~Gs~~~-----~~~~~~------~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i 140 (333)
T TIGR02151 73 RNLARAARELGIPM-GVGSQRA-----ALKDPE------TADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMI 140 (333)
T ss_pred HHHHHHHHHcCCCe-EEcCchh-----hccChh------hHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHh
Confidence 34456677778744 3444221 233321 2222233444 568999985522 112244566666544
Q ss_pred HHhCccEEEeCC-CCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcC
Q 012815 175 IKAGFAGIILED-QVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (456)
Q Consensus 175 ~~AGaaGI~IED-q~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAG 253 (456)
++.+-.+|+.- |......|+. +.+...+.|+++++.. +.++++--.- . + ...+-++...++|
T Consensus 141 -~adal~i~ln~~q~~~~p~g~~------~f~~~le~i~~i~~~~---~vPVivK~~g--~---g--~~~~~a~~L~~aG 203 (333)
T TIGR02151 141 -EADALAIHLNVLQELVQPEGDR------NFKGWLEKIAEICSQL---SVPVIVKEVG--F---G--ISKEVAKLLADAG 203 (333)
T ss_pred -cCCCEEEcCcccccccCCCCCc------CHHHHHHHHHHHHHhc---CCCEEEEecC--C---C--CCHHHHHHHHHcC
Confidence 67777777721 2111111221 2344557777776654 2344443211 1 1 1257788999999
Q ss_pred CCEEEeccCC---------------------------CHHHHHHHHH-hCCCCceeeeeeccCCCCCCCCHHHHHhcCCC
Q 012815 254 ADVLFIDALA---------------------------SKEEMKAFCE-ISPLVPKMANMLEGGGKTPILNPLELEELGFK 305 (456)
Q Consensus 254 AD~Ifie~~~---------------------------s~eei~~i~~-~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~ 305 (456)
+|.|.+.+-. ..+.+.++.+ ..+ +|+.++ ||-.........-.+|..
T Consensus 204 vd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~-ipVIas----GGI~~~~di~kaLalGAd 278 (333)
T TIGR02151 204 VSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPD-APIIAS----GGLRTGLDVAKAIALGAD 278 (333)
T ss_pred CCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCC-CeEEEE----CCCCCHHHHHHHHHhCCC
Confidence 9999997631 1122333333 122 454432 443333455666669999
Q ss_pred EEeccchHHHHHH
Q 012815 306 LVAYPLSLIGVSV 318 (456)
Q Consensus 306 ~Vs~p~~ll~aa~ 318 (456)
.|.++..++.+++
T Consensus 279 ~V~igr~~L~~~~ 291 (333)
T TIGR02151 279 AVGMARPFLKAAL 291 (333)
T ss_pred eehhhHHHHHHHH
Confidence 9999999888776
No 114
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.42 E-value=0.14 Score=50.50 Aligned_cols=176 Identities=17% Similarity=0.194 Sum_probs=102.2
Q ss_pred Ch-HHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012815 98 DA-LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (456)
Q Consensus 98 Da-lSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~ 176 (456)
|+ -.|+.+++.|++.+++.-..-+ + . .-...++.++.|++.+++||+++. |..+. +.++++..
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~----~--~----~~~~n~~~i~~i~~~~~~pv~~~G--Gi~s~----~d~~~~~~ 94 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS----S--E----GRTTMIDVVERTAETVFIPLTVGG--GIKSI----EDVDKLLR 94 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc----c--c----cChhhHHHHHHHHHhcCCCEEEEC--CCCCH----HHHHHHHH
Confidence 44 4577788899999999853311 1 0 111346677888888899999872 33343 33456677
Q ss_pred hCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCe------------------EEEEecchhhccc
Q 012815 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI------------------VIVARTDSRQALS 238 (456)
Q Consensus 177 AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~df------------------vIiARTDA~~~~~ 238 (456)
+||.++.+ ... .+.++ ++++++.... |.+= .|.-|.--. ..
T Consensus 95 ~Ga~~viv-gt~-----------~~~~p-~~~~~~~~~~------~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~--~~ 153 (254)
T TIGR00735 95 AGADKVSI-NTA-----------AVKNP-ELIYELADRF------GSQCIVVAIDAKRVYVNSYCWYEVYIYGGRE--ST 153 (254)
T ss_pred cCCCEEEE-Chh-----------HhhCh-HHHHHHHHHc------CCCCEEEEEEeccCCCCCCccEEEEEeCCcc--cC
Confidence 89999977 221 11222 2333332211 1111 122121111 11
Q ss_pred HHHHHHHHHHhHhcCCCEEEeccCC--------CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcC-CCEEec
Q 012815 239 LEESLRRSRAFADAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLVAY 309 (456)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~~~--------s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elG-v~~Vs~ 309 (456)
-.+.++-++.+.++|+|.|.+..+. +.+.++++.+.++ +|+.++ +|-...-...++.+.| +.-|+.
T Consensus 154 ~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~-ipvia~----GGi~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 154 GLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVK-IPVIAS----GGAGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCC-CCEEEe----CCCCCHHHHHHHHHcCCcceeeE
Confidence 2345778888999999999886543 3567888888775 677654 3432212345666677 888877
Q ss_pred cchHHH
Q 012815 310 PLSLIG 315 (456)
Q Consensus 310 p~~ll~ 315 (456)
+..+..
T Consensus 229 g~a~~~ 234 (254)
T TIGR00735 229 ASVFHY 234 (254)
T ss_pred hHHHhC
Confidence 665443
No 115
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.41 E-value=1.6 Score=45.85 Aligned_cols=225 Identities=15% Similarity=0.149 Sum_probs=143.5
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC-CcE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPV 153 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~-iPV 153 (456)
+-|....+.+-.+-+.|+||.-+++.+ |+.+.+.|.--+-+.. .+ ..++.+...++..++... +||
T Consensus 8 ~lL~~A~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~----~~-----~g~~~~~~~~~~~a~~~~~VPV 78 (347)
T PRK09196 8 QLLDHAAEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGAR----KY-----AGEPFLRHLILAAVEEYPHIPV 78 (347)
T ss_pred HHHHHHHHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHh----hh-----CCHHHHHHHHHHHHHhCCCCcE
Confidence 445555566656889999999998765 5568888886643321 12 234556667777777664 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEEE
Q 012815 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVA 229 (456)
Q Consensus 154 IaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIiA 229 (456)
.+=.|.|. +. +.+++.+++|...|.|.....| +++.-.|.||-+++-+.+++.++..|. ++=-++
T Consensus 79 alHLDHg~-~~----e~i~~ai~~GftSVMiDgS~l~------~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vg 147 (347)
T PRK09196 79 VMHQDHGN-SP----ATCQRAIQLGFTSVMMDGSLKA------DGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLG 147 (347)
T ss_pred EEECCCCC-CH----HHHHHHHHcCCCEEEecCCCCc------ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecc
Confidence 99999994 43 3466778899999999543221 233456889999888888887765431 111111
Q ss_pred ec--------chhhccc---HH---HHHHHHHHhH-hcCCCEEEe-----ccC-----------CCHHHHHHHHHhCCCC
Q 012815 230 RT--------DSRQALS---LE---ESLRRSRAFA-DAGADVLFI-----DAL-----------ASKEEMKAFCEISPLV 278 (456)
Q Consensus 230 RT--------DA~~~~~---ld---eAI~RakAy~-eAGAD~Ifi-----e~~-----------~s~eei~~i~~~v~~v 278 (456)
-. |...... .+ ---+.|+.|. +.|+|++=| ++. -+.+.+++|.+.++.+
T Consensus 148 g~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~v 227 (347)
T PRK09196 148 SLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNT 227 (347)
T ss_pred CccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCC
Confidence 11 1000000 00 0134566677 479998753 332 1345788888888546
Q ss_pred ceeeeeeccCCCCC------------------CCCHHH---HHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 279 PKMANMLEGGGKTP------------------ILNPLE---LEELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 279 P~~~N~~~~~g~tp------------------~lt~~e---L~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
|+ +++++..+| .++.++ .-++|++-|=+...+..+..+++++.+.
T Consensus 228 PL---VLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~ 293 (347)
T PRK09196 228 HL---VMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLA 293 (347)
T ss_pred CE---EEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHH
Confidence 75 355533332 124444 4579999999999999999999998864
No 116
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.36 E-value=0.1 Score=53.52 Aligned_cols=140 Identities=19% Similarity=0.194 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhCccEEEeCCCC--------CCCCc---cCCCCcccc-CHHHHHHHHHHHHHHhHhhCCCeEEEEecch
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQV--------SPKGC---GHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDS 233 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~--------~pK~C---GH~~gk~lv-p~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA 233 (456)
...+.+++..++|++||.|--.- .|..| ..-+| .+. ..+...+.|++++++ .|+||.|..|.-.
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGg-sl~nr~rf~~eiv~aIR~~---vG~d~~v~vri~~ 230 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGG-SLENRMRFLLEVVDAVRAV---WPEDKPLFVRISA 230 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCC-CHHHHhHHHHHHHHHHHHH---cCCCceEEEEEcc
Confidence 34556678888999999996431 13221 11122 222 223334444444443 4778988888543
Q ss_pred h----hcccHHHHHHHHHHhHhcCCCEEEecc----------C---CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCH
Q 012815 234 R----QALSLEESLRRSRAFADAGADVLFIDA----------L---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNP 296 (456)
Q Consensus 234 ~----~~~~ldeAI~RakAy~eAGAD~Ifie~----------~---~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~ 296 (456)
. ....++++++-++++.++|.|.|=+.. . ...+.++++.+.++ +|++.+ ++-+..-..
T Consensus 231 ~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~----G~i~t~~~a 305 (336)
T cd02932 231 TDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAG-IPVIAV----GLITDPEQA 305 (336)
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCC-CCEEEe----CCCCCHHHH
Confidence 2 234589999999999999999876421 1 12356677777776 787654 221111124
Q ss_pred HHHHhcC-CCEEeccchHH
Q 012815 297 LELEELG-FKLVAYPLSLI 314 (456)
Q Consensus 297 ~eL~elG-v~~Vs~p~~ll 314 (456)
+++-+.| +..|.++-.++
T Consensus 306 ~~~l~~g~aD~V~~gR~~i 324 (336)
T cd02932 306 EAILESGRADLVALGRELL 324 (336)
T ss_pred HHHHHcCCCCeehhhHHHH
Confidence 5555556 77777655443
No 117
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=96.35 E-value=0.27 Score=48.31 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=106.9
Q ss_pred ecccCChHHHHHHHHhCCcEEEecchHH-----hhh----hcccCCCCCCCHHHHHH-HHHHHHhccCCcEEEeCCCCCC
Q 012815 93 GPACFDALSAKLVEKSGFSFCFTSGFSI-----SAA----RLALPDTGFISYGEMVD-QGQLITQAVSIPVIGDGDNGYG 162 (456)
Q Consensus 93 ~pgayDalSArl~e~aGfdAI~vSG~av-----Sas----~lG~PD~~~lt~~Eml~-~~r~I~ra~~iPVIaD~DtGYG 162 (456)
|-|.-|+.-++.+.+. |-+..++|++. .++ .-|+.-...-...+.+. ..+.+ +..+.|+++-. +|
T Consensus 7 Mag~td~~f~~~~~~~-~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~-~~~~~p~~vqi---~g 81 (233)
T cd02911 7 MAGITDGDFCRKRADH-AGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKAL-KDSNVLVGVNV---RS 81 (233)
T ss_pred cCCCcCHHHHHhhCcc-CCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHh-hccCCeEEEEe---cC
Confidence 5588888888844332 44455555442 111 12332211111222222 22322 33467888876 34
Q ss_pred -CHHHHHHHHHHHHHhCccEEEeCCCC-CCCCccCCCCccc-cCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccH
Q 012815 163 -NAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKV-VSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (456)
Q Consensus 163 -~~~nv~rtVk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~l-vp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~l 239 (456)
+++...+.++.+.+ ++++|.|-=.. .+|.|.+..|..| -.++...+-+++++++ +.++.+--|... .
T Consensus 82 ~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~----~~pVsvKir~g~----~- 151 (233)
T cd02911 82 SSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET----GVPVSVKIRAGV----D- 151 (233)
T ss_pred CCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc----CCCEEEEEcCCc----C-
Confidence 57778888888876 56898887663 3445554445444 3455555555555432 234444444321 1
Q ss_pred HHHHHHHHHhHhcCCCEEEeccCC-----CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 240 EESLRRSRAFADAGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~~-----s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
++.++-++.+.++|+|.|-+.... +.+.++++. .+ +|+..| ++-...-+..++-+.|...|.++-
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~~-ipVIgn----GgI~s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--TE-LFIIGN----NSVTTIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--CC-CEEEEE----CCcCCHHHHHHHHHcCCCEEEEcC
Confidence 456788899999999988765532 334455543 33 777765 332211223555557777777654
No 118
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=96.35 E-value=0.062 Score=56.29 Aligned_cols=110 Identities=19% Similarity=0.178 Sum_probs=77.1
Q ss_pred HHHHHHhccCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHh
Q 012815 141 QGQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDAR 218 (456)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtG-YG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar 218 (456)
-+|++....+.|+++=+=.- .| ++.+..+.+..+++.|+++|+. |. .++..+..|.+|-+..++.+++..
T Consensus 120 g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikd-de-------~~ge~~~~~~eER~~~v~~av~~a 191 (367)
T cd08205 120 GLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKD-DE-------LLADQPYAPFEERVRACMEAVRRA 191 (367)
T ss_pred hHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeec-cc-------cccCcccCCHHHHHHHHHHHHHHH
Confidence 35677777778876542221 13 6788999999999999999986 32 344566788888777777777554
Q ss_pred H-hhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC
Q 012815 219 K-ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL 262 (456)
Q Consensus 219 ~-~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~ 262 (456)
. +.|...++.+-..+. .+|+++|++..+++|||++++--+
T Consensus 192 ~~~TG~~~~y~~nit~~----~~e~i~~a~~a~~~Gad~vmv~~~ 232 (367)
T cd08205 192 NEETGRKTLYAPNITGD----PDELRRRADRAVEAGANALLINPN 232 (367)
T ss_pred HHhhCCcceEEEEcCCC----HHHHHHHHHHHHHcCCCEEEEecc
Confidence 4 344434444443322 389999999999999999998654
No 119
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.33 E-value=0.065 Score=53.54 Aligned_cols=172 Identities=17% Similarity=0.207 Sum_probs=103.2
Q ss_pred cccCCCCCccceeecceeeeecccchh--hhhcccCCCCcccccccccCCCccccccccHHHHHHHHHhCCCceee-ccc
Q 012815 20 FHSNSRPSSFLGINNNTISFNKTNTNT--LLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQG-PAC 96 (456)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pr~~~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv~-pga 96 (456)
|-..-+++.+-+++|.+=-.+-+.+.. .+......-+|-.+.-.--...+-.+- ...-+.-++|.+ .++.++ .++
T Consensus 54 ~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~-~~tv~aa~~L~~-~Gf~vlpyc~ 131 (248)
T cd04728 54 FLDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDP-IETLKAAEILVK-EGFTVLPYCT 131 (248)
T ss_pred HHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCH-HHHHHHHHHHHH-CCCEEEEEeC
Confidence 333345567777788765555444433 555556677787773332112221111 112233445444 457777 688
Q ss_pred CChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012815 97 FDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (456)
Q Consensus 97 yDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~ 176 (456)
=|...|+.++++|+++|..-|.-+. + | .+..+ .+++ +.|.+..++|||+| .|.+.++++++ ..+
T Consensus 132 dd~~~ar~l~~~G~~~vmPlg~pIG-s--g---~Gi~~-~~~I---~~I~e~~~vpVI~e--gGI~tpeda~~----Ame 195 (248)
T cd04728 132 DDPVLAKRLEDAGCAAVMPLGSPIG-S--G---QGLLN-PYNL---RIIIERADVPVIVD--AGIGTPSDAAQ----AME 195 (248)
T ss_pred CCHHHHHHHHHcCCCEeCCCCcCCC-C--C---CCCCC-HHHH---HHHHHhCCCcEEEe--CCCCCHHHHHH----HHH
Confidence 8999999999999999955232221 1 1 23223 4444 45666578999998 57778877764 445
Q ss_pred hCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 177 AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
.|++||.+--.. +. --++..++++++.++++.+
T Consensus 196 lGAdgVlV~SAI------t~----a~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 196 LGADAVLLNTAI------AK----AKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred cCCCEEEEChHh------cC----CCCHHHHHHHHHHHHHHHH
Confidence 899999985543 11 1135677888887777665
No 120
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.31 E-value=0.096 Score=52.93 Aligned_cols=142 Identities=18% Similarity=0.181 Sum_probs=84.7
Q ss_pred HHHHHHHhCCcEEEec-chHHhhhhcccCCCC---CCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012815 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTG---FISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (456)
Q Consensus 101 SArl~e~aGfdAI~vS-G~avSas~lG~PD~~---~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~ 176 (456)
.|+.+++.|++++=+- |.-.. -+....+ .-..+.+.+.++++.+.+++||++=+--.+ .++.+.++.+.+
T Consensus 118 ~a~~~~~~gad~ielN~sCP~~---~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~---~~~~~~a~~~~~ 191 (299)
T cd02940 118 LAKLVEEAGADALELNFSCPHG---MPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNI---TDIREIARAAKE 191 (299)
T ss_pred HHHHHHhcCCCEEEEECCCCCC---CCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCc---hhHHHHHHHHHH
Confidence 4566777788877664 21111 0111111 124556667777887788999999886433 356777788899
Q ss_pred hCccEEEeCCCCC-----------CC-------CccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhccc
Q 012815 177 AGFAGIILEDQVS-----------PK-------GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALS 238 (456)
Q Consensus 177 AGaaGI~IEDq~~-----------pK-------~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ 238 (456)
+||+||.+=.... |. ..|...|+.+.|.. .+.|..++++. ++++-|++-.+-...
T Consensus 192 ~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~--l~~v~~~~~~~---~~~ipIig~GGI~~~-- 264 (299)
T cd02940 192 GGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIA--LRAVSQIARAP---EPGLPISGIGGIESW-- 264 (299)
T ss_pred cCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHH--HHHHHHHHHhc---CCCCcEEEECCCCCH--
Confidence 9999998532211 11 12334455555542 33444443332 246888887766543
Q ss_pred HHHHHHHHHHhHhcCCCEEEec
Q 012815 239 LEESLRRSRAFADAGADVLFID 260 (456)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie 260 (456)
+.+..|..+|||+|.+-
T Consensus 265 -----~da~~~l~aGA~~V~i~ 281 (299)
T cd02940 265 -----EDAAEFLLLGASVVQVC 281 (299)
T ss_pred -----HHHHHHHHcCCChheEc
Confidence 44555677999999874
No 121
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=96.30 E-value=0.22 Score=52.30 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=99.8
Q ss_pred HHHHHHhccCCcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHh-
Q 012815 141 QGQLITQAVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDAR- 218 (456)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtGYG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar- 218 (456)
-+|++....+-||+.=+=---| ++.+..+.+.++...|++.|+. |. +.+.++..|.+|-+..+..+++..
T Consensus 116 g~R~~lgv~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKd-De-------~l~~~~~~p~~eRv~~v~~av~~a~ 187 (364)
T cd08210 116 GLRALLGIPERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKD-DH-------GLADQPFAPFEERVKACQEAVAEAN 187 (364)
T ss_pred HHHHHhCCCCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeec-Cc-------cccCccCCCHHHHHHHHHHHHHHHH
Confidence 3566777778888765533335 6788999999999999999975 43 234566778877777776666544
Q ss_pred HhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCC-HHHHHHHHHhCCCCceeeeeeccCC---CCC-C
Q 012815 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEISPLVPKMANMLEGGG---KTP-I 293 (456)
Q Consensus 219 ~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~~v~~vP~~~N~~~~~g---~tp-~ 293 (456)
++.|......+-.-+ ..+|+++|++...++||+++++.-+.. ..-++.+++....+|+..- -...| ..| .
T Consensus 188 ~eTG~~~~y~~Nita----~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aH-ra~~ga~~~~~~~ 262 (364)
T cd08210 188 AETGGRTLYAPNVTG----PPTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAH-PAFAGAFVSSGDG 262 (364)
T ss_pred hhcCCcceEEEecCC----CHHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEc-cccccccccCCCc
Confidence 344443344333322 246999999999999999999876543 3455666665331343321 00001 111 1
Q ss_pred CC----HHHHHh-cCCCEEeccch
Q 012815 294 LN----PLELEE-LGFKLVAYPLS 312 (456)
Q Consensus 294 lt----~~eL~e-lGv~~Vs~p~~ 312 (456)
++ ...|.+ .|+..++|++.
T Consensus 263 is~~~~~~kl~RlaGad~~~~~~~ 286 (364)
T cd08210 263 ISHALLFGTLFRLAGADAVIFPNY 286 (364)
T ss_pred ccHHHHHHHHHHHhCCCEEEeCCC
Confidence 22 344444 88888888776
No 122
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.27 E-value=0.087 Score=52.95 Aligned_cols=154 Identities=15% Similarity=0.101 Sum_probs=87.3
Q ss_pred HHHHHHHhC-CcEEEecchHHhhhhcc-cCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012815 101 SAKLVEKSG-FSFCFTSGFSISAARLA-LPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (456)
Q Consensus 101 SArl~e~aG-fdAI~vSG~avSas~lG-~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG 178 (456)
.|+.++++| ||+|=+--.+-. ...| +.. .-..+.+.+.++.|.+.+++||++-+-.. ..++.+.++.++++|
T Consensus 109 ~a~~~~~aG~~D~iElN~~cP~-~~~gg~~~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---~~~~~~~a~~l~~~G 182 (301)
T PRK07259 109 VAEKLSKAPNVDAIELNISCPN-VKHGGMAF--GTDPELAYEVVKAVKEVVKVPVIVKLTPN---VTDIVEIAKAAEEAG 182 (301)
T ss_pred HHHHHhccCCcCEEEEECCCCC-CCCCcccc--ccCHHHHHHHHHHHHHhcCCCEEEEcCCC---chhHHHHHHHHHHcC
Confidence 466777888 999976411111 1122 211 12456677778888888899999988532 346777888999999
Q ss_pred ccEEEeCCCCC----------C---CCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHH
Q 012815 179 FAGIILEDQVS----------P---KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (456)
Q Consensus 179 aaGI~IEDq~~----------p---K~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~R 245 (456)
++||.+-.... | ..+|...|..+.|. ..+.++.++++. +.+++-+++-.. -+.
T Consensus 183 ~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~--~l~~v~~i~~~~---~ipvi~~GGI~~---------~~d 248 (301)
T PRK07259 183 ADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPI--ALRMVYQVYQAV---DIPIIGMGGISS---------AED 248 (301)
T ss_pred CCEEEEEccccccccccccCceeecCCcCccCCcCcccc--cHHHHHHHHHhC---CCCEEEECCCCC---------HHH
Confidence 99998743210 1 01233334444443 233333333322 234444444322 144
Q ss_pred HHHhHhcCCCEEEecc--CCCHHHHHHHHHh
Q 012815 246 SRAFADAGADVLFIDA--LASKEEMKAFCEI 274 (456)
Q Consensus 246 akAy~eAGAD~Ifie~--~~s~eei~~i~~~ 274 (456)
+..+.++|||+|.+-. +.+.+.+.++.+.
T Consensus 249 a~~~l~aGAd~V~igr~ll~~P~~~~~i~~~ 279 (301)
T PRK07259 249 AIEFIMAGASAVQVGTANFYDPYAFPKIIEG 279 (301)
T ss_pred HHHHHHcCCCceeEcHHHhcCcHHHHHHHHH
Confidence 5666679999998743 2344555555554
No 123
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=96.26 E-value=1.9 Score=45.28 Aligned_cols=225 Identities=12% Similarity=0.141 Sum_probs=143.6
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC-CcE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPV 153 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~-iPV 153 (456)
+.|+...+.+-.+-+.|+|+.-+++.+ |+.+.+.|...+-+.. . ...++.+...++.+++..+ +||
T Consensus 6 ~iL~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~----~-----~~g~~~~~~~~~~~ae~~~~VPV 76 (347)
T TIGR01521 6 QLLDHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGAR----S-----YAGAPFLRHLILAAIEEYPHIPV 76 (347)
T ss_pred HHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchh----h-----hCCHHHHHHHHHHHHHhCCCCcE
Confidence 345555556656889999999998865 5568888886643321 1 1235667777888887775 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEEE
Q 012815 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVA 229 (456)
Q Consensus 154 IaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIiA 229 (456)
.+=.|.|. + .+.+++.+++|...|.|.....| +.+.-.|.+|-+++-+.+++-++..|. ++=.++
T Consensus 77 alHLDHg~-~----~e~i~~Ai~~GFtSVMiDgS~l~------~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~ig 145 (347)
T TIGR01521 77 VMHQDHGN-S----PATCQRAIQLGFTSVMMDGSLRE------DAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLG 145 (347)
T ss_pred EEECCCCC-C----HHHHHHHHHcCCCEEeecCcCCc------ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecc
Confidence 99999994 4 34566778899999999443211 122346889999988888887764331 111122
Q ss_pred ec--------chhhccc---HHH---HHHHHHHhHh-cCCCEEEe-----ccC------C-----CHHHHHHHHHhCCCC
Q 012815 230 RT--------DSRQALS---LEE---SLRRSRAFAD-AGADVLFI-----DAL------A-----SKEEMKAFCEISPLV 278 (456)
Q Consensus 230 RT--------DA~~~~~---lde---AI~RakAy~e-AGAD~Ifi-----e~~------~-----s~eei~~i~~~v~~v 278 (456)
-. |...... .++ --+.|+.|.+ .|+|++-+ +|+ + +.+.+++|.+.++.+
T Consensus 146 g~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~v 225 (347)
T TIGR01521 146 SLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDT 225 (347)
T ss_pred cccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCC
Confidence 11 1100000 000 1255666774 69998764 332 1 345668888887436
Q ss_pred ceeeeeeccCCCCC------------------CCCHHHH---HhcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 279 PKMANMLEGGGKTP------------------ILNPLEL---EELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 279 P~~~N~~~~~g~tp------------------~lt~~eL---~elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
|+ +++++..+| .++.+++ -++|++-|=+...+..+.++++++.+.
T Consensus 226 PL---VLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~ 291 (347)
T TIGR01521 226 HL---VMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAA 291 (347)
T ss_pred CE---EEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHH
Confidence 75 355543334 2334544 569999999999999999999988864
No 124
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.26 E-value=1.3 Score=46.25 Aligned_cols=228 Identities=11% Similarity=0.057 Sum_probs=143.2
Q ss_pred HHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecch-HHhhhhcc------cCCCCC-CCHHHHHHHHHHHHh
Q 012815 80 SLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGF-SISAARLA------LPDTGF-ISYGEMVDQGQLITQ 147 (456)
Q Consensus 80 ~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~-avSas~lG------~PD~~~-lt~~Eml~~~r~I~r 147 (456)
-|....+.+--+.+.|||+.-+++.+ |+.+.+.|...+- +.. ...| .||+.. +.+..+...++..++
T Consensus 4 ll~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 82 (340)
T cd00453 4 VFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGAS-FIAGKGVKSDVPQGAAILGAISGAHHVHQMAE 82 (340)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHH-HhCCCcccccccchhhhhhHHHHHHHHHHHHH
Confidence 45555566666889999999998544 5668898887654 322 2334 356543 346677888888998
Q ss_pred ccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC-----------ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHH
Q 012815 148 AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG-----------FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD 216 (456)
Q Consensus 148 a~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG-----------aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~ 216 (456)
..++||.+=.|.|.-.. .+.+++.+++| ...|.|... | .|.||-++.-+.+++
T Consensus 83 ~~~VPV~lHLDH~~~~~---~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS-------~------l~~eeNi~~T~~vve 146 (340)
T cd00453 83 HYGVPVILHTDHCAKKL---LPWIDGLLDAGEKHFAATGKPLFSSHMIDLS-------E------ESLQENIEICSKYLE 146 (340)
T ss_pred HCCCCEEEEcCCCCCCC---HHHHHHHHHcCCccccccCCCCceeEEecCC-------C------CCHHHHHHHHHHHHH
Confidence 89999999999995211 46678889999 888888432 2 467888888777777
Q ss_pred HhHhhCC----CeEEEEec-chhhcccHH-H----HHHHHHHhH-hcC----CCEEEe-----ccC-------CCHHHHH
Q 012815 217 ARKESGS----DIVIVART-DSRQALSLE-E----SLRRSRAFA-DAG----ADVLFI-----DAL-------ASKEEMK 269 (456)
Q Consensus 217 Ar~~~G~----dfvIiART-DA~~~~~ld-e----AI~RakAy~-eAG----AD~Ifi-----e~~-------~s~eei~ 269 (456)
.++..|. ++=.++-. |.......+ + --+.+..|. +.| +|++=+ +|+ -+.+.++
T Consensus 147 ~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~ 226 (340)
T cd00453 147 RMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILR 226 (340)
T ss_pred HHHHcCCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHH
Confidence 6654331 11112111 110000000 0 134455565 578 786643 332 1456778
Q ss_pred HHHHhCC--------CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 012815 270 AFCEISP--------LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (456)
Q Consensus 270 ~i~~~v~--------~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~ 327 (456)
++.+.++ .+|+ +++++..+|.-..++.-+.|++-|=+...+..+.+.++++.+.+
T Consensus 227 ~i~~~~~~~~gl~~~~~pL---VlHGgSG~~~e~~~~ai~~Gi~KiNi~Te~~~A~~~~~~~~~~~ 289 (340)
T cd00453 227 DSQEYVSKKHNLPHNSLNF---VFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKA 289 (340)
T ss_pred HHHHHHHhhcccCCCCCce---EEeCCCCCCHHHHHHHHHcCCeEEEcccHHHHHHHHHHHHHHHh
Confidence 8877762 2554 34543333322234445799999999999999999999988753
No 125
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.18 E-value=0.23 Score=50.67 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=106.7
Q ss_pred cccccccCCCccccccccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhh-------hhcccC---
Q 012815 59 NRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLALP--- 128 (456)
Q Consensus 59 ~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSa-------s~lG~P--- 128 (456)
.++++|+=--..++ ..-+-|++..+.-+.-++-.++|.-.+..+.+. .|.++++..-+=. ...|.|
T Consensus 60 pRTSp~sFrG~G~e---eGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~-~DilQIgAr~~rqtdLL~a~~~tgkpV~l 135 (290)
T PLN03033 60 NRTSSKSFRGPGMA---EGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINI 135 (290)
T ss_pred CCCCCCCCCCCCHH---HHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh-CcEEeeCcHHHHHHHHHHHHHccCCeEEe
Confidence 55678873223322 445667777776677888899999999999888 6999998654322 122433
Q ss_pred -CCCCCCHHHHHHHHHHHHh-------------------------------ccCCcEEEeCCCC----------------
Q 012815 129 -DTGFISYGEMVDQGQLITQ-------------------------------AVSIPVIGDGDNG---------------- 160 (456)
Q Consensus 129 -D~~~lt~~Eml~~~r~I~r-------------------------------a~~iPVIaD~DtG---------------- 160 (456)
-....+.+||+..++.|.. .+++|||+|.=++
T Consensus 136 KkGq~~t~~e~~~aaeki~~~GN~~viLcERG~tFgy~~lv~D~r~ip~mk~~~lPVI~DpSHsvQ~pg~~~~~~~g~~s 215 (290)
T PLN03033 136 KKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGKKLDGGGVAS 215 (290)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCcccccccCCCC
Confidence 2346889999998887753 2579999999884
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHH
Q 012815 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD 216 (456)
Q Consensus 161 YG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~ 216 (456)
-|.-+-|....+..+.+|++|+.||=-..|.+ .-.+|...++.+++..-++.++.
T Consensus 216 ~G~Re~V~~larAAvA~GaDGlfiEvHpdP~~-AlsDg~q~l~~~~l~~ll~~l~~ 270 (290)
T PLN03033 216 GGLRELIPCIARTAVAVGVDGIFMEVHDDPLS-APVDGPTQWPLRHLEELLEELIA 270 (290)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEecCCccc-cCCCcccCcCHHHHHHHHHHHHH
Confidence 24456788888999999999999997665542 34467777777766555544443
No 126
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=96.14 E-value=0.87 Score=45.96 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=64.6
Q ss_pred HHHHHHhCCCcee--ecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeC
Q 012815 80 SLRQILELPGVHQ--GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (456)
Q Consensus 80 ~Lr~ll~~~~~lv--~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~ 157 (456)
.|+++++.+++.+ .....++..+.++..+|||.|++=- . + +.++++++...++.+. ..+++.+|=.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~-E-----H-----g~~~~~~l~~~i~a~~-~~g~~~lVRv 75 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDG-E-----H-----APNTIQDLYHQLQAIA-PYASQPVIRP 75 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEcc-c-----c-----CCCCHHHHHHHHHHHH-hcCCCeEEEC
Confidence 5899999888753 3466678899999999999999752 1 2 2567788877777765 4566666666
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012815 158 DNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (456)
Q Consensus 158 DtGYG~~~nv~rtVk~l~~AGaaGI~IE 185 (456)
+.+ + ...+++..++||.||.+=
T Consensus 76 p~~--~----~~~i~r~LD~GA~GIivP 97 (267)
T PRK10128 76 VEG--S----KPLIKQVLDIGAQTLLIP 97 (267)
T ss_pred CCC--C----HHHHHHHhCCCCCeeEec
Confidence 644 3 356678899999999873
No 127
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=96.13 E-value=0.066 Score=55.52 Aligned_cols=140 Identities=17% Similarity=0.184 Sum_probs=93.7
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh-hcccHHHHHHHHH
Q 012815 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-QALSLEESLRRSR 247 (456)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~-~~~~ldeAI~Rak 247 (456)
-+.+.+.++|++.|-+-|...--.-||.++. -++.++|+...++.+++.. .-++++=-.-. -..+.+++++-+.
T Consensus 46 ~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~-~Vtld~mi~H~~aV~Rga~----~a~vVaDmPfgSY~~s~e~av~nA~ 120 (332)
T PLN02424 46 PSAVHVDSAGIDVCLVGDSAAMVVHGHDTTL-PITLDEMLVHCRAVARGAN----RPLLVGDLPFGSYESSTDQAVESAV 120 (332)
T ss_pred HHHHHHHHcCCCEEEECCcHHHHhcCCCCCC-CcCHHHHHHHHHHHhccCC----CCEEEeCCCCCCCCCCHHHHHHHHH
Confidence 4456788899999999998643445776654 4799999999998887753 34555433222 1246799999999
Q ss_pred Hh-HhcCCCEEEeccC-C-CHHHHHHHHHhCCCCcee----ee-----eecc---CCCCCCC------CHHHHHhcCCCE
Q 012815 248 AF-ADAGADVLFIDAL-A-SKEEMKAFCEISPLVPKM----AN-----MLEG---GGKTPIL------NPLELEELGFKL 306 (456)
Q Consensus 248 Ay-~eAGAD~Ifie~~-~-s~eei~~i~~~v~~vP~~----~N-----~~~~---~g~tp~l------t~~eL~elGv~~ 306 (456)
.+ .++||++|-+|+- . ..+.++++++. ++|++ +| .+.+ .|++..- ....|+++|.-.
T Consensus 121 rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~--GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ 198 (332)
T PLN02424 121 RMLKEGGMDAVKLEGGSPSRVTAAKAIVEA--GIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFA 198 (332)
T ss_pred HHHHHhCCcEEEECCCcHHHHHHHHHHHHc--CCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcE
Confidence 88 5799999999986 2 23566777643 36766 33 3321 1232210 245688999888
Q ss_pred EeccchHHH
Q 012815 307 VAYPLSLIG 315 (456)
Q Consensus 307 Vs~p~~ll~ 315 (456)
+.+....-.
T Consensus 199 ivLE~Vp~~ 207 (332)
T PLN02424 199 VVLECVPAP 207 (332)
T ss_pred EEEcCCcHH
Confidence 888765444
No 128
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.13 E-value=0.15 Score=48.58 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=62.6
Q ss_pred ecccCChH----HHHHHHHhCCcEEEec-chHHhhhhc-ccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHH
Q 012815 93 GPACFDAL----SAKLVEKSGFSFCFTS-GFSISAARL-ALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMN 166 (456)
Q Consensus 93 ~pgayDal----SArl~e~aGfdAI~vS-G~avSas~l-G~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~n 166 (456)
-.+..|+- .|+.++++||++|-+- |........ +|=....-..+.+.+.++.+.+.+++||.+++-.|+.....
T Consensus 60 qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~ 139 (231)
T cd02801 60 QLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEE 139 (231)
T ss_pred EEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchH
Confidence 34555544 6778888899999775 322111110 11000111445566777788777789999999888754447
Q ss_pred HHHHHHHHHHhCccEEEeCCC
Q 012815 167 VKRTVKGYIKAGFAGIILEDQ 187 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq 187 (456)
..+.++.+.++|++.|++-+.
T Consensus 140 ~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 140 TLELAKALEDAGASALTVHGR 160 (231)
T ss_pred HHHHHHHHHHhCCCEEEECCC
Confidence 888889999999999999664
No 129
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.10 E-value=0.71 Score=47.80 Aligned_cols=151 Identities=18% Similarity=0.220 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhCccEEEeCCCC--------CC---CCccCCCCccccCH-HHHHHHHHHHHHHhHhhCCCeEEEEecchh
Q 012815 167 VKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVSR-EEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~--------~p---K~CGH~~gk~lvp~-ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~ 234 (456)
..+++++..++|++||.|--.- .| ||-..-+| .+... .-..+-|++++++ .|.+|.|.-|--..
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~---vg~~~~v~iRl~~~ 218 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGG-SLENRMRFLLEVLAAVRAA---VGPDFIVGIRISGD 218 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCC-CHHHHhHHHHHHHHHHHHH---cCCCCeEEEEeehh
Confidence 4456677788999999887621 23 33222233 22222 2222333333332 36788888886542
Q ss_pred h----cccHHHHHHHHHHhHhcC-CCEEEeccC------------------C--CHHHHHHHHHhCCCCceeeeeeccCC
Q 012815 235 Q----ALSLEESLRRSRAFADAG-ADVLFIDAL------------------A--SKEEMKAFCEISPLVPKMANMLEGGG 289 (456)
Q Consensus 235 ~----~~~ldeAI~RakAy~eAG-AD~Ifie~~------------------~--s~eei~~i~~~v~~vP~~~N~~~~~g 289 (456)
. ...++|+++-++.+.++| +|.|-|.+- + ..+.++++.+.+. +|+++| ++
T Consensus 219 ~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-ipvi~~----G~ 293 (343)
T cd04734 219 EDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVD-LPVFHA----GR 293 (343)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcC-CCEEee----CC
Confidence 1 235799999999999998 899877321 0 1245566666665 787765 22
Q ss_pred C-CCCCCHHHHHh-cCCCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 012815 290 K-TPILNPLELEE-LGFKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (456)
Q Consensus 290 ~-tp~lt~~eL~e-lGv~~Vs~p~~ll~aa~~A~~~~l~~i~~g~ 332 (456)
- +|. ..+++-+ =++..|.++-.++.-- +....+++|+
T Consensus 294 i~~~~-~~~~~l~~~~~D~V~~gR~~ladP-----~l~~k~~~g~ 332 (343)
T cd04734 294 IRDPA-EAEQALAAGHADMVGMTRAHIADP-----HLVAKAREGR 332 (343)
T ss_pred CCCHH-HHHHHHHcCCCCeeeecHHhHhCc-----cHHHHHHcCC
Confidence 1 221 1333333 4488887766554432 4455556654
No 130
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=96.06 E-value=0.23 Score=52.43 Aligned_cols=190 Identities=14% Similarity=0.111 Sum_probs=107.1
Q ss_pred cccCCCCCC---CHHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCcc
Q 012815 125 LALPDTGFI---SYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK 200 (456)
Q Consensus 125 lG~PD~~~l---t~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~ 200 (456)
.|++..+.+ .+++.+...+++.+.. +.|||+-. +|..++....+.++.++++|+++|-|-=....+..+...|..
T Consensus 70 ~g~~n~~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si-~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~ 148 (420)
T PRK08318 70 IGFNNIELITDRPLEVNLREIRRVKRDYPDRALIASI-MVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSA 148 (420)
T ss_pred ccccCcccccccCHHHHHHHHHHHHhhCCCceEEEEe-ccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCccc
Confidence 455555443 3566666666665544 58888765 343246778899999999999999886542111110111222
Q ss_pred c-cCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEe--------------------
Q 012815 201 V-VSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI-------------------- 259 (456)
Q Consensus 201 l-vp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifi-------------------- 259 (456)
+ -..+.+.+-+++++++. ..++++-=|-+ +++..+-+++..++|||.|.+
T Consensus 149 ~~~~~~~~~~i~~~v~~~~---~~Pv~vKl~p~------~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~ 219 (420)
T PRK08318 149 VGQVPELVEMYTRWVKRGS---RLPVIVKLTPN------ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPI 219 (420)
T ss_pred ccCCHHHHHHHHHHHHhcc---CCcEEEEcCCC------cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCce
Confidence 2 23343433344443332 24555555532 223456678888999999882
Q ss_pred -cc------C---C----CHHHHHHHHHhCC--CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHH
Q 012815 260 -DA------L---A----SKEEMKAFCEISP--LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQD 323 (456)
Q Consensus 260 -e~------~---~----s~eei~~i~~~v~--~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~ 323 (456)
++ + . +.+.+.++.+.++ .+|+..| ||-...-+..|+-..|...|-++..+++.-...+++
T Consensus 220 ~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~----GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~ 295 (420)
T PRK08318 220 VNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGI----GGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVED 295 (420)
T ss_pred ecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEee----cCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHH
Confidence 10 0 0 1345556666552 3566543 443332345566668998888888777655555555
Q ss_pred HHHHH
Q 012815 324 ALTAI 328 (456)
Q Consensus 324 ~l~~i 328 (456)
..+.|
T Consensus 296 I~~~L 300 (420)
T PRK08318 296 MISGL 300 (420)
T ss_pred HHHHH
Confidence 55554
No 131
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.04 E-value=2 Score=43.52 Aligned_cols=177 Identities=11% Similarity=0.081 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHhc---cCCcEEEeCCCCCCCHHHHHHHHHHHHHh---CccEEEeCCCCCCCCccCCCCc-ccc-CH
Q 012815 133 ISYGEMVDQGQLITQA---VSIPVIGDGDNGYGNAMNVKRTVKGYIKA---GFAGIILEDQVSPKGCGHTRGR-KVV-SR 204 (456)
Q Consensus 133 lt~~Eml~~~r~I~ra---~~iPVIaD~DtGYG~~~nv~rtVk~l~~A---GaaGI~IEDq~~pK~CGH~~gk-~lv-p~ 204 (456)
...+.++++.+...+. .+.||++-+ +| +++...+.++++.+. |+++|-|-=. |-|..++ .+. +.
T Consensus 71 ~g~~~~~~~i~~~~~~~~~~~~pvivsi-~g--~~~~~~~~~~~~~~~~~~~ad~ielN~s-----CPn~~~~~~~~~~~ 142 (294)
T cd04741 71 LGLDYYLEYIRTISDGLPGSAKPFFISV-TG--SAEDIAAMYKKIAAHQKQFPLAMELNLS-----CPNVPGKPPPAYDF 142 (294)
T ss_pred cCHHHHHHHHHHHhhhccccCCeEEEEC-CC--CHHHHHHHHHHHHhhccccccEEEEECC-----CCCCCCcccccCCH
Confidence 3477888888776554 579999987 33 377788888888875 6999877554 5565333 232 45
Q ss_pred HHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhc--CCCEEEe----------cc--CC-------
Q 012815 205 EEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA--GADVLFI----------DA--LA------- 263 (456)
Q Consensus 205 ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eA--GAD~Ifi----------e~--~~------- 263 (456)
+.+.+-+++++++.. .++++-=|-+. +.++..+-+++..++ |+|.|.+ +. ..
T Consensus 143 ~~~~~i~~~v~~~~~---iPv~vKl~p~~----~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~ 215 (294)
T cd04741 143 DATLEYLTAVKAAYS---IPVGVKTPPYT----DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKT 215 (294)
T ss_pred HHHHHHHHHHHHhcC---CCEEEEeCCCC----CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCC
Confidence 555555555544432 45555555432 223444556666677 9998873 21 10
Q ss_pred -------------CHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHH
Q 012815 264 -------------SKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI 328 (456)
Q Consensus 264 -------------s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i 328 (456)
..+.++++.+.++ .+|+..| ||-...-+..|+-..|.+.|-.+..++..-...+++..+.|
T Consensus 216 ~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~----GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 290 (294)
T cd04741 216 GFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGV----GGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKEL 290 (294)
T ss_pred CCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEe----CCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHHHH
Confidence 0134455556664 2565543 34322223445555788887777666653333344443333
No 132
>PLN02591 tryptophan synthase
Probab=96.03 E-value=0.54 Score=46.99 Aligned_cols=172 Identities=17% Similarity=0.239 Sum_probs=107.5
Q ss_pred HHHHHhCCcEEEec-chHHhhhhcccCCC------------CCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHH---H
Q 012815 103 KLVEKSGFSFCFTS-GFSISAARLALPDT------------GFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM---N 166 (456)
Q Consensus 103 rl~e~aGfdAI~vS-G~avSas~lG~PD~------------~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~---n 166 (456)
+.+.++|+|.|=++ -+. -.+.|+ ..+++++.++.++.+++..++|++. .+|-|+. .
T Consensus 23 ~~l~~~Gad~iElGiPfS-----DP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~il---m~Y~N~i~~~G 94 (250)
T PLN02591 23 RLLDACGADVIELGVPYS-----DPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVL---FTYYNPILKRG 94 (250)
T ss_pred HHHHHCCCCEEEECCCCC-----CCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE---EecccHHHHhH
Confidence 44566788888766 111 122222 2467888999999998778899873 5788862 3
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE-ecchhhcccHHHHHHH
Q 012815 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA-RTDSRQALSLEESLRR 245 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA-RTDA~~~~~ldeAI~R 245 (456)
+-+-++++.++|++|+.|-|= |.||..+-+.++.+ .|-+++... =|-. -+|
T Consensus 95 ~~~F~~~~~~aGv~GviipDL---------------P~ee~~~~~~~~~~----~gl~~I~lv~Ptt~---------~~r 146 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDL---------------PLEETEALRAEAAK----NGIELVLLTTPTTP---------TER 146 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCC---------------CHHHHHHHHHHHHH----cCCeEEEEeCCCCC---------HHH
Confidence 567788889999999999873 44665544444433 244555554 3322 167
Q ss_pred HHHhHhcCCCEEEecc---C--------CCHHH-HHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchH
Q 012815 246 SRAFADAGADVLFIDA---L--------ASKEE-MKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (456)
Q Consensus 246 akAy~eAGAD~Ifie~---~--------~s~ee-i~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~l 313 (456)
.+++++..-..||+-+ + ...++ ++++.+ ...+|+++. + |-...=..+++.++|..-|+.|+.+
T Consensus 147 i~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~-~~~~Pv~vG---F-GI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 147 MKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKE-VTDKPVAVG---F-GISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred HHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh-cCCCceEEe---C-CCCCHHHHHHHHhcCCCEEEECHHH
Confidence 7888877777888643 1 11223 334434 334677643 2 3221124577888999999999987
Q ss_pred HH
Q 012815 314 IG 315 (456)
Q Consensus 314 l~ 315 (456)
+.
T Consensus 222 Vk 223 (250)
T PLN02591 222 VK 223 (250)
T ss_pred HH
Confidence 54
No 133
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=96.01 E-value=1.4 Score=46.31 Aligned_cols=227 Identities=11% Similarity=0.011 Sum_probs=137.2
Q ss_pred HHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcc---cCCC----CCCCHHHHHHHHHHHHhc
Q 012815 80 SLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLA---LPDT----GFISYGEMVDQGQLITQA 148 (456)
Q Consensus 80 ~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG---~PD~----~~lt~~Eml~~~r~I~ra 148 (456)
.|....+.+--+.+.|+|+.-+++.+ |+...+.|...+-+.. ...| +++. -......+...++..++.
T Consensus 12 ~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~ 90 (350)
T PRK09197 12 MFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGA-AFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEH 90 (350)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhH-hhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 34444445556889999999999876 5568888876644332 1223 3431 112233467778888888
Q ss_pred cCCcEEEeCCCCCCC-HHHHH-------HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHh
Q 012815 149 VSIPVIGDGDNGYGN-AMNVK-------RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (456)
Q Consensus 149 ~~iPVIaD~DtGYG~-~~nv~-------rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~ 220 (456)
.++||.+=.|.|.-. ...+. +.+++-+++|...|.|... | .|.||=+++-+.+++.++.
T Consensus 91 ~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS-------~------lpfEeNI~~TkevVe~Ah~ 157 (350)
T PRK09197 91 YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLS-------E------EPLEENIEICSKYLERMAK 157 (350)
T ss_pred CCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCC-------C------CCHHHHHHHHHHHHHHHHH
Confidence 899999999999542 22222 2223333445999988432 3 4778888888888776654
Q ss_pred hCC----CeEEEEecc-hh---h------cccHHHHHHHHHHhH-hcCC----CEEEe-----ccCC-------CHHHHH
Q 012815 221 SGS----DIVIVARTD-SR---Q------ALSLEESLRRSRAFA-DAGA----DVLFI-----DALA-------SKEEMK 269 (456)
Q Consensus 221 ~G~----dfvIiARTD-A~---~------~~~ldeAI~RakAy~-eAGA----D~Ifi-----e~~~-------s~eei~ 269 (456)
.|. ++=-++..+ .. . -... +.|+.|. +.|+ |++-| ++.. +.+.++
T Consensus 158 ~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdP----eeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~ 233 (350)
T PRK09197 158 AGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQP----EDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILK 233 (350)
T ss_pred cCCEEEEEEeccCCCcCCccccccccccccCCH----HHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHH
Confidence 331 111122211 10 0 0123 3455555 4576 87654 3321 467788
Q ss_pred HHHHhCC--------CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 012815 270 AFCEISP--------LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (456)
Q Consensus 270 ~i~~~v~--------~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~ 327 (456)
++.+.++ .+|+. ++++..+|.-...+.-+.|++-|=+...+..+...++++.+..
T Consensus 234 ~I~~~v~~~~~~~~~~vPLV---LHGgSGipde~i~~ai~~GI~KINi~T~l~~a~~~~~~~~~~~ 296 (350)
T PRK09197 234 DSQEYVSKKFGLPAKPFDFV---FHGGSGSTLEEIREAVSYGVVKMNIDTDTQWAFWRGVLDYYFK 296 (350)
T ss_pred HHHHHHHHhhCCCCCCCCEE---EeCCCCCCHHHHHHHHHCCCeeEEeCcHHHHHHHHHHHHHHHh
Confidence 8887761 36653 4543333322234455799999999999999999999998754
No 134
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.94 E-value=0.31 Score=46.63 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=99.0
Q ss_pred ecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCH-HHHHHHH
Q 012815 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNA-MNVKRTV 171 (456)
Q Consensus 93 ~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~-~nv~rtV 171 (456)
|.|.-|+-.++.+.++|. +|+=....++.+++.+.++.+.+..+.|+.+= .-+.+. ....+.+
T Consensus 10 m~g~~~~~~~~~~~~~G~--------------ig~i~~~~~~~~~~~~~~~~i~~~~~~~~~v~--~i~~~~~~~~~~~~ 73 (236)
T cd04730 10 MAGVSTPELAAAVSNAGG--------------LGFIGAGYLTPEALRAEIRKIRALTDKPFGVN--LLVPSSNPDFEALL 73 (236)
T ss_pred CCCCCCHHHHHHHHhCCC--------------ccccCCCCCCHHHHHHHHHHHHHhcCCCeEEe--EecCCCCcCHHHHH
Confidence 456678888888888762 11113345678888787777765543343210 001111 1345566
Q ss_pred HHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHh
Q 012815 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD 251 (456)
Q Consensus 172 k~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~e 251 (456)
+.+.++|+++|++-+.. + .++.++++ + . +..++.-.. . .++++++.+
T Consensus 74 ~~~~~~g~d~v~l~~~~--------------~-~~~~~~~~---~----~--~i~~i~~v~-----~----~~~~~~~~~ 120 (236)
T cd04730 74 EVALEEGVPVVSFSFGP--------------P-AEVVERLK---A----A--GIKVIPTVT-----S----VEEARKAEA 120 (236)
T ss_pred HHHHhCCCCEEEEcCCC--------------C-HHHHHHHH---H----c--CCEEEEeCC-----C----HHHHHHHHH
Confidence 77888999999995431 1 23333322 1 1 222222221 1 255677788
Q ss_pred cCCCEEEeccC-----------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHH
Q 012815 252 AGADVLFIDAL-----------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVS 317 (456)
Q Consensus 252 AGAD~Ifie~~-----------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa 317 (456)
+|||.|.+.+. ...+.++++.+.++ +|++++ +|-++.-+..++.++|..-|.++..++...
T Consensus 121 ~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~-~Pvi~~----GGI~~~~~v~~~l~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 121 AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVD-IPVIAA----GGIADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhC-CCEEEE----CCCCCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence 99999987542 22456777776665 676543 343332346777779999999988766543
No 135
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.89 E-value=2 Score=45.04 Aligned_cols=230 Identities=12% Similarity=-0.009 Sum_probs=137.6
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCC-------CCCHHHHHHHHHHHHh
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTG-------FISYGEMVDQGQLITQ 147 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~-------~lt~~Eml~~~r~I~r 147 (456)
+-|....+.+--+.+.|+|+.-+++.+ |+.+.+.|..-+-+.. ..++..... ......+...++.+++
T Consensus 6 ~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~ 84 (345)
T cd00946 6 KLFDYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGA-AFYAGKGLKNEKQKASIAGAIAAAHHVRSMAE 84 (345)
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHH-hhcCCccccccchhhhhhhHHHHHHHHHHHHH
Confidence 344444455556889999999998865 6668898887654432 122222000 0112256677788888
Q ss_pred ccCCcEEEeCCCCCCC----HHHHHHH----HHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 148 AVSIPVIGDGDNGYGN----AMNVKRT----VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 148 a~~iPVIaD~DtGYG~----~~nv~rt----Vk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
..++||.+=.|+|.-. .+.+.+. +++.+++|...|.| |.. | .|.||-++.-+.+++-++
T Consensus 85 ~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMi-DgS------~------lp~eENI~~TkevVe~Ah 151 (345)
T cd00946 85 HYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHML-DLS------E------EPLEENIEICKKYLERMA 151 (345)
T ss_pred HCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEe-eCC------C------CCHHHHHHHHHHHHHHHH
Confidence 8899999999999641 2333333 34455779999999 442 2 377888888888877665
Q ss_pred hhCC----CeEEEEec-chhh---------cccHHHHHHHHHHhHhc-----CCCEEEe-----ccCC-------CHHHH
Q 012815 220 ESGS----DIVIVART-DSRQ---------ALSLEESLRRSRAFADA-----GADVLFI-----DALA-------SKEEM 268 (456)
Q Consensus 220 ~~G~----dfvIiART-DA~~---------~~~ldeAI~RakAy~eA-----GAD~Ifi-----e~~~-------s~eei 268 (456)
..|. ++=-++.. |... -..- +.|+.|.+. |+|++=+ ||+. +.+.+
T Consensus 152 ~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdP----eeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L 227 (345)
T cd00946 152 KINMWLEMEIGITGGEEDGVDNSGVDNAELYTQP----EDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEIL 227 (345)
T ss_pred HcCCEEEEEecccCCcccCcccccccccccCCCH----HHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHH
Confidence 4331 11112111 1100 0122 446666664 8897643 4431 45677
Q ss_pred HHH----HHhCC---CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 012815 269 KAF----CEISP---LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (456)
Q Consensus 269 ~~i----~~~v~---~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~ 327 (456)
+++ .+.++ ++|+|+ +++++..+|.-...+.-+.|++-|=+...+..+.++++++.+..
T Consensus 228 ~~I~~~i~~~~~~~~~~~ipL-VLHGgSG~~~e~i~kai~~GI~KiNi~T~l~~a~~~~i~~~~~~ 292 (345)
T cd00946 228 GEHQDYVREKLGLADDKPLYF-VFHGGSGSTKEEIREAISYGVVKMNIDTDTQWAYWEGVRNYYLK 292 (345)
T ss_pred HHHHHHHHHhhccccCCCCCE-EEeCCCCCCHHHHHHHHHcCCeeEEeCcHHHHHHHHHHHHHHhh
Confidence 777 44442 112332 34553333322234445799999999999999999999998753
No 136
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=95.88 E-value=0.58 Score=46.67 Aligned_cols=174 Identities=18% Similarity=0.171 Sum_probs=104.7
Q ss_pred HHHHHHhCCcEEEec-chHHhhhhcccCC------------CCCCCHHHHHHHHHHHHhc-cCCcEEEeCCCCCCCHH--
Q 012815 102 AKLVEKSGFSFCFTS-GFSISAARLALPD------------TGFISYGEMVDQGQLITQA-VSIPVIGDGDNGYGNAM-- 165 (456)
Q Consensus 102 Arl~e~aGfdAI~vS-G~avSas~lG~PD------------~~~lt~~Eml~~~r~I~ra-~~iPVIaD~DtGYG~~~-- 165 (456)
++.++++|+|.|=++ -+. -.+.| ..-+++++.++.++.|++. +++|++. .+|-|+.
T Consensus 30 ~~~l~~~Gad~iElGiPfs-----DP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~---m~Y~Npi~~ 101 (256)
T TIGR00262 30 IKTLIEAGADALELGVPFS-----DPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGL---LTYYNLIFR 101 (256)
T ss_pred HHHHHHcCCCEEEECCCCC-----CCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEE---EEeccHHhh
Confidence 345567899988876 221 11222 1246889999999999976 7899863 3577762
Q ss_pred -HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeE-EEEecchhhcccHHHHH
Q 012815 166 -NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIV-IVARTDSRQALSLEESL 243 (456)
Q Consensus 166 -nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfv-IiARTDA~~~~~ldeAI 243 (456)
.+.+-++++.++|++|+.|=|- |.+|..+-+.++++ .|.+.+ +++=+-. .
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDl---------------p~ee~~~~~~~~~~----~gl~~i~lv~P~T~---------~ 153 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADL---------------PLEESGDLVEAAKK----HGVKPIFLVAPNAD---------D 153 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCC---------------ChHHHHHHHHHHHH----CCCcEEEEECCCCC---------H
Confidence 3566788999999999999774 33444433333332 244433 3333221 3
Q ss_pred HHHHHhHhcCCCEEEec---cCC---------CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 244 RRSRAFADAGADVLFID---ALA---------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 244 ~RakAy~eAGAD~Ifie---~~~---------s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
+|.+.+.+..-..||+- +.+ ..+.++++.+..+ .|+.+ .+ |-...-+.+++.++|..-|+.|+
T Consensus 154 eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~-~pi~v---gf-GI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 154 ERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSA-KPVLV---GF-GISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcC-CCEEE---eC-CCCCHHHHHHHHHcCCCEEEECH
Confidence 67777777754466652 221 1234444444443 45432 33 43211356778889999999999
Q ss_pred hHHHH
Q 012815 312 SLIGV 316 (456)
Q Consensus 312 ~ll~a 316 (456)
.+++.
T Consensus 229 aiv~~ 233 (256)
T TIGR00262 229 AIVKI 233 (256)
T ss_pred HHHHH
Confidence 87653
No 137
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.83 E-value=0.63 Score=44.63 Aligned_cols=142 Identities=20% Similarity=0.162 Sum_probs=81.0
Q ss_pred HHHHHHHhccCCcEE---E-eC---CCC-CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCcc-ccCHHHHHHH
Q 012815 140 DQGQLITQAVSIPVI---G-DG---DNG-YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK-VVSREEAVMR 210 (456)
Q Consensus 140 ~~~r~I~ra~~iPVI---a-D~---DtG-YG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~-lvp~ee~v~k 210 (456)
+.++.+.+.+++|++ - |. +.- ++ ..+.++.+.++||+.|.+ |-. +.. ++ .....+++++
T Consensus 46 ~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~----~~~~v~~a~~aGad~I~~-d~~------~~~-~p~~~~~~~~i~~ 113 (221)
T PRK01130 46 EDIKAIRAVVDVPIIGIIKRDYPDSEVYITP----TLKEVDALAAAGADIIAL-DAT------LRP-RPDGETLAELVKR 113 (221)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceECC----CHHHHHHHHHcCCCEEEE-eCC------CCC-CCCCCCHHHHHHH
Confidence 445666666789987 2 31 111 12 234568889999997766 432 110 00 0122344433
Q ss_pred HHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEecc-----------CCCHHHHHHHHHhCCCCc
Q 012815 211 IKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA-----------LASKEEMKAFCEISPLVP 279 (456)
Q Consensus 211 I~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~-----------~~s~eei~~i~~~v~~vP 279 (456)
+ ++. .++.++..+. . .++++...++|+|.+.+.. ....+.++++.+.+. +|
T Consensus 114 ~---~~~-----~~i~vi~~v~-----t----~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iP 175 (221)
T PRK01130 114 I---KEY-----PGQLLMADCS-----T----LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CP 175 (221)
T ss_pred H---HhC-----CCCeEEEeCC-----C----HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CC
Confidence 3 221 2455555443 2 2445678899999997631 233567778877765 67
Q ss_pred eeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 280 KMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 280 ~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
+.+ .+|-...-+.+++.++|+.-|..|..++.
T Consensus 176 via----~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 176 VIA----EGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred EEE----ECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 653 23431112457788899999999977654
No 138
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.80 E-value=0.97 Score=46.53 Aligned_cols=186 Identities=18% Similarity=0.213 Sum_probs=101.2
Q ss_pred HHHHHHhccC-CcEEEeCCC----CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHH
Q 012815 141 QGQLITQAVS-IPVIGDGDN----GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (456)
Q Consensus 141 ~~r~I~ra~~-iPVIaD~Dt----GYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~ 215 (456)
..+.+..... .|+++-.-. || +.+.+.+.++.+ ++.+--+|+.- +.......+.. +.+..++.|++.+
T Consensus 102 ~~~~vr~~~~~~p~~~Nl~~~~~~~~-~~~~~~~~i~~~-~adalel~l~~---~q~~~~~~~~~--df~~~~~~i~~l~ 174 (326)
T cd02811 102 SFTVVREAPPNGPLIANLGAVQLNGY-GVEEARRAVEMI-EADALAIHLNP---LQEAVQPEGDR--DFRGWLERIEELV 174 (326)
T ss_pred HHHHHHHhCCCceEEeecCccccCCC-CHHHHHHHHHhc-CCCcEEEeCcc---hHhhcCCCCCc--CHHHHHHHHHHHH
Confidence 3344555554 887776543 33 445566555443 45555555521 00111111111 2344567777777
Q ss_pred HHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC-----------------------------CCHH
Q 012815 216 DARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------------------------ASKE 266 (456)
Q Consensus 216 ~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~-----------------------------~s~e 266 (456)
+..+ .++++-..-. . .. .+-++...++|+|+|.+.+. ++.+
T Consensus 175 ~~~~---vPVivK~~g~--g-~s----~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~ 244 (326)
T cd02811 175 KALS---VPVIVKEVGF--G-IS----RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAA 244 (326)
T ss_pred HhcC---CCEEEEecCC--C-CC----HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHH
Confidence 6532 3444432211 1 11 46688889999999997542 2234
Q ss_pred HHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHH---HHHHHHHHHcCCCCCCCCCCCHH
Q 012815 267 EMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRA---MQDALTAIKGGRIPSPGSMPSFQ 343 (456)
Q Consensus 267 ei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A---~~~~l~~i~~g~~~~~~~~~~~~ 343 (456)
.+.++.+.++.+|+.++ ||-.........-.+|.+.|.++..++.+.+.. +...+..+++. ++
T Consensus 245 ~l~~~~~~~~~ipIias----GGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~e----------l~ 310 (326)
T cd02811 245 SLLEVRSALPDLPLIAS----GGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEE----------LR 310 (326)
T ss_pred HHHHHHHHcCCCcEEEE----CCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHH----------HH
Confidence 55555555533665543 453333455666778999999999988887642 22344444322 34
Q ss_pred HHHHhcCcccHHHH
Q 012815 344 EIKETLGFNTYYEE 357 (456)
Q Consensus 344 e~~~lvg~~~~~~~ 357 (456)
.+..+.|+....++
T Consensus 311 ~~m~~~G~~si~el 324 (326)
T cd02811 311 TAMFLTGAKNLAEL 324 (326)
T ss_pred HHHHHhCCCCHHHh
Confidence 55556666655554
No 139
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=95.78 E-value=0.1 Score=52.53 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=69.4
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh-cccHHHHHHHHH
Q 012815 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-ALSLEESLRRSR 247 (456)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~-~~~ldeAI~Rak 247 (456)
-+++.+.++|++.|.+-|...--..||..- .=++.++|+.-.+|.++... +-+|++--=-.. ..+.++|++-|.
T Consensus 27 ~~A~~~d~agvD~iLVGDSlgmv~~G~~sT-~~vtld~mi~h~~aV~Rga~----~~~vv~DmPf~sy~~s~e~av~nA~ 101 (261)
T PF02548_consen 27 PSARIADEAGVDIILVGDSLGMVVLGYDST-LPVTLDEMIYHTKAVRRGAP----NAFVVADMPFGSYQASPEQAVRNAG 101 (261)
T ss_dssp HHHHHHHHTT-SEEEE-TTHHHHTT--SSS-TT--HHHHHHHHHHHHHH-T----SSEEEEE--TTSSTSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCcHHHheeCCCCC-cCcCHHHHHHHHHHHHhcCC----CceEEecCCcccccCCHHHHHHHHH
Confidence 445677889999999999864334566542 23688999999888887763 456665422111 147899999999
Q ss_pred HhHh-cCCCEEEeccC-CCHHHHHHHHHhCCCCceee
Q 012815 248 AFAD-AGADVLFIDAL-ASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 248 Ay~e-AGAD~Ifie~~-~s~eei~~i~~~v~~vP~~~ 282 (456)
.+.+ +|||+|-+|+- ...+.++.++++ ++|++-
T Consensus 102 rl~ke~GadaVKlEGg~~~~~~i~~l~~~--GIPV~g 136 (261)
T PF02548_consen 102 RLMKEAGADAVKLEGGAEIAETIKALVDA--GIPVMG 136 (261)
T ss_dssp HHHHTTT-SEEEEEBSGGGHHHHHHHHHT--T--EEE
T ss_pred HHHHhcCCCEEEeccchhHHHHHHHHHHC--CCcEEE
Confidence 9987 99999999985 456788888876 477764
No 140
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.76 E-value=0.18 Score=53.30 Aligned_cols=160 Identities=13% Similarity=0.098 Sum_probs=90.7
Q ss_pred HHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012815 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (456)
Q Consensus 101 SArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGa 179 (456)
.|+.++++|++++=+- |.-......|.-....-..+.+.+.++.+.+.+++||++=+--.+. ++.+.++.++++||
T Consensus 118 ~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~---~~~~~a~~~~~~Ga 194 (420)
T PRK08318 118 IAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNIT---DIREPARAAKRGGA 194 (420)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcc---cHHHHHHHHHHCCC
Confidence 4566778898887764 3221000011111111345566677778877889999998864333 46677788899999
Q ss_pred cEEEeCCCCC-------------C----C-CccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHH
Q 012815 180 AGIILEDQVS-------------P----K-GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (456)
Q Consensus 180 aGI~IEDq~~-------------p----K-~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~lde 241 (456)
+||.+-.... | + ..|...|+.+.|.. .+.|+.+.++.. .+++-|+|=.+-...
T Consensus 195 dgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~--l~~v~~~~~~~~--~~~ipIig~GGI~s~----- 265 (420)
T PRK08318 195 DAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIA--LNMVAEIARDPE--TRGLPISGIGGIETW----- 265 (420)
T ss_pred CEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHH--HHHHHHHHhccc--cCCCCEEeecCcCCH-----
Confidence 9999533321 1 0 22333455555543 344444433321 136778887666542
Q ss_pred HHHHHHHhHhcCCCEEEecc--C-CCHHHHHHHHHh
Q 012815 242 SLRRSRAFADAGADVLFIDA--L-ASKEEMKAFCEI 274 (456)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~--~-~s~eei~~i~~~ 274 (456)
+.+..|..||||+|.+-. + ...+.++++.+.
T Consensus 266 --~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~ 299 (420)
T PRK08318 266 --RDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISG 299 (420)
T ss_pred --HHHHHHHHhCCChheeeeeeccCCchhHHHHHHH
Confidence 445556679999988743 1 133444444443
No 141
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.67 E-value=0.24 Score=50.42 Aligned_cols=161 Identities=16% Similarity=0.102 Sum_probs=89.4
Q ss_pred eecccCCh----HHHHHHHHhCCcEEEecchHHhhhhcccCCCCC--C-CHHHHHHHHHHHHhccCCcEEEeCCCCCCC-
Q 012815 92 QGPACFDA----LSAKLVEKSGFSFCFTSGFSISAARLALPDTGF--I-SYGEMVDQGQLITQAVSIPVIGDGDNGYGN- 163 (456)
Q Consensus 92 v~pgayDa----lSArl~e~aGfdAI~vSG~avSas~lG~PD~~~--l-t~~Eml~~~r~I~ra~~iPVIaD~DtGYG~- 163 (456)
+-.+..|+ -.|+.++++|||+|=+-..+-..-.. -.-.|. + ..+-+.+.++.|.+.+++||++-+-.|+.+
T Consensus 67 ~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~-~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~ 145 (319)
T TIGR00737 67 VQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKIT-KKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDA 145 (319)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhc-CCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCC
Confidence 33455555 45667778899999774211111000 001121 1 345566777888888899999998777643
Q ss_pred HHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHH
Q 012815 164 AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESL 243 (456)
Q Consensus 164 ~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI 243 (456)
.....+.++.+.++|+++|.+-... +.+++.++ +.-+++.+ ++++. +.+++.++.... .
T Consensus 146 ~~~~~~~a~~l~~~G~d~i~vh~r~--~~~~~~~~----~~~~~i~~---i~~~~---~ipvi~nGgI~~--~------- 204 (319)
T TIGR00737 146 HINAVEAARIAEDAGAQAVTLHGRT--RAQGYSGE----ANWDIIAR---VKQAV---RIPVIGNGDIFS--P------- 204 (319)
T ss_pred cchHHHHHHHHHHhCCCEEEEEccc--ccccCCCc----hhHHHHHH---HHHcC---CCcEEEeCCCCC--H-------
Confidence 2356778899999999999995432 22333221 11233333 33332 234555444322 1
Q ss_pred HHHHHhH-hcCCCEEEecc--CCCHHHHHHHHHh
Q 012815 244 RRSRAFA-DAGADVLFIDA--LASKEEMKAFCEI 274 (456)
Q Consensus 244 ~RakAy~-eAGAD~Ifie~--~~s~eei~~i~~~ 274 (456)
+.+..+. +.|||+|++-- +.++..+.++.+.
T Consensus 205 ~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~ 238 (319)
T TIGR00737 205 EDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQY 238 (319)
T ss_pred HHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHH
Confidence 3344444 57999999842 3444455555543
No 142
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.67 E-value=0.36 Score=49.56 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhCccEEEeCCCC--------CC---CCccCCCCccccCH-HHHHHHHHHHHHHhHhhCCCeEEEEecch
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVSR-EEAVMRIKAAVDARKESGSDIVIVARTDS 233 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~--------~p---K~CGH~~gk~lvp~-ee~v~kI~AA~~Ar~~~G~dfvIiARTDA 233 (456)
+..+++++..++|.+||.|--.- .| ||-..-+| .+... .-..+.|++++++ .|+||.|..|.-.
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGG-slenR~rf~~EiI~aIR~a---vG~d~~v~vris~ 225 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGG-SLENRARLLLEIYDAIRAA---VGPGFPVGIKLNS 225 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCC-CHHHHHHHHHHHHHHHHHH---cCCCCeEEEEEcH
Confidence 44566788889999999986542 23 22222223 22222 2234455555544 3678888888654
Q ss_pred h----hcccHHHHHHHHHHhHhcCCCEEEeccC-----C-----C----------HHHHHHHHHhCCCCceeeeeeccCC
Q 012815 234 R----QALSLEESLRRSRAFADAGADVLFIDAL-----A-----S----------KEEMKAFCEISPLVPKMANMLEGGG 289 (456)
Q Consensus 234 ~----~~~~ldeAI~RakAy~eAGAD~Ifie~~-----~-----s----------~eei~~i~~~v~~vP~~~N~~~~~g 289 (456)
. .....+|+++-++.+.++|+|.|=|.+- . . .+..+++.+.++ +|++++ ++
T Consensus 226 ~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~-iPVi~~----G~ 300 (338)
T cd04733 226 ADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTK-TPLMVT----GG 300 (338)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcC-CCEEEe----CC
Confidence 2 2346799999999999999999865321 0 0 245567777776 787765 12
Q ss_pred CCCCCCHHHHHhcC-CCEEeccchHH
Q 012815 290 KTPILNPLELEELG-FKLVAYPLSLI 314 (456)
Q Consensus 290 ~tp~lt~~eL~elG-v~~Vs~p~~ll 314 (456)
-...-..+++-+.| +..|.++-.++
T Consensus 301 i~t~~~a~~~l~~g~aD~V~lgR~~i 326 (338)
T cd04733 301 FRTRAAMEQALASGAVDGIGLARPLA 326 (338)
T ss_pred CCCHHHHHHHHHcCCCCeeeeChHhh
Confidence 11001233444444 77777765443
No 143
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=95.65 E-value=0.52 Score=43.00 Aligned_cols=67 Identities=27% Similarity=0.346 Sum_probs=46.1
Q ss_pred HHHHHHhHhcCCCEEEecc------------CCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEecc
Q 012815 243 LRRSRAFADAGADVLFIDA------------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~------------~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p 310 (456)
.+.++.+.++|+|.|++.. ....+.++++++... +|+.+ . ||-++ -+..++.+.|+..+..+
T Consensus 105 ~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~a--~--GGi~~-~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 105 LEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVE-IPVVA--I--GGITP-ENAAEVLAAGADGVAVI 178 (196)
T ss_pred HHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCC-CCEEE--E--CCCCH-HHHHHHHHcCCCEEEEe
Confidence 4567788899999998742 233567777776543 55432 2 34332 35789999999999998
Q ss_pred chHHH
Q 012815 311 LSLIG 315 (456)
Q Consensus 311 ~~ll~ 315 (456)
..++.
T Consensus 179 ~~i~~ 183 (196)
T cd00564 179 SAITG 183 (196)
T ss_pred hHhhc
Confidence 87664
No 144
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.62 E-value=0.31 Score=48.93 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=53.3
Q ss_pred HHHHHHhC--CcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012815 102 AKLVEKSG--FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (456)
Q Consensus 102 Arl~e~aG--fdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG 178 (456)
|+.+++++ ++++=+- |.-. ..|+-+.-.-..+.+.+.++++.+.+++||++-+.. +..++.+.++.++++|
T Consensus 109 a~~~~~~~~~~d~ielN~~cP~---~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~---~~~~~~~~a~~l~~~G 182 (300)
T TIGR01037 109 AEKLEKAPPYVDAYELNLSCPH---VKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP---NVTDITEIAKAAEEAG 182 (300)
T ss_pred HHHHHhccCccCEEEEECCCCC---CCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC---ChhhHHHHHHHHHHcC
Confidence 55566553 7777765 2111 123333323456677778888888889999999863 3346777888999999
Q ss_pred ccEEEeCC
Q 012815 179 FAGIILED 186 (456)
Q Consensus 179 aaGI~IED 186 (456)
+++|++-.
T Consensus 183 ~d~i~v~n 190 (300)
T TIGR01037 183 ADGLTLIN 190 (300)
T ss_pred CCEEEEEc
Confidence 99999853
No 145
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.60 E-value=0.36 Score=47.93 Aligned_cols=174 Identities=14% Similarity=0.205 Sum_probs=101.0
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
|+..++.|++.+++.=..-+ ..+.+ ..+...+.|++.+++||+++. |..+.+ .++++..+|+.+
T Consensus 36 a~~~~~~g~~~l~i~Dl~~~--~~~~~--------~n~~~i~~i~~~~~~pv~~gG--Gi~s~~----d~~~l~~~G~~~ 99 (258)
T PRK01033 36 VRIFNEKEVDELIVLDIDAS--KRGSE--------PNYELIENLASECFMPLCYGG--GIKTLE----QAKKIFSLGVEK 99 (258)
T ss_pred HHHHHHcCCCEEEEEECCCC--cCCCc--------ccHHHHHHHHHhCCCCEEECC--CCCCHH----HHHHHHHCCCCE
Confidence 57778899999998843311 11111 235567778888899999874 443433 355666789999
Q ss_pred EEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeE---EEEecch----h-h------cccHHHHHHHHH
Q 012815 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIV---IVARTDS----R-Q------ALSLEESLRRSR 247 (456)
Q Consensus 182 I~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfv---IiARTDA----~-~------~~~ldeAI~Rak 247 (456)
|.|- .. . +-.+ +++.++.... +.+-+ |-.|..- . . ... ...++-++
T Consensus 100 vvig-s~------~-----~~~~-~~~~~~~~~~------~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~-~~~~e~~~ 159 (258)
T PRK01033 100 VSIN-TA------A-----LEDP-DLITEAAERF------GSQSVVVSIDVKKNLGGKFDVYTHNGTKKLK-KDPLELAK 159 (258)
T ss_pred EEEC-hH------H-----hcCH-HHHHHHHHHh------CCCcEEEEEEEecCCCCcEEEEEcCCeecCC-CCHHHHHH
Confidence 9873 21 1 1112 3333332221 11111 1122110 0 0 001 12356677
Q ss_pred HhHhcCCCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHH-hcCCCEEeccchHHHH
Q 012815 248 AFADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELE-ELGFKLVAYPLSLIGV 316 (456)
Q Consensus 248 Ay~eAGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~-elGv~~Vs~p~~ll~a 316 (456)
.+.++|++.+.+..+ ++.+.++++++.++ +|+.++ ||-...=+..++. +.|+.-|+.+..+.+.
T Consensus 160 ~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~-ipvIas----GGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 160 EYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALK-IPLIAL----GGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCC-CCEEEe----CCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 788999999998855 34678899988866 787654 3432222345555 7899999998876653
No 146
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.55 E-value=0.33 Score=47.05 Aligned_cols=207 Identities=22% Similarity=0.244 Sum_probs=117.2
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
++.+.++|++.|=+++..... -+|= +.+-.+.++.+.+.. +.++.+...+| .+.++++.++|+.
T Consensus 25 ~~~L~~~GV~~IEvg~~~~~~---~~p~-----~~~~~~~i~~l~~~~~~~~~~~l~~~~-------~~~i~~a~~~g~~ 89 (265)
T cd03174 25 AEALDEAGVDSIEVGSGASPK---AVPQ-----MEDDWEVLRAIRKLVPNVKLQALVRNR-------EKGIERALEAGVD 89 (265)
T ss_pred HHHHHHcCCCEEEeccCcCcc---cccc-----CCCHHHHHHHHHhccCCcEEEEEccCc-------hhhHHHHHhCCcC
Confidence 345667899999998755321 1121 122334445555544 67888888776 5667888899999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh-cccHHHHHHHHHHhHhcCCCEEEe
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-ALSLEESLRRSRAFADAGADVLFI 259 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~-~~~ldeAI~RakAy~eAGAD~Ifi 259 (456)
.|+|=+...+ -|..-+--.+.++..+++..+.+..++.|-.+.+.. +++.. ....++..+.++...++|+|.|.+
T Consensus 90 ~i~i~~~~s~---~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 90 EVRIFDSASE---THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL-EDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred EEEEEEecCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE-EeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 9999876532 222211113455667777666666665554433333 12322 256788888899999999999988
Q ss_pred c---cCCCHHHHHHHHHhCC-CCc-eeeeeeccCCCCCCCC---HHHHHhcCCCEEeccchHHH--HHHHHHHHHHHHHH
Q 012815 260 D---ALASKEEMKAFCEISP-LVP-KMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLIG--VSVRAMQDALTAIK 329 (456)
Q Consensus 260 e---~~~s~eei~~i~~~v~-~vP-~~~N~~~~~g~tp~lt---~~eL~elGv~~Vs~p~~ll~--aa~~A~~~~l~~i~ 329 (456)
. +.-+++++.++.+.+. ..| +++.+ +.+. +..+. .-+--++|+.+|--....+. +.-.++++.+..|.
T Consensus 166 ~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~-H~Hn-~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~ 243 (265)
T cd03174 166 KDTVGLATPEEVAELVKALREALPDVPLGL-HTHN-TLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALE 243 (265)
T ss_pred chhcCCcCHHHHHHHHHHHHHhCCCCeEEE-EeCC-CCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHH
Confidence 4 3456667666664321 122 33332 2211 12222 23344577777655444442 33444445444444
No 147
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.44 E-value=0.64 Score=46.96 Aligned_cols=136 Identities=21% Similarity=0.241 Sum_probs=87.1
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecc--hhhcccHHHHHHHH
Q 012815 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTD--SRQALSLEESLRRS 246 (456)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTD--A~~~~~ldeAI~Ra 246 (456)
-+++.+.++|++.|-.-|...--.-||.++. -++.++|+...++++++.. .-+|++--= ++. +.|++++-+
T Consensus 26 ~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~-~vtldem~~h~~aV~rg~~----~~~vv~DmPf~sy~--~~e~a~~na 98 (263)
T TIGR00222 26 SFAKLFADAGVDVILVGDSLGMVVLGHDSTL-PVTVADMIYHTAAVKRGAP----NCLIVTDLPFMSYA--TPEQALKNA 98 (263)
T ss_pred HHHHHHHHcCCCEEEECccHhHHhcCCCCCC-CcCHHHHHHHHHHHHhhCC----CceEEeCCCcCCCC--CHHHHHHHH
Confidence 3446777899999999887644445776643 4799999999999988753 233332211 121 368888888
Q ss_pred HHhHh-cCCCEEEeccCCCH-HHHHHHHHhCCCCcee-------eeeeccC-----CCCCCC------CHHHHHhcCCCE
Q 012815 247 RAFAD-AGADVLFIDALASK-EEMKAFCEISPLVPKM-------ANMLEGG-----GKTPIL------NPLELEELGFKL 306 (456)
Q Consensus 247 kAy~e-AGAD~Ifie~~~s~-eei~~i~~~v~~vP~~-------~N~~~~~-----g~tp~l------t~~eL~elGv~~ 306 (456)
..+.+ +||++|-+|+-... +.++.+.+. ++|++ .|....+ |+++.- ....|+++|...
T Consensus 99 ~rl~~eaGa~aVkiEgg~~~~~~i~~l~~~--gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ 176 (263)
T TIGR00222 99 ARVMQETGANAVKLEGGEWLVETVQMLTER--GVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQL 176 (263)
T ss_pred HHHHHHhCCeEEEEcCcHhHHHHHHHHHHC--CCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCE
Confidence 87666 99999999986332 334444443 36766 3322111 232210 146788999998
Q ss_pred EeccchH
Q 012815 307 VAYPLSL 313 (456)
Q Consensus 307 Vs~p~~l 313 (456)
+..+...
T Consensus 177 ivlE~vp 183 (263)
T TIGR00222 177 LVLECVP 183 (263)
T ss_pred EEEcCCc
Confidence 8887765
No 148
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=95.39 E-value=1.2 Score=44.39 Aligned_cols=166 Identities=19% Similarity=0.195 Sum_probs=98.0
Q ss_pred CCcEEEeCC--CCCC---CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCC
Q 012815 150 SIPVIGDGD--NGYG---NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD 224 (456)
Q Consensus 150 ~iPVIaD~D--tGYG---~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~d 224 (456)
++|+++-.+ ++|+ ........+++..+.||++|.+=.... . + ..++..+.++++++..++.|..
T Consensus 73 ~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~~g-----~-----~-~~~~~~~~~~~v~~~~~~~g~p 141 (267)
T PRK07226 73 DVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVNVG-----S-----E-TEAEMLEDLGEVAEECEEWGMP 141 (267)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEecC-----C-----h-hHHHHHHHHHHHHHHHHHcCCc
Confidence 355555444 4554 113344557888999999998854321 0 0 1345666777777777766778
Q ss_pred eEEEEecchhh---cccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCC-CCC-----
Q 012815 225 IVIVARTDSRQ---ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP-ILN----- 295 (456)
Q Consensus 225 fvIiARTDA~~---~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp-~lt----- 295 (456)
++++...|... ....++...-++...++|||.|-..-..+.+.++++++..+ +|+.+ . ||-.. .+.
T Consensus 142 l~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~~~~~l~~~~~~~~-ipV~a---~-GGi~~~~~~~~l~~ 216 (267)
T PRK07226 142 LLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTGDPESFREVVEGCP-VPVVI---A-GGPKTDTDREFLEM 216 (267)
T ss_pred EEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCCCHHHHHHHHHhCC-CCEEE---E-eCCCCCCHHHHHHH
Confidence 88876543311 11223434446778899999998765556778888887654 56432 2 34321 111
Q ss_pred HHHHHhcCCCEEeccchHHHH-HHHHHHHHHHHHHcC
Q 012815 296 PLELEELGFKLVAYPLSLIGV-SVRAMQDALTAIKGG 331 (456)
Q Consensus 296 ~~eL~elGv~~Vs~p~~ll~a-a~~A~~~~l~~i~~g 331 (456)
..++.+.|..-++.+..++.. -..++-.++.++.++
T Consensus 217 v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~~ 253 (267)
T PRK07226 217 VRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVHE 253 (267)
T ss_pred HHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHhC
Confidence 455678999988887776643 123333444444443
No 149
>PRK04302 triosephosphate isomerase; Provisional
Probab=95.35 E-value=0.66 Score=44.87 Aligned_cols=140 Identities=19% Similarity=0.189 Sum_probs=80.1
Q ss_pred HhccCCcEEEe-CCC-CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC
Q 012815 146 TQAVSIPVIGD-GDN-GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS 223 (456)
Q Consensus 146 ~ra~~iPVIaD-~Dt-GYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~ 223 (456)
++.+++||.+- .+. .+|- -.-...++++.++|++||.|-|.. ...+.+|..++++++.+. |-
T Consensus 52 ~~~~~i~v~aq~~~~~~~G~-~tg~~~~~~l~~~G~~~vii~~se-----------r~~~~~e~~~~v~~a~~~----Gl 115 (223)
T PRK04302 52 AEEVDIPVYAQHVDPVEPGS-HTGHILPEAVKDAGAVGTLINHSE-----------RRLTLADIEAVVERAKKL----GL 115 (223)
T ss_pred HHhcCCeEEeccCCCCCCCC-chhhhHHHHHHHcCCCEEEEeccc-----------cccCHHHHHHHHHHHHHC----CC
Confidence 33357898862 211 2341 122345788888999999885531 124556666676666543 43
Q ss_pred CeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC-----------CCHHHHHHHHHhCC----CCceeeeeeccC
Q 012815 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISP----LVPKMANMLEGG 288 (456)
Q Consensus 224 dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~-----------~s~eei~~i~~~v~----~vP~~~N~~~~~ 288 (456)
..++...+ .++++...+.|.|.|.++.. .+.+.+.++.+.+. .+|++ .++
T Consensus 116 ~~I~~v~~-----------~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi----~Gg 180 (223)
T PRK04302 116 ESVVCVNN-----------PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVL----CGA 180 (223)
T ss_pred eEEEEcCC-----------HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEE----EEC
Confidence 44443333 23455667889999987542 12455555443322 24443 233
Q ss_pred CCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 289 GKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 289 g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
|-.+.=..+++.+.|+.-|+.|..++.+
T Consensus 181 gI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 181 GISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 4322223466778999999999987754
No 150
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=95.32 E-value=1.1 Score=45.89 Aligned_cols=183 Identities=14% Similarity=0.121 Sum_probs=107.9
Q ss_pred HHHHHHhCCCcee---ecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEe
Q 012815 80 SLRQILELPGVHQ---GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (456)
Q Consensus 80 ~Lr~ll~~~~~lv---~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD 156 (456)
.|.+++.-.-|++ |.++.|+--|..+.++|. +++ +| .+..+.+++-..++.+...++.|+=++
T Consensus 3 ~l~~~lgi~~Pii~apM~~~s~~~la~avs~aGg-------lG~----l~---~~~~~~~~l~~~i~~~~~~t~~pfgvn 68 (307)
T TIGR03151 3 RLCDLLGIEYPIFQGGMAWVATGSLAAAVSNAGG-------LGI----IG---AGNAPPDVVRKEIRKVKELTDKPFGVN 68 (307)
T ss_pred hhhHHhCCCCCEEcCCCCCCCCHHHHHHHHhCCC-------cce----ec---cccCCHHHHHHHHHHHHHhcCCCcEEe
Confidence 4666665444553 446666555555555552 221 11 123467887777788877666675444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhc
Q 012815 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA 236 (456)
Q Consensus 157 ~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~ 236 (456)
.-.- .+ ...+.++.+.+.|+..|.+-- |+ | +++++++++. +..|++-...
T Consensus 69 ~~~~--~~-~~~~~~~~~~~~~v~~v~~~~-------g~-------p-~~~i~~lk~~---------g~~v~~~v~s--- 118 (307)
T TIGR03151 69 IMLL--SP-FVDELVDLVIEEKVPVVTTGA-------GN-------P-GKYIPRLKEN---------GVKVIPVVAS--- 118 (307)
T ss_pred eecC--CC-CHHHHHHHHHhCCCCEEEEcC-------CC-------c-HHHHHHHHHc---------CCEEEEEcCC---
Confidence 3211 11 234556667788998887611 11 2 3466666432 3455553322
Q ss_pred ccHHHHHHHHHHhHhcCCCEEEeccC---------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEE
Q 012815 237 LSLEESLRRSRAFADAGADVLFIDAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (456)
Q Consensus 237 ~~ldeAI~RakAy~eAGAD~Ifie~~---------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~V 307 (456)
++-++..+++|||.|.+++. ++.+.+.++.+.++ +|++++ ||-...-+..+.-++|..-|
T Consensus 119 ------~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~-iPviaa----GGI~~~~~~~~al~~GA~gV 187 (307)
T TIGR03151 119 ------VALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVS-IPVIAA----GGIADGRGMAAAFALGAEAV 187 (307)
T ss_pred ------HHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhC-CCEEEE----CCCCCHHHHHHHHHcCCCEe
Confidence 23467778899999999653 35677888888876 787654 34322123456666999999
Q ss_pred eccchHHHHH
Q 012815 308 AYPLSLIGVS 317 (456)
Q Consensus 308 s~p~~ll~aa 317 (456)
.++..++...
T Consensus 188 ~iGt~f~~t~ 197 (307)
T TIGR03151 188 QMGTRFLCAK 197 (307)
T ss_pred ecchHHhccc
Confidence 9998766554
No 151
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.30 E-value=0.75 Score=49.63 Aligned_cols=295 Identities=18% Similarity=0.200 Sum_probs=155.1
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchH-Hhhh-hcccCCCCCCCHHHHHHHHHHHHhc-cCCcEE--E
Q 012815 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFS-ISAA-RLALPDTGFISYGEMVDQGQLITQA-VSIPVI--G 155 (456)
Q Consensus 81 Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~a-vSas-~lG~PD~~~lt~~Eml~~~r~I~ra-~~iPVI--a 155 (456)
||+-+|+.....++..--..-|..+.++|++.|=++|.+ +-.+ +.-.|| -.|.+ +.+.+. .+.++. +
T Consensus 11 lRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~-----p~e~l---~~l~~~~~~~~l~~l~ 82 (448)
T PRK12331 11 LRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNED-----PWERL---RKIRKAVKKTKLQMLL 82 (448)
T ss_pred CCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCC-----HHHHH---HHHHHhCCCCEEEEEe
Confidence 444444432223333333344667788999999886322 1110 111223 23444 444443 245554 6
Q ss_pred eCCC--CCCC-HHH-HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCe-EEEEe
Q 012815 156 DGDN--GYGN-AMN-VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVAR 230 (456)
Q Consensus 156 D~Dt--GYG~-~~n-v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~df-vIiAR 230 (456)
=..+ ||.. +.+ +.+-+++..++|++-++|-|... + .+ .++.+++..++.|... +-+.=
T Consensus 83 r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~ln-----d--------~~----n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 83 RGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALN-----D--------VR----NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred ccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecC-----c--------HH----HHHHHHHHHHHcCCeEEEEEEe
Confidence 6655 6765 444 56778899999999999988742 1 11 2333344444444221 11233
Q ss_pred cchhhcccHHHHHHHHHHhHhcCCCEEEecc---CCCHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCH---HHHHhcC
Q 012815 231 TDSRQALSLEESLRRSRAFADAGADVLFIDA---LASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNP---LELEELG 303 (456)
Q Consensus 231 TDA~~~~~ldeAI~RakAy~eAGAD~Ifie~---~~s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~---~eL~elG 303 (456)
|++ ....++--++.++.+.++|||.|.+-- +-+++++.++.+.+. .+++++.+ +.+ .+..+.. -.--++|
T Consensus 146 t~~-p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~-H~H-nt~GlA~AN~laAieaG 222 (448)
T PRK12331 146 TTS-PVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEV-HTH-ATSGIAEMTYLKAIEAG 222 (448)
T ss_pred ecC-CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEE-Eec-CCCCcHHHHHHHHHHcC
Confidence 443 235677788999999999999999853 445566665554321 12233433 221 1223332 3445799
Q ss_pred CCEEeccchHH--HHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHcccccccCccccCCCCCCCCCc
Q 012815 304 FKLVAYPLSLI--GVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENGGSRDAFSG 381 (456)
Q Consensus 304 v~~Vs~p~~ll--~aa~~A~~~~l~~i~~g~~~~~~~~~~~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~ 381 (456)
+.+|-.....+ ++...++++.+..|...+.. ....++.+.++-.+ +.+..++|..... ... + +.
T Consensus 223 ad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~---tgidl~~L~~~~~~--~~~~r~~y~~~~~-~~~---~----~~- 288 (448)
T PRK12331 223 ADIIDTAISPFAGGTSQPATESMVAALQDLGYD---TGLDLEELSEIAEY--FNPIRDHYREEGI-LNP---K----VK- 288 (448)
T ss_pred CCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC---CCCCHHHHHHHHHH--HHHHHHHHHhhcc-CCc---c----cc-
Confidence 99886655433 55666667776667543222 12344444443322 4555566652110 000 0 00
Q ss_pred ceeeEEEEEEecCCCceeeccccCcccchhhhhhccccccccHHHHhhhhh
Q 012815 382 IWSRTLRVKITGRDGFEKLDVRIPAGFLDGITNVVPALGGVNLKELLNDAA 432 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (456)
+-|.. -+.-.||-|- +||+..+|...++.+++++.-
T Consensus 289 -----------~~~~~-v~~~~~PGG~---~snl~~ql~~~g~~~~~~~v~ 324 (448)
T PRK12331 289 -----------DVEPK-TLIYQVPGGM---LSNLLSQLKEQGAEDKYEEVL 324 (448)
T ss_pred -----------cCCcC-eeecCCCcch---HhHHHHHHHHCCcHhHHHHHH
Confidence 11111 1334578775 477778888887777766653
No 152
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=95.27 E-value=0.67 Score=45.03 Aligned_cols=121 Identities=18% Similarity=0.193 Sum_probs=73.8
Q ss_pred CCcEEEeCCCCCCCHHHH-----HHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCC
Q 012815 150 SIPVIGDGDNGYGNAMNV-----KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD 224 (456)
Q Consensus 150 ~iPVIaD~DtGYG~~~nv-----~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~d 224 (456)
.+++++++|.|......- ...++..++.||++|.+==.. |+.... ..+++.+.|++++++++..+-.
T Consensus 56 ~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~-----~~~~~~---~~~~~~~~i~~v~~~~~~~gl~ 127 (236)
T PF01791_consen 56 KVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINY-----GALGSG---NEDEVIEEIAAVVEECHKYGLK 127 (236)
T ss_dssp EEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEH-----HHHHTT---HHHHHHHHHHHHHHHHHTSEEE
T ss_pred ccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccc-----cccccc---cHHHHHHHHHHHHHHHhcCCcE
Confidence 588999999997765555 678899999999999773221 111100 1356778888888887754444
Q ss_pred eEEEEecchhhc---ccHHHHHHHHHHhHhcCCCEEEeccC-------CCHHHHHHHHHhCCCCc
Q 012815 225 IVIVARTDSRQA---LSLEESLRRSRAFADAGADVLFIDAL-------ASKEEMKAFCEISPLVP 279 (456)
Q Consensus 225 fvIiARTDA~~~---~~ldeAI~RakAy~eAGAD~Ifie~~-------~s~eei~~i~~~v~~vP 279 (456)
+++-.-...... ...+....-++...++|||.|=.... .+.+.++++++..+ +|
T Consensus 128 vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~-~p 191 (236)
T PF01791_consen 128 VILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAP-VP 191 (236)
T ss_dssp EEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHS-ST
T ss_pred EEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcC-CC
Confidence 444433222110 11223344567778999999988766 45566666666555 45
No 153
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=95.27 E-value=4.8 Score=42.48 Aligned_cols=225 Identities=10% Similarity=0.008 Sum_probs=135.6
Q ss_pred HHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcc--c----CCCCC-CCHHHHHHHHHHHHhcc
Q 012815 81 LRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLA--L----PDTGF-ISYGEMVDQGQLITQAV 149 (456)
Q Consensus 81 Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG--~----PD~~~-lt~~Eml~~~r~I~ra~ 149 (456)
|....+.+-.+-+.|+|+.-+++.+ |+..-+.|...+-+.....-| + ||... +....+...++.+++..
T Consensus 19 L~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a 98 (357)
T TIGR01520 19 FQYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHY 98 (357)
T ss_pred HHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHC
Confidence 3333344556889999999999876 556888887664332211112 3 44433 45556777888888888
Q ss_pred CCcEEEeCCCCCCCH-HHHHHHHHH----HHHhC---ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhh
Q 012815 150 SIPVIGDGDNGYGNA-MNVKRTVKG----YIKAG---FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKES 221 (456)
Q Consensus 150 ~iPVIaD~DtGYG~~-~nv~rtVk~----l~~AG---aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~ 221 (456)
++||..=.|+|.--. +.+.+.++. ++..| ...|.|... | .|.||-++.-+.+++-++..
T Consensus 99 ~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS-------~------lpfeENI~~TrevVe~Ah~~ 165 (357)
T TIGR01520 99 GVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLS-------E------EPIEENIEICVKYLKRMAKI 165 (357)
T ss_pred CCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCC-------C------CCHHHHHHHHHHHHHHHHHc
Confidence 999999999995311 223333322 22344 889988433 3 47788888888887766543
Q ss_pred CC----CeEEE-Eecchhh---------cccHHHHHHHHHHhHh-----cCCCEEEe-----ccCC-------CHHHHHH
Q 012815 222 GS----DIVIV-ARTDSRQ---------ALSLEESLRRSRAFAD-----AGADVLFI-----DALA-------SKEEMKA 270 (456)
Q Consensus 222 G~----dfvIi-ARTDA~~---------~~~ldeAI~RakAy~e-----AGAD~Ifi-----e~~~-------s~eei~~ 270 (456)
|. ++=.+ +..|... -..- +.|+.|.+ -|+|++-+ +|+. +.+.+++
T Consensus 166 GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdP----eeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~ 241 (357)
T TIGR01520 166 KMWLEIEIGITGGEEDGVDNSHMDAEALYTQP----EDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILAD 241 (357)
T ss_pred CCEEEEEecccCCccCCcccccccccccCCCH----HHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHH
Confidence 31 00011 1111100 0122 44566654 28898753 3432 3567777
Q ss_pred HH----HhCCCCc----eeeeeeccCCCCCCCCHHH---HHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 012815 271 FC----EISPLVP----KMANMLEGGGKTPILNPLE---LEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (456)
Q Consensus 271 i~----~~v~~vP----~~~N~~~~~g~tp~lt~~e---L~elGv~~Vs~p~~ll~aa~~A~~~~l~~ 327 (456)
+. +.++ +| .++ +++++. .++.++ .-++|++-|=+..-+..+.+.++++.+..
T Consensus 242 I~~~~~~~~~-vP~~~~~pL-VLHGgS---Gi~~e~i~kai~~GI~KINi~Tdl~~A~~~a~~~~~~~ 304 (357)
T TIGR01520 242 GQEYVSEKLG-LPAAKPLFF-VFHGGS---GSTKQEIKEALSYGVVKMNIDTDTQWAYWEGILNYYKN 304 (357)
T ss_pred HHHHHHHhcC-CCcCCCCcE-EEeCCC---CCCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHHh
Confidence 73 4443 55 222 345433 345554 45799999999999999999999998754
No 154
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=95.26 E-value=0.15 Score=50.48 Aligned_cols=161 Identities=23% Similarity=0.357 Sum_probs=98.5
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec---chHHhhhhcccCCCC-CCCHHH----HHHHHHHHHhcc
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS---GFSISAARLALPDTG-FISYGE----MVDQGQLITQAV 149 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vS---G~avSas~lG~PD~~-~lt~~E----ml~~~r~I~ra~ 149 (456)
-..||..++++.+++--++-..+||+..|+-|.|-++.= .+-+ .|+++.. ++.+.. +++.++.+--.+
T Consensus 10 ~~~~r~ti~~~s~iig~~~gTglsAkaeeagg~d~i~~~nsgr~r~----ag~~Sl~gLLa~~naN~~vld~a~e~lp~~ 85 (276)
T COG5564 10 VASFRYTIHKGSPIIGGGAGTGLSAKAEEAGGIDLIYIYNSGRYRM----AGRGSLAGLLAYGNANDIVLDMAREVLPVV 85 (276)
T ss_pred HHHHHHhhcCCCcccccccccchhhhhhhcCCceEEEEecCccccc----cccchhhhhhhccCccHHHHHHHHhhCCcc
Confidence 457999999999999999999999999999999987764 3332 3677653 555432 344444432222
Q ss_pred -CCcEEEeCCCCCCCHH-HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHH----HHHHHHHHHHhHhhCC
Q 012815 150 -SIPVIGDGDNGYGNAM-NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEA----VMRIKAAVDARKESGS 223 (456)
Q Consensus 150 -~iPVIaD~DtGYG~~~-nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~----v~kI~AA~~Ar~~~G~ 223 (456)
+.||.+-. +| -+|- ....-.+.+..+|..||+ -+| .||..+|.=-.+.||. -..|.-.++|-+ .
T Consensus 86 r~tpv~aGv-~~-~DPf~~~~~~L~~L~~~gf~gV~----NFP-Tv~~iDG~~R~~lEetGmG~~~Evemlr~A~~---k 155 (276)
T COG5564 86 RQTPVLAGV-NG-TDPFCRMVDFLKELKTAGFSGVQ----NFP-TVGLIDGRMRASLEETGMGYGLEVEMLREAHA---K 155 (276)
T ss_pred ccCcceecc-cC-CCcchhHHHHHHHHHhcCCcccc----cCC-eeEEecchhhhhHHHhCcchHHHHHHHHHHHh---c
Confidence 46666521 11 1342 233445778889999983 233 4777777544555552 222222333332 2
Q ss_pred CeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEecc
Q 012815 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (456)
Q Consensus 224 dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~ 261 (456)
|+.-.+-.+. .+.|++..+||||.|+.+.
T Consensus 156 ~l~t~~yV~s---------~~eAqa~~~aGadiiv~hm 184 (276)
T COG5564 156 DLLTTPYVFS---------FEEAQAMTKAGADIIVAHM 184 (276)
T ss_pred cccccceecC---------HHHHHHHHHcCcceeeecc
Confidence 4444443333 2457788899999999873
No 155
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.20 E-value=1.7 Score=38.83 Aligned_cols=171 Identities=18% Similarity=0.108 Sum_probs=90.4
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHH-HHHHHHHHHHHhCc
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM-NVKRTVKGYIKAGF 179 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~-nv~rtVk~l~~AGa 179 (456)
.++.+.+.|.+++.+...... ..+. . .... ...+.+++..++|++++.=.. +.. .....++.+.++|+
T Consensus 17 ~~~~~~~~G~~~v~~~~~~~~--~~~~--~-~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~g~ 85 (200)
T cd04722 17 LAKAAAEAGADAIIVGTRSSD--PEEA--E-TDDK----EVLKEVAAETDLPLGVQLAIN--DAAAAVDIAAAAARAAGA 85 (200)
T ss_pred HHHHHHcCCCCEEEEeeEEEC--cccC--C-Cccc----cHHHHHHhhcCCcEEEEEccC--CchhhhhHHHHHHHHcCC
Confidence 345566678888777632211 1111 1 1110 345566667789998876332 222 22233678889999
Q ss_pred cEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEe
Q 012815 180 AGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (456)
Q Consensus 180 aGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifi 259 (456)
++|+|-.. |++. .+...+-++++++.. +++.+..+...... .+++ . +.++|+|.|.+
T Consensus 86 d~v~l~~~-----~~~~-------~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~--~~~~----~-~~~~g~d~i~~ 142 (200)
T cd04722 86 DGVEIHGA-----VGYL-------AREDLELIRELREAV----PDVKVVVKLSPTGE--LAAA----A-AEEAGVDEVGL 142 (200)
T ss_pred CEEEEecc-----CCcH-------HHHHHHHHHHHHHhc----CCceEEEEECCCCc--cchh----h-HHHcCCCEEEE
Confidence 99999665 2221 222333344443332 35677777654321 1111 1 67889999988
Q ss_pred ccCCC-----------HHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEecc
Q 012815 260 DALAS-----------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (456)
Q Consensus 260 e~~~s-----------~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p 310 (456)
..... ...++.+.+.. .+|++++ +|-++.-+..++.+.|...|..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pi~~~----GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 143 GNGGGGGGGRDAVPIADLLLILAKRGS-KVPVIAG----GGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred cCCcCCCCCccCchhHHHHHHHHHhcC-CCCEEEE----CCCCCHHHHHHHHHhCCCEEEec
Confidence 65311 12233333333 3665543 34332234577777898888765
No 156
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=95.17 E-value=3.1 Score=41.65 Aligned_cols=88 Identities=13% Similarity=0.198 Sum_probs=62.6
Q ss_pred HHHHHHHhCCCcee--ecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEe
Q 012815 79 KSLRQILELPGVHQ--GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv--~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD 156 (456)
..|++.+..+++++ .....++..+.++..+|||.+++=- . +| .++++++.+.++++ +..+++.+|=
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v~iD~-E-----Hg-----~~~~~~~~~~i~a~-~~~g~~~lVR 75 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLGLAGFDWLVLDG-E-----HA-----PNDVSTFIPQLMAL-KGSASAPVVR 75 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEcc-c-----cC-----CCCHHHHHHHHHHH-hhcCCCcEEE
Confidence 35899999888753 3456788999999999999999752 1 22 45667776666654 5566777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 157 GDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 157 ~DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
.+.. + ...+++..++|+.||.+
T Consensus 76 vp~~--~----~~~i~r~LD~Ga~giiv 97 (256)
T PRK10558 76 VPTN--E----PVIIKRLLDIGFYNFLI 97 (256)
T ss_pred CCCC--C----HHHHHHHhCCCCCeeee
Confidence 6654 3 34456777899999966
No 157
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.15 E-value=2.4 Score=42.54 Aligned_cols=175 Identities=21% Similarity=0.225 Sum_probs=107.4
Q ss_pred HHHHHHhCCcEEEec-chHHhhhhcccCCC------------CCCCHHHHHHHHHHHH-hccCCcEEEeCCCCCCCHH--
Q 012815 102 AKLVEKSGFSFCFTS-GFSISAARLALPDT------------GFISYGEMVDQGQLIT-QAVSIPVIGDGDNGYGNAM-- 165 (456)
Q Consensus 102 Arl~e~aGfdAI~vS-G~avSas~lG~PD~------------~~lt~~Eml~~~r~I~-ra~~iPVIaD~DtGYG~~~-- 165 (456)
++.+++.|+|.|=++ -+. -.+-|+ .-+++++.++.++.++ +..++|+++- +|-|+.
T Consensus 32 ~~~l~~~Gad~iElGiPfS-----DP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm---~Y~N~i~~ 103 (258)
T PRK13111 32 IKALVEAGADIIELGIPFS-----DPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLM---TYYNPIFQ 103 (258)
T ss_pred HHHHHHCCCCEEEECCCCC-----CCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE---ecccHHhh
Confidence 344667899988876 221 122222 1357888999999998 5568998853 677752
Q ss_pred -HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEE-EEecchhhcccHHHHH
Q 012815 166 -NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VARTDSRQALSLEESL 243 (456)
Q Consensus 166 -nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvI-iARTDA~~~~~ldeAI 243 (456)
.+.+.++++.++|++|+.|-|= |.||..+-+.++ ++.|-+.+. ++=|.. -
T Consensus 104 ~G~e~f~~~~~~aGvdGviipDL---------------p~ee~~~~~~~~----~~~gl~~I~lvap~t~---------~ 155 (258)
T PRK13111 104 YGVERFAADAAEAGVDGLIIPDL---------------PPEEAEELRAAA----KKHGLDLIFLVAPTTT---------D 155 (258)
T ss_pred cCHHHHHHHHHHcCCcEEEECCC---------------CHHHHHHHHHHH----HHcCCcEEEEeCCCCC---------H
Confidence 3567788999999999999662 445443333333 334555555 444332 2
Q ss_pred HHHHHhHhcCCCEEEeccC-----------CC-HHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 244 RRSRAFADAGADVLFIDAL-----------AS-KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~-----------~s-~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
+|.+.+.+..-+.||+.+. .. .+.++++.+.. .+|+++ .+ |-...-...++.+. ..-|+.|+
T Consensus 156 eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~v---Gf-GI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 156 ERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT-DLPVAV---GF-GISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEEE---Ec-ccCCHHHHHHHHHh-CCEEEEcH
Confidence 6788888887788876321 11 23455555544 367654 23 32111245666765 89999999
Q ss_pred hHHHHHH
Q 012815 312 SLIGVSV 318 (456)
Q Consensus 312 ~ll~aa~ 318 (456)
.+.+..-
T Consensus 230 aiv~~~~ 236 (258)
T PRK13111 230 ALVKIIE 236 (258)
T ss_pred HHHHHHH
Confidence 8776553
No 158
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.10 E-value=0.8 Score=42.95 Aligned_cols=153 Identities=21% Similarity=0.206 Sum_probs=86.0
Q ss_pred HHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEE
Q 012815 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGII 183 (456)
Q Consensus 104 l~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~ 183 (456)
.+.++|++.+.+- .+|.....+.+.+..++.+++..++|++++ ..++.+.++|++|||
T Consensus 29 ~~~~~gv~~v~lr----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~a~~~gad~vh 86 (212)
T PRK00043 29 AALEGGVTLVQLR----------EKGLDTRERLELARALKELCRRYGVPLIVN------------DRVDLALAVGADGVH 86 (212)
T ss_pred HHHhcCCCEEEEe----------CCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------ChHHHHHHcCCCEEe
Confidence 3555687776442 333222222233444555666678899885 134677889999999
Q ss_pred eCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC-
Q 012815 184 LEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL- 262 (456)
Q Consensus 184 IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~- 262 (456)
+.... + +.. ...++ . +.+..+-.-+ +.. +.++...+.|||.|.+..+
T Consensus 87 ~~~~~------~-------~~~-~~~~~------~---~~~~~~g~~~-----~t~----~e~~~a~~~gaD~v~~~~~~ 134 (212)
T PRK00043 87 LGQDD------L-------PVA-DARAL------L---GPDAIIGLST-----HTL----EEAAAALAAGADYVGVGPIF 134 (212)
T ss_pred cCccc------C-------CHH-HHHHH------c---CCCCEEEEeC-----CCH----HHHHHHhHcCCCEEEECCcc
Confidence 96532 0 111 11111 1 2233332222 122 2345555789999986321
Q ss_pred -----------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 263 -----------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 263 -----------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
...+.++++++.++.+|+.+ .||-++ -+..++.+.|+..+..+..++.
T Consensus 135 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a----~GGI~~-~~i~~~~~~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 135 PTPTKKDAKAPQGLEGLREIRAAVGDIPIVA----IGGITP-ENAPEVLEAGADGVAVVSAITG 193 (212)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHhcCCCCEEE----ECCcCH-HHHHHHHHcCCCEEEEeHHhhc
Confidence 11567888887765456542 234432 3567889999999999887664
No 159
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=95.10 E-value=1.5 Score=44.20 Aligned_cols=175 Identities=15% Similarity=0.236 Sum_probs=105.8
Q ss_pred HHHHHHhCCcEEEec-chHHhhhhcccCCC------------CCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHH---
Q 012815 102 AKLVEKSGFSFCFTS-GFSISAARLALPDT------------GFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM--- 165 (456)
Q Consensus 102 Arl~e~aGfdAI~vS-G~avSas~lG~PD~------------~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~--- 165 (456)
++.+++.|+|.+=++ -+. -.+.|+ ..+++++.++.++.+.+..++|++. .+|-|+.
T Consensus 35 ~~~l~~~Gad~iElGiPfS-----DP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vl---m~Y~N~i~~~ 106 (263)
T CHL00200 35 LKILDKKGADIIELGIPYS-----DPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVI---FTYYNPVLHY 106 (263)
T ss_pred HHHHHHCCCCEEEECCCCC-----CCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE---EecccHHHHh
Confidence 455677899998876 211 112221 2468888999999998777899763 5788862
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHH
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~R 245 (456)
.+-+-++.+.++|++|+.|=|- |.||..+-+.++++. |-+++...--... .+|
T Consensus 107 G~e~F~~~~~~aGvdgviipDL---------------P~ee~~~~~~~~~~~----gi~~I~lv~PtT~--------~er 159 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDL---------------PYEESDYLISVCNLY----NIELILLIAPTSS--------KSR 159 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCC---------------CHHHHHHHHHHHHHc----CCCEEEEECCCCC--------HHH
Confidence 3567789999999999999874 345544443333332 4444444332221 267
Q ss_pred HHHhHhcCCCEEEe---ccCCC-----HHHHHHHH----HhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchH
Q 012815 246 SRAFADAGADVLFI---DALAS-----KEEMKAFC----EISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (456)
Q Consensus 246 akAy~eAGAD~Ifi---e~~~s-----~eei~~i~----~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~l 313 (456)
.+.+.+..-..||+ .+++- .++++++. +... .|+.+ .+ |-...=+.+++.+.|..-|+.|+.+
T Consensus 160 i~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~-~Pi~v---GF-GI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 160 IQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTN-KPIIL---GF-GISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred HHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcC-CCEEE---EC-CcCCHHHHHHHHhcCCCEEEECHHH
Confidence 77777775546665 33211 13333333 3333 56543 23 3221124567888999999999988
Q ss_pred HHH
Q 012815 314 IGV 316 (456)
Q Consensus 314 l~a 316 (456)
+..
T Consensus 235 v~~ 237 (263)
T CHL00200 235 VQI 237 (263)
T ss_pred HHH
Confidence 654
No 160
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=95.01 E-value=0.7 Score=48.55 Aligned_cols=152 Identities=22% Similarity=0.296 Sum_probs=87.8
Q ss_pred HHHHHHHHHhCccEEEeCC---CC---------CCCCccCCCCccccCHHHHHHH-HHHHHHHhHhhCCCeEEEEecchh
Q 012815 168 KRTVKGYIKAGFAGIILED---QV---------SPKGCGHTRGRKVVSREEAVMR-IKAAVDARKESGSDIVIVARTDSR 234 (456)
Q Consensus 168 ~rtVk~l~~AGaaGI~IED---q~---------~pK~CGH~~gk~lvp~ee~v~k-I~AA~~Ar~~~G~dfvIiARTDA~ 234 (456)
.+++++..+||.+||.|-- +. ..||.-.-+| .+...-.++-. |+++++ ..|++|.|-.|....
T Consensus 153 ~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGG-slenR~rf~~eii~~vr~---~~g~~f~v~vri~~~ 228 (382)
T cd02931 153 GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGG-SLENRLRFAIEIVEEIKA---RCGEDFPVSLRYSVK 228 (382)
T ss_pred HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCC-CHHHHhHHHHHHHHHHHH---hcCCCceEEEEEech
Confidence 4455667789999998865 21 1355444333 22222222222 222222 246788888885431
Q ss_pred ------------------hcccHHHHHHHHHHhHhcCCCEEEeccC---------CC--------HHHHHHHHHhCCCCc
Q 012815 235 ------------------QALSLEESLRRSRAFADAGADVLFIDAL---------AS--------KEEMKAFCEISPLVP 279 (456)
Q Consensus 235 ------------------~~~~ldeAI~RakAy~eAGAD~Ifie~~---------~s--------~eei~~i~~~v~~vP 279 (456)
....++|+++-++.+.++|+|.|=+.+- +. ...++++.+.+. +|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-~p 307 (382)
T cd02931 229 SYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVD-VP 307 (382)
T ss_pred hhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCC-CC
Confidence 1235799999999999999999977531 10 234566666665 78
Q ss_pred eeeeeeccCCC-CCCCCHHH-HHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCCCC
Q 012815 280 KMANMLEGGGK-TPILNPLE-LEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRIP 334 (456)
Q Consensus 280 ~~~N~~~~~g~-tp~lt~~e-L~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~~g~~~ 334 (456)
+++| ++- +|. +.++ |++-++..|.++-.++.- -+..+.+++|+..
T Consensus 308 vi~~----G~i~~~~-~~~~~l~~g~~D~V~~gR~~lad-----P~l~~k~~~g~~~ 354 (382)
T cd02931 308 VIMA----GRMEDPE-LASEAINEGIADMISLGRPLLAD-----PDVVNKIRRGRFK 354 (382)
T ss_pred EEEe----CCCCCHH-HHHHHHHcCCCCeeeechHhHhC-----ccHHHHHHcCCcc
Confidence 7754 221 121 1233 555558888887654443 3556667777643
No 161
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=94.92 E-value=0.35 Score=47.79 Aligned_cols=102 Identities=14% Similarity=0.241 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHH
Q 012815 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (456)
Q Consensus 134 t~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~A 213 (456)
..+.+.+.++.+. ..++||++=+--|+. ..+....++.++++|+++|+|. +..+ |++-. ..+.|+.
T Consensus 119 dp~~l~~iv~av~-~~~~PVsvKiR~~~~-~~~~~~~a~~l~~aGad~i~Vd-~~~~-------g~~~a----~~~~I~~ 184 (231)
T TIGR00736 119 NKELLKEFLTKMK-ELNKPIFVKIRGNCI-PLDELIDALNLVDDGFDGIHVD-AMYP-------GKPYA----DMDLLKI 184 (231)
T ss_pred CHHHHHHHHHHHH-cCCCcEEEEeCCCCC-cchHHHHHHHHHHcCCCEEEEe-eCCC-------CCchh----hHHHHHH
Confidence 4445555566665 348999999998863 3456688889999999999994 4221 11111 1233333
Q ss_pred HHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec
Q 012815 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (456)
Q Consensus 214 A~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie 260 (456)
++++. +++.|+|--|-.. .+.++.+.++|||+|.+-
T Consensus 185 i~~~~----~~ipIIgNGgI~s-------~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 185 LSEEF----NDKIIIGNNSIDD-------IESAKEMLKAGADFVSVA 220 (231)
T ss_pred HHHhc----CCCcEEEECCcCC-------HHHHHHHHHhCCCeEEEc
Confidence 33332 1467888777654 255666677899999873
No 162
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.91 E-value=0.78 Score=44.02 Aligned_cols=144 Identities=19% Similarity=0.176 Sum_probs=80.2
Q ss_pred HHHHHHhccCCcEEE----eCCCC---CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHH
Q 012815 141 QGQLITQAVSIPVIG----DGDNG---YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (456)
Q Consensus 141 ~~r~I~ra~~iPVIa----D~DtG---YG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~A 213 (456)
..+.|.+.+++|+++ |.|.. .|. -.+.++...++||+.|.+--... .... -...++++++
T Consensus 51 ~~~~i~~~~~iPil~~~~~~~~~~~~~ig~---~~~~~~~a~~aGad~I~~~~~~~-----~~p~--~~~~~~~i~~--- 117 (219)
T cd04729 51 DIRAIRARVDLPIIGLIKRDYPDSEVYITP---TIEEVDALAAAGADIIALDATDR-----PRPD--GETLAELIKR--- 117 (219)
T ss_pred HHHHHHHhCCCCEEEEEecCCCCCCceeCC---CHHHHHHHHHcCCCEEEEeCCCC-----CCCC--CcCHHHHHHH---
Confidence 334555557899985 55431 121 13466888899999887732210 0000 0122333333
Q ss_pred HHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec--c---------CCCHHHHHHHHHhCCCCceee
Q 012815 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID--A---------LASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 214 A~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie--~---------~~s~eei~~i~~~v~~vP~~~ 282 (456)
+++. + ++.++.-.. .. +++++..++|+|.+.+. + .++.+.++++.+.+. +|+++
T Consensus 118 ~~~~----g-~~~iiv~v~-----t~----~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~-ipvia 182 (219)
T cd04729 118 IHEE----Y-NCLLMADIS-----TL----EEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALG-IPVIA 182 (219)
T ss_pred HHHH----h-CCeEEEECC-----CH----HHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcC-CCEEE
Confidence 3322 3 344443221 22 34566778999998653 1 133567778877764 77664
Q ss_pred eeeccCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 283 NMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 283 N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
+ +|-...-+.+++.++|+.-|..+..+++.
T Consensus 183 ~----GGI~~~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 183 E----GRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred e----CCCCCHHHHHHHHHCCCCEEEEchHHhCh
Confidence 3 34221134577778999999999876654
No 163
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=94.90 E-value=3.8 Score=39.89 Aligned_cols=177 Identities=22% Similarity=0.254 Sum_probs=95.0
Q ss_pred ccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEe-----CCCCCCCH--HHH
Q 012815 95 ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD-----GDNGYGNA--MNV 167 (456)
Q Consensus 95 gayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD-----~DtGYG~~--~nv 167 (456)
++.+.-+|+.+++.|++-|=+-+ .++ ..|+.|--.++.. +.+..++||.+= .|+=|.+. ...
T Consensus 6 cv~s~~~a~~A~~~GAdRiELc~-~l~-------~GGlTPS~g~i~~---~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M 74 (201)
T PF03932_consen 6 CVESLEDALAAEAGGADRIELCS-NLE-------VGGLTPSLGLIRQ---AREAVDIPVHVMIRPRGGDFVYSDEEIEIM 74 (201)
T ss_dssp EESSHHHHHHHHHTT-SEEEEEB-TGG-------GT-B---HHHHHH---HHHHTTSEEEEE--SSSS-S---HHHHHHH
T ss_pred EeCCHHHHHHHHHcCCCEEEECC-Ccc-------CCCcCcCHHHHHH---HHhhcCCceEEEECCCCCCccCCHHHHHHH
Confidence 67899999999999999887654 111 1233232333333 333677887663 23336543 356
Q ss_pred HHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh-hcccHHHHHHHH
Q 012815 168 KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-QALSLEESLRRS 246 (456)
Q Consensus 168 ~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~-~~~~ldeAI~Ra 246 (456)
.+.++.+.++|++|+.+==- ..+|. ++.+ .++++ ++++. +-+ +..=| |+ ...+.+++++..
T Consensus 75 ~~dI~~~~~~GadG~VfG~L---~~dg~------iD~~-~~~~L---i~~a~--~~~-~tFHR--AfD~~~d~~~al~~L 136 (201)
T PF03932_consen 75 KEDIRMLRELGADGFVFGAL---TEDGE------IDEE-ALEEL---IEAAG--GMP-VTFHR--AFDEVPDPEEALEQL 136 (201)
T ss_dssp HHHHHHHHHTT-SEEEE--B---ETTSS------B-HH-HHHHH---HHHHT--TSE-EEE-G--GGGGSSTHHHHHHHH
T ss_pred HHHHHHHHHcCCCeeEEEeE---CCCCC------cCHH-HHHHH---HHhcC--CCe-EEEeC--cHHHhCCHHHHHHHH
Confidence 78889999999999987211 11233 3332 33333 33332 112 22333 22 234567787765
Q ss_pred HHhHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHh-cCCCEE
Q 012815 247 RAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEE-LGFKLV 307 (456)
Q Consensus 247 kAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~e-lGv~~V 307 (456)
.. .|.+-|+-.+- ...+.++++++...+ -+.++.++|-++ -+..+|.+ .|++-+
T Consensus 137 ~~---lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~---~i~Im~GgGv~~-~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 137 IE---LGFDRVLTSGGAPTALEGIENLKELVEQAKG---RIEIMPGGGVRA-ENVPELVEETGVREI 196 (201)
T ss_dssp HH---HT-SEEEESTTSSSTTTCHHHHHHHHHHHTT---SSEEEEESS--T-TTHHHHHHHHT-SEE
T ss_pred Hh---cCCCEEECCCCCCCHHHHHHHHHHHHHHcCC---CcEEEecCCCCH-HHHHHHHHhhCCeEE
Confidence 54 59999997652 456788888776432 245666656443 45677655 887754
No 164
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.88 E-value=1.1 Score=44.93 Aligned_cols=136 Identities=23% Similarity=0.239 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHh-CccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE-EecchhhcccHH
Q 012815 163 NAMNVKRTVKGYIKA-GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV-ARTDSRQALSLE 240 (456)
Q Consensus 163 ~~~nv~rtVk~l~~A-GaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi-ARTDA~~~~~ld 240 (456)
++.++.++++..-++ |-.=|+||=- .+.+-|.| +..+.|+|++.-.+ .+|.++ -=+|.
T Consensus 74 ta~eAv~~a~lare~~~~~~iKlEVi--------~d~~~Llp--d~~~tv~aa~~L~~---~Gf~vlpyc~dd------- 133 (248)
T cd04728 74 TAEEAVRTARLAREALGTDWIKLEVI--------GDDKTLLP--DPIETLKAAEILVK---EGFTVLPYCTDD------- 133 (248)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEe--------cCcccccc--CHHHHHHHHHHHHH---CCCEEEEEeCCC-------
Confidence 667777777666664 6677888753 22334554 34667777776655 478888 44554
Q ss_pred HHHHHHHHhHhcCCCEEEec--------cCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccch
Q 012815 241 ESLRRSRAFADAGADVLFID--------ALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (456)
Q Consensus 241 eAI~RakAy~eAGAD~Ifie--------~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ 312 (456)
+.-|++++++|+++|.+. ++.+.+.++.+.+..+ +|+++. ++=.+| -...+..++|+.-|..+..
T Consensus 134 --~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~-vpVI~e---gGI~tp-eda~~AmelGAdgVlV~SA 206 (248)
T cd04728 134 --PVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERAD-VPVIVD---AGIGTP-SDAAQAMELGADAVLLNTA 206 (248)
T ss_pred --HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCC-CcEEEe---CCCCCH-HHHHHHHHcCCCEEEEChH
Confidence 356899999999999762 3456788888888754 776543 322222 2346678899999999888
Q ss_pred HHH-----HHHHHHHHHH
Q 012815 313 LIG-----VSVRAMQDAL 325 (456)
Q Consensus 313 ll~-----aa~~A~~~~l 325 (456)
..+ ...+++.+++
T Consensus 207 It~a~dP~~ma~af~~Av 224 (248)
T cd04728 207 IAKAKDPVAMARAFKLAV 224 (248)
T ss_pred hcCCCCHHHHHHHHHHHH
Confidence 765 2344555443
No 165
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.86 E-value=1.8 Score=48.37 Aligned_cols=274 Identities=18% Similarity=0.161 Sum_probs=153.7
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCC--CCCC-HHH-HHHHHHHHHH
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-AMN-VKRTVKGYIK 176 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~Dt--GYG~-~~n-v~rtVk~l~~ 176 (456)
-|..++++||..+=+.|.+.--+.+++-. -+--|++...+.....+.+-.+.=.-+ ||++ +.| +...+++..+
T Consensus 31 ia~~~d~~g~~siE~~gGatfd~~~rfl~---edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~ 107 (596)
T PRK14042 31 ICNKMDDVGFWAMEVWGGATFDACLRFLK---EDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVN 107 (596)
T ss_pred HHHHHHhcCCCEEEeeCCcccceeecccC---CCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHH
Confidence 45667779999998874332112234422 244566666666554333334444444 7876 455 5557899999
Q ss_pred hCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE--ecchhhcccHHHHHHHHHHhHhcCC
Q 012815 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA--RTDSRQALSLEESLRRSRAFADAGA 254 (456)
Q Consensus 177 AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA--RTDA~~~~~ldeAI~RakAy~eAGA 254 (456)
.|++=+-|=|.. -+.+.+..-|++++++ |. .+..+ =|.+ ..+.++.-++-++.+.++||
T Consensus 108 ~Gidv~Rifd~l-------------nd~~n~~~~i~~~k~~----G~-~~~~~i~yt~s-p~~t~e~~~~~ak~l~~~Ga 168 (596)
T PRK14042 108 NGVDVFRVFDAL-------------NDARNLKVAIDAIKSH----KK-HAQGAICYTTS-PVHTLDNFLELGKKLAEMGC 168 (596)
T ss_pred cCCCEEEEcccC-------------cchHHHHHHHHHHHHc----CC-EEEEEEEecCC-CCCCHHHHHHHHHHHHHcCC
Confidence 999999998863 2333444444444433 42 22222 3333 24678888999999999999
Q ss_pred CEEEec---cCCCHHHHHHHHHhCCC-CceeeeeeccCCCCCCCCH---HHHHhcCCCEEeccchHH--HHHHHHHHHHH
Q 012815 255 DVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNP---LELEELGFKLVAYPLSLI--GVSVRAMQDAL 325 (456)
Q Consensus 255 D~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~lt~---~eL~elGv~~Vs~p~~ll--~aa~~A~~~~l 325 (456)
|.|.+- |+-.++++.++.+.+.. +++++.+ +.+ .+..+.. -.-.++|+++|=.....+ ++..-++++.+
T Consensus 169 d~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~-H~H-nt~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv 246 (596)
T PRK14042 169 DSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHL-HSH-STSGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALV 246 (596)
T ss_pred CEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEE-EeC-CCCCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHH
Confidence 999985 34455666655544221 2233432 221 2333433 445678999886654433 34455666666
Q ss_pred HHHHcCCCCCCCCCCCHHHHHHhcCcccHH-HHHHcccccccCccccCCCCCCCCCcceeeEEEEEEecCCCceeecccc
Q 012815 326 TAIKGGRIPSPGSMPSFQEIKETLGFNTYY-EEEKRYATSMRRLSSENGGSRDAFSGIWSRTLRVKITGRDGFEKLDVRI 404 (456)
Q Consensus 326 ~~i~~g~~~~~~~~~~~~e~~~lvg~~~~~-~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (456)
..|...+.. ....++.+.+ +.+|+ +..++|...+..... +-+ .. +.-.|
T Consensus 247 ~~L~~~g~~---tgidl~~l~~---~~~~~~~vr~~y~~~~~~~~~-------~~~----~v-------------~~hq~ 296 (596)
T PRK14042 247 AALTDTPYD---TELDLNILLE---IDDYFKAVRKKYSQFESEAQN-------IDP----RV-------------QLYQV 296 (596)
T ss_pred HHHHhcCCC---CCCCHHHHHH---HHHHHHHHHHHHhhcCCcccc-------CCc----ce-------------eecCC
Confidence 666543222 1233333333 34444 445667553322211 111 11 23468
Q ss_pred CcccchhhhhhccccccccHHHHhhhh
Q 012815 405 PAGFLDGITNVVPALGGVNLKELLNDA 431 (456)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (456)
|-|- +||+..+|...++.++++..
T Consensus 297 PGG~---~snl~~Ql~~~g~~d~~~ev 320 (596)
T PRK14042 297 PGGM---ISNLYNQLKEQNALDKMDAV 320 (596)
T ss_pred Ccch---hhHHHHHHHHCCcHhHHHHH
Confidence 8886 57888888888877777665
No 166
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=94.82 E-value=0.52 Score=45.94 Aligned_cols=144 Identities=19% Similarity=0.155 Sum_probs=84.6
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE
Q 012815 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (456)
Q Consensus 150 ~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA 229 (456)
.+-.++++|.|+.....-..-+++.++.||+.|-+==.. |+.... ..+...+-|++++++.. |..+.+|-
T Consensus 55 ~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~-----g~l~~g---~~~~v~~ei~~i~~~~~--g~~lKvIl 124 (211)
T TIGR00126 55 RICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINI-----GALKDG---NEEVVYDDIRAVVEACA--GVLLKVII 124 (211)
T ss_pred eEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecch-----HhhhCC---cHHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 345668999998776555555578888999998653222 221110 12556667777777764 34455544
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCCEE-----EeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCC
Q 012815 230 RTDSRQALSLEESLRRSRAFADAGADVL-----FIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGF 304 (456)
Q Consensus 230 RTDA~~~~~ldeAI~RakAy~eAGAD~I-----fie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv 304 (456)
=|..+.. ++.+.-++...++|||.| |..+-.+.++++.+.+.++. ++.+- ..||-...-...++-++|.
T Consensus 125 E~~~L~~---~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~-~v~IK--aaGGirt~~~a~~~i~aGa 198 (211)
T TIGR00126 125 ETGLLTD---EEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD-TIGVK--ASGGVRTAEDAIAMIEAGA 198 (211)
T ss_pred ecCCCCH---HHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc-CCeEE--EeCCCCCHHHHHHHHHHhh
Confidence 4433221 555666788889999999 44444566777777776653 33222 2233221122455667777
Q ss_pred CEEec
Q 012815 305 KLVAY 309 (456)
Q Consensus 305 ~~Vs~ 309 (456)
.|+-.
T Consensus 199 ~riGt 203 (211)
T TIGR00126 199 SRIGA 203 (211)
T ss_pred HHhCc
Confidence 76643
No 167
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=94.81 E-value=1.5 Score=42.87 Aligned_cols=168 Identities=20% Similarity=0.245 Sum_probs=98.8
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
.|+..++.|++-+++-=+. +. .|.+. ....+++|++.+.+||.++. |.-+ .+.++++..+||+
T Consensus 40 ~a~~~~~~g~~~l~i~DLd--~~-~~~~~--------n~~~i~~i~~~~~~~v~vgG--Gir~----~edv~~~l~~Ga~ 102 (233)
T cd04723 40 VARAYKELGFRGLYIADLD--AI-MGRGD--------NDEAIRELAAAWPLGLWVDG--GIRS----LENAQEWLKRGAS 102 (233)
T ss_pred HHHHHHHCCCCEEEEEeCc--cc-cCCCc--------cHHHHHHHHHhCCCCEEEec--CcCC----HHHHHHHHHcCCC
Confidence 5677788899999987443 11 24433 35677888888899999874 4444 5666788889998
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh--------cccHHHHHHHHHHhHhc
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ--------ALSLEESLRRSRAFADA 252 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~--------~~~ldeAI~RakAy~eA 252 (456)
=+.|--.. +.. +++.++ .+..+.+ .|+.--|... ...+.+.+++ |.+.
T Consensus 103 ~viigt~~------------~~~--~~~~~~------~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~---~~~~ 158 (233)
T cd04723 103 RVIVGTET------------LPS--DDDEDR------LAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRR---LAKW 158 (233)
T ss_pred eEEEccee------------ccc--hHHHHH------HHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHH---HHHh
Confidence 88772211 111 222221 1111211 2222223321 2235555554 4455
Q ss_pred CCCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 253 GADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 253 GAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
++.+.+-.+ ++.+.++++++..+ +|+.+ +||-...-..++|.++|+..|+.+..++.
T Consensus 159 -~~~li~~di~~~G~~~g~~~~~~~~i~~~~~-ipvi~----~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 159 -PEELIVLDIDRVGSGQGPDLELLERLAARAD-IPVIA----AGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred -CCeEEEEEcCccccCCCcCHHHHHHHHHhcC-CCEEE----eCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 665554433 45678889988765 66543 33433223457788999999999886654
No 168
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=94.78 E-value=0.41 Score=46.26 Aligned_cols=142 Identities=23% Similarity=0.294 Sum_probs=87.5
Q ss_pred HHHHHHHhccCCcEEEeCCCCCCCH----HHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHH
Q 012815 140 DQGQLITQAVSIPVIGDGDNGYGNA----MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (456)
Q Consensus 140 ~~~r~I~ra~~iPVIaD~DtGYG~~----~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~ 215 (456)
++++.|.+.+++|||.=.-..|.+. .-..+-|+.+.++|++-|-|.- +. ..++ .+.++++.+|+..
T Consensus 22 ~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa-T~-------R~Rp-~~l~~li~~i~~~- 91 (192)
T PF04131_consen 22 EDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA-TD-------RPRP-ETLEELIREIKEK- 91 (192)
T ss_dssp HHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE--SS-------SS-S-S-HHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec-CC-------CCCC-cCHHHHHHHHHHh-
Confidence 5678899999999997655555531 2356778899999999999944 31 1234 6778888877532
Q ss_pred HHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec------c----CCCHHHHHHHHHhCCCCceeeeee
Q 012815 216 DARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID------A----LASKEEMKAFCEISPLVPKMANML 285 (456)
Q Consensus 216 ~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie------~----~~s~eei~~i~~~v~~vP~~~N~~ 285 (456)
+ .+++|=+.. ++.++...++|+|+|=-- . .|+.+.++++++. . +|++ .
T Consensus 92 ------~--~l~MADist---------~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~-~pvI---a 149 (192)
T PF04131_consen 92 ------Y--QLVMADIST---------LEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-D-VPVI---A 149 (192)
T ss_dssp ------T--SEEEEE-SS---------HHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-T-SEEE---E
T ss_pred ------C--cEEeeecCC---------HHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-C-CcEe---e
Confidence 2 788887655 355777889999998632 1 2566788888875 3 5643 3
Q ss_pred ccCCCCCCCCH---HHHHhcCCCEEeccchHHHHH
Q 012815 286 EGGGKTPILNP---LELEELGFKLVAYPLSLIGVS 317 (456)
Q Consensus 286 ~~~g~tp~lt~---~eL~elGv~~Vs~p~~ll~aa 317 (456)
|+ +. .++ .+.-++|..-|..|...-+..
T Consensus 150 EG--ri--~tpe~a~~al~~GA~aVVVGsAITrP~ 180 (192)
T PF04131_consen 150 EG--RI--HTPEQAAKALELGAHAVVVGSAITRPQ 180 (192)
T ss_dssp ES--S----SHHHHHHHHHTT-SEEEE-HHHH-HH
T ss_pred cC--CC--CCHHHHHHHHhcCCeEEEECcccCCHH
Confidence 54 32 355 556679999999998766653
No 169
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.78 E-value=1.5 Score=49.04 Aligned_cols=291 Identities=19% Similarity=0.224 Sum_probs=151.1
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEEe--C
Q 012815 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGD--G 157 (456)
Q Consensus 81 Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIaD--~ 157 (456)
||+-+++.....++...-..-|..+.++|++.+=+.|.+...+.+.+ +. ++-.+..+.+++.. +.++.+= .
T Consensus 11 lRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rf-----l~-edp~e~l~~l~~~~~~~~l~~l~Rg 84 (592)
T PRK09282 11 LRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRY-----LN-EDPWERLRKLKKALPNTPLQMLLRG 84 (592)
T ss_pred CCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhccc-----CC-ccHHHHHHHHHHhCCCCEEEEEecc
Confidence 45555443323344443444566778899999987642211111111 11 12234555665553 4665544 4
Q ss_pred CC--CCCC-HHH-HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE---Ee
Q 012815 158 DN--GYGN-AMN-VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV---AR 230 (456)
Q Consensus 158 Dt--GYG~-~~n-v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi---AR 230 (456)
.+ ||.+ +.+ +...+++..++|++-++|-|... +.+ .++.+.+..++.| +.+. .=
T Consensus 85 ~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~ln-------------d~~----n~~~~i~~ak~~G--~~v~~~i~~ 145 (592)
T PRK09282 85 QNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALN-------------DVR----NMEVAIKAAKKAG--AHVQGTISY 145 (592)
T ss_pred ccccccccccchhhHHHHHHHHHCCCCEEEEEEecC-------------hHH----HHHHHHHHHHHcC--CEEEEEEEe
Confidence 44 6665 444 55678888999999999988751 112 3333333333334 2232 12
Q ss_pred cchhhcccHHHHHHHHHHhHhcCCCEEEec---cCCCHHHHHHHHHhCCC-CceeeeeeccCCCCCCCC---HHHHHhcC
Q 012815 231 TDSRQALSLEESLRRSRAFADAGADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELG 303 (456)
Q Consensus 231 TDA~~~~~ldeAI~RakAy~eAGAD~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~lt---~~eL~elG 303 (456)
|++ ..+.++..++-++...++|||.|.+- |.-.++++.++.+.+.. +++++.+ +.+ .+..+. .-.--+.|
T Consensus 146 t~~-p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~-H~H-nt~Gla~An~laAv~aG 222 (592)
T PRK09282 146 TTS-PVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQL-HSH-CTSGLAPMTYLKAVEAG 222 (592)
T ss_pred ccC-CCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEE-EEc-CCCCcHHHHHHHHHHhC
Confidence 222 23568888999999999999999885 34455666666654211 2223322 221 122333 34456789
Q ss_pred CCEEeccchH--HHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHcccccccCccccCCCCCCCCCc
Q 012815 304 FKLVAYPLSL--IGVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENGGSRDAFSG 381 (456)
Q Consensus 304 v~~Vs~p~~l--l~aa~~A~~~~l~~i~~g~~~~~~~~~~~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~ 381 (456)
++.|=..... -++...++++.+..|...+... ...++.+.++-.+ +.+..++|...+.....
T Consensus 223 ad~vD~ai~g~g~~agn~~~e~vv~~L~~~g~~~---~idl~~l~~~s~~--~~~~~~~y~~~~~~~~~----------- 286 (592)
T PRK09282 223 VDIIDTAISPLAFGTSQPPTESMVAALKGTPYDT---GLDLELLFEIAEY--FREVRKKYKQFESEFTI----------- 286 (592)
T ss_pred CCEEEeeccccCCCcCCHhHHHHHHHHHhCCCCC---ccCHHHHHHHHHH--HHHHHHHhhcCCCcccc-----------
Confidence 8887554332 2444555556655565432221 2333444333222 45555667553332221
Q ss_pred ceeeEEEEEEecCCCceeeccccCcccchhhhhhccccccccHHHHhhhh
Q 012815 382 IWSRTLRVKITGRDGFEKLDVRIPAGFLDGITNVVPALGGVNLKELLNDA 431 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (456)
.=++.|+=. ||-|- +||++.++.-.++.+++++.
T Consensus 287 ~~~~v~~~~-------------~pGg~---~snl~~q~~~~g~~d~~~~v 320 (592)
T PRK09282 287 VDTRVLIHQ-------------VPGGM---ISNLVSQLKEQNALDKLDEV 320 (592)
T ss_pred CCccEEEEc-------------CCCcH---HHHHHHHHHHCCcHHHHHHH
Confidence 001444443 44442 46777777766665555544
No 170
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.72 E-value=0.18 Score=50.52 Aligned_cols=137 Identities=26% Similarity=0.285 Sum_probs=85.7
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecc-hhhcccHHHHHHHHHH
Q 012815 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTD-SRQALSLEESLRRSRA 248 (456)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTD-A~~~~~ldeAI~RakA 248 (456)
..+.++++|+.+|-.-|...--..||.+. ..++.+|++..+++++++.. ..| |++=.. .....+.+++++++..
T Consensus 24 sA~l~e~aG~d~i~vGds~~~~~lG~pDt-~~vtl~em~~~~~~V~r~~~---~p~-viaD~~fg~y~~~~~~av~~a~r 98 (254)
T cd06557 24 TAKLADEAGVDVILVGDSLGMVVLGYDST-LPVTLDEMIYHTRAVRRGAP---RAL-VVADMPFGSYQTSPEQALRNAAR 98 (254)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHcCCCCC-CCcCHHHHHHHHHHHHhcCC---CCe-EEEeCCCCcccCCHHHHHHHHHH
Confidence 34667889999998766643334577653 47899999999999887753 234 445442 1123468999999776
Q ss_pred hHh-cCCCEEEeccCC-CHHHHHHHHHhCCCCcee---------eeeecc---CCCCCC------CCHHHHHhcCCCEEe
Q 012815 249 FAD-AGADVLFIDALA-SKEEMKAFCEISPLVPKM---------ANMLEG---GGKTPI------LNPLELEELGFKLVA 308 (456)
Q Consensus 249 y~e-AGAD~Ifie~~~-s~eei~~i~~~v~~vP~~---------~N~~~~---~g~tp~------lt~~eL~elGv~~Vs 308 (456)
..+ +||++|.+|+-. ..+.++.++++ ++|++ .|...+ .+++.. -....|+++|...+.
T Consensus 99 ~~~~aGa~aVkiEd~~~~~~~I~al~~a--gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~ 176 (254)
T cd06557 99 LMKEAGADAVKLEGGAEVAETIRALVDA--GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALV 176 (254)
T ss_pred HHHHhCCeEEEEcCcHHHHHHHHHHHHc--CCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEE
Confidence 666 999999999842 23344455443 24544 222210 122221 013567889988888
Q ss_pred ccchH
Q 012815 309 YPLSL 313 (456)
Q Consensus 309 ~p~~l 313 (456)
.+...
T Consensus 177 lE~v~ 181 (254)
T cd06557 177 LECVP 181 (254)
T ss_pred EcCCC
Confidence 86653
No 171
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=94.71 E-value=2.6 Score=44.30 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=87.2
Q ss_pred ccCChH-HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCC----CCC--HHHH
Q 012815 95 ACFDAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG----YGN--AMNV 167 (456)
Q Consensus 95 gayDal-SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtG----YG~--~~nv 167 (456)
+.+|+- .-+++.++|++++.+. .++.. .+.++.. .++|+|+-.+.+ |.+ ...+
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~-~G~l~--~~~~~~~-----------------~~iplIlkln~~t~l~~~~~~~~~l 148 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVAST-LGVLE--AVARKYA-----------------HKIPFILKLNHNELLSYPNTYDQAL 148 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeC-HHHHH--hcccccc-----------------CCCCEEEEeCCCCCCCCCCCCcccc
Confidence 455655 4455566789998887 22221 1222211 247777777765 333 2345
Q ss_pred HHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE--Eecchhhcc-----cHH
Q 012815 168 KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV--ARTDSRQAL-----SLE 240 (456)
Q Consensus 168 ~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi--ARTDA~~~~-----~ld 240 (456)
.-+|+..++.||+||.+-=-. ++. ...++++.+.++.+.+++.|-.+++. .|-...... ..+
T Consensus 149 ~~sVedAlrLGAdAV~~tvy~--------Gs~---~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d 217 (348)
T PRK09250 149 TASVEDALRLGAVAVGATIYF--------GSE---ESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAAD 217 (348)
T ss_pred eecHHHHHHCCCCEEEEEEec--------CCH---HHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHH
Confidence 667899999999998773221 110 12467888888888888877665553 343222111 123
Q ss_pred HHHHHHHHhHhcCCCEEEeccCCCHHHHHHH
Q 012815 241 ESLRRSRAFADAGADVLFIDALASKEEMKAF 271 (456)
Q Consensus 241 eAI~RakAy~eAGAD~Ifie~~~s~eei~~i 271 (456)
-.---++.-+|.|||.|=+.-+.+.+.+.++
T Consensus 218 ~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 218 LTGQANHLAATIGADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCChhhHHHh
Confidence 2333366677999999998877666666665
No 172
>PLN02858 fructose-bisphosphate aldolase
Probab=94.63 E-value=3.5 Score=50.36 Aligned_cols=207 Identities=15% Similarity=0.153 Sum_probs=130.6
Q ss_pred hCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCC
Q 012815 86 ELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGY 161 (456)
Q Consensus 86 ~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGY 161 (456)
+++--+-..|+||.-+++.+ |+.+.+.|..-+-... ...| ++ +...++..++..++||.+=.|+|.
T Consensus 1111 ~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~-~~~~--------~~-~~~~~~~~a~~~~vpV~lHLDHg~ 1180 (1378)
T PLN02858 1111 KGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGAL-KQGG--------IP-LVSCCIAAAEQASVPITVHFDHGT 1180 (1378)
T ss_pred HCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHH-hhcC--------HH-HHHHHHHHHHHCCCCEEEECCCCC
Confidence 34445889999999998865 6668998886643321 1122 33 566667777778999999999995
Q ss_pred CCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----CeEEEEe-cchhhc
Q 012815 162 GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVAR-TDSRQA 236 (456)
Q Consensus 162 G~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----dfvIiAR-TDA~~~ 236 (456)
+ .+.+++.+++|...|.|... | .|.||-+++-+.+++-++..|. ++=-++- .|....
T Consensus 1181 -~----~~~i~~ai~~Gf~SVM~DgS-------~------l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~ 1242 (1378)
T PLN02858 1181 -S----KHELLEALELGFDSVMVDGS-------H------LSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTV 1242 (1378)
T ss_pred -C----HHHHHHHHHhCCCEEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccc
Confidence 3 34456777789999999433 3 3778888888888887765331 0111111 111000
Q ss_pred ccHH---HHHHHHHHhHh-cCCCEEEe-----ccC-------CCHHHHHHHHHhCC--CCceeeeeeccCCCCCCCCHHH
Q 012815 237 LSLE---ESLRRSRAFAD-AGADVLFI-----DAL-------ASKEEMKAFCEISP--LVPKMANMLEGGGKTPILNPLE 298 (456)
Q Consensus 237 ~~ld---eAI~RakAy~e-AGAD~Ifi-----e~~-------~s~eei~~i~~~v~--~vP~~~N~~~~~g~tp~lt~~e 298 (456)
..-+ --.+.|+.|.+ -|+|++-+ |+. -+.+.+++|.+.++ .+|+. ++++..+|.-...+
T Consensus 1243 ~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLV---lHGgSG~~~~~~~~ 1319 (1378)
T PLN02858 1243 EEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLV---LHGASGLPESLIKE 1319 (1378)
T ss_pred cccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEE---EeCCCCCCHHHHHH
Confidence 0000 01245666774 69998754 332 13568888888873 25653 45533333222344
Q ss_pred HHhcCCCEEeccchHHHHHHHHHHH
Q 012815 299 LEELGFKLVAYPLSLIGVSVRAMQD 323 (456)
Q Consensus 299 L~elGv~~Vs~p~~ll~aa~~A~~~ 323 (456)
.-+.|++-|=+...+..+.++++++
T Consensus 1320 ai~~Gi~KiNi~T~~~~a~~~~~~~ 1344 (1378)
T PLN02858 1320 CIENGVRKFNVNTEVRTAYMEALSS 1344 (1378)
T ss_pred HHHcCCeEEEeCHHHHHHHHHHHhC
Confidence 4579999999999999988888763
No 173
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=94.63 E-value=0.94 Score=44.98 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=66.6
Q ss_pred HHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhH
Q 012815 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (456)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~ 250 (456)
++.++++|+.+|-+-|...--.+|+.+. ..++.+|++..+++++++.. ...|++=-|.-.....+++++=++.|.
T Consensus 25 A~i~e~aG~dai~v~~s~~a~~~G~pD~-~~vtl~em~~~~~~I~r~~~----~~pviaD~~~G~g~~~~~~~~~~~~l~ 99 (240)
T cd06556 25 AKQFADAGLNVMLVGDSQGMTVAGYDDT-LPYPVNDVPYHVRAVRRGAP----LALIVADLPFGAYGAPTAAFELAKTFM 99 (240)
T ss_pred HHHHHHcCCCEEEEChHHHHHhcCCCCC-CCcCHHHHHHHHHHHHhhCC----CCCEEEeCCCCCCcCHHHHHHHHHHHH
Confidence 4567789999999988754344576653 56899999999999887752 346666655543345588999999999
Q ss_pred hcCCCEEEeccC
Q 012815 251 DAGADVLFIDAL 262 (456)
Q Consensus 251 eAGAD~Ifie~~ 262 (456)
++||++|-+|.-
T Consensus 100 ~aGa~gv~iED~ 111 (240)
T cd06556 100 RAGAAGVKIEGG 111 (240)
T ss_pred HcCCcEEEEcCc
Confidence 999999999984
No 174
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=94.41 E-value=0.81 Score=46.82 Aligned_cols=115 Identities=20% Similarity=0.340 Sum_probs=77.2
Q ss_pred CCcEEEeCCCCCC--CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEE
Q 012815 150 SIPVIGDGDNGYG--NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI 227 (456)
Q Consensus 150 ~iPVIaD~DtGYG--~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvI 227 (456)
.+|+.+= .|++ .+..+.+.++++.+.|..+++| ++||..... -..+..+++|++++++. |+++.|
T Consensus 126 ~v~~~~~--~~~~~~~~~~~~~~a~~~~~~Gf~~~Ki-------k~g~~~~~~-~~~~~d~~~v~~ir~~~---g~~~~l 192 (357)
T cd03316 126 RVRVYAS--GGGYDDSPEELAEEAKRAVAEGFTAVKL-------KVGGPDSGG-EDLREDLARVRAVREAV---GPDVDL 192 (357)
T ss_pred ceeeEEe--cCCCCCCHHHHHHHHHHHHHcCCCEEEE-------cCCCCCcch-HHHHHHHHHHHHHHHhh---CCCCEE
Confidence 3565442 3444 4677888889999999999999 234421000 01344577777776654 567766
Q ss_pred EEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCCCCceee
Q 012815 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 228 iARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~ 282 (456)
.. |+.....+++|++-++++.+.| ..|+|-+ .+.+.++++.+..+ +|+.+
T Consensus 193 ~v--DaN~~~~~~~a~~~~~~l~~~~--i~~iEqP~~~~~~~~~~~l~~~~~-ipi~~ 245 (357)
T cd03316 193 MV--DANGRWDLAEAIRLARALEEYD--LFWFEEPVPPDDLEGLARLRQATS-VPIAA 245 (357)
T ss_pred EE--ECCCCCCHHHHHHHHHHhCccC--CCeEcCCCCccCHHHHHHHHHhCC-CCEEe
Confidence 44 7766778899999999998875 4577754 24678888888766 67654
No 175
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=94.41 E-value=2.9 Score=40.20 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=91.0
Q ss_pred HHHHHHhccCCcEEEeCCCCCCCH-HHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 141 QGQLITQAVSIPVIGDGDNGYGNA-MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtGYG~~-~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
.++.+.+. +.|+++|.=.+ +. ..+.+.++.+.++||+.+.+--.. | .+.|++++++.+
T Consensus 41 ~v~~l~~~-~~~v~lD~K~~--Dig~t~~~~~~~~~~~gad~vTvh~~~---------g---------~~~l~~~~~~~~ 99 (213)
T TIGR01740 41 IIDELAKL-NKLIFLDLKFA--DIPNTVKLQYESKIKQGADMVNVHGVA---------G---------SESVEAAKEAAS 99 (213)
T ss_pred HHHHHHHc-CCCEEEEEeec--chHHHHHHHHHHHHhcCCCEEEEcCCC---------C---------HHHHHHHHHHhh
Confidence 34444443 35899998665 32 356667777889999999884321 1 223555665554
Q ss_pred hhCCCeEEEEecchhhc----ccH-HHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCC--
Q 012815 220 ESGSDIVIVARTDSRQA----LSL-EESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP-- 292 (456)
Q Consensus 220 ~~G~dfvIiARTDA~~~----~~l-deAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp-- 292 (456)
+.|+..++++.+-+... ..+ +..+++++.+.++|.+.++ .+.+++..+.+..+. ++-++ ||-.+
T Consensus 100 ~~~~~v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v----~~~~~~~~ir~~~~~---~~~vt--PGI~~~g 170 (213)
T TIGR01740 100 EGGRGLLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPV----CSAEEAKEIRKFTGD---FLILT--PGIRLQS 170 (213)
T ss_pred cCCCeEEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEE----eCHHHHHHHHHhcCC---ceEEe--CCcCCCC
Confidence 44566777776554321 233 6788999999999999875 345677777665432 11122 12111
Q ss_pred --------CCCHHHHHhcCCCEEeccchHHH
Q 012815 293 --------ILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 293 --------~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
..+++++.+.|+..++.|..++.
T Consensus 171 ~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~ 201 (213)
T TIGR01740 171 KGADDQQRVVTLEDAKEAGADVIIVGRGIYA 201 (213)
T ss_pred CCcCCccccCCHHHHHHcCCCEEEEChhhcC
Confidence 23568999999999999877664
No 176
>PRK15452 putative protease; Provisional
Probab=94.40 E-value=2.6 Score=45.53 Aligned_cols=146 Identities=11% Similarity=0.016 Sum_probs=94.0
Q ss_pred cCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCC--HHHHHHHHHH
Q 012815 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN--AMNVKRTVKG 173 (456)
Q Consensus 96 ayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~--~~nv~rtVk~ 173 (456)
|-|.-+++.+-++|+|+||+++-..++ . +.....+.+|+.+.++. ++..++.|.+=...=..+ ...+.+.++.
T Consensus 10 ag~~e~l~aAi~~GADaVY~G~~~~~~-R---~~~~~f~~edl~eav~~-ah~~g~kvyvt~n~i~~e~el~~~~~~l~~ 84 (443)
T PRK15452 10 AGTLKNMRYAFAYGADAVYAGQPRYSL-R---VRNNEFNHENLALGINE-AHALGKKFYVVVNIAPHNAKLKTFIRDLEP 84 (443)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCccch-h---hhccCCCHHHHHHHHHH-HHHcCCEEEEEecCcCCHHHHHHHHHHHHH
Confidence 445555566778999999998654432 1 11244577776555443 344444444433332222 3467777888
Q ss_pred HHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcC
Q 012815 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (456)
Q Consensus 174 l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAG 253 (456)
+.++|++||.+-|-- -+..+++ ..+++-|.+-|....-.. .-++.|.+.|
T Consensus 85 l~~~gvDgvIV~d~G---------------------~l~~~ke----~~p~l~ih~stqlni~N~-----~a~~f~~~lG 134 (443)
T PRK15452 85 VIAMKPDALIMSDPG---------------------LIMMVRE----HFPEMPIHLSVQANAVNW-----ATVKFWQQMG 134 (443)
T ss_pred HHhCCCCEEEEcCHH---------------------HHHHHHH----hCCCCeEEEEecccCCCH-----HHHHHHHHCC
Confidence 889999999997731 1122222 246888999887754332 4578889999
Q ss_pred CCEEEeccCCCHHHHHHHHHhCC
Q 012815 254 ADVLFIDALASKEEMKAFCEISP 276 (456)
Q Consensus 254 AD~Ifie~~~s~eei~~i~~~v~ 276 (456)
++-+++.---+.+|++.+.+..+
T Consensus 135 ~~rvvLSrELsl~EI~~i~~~~~ 157 (443)
T PRK15452 135 LTRVILSRELSLEEIEEIRQQCP 157 (443)
T ss_pred CcEEEECCcCCHHHHHHHHhhCC
Confidence 99999877567889999986543
No 177
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=94.39 E-value=1.9 Score=42.17 Aligned_cols=131 Identities=17% Similarity=0.241 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHH
Q 012815 136 GEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (456)
Q Consensus 136 ~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~ 215 (456)
.++...++.+++..++|++++-+ +....+.|++||||-... .+..+
T Consensus 57 ~~~a~~l~~l~~~~gv~liINd~------------~dlA~~~~adGVHLg~~d-------------~~~~~--------- 102 (221)
T PRK06512 57 QKQAEKLVPVIQEAGAAALIAGD------------SRIAGRVKADGLHIEGNL-------------AALAE--------- 102 (221)
T ss_pred HHHHHHHHHHHHHhCCEEEEeCH------------HHHHHHhCCCEEEECccc-------------cCHHH---------
Confidence 34455566677778899999721 334456899999995321 12221
Q ss_pred HHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC----------CCHHHHHHHHHhCCCCceeeeee
Q 012815 216 DARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL----------ASKEEMKAFCEISPLVPKMANML 285 (456)
Q Consensus 216 ~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~----------~s~eei~~i~~~v~~vP~~~N~~ 285 (456)
+++..+++ .+++-+-.. ..+++.+ ..+.|||.|.+-.+ ...+.++++++.+. +|+.+ +
T Consensus 103 -~r~~~~~~-~iiG~s~~~---s~~~a~~----A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~-iPvvA--I 170 (221)
T PRK06512 103 -AIEKHAPK-MIVGFGNLR---DRHGAME----IGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIE-IPCIV--Q 170 (221)
T ss_pred -HHHhcCCC-CEEEecCCC---CHHHHHH----hhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCC-CCEEE--E
Confidence 22223444 456664211 1233322 34699999977332 12456777777665 67542 2
Q ss_pred ccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 286 EGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 286 ~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
||-++ -+..++.+.|...|..-..++.
T Consensus 171 --GGI~~-~n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 171 --AGSDL-ASAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred --eCCCH-HHHHHHHHhCCCEEEEhHHhhC
Confidence 34322 2457788999988877655543
No 178
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=94.28 E-value=1.3 Score=45.85 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhCccEEEeCCCC-----------CCCCccCCCCccccCHHHHHHH-HHHHHHHhHhhCCCeEEEEecch
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQV-----------SPKGCGHTRGRKVVSREEAVMR-IKAAVDARKESGSDIVIVARTDS 233 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~-----------~pK~CGH~~gk~lvp~ee~v~k-I~AA~~Ar~~~G~dfvIiARTDA 233 (456)
...+++++..++|++||.|--.- ..||--.-+|. +.-.-.++.. |++++++ .|.|+ |..|.-.
T Consensus 153 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGs-lenR~rf~~eii~air~~---vg~d~-v~vRis~ 227 (338)
T cd02933 153 DFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGS-IENRARFLLEVVDAVAEA---IGADR-VGIRLSP 227 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCc-HHHhhhHHHHHHHHHHHH---hCCCc-eEEEECc
Confidence 34566788889999999996432 12333222332 3222223322 2333322 35564 7778654
Q ss_pred hh-------cccHHHHHHHHHHhHhcCCCEEEe-ccC-------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHH
Q 012815 234 RQ-------ALSLEESLRRSRAFADAGADVLFI-DAL-------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE 298 (456)
Q Consensus 234 ~~-------~~~ldeAI~RakAy~eAGAD~Ifi-e~~-------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~e 298 (456)
.. ...++|.++-++...++|+|.|=+ .+. ...+.++++.+.++ +|++++ ++-+|. ..++
T Consensus 228 ~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~-ipvi~~----G~i~~~-~a~~ 301 (338)
T cd02933 228 FGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFK-GPLIAA----GGYDAE-SAEA 301 (338)
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcC-CCEEEE----CCCCHH-HHHH
Confidence 21 236799999999999999999977 332 23345667777776 787654 232221 2333
Q ss_pred -HHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 012815 299 -LEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (456)
Q Consensus 299 -L~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~~g~ 332 (456)
|++-++..|.++-.++.-- +....+++|+
T Consensus 302 ~l~~g~~D~V~~gR~~ladP-----~~~~k~~~g~ 331 (338)
T cd02933 302 ALADGKADLVAFGRPFIANP-----DLVERLKNGA 331 (338)
T ss_pred HHHcCCCCEEEeCHhhhhCc-----CHHHHHhcCC
Confidence 4444588888876544322 4445555553
No 179
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.28 E-value=0.88 Score=47.77 Aligned_cols=147 Identities=24% Similarity=0.260 Sum_probs=96.4
Q ss_pred cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCc--cCCCCccccCHHHHHHHHHHHHHHhHhhCCCeE
Q 012815 149 VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGC--GHTRGRKVVSREEAVMRIKAAVDARKESGSDIV 226 (456)
Q Consensus 149 ~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~C--GH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfv 226 (456)
.+-|+|+= +|--++++..++++....-+ +||.|.-+-.+|.- ||. |--|...-|.+..+-.++.+. ++.+.-
T Consensus 72 ~D~PLIvQ--f~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~y-Ga~L~~~~eLv~e~V~~v~~~--l~~pVs 145 (358)
T KOG2335|consen 72 EDRPLIVQ--FGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGY-GAFLMDNPELVGEMVSAVRAN--LNVPVS 145 (358)
T ss_pred CCCceEEE--EcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCc-cceeccCHHHHHHHHHHHHhh--cCCCeE
Confidence 36999986 33125677777776555544 99999887543221 333 345665556666665555443 345555
Q ss_pred EEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCC-----------CHHHHHHHHHhCCCCceeeeeeccCCCCCCCC
Q 012815 227 IVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA-----------SKEEMKAFCEISPLVPKMANMLEGGGKTPILN 295 (456)
Q Consensus 227 IiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~-----------s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt 295 (456)
+--|+- .+++++++-|+...+||++.+.|+|-+ +-+-++.+.+.++.+|+++| |+ ..+
T Consensus 146 ~KIRI~----~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaN----Gn---I~~ 214 (358)
T KOG2335|consen 146 VKIRIF----VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIAN----GN---ILS 214 (358)
T ss_pred EEEEec----CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEee----CC---cCc
Confidence 555553 578999999999999999999999842 34678888888887888887 23 233
Q ss_pred HHH----HHhcCCCEEeccch
Q 012815 296 PLE----LEELGFKLVAYPLS 312 (456)
Q Consensus 296 ~~e----L~elGv~~Vs~p~~ 312 (456)
.+| ++.-|+.-|-.+-.
T Consensus 215 ~~d~~~~~~~tG~dGVM~arg 235 (358)
T KOG2335|consen 215 LEDVERCLKYTGADGVMSARG 235 (358)
T ss_pred HHHHHHHHHHhCCceEEecch
Confidence 333 34477776655443
No 180
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.28 E-value=4.9 Score=43.85 Aligned_cols=281 Identities=16% Similarity=0.160 Sum_probs=154.6
Q ss_pred HHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCC--CCCC-HHH-HHHHHHHHH
Q 012815 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-AMN-VKRTVKGYI 175 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~Dt--GYG~-~~n-v~rtVk~l~ 175 (456)
.-|..++++||.++=+.|.+.--+.+++-.. +--|.+..++.....+.+=.+.=.-+ ||-+ +.+ +...+++..
T Consensus 39 ~ia~~ld~~G~~siE~wGGAtfd~~~rfl~e---dpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~ 115 (468)
T PRK12581 39 PVLTILDKIGYYSLECWGGATFDACIRFLNE---DPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSA 115 (468)
T ss_pred HHHHHHHhcCCCEEEecCCcchhhhhcccCC---CHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHH
Confidence 3466778889999988743322223455432 33455555555544333222233444 4554 445 555678888
Q ss_pred HhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCC--eEEEEecchhhcccHHHHHHHHHHhHhcC
Q 012815 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD--IVIVARTDSRQALSLEESLRRSRAFADAG 253 (456)
Q Consensus 176 ~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~d--fvIiARTDA~~~~~ldeAI~RakAy~eAG 253 (456)
+.|++-+.|=|.. -+.+.+..-|+++++ .|.. +.|..-++. .+.++=.++-++.+.++|
T Consensus 116 ~~Gidi~Rifd~l-------------nd~~n~~~ai~~ak~----~G~~~~~~i~yt~sp--~~t~~y~~~~a~~l~~~G 176 (468)
T PRK12581 116 QNGIDVFRIFDAL-------------NDPRNIQQALRAVKK----TGKEAQLCIAYTTSP--VHTLNYYLSLVKELVEMG 176 (468)
T ss_pred HCCCCEEEEcccC-------------CCHHHHHHHHHHHHH----cCCEEEEEEEEEeCC--cCcHHHHHHHHHHHHHcC
Confidence 9999999998852 233444444444443 3422 223333322 345667788899999999
Q ss_pred CCEEEec---cCCCHHHHHHHHHhCCC-CceeeeeeccCCCCCCCCH---HHHHhcCCCEEeccch--HHHHHHHHHHHH
Q 012815 254 ADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNP---LELEELGFKLVAYPLS--LIGVSVRAMQDA 324 (456)
Q Consensus 254 AD~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~lt~---~eL~elGv~~Vs~p~~--ll~aa~~A~~~~ 324 (456)
||.|.+- |+-.++++.++.+.+.. +.+++.+ +.+ .+..+.. -.--+.|++.|=.... .-++.-.++++.
T Consensus 177 ad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~-H~H-nt~GlA~An~laAieAGad~vD~ai~g~g~gagN~~tE~l 254 (468)
T PRK12581 177 ADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIV-HTH-ATSGISQMTYLAAVEAGADRIDTALSPFSEGTSQPATESM 254 (468)
T ss_pred CCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEE-EeC-CCCccHHHHHHHHHHcCCCEEEeeccccCCCcCChhHHHH
Confidence 9999985 34566677666654322 1133332 221 2333433 4456789888755433 234555666666
Q ss_pred HHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHcccccccCccccCCCCCCCCCcceeeEEEEEEecCCCceeecccc
Q 012815 325 LTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENGGSRDAFSGIWSRTLRVKITGRDGFEKLDVRI 404 (456)
Q Consensus 325 l~~i~~g~~~~~~~~~~~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (456)
+..|++.+.. ....++.+.++-.+ +.+..++|.+... . ..+.+.+-+. . +.-.|
T Consensus 255 v~~L~~~g~~---tgiDl~~L~~~a~~--~~~vr~~y~~~~~-~---~~~~~~~d~~----v-------------~~hqi 308 (468)
T PRK12581 255 YLALKEAGYD---ITLDETLLEQAANH--LRQARQKYLADGI-L---DPSLLFPDPR----T-------------LQYQV 308 (468)
T ss_pred HHHHHhcCCC---CCcCHHHHHHHHHH--HHHHHHHhccccc-C---CCccCCCCcc----e-------------eeCCC
Confidence 6666643222 12334444443322 5666677754211 0 0011111111 1 34568
Q ss_pred CcccchhhhhhccccccccHHHHhhhhhh
Q 012815 405 PAGFLDGITNVVPALGGVNLKELLNDAAE 433 (456)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (456)
|-|- +||+..+|...++.+++++.-+
T Consensus 309 PGGm---~snl~~Ql~~~g~~dr~~ev~~ 334 (468)
T PRK12581 309 PGGM---LSNMLSQLKQANAESKLEEVLA 334 (468)
T ss_pred Ccch---HHHHHHHHHHCCcHhhHHHHHH
Confidence 8886 5888899999888887776643
No 181
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=3 Score=43.63 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=96.8
Q ss_pred ChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC-CcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012815 98 DALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIGDGDNGYGNAMNVKRTVKGYIK 176 (456)
Q Consensus 98 DalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~-iPVIaD~DtGYG~~~nv~rtVk~l~~ 176 (456)
+--..+.+-++|.|+||+|.-.+. ..+.+ ...+.+|+...++...+.-. .-|.+-.=.==+....+.+.++.+.+
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~--~R~~a--~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e 90 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFG--LRRRA--LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVE 90 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccc--ccccc--ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHH
Confidence 334445666789999999965444 24555 46788887666665544322 22222211111233457899999999
Q ss_pred hCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCE
Q 012815 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADV 256 (456)
Q Consensus 177 AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~ 256 (456)
.|+++|.+-|=. -|..+ ++.+|++-|.+-|-+..... +.++-|.+.|+.-
T Consensus 91 ~GvDaviv~Dpg---------------------~i~l~----~e~~p~l~ih~S~q~~v~N~-----~~~~f~~~~G~~r 140 (347)
T COG0826 91 LGVDAVIVADPG---------------------LIMLA----RERGPDLPIHVSTQANVTNA-----ETAKFWKELGAKR 140 (347)
T ss_pred cCCCEEEEcCHH---------------------HHHHH----HHhCCCCcEEEeeeEecCCH-----HHHHHHHHcCCEE
Confidence 999999998841 11111 22368888888887754322 6688899999888
Q ss_pred EEeccCCCHHHHHHHHHhCC
Q 012815 257 LFIDALASKEEMKAFCEISP 276 (456)
Q Consensus 257 Ifie~~~s~eei~~i~~~v~ 276 (456)
++++-.-+.++++++.+..|
T Consensus 141 vVl~rEls~~ei~~i~~~~~ 160 (347)
T COG0826 141 VVLPRELSLEEIKEIKEQTP 160 (347)
T ss_pred EEeCccCCHHHHHHHHHhCC
Confidence 88888788899999999875
No 182
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.20 E-value=0.39 Score=51.53 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHH
Q 012815 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~Ra 246 (456)
+.+..+.|.+.+...+-+-|.. |+.-| +++.++..+.+.-....++ .+..++|-|..... ++.++|+
T Consensus 163 l~eal~~m~~~~~~~lpVVDe~-----G~lvG--iVT~~DIl~~~~~~~~~~d-~~g~l~V~aav~~~-----~~~~~r~ 229 (450)
T TIGR01302 163 LEEALKVLHEHRIEKLPVVDKN-----GELVG--LITMKDIVKRRKFPHASKD-ENGRLIVGAAVGTR-----EFDKERA 229 (450)
T ss_pred HHHHHHHHHHcCCCeEEEEcCC-----CcEEE--EEEhHHhhhcccCCcceEe-CCCCEEEEEEecCc-----hhHHHHH
Confidence 4555667777787766666642 23322 6777777666532111111 12356666655432 4668999
Q ss_pred HHhHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCceee-eeeccCCCCCCCCHHHHHhcCCCEEecc
Q 012815 247 RAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYP 310 (456)
Q Consensus 247 kAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~-N~~~~~g~tp~lt~~eL~elGv~~Vs~p 310 (456)
++..++|+|+|.|... .-.+.++++.+.+|.+|+++ |+. + .-....|.++|+..|-++
T Consensus 230 ~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~-----t-~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 230 EALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVA-----T-AEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCC-----C-HHHHHHHHHhCCCEEEEC
Confidence 9999999999999873 22456777777777677665 332 1 123578999999999654
No 183
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=94.19 E-value=1.6 Score=47.43 Aligned_cols=267 Identities=19% Similarity=0.207 Sum_probs=142.8
Q ss_pred HHHHHHHHhCCcEEEecchHHhh--hhcccCCCCCCCHHHHHHHHHHHHhccCCcEEE--eCCC--CCCC-HHH-HHHHH
Q 012815 100 LSAKLVEKSGFSFCFTSGFSISA--ARLALPDTGFISYGEMVDQGQLITQAVSIPVIG--DGDN--GYGN-AMN-VKRTV 171 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG~avSa--s~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIa--D~Dt--GYG~-~~n-v~rtV 171 (456)
.-|..+.++|++.|=+.|.+.-. ...=.|| -.|.+..++... -+.++.+ =..+ ||-. +.+ +...+
T Consensus 29 ~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~-----p~e~l~~l~~~~--~~~~l~~l~r~~N~~G~~~~~dDvv~~fv 101 (467)
T PRK14041 29 PALEAFDRMGFYSMEVWGGATFDVCVRFLNEN-----PWERLKEIRKRL--KNTKIQMLLRGQNLVGYRHYADDVVELFV 101 (467)
T ss_pred HHHHHHHHcCCCEEEecCCccchhhhcccCCC-----HHHHHHHHHHhC--CCCEEEEEeccccccCcccccchhhHHHH
Confidence 34566778899999775322110 1112233 234444443322 2355543 5665 5643 456 44558
Q ss_pred HHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEe---cchhhcccHHHHHHHHHH
Q 012815 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR---TDSRQALSLEESLRRSRA 248 (456)
Q Consensus 172 k~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiAR---TDA~~~~~ldeAI~RakA 248 (456)
++..++|++-++|-|... + .+.++.+++..++.|. .+.+- |.+ ....++..++.++.
T Consensus 102 ~~A~~~Gvd~irif~~ln-------------d----~~n~~~~i~~ak~~G~--~v~~~i~~t~~-p~~t~e~~~~~a~~ 161 (467)
T PRK14041 102 KKVAEYGLDIIRIFDALN-------------D----IRNLEKSIEVAKKHGA--HVQGAISYTVS-PVHTLEYYLEFARE 161 (467)
T ss_pred HHHHHCCcCEEEEEEeCC-------------H----HHHHHHHHHHHHHCCC--EEEEEEEeccC-CCCCHHHHHHHHHH
Confidence 888999999999988642 1 2334444444444442 22211 222 23567888999999
Q ss_pred hHhcCCCEEEec---cCCCHHHHHHHHH----hCCCCceeeeeeccCCCCCCCC---HHHHHhcCCCEEeccch--HHHH
Q 012815 249 FADAGADVLFID---ALASKEEMKAFCE----ISPLVPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLS--LIGV 316 (456)
Q Consensus 249 y~eAGAD~Ifie---~~~s~eei~~i~~----~v~~vP~~~N~~~~~g~tp~lt---~~eL~elGv~~Vs~p~~--ll~a 316 (456)
+.++|||.|.+- |+-+++++.++.+ +++ +| +.+ +.+ .+..+. .-.--+.|+.+|-.... .-++
T Consensus 162 l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vp--I~~-H~H-nt~GlA~AN~laAieaGad~vD~sv~~~g~ga 236 (467)
T PRK14041 162 LVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG-VP--VEV-HSH-CTTGLASLAYLAAVEAGADMFDTAISPFSMGT 236 (467)
T ss_pred HHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC-Cc--eEE-Eec-CCCCcHHHHHHHHHHhCCCEEEeeccccCCCC
Confidence 999999999885 3445566665554 444 44 332 221 122333 23455789998765443 3345
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccH-HHHHHcccccccCccccCCCCCCCCCcceeeEEEEEEecCC
Q 012815 317 SVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTY-YEEEKRYATSMRRLSSENGGSRDAFSGIWSRTLRVKITGRD 395 (456)
Q Consensus 317 a~~A~~~~l~~i~~g~~~~~~~~~~~~e~~~lvg~~~~-~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (456)
+.-++++.+..|+..+.. ....++.+. .+.+| .+..++|...+.... .+-+.
T Consensus 237 gN~atE~lv~~L~~~g~~---tgiDl~~L~---~~~~~~~~vr~~y~~~~~~~~-------~~~~~-------------- 289 (467)
T PRK14041 237 SQPPFESMYYAFRENGKE---TDFDRKALK---FLVEYFTKVREKYSEYDVGMK-------SPDSR-------------- 289 (467)
T ss_pred CChhHHHHHHHHHhcCCC---CCcCHHHHH---HHHHHHHHHHHHHhhcCCCCC-------CCCcC--------------
Confidence 566666766667643222 123344443 33444 444556654322211 11111
Q ss_pred CceeeccccCcccchhhhhhccccccccHHHHhhhh
Q 012815 396 GFEKLDVRIPAGFLDGITNVVPALGGVNLKELLNDA 431 (456)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (456)
-+.-.||-|- +||+..+|...++.+++++.
T Consensus 290 ---v~~~q~PGG~---~snl~~Ql~~~g~~~~~~~v 319 (467)
T PRK14041 290 ---ILVSQIPGGM---YSNLVKQLKEQKMLHKLDKV 319 (467)
T ss_pred ---eeeCCCCcch---HHHHHHHHHHCCcHhHHHHH
Confidence 1234567775 46777777777766666554
No 184
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=94.18 E-value=3.5 Score=40.59 Aligned_cols=133 Identities=23% Similarity=0.346 Sum_probs=88.2
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEe
Q 012815 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (456)
Q Consensus 151 iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiAR 230 (456)
+|+-+= .|+++++...+.++++.+.|..+++|- +|. +.++-+++|++++++. |+++.+ |
T Consensus 75 i~~~~~--~~~~~~~~~~~~~~~~~~~G~~~~KiK-------vg~-------~~~~d~~~v~~vr~~~---g~~~~l--~ 133 (265)
T cd03315 75 VRVAHM--LGLGEPAEVAEEARRALEAGFRTFKLK-------VGR-------DPARDVAVVAALREAV---GDDAEL--R 133 (265)
T ss_pred eEEEEE--ecCCCHHHHHHHHHHHHHCCCCEEEEe-------cCC-------CHHHHHHHHHHHHHhc---CCCCEE--E
Confidence 555432 244567777888888999999999993 231 1255577888887664 556655 7
Q ss_pred cchhhcccHHHHHHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHH---Hhc-C
Q 012815 231 TDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLEL---EEL-G 303 (456)
Q Consensus 231 TDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL---~el-G 303 (456)
-|+......++|++-++++.+.|.+ |+|-+ .+.+.++++.+..+ +|+..+ +. ..+..++ -+. +
T Consensus 134 vDan~~~~~~~a~~~~~~l~~~~i~--~iEeP~~~~d~~~~~~l~~~~~-ipia~d-----E~--~~~~~~~~~~i~~~~ 203 (265)
T cd03315 134 VDANRGWTPKQAIRALRALEDLGLD--YVEQPLPADDLEGRAALARATD-TPIMAD-----ES--AFTPHDAFRELALGA 203 (265)
T ss_pred EeCCCCcCHHHHHHHHHHHHhcCCC--EEECCCCcccHHHHHHHHhhCC-CCEEEC-----CC--CCCHHHHHHHHHhCC
Confidence 8887777899999999999988654 55643 34678889988876 776543 21 2344443 333 4
Q ss_pred CCEEeccchHH
Q 012815 304 FKLVAYPLSLI 314 (456)
Q Consensus 304 v~~Vs~p~~ll 314 (456)
+..|..-+...
T Consensus 204 ~d~v~~k~~~~ 214 (265)
T cd03315 204 ADAVNIKTAKT 214 (265)
T ss_pred CCEEEEecccc
Confidence 77776654433
No 185
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=94.17 E-value=3.5 Score=42.57 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=92.1
Q ss_pred ecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHH
Q 012815 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVK 172 (456)
Q Consensus 93 ~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk 172 (456)
|.++-|+-.|..+.++|-=.+.... .+.++....++.+. -++.+-.-.|. ..+..+.++
T Consensus 42 M~~vt~~~ma~ava~~GglGvi~~~---------------~~~~~~~~~i~~vk----~~l~v~~~~~~--~~~~~~~~~ 100 (325)
T cd00381 42 MDTVTESEMAIAMARLGGIGVIHRN---------------MSIEEQAEEVRKVK----GRLLVGAAVGT--REDDKERAE 100 (325)
T ss_pred CCcCCcHHHHHHHHHCCCEEEEeCC---------------CCHHHHHHHHHHhc----cCceEEEecCC--ChhHHHHHH
Confidence 4466777777777777643332211 23466555555553 23333333333 234566778
Q ss_pred HHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhc
Q 012815 173 GYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA 252 (456)
Q Consensus 173 ~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eA 252 (456)
.++++|+..|.|.=. .||. +...+.|+.++++ .++..|++=+ . ...+.++...++
T Consensus 101 ~l~eagv~~I~vd~~-----~G~~--------~~~~~~i~~ik~~----~p~v~Vi~G~-v-------~t~~~A~~l~~a 155 (325)
T cd00381 101 ALVEAGVDVIVIDSA-----HGHS--------VYVIEMIKFIKKK----YPNVDVIAGN-V-------VTAEAARDLIDA 155 (325)
T ss_pred HHHhcCCCEEEEECC-----CCCc--------HHHHHHHHHHHHH----CCCceEEECC-C-------CCHHHHHHHHhc
Confidence 888999999988322 1332 2334445555443 2456666511 1 114668888899
Q ss_pred CCCEEEec---------------cCCCHHHHHHHHHhCC--CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012815 253 GADVLFID---------------ALASKEEMKAFCEISP--LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (456)
Q Consensus 253 GAD~Ifie---------------~~~s~eei~~i~~~v~--~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll 314 (456)
|||.|.+. +.++...+.++.+..+ .+|++.+ +|-...-.....-++|..-|..|..+.
T Consensus 156 GaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~----GGI~~~~di~kAla~GA~~VmiGt~fa 230 (325)
T cd00381 156 GADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIAD----GGIRTSGDIVKALAAGADAVMLGSLLA 230 (325)
T ss_pred CCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEec----CCCCCHHHHHHHHHcCCCEEEecchhc
Confidence 99999873 1223333334433322 2665532 343222234444569999998876443
No 186
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.15 E-value=0.3 Score=49.23 Aligned_cols=137 Identities=23% Similarity=0.268 Sum_probs=85.0
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh-hcccHHHHHHHHH
Q 012815 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-QALSLEESLRRSR 247 (456)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~-~~~~ldeAI~Rak 247 (456)
-+.+.+.++|+++|-.-|...--..||.+. ..++.+||+..+++++++.. ..+ |++=..-- ...+.+++++++.
T Consensus 26 ~sArl~e~aG~d~i~vGds~~~~~lG~~Dt-~~vtl~em~~h~~~V~r~~~---~p~-vvaD~pfg~y~~~~~~av~~a~ 100 (264)
T PRK00311 26 PFAKLFDEAGVDVILVGDSLGMVVLGYDST-LPVTLDDMIYHTKAVARGAP---RAL-VVADMPFGSYQASPEQALRNAG 100 (264)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHcCCCCC-CCcCHHHHHHHHHHHHhcCC---CCc-EEEeCCCCCccCCHHHHHHHHH
Confidence 344677889999999876653234677653 47899999999998877653 223 44544211 1246688999977
Q ss_pred HhHh-cCCCEEEeccCCC-HHHHHHHHHhCCCCcee---------eeeecc---CCCCCC-----C-CHHHHHhcCCCEE
Q 012815 248 AFAD-AGADVLFIDALAS-KEEMKAFCEISPLVPKM---------ANMLEG---GGKTPI-----L-NPLELEELGFKLV 307 (456)
Q Consensus 248 Ay~e-AGAD~Ifie~~~s-~eei~~i~~~v~~vP~~---------~N~~~~---~g~tp~-----l-t~~eL~elGv~~V 307 (456)
+..+ +||++|.+|+-.. .+.++.++++ ++|++ .|...+ .|++.. + ....|+++|...+
T Consensus 101 r~~~~aGa~aVkiEdg~~~~~~I~al~~a--gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i 178 (264)
T PRK00311 101 RLMKEAGAHAVKLEGGEEVAETIKRLVER--GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFAL 178 (264)
T ss_pred HHHHHhCCeEEEEcCcHHHHHHHHHHHHC--CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 6666 9999999998522 2345555543 36654 211100 122221 0 1356778888888
Q ss_pred eccch
Q 012815 308 AYPLS 312 (456)
Q Consensus 308 s~p~~ 312 (456)
.....
T Consensus 179 ~lE~v 183 (264)
T PRK00311 179 VLECV 183 (264)
T ss_pred EEcCC
Confidence 77654
No 187
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=94.15 E-value=0.52 Score=45.58 Aligned_cols=110 Identities=17% Similarity=0.118 Sum_probs=67.1
Q ss_pred ccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhccc-CCCCCCCHHHHHHHHHHHHhccCCcE
Q 012815 75 LSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLAL-PDTGFISYGEMVDQGQLITQAVSIPV 153 (456)
Q Consensus 75 ~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~-PD~~~lt~~Eml~~~r~I~ra~~iPV 153 (456)
....+.+++.++.. .++|--|.+.--|+.++++|||.|.++= .|| |++.. ..-=++.++++++. ++||
T Consensus 79 ~~l~~li~~i~~~~-~l~MADist~ee~~~A~~~G~D~I~TTL-------sGYT~~t~~--~~pD~~lv~~l~~~-~~pv 147 (192)
T PF04131_consen 79 ETLEELIREIKEKY-QLVMADISTLEEAINAAELGFDIIGTTL-------SGYTPYTKG--DGPDFELVRELVQA-DVPV 147 (192)
T ss_dssp S-HHHHHHHHHHCT-SEEEEE-SSHHHHHHHHHTT-SEEE-TT-------TTSSTTSTT--SSHHHHHHHHHHHT-TSEE
T ss_pred cCHHHHHHHHHHhC-cEEeeecCCHHHHHHHHHcCCCEEEccc-------ccCCCCCCC--CCCCHHHHHHHHhC-CCcE
Confidence 34456666766666 8999999999999999999999999871 133 22222 11123445666665 8998
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHH
Q 012815 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAA 214 (456)
Q Consensus 154 IaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA 214 (456)
|+. .+|..++++. +..++||.+|.+-- .++-+++..+|...+
T Consensus 148 IaE--Gri~tpe~a~----~al~~GA~aVVVGs-------------AITrP~~It~~F~~a 189 (192)
T PF04131_consen 148 IAE--GRIHTPEQAA----KALELGAHAVVVGS-------------AITRPQEITKRFVDA 189 (192)
T ss_dssp EEE--SS--SHHHHH----HHHHTT-SEEEE-H-------------HHH-HHHHHHHHHHH
T ss_pred eec--CCCCCHHHHH----HHHhcCCeEEEECc-------------ccCCHHHHHHHHHHH
Confidence 875 4566776654 56678999998822 355555666555433
No 188
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=94.10 E-value=4.8 Score=44.22 Aligned_cols=253 Identities=15% Similarity=0.159 Sum_probs=135.0
Q ss_pred HHHHHHhCCCceeecccCCh-HHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCC
Q 012815 80 SLRQILELPGVHQGPACFDA-LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158 (456)
Q Consensus 80 ~Lr~ll~~~~~lv~pgayDa-lSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~D 158 (456)
+||.-+++.....+ ...|- .-|..++++||..|=+.|.+.--+.+.+-.. +--|.+...+.....+.+-...=+-
T Consensus 11 TLRDG~QSl~atr~-~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~E---dpwerlr~lr~~~~nt~lqmL~Rg~ 86 (499)
T PRK12330 11 ALRDAHQSLMATRM-AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNE---DPWERLRTFRKLMPNSRLQMLLRGQ 86 (499)
T ss_pred CccchhhcccCccC-CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC---CHHHHHHHHHHhCCCCeEEEEEccc
Confidence 45666655332222 22222 3456778899999988743321122333221 2234444444433333333444445
Q ss_pred C--CCCC-HHH-HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCe-EEEEecch
Q 012815 159 N--GYGN-AMN-VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVARTDS 233 (456)
Q Consensus 159 t--GYG~-~~n-v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~df-vIiARTDA 233 (456)
+ ||.+ +.+ +..-+++..+.|++-++|=|... +.+.+..-|++++++ |... .-+.-|-+
T Consensus 87 N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~ln-------------dv~nl~~ai~~vk~a----g~~~~~~i~yt~s 149 (499)
T PRK12330 87 NLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALN-------------DPRNLEHAMKAVKKV----GKHAQGTICYTVS 149 (499)
T ss_pred ccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCC-------------hHHHHHHHHHHHHHh----CCeEEEEEEEecC
Confidence 4 6776 444 56678899999999999988741 223333333333333 3211 11122222
Q ss_pred hhcccHHHHHHHHHHhHhcCCCEEEecc---CCCHHHHHHHHH----hCC-CCceeeeeeccCCCCCCCCH---HHHHhc
Q 012815 234 RQALSLEESLRRSRAFADAGADVLFIDA---LASKEEMKAFCE----ISP-LVPKMANMLEGGGKTPILNP---LELEEL 302 (456)
Q Consensus 234 ~~~~~ldeAI~RakAy~eAGAD~Ifie~---~~s~eei~~i~~----~v~-~vP~~~N~~~~~g~tp~lt~---~eL~el 302 (456)
..+.++.-++-++.+.++|||.|.+-- +-+++++.++.+ +++ .+| +.+ +.+ .+..+.. -.--+.
T Consensus 150 -p~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ip--I~~-H~H-nt~GlA~An~laAieA 224 (499)
T PRK12330 150 -PIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTR--INL-HCH-STTGVTLVSLMKAIEA 224 (499)
T ss_pred -CCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCe--EEE-EeC-CCCCcHHHHHHHHHHc
Confidence 245678889999999999999998853 445566655554 443 234 332 221 2333433 345579
Q ss_pred CCCEEeccch--HHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHcccc
Q 012815 303 GFKLVAYPLS--LIGVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYAT 363 (456)
Q Consensus 303 Gv~~Vs~p~~--ll~aa~~A~~~~l~~i~~g~~~~~~~~~~~~e~~~lvg~~~~~~~e~~y~~ 363 (456)
|++.|=.... ..++...++++.+..|+..+.. ....++.+.++-.+ |.+..++|..
T Consensus 225 Gad~vDtai~Glg~~aGn~atE~vv~~L~~~g~~---tgiDl~~L~~i~~~--~~~vr~~y~~ 282 (499)
T PRK12330 225 GVDVVDTAISSMSLGPGHNPTESLVEMLEGTGYT---TKLDMDRLLKIRDH--FKKVRPKYKE 282 (499)
T ss_pred CCCEEEeecccccccccchhHHHHHHHHHhcCCC---CCCCHHHHHHHHHH--HHHHHHHHhc
Confidence 9998865444 3445556677777777643222 12344454443222 4445556644
No 189
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=94.09 E-value=2 Score=40.02 Aligned_cols=132 Identities=24% Similarity=0.257 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHH
Q 012815 135 YGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAA 214 (456)
Q Consensus 135 ~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA 214 (456)
+.+++..++.+++..+.|++++- .++...+.|++|||+.+.. .+.+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~l~i~~------------~~~la~~~g~~GvHl~~~~-------------~~~~~~------- 89 (196)
T TIGR00693 42 RLALAEKLQELCRRYGVPFIVND------------RVDLALALGADGVHLGQDD-------------LPASEA------- 89 (196)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEC------------HHHHHHHcCCCEEecCccc-------------CCHHHH-------
Confidence 34566667777777789999853 1345567899999996542 111111
Q ss_pred HHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC------------CCHHHHHHHHHhCCCCceee
Q 012815 215 VDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL------------ASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 215 ~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~------------~s~eei~~i~~~v~~vP~~~ 282 (456)
+...+.+ .+++.+-. ..+|+ ....+.|||.|++-.+ ...+.++++++..+.+|+.+
T Consensus 90 ---r~~~~~~-~~ig~s~h----~~~e~----~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a 157 (196)
T TIGR00693 90 ---RALLGPD-KIIGVSTH----NLEEL----AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVA 157 (196)
T ss_pred ---HHhcCCC-CEEEEeCC----CHHHH----HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 1111223 34443322 22333 3455689999875211 14578888877655456432
Q ss_pred eeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 283 NMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 283 N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
.||-++ -+..++.+.|+.-|..+..++.
T Consensus 158 ----~GGI~~-~~~~~~~~~G~~gva~~~~i~~ 185 (196)
T TIGR00693 158 ----IGGITL-ENAAEVLAAGADGVAVVSAIMQ 185 (196)
T ss_pred ----ECCcCH-HHHHHHHHcCCCEEEEhHHhhC
Confidence 234332 3457788899999988877654
No 190
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=94.08 E-value=1.8 Score=43.27 Aligned_cols=128 Identities=21% Similarity=0.230 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHHHh-CccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhccc
Q 012815 160 GYGNAMNVKRTVKGYIKA-GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALS 238 (456)
Q Consensus 160 GYG~~~nv~rtVk~l~~A-GaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ 238 (456)
|--+++++.++++..-++ |-.=|+||=- .+.+.|.|- .++-++|+..-.+ .+|.|.--|-..
T Consensus 71 Gc~tA~EAv~~A~laRe~~~t~wIKLEVi--------~D~~~L~PD--~~etl~Aae~Lv~---eGF~VlPY~~~D---- 133 (247)
T PF05690_consen 71 GCRTAEEAVRTARLAREAFGTNWIKLEVI--------GDDKTLLPD--PIETLKAAEILVK---EGFVVLPYCTDD---- 133 (247)
T ss_dssp T-SSHHHHHHHHHHHHHTTS-SEEEE--B--------S-TTT--B---HHHHHHHHHHHHH---TT-EEEEEE-S-----
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEEe--------CCCCCcCCC--hhHHHHHHHHHHH---CCCEEeecCCCC----
Confidence 333677777787777764 7778888753 344556663 4778888887776 479988876443
Q ss_pred HHHHHHHHHHhHhcCCCEEEecc--------CCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEecc
Q 012815 239 LEESLRRSRAFADAGADVLFIDA--------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (456)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~--------~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p 310 (456)
.--|+.++++||.+|++.+ +.+.+.++.+.++++ +|+++.. |=.+| -...+-.|||+.-|..-
T Consensus 134 ----~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~-vPvIvDA---GiG~p-Sdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 134 ----PVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERAD-VPVIVDA---GIGTP-SDAAQAMELGADAVLVN 204 (247)
T ss_dssp ----HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGS-SSBEEES------SH-HHHHHHHHTT-SEEEES
T ss_pred ----HHHHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhcC-CcEEEeC---CCCCH-HHHHHHHHcCCceeehh
Confidence 2459999999999999985 467889999999886 8887642 21223 23577899999999986
Q ss_pred chH
Q 012815 311 LSL 313 (456)
Q Consensus 311 ~~l 313 (456)
...
T Consensus 205 TAi 207 (247)
T PF05690_consen 205 TAI 207 (247)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 191
>KOG1260 consensus Isocitrate lyase [Energy production and conversion]
Probab=93.99 E-value=0.054 Score=57.87 Aligned_cols=91 Identities=25% Similarity=0.322 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhHhcCCCEEEeccC-CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHH--------------HHhcC
Q 012815 239 LEESLRRSRAFADAGADVLFIDAL-ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE--------------LEELG 303 (456)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~~-~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~e--------------L~elG 303 (456)
+++.|+|+.+|+.. +|++|.+.- |+.+++++|.+.+.. -.|.+|+.. +.+|.++... |+++|
T Consensus 336 ~q~~I~rai~fApy-~d~~w~et~~pd~~eakeFsegv~~-~~pd~m~ay-~~sPsfn~~~a~~~~~Q~~~f~~~l~~~G 412 (492)
T KOG1260|consen 336 IQEEIGRAIAFAPY-ADLIWMETSYPDRQEAKEFSEGVKK-QYPDSMLAY-NFSPSFNWKKAGFSDEQLVAFDDDLGKMG 412 (492)
T ss_pred HHHHHHHHHccCch-hhhhhhhcCCCCHHHHHHHHHHhhh-cChhhHhhh-cCCCCCCcccccCCHHHHHhhhhhHhhcC
Confidence 78999999999998 999999985 689999999988763 345677775 5677666544 99999
Q ss_pred CCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 012815 304 FKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (456)
Q Consensus 304 v~~Vs~p~~ll~aa~~A~~~~l~~i~~g~ 332 (456)
|.....++..+.+--.++-+...-.++.+
T Consensus 413 ~~~q~itla~~~~~~~a~~d~~~~~k~dG 441 (492)
T KOG1260|consen 413 FILQVITLAGLHANRNAFVDLSNIFKKDG 441 (492)
T ss_pred eEEEEeehhHhcccchhHHHHHHHHHhcc
Confidence 99999999999999999999999887643
No 192
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.98 E-value=0.33 Score=49.05 Aligned_cols=91 Identities=19% Similarity=0.130 Sum_probs=58.4
Q ss_pred HHHHHHHhC-CCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc--CCcEEE
Q 012815 79 KSLRQILEL-PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIG 155 (456)
Q Consensus 79 ~~Lr~ll~~-~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~--~iPVIa 155 (456)
+.++++.+. +.++++-++...-.|+.++++|+++|.+++.+- . ..|.+..+++-+ ..+++.+ ++|||+
T Consensus 162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG---~--~~~~g~~~~~~l----~~i~~~~~~~ipvia 232 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGG---R--QLDGAPATIDAL----PEIVAAVGGRIEVLL 232 (299)
T ss_pred HHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCC---C--CCCCCcCHHHHH----HHHHHHhcCCCeEEE
Confidence 455555543 468888888889999999999999999986331 1 123444444333 3333333 599999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 156 D~DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
|.. ..+..++. +.+ ..||+||.+
T Consensus 233 ~GG--I~~~~d~~---kal-~lGAd~V~i 255 (299)
T cd02809 233 DGG--IRRGTDVL---KAL-ALGADAVLI 255 (299)
T ss_pred eCC--CCCHHHHH---HHH-HcCCCEEEE
Confidence 843 33433333 334 589999988
No 193
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=93.98 E-value=0.63 Score=46.47 Aligned_cols=171 Identities=18% Similarity=0.189 Sum_probs=97.5
Q ss_pred ccccCCCCCccceeecceeeeecccchh--hhhcccCCCCcccccccccCCCccccccccHHHHHH--HHHhCCCceeec
Q 012815 19 LFHSNSRPSSFLGINNNTISFNKTNTNT--LLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLR--QILELPGVHQGP 94 (456)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pr~~~~~R~y~~~s~~~~~a~~~a~~Lr--~ll~~~~~lv~p 94 (456)
+|-..-+|..+-+.+|-+=-.+-..+.. .+....-.-+|..+.-.-..-++-++ .-++++ +.|-+.++.++|
T Consensus 60 ~~l~~l~~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD----~~etl~Aae~Lv~eGF~VlP 135 (262)
T COG2022 60 GILDLLIPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPD----PIETLKAAEQLVKEGFVVLP 135 (262)
T ss_pred hHHHHhhhcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCC----hHHHHHHHHHHHhCCCEEee
Confidence 3444456667777777654333222222 44455555677766433222222222 222222 234445688888
Q ss_pred -ccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHH
Q 012815 95 -ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKG 173 (456)
Q Consensus 95 -gayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~ 173 (456)
+--|..-||-++++|+.+|.=-+.-+- |-+|. .+. +..+-|....++|||||+ |-|.+.++. .
T Consensus 136 Y~~dD~v~arrLee~GcaavMPl~aPIG-Sg~G~-----~n~----~~l~iiie~a~VPviVDA--GiG~pSdAa----~ 199 (262)
T COG2022 136 YTTDDPVLARRLEEAGCAAVMPLGAPIG-SGLGL-----QNP----YNLEIIIEEADVPVIVDA--GIGTPSDAA----Q 199 (262)
T ss_pred ccCCCHHHHHHHHhcCceEecccccccc-CCcCc-----CCH----HHHHHHHHhCCCCEEEeC--CCCChhHHH----H
Confidence 555899999999999998875554443 23343 222 344566666799999996 555665554 3
Q ss_pred HHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 174 l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
..|.|++||.+.--+. + --++--|++-.+.|++|.+
T Consensus 200 aMElG~DaVL~NTAiA-----~-----A~DPv~MA~Af~~Av~AGr 235 (262)
T COG2022 200 AMELGADAVLLNTAIA-----R-----AKDPVAMARAFALAVEAGR 235 (262)
T ss_pred HHhcccceeehhhHhh-----c-----cCChHHHHHHHHHHHHHhH
Confidence 4568999998865431 0 1122345556666666654
No 194
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.97 E-value=3 Score=42.17 Aligned_cols=148 Identities=14% Similarity=0.058 Sum_probs=81.1
Q ss_pred HHHHHHHHhCCcEEEecc---hHHhh----hhcccCCCCCCCHHH----HHHHHHHHHhcc--CCcEEEeCCCCC----C
Q 012815 100 LSAKLVEKSGFSFCFTSG---FSISA----ARLALPDTGFISYGE----MVDQGQLITQAV--SIPVIGDGDNGY----G 162 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG---~avSa----s~lG~PD~~~lt~~E----ml~~~r~I~ra~--~iPVIaD~DtGY----G 162 (456)
-.|+.++++|||+|-+-+ +-+.- ...-..|.--=+++. +++.++.|++.+ +.||.+++.... |
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 567888899999997752 22211 001122311113332 355667777777 689999887531 2
Q ss_pred -CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHH
Q 012815 163 -NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (456)
Q Consensus 163 -~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~lde 241 (456)
+.....+.++.++++|++.|++-........ +.....-.+.....+-++.+++.. +..++..++...
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~-~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~t-------- 292 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPP-PIIPPPYVPEGYFLELAEKIKKAV---KIPVIAVGGIRD-------- 292 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cccCCCCCCcchhHHHHHHHHHHC---CCCEEEeCCCCC--------
Confidence 3567889999999999999998665421100 000000001112222333333332 345666665432
Q ss_pred HHHHHHHhHhc-CCCEEEec
Q 012815 242 SLRRSRAFADA-GADVLFID 260 (456)
Q Consensus 242 AI~RakAy~eA-GAD~Ifie 260 (456)
.+.++.+.+. |||+|.+-
T Consensus 293 -~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 293 -PEVAEEILAEGKADLVALG 311 (327)
T ss_pred -HHHHHHHHHCCCCCeeeec
Confidence 2345556666 79999874
No 195
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.95 E-value=1.9 Score=44.66 Aligned_cols=165 Identities=24% Similarity=0.276 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhCccEEEeCCCC-----------CCCCccCCCCccccCHHHHH-HHHHHHHHHhHhhC----CCeEEEEe
Q 012815 167 VKRTVKGYIKAGFAGIILEDQV-----------SPKGCGHTRGRKVVSREEAV-MRIKAAVDARKESG----SDIVIVAR 230 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~-----------~pK~CGH~~gk~lvp~ee~v-~kI~AA~~Ar~~~G----~dfvIiAR 230 (456)
..+.+++..++|++||.|--.- ..||...-+|. +...-.++ +-|++++++ .| ++|.|--|
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGs-lenR~r~~~eii~~vr~~---vg~~~~~~~~v~~R 221 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGS-LENRMRFPLAVVKAVQEV---IDKHADKDFILGYR 221 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCc-HHHHHHHHHHHHHHHHHH---hccccCCCceEEEE
Confidence 4456677888999999886421 12444333332 22222222 222233332 24 68888888
Q ss_pred cchh----hcccHHHHHHHHHHhHhcCCCEEEeccC---------C--CHHHHHHHHHhCC-CCceeeeeeccCCC-CCC
Q 012815 231 TDSR----QALSLEESLRRSRAFADAGADVLFIDAL---------A--SKEEMKAFCEISP-LVPKMANMLEGGGK-TPI 293 (456)
Q Consensus 231 TDA~----~~~~ldeAI~RakAy~eAGAD~Ifie~~---------~--s~eei~~i~~~v~-~vP~~~N~~~~~g~-tp~ 293 (456)
-... ....++|.++-++.+.++|+|.|=+.+- + ..+.++.+.+.+. .+|+++| ++- +|.
T Consensus 222 ~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~----Ggi~t~e 297 (353)
T cd04735 222 FSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAV----GSINTPD 297 (353)
T ss_pred ECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEE----CCCCCHH
Confidence 6542 2235799999999999999999977431 0 1234555655552 3677654 232 221
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHH
Q 012815 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRIPSPGSMPSFQEI 345 (456)
Q Consensus 294 lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~~g~~~~~~~~~~~~e~ 345 (456)
..+++-+.|+..|.++-.++.- -+....+++|.......++.-+.+
T Consensus 298 -~ae~~l~~gaD~V~~gR~liad-----Pdl~~k~~~G~~~~ir~ci~~~~~ 343 (353)
T cd04735 298 -DALEALETGADLVAIGRGLLVD-----PDWVEKIKEGREDEINLEIDPDDL 343 (353)
T ss_pred -HHHHHHHcCCChHHHhHHHHhC-----ccHHHHHHcCChhhhhhcCCHHHH
Confidence 2344444488877665544332 355566666653322234444444
No 196
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.93 E-value=2.1 Score=42.12 Aligned_cols=174 Identities=11% Similarity=0.081 Sum_probs=103.3
Q ss_pred HHHHHHHH-hCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012815 100 LSAKLVEK-SGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (456)
Q Consensus 100 lSArl~e~-aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG 178 (456)
-.|+..++ .|++-+++-=+.- +.-|.+ .....++.|++.+++||.++ .|.-+ .+.++++.++|
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~--a~~~~~--------~n~~~I~~i~~~~~~pi~vG--GGIrs----~e~v~~~l~~G 98 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIG--AKAQHA--------REFDYIKSLRRLTTKDIEVG--GGIRT----KSQIMDYFAAG 98 (234)
T ss_pred HHHHHHHhccCCCEEEEEECcc--cccCCc--------chHHHHHHHHhhcCCeEEEc--CCcCC----HHHHHHHHHCC
Confidence 46777777 6999999874321 112333 23566788888889998775 33334 44567888899
Q ss_pred ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhc----ccH-----HHHHHHHHHh
Q 012815 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA----LSL-----EESLRRSRAF 249 (456)
Q Consensus 179 aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~----~~l-----deAI~RakAy 249 (456)
|+=+.| +.. .+.++ ++++++ .+..|.. ++++ -|.... .++ -+.++-++.|
T Consensus 99 a~kvvi-gt~-----------a~~~~-~~l~~~------~~~fg~~-ivvs-lD~~~g~v~~~gw~~~~~~~~~~~~~~~ 157 (234)
T PRK13587 99 INYCIV-GTK-----------GIQDT-DWLKEM------AHTFPGR-IYLS-VDAYGEDIKVNGWEEDTELNLFSFVRQL 157 (234)
T ss_pred CCEEEE-Cch-----------HhcCH-HHHHHH------HHHcCCC-EEEE-EEeeCCEEEecCCcccCCCCHHHHHHHH
Confidence 999877 321 12222 233333 2222222 3333 444211 111 1235667778
Q ss_pred HhcCCCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 250 ADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 250 ~eAGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
.+.|+..+.+-.+ ++.+.++++++..+ +|+.+ .+|-...-..+++.++|+..|+.+..++.
T Consensus 158 ~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~-ipvi~----~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 158 SDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATT-IPVIA----SGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHcCCCEEEEecccCcCCCCccCHHHHHHHHHhCC-CCEEE----eCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 8899887776544 35777888888754 56543 23433222456677899999999987765
No 197
>PRK14017 galactonate dehydratase; Provisional
Probab=93.90 E-value=1.8 Score=45.18 Aligned_cols=133 Identities=16% Similarity=0.251 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccH
Q 012815 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (456)
Q Consensus 160 GYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~l 239 (456)
|.++++.+.+.++++.+.|...+|+-- .+|.+ -.++ -.+.++-+++|++++++. |+++.| |.|+....+.
T Consensus 121 ~~~~~~~~~~~a~~~~~~Gf~~~KiKv--~~~~~-~~~~--~~~~~~d~~~i~avr~~~---g~~~~l--~vDaN~~w~~ 190 (382)
T PRK14017 121 GGDRPADVAEAARARVERGFTAVKMNG--TEELQ-YIDS--PRKVDAAVARVAAVREAV---GPEIGI--GVDFHGRVHK 190 (382)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcC--cCCcc-cccc--HHHHHHHHHHHHHHHHHh---CCCCeE--EEECCCCCCH
Confidence 334677788888888899999999942 11111 0000 012344577888777664 567765 6788877889
Q ss_pred HHHHHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHH---HHHhcC-CCEEeccch
Q 012815 240 EESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPL---ELEELG-FKLVAYPLS 312 (456)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~---eL~elG-v~~Vs~p~~ 312 (456)
++|++.++++.+.| ..|+|-+ .+.+.++++.+..+ +|+... .. ..+.. +|-+.| ++.+..-..
T Consensus 191 ~~A~~~~~~l~~~~--~~~iEeP~~~~d~~~~~~L~~~~~-~pIa~d-----Es--~~~~~~~~~li~~~a~d~v~~d~~ 260 (382)
T PRK14017 191 PMAKVLAKELEPYR--PMFIEEPVLPENAEALPEIAAQTS-IPIATG-----ER--LFSRWDFKRVLEAGGVDIIQPDLS 260 (382)
T ss_pred HHHHHHHHhhcccC--CCeEECCCCcCCHHHHHHHHhcCC-CCEEeC-----Cc--cCCHHHHHHHHHcCCCCeEecCcc
Confidence 99999999998875 5588875 35678889988876 776543 11 23444 444455 666655443
No 198
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=93.87 E-value=1.4 Score=45.30 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=84.5
Q ss_pred HHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCH-HHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012815 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISY-GEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~-~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG 178 (456)
--|+.++++|++++=+--.+.. .-|+...... +.+.+.++.+++.+++||++=.--.+. ++.+.++.++++|
T Consensus 116 ~~a~~~~~~gad~iElN~s~~~----~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~---~~~~~a~~l~~~G 188 (325)
T cd04739 116 DYARQIEEAGADALELNIYALP----TDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFS---ALAHMAKQLDAAG 188 (325)
T ss_pred HHHHHHHhcCCCEEEEeCCCCC----CCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCcc---CHHHHHHHHHHcC
Confidence 3467778889998876521111 1122211222 334567788888889999998643333 5677778889999
Q ss_pred ccEEEeCCCCC-CC---------CccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012815 179 FAGIILEDQVS-PK---------GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (456)
Q Consensus 179 aaGI~IEDq~~-pK---------~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakA 248 (456)
|+||.+-.... +. .-+-..|..+.|.. .+-|+.+. +. .++-|+|=..-.. -++ +..
T Consensus 189 adgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~a--l~~v~~v~---~~--~~ipIig~GGI~s---~~D----a~e 254 (325)
T cd04739 189 ADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLP--LRWIAILS---GR--VKASLAASGGVHD---AED----VVK 254 (325)
T ss_pred CCeEEEEcCcCCCCccccccceecCCCcCCccchhHH--HHHHHHHH---cc--cCCCEEEECCCCC---HHH----HHH
Confidence 99999977641 10 00112333443332 22233222 21 2445555443332 233 444
Q ss_pred hHhcCCCEEEeccC---CCHHHHHHHHHh
Q 012815 249 FADAGADVLFIDAL---ASKEEMKAFCEI 274 (456)
Q Consensus 249 y~eAGAD~Ifie~~---~s~eei~~i~~~ 274 (456)
+..+|||+|-+-.. ...+.+.++.++
T Consensus 255 ~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~ 283 (325)
T cd04739 255 YLLAGADVVMTTSALLRHGPDYIGTLLAG 283 (325)
T ss_pred HHHcCCCeeEEehhhhhcCchHHHHHHHH
Confidence 55699999987531 123445555544
No 199
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=93.85 E-value=6.4 Score=38.74 Aligned_cols=175 Identities=21% Similarity=0.274 Sum_probs=100.9
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCC------------CCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCH-HH--
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTG------------FISYGEMVDQGQLITQAVSIPVIGDGDNGYGNA-MN-- 166 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~------------~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~-~n-- 166 (456)
++.++++|+|++-+. .-.| -..-|+. .++++..++.++.+.+.+++|++. ..|-|+ .+
T Consensus 20 ~~~l~~~Gad~iel~-iPfs---dPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~l---m~y~n~~~~~G 92 (242)
T cd04724 20 LKALVEAGADIIELG-IPFS---DPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVL---MGYYNPILQYG 92 (242)
T ss_pred HHHHHHCCCCEEEEC-CCCC---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEE---EEecCHHHHhC
Confidence 456777888888877 1111 1222322 234667888889998877899654 135454 11
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEE-EEecchhhcccHHHHHHH
Q 012815 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VARTDSRQALSLEESLRR 245 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvI-iARTDA~~~~~ldeAI~R 245 (456)
+.+.++.+.++|++|+.+=|- |.||...-++.+++ .|.+.++ ++-+-. .+|
T Consensus 93 ~~~fi~~~~~aG~~giiipDl---------------~~ee~~~~~~~~~~----~g~~~i~~i~P~T~---------~~~ 144 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDL---------------PPEEAEEFREAAKE----YGLDLIFLVAPTTP---------DER 144 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCC---------------CHHHHHHHHHHHHH----cCCcEEEEeCCCCC---------HHH
Confidence 456788999999999999774 22433333333332 2443333 332221 366
Q ss_pred HHHhHhcCCCEEEecc---C---CC------HHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchH
Q 012815 246 SRAFADAGADVLFIDA---L---AS------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (456)
Q Consensus 246 akAy~eAGAD~Ifie~---~---~s------~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~l 313 (456)
.+.+.+...+.|++-+ . .+ .+.++++.+.. .+|+.+ ++|-...-+.+++.+. +..++.|+.+
T Consensus 145 i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~~pI~v----ggGI~~~e~~~~~~~~-ADgvVvGSai 218 (242)
T cd04724 145 IKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT-DLPIAV----GFGISTPEQAAEVAKY-ADGVIVGSAL 218 (242)
T ss_pred HHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC-CCcEEE----EccCCCHHHHHHHHcc-CCEEEECHHH
Confidence 7777775677766532 1 11 23445555543 356543 2343222246788888 9999999877
Q ss_pred HHHH
Q 012815 314 IGVS 317 (456)
Q Consensus 314 l~aa 317 (456)
++..
T Consensus 219 v~~~ 222 (242)
T cd04724 219 VKII 222 (242)
T ss_pred HHHH
Confidence 6543
No 200
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.85 E-value=0.86 Score=46.14 Aligned_cols=149 Identities=11% Similarity=0.010 Sum_probs=88.7
Q ss_pred CCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHh--CccEEEeC
Q 012815 109 GFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA--GFAGIILE 185 (456)
Q Consensus 109 GfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~A--GaaGI~IE 185 (456)
|+|++=+- |.-.. .|..+.+ .+.+.+.+.++++.+.+++||++=+--++ +..++.+.++.+.++ |++||.+=
T Consensus 119 ~ad~ielN~sCPn~---~~~~~~~-~~~~~~~~i~~~v~~~~~iPv~vKl~p~~-~~~~~~~~a~~l~~~~~G~~gi~~~ 193 (294)
T cd04741 119 FPLAMELNLSCPNV---PGKPPPA-YDFDATLEYLTAVKAAYSIPVGVKTPPYT-DPAQFDTLAEALNAFACPISFITAT 193 (294)
T ss_pred cccEEEEECCCCCC---CCccccc-CCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CHHHHHHHHHHHhccccCCcEEEEE
Confidence 67877664 32211 1333322 35677888888888888999999997765 556778888888888 99999853
Q ss_pred CCC-----------CCC---CccC--CCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHh
Q 012815 186 DQV-----------SPK---GCGH--TRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (456)
Q Consensus 186 Dq~-----------~pK---~CGH--~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy 249 (456)
... .|. ..++ ..|+.+.|. ..+.|+.++++ .+.++-|+|=.+-... +.+..|
T Consensus 194 Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~--al~~v~~~~~~---~~~~ipIig~GGI~s~-------~da~e~ 261 (294)
T cd04741 194 NTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPL--ALGNVRTFRRL---LPSEIQIIGVGGVLDG-------RGAFRM 261 (294)
T ss_pred ccCCccccccCCCCCcccCCCCCCCCcCchhhHHH--HHHHHHHHHHh---cCCCCCEEEeCCCCCH-------HHHHHH
Confidence 222 110 1211 234444443 23344433333 3335778887776543 445666
Q ss_pred HhcCCCEEEecc--C-CCHHHHHHHHHh
Q 012815 250 ADAGADVLFIDA--L-ASKEEMKAFCEI 274 (456)
Q Consensus 250 ~eAGAD~Ifie~--~-~s~eei~~i~~~ 274 (456)
..||||+|.+-. + .....++++.+.
T Consensus 262 l~aGA~~Vqv~ta~~~~gp~~~~~i~~~ 289 (294)
T cd04741 262 RLAGASAVQVGTALGKEGPKVFARIEKE 289 (294)
T ss_pred HHcCCCceeEchhhhhcCchHHHHHHHH
Confidence 779999998743 2 244555555544
No 201
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=93.82 E-value=2.2 Score=39.93 Aligned_cols=168 Identities=16% Similarity=0.174 Sum_probs=86.0
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
.++.++++|++.|-+. ++ ...-.|... .-++.++.|++.++.|+.+|.= .| ++. +-++.+.++|++
T Consensus 16 ~~~~~~~~g~d~i~~~---~~-Dg~~~~~~~-----~~~~~v~~i~~~~~~~v~v~lm-~~-~~~---~~~~~~~~~gad 81 (210)
T TIGR01163 16 EVKAVEEAGADWIHVD---VM-DGHFVPNLT-----FGPPVLEALRKYTDLPIDVHLM-VE-NPD---RYIEDFAEAGAD 81 (210)
T ss_pred HHHHHHHcCCCEEEEc---CC-CCCCCCCcc-----cCHHHHHHHHhcCCCcEEEEee-eC-CHH---HHHHHHHHcCCC
Confidence 3566778899999875 21 111123222 2335566676666778654431 12 332 346777899999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie 260 (456)
||++=+.. .++....++.+++. |..+.+.--.+. . .++.++|. .++|.+.+-
T Consensus 82 gv~vh~~~---------------~~~~~~~~~~~~~~----g~~~~~~~~~~t----~----~e~~~~~~-~~~d~i~~~ 133 (210)
T TIGR01163 82 IITVHPEA---------------SEHIHRLLQLIKDL----GAKAGIVLNPAT----P----LEFLEYVL-PDVDLVLLM 133 (210)
T ss_pred EEEEccCC---------------chhHHHHHHHHHHc----CCcEEEEECCCC----C----HHHHHHHH-hhCCEEEEE
Confidence 98884421 12333333333322 334433311111 1 35566664 468987662
Q ss_pred cC----C-------CHHHHHHHHHhCC----CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 261 AL----A-------SKEEMKAFCEISP----LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 261 ~~----~-------s~eei~~i~~~v~----~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
+. . ..+.++++.+.+. .+|.. ..||-++ =+..++.+.|+..++.+..++.
T Consensus 134 ~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~----v~GGI~~-env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 134 SVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIE----VDGGVND-DNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred EEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEE----EECCcCH-HHHHHHHHcCCCEEEEChHHhC
Confidence 21 1 1123333433221 12322 2234333 3456777889999999987764
No 202
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=93.80 E-value=1.3 Score=43.15 Aligned_cols=170 Identities=18% Similarity=0.166 Sum_probs=98.8
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
|+.+.++|.|++.+||. .| ++.+.+.+.+++|.+.+++||+. .+ |+..++. -+|++
T Consensus 17 a~~v~~~gtDaI~VGGS------~g------vt~~~~~~~v~~ik~~~~lPvil-fp---~~~~~i~--------~~aD~ 72 (205)
T TIGR01769 17 AKNAKDAGTDAIMVGGS------LG------IVESNLDQTVKKIKKITNLPVIL-FP---GNVNGLS--------RYADA 72 (205)
T ss_pred HHHHHhcCCCEEEEcCc------CC------CCHHHHHHHHHHHHhhcCCCEEE-EC---CCccccC--------cCCCE
Confidence 44677899999999973 12 47788888888888888999998 22 3333332 35777
Q ss_pred EEeCCCCCCCCccCCCCccccCHHHHHHHHHHH---HHHhHh-hCCCeEEE------Ee-cchhh--cccHHHHHHHHHH
Q 012815 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAA---VDARKE-SGSDIVIV------AR-TDSRQ--ALSLEESLRRSRA 248 (456)
Q Consensus 182 I~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA---~~Ar~~-~G~dfvIi------AR-TDA~~--~~~ldeAI~RakA 248 (456)
+.+=-=.. + .+-.=++-. .+.++ ++-..+ ....++|+ ++ |++.. ....|++..-+.+
T Consensus 73 ~~~~slln----s-~~~~~i~g~-----~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~a 142 (205)
T TIGR01769 73 VFFMSLLN----S-ADTYFIVGA-----QILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLA 142 (205)
T ss_pred EEEEEeec----C-CCcchhhhH-----HHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHH
Confidence 76632110 0 000001111 11222 111111 11134433 11 23321 2467888888999
Q ss_pred hHhcCCCEEEeccC------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEecc
Q 012815 249 FADAGADVLFIDAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (456)
Q Consensus 249 y~eAGAD~Ifie~~------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p 310 (456)
....|++.||++.. .+.+.++++.+... +|+.+ ++|-...-..+++.+.|+..|+.|
T Consensus 143 a~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~-~Pv~v----GGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 143 AKYFGMKWVYLEAGSGASYPVNPETISLVKKASG-IPLIV----GGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhC-CCEEE----eCCCCCHHHHHHHHHcCCCEEEeC
Confidence 99999999999873 45778888888775 67653 333221123455666689888764
No 203
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=93.76 E-value=7.1 Score=41.51 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=83.1
Q ss_pred HHHHHHHHHhccC-CcEEEeCCC-CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHH
Q 012815 138 MVDQGQLITQAVS-IPVIGDGDN-GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (456)
Q Consensus 138 ml~~~r~I~ra~~-iPVIaD~Dt-GYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~ 215 (456)
-...++.+++... ..++.|+-. +.|+ .-++.+.++|+.+||+-++. + ++.. ..++
T Consensus 44 ~~~~i~~l~~~~~~~~ii~D~kl~d~g~-----~~v~~a~~aGAdgV~v~g~~------~---------~~~~---~~~i 100 (430)
T PRK07028 44 GMNAIRTLRKNFPDHTIVADMKTMDTGA-----IEVEMAAKAGADIVCILGLA------D---------DSTI---EDAV 100 (430)
T ss_pred hHHHHHHHHHHCCCCEEEEEeeeccchH-----HHHHHHHHcCCCEEEEecCC------C---------hHHH---HHHH
Confidence 3567778877654 456677333 1221 26678889999999986542 0 1111 1122
Q ss_pred HHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEecc--------CCCHHHHHHHHHhCCCCceeeeeecc
Q 012815 216 DARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA--------LASKEEMKAFCEISPLVPKMANMLEG 287 (456)
Q Consensus 216 ~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~--------~~s~eei~~i~~~v~~vP~~~N~~~~ 287 (456)
+..++.|..+.+-.-|- ...+++++.+.++|+|.|-+.. ....+.++++.+.++ +|+.+ .
T Consensus 101 ~~a~~~G~~~~~g~~s~-------~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~-iPI~a----~ 168 (430)
T PRK07028 101 RAARKYGVRLMADLINV-------PDPVKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVS-IPIAV----A 168 (430)
T ss_pred HHHHHcCCEEEEEecCC-------CCHHHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhhCC-CcEEE----E
Confidence 22222344433311121 1124678888899999986532 122467777777655 56543 2
Q ss_pred CCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 288 GGKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 288 ~g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
+|-++ -+..++.+.|+..++.+..++.+
T Consensus 169 GGI~~-~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 169 GGLDA-ETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred CCCCH-HHHHHHHHcCCCEEEEChHHcCC
Confidence 34322 24577888999999999988764
No 204
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=93.75 E-value=2.4 Score=44.80 Aligned_cols=135 Identities=21% Similarity=0.261 Sum_probs=72.4
Q ss_pred HHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012815 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGa 179 (456)
--+++++++|.+++.+.+--.+.. +...+ -.+.++.+ +.+..++|||+ .+-.+ .+.++++.++||
T Consensus 146 e~a~~l~eAGad~I~ihgrt~~q~-~~sg~---~~p~~l~~----~i~~~~IPVI~---G~V~t----~e~A~~~~~aGa 210 (369)
T TIGR01304 146 EIAPIVVKAGADLLVIQGTLVSAE-HVSTS---GEPLNLKE----FIGELDVPVIA---GGVND----YTTALHLMRTGA 210 (369)
T ss_pred HHHHHHHHCCCCEEEEeccchhhh-ccCCC---CCHHHHHH----HHHHCCCCEEE---eCCCC----HHHHHHHHHcCC
Confidence 456888999999999986554421 21111 12334333 33446899998 11123 344456667999
Q ss_pred cEEEeCCCCCCCCccCCCCccc---cCHHHHHHHHHHHHHH-hHhhCC-CeEEEEecchhhcccHHHHHHHHHHhHhcCC
Q 012815 180 AGIILEDQVSPKGCGHTRGRKV---VSREEAVMRIKAAVDA-RKESGS-DIVIVARTDSRQALSLEESLRRSRAFADAGA 254 (456)
Q Consensus 180 aGI~IEDq~~pK~CGH~~gk~l---vp~ee~v~kI~AA~~A-r~~~G~-dfvIiARTDA~~~~~ldeAI~RakAy~eAGA 254 (456)
++|.+=-. .+|.....+ +|..+.+..+.++++- .++.+. ..-|+|=---.. + -+=+++ .++||
T Consensus 211 DgV~~G~g-----g~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t--g----~di~kA-lAlGA 278 (369)
T TIGR01304 211 AGVIVGPG-----GANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIET--S----GDLVKA-IACGA 278 (369)
T ss_pred CEEEECCC-----CCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC--H----HHHHHH-HHcCC
Confidence 99983211 123332222 6766666666555432 223332 355555322211 1 122333 35899
Q ss_pred CEEEecc
Q 012815 255 DVLFIDA 261 (456)
Q Consensus 255 D~Ifie~ 261 (456)
|+|++-.
T Consensus 279 daV~iGt 285 (369)
T TIGR01304 279 DAVVLGS 285 (369)
T ss_pred CEeeeHH
Confidence 9999854
No 205
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.74 E-value=2.9 Score=42.11 Aligned_cols=129 Identities=22% Similarity=0.235 Sum_probs=83.9
Q ss_pred CCCCHHHHHHHHHHHHHh-CccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE-Eecchhhcc
Q 012815 160 GYGNAMNVKRTVKGYIKA-GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV-ARTDSRQAL 237 (456)
Q Consensus 160 GYG~~~nv~rtVk~l~~A-GaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi-ARTDA~~~~ 237 (456)
|--+++++.++++..-|+ |-.=|+||=-. +.+-+.| +..+.|+++..-.+ .+|.++ -=+|.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~--------d~~~llp--d~~~tv~aa~~L~~---~Gf~vlpyc~~d---- 133 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIG--------DDKTLLP--DPIETLKAAEILVK---EGFVVLPYCTDD---- 133 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEec--------CCCCCCc--CHHHHHHHHHHHHH---CCCEEEEEeCCC----
Confidence 333667777777666663 56778887431 2222333 34666777766654 478888 44554
Q ss_pred cHHHHHHHHHHhHhcCCCEEEec--------cCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEec
Q 012815 238 SLEESLRRSRAFADAGADVLFID--------ALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (456)
Q Consensus 238 ~ldeAI~RakAy~eAGAD~Ifie--------~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~ 309 (456)
+.-|++++++|+|+|.+. ++.+.+.++.+.+..+ +|+++. ++=.+| -...+..++|+.-|..
T Consensus 134 -----~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~-vpVIve---aGI~tp-eda~~AmelGAdgVlV 203 (250)
T PRK00208 134 -----PVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQAD-VPVIVD---AGIGTP-SDAAQAMELGADAVLL 203 (250)
T ss_pred -----HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcC-CeEEEe---CCCCCH-HHHHHHHHcCCCEEEE
Confidence 356999999999999762 3446788888888744 776543 322222 2346677899999999
Q ss_pred cchHHH
Q 012815 310 PLSLIG 315 (456)
Q Consensus 310 p~~ll~ 315 (456)
+....+
T Consensus 204 ~SAItk 209 (250)
T PRK00208 204 NTAIAV 209 (250)
T ss_pred ChHhhC
Confidence 888765
No 206
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=93.71 E-value=1.3 Score=44.55 Aligned_cols=160 Identities=20% Similarity=0.185 Sum_probs=84.4
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhccc-CCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCC-HHHHHHHH-HHHHHh
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLAL-PDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN-AMNVKRTV-KGYIKA 177 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~-PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~-~~nv~rtV-k~l~~A 177 (456)
-|+.+++.|+|+|.+.=+.- ..| ++.+..|..-|-..++++.+.+++|+=++.=.-=+- +..++..+ -.|++.
T Consensus 33 ea~~l~~~GvD~viveN~~d----~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv 108 (257)
T TIGR00259 33 DAMALEEGGVDAVMFENFFD----APFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRV 108 (257)
T ss_pred HHHHHHhCCCCEEEEecCCC----CCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEE
Confidence 46778899999999974331 122 133444555666667778888888953332221011 12222222 233333
Q ss_pred -CccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh-----hcccHHHHHHHHHHhHh
Q 012815 178 -GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-----QALSLEESLRRSRAFAD 251 (456)
Q Consensus 178 -GaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~-----~~~~ldeAI~RakAy~e 251 (456)
...|.+.-|+-....|. .|. -|. |+.++.+..|.|-.... ...+++|+.+.+. ..
T Consensus 109 ~~~~g~~~~d~G~~~~~a----------~e~-~r~------r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~--~~ 169 (257)
T TIGR00259 109 NVLTGVYASDQGIIEGNA----------GEL-IRY------KKLLGSEVKILADIVVKHAVHLGNRDLESIALDTV--ER 169 (257)
T ss_pred ccEeeeEecccccccccH----------HHH-HHH------HHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHH--Hh
Confidence 34444444442111111 111 122 33345566776644332 2345666555433 22
Q ss_pred cCCCEEEeccC-----CCHHHHHHHHHhCCCCceeee
Q 012815 252 AGADVLFIDAL-----ASKEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 252 AGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N 283 (456)
.+||+|++-+. .+.++++++.+..+.+|++++
T Consensus 170 ~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvllg 206 (257)
T TIGR00259 170 GLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAG 206 (257)
T ss_pred cCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEE
Confidence 34899999874 567888888776665676543
No 207
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=93.67 E-value=1.1 Score=45.12 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=90.5
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCC-CCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPD-TGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD-~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGa 179 (456)
-|+.+++.|+|+|.+.=+.- ..|+- .+..+..-|-..++.+.+.+++|+=++.-.- ++ ..+..-...+|+
T Consensus 34 ea~~l~~~GvDgiiveN~~D----~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~n--d~---~aalaiA~A~ga 104 (254)
T PF03437_consen 34 EAEALEEGGVDGIIVENMGD----VPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRN--DP---KAALAIAAATGA 104 (254)
T ss_pred HHHHHHHCCCCEEEEecCCC----CCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecC--CC---HHHHHHHHHhCC
Confidence 46788999999999884331 12221 2333444566667777788888875554432 11 111222233566
Q ss_pred cEEEeCCCCCCCCccCCCC-ccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh-----hcccHHHHHHHHHHhHhcC
Q 012815 180 AGIILEDQVSPKGCGHTRG-RKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-----QALSLEESLRRSRAFADAG 253 (456)
Q Consensus 180 aGI~IEDq~~pK~CGH~~g-k~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~-----~~~~ldeAI~RakAy~eAG 253 (456)
+=|.+|-= ||+.-+ .-++... +.. +.+-|+.++.+..|.|=.... ...+++|+.+. +....+
T Consensus 105 ~FIRv~~~-----~g~~~~d~G~~~~~--a~e---~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~--a~~~~~ 172 (254)
T PF03437_consen 105 DFIRVNVF-----VGAYVTDEGIIEGC--AGE---LLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKD--AVERGG 172 (254)
T ss_pred CEEEecCE-----EceecccCcccccc--HHH---HHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHH--HHHhcC
Confidence 66655422 222111 0121111 111 122344456677777744432 22457776554 334588
Q ss_pred CCEEEeccC-----CCHHHHHHHHHhCCCCceeee
Q 012815 254 ADVLFIDAL-----ASKEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 254 AD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N 283 (456)
||+|++-+. ++.++++++.+..+ +|++++
T Consensus 173 aDaviVtG~~TG~~~~~~~l~~vr~~~~-~PVlvG 206 (254)
T PF03437_consen 173 ADAVIVTGKATGEPPDPEKLKRVREAVP-VPVLVG 206 (254)
T ss_pred CCEEEECCcccCCCCCHHHHHHHHhcCC-CCEEEe
Confidence 999999874 57889999999988 888764
No 208
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=93.63 E-value=1.1 Score=44.17 Aligned_cols=97 Identities=14% Similarity=0.241 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHH
Q 012815 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (456)
Q Consensus 134 t~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~A 213 (456)
..+.+.+.++.+.+ +++||++=+-.|+- .+..+.++.++++|+++||+... .+ | + .++. +.|+.
T Consensus 124 ~p~~l~eiv~avr~-~~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~~~-~~---g---~--~ad~----~~I~~ 187 (233)
T cd02911 124 DPERLSEFIKALKE-TGVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVDAM-DP---G---N--HADL----KKIRD 187 (233)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEECcC-CC---C---C--CCcH----HHHHH
Confidence 45566666777766 58999999988874 45667788999999999999432 11 1 0 1122 23332
Q ss_pred HHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec
Q 012815 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (456)
Q Consensus 214 A~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie 260 (456)
++ .+.-|++--+-.. .+.++.+.+.|||+|++-
T Consensus 188 i~-------~~ipVIgnGgI~s-------~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 188 IS-------TELFIIGNNSVTT-------IESAKEMFSYGADMVSVA 220 (233)
T ss_pred hc-------CCCEEEEECCcCC-------HHHHHHHHHcCCCEEEEc
Confidence 22 1345555444432 255666777899999984
No 209
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=93.60 E-value=2.4 Score=41.52 Aligned_cols=146 Identities=20% Similarity=0.235 Sum_probs=89.6
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE
Q 012815 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (456)
Q Consensus 150 ~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA 229 (456)
.+++|.|-...+..... .+.+.+..+.|+..+++=++. ... ... .+.+.+++.++.. -+..|+|+.
T Consensus 7 ~lylvt~~~~~~~~~~~-~~~ve~al~~Gv~~vQlR~K~------~~~-~~~---~~~a~~~~~lc~~---~~v~liINd 72 (211)
T COG0352 7 RLYLVTDRPLIYDGVDL-LEWVEAALKGGVTAVQLREKD------LSD-EEY---LALAEKLRALCQK---YGVPLIIND 72 (211)
T ss_pred ceEEEcCCccccccchh-HHHHHHHHhCCCeEEEEecCC------CCh-HHH---HHHHHHHHHHHHH---hCCeEEecC
Confidence 46677777766643322 788889999999999998874 111 000 2334455444444 457899999
Q ss_pred ecchhhc----------cc--HHH----------------HHHHHHHhHhcCCCEEEeccC-----------CCHHHHHH
Q 012815 230 RTDSRQA----------LS--LEE----------------SLRRSRAFADAGADVLFIDAL-----------ASKEEMKA 270 (456)
Q Consensus 230 RTDA~~~----------~~--lde----------------AI~RakAy~eAGAD~Ifie~~-----------~s~eei~~ 270 (456)
|.|--.. .+ +.+ -++.++..++.|||.|++-.+ ...+-++.
T Consensus 73 ~~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~ 152 (211)
T COG0352 73 RVDLALAVGADGVHLGQDDMPLAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLRE 152 (211)
T ss_pred cHHHHHhCCCCEEEcCCcccchHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHH
Confidence 9886320 00 111 234566667789999987532 12456666
Q ss_pred HHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 271 FCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 271 i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
+.+..+ +|+. .+ ||-++ -+..++.+.|+..|..-...+.
T Consensus 153 ~~~~~~-iP~v--AI--GGi~~-~nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 153 IRELVN-IPVV--AI--GGINL-ENVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHhCC-CCEE--EE--cCCCH-HHHHHHHHhCCCeEEehhHhhc
Confidence 666555 6643 22 34332 4568999999998877665554
No 210
>PRK07695 transcriptional regulator TenI; Provisional
Probab=93.60 E-value=5.1 Score=37.90 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHhcc--CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHH
Q 012815 133 ISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMR 210 (456)
Q Consensus 133 lt~~Eml~~~r~I~ra~--~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~k 210 (456)
.+.+++...++.+.+.. ..++++.-+ +....+.|++|+|+.... .+.++
T Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~liin~~------------~~la~~~~~~gvHl~~~~-------------~~~~~---- 88 (201)
T PRK07695 38 KSAKELYEGVESLLKKGVPASKLIINDR------------VDIALLLNIHRVQLGYRS-------------FSVRS---- 88 (201)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEECH------------HHHHHHcCCCEEEeCccc-------------CCHHH----
Confidence 57777777777776542 245777621 234456799999995431 11111
Q ss_pred HHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC-----------CCHHHHHHHHHhCCCCc
Q 012815 211 IKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISPLVP 279 (456)
Q Consensus 211 I~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~-----------~s~eei~~i~~~v~~vP 279 (456)
+ ++.. ++..|-+.+. .+ +.++...++|||.|++..+ ...+.++++.+.++ +|
T Consensus 89 ---~---r~~~-~~~~ig~s~~-----s~----e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~-ip 151 (201)
T PRK07695 89 ---V---REKF-PYLHVGYSVH-----SL----EEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALS-IP 151 (201)
T ss_pred ---H---HHhC-CCCEEEEeCC-----CH----HHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCC-CC
Confidence 1 1112 3555555332 22 3456677899999986431 23467777877665 66
Q ss_pred eeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 280 KMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 280 ~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
+.+. ||-+| -+..++.+.|+..|..+..++.
T Consensus 152 via~----GGI~~-~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 152 VIAI----GGITP-ENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred EEEE----cCCCH-HHHHHHHHcCCCEEEEEHHHhc
Confidence 6532 34332 3468888999999988887764
No 211
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=93.59 E-value=1.2 Score=46.41 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=101.9
Q ss_pred ccccCCCCCccceeecceeeeecccchh--hhhcccCCCCcccccccccCCCccccccccHHHHHHHHHhCCCcee-ecc
Q 012815 19 LFHSNSRPSSFLGINNNTISFNKTNTNT--LLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQ-GPA 95 (456)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pr~~~~~R~y~~~s~~~~~a~~~a~~Lr~ll~~~~~lv-~pg 95 (456)
+|-..-+++.+-+++|-+=-.+-+.+.. .+......-+|..+. +........+--...-+.-++|.++ ++.+ ..+
T Consensus 127 ~~~~~~~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlE-vi~e~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc 204 (326)
T PRK11840 127 MLTDYIDPKKYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLE-VLGDAKTLYPDMVETLKATEILVKE-GFQVMVYC 204 (326)
T ss_pred hHHHhhhhcCCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEE-EcCCCCCcccCHHHHHHHHHHHHHC-CCEEEEEe
Confidence 3444445567777788765544444333 455556666777763 2221111111111223445555544 4666 568
Q ss_pred cCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012815 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (456)
Q Consensus 96 ayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~ 175 (456)
+=|...|+.++++|+-++.--+.-+. +-.|+ + -.+.++.+++..++||++| .|-|.+.+++ ...
T Consensus 205 ~~d~~~a~~l~~~g~~avmPl~~pIG-sg~gv------~---~p~~i~~~~e~~~vpVivd--AGIg~~sda~----~Am 268 (326)
T PRK11840 205 SDDPIAAKRLEDAGAVAVMPLGAPIG-SGLGI------Q---NPYTIRLIVEGATVPVLVD--AGVGTASDAA----VAM 268 (326)
T ss_pred CCCHHHHHHHHhcCCEEEeecccccc-CCCCC------C---CHHHHHHHHHcCCCcEEEe--CCCCCHHHHH----HHH
Confidence 88999999999999966554222221 22232 2 2345566666678999999 5677776766 455
Q ss_pred HhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 176 ~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
+.|++||-+--.+. + --++-.|++-.+.|++|.+
T Consensus 269 elGadgVL~nSaIa--~--------a~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 269 ELGCDGVLMNTAIA--E--------AKNPVLMARAMKLAVEAGR 302 (326)
T ss_pred HcCCCEEEEcceec--c--------CCCHHHHHHHHHHHHHHHH
Confidence 68999999866542 0 1134567777777777765
No 212
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.58 E-value=3.9 Score=40.24 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=82.4
Q ss_pred HHHHHHHhccCCcEEEeCCCCCCCH--HHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHH
Q 012815 140 DQGQLITQAVSIPVIGDGDNGYGNA--MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA 217 (456)
Q Consensus 140 ~~~r~I~ra~~iPVIaD~DtGYG~~--~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~A 217 (456)
+.++.+++.+++|++. .+|-++ .+..+.++.+.++|++|+.|=|-. +-..++..+-++.+
T Consensus 64 ~~v~~vr~~~~~Pl~l---M~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp------------~e~~~~~~~~~~~~--- 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIIL---MTYLEDYVDSLDNFLNMARDVGADGVLFPDLL------------IDYPDDLEKYVEII--- 125 (244)
T ss_pred HHHHHHhccCCCCEEE---EEecchhhhCHHHHHHHHHHcCCCEEEECCCC------------CCcHHHHHHHHHHH---
Confidence 5777887778899741 124443 346677888999999999996531 00112222222222
Q ss_pred hHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCC---------C-HHHHHHHHHhCCCCceeeeeecc
Q 012815 218 RKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA---------S-KEEMKAFCEISPLVPKMANMLEG 287 (456)
Q Consensus 218 r~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~---------s-~eei~~i~~~v~~vP~~~N~~~~ 287 (456)
++.|-+.++....... ++|.+.+.+.....+++ ++. + .+.++++.+..+..|+. +.+
T Consensus 126 -~~~Gl~~~~~v~p~T~--------~e~l~~~~~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~---v~g 192 (244)
T PRK13125 126 -KNKGLKPVFFTSPKFP--------DLLIHRLSKLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLV---VGF 192 (244)
T ss_pred -HHcCCCEEEEECCCCC--------HHHHHHHHHhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEE---EeC
Confidence 3335555554443322 36777888886667765 421 1 12444444444333432 233
Q ss_pred CCC-CCCCCHHHHHhcCCCEEeccchHHH
Q 012815 288 GGK-TPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 288 ~g~-tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
|- ++ =+.+++.+.|++-++.|..+++
T Consensus 193 -GI~~~-e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 193 -GLDSP-EDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred -CcCCH-HHHHHHHHcCCCEEEECHHHHH
Confidence 43 32 2457778899999999998876
No 213
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=93.55 E-value=4.2 Score=45.38 Aligned_cols=273 Identities=19% Similarity=0.220 Sum_probs=145.1
Q ss_pred HHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE--EeCCC--CCCC-HHH-HHHHHHH
Q 012815 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI--GDGDN--GYGN-AMN-VKRTVKG 173 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI--aD~Dt--GYG~-~~n-v~rtVk~ 173 (456)
.-|..+.++||+.|=++|.+.-.+ .++=.. -+-.|.+..++... .++++. +-..+ ||-+ +.+ +.+-+++
T Consensus 25 ~ia~~L~~~Gv~~IE~~GGatfd~--~~~f~~-e~~~e~l~~l~~~~--~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~ 99 (582)
T TIGR01108 25 PIAEKLDDVGYWSLEVWGGATFDA--CIRFLN-EDPWERLRELKKAL--PNTPLQMLLRGQNLLGYRHYADDVVERFVKK 99 (582)
T ss_pred HHHHHHHHcCCCEEEecCCccccc--ccccCC-CCHHHHHHHHHHhC--CCCEEEEEEccccccccccCchhhHHHHHHH
Confidence 345667888999998864222111 111111 11234444443322 234444 34555 5654 555 5566888
Q ss_pred HHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE---EecchhhcccHHHHHHHHHHhH
Q 012815 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV---ARTDSRQALSLEESLRRSRAFA 250 (456)
Q Consensus 174 l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi---ARTDA~~~~~ldeAI~RakAy~ 250 (456)
..++|++-++|=|... +. +.++.+++..++.|. .+. .-|++- ...++.-++-++++.
T Consensus 100 a~~~Gvd~irif~~ln-------------d~----~n~~~~i~~ak~~G~--~v~~~i~~t~~p-~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 100 AVENGMDVFRIFDALN-------------DP----RNLQAAIQAAKKHGA--HAQGTISYTTSP-VHTLETYLDLAEELL 159 (582)
T ss_pred HHHCCCCEEEEEEecC-------------cH----HHHHHHHHHHHHcCC--EEEEEEEeccCC-CCCHHHHHHHHHHHH
Confidence 8999999999988641 11 234444444444442 232 223321 246788889999999
Q ss_pred hcCCCEEEec---cCCCHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCH---HHHHhcCCCEEeccchHH--HHHHHHH
Q 012815 251 DAGADVLFID---ALASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNP---LELEELGFKLVAYPLSLI--GVSVRAM 321 (456)
Q Consensus 251 eAGAD~Ifie---~~~s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~---~eL~elGv~~Vs~p~~ll--~aa~~A~ 321 (456)
++|||.|.+- |.-.++++.++.+.+. .+|+++.+ +.+ .+..+.. -.--+.|+..|-.....+ ++.-.++
T Consensus 160 ~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~-H~H-nt~Gla~An~laAveaGa~~vd~ai~GlG~~tGn~~l 237 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHL-HSH-ATTGMAEMALLKAIEAGADGIDTAISSMSGGTSHPPT 237 (582)
T ss_pred HcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEE-Eec-CCCCcHHHHHHHHHHhCCCEEEeccccccccccChhH
Confidence 9999999885 3445566665554421 12233332 221 1233332 445578998886644433 4445556
Q ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHcccccccCccccCCCCCCCCCcceeeEEEEEEecCCCceeec
Q 012815 322 QDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENGGSRDAFSGIWSRTLRVKITGRDGFEKLD 401 (456)
Q Consensus 322 ~~~l~~i~~g~~~~~~~~~~~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (456)
++.+..|+..+.+ ....++.+.++ -+.+.+..++|...+..... . . .+.|+=
T Consensus 238 e~vv~~L~~~g~~---tgid~~~L~~l--~~~~~~v~~~Y~~~~~~~~~-~-------~---~~v~~~------------ 289 (582)
T TIGR01108 238 ETMVAALRGTGYD---TGLDIELLLEI--AAYFREVRKKYSQFEGQLKG-P-------D---SRILVA------------ 289 (582)
T ss_pred HHHHHHHHhcCCC---cccCHHHHHHH--HHHHHHHHHHhhcCCCcccC-C-------C---ccEEEE------------
Confidence 6666666542222 12445555555 22355566677654322221 0 0 133333
Q ss_pred cccCcccchhhhhhccccccccHHHHhhhh
Q 012815 402 VRIPAGFLDGITNVVPALGGVNLKELLNDA 431 (456)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (456)
-||-|- +||++.++--.++.+++++.
T Consensus 290 -e~pGG~---~snl~~ql~~~g~~~~~~~v 315 (582)
T TIGR01108 290 -QVPGGM---LSNLESQLKEQNALDKLDEV 315 (582)
T ss_pred -cCCCch---HHHHHHHHHHCCCHHHHHHH
Confidence 345443 47777777777776666554
No 214
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.51 E-value=4.1 Score=41.91 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=57.8
Q ss_pred HHHHHHHHhCCcEEEecc---hHHhhh----hcccCCCCCCCHHH----HHHHHHHHHhcc--CCcEEEeCC------CC
Q 012815 100 LSAKLVEKSGFSFCFTSG---FSISAA----RLALPDTGFISYGE----MVDQGQLITQAV--SIPVIGDGD------NG 160 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG---~avSas----~lG~PD~~~lt~~E----ml~~~r~I~ra~--~iPVIaD~D------tG 160 (456)
-+|+.+.++|||+|-+-+ +-+.-. ..=.-|.--=+++. .++.+++|.+++ +.||.+|+- .|
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g 232 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGG 232 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCC
Confidence 577888999999998763 332211 00111321114443 455677777777 489999984 45
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCC
Q 012815 161 YGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (456)
Q Consensus 161 YG~~~nv~rtVk~l~~AGaaGI~IEDq~ 188 (456)
+ +.+...+.++.++++|++-|++-...
T Consensus 233 ~-~~eea~~ia~~Le~~Gvd~iev~~g~ 259 (338)
T cd04733 233 F-TEEDALEVVEALEEAGVDLVELSGGT 259 (338)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 4 46678889999999999999886553
No 215
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=93.50 E-value=1.9 Score=44.32 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=86.2
Q ss_pred HHHHHHHhCCcEEEec-chHHhh-hhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCC-HHHHHHHHHHHHHh
Q 012815 101 SAKLVEKSGFSFCFTS-GFSISA-ARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN-AMNVKRTVKGYIKA 177 (456)
Q Consensus 101 SArl~e~aGfdAI~vS-G~avSa-s~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~-~~nv~rtVk~l~~A 177 (456)
.|+++++.||+.|=+- |--..- ...|.=..-+-..+.+.+.++.+.+++++||.+=+-.||-. ..+..+.++.++++
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~ 161 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC 161 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh
Confidence 3666677899888765 211110 01122111122455566677788888899999988888754 34678888999999
Q ss_pred CccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhH-hcCCCE
Q 012815 178 GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA-DAGADV 256 (456)
Q Consensus 178 GaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~-eAGAD~ 256 (456)
|+++|.+...+.+.. + .|.. + -+++.+|+. + .++-|++--|-... +.++.+. +.|||+
T Consensus 162 G~d~i~vh~rt~~~~--~-~G~a--~-~~~i~~ik~---~-----~~iPVI~nGgI~s~-------~da~~~l~~~gadg 220 (321)
T PRK10415 162 GIQALTIHGRTRACL--F-NGEA--E-YDSIRAVKQ---K-----VSIPVIANGDITDP-------LKARAVLDYTGADA 220 (321)
T ss_pred CCCEEEEecCccccc--c-CCCc--C-hHHHHHHHH---h-----cCCcEEEeCCCCCH-------HHHHHHHhccCCCE
Confidence 999999977642111 1 1211 2 234444433 2 23445554444432 2233333 379999
Q ss_pred EEecc--CCCHHHHHHHHH
Q 012815 257 LFIDA--LASKEEMKAFCE 273 (456)
Q Consensus 257 Ifie~--~~s~eei~~i~~ 273 (456)
|++-- +.++-.++++.+
T Consensus 221 VmiGR~~l~nP~if~~~~~ 239 (321)
T PRK10415 221 LMIGRAAQGRPWIFREIQH 239 (321)
T ss_pred EEEChHhhcCChHHHHHHH
Confidence 99852 344445555544
No 216
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=93.49 E-value=8.9 Score=38.22 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=61.8
Q ss_pred HHHHHHhCCCcee--ecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeC
Q 012815 80 SLRQILELPGVHQ--GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (456)
Q Consensus 80 ~Lr~ll~~~~~lv--~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~ 157 (456)
.|++.++++++.. .....++..+.++..+|||.|++=- . + +.++++++.+.++.+ +..+++.+|=.
T Consensus 2 ~lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~-E-----H-----g~~~~~~~~~~~~a~-~~~g~~~~VRv 69 (249)
T TIGR03239 2 RFRQDLLARETLIGCWSALGNPITTEVLGLAGFDWLLLDG-E-----H-----APNDVLTFIPQLMAL-KGSASAPVVRP 69 (249)
T ss_pred hHHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEec-c-----c-----CCCCHHHHHHHHHHH-hhcCCCcEEEC
Confidence 4788888888753 3456678899999999999999752 1 2 246677776666664 44566767766
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 158 DNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 158 DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
+.. + ...+++..++|+.||.+
T Consensus 70 p~~--~----~~~i~r~LD~Ga~gIiv 90 (249)
T TIGR03239 70 PWN--E----PVIIKRLLDIGFYNFLI 90 (249)
T ss_pred CCC--C----HHHHHHHhcCCCCEEEe
Confidence 554 3 34557788899999976
No 217
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=1.8 Score=45.30 Aligned_cols=143 Identities=19% Similarity=0.180 Sum_probs=93.5
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012815 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (456)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakA 248 (456)
+..+..+++||++|-+--+ .-|++... .-.+.+++.+-|+-|. +.|..+.|..-|=. ....++...+-.+.
T Consensus 17 ~~l~~ai~~GADaVY~G~~---~~~~R~~a-~nfs~~~l~e~i~~ah----~~gkk~~V~~N~~~-~~~~~~~~~~~l~~ 87 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEK---EFGLRRRA-LNFSVEDLAEAVELAH----SAGKKVYVAVNTLL-HNDELETLERYLDR 87 (347)
T ss_pred HHHHHHHHcCCCEEEeCCc---cccccccc-ccCCHHHHHHHHHHHH----HcCCeEEEEecccc-ccchhhHHHHHHHH
Confidence 4456777899999998555 23555443 3456676544444443 33555555554433 23345556666778
Q ss_pred hHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHH
Q 012815 249 FADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDAL 325 (456)
Q Consensus 249 y~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l 325 (456)
+.++|+|.|.+ .|+..+.-+.+..|.+|+-+..... .+...+.+-++++|++||..|.-+-..-+..+.+-.
T Consensus 88 l~e~GvDaviv---~Dpg~i~l~~e~~p~l~ih~S~q~~--v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 88 LVELGVDAVIV---ADPGLIMLARERGPDLPIHVSTQAN--VTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred HHHcCCCEEEE---cCHHHHHHHHHhCCCCcEEEeeeEe--cCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 88999999997 4556777777777777766554432 244567889999999999999887766665555544
No 218
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.44 E-value=1.1 Score=43.17 Aligned_cols=155 Identities=26% Similarity=0.317 Sum_probs=90.9
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
++.+.++|++.|=++ +|-...-+.+. +..+...... ..+.+-.. .....+.+.++.+.++|+..
T Consensus 20 ~~~L~~~Gv~~iEvg----------~~~~~~~~~~~-v~~~~~~~~~--~~~~~~~~---~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 20 AKALDEAGVDYIEVG----------FPFASEDDFEQ-VRRLREALPN--ARLQALCR---ANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp HHHHHHHTTSEEEEE----------HCTSSHHHHHH-HHHHHHHHHS--SEEEEEEE---SCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHhCCCEEEEc----------ccccCHHHHHH-hhhhhhhhcc--cccceeee---ehHHHHHHHHHhhHhccCCE
Confidence 456778899998877 11111111222 2222222222 33332222 34556777788888999999
Q ss_pred EEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec-
Q 012815 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID- 260 (456)
Q Consensus 182 I~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie- 260 (456)
+.+-+...+. |...+--.+.+++.+++..+++..++.|.+. ...=+|+ .....++.++-+++..++|+|.|.+.
T Consensus 84 i~i~~~~s~~---~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v-~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~i~l~D 158 (237)
T PF00682_consen 84 IRIFISVSDL---HIRKNLNKSREEALERIEEAVKYAKELGYEV-AFGCEDA-SRTDPEELLELAEALAEAGADIIYLAD 158 (237)
T ss_dssp EEEEEETSHH---HHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE-EEEETTT-GGSSHHHHHHHHHHHHHHT-SEEEEEE
T ss_pred EEecCcccHH---HHHHhhcCCHHHHHHHHHHHHHHHHhcCCce-EeCcccc-ccccHHHHHHHHHHHHHcCCeEEEeeC
Confidence 9998876431 2111223467889999988888888766444 2222343 33456888888999999999999875
Q ss_pred --cCCCHHHHHHHH----HhCCC
Q 012815 261 --ALASKEEMKAFC----EISPL 277 (456)
Q Consensus 261 --~~~s~eei~~i~----~~v~~ 277 (456)
|.-+++++.++. +++|.
T Consensus 159 t~G~~~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 159 TVGIMTPEDVAELVRALREALPD 181 (237)
T ss_dssp TTS-S-HHHHHHHHHHHHHHSTT
T ss_pred ccCCcCHHHHHHHHHHHHHhccC
Confidence 234455555444 45553
No 219
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.43 E-value=0.75 Score=47.63 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=80.3
Q ss_pred HHHHHHhC--CcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC-----CcEEEeCCCCCCCHHHHHHHHHH
Q 012815 102 AKLVEKSG--FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVS-----IPVIGDGDNGYGNAMNVKRTVKG 173 (456)
Q Consensus 102 Arl~e~aG--fdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~-----iPVIaD~DtGYG~~~nv~rtVk~ 173 (456)
++++++++ +|++-+- |.-.. -|..+ .-..+.+.+.+++|.+.++ +||++=+--++ ..+++.+.++.
T Consensus 160 ~~~~~~~~~~ad~lelN~scP~~---~g~~~--~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~-~~~~~~~ia~~ 233 (344)
T PRK05286 160 LICLEKLYPYADYFTVNISSPNT---PGLRD--LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL-SDEELDDIADL 233 (344)
T ss_pred HHHHHHHHhhCCEEEEEccCCCC---CCccc--ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC-CHHHHHHHHHH
Confidence 45566665 7877765 22211 13222 2234455566677777765 99999888553 34467888899
Q ss_pred HHHhCccEEEeCCCCCCC----------CccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHH
Q 012815 174 YIKAGFAGIILEDQVSPK----------GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESL 243 (456)
Q Consensus 174 l~~AGaaGI~IEDq~~pK----------~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI 243 (456)
++++||+||.+-...... ..|-..|.++.+.. .+.++.+ ++..+.++-|++=..-.. -
T Consensus 234 l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~--l~~v~~l---~~~~~~~ipIig~GGI~s-------~ 301 (344)
T PRK05286 234 ALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERS--TEVIRRL---YKELGGRLPIIGVGGIDS-------A 301 (344)
T ss_pred HHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHH--HHHHHHH---HHHhCCCCCEEEECCCCC-------H
Confidence 999999999997754210 12222333333332 2222222 222233566666544432 2
Q ss_pred HHHHHhHhcCCCEEEec
Q 012815 244 RRSRAFADAGADVLFID 260 (456)
Q Consensus 244 ~RakAy~eAGAD~Ifie 260 (456)
+.+..+..+|||+|.+-
T Consensus 302 eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 302 EDAYEKIRAGASLVQIY 318 (344)
T ss_pred HHHHHHHHcCCCHHHHH
Confidence 44666677999998764
No 220
>PRK12999 pyruvate carboxylase; Reviewed
Probab=93.42 E-value=3.1 Score=49.97 Aligned_cols=233 Identities=18% Similarity=0.202 Sum_probs=130.9
Q ss_pred HHHHHHh--CCcEEEecc-hHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCC--CCCC-HHHHHHH-HHHH
Q 012815 102 AKLVEKS--GFSFCFTSG-FSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-AMNVKRT-VKGY 174 (456)
Q Consensus 102 Arl~e~a--GfdAI~vSG-~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~Dt--GYG~-~~nv~rt-Vk~l 174 (456)
|..++++ |+..+=++| ..+. +.+.+ .. -+--|.+..++.....+.+-.+.=+-+ ||-+ +.++.+. +++.
T Consensus 561 a~~l~~~~~g~~siE~~ggatfd-~~~r~--l~-e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a 636 (1146)
T PRK12999 561 APATARLLPNLFSLEMWGGATFD-VAYRF--LK-EDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREA 636 (1146)
T ss_pred HHHHHHHhCCCCEEEeeCCcchh-hhccc--cC-CCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHHHHH
Confidence 5567788 999988874 3332 12222 22 223345555555444444555555555 5665 5666665 9999
Q ss_pred HHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC-CeEEEEec----chh-hcccHHHHHHHHHH
Q 012815 175 IKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS-DIVIVART----DSR-QALSLEESLRRSRA 248 (456)
Q Consensus 175 ~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~-dfvIiART----DA~-~~~~ldeAI~RakA 248 (456)
.+.|++-++|=|... + ++.++.+.++.++.|. -.+-+.=| |+. ..+.++--++-++.
T Consensus 637 ~~~Gid~~rifd~ln-------------d----~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~ 699 (1146)
T PRK12999 637 AAAGIDVFRIFDSLN-------------W----VENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKE 699 (1146)
T ss_pred HHcCCCEEEEeccCC-------------h----HHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHH
Confidence 999999999988631 1 2334444444443332 12334445 443 23678888999999
Q ss_pred hHhcCCCEEEec---cCCCHHHHHHHHH----hCCCCceeeeeeccCCCCCCCC---HHHHHhcCCCEEeccchHH--HH
Q 012815 249 FADAGADVLFID---ALASKEEMKAFCE----ISPLVPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GV 316 (456)
Q Consensus 249 y~eAGAD~Ifie---~~~s~eei~~i~~----~v~~vP~~~N~~~~~g~tp~lt---~~eL~elGv~~Vs~p~~ll--~a 316 (456)
+.++|||.|.+- |+-+++++.++.+ +++ +|+ .+ +.+ .+..+. .-.-.++|++.|-.....+ ++
T Consensus 700 l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~-ipi--~~-H~H-nt~Gla~an~laA~~aGad~vD~av~glg~~t 774 (1146)
T PRK12999 700 LEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVD-LPI--HL-HTH-DTSGNGLATYLAAAEAGVDIVDVAVASMSGLT 774 (1146)
T ss_pred HHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcC-CeE--EE-EeC-CCCchHHHHHHHHHHhCCCEEEecchhhcCCc
Confidence 999999999885 3445555555554 443 443 22 221 122333 3455689999987766544 34
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHcccccc
Q 012815 317 SVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSM 365 (456)
Q Consensus 317 a~~A~~~~l~~i~~g~~~~~~~~~~~~e~~~lvg~~~~~~~e~~y~~~~ 365 (456)
...+++..+..|+..+.. ....++.+.++-.+ |.+..+.|...+
T Consensus 775 gn~~le~vv~~L~~~~~~---t~idl~~l~~~s~~--~~~~r~~y~~~~ 818 (1146)
T PRK12999 775 SQPSLNSIVAALEGTERD---TGLDLDAIRKLSPY--WEAVRPYYAPFE 818 (1146)
T ss_pred CCHHHHHHHHHHHhcCCC---CCcCHHHHHHHHHH--HHHHHhHhhccC
Confidence 555666776667643222 12334444333222 344455554443
No 221
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=93.42 E-value=1.6 Score=43.79 Aligned_cols=154 Identities=23% Similarity=0.259 Sum_probs=93.0
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
|+.+|+.|||++.+.-++-+- . ++|.+..+..-|...+++|.+.+++||=+.. --|. ......-....||+=
T Consensus 40 A~~leegG~DavivEN~gD~P-f--~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNV---LrNd--~vaA~~IA~a~gA~F 111 (263)
T COG0434 40 AAALEEGGVDAVIVENYGDAP-F--LKDVGPETVAAMAVIVREVVREVSIPVGVNV---LRND--AVAALAIAYAVGADF 111 (263)
T ss_pred HHHHHhCCCcEEEEeccCCCC-C--CCCCChHHHHHHHHHHHHHHHhccccceeee---eccc--cHHHHHHHHhcCCCE
Confidence 567889999999999766432 1 3577778888898999999999999973321 0111 111111122346654
Q ss_pred EE--------eCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh-----cccHHHHHHHHHH
Q 012815 182 II--------LEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-----ALSLEESLRRSRA 248 (456)
Q Consensus 182 I~--------IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~-----~~~ldeAI~RakA 248 (456)
|. +-|| |-..|+. .| ..|. +..++.+..|.|-.+.-. ..+++++++.+
T Consensus 112 IRVN~~tg~~~tdq------Giieg~A----~e-~~r~------r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dt-- 172 (263)
T COG0434 112 IRVNVLTGAYATDQ------GIIEGNA----AE-LARY------RARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDT-- 172 (263)
T ss_pred EEEEeeeceEeccc------ceecchH----HH-HHHH------HHhccCCcEEEeecchhcccccCCcCHHHHHHHH--
Confidence 44 3344 2222211 11 1222 222455777777655532 23566665543
Q ss_pred hHhcCCCEEEecc-----CCCHHHHHHHHHhCCCCceeee
Q 012815 249 FADAGADVLFIDA-----LASKEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 249 y~eAGAD~Ifie~-----~~s~eei~~i~~~v~~vP~~~N 283 (456)
.+..+||+|.+-| .++.++++...+..+ +|++++
T Consensus 173 ver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~-~pvlvG 211 (263)
T COG0434 173 VERGLADAVIVTGSRTGSPPDLEELKLAKEAVD-TPVLVG 211 (263)
T ss_pred HHccCCCEEEEecccCCCCCCHHHHHHHHhccC-CCEEEe
Confidence 2346689999987 368899999999888 788764
No 222
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=93.36 E-value=2.5 Score=40.38 Aligned_cols=139 Identities=19% Similarity=0.162 Sum_probs=78.7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecc
Q 012815 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTD 232 (456)
Q Consensus 153 VIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTD 232 (456)
.+++.+.|..........+++..+.||+.|-+==....-++|+ .++..+.|.+++++.. |..+.++-=+.
T Consensus 57 ~~~~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~--------~~~~~~ei~~v~~~~~--g~~lkvI~e~~ 126 (203)
T cd00959 57 TVIGFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGD--------YEAVYEEIAAVVEACG--GAPLKVILETG 126 (203)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCC--------HHHHHHHHHHHHHhcC--CCeEEEEEecC
Confidence 4466666664455666668899999999997633221111222 2557778888888765 44454443332
Q ss_pred hhhcccHHHHHHHHHHhHhcCCCEEEec-----cCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEE
Q 012815 233 SRQALSLEESLRRSRAFADAGADVLFID-----ALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (456)
Q Consensus 233 A~~~~~ldeAI~RakAy~eAGAD~Ifie-----~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~V 307 (456)
.. ..++...-++...|+|||.|=.. .-.+.+.++.+.+.+. .|+++-+ .+|-+ ..-...++-++|..|+
T Consensus 127 ~l---~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~-~~v~ik~-aGGik-t~~~~l~~~~~g~~ri 200 (203)
T cd00959 127 LL---TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG-GRVGVKA-AGGIR-TLEDALAMIEAGATRI 200 (203)
T ss_pred CC---CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC-CCceEEE-eCCCC-CHHHHHHHHHhChhhc
Confidence 22 23455555778889999998664 2245566666666554 2333222 23222 1122355666676654
No 223
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.25 E-value=0.53 Score=48.48 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=59.2
Q ss_pred HHHHHHHHhCC--CceeecccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE
Q 012815 78 AKSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (456)
Q Consensus 78 a~~Lr~ll~~~--~~lv~pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI 154 (456)
.+.++++.+.. -++++.++-+.-.|+.+.++|+|+|-++ |-+...........+ .+.-..+..+...++..++|||
T Consensus 123 ~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g-~p~~~~i~~v~~~~~~~~vpVI 201 (325)
T cd00381 123 IEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVG-VPQATAVADVAAAARDYGVPVI 201 (325)
T ss_pred HHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCC-CCHHHHHHHHHHHHhhcCCcEE
Confidence 34455555433 2455679999999999999999999885 111111111111222 2222344445555666689999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
+| .|..+..++. +..++||++|.+
T Consensus 202 A~--GGI~~~~di~----kAla~GA~~Vmi 225 (325)
T cd00381 202 AD--GGIRTSGDIV----KALAAGADAVML 225 (325)
T ss_pred ec--CCCCCHHHHH----HHHHcCCCEEEe
Confidence 77 3444544444 334589999998
No 224
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.19 E-value=1.8 Score=44.61 Aligned_cols=142 Identities=18% Similarity=0.271 Sum_probs=91.8
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEe
Q 012815 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (456)
Q Consensus 151 iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiAR 230 (456)
+|+-+= .|+++++...+.++++.+.|...+||- +|.. +.++-+++|++++++ .|+++.|.
T Consensus 131 v~~y~s--~~~~~~~~~~~~a~~~~~~Gf~~~KiK-------vg~~------~~~~d~~~v~air~~---~g~~~~l~-- 190 (355)
T cd03321 131 VQAYDS--HGLDGAKLATERAVTAAEEGFHAVKTK-------IGYP------TADEDLAVVRSIRQA---VGDGVGLM-- 190 (355)
T ss_pred eeEEEe--CCCChHHHHHHHHHHHHHhhhHHHhhh-------cCCC------ChHhHHHHHHHHHHh---hCCCCEEE--
Confidence 555432 356666777778888888899999882 3321 224446778877766 36676664
Q ss_pred cchhhcccHHHHHHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhc----C
Q 012815 231 TDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL----G 303 (456)
Q Consensus 231 TDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~el----G 303 (456)
.|+......++|++.++++.+.+ ..|+|-+ .+.+.++++.+..+ +|+.+. .. ..+..++.++ +
T Consensus 191 vDaN~~~~~~~A~~~~~~l~~~~--i~~iEeP~~~~d~~~~~~l~~~~~-ipia~~-----E~--~~~~~~~~~~i~~~~ 260 (355)
T cd03321 191 VDYNQSLTVPEAIERGQALDQEG--LTWIEEPTLQHDYEGHARIASALR-TPVQMG-----EN--WLGPEEMFKALSAGA 260 (355)
T ss_pred EeCCCCcCHHHHHHHHHHHHcCC--CCEEECCCCCcCHHHHHHHHHhcC-CCEEEc-----CC--CcCHHHHHHHHHhCC
Confidence 58887788999999999998875 5778764 35678889988876 676532 11 2355554433 4
Q ss_pred CCEEeccchHHHHHHHHHH
Q 012815 304 FKLVAYPLSLIGVSVRAMQ 322 (456)
Q Consensus 304 v~~Vs~p~~ll~aa~~A~~ 322 (456)
++.+..-+....-...+++
T Consensus 261 ~d~i~~~~~~~GGit~~~~ 279 (355)
T cd03321 261 CDLVMPDLMKIGGVTGWLR 279 (355)
T ss_pred CCeEecCHhhhCCHHHHHH
Confidence 6666655544433333333
No 225
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.19 E-value=1.8 Score=43.86 Aligned_cols=146 Identities=21% Similarity=0.208 Sum_probs=89.4
Q ss_pred HHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHH------HHHHHHHHHHhccC
Q 012815 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYG------EMVDQGQLITQAVS 150 (456)
Q Consensus 77 ~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~------Eml~~~r~I~ra~~ 150 (456)
..+++.+..+.....++.+=-..+..|.+++. |++++|.. . -.+|+.|.-++--+ ++...++++.+...
T Consensus 106 ~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~---Av~~GGg~-~-HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p 180 (273)
T PRK05848 106 LTSRYVEALESHKVKLLDTRKTRPLLRIFEKY---SVRNGGAS-N-HRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIP 180 (273)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCcchhHHHHH---HHHhCCCc-c-ccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCC
Confidence 45566666665555666676777778888875 77777643 2 47899887665433 23344555555443
Q ss_pred --CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE
Q 012815 151 --IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV 228 (456)
Q Consensus 151 --iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi 228 (456)
.+|.++.++ .++ +++..++|++.|.+ |.. ++++ |+.+++..+...+...|.
T Consensus 181 ~~~~I~VEv~t----lee----a~~A~~~GaDiI~L-Dn~--------------~~e~----l~~~v~~~~~~~~~~~ie 233 (273)
T PRK05848 181 FTAKIEIECES----LEE----AKNAMNAGADIVMC-DNM--------------SVEE----IKEVVAYRNANYPHVLLE 233 (273)
T ss_pred CCceEEEEeCC----HHH----HHHHHHcCCCEEEE-CCC--------------CHHH----HHHHHHHhhccCCCeEEE
Confidence 678898763 333 34566799999998 432 2333 333333222112333333
Q ss_pred EecchhhcccHHHHHHHHHHhHhcCCCEEEeccC
Q 012815 229 ARTDSRQALSLEESLRRSRAFADAGADVLFIDAL 262 (456)
Q Consensus 229 ARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~ 262 (456)
| .+ ++ ..+.+++|++.|+|.|.+-++
T Consensus 234 A----sG--gI--t~~ni~~ya~~GvD~IsvG~l 259 (273)
T PRK05848 234 A----SG--NI--TLENINAYAKSGVDAISSGSL 259 (273)
T ss_pred E----EC--CC--CHHHHHHHHHcCCCEEEeChh
Confidence 2 22 23 358899999999999998765
No 226
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.13 E-value=2.8 Score=43.12 Aligned_cols=81 Identities=22% Similarity=0.206 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHH-HHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012815 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYG-EMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~-Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG 178 (456)
--|+.++++|++++-+--.+. .+.++....... .+.+.++.|++.+++||++=.--++. ++.+.++.++++|
T Consensus 118 ~~a~~~~~agad~ielN~scp----p~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~---~~~~~a~~l~~~G 190 (334)
T PRK07565 118 DYARQIEQAGADALELNIYYL----PTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFS---NLANMAKRLDAAG 190 (334)
T ss_pred HHHHHHHHcCCCEEEEeCCCC----CCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCch---hHHHHHHHHHHcC
Confidence 445677888999988742110 122222112232 35577788888889999998643332 4667778889999
Q ss_pred ccEEEeCCC
Q 012815 179 FAGIILEDQ 187 (456)
Q Consensus 179 aaGI~IEDq 187 (456)
++||.+-..
T Consensus 191 ~dgI~~~n~ 199 (334)
T PRK07565 191 ADGLVLFNR 199 (334)
T ss_pred CCeEEEECC
Confidence 999988554
No 227
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=93.10 E-value=5.4 Score=41.41 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhCccEEEeCCCC--------CC---CCccCCCCccccCHHHHHHHH-HHHHHHhHhhCCCeEEEEecchh
Q 012815 167 VKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVSREEAVMRI-KAAVDARKESGSDIVIVARTDSR 234 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~--------~p---K~CGH~~gk~lvp~ee~v~kI-~AA~~Ar~~~G~dfvIiARTDA~ 234 (456)
..+.+++..++|++||.|--.- .| ||...-+|. +...-.++..| ++++++. ++.|.-|.-..
T Consensus 144 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGs-lenR~Rf~~eii~~ir~~~-----~~~v~vRis~~ 217 (337)
T PRK13523 144 FKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGS-PENRYRFLREIIDAVKEVW-----DGPLFVRISAS 217 (337)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCC-HHHHHHHHHHHHHHHHHhc-----CCCeEEEeccc
Confidence 3455677788999999986542 12 444433442 32222233222 2333321 45555565442
Q ss_pred ----hcccHHHHHHHHHHhHhcCCCEEEeccCC------------CHHHHHHHHHhCCCCceeee
Q 012815 235 ----QALSLEESLRRSRAFADAGADVLFIDALA------------SKEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 235 ----~~~~ldeAI~RakAy~eAGAD~Ifie~~~------------s~eei~~i~~~v~~vP~~~N 283 (456)
....++|+++-++.+.++|+|.|-+.+-. ..+..+++.+.++ +|++.+
T Consensus 218 d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~-ipVi~~ 281 (337)
T PRK13523 218 DYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHAN-IATGAV 281 (337)
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcC-CcEEEe
Confidence 12358999999999999999999775421 1244556666665 676654
No 228
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=93.10 E-value=0.95 Score=45.72 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=72.2
Q ss_pred HHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh-hcccHHHHHHHH
Q 012815 168 KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-QALSLEESLRRS 246 (456)
Q Consensus 168 ~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~-~~~~ldeAI~Ra 246 (456)
+..+|.+.++|++.|-+-|...--.-||.. .--++.++++---+|.+++. +..+|++----. -..+.+++++-|
T Consensus 25 ~~~A~~~d~agvd~lLVGDSlgmvv~G~~s-Tl~Vsl~~mi~ht~aV~Rga----~~~~vv~DmPF~sy~~s~~~a~~nA 99 (268)
T COG0413 25 YPFAKLFDQAGVDVLLVGDSLGMVVLGYDS-TLPVTLEDMIYHTKAVRRGA----PNAFVVADLPFGSYEVSPEQALKNA 99 (268)
T ss_pred cHHHhhhhhcCCcEEEEeccHHHHHcCCCC-cceecHHHHHHHHHHHHhcC----CCeeEEeCCCCcccCCCHHHHHHHH
Confidence 345577888999999999986433345532 34578899987777776665 355666532111 123678999998
Q ss_pred HHhHh-cCCCEEEeccCCC-HHHHHHHHHhCCCCceee
Q 012815 247 RAFAD-AGADVLFIDALAS-KEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 247 kAy~e-AGAD~Ifie~~~s-~eei~~i~~~v~~vP~~~ 282 (456)
..+.+ +|||+|.+|+-.. .+.+++++++ ++|++.
T Consensus 100 ~r~~ke~gA~aVKlEGG~~~~~~i~~L~~~--gIPV~g 135 (268)
T COG0413 100 ARLMKEAGADAVKLEGGEEMAETIKRLTER--GIPVMG 135 (268)
T ss_pred HHHHHHhCCCEEEEcCCHHHHHHHHHHHHc--CCceEE
Confidence 87776 9999999999532 3456666654 366653
No 229
>PRK06852 aldolase; Validated
Probab=93.08 E-value=8.2 Score=39.89 Aligned_cols=204 Identities=14% Similarity=0.028 Sum_probs=117.3
Q ss_pred ecccCChH-HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCC---CC----CH
Q 012815 93 GPACFDAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG---YG----NA 164 (456)
Q Consensus 93 ~pgayDal-SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtG---YG----~~ 164 (456)
++|.+|+- .-+.+.++|++++.+. .++.. ...++. .++|+|+-.+.+ +. ++
T Consensus 55 ~~gl~dp~~~i~~~~~~g~dav~~~-~G~l~--~~~~~~------------------~~~~lIlkl~~~t~l~~~~~~~p 113 (304)
T PRK06852 55 AKDDADPEHLFRIASKAKIGVFATQ-LGLIA--RYGMDY------------------PDVPYLVKLNSKTNLVKTSQRDP 113 (304)
T ss_pred CcccCCHHHHHHHHHhcCCCEEEeC-HHHHH--hhcccc------------------CCCcEEEEECCCCCcCCcccCCc
Confidence 45777876 5566677799999988 23221 112221 146677666654 22 22
Q ss_pred H-HHHHHHHHHHHhC------ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEE--EEecchhh
Q 012815 165 M-NVKRTVKGYIKAG------FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI--VARTDSRQ 235 (456)
Q Consensus 165 ~-nv~rtVk~l~~AG------aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvI--iARTDA~~ 235 (456)
. .+.-.|+..++.| |+||.+-=-. ++. ...++++.+..+++.+++.|-.+++ -.|-....
T Consensus 114 ~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~--------Gs~---~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~ 182 (304)
T PRK06852 114 LSRQLLDVEQVVEFKENSGLNILGVGYTIYL--------GSE---YESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVK 182 (304)
T ss_pred cccceecHHHHHhcCCccCCCceEEEEEEec--------CCH---HHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccC
Confidence 2 3455578888888 5555542111 110 2256888888888888888866654 24543321
Q ss_pred c-ccHHHHHHHHHHhHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCC-H---HHH-HhcCC
Q 012815 236 A-LSLEESLRRSRAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILN-P---LEL-EELGF 304 (456)
Q Consensus 236 ~-~~ldeAI~RakAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt-~---~eL-~elGv 304 (456)
. ...+-.---++.-+|.|||.|=+.-+ .+.+.++++++....+|++ +.+|.+..... + .+. ++.|.
T Consensus 183 ~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVv---iaGG~k~~~~e~L~~v~~ai~~aGa 259 (304)
T PRK06852 183 DEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVV---CAGGSSTDPEEFLKQLYEQIHISGA 259 (304)
T ss_pred CCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEE---EeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 1 12222233357778999999998776 5678899988876226654 24444432110 1 222 33788
Q ss_pred CEEeccchHHHHH-H--HHHHHHHHHHHcC
Q 012815 305 KLVAYPLSLIGVS-V--RAMQDALTAIKGG 331 (456)
Q Consensus 305 ~~Vs~p~~ll~aa-~--~A~~~~l~~i~~g 331 (456)
+-+++|--.+... - .+|-.++.+|-.+
T Consensus 260 ~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~ 289 (304)
T PRK06852 260 SGNATGRNIHQKPLDEAVRMCNAIYAITVE 289 (304)
T ss_pred ceeeechhhhcCCCchHHHHHHHHHHHHhC
Confidence 8888876655542 2 4455666666544
No 230
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.04 E-value=2 Score=45.35 Aligned_cols=139 Identities=21% Similarity=0.255 Sum_probs=70.5
Q ss_pred hHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012815 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (456)
Q Consensus 99 alSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG 178 (456)
.--+++++++|.++|.+.+-.... .++.+.. .+.++....+ ..++|||+ |+. ...+.++.++++|
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~~-~h~~~~~---~~~~i~~~ik----~~~ipVIa------G~V-~t~e~A~~l~~aG 208 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVSA-EHVSKEG---EPLNLKEFIY----ELDVPVIV------GGC-VTYTTALHLMRTG 208 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchhh-hccCCcC---CHHHHHHHHH----HCCCCEEE------eCC-CCHHHHHHHHHcC
Confidence 356778889999999997633221 2343332 2344433333 35899998 221 1134556677899
Q ss_pred ccEEEeCCCCCCCCccCCCCcc---ccCHHHHHHHHHHHHH-HhHhhC-CCeEEEEecchhhcccHHHHHHHHHHhHhcC
Q 012815 179 FAGIILEDQVSPKGCGHTRGRK---VVSREEAVMRIKAAVD-ARKESG-SDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (456)
Q Consensus 179 aaGI~IEDq~~pK~CGH~~gk~---lvp~ee~v~kI~AA~~-Ar~~~G-~dfvIiARTDA~~~~~ldeAI~RakAy~eAG 253 (456)
|++|.+- ..| .++|+.... -+|+-.++....++.+ -.++.+ .+.-|+|=---. ..-+-++|+ .+|
T Consensus 209 AD~V~VG--~G~-Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~------~~~diakAl-alG 278 (368)
T PRK08649 209 AAGVLVG--IGP-GAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIG------TSGDIAKAI-ACG 278 (368)
T ss_pred CCEEEEC--CCC-CcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCC------CHHHHHHHH-HcC
Confidence 9999883 322 224443222 2454333333222211 111121 234455532111 112224444 489
Q ss_pred CCEEEeccC
Q 012815 254 ADVLFIDAL 262 (456)
Q Consensus 254 AD~Ifie~~ 262 (456)
||+|++-..
T Consensus 279 Ad~Vm~Gs~ 287 (368)
T PRK08649 279 ADAVMLGSP 287 (368)
T ss_pred CCeecccch
Confidence 999998653
No 231
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=93.04 E-value=4.3 Score=42.55 Aligned_cols=132 Identities=23% Similarity=0.228 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHH
Q 012815 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (456)
Q Consensus 134 t~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~A 213 (456)
.+.++....+.+++..++++|++- . +....+.|++|||+..+. .|..++
T Consensus 185 ~~~~~a~~L~~l~~~~~~~lIIND-----~-------vdlAl~~~aDGVHLgq~d-------------l~~~~a------ 233 (347)
T PRK02615 185 QRLEEAKKLKELCHRYGALFIVND-----R-------VDIALAVDADGVHLGQED-------------LPLAVA------ 233 (347)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEeC-----h-------HHHHHHcCCCEEEeChhh-------------cCHHHH------
Confidence 344556667777888889999872 1 233445899999994331 122211
Q ss_pred HHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC-----------CCHHHHHHHHHhCCCCceee
Q 012815 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 214 A~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~-----------~s~eei~~i~~~v~~vP~~~ 282 (456)
+.-+|++ .+++++-. ..+| ++...+.|||.|++-.+ ...+.++.+++..+ +|+.+
T Consensus 234 ----R~llg~~-~iIG~S~H----s~~e----~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~-iPv~A 299 (347)
T PRK02615 234 ----RQLLGPE-KIIGRSTT----NPEE----MAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAP-IPWFA 299 (347)
T ss_pred ----HHhcCCC-CEEEEecC----CHHH----HHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCC-CCEEE
Confidence 2223544 45666543 2333 34445789999986321 23577888887665 56432
Q ss_pred eeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 283 NMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 283 N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
.||-++ -+..++.+.|+..|.....++.
T Consensus 300 ----iGGI~~-~ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 300 ----IGGIDK-SNIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred ----ECCCCH-HHHHHHHHcCCcEEEEeHHHhC
Confidence 245433 3568899999999988777664
No 232
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=92.90 E-value=1.1 Score=53.91 Aligned_cols=128 Identities=23% Similarity=0.324 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHhccCCcEEEeCCCC-------CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHH
Q 012815 134 SYGEMVDQGQLITQAVSIPVIGDGDNG-------YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSRE 205 (456)
Q Consensus 134 t~~Eml~~~r~I~ra~~iPVIaD~DtG-------YG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~e 205 (456)
..++|..+++.+.+.++.||++=...| |- ++....+.++++.+.|. ++|=++ .||-+.
T Consensus 253 GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G~--v~IIGG----CCGTtP-------- 318 (1229)
T PRK09490 253 GADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESGF--LNIVGG----CCGTTP-------- 318 (1229)
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC--CCEEEe----cCCCCH--------
Confidence 467899999999888889998755445 43 57788899999999774 455566 588653
Q ss_pred HHHHHHHHHHHHhH-----h--------------h--CCCeEEEE-ecchhh---------cccHHHHHHHHHHhHhcCC
Q 012815 206 EAVMRIKAAVDARK-----E--------------S--GSDIVIVA-RTDSRQ---------ALSLEESLRRSRAFADAGA 254 (456)
Q Consensus 206 e~v~kI~AA~~Ar~-----~--------------~--G~dfvIiA-RTDA~~---------~~~ldeAI~RakAy~eAGA 254 (456)
++++.|+.+++... . . +..|++|+ |+...+ ..++++++++|+...++||
T Consensus 319 eHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA 398 (1229)
T PRK09490 319 EHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQQVENGA 398 (1229)
T ss_pred HHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccchhccHHHHHHHHcCCHHHHHHHHHHHHHCCC
Confidence 56667666654210 0 0 12477777 776642 3578999999999999999
Q ss_pred CEEEecc----CCCHHHHHHHHHhC
Q 012815 255 DVLFIDA----LASKEEMKAFCEIS 275 (456)
Q Consensus 255 D~Ifie~----~~s~eei~~i~~~v 275 (456)
|+|=|-. +...++++++...+
T Consensus 399 ~iIDVn~g~~~id~~eem~rvv~~i 423 (1229)
T PRK09490 399 QIIDINMDEGMLDSEAAMVRFLNLI 423 (1229)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHH
Confidence 9996632 34567888887543
No 233
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=92.88 E-value=0.65 Score=48.53 Aligned_cols=100 Identities=14% Similarity=0.045 Sum_probs=62.3
Q ss_pred HHHHHHHhC-CCceeecc-cCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEE
Q 012815 79 KSLRQILEL-PGVHQGPA-CFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (456)
Q Consensus 79 ~~Lr~ll~~-~~~lv~pg-ayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIa 155 (456)
+.++.+.+. +++.++-| +-++-.|+.+.++|+|+|.+| |-+-... --.-|.-.++.-+.+..+...++..++|||+
T Consensus 139 ~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSict-tR~~~Gvg~pqltAv~~~a~aa~~~~v~VIa 217 (343)
T TIGR01305 139 EFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCT-TRTKTGVGYPQLSAVIECADAAHGLKGHIIS 217 (343)
T ss_pred HHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCccc-CceeCCCCcCHHHHHHHHHHHhccCCCeEEE
Confidence 334443332 34555555 999999999999999999999 4332211 1123333344445555566666667899999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012815 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (456)
Q Consensus 156 D~DtGYG~~~nv~rtVk~l~~AGaaGI~IE 185 (456)
|.---|++ ++. |.+ .+||++|.|-
T Consensus 218 DGGIr~~g--DI~---KAL-A~GAd~VMlG 241 (343)
T TIGR01305 218 DGGCTCPG--DVA---KAF-GAGADFVMLG 241 (343)
T ss_pred cCCcCchh--HHH---HHH-HcCCCEEEEC
Confidence 95444432 333 333 4899999994
No 234
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=92.78 E-value=0.52 Score=51.57 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=60.2
Q ss_pred HHHHHHHhC-C-CceeecccCChHHHHHHHHhCCcEEEec-chHHhhhh-----cccCCCCCCCHHHHHHHHHHHHhccC
Q 012815 79 KSLRQILEL-P-GVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAAR-----LALPDTGFISYGEMVDQGQLITQAVS 150 (456)
Q Consensus 79 ~~Lr~ll~~-~-~~lv~pgayDalSArl~e~aGfdAI~vS-G~avSas~-----lG~PD~~~lt~~Eml~~~r~I~ra~~ 150 (456)
..++++.+. + ..+++-|+-+.--|+.+.++|+|+|.+| |.+..... .|+|- ..-+..+..+++..+
T Consensus 278 ~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~------~~~i~~~~~~~~~~~ 351 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQ------ATAVYKVASIAAQHG 351 (505)
T ss_pred HHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCc------ccHHHHHHHHHHhcC
Confidence 445555543 2 3445568999999999999999999987 22211111 13332 223445667777788
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012815 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (456)
Q Consensus 151 iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IE 185 (456)
+|||+|. |+.++.++. +...+||++|.+=
T Consensus 352 vpVIadG--GI~~~~di~----kAla~GA~~V~vG 380 (505)
T PLN02274 352 VPVIADG--GISNSGHIV----KALTLGASTVMMG 380 (505)
T ss_pred CeEEEeC--CCCCHHHHH----HHHHcCCCEEEEc
Confidence 9999984 344443443 4455899999983
No 235
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.75 E-value=4.5 Score=41.07 Aligned_cols=204 Identities=14% Similarity=0.107 Sum_probs=111.6
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
|+.+.++|++.|=++++... .-.|.... -.|. ++.|.+..+..+.+=.. + .+-+++..++|+..
T Consensus 32 a~~L~~~Gv~~IEvgsf~~p---~~~p~~~d--~~e~---~~~l~~~~~~~~~~l~~----~----~~~ie~A~~~g~~~ 95 (287)
T PRK05692 32 IDRLSAAGLSYIEVASFVSP---KWVPQMAD--AAEV---MAGIQRRPGVTYAALTP----N----LKGLEAALAAGADE 95 (287)
T ss_pred HHHHHHcCCCEEEeCCCcCc---cccccccc--HHHH---HHhhhccCCCeEEEEec----C----HHHHHHHHHcCCCE
Confidence 45567789999998854411 01333221 1333 34443322222211011 2 33446667889999
Q ss_pred EEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE-ecch-----hhcccHHHHHHHHHHhHhcCCC
Q 012815 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA-RTDS-----RQALSLEESLRRSRAFADAGAD 255 (456)
Q Consensus 182 I~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA-RTDA-----~~~~~ldeAI~RakAy~eAGAD 255 (456)
|+|-....+ .|...+-=.+.+|.+++++.+++.+++.| +.+.+ =+.+ ......+..++-++.+.++|||
T Consensus 96 v~i~~~~s~---~~~~~n~~~~~~e~l~~~~~~v~~ak~~g--~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d 170 (287)
T PRK05692 96 VAVFASASE---AFSQKNINCSIAESLERFEPVAEAAKQAG--VRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCY 170 (287)
T ss_pred EEEEEecCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 999876532 13221222467888999998888877655 33321 1111 1123567888999999999999
Q ss_pred EEEecc---CCCHHHHHHHHH----hCCCCceeeeeeccCCCCCCCCH---HHHHhcCCCEEeccchHH--------HHH
Q 012815 256 VLFIDA---LASKEEMKAFCE----ISPLVPKMANMLEGGGKTPILNP---LELEELGFKLVAYPLSLI--------GVS 317 (456)
Q Consensus 256 ~Ifie~---~~s~eei~~i~~----~v~~vP~~~N~~~~~g~tp~lt~---~eL~elGv~~Vs~p~~ll--------~aa 317 (456)
.|.+.- .-.+.++.++.+ +++.+| +.+ +.+. +..+.. -.--+.|++.+-.....+ ++.
T Consensus 171 ~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~--i~~-H~Hn-~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~aG 246 (287)
T PRK05692 171 EISLGDTIGVGTPGQVRAVLEAVLAEFPAER--LAG-HFHD-TYGQALANIYASLEEGITVFDASVGGLGGCPYAPGASG 246 (287)
T ss_pred EEEeccccCccCHHHHHHHHHHHHHhCCCCe--EEE-EecC-CCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCccc
Confidence 998853 345556655554 444333 322 2211 222322 334567888876655544 344
Q ss_pred HHHHHHHHHHHHc
Q 012815 318 VRAMQDALTAIKG 330 (456)
Q Consensus 318 ~~A~~~~l~~i~~ 330 (456)
-.++++.+..|..
T Consensus 247 N~~~E~lv~~L~~ 259 (287)
T PRK05692 247 NVATEDVLYMLHG 259 (287)
T ss_pred cccHHHHHHHHHh
Confidence 5556666655643
No 236
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.74 E-value=0.52 Score=51.25 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=61.9
Q ss_pred HHHHHHHHhC-CCceeec-ccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE
Q 012815 78 AKSLRQILEL-PGVHQGP-ACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (456)
Q Consensus 78 a~~Lr~ll~~-~~~lv~p-gayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI 154 (456)
.+.++++.+. ++..++. |+-++-.|+.+.++|+|+|-++ |-+-.++..++-..+ ++.=+.+..+...++..++|||
T Consensus 256 ~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~-~p~~~av~~~~~~~~~~~~~vi 334 (479)
T PRK07807 256 LEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAAARELGAHVW 334 (479)
T ss_pred HHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCc-hhHHHHHHHHHHHHHhcCCcEE
Confidence 3445554443 3445555 9999999999999999999966 332222234554433 2333445555555666789999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
+|. |..++.++. | ...+||+++.+
T Consensus 335 a~g--gi~~~~~~~---~-al~~ga~~v~~ 358 (479)
T PRK07807 335 ADG--GVRHPRDVA---L-ALAAGASNVMI 358 (479)
T ss_pred ecC--CCCCHHHHH---H-HHHcCCCeeec
Confidence 983 333443333 3 44489999988
No 237
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=92.70 E-value=1.7 Score=44.73 Aligned_cols=117 Identities=18% Similarity=0.257 Sum_probs=79.0
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE
Q 012815 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (456)
Q Consensus 150 ~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA 229 (456)
.+|+.+=. .++.+++...+.++++.+.|..++||-= |+.....-.+.++-+++|++++++. |+++.|
T Consensus 108 ~i~~y~~~-~~~~~~~~~~~~a~~~~~~Gf~~~Kikv-------g~~~~~~~~~~~~d~~~v~avr~~~---g~~~~l-- 174 (341)
T cd03327 108 KIPAYASG-LYPTDLDELPDEAKEYLKEGYRGMKMRF-------GYGPSDGHAGLRKNVELVRAIREAV---GYDVDL-- 174 (341)
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEECC-------CCCCCcchHHHHHHHHHHHHHHHHh---CCCCcE--
Confidence 36665411 1234667777888888899999999942 2100000113456688888887664 666665
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCCCCceee
Q 012815 230 RTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 230 RTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~ 282 (456)
+-|+......++|++.++++.+.+ ..|+|-+ .+.+.++++.+..+ +|+..
T Consensus 175 ~vDan~~~~~~~A~~~~~~l~~~~--~~~iEeP~~~~d~~~~~~l~~~~~-~pIa~ 227 (341)
T cd03327 175 MLDCYMSWNLNYAIKMARALEKYE--LRWIEEPLIPDDIEGYAELKKATG-IPIST 227 (341)
T ss_pred EEECCCCCCHHHHHHHHHHhhhcC--CccccCCCCccCHHHHHHHHhcCC-CCeEe
Confidence 468877788999999999999874 5688874 35678888888866 67653
No 238
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=92.70 E-value=9.8 Score=42.67 Aligned_cols=274 Identities=20% Similarity=0.233 Sum_probs=147.6
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcE--EEeCC--CCCCC-HHH-HHHHHHH
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPV--IGDGD--NGYGN-AMN-VKRTVKG 173 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPV--IaD~D--tGYG~-~~n-v~rtVk~ 173 (456)
-|..+.++||+.+=+.|.+.- --++|-.+.-+ -|.+ +.+++.. +.|+ +.-.- -||.. +.+ +..-++.
T Consensus 32 ia~~ld~~G~~siE~~GGatf--~~~~~~~~e~p-~e~l---r~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~ 105 (593)
T PRK14040 32 IAAKLDKVGYWSLESWGGATF--DACIRFLGEDP-WERL---RELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVER 105 (593)
T ss_pred HHHHHHHcCCCEEEecCCcch--hhhccccCCCH-HHHH---HHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHH
Confidence 466778899999987542221 11344444333 3333 4444333 4554 33332 25665 555 5667888
Q ss_pred HHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCe-EEEEecchhhcccHHHHHHHHHHhHhc
Q 012815 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVARTDSRQALSLEESLRRSRAFADA 252 (456)
Q Consensus 174 l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~df-vIiARTDA~~~~~ldeAI~RakAy~eA 252 (456)
..+.|++.++|-|... +. +.++.+.+..++.|... ..+.=|++ ..+.++.-++-++.+.++
T Consensus 106 a~~~Gid~~rifd~ln-------------d~----~~~~~ai~~ak~~G~~~~~~i~yt~~-p~~~~~~~~~~a~~l~~~ 167 (593)
T PRK14040 106 AVKNGMDVFRVFDAMN-------------DP----RNLETALKAVRKVGAHAQGTLSYTTS-PVHTLQTWVDLAKQLEDM 167 (593)
T ss_pred HHhcCCCEEEEeeeCC-------------cH----HHHHHHHHHHHHcCCeEEEEEEEeeC-CccCHHHHHHHHHHHHHc
Confidence 8999999999998631 12 34444444444444221 11223332 134577778889999999
Q ss_pred CCCEEEec---cCCCHHHHHHHHHhCCC-CceeeeeeccCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHHHHHH
Q 012815 253 GADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVRAMQD 323 (456)
Q Consensus 253 GAD~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~lt---~~eL~elGv~~Vs~p~~ll--~aa~~A~~~ 323 (456)
|||.|.+- |+-.++++.++.+.+.. +.+++.+ +.+ .+..+. .-.--++|++.|-.....+ ++...+++.
T Consensus 168 Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~-H~H-nt~GlA~An~laAieAGa~~vD~ai~glG~~~Gn~~le~ 245 (593)
T PRK14040 168 GVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHL-HCH-ATTGLSTATLLKAIEAGIDGVDTAISSMSMTYGHSATET 245 (593)
T ss_pred CCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEE-EEC-CCCchHHHHHHHHHHcCCCEEEeccccccccccchhHHH
Confidence 99999885 34455666666654311 1223332 221 122333 2345578998886544432 445556666
Q ss_pred HHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHcccccccCccccCCCCCCCCCcceeeEEEEEEecCCCceeeccc
Q 012815 324 ALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENGGSRDAFSGIWSRTLRVKITGRDGFEKLDVR 403 (456)
Q Consensus 324 ~l~~i~~g~~~~~~~~~~~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (456)
.+..|+..+... ...++.+.++-.| |.+..++|...+..+.. + . .+.|+= -
T Consensus 246 vv~~L~~~~~~~---gidl~~l~~is~~--~~~v~~~Y~~~~~~~~~-------~-~---~~v~~~-------------e 296 (593)
T PRK14040 246 LVATLEGTERDT---GLDILKLEEIAAY--FREVRKKYAKFEGQLKG-------V-D---SRILVA-------------Q 296 (593)
T ss_pred HHHHHHhcCCCc---CCCHHHHHHHHHH--HHHHHHHhccCCccccc-------C-c---ccEEEE-------------c
Confidence 666665432221 1333444333222 45566777664433321 0 0 133332 3
Q ss_pred cCcccchhhhhhccccccccHHHHhhhhh
Q 012815 404 IPAGFLDGITNVVPALGGVNLKELLNDAA 432 (456)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (456)
||-|- +||++.++.-.++.++++..-
T Consensus 297 ~PGG~---~Snl~~ql~~~g~~~~~~evl 322 (593)
T PRK14040 297 VPGGM---LTNMESQLKEQGAADKLDEVL 322 (593)
T ss_pred CCCch---HHHHHHHHHHCCCHHHHHHHH
Confidence 55553 578888888888877776653
No 239
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=92.70 E-value=3.6 Score=42.23 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=55.8
Q ss_pred HHHHHHHHhCCcEEEecc---hHHhhh----hcccCCCCCCCHH----HHHHHHHHHHhcc--CCcEEEeCC------CC
Q 012815 100 LSAKLVEKSGFSFCFTSG---FSISAA----RLALPDTGFISYG----EMVDQGQLITQAV--SIPVIGDGD------NG 160 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG---~avSas----~lG~PD~~~lt~~----Eml~~~r~I~ra~--~iPVIaD~D------tG 160 (456)
-.|+.+.++|||+|-+-+ +-++-. ..-.-|.---+++ .+++.+++|.+++ +.||.+|+- .|
T Consensus 158 ~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g 237 (336)
T cd02932 158 AAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGG 237 (336)
T ss_pred HHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCC
Confidence 567888889999998862 211110 1112231112343 3456677777777 689999854 44
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCC
Q 012815 161 YGNAMNVKRTVKGYIKAGFAGIILED 186 (456)
Q Consensus 161 YG~~~nv~rtVk~l~~AGaaGI~IED 186 (456)
+ +...+.+.++.++++|++-|++--
T Consensus 238 ~-~~~e~~~ia~~Le~~gvd~iev~~ 262 (336)
T cd02932 238 W-DLEDSVELAKALKELGVDLIDVSS 262 (336)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEECC
Confidence 4 466788888999999999998743
No 240
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=92.59 E-value=2.5 Score=48.28 Aligned_cols=141 Identities=14% Similarity=0.093 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhCccEEEeCCCC--------C---CCCccCCCCccccCHHHHH-HHHHHHHHHhHhhCCCeEEEEecchh
Q 012815 167 VKRTVKGYIKAGFAGIILEDQV--------S---PKGCGHTRGRKVVSREEAV-MRIKAAVDARKESGSDIVIVARTDSR 234 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~--------~---pK~CGH~~gk~lvp~ee~v-~kI~AA~~Ar~~~G~dfvIiARTDA~ 234 (456)
..+++++..++|++||.|--.- . .||...-+| .+-..-.+. +-|++++++ .|+||.|-.|.-+.
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~---~~~~~~v~~ri~~~ 628 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGG-SLENRLRYPLEVFRAVRAV---WPAEKPMSVRISAH 628 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHhHHHHHHHHHHHHh---cCCCCeeEEEEccc
Confidence 4456677788999999996541 1 244432233 221111122 222222222 36788888886652
Q ss_pred ----hcccHHHHHHHHHHhHhcCCCEEEeccC-C------------CHHHHHHHHHhCCCCceeeeeeccCCC-CCCCCH
Q 012815 235 ----QALSLEESLRRSRAFADAGADVLFIDAL-A------------SKEEMKAFCEISPLVPKMANMLEGGGK-TPILNP 296 (456)
Q Consensus 235 ----~~~~ldeAI~RakAy~eAGAD~Ifie~~-~------------s~eei~~i~~~v~~vP~~~N~~~~~g~-tp~lt~ 296 (456)
....++|+++-++.+.++|+|.|=|.+- . ..+..+++.+.+. +|+++| ++- +|..-.
T Consensus 629 ~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pv~~~----G~i~~~~~a~ 703 (765)
T PRK08255 629 DWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAG-IATIAV----GAISEADHVN 703 (765)
T ss_pred cccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcC-CEEEEe----CCCCCHHHHH
Confidence 2345899999999999999999988631 1 1234455666665 676654 221 121112
Q ss_pred HHHHhcCCCEEeccchHHHH
Q 012815 297 LELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 297 ~eL~elGv~~Vs~p~~ll~a 316 (456)
+-|++-++..|.++-.++.-
T Consensus 704 ~~l~~g~~D~v~~gR~~l~d 723 (765)
T PRK08255 704 SIIAAGRADLCALARPHLAD 723 (765)
T ss_pred HHHHcCCcceeeEcHHHHhC
Confidence 23445558888887665543
No 241
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.58 E-value=0.68 Score=50.30 Aligned_cols=105 Identities=13% Similarity=0.188 Sum_probs=65.5
Q ss_pred cccHHHHHHHHHhC-CCc-eeecccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC
Q 012815 74 CLSPAKSLRQILEL-PGV-HQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVS 150 (456)
Q Consensus 74 a~~~a~~Lr~ll~~-~~~-lv~pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~ 150 (456)
+......++++++. ++. +++=|+-+.-.|+.+.++|+++|-++ |.+......++-+.+.-+++-.++.++.... .+
T Consensus 250 ~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~-~~ 328 (475)
T TIGR01303 250 QVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARK-LG 328 (475)
T ss_pred cHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHH-cC
Confidence 33334456665554 234 44444999999999999999999988 3332223345655554455555555444443 48
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012815 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (456)
Q Consensus 151 iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IE 185 (456)
+|||+|. |+-++.++. |. +.+||++|.+-
T Consensus 329 ~~viadG--gi~~~~di~---ka-la~GA~~vm~g 357 (475)
T TIGR01303 329 GHVWADG--GVRHPRDVA---LA-LAAGASNVMVG 357 (475)
T ss_pred CcEEEeC--CCCCHHHHH---HH-HHcCCCEEeec
Confidence 9999983 344454444 33 34899999883
No 242
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=92.57 E-value=4 Score=41.06 Aligned_cols=110 Identities=14% Similarity=0.256 Sum_probs=73.2
Q ss_pred cCCcEEEeCCCCCCCH-HHHHHHHHHHH-HhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeE
Q 012815 149 VSIPVIGDGDNGYGNA-MNVKRTVKGYI-KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIV 226 (456)
Q Consensus 149 ~~iPVIaD~DtGYG~~-~nv~rtVk~l~-~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfv 226 (456)
.+.||++|+=.| +. ..+...++.+. ..|++++.+--- +| .+.+++++++.++.+..++
T Consensus 85 ~g~~VilD~K~~--DIpnTv~~~a~a~~~~~g~D~vTvh~~-----~G-------------~d~l~~~~~~~~~~~~~v~ 144 (261)
T TIGR02127 85 LGLPVLADVKRG--DIGSTASAYAKAWLGHLHADALTVSPY-----LG-------------LDSLRPFLEYARANGAGIF 144 (261)
T ss_pred CCCeEEEEeecc--ChHHHHHHHHHHHHhhcCCCEEEECCc-----CC-------------HHHHHHHHHHHhhcCCEEE
Confidence 478999998876 54 34555666666 689999888432 12 2244555555444455788
Q ss_pred EEEecch-hh----c-------ccHHHHHHHHHHhHhc----CCCEEEeccCCCHHHHHHHHHhCCCCc
Q 012815 227 IVARTDS-RQ----A-------LSLEESLRRSRAFADA----GADVLFIDALASKEEMKAFCEISPLVP 279 (456)
Q Consensus 227 IiARTDA-~~----~-------~~ldeAI~RakAy~eA----GAD~Ifie~~~s~eei~~i~~~v~~vP 279 (456)
|.++|-. .. . .-.+..+++++.+.++ |.|.+++.+. +.+|++++.+..+..|
T Consensus 145 VlvlTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~gAT-~p~e~~~iR~~~~~~~ 212 (261)
T TIGR02127 145 VLVKTSNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVVGAT-SPGDLLRLRIEMPTAP 212 (261)
T ss_pred EEEeCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEECCC-CHHHHHHHHHhCCCCe
Confidence 8898865 11 1 1145677788888776 8999999774 4678999988766443
No 243
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=92.55 E-value=2 Score=43.18 Aligned_cols=130 Identities=12% Similarity=0.035 Sum_probs=83.6
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecch----hhcccHHHHHHH
Q 012815 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS----RQALSLEESLRR 245 (456)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA----~~~~~ldeAI~R 245 (456)
.+....++||+=|-|=+.. ..+| ++|.-..++. ++++. ..+..++-|--. +....++.-.+.
T Consensus 13 ~a~~A~~~GAdRiELc~~L------~~GG--lTPS~g~i~~---~~~~~---~ipv~vMIRPR~gdF~Ys~~E~~~M~~d 78 (248)
T PRK11572 13 CALTAQQAGADRIELCAAP------KEGG--LTPSLGVLKS---VRERV---TIPVHPIIRPRGGDFCYSDGEFAAMLED 78 (248)
T ss_pred HHHHHHHcCCCEEEEccCc------CCCC--cCCCHHHHHH---HHHhc---CCCeEEEEecCCCCCCCCHHHHHHHHHH
Confidence 3456677899998885543 1122 5666444444 44432 356777777653 223457778888
Q ss_pred HHHhHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchH
Q 012815 246 SRAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (456)
Q Consensus 246 akAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~l 313 (456)
.+.+.++|||.+++-.+ -+.+.++++.+...+.|+.+..--.--.-|.-..++|.++||.+|......
T Consensus 79 i~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~ 151 (248)
T PRK11572 79 IATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQ 151 (248)
T ss_pred HHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCC
Confidence 99999999999998554 467788888887665666554321111112223688999999999985543
No 244
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=92.50 E-value=13 Score=37.45 Aligned_cols=176 Identities=17% Similarity=0.186 Sum_probs=96.8
Q ss_pred cccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEe-----CCCCCCCH--H
Q 012815 94 PACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD-----GDNGYGNA--M 165 (456)
Q Consensus 94 pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD-----~DtGYG~~--~ 165 (456)
.++.+.-+|..+++.|.+-|=+- .+. -.|+.|--.++.. +.+.+++||.+= .|+=|.+. .
T Consensus 6 vcv~s~~~a~~A~~~GAdRiELc~~L~---------~GGlTPS~g~i~~---~~~~~~ipv~vMIRPR~gdF~Ys~~E~~ 73 (248)
T PRK11572 6 ICCYSMECALTAQQAGADRIELCAAPK---------EGGLTPSLGVLKS---VRERVTIPVHPIIRPRGGDFCYSDGEFA 73 (248)
T ss_pred EEECCHHHHHHHHHcCCCEEEEccCcC---------CCCcCCCHHHHHH---HHHhcCCCeEEEEecCCCCCCCCHHHHH
Confidence 47889999999999999988544 322 2222222233333 334567887652 24447653 3
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEe-cchhhcccHHHHHH
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR-TDSRQALSLEESLR 244 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiAR-TDA~~~~~ldeAI~ 244 (456)
...+.++.+.++|++||.+==-. .-| -++.+-+ ++ .++++..+ + +..=| -|.. .+..+|++
T Consensus 74 ~M~~di~~~~~~GadGvV~G~L~---~dg------~vD~~~~-~~---Li~~a~~~--~-vTFHRAfD~~--~d~~~al~ 135 (248)
T PRK11572 74 AMLEDIATVRELGFPGLVTGVLD---VDG------HVDMPRM-RK---IMAAAGPL--A-VTFHRAFDMC--ANPLNALK 135 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeeEC---CCC------CcCHHHH-HH---HHHHhcCC--c-eEEechhhcc--CCHHHHHH
Confidence 56688999999999999882110 011 2444422 33 33333211 1 22333 2221 23345555
Q ss_pred HHHHhHhcCCCEEEeccCC-----CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEE
Q 012815 245 RSRAFADAGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (456)
Q Consensus 245 RakAy~eAGAD~Ifie~~~-----s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~V 307 (456)
.. .+.|.|-|+-.|-. ..+.++++.+...+ .. ++.++|-++ -...+|.+.|++-+
T Consensus 136 ~l---~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~---~~-Im~GgGV~~-~Nv~~l~~tG~~~~ 195 (248)
T PRK11572 136 QL---ADLGVARILTSGQQQDAEQGLSLIMELIAASDG---PI-IMAGAGVRL-SNLHKFLDAGVREV 195 (248)
T ss_pred HH---HHcCCCEEECCCCCCCHHHHHHHHHHHHHhcCC---CE-EEeCCCCCH-HHHHHHHHcCCCEE
Confidence 44 45599999977632 24566666665442 22 566655432 23466667777654
No 245
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.49 E-value=3.4 Score=42.68 Aligned_cols=117 Identities=19% Similarity=0.226 Sum_probs=77.5
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEe
Q 012815 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (456)
Q Consensus 151 iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiAR 230 (456)
+|+-+= .|.++++.+.+.++++.+.|...+||-=+.. -+..++. -+.++-+++|++++++. |+++.| |
T Consensus 113 i~~~~~--~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~---~~~~~~~--~~~~~D~~~i~avr~~~---g~~~~l--~ 180 (352)
T cd03325 113 VRVYSW--IGGDRPSDVAEAARARREAGFTAVKMNATEE---LQWIDTS--KKVDAAVERVAALREAV---GPDIDI--G 180 (352)
T ss_pred eEEEEe--CCCCCHHHHHHHHHHHHHcCCCEEEecCCCC---cccCCCH--HHHHHHHHHHHHHHHhh---CCCCEE--E
Confidence 565532 1334667777788888889999999932100 0000000 12344577888777654 566665 6
Q ss_pred cchhhcccHHHHHHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCCCCceee
Q 012815 231 TDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 231 TDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~ 282 (456)
.|+....++++|++.++++.+.| ..|+|-+ .+.+.++++++..+ +|+..
T Consensus 181 vDaN~~~~~~~A~~~~~~l~~~~--i~~iEeP~~~~d~~~~~~L~~~~~-~pia~ 232 (352)
T cd03325 181 VDFHGRVSKPMAKDLAKELEPYR--LLFIEEPVLPENVEALAEIAARTT-IPIAT 232 (352)
T ss_pred EECCCCCCHHHHHHHHHhccccC--CcEEECCCCccCHHHHHHHHHhCC-CCEEe
Confidence 78888788999999999998764 7788864 35678888888876 67654
No 246
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=92.49 E-value=1.2 Score=42.68 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=59.0
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCC
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~D 158 (456)
+-+++..+.+...+++++.+.--+..++++|++.+-++..+.. .....+....++.++++.+.+++||++.
T Consensus 113 ~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t-------~~~~~~~~~~~~~l~~i~~~~~ipvia~-- 183 (219)
T cd04729 113 ELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYT-------EETAKTEDPDFELLKELRKALGIPVIAE-- 183 (219)
T ss_pred HHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCcccc-------ccccCCCCCCHHHHHHHHHhcCCCEEEe--
Confidence 3344444444477788999999999999999998855422221 1110111112356677777778999985
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 159 NGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 159 tGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
.|..++.+ ++++.++||+|+.+
T Consensus 184 GGI~~~~~----~~~~l~~GadgV~v 205 (219)
T cd04729 184 GRINSPEQ----AAKALELGADAVVV 205 (219)
T ss_pred CCCCCHHH----HHHHHHCCCCEEEE
Confidence 35555544 45667789999988
No 247
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=92.44 E-value=0.96 Score=46.15 Aligned_cols=148 Identities=18% Similarity=0.138 Sum_probs=80.4
Q ss_pred eeecccCChHHH----HHHHHhCCcEEEec-c--hHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCC
Q 012815 91 HQGPACFDALSA----KLVEKSGFSFCFTS-G--FSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN 163 (456)
Q Consensus 91 lv~pgayDalSA----rl~e~aGfdAI~vS-G--~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~ 163 (456)
++=.+..|+-.. ++++..|++.|=+= | ...+ ...|+=..-+-..+.+.+.++++.+++++||.+-+-.|+.+
T Consensus 57 ~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v-~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~ 135 (309)
T PF01207_consen 57 IVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKV-TKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDD 135 (309)
T ss_dssp EEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHH-HHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT-
T ss_pred eEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHH-hcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccccc
Confidence 344455666543 34444577776553 2 1111 12343333345677788888999999999999999999984
Q ss_pred -HHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 164 -AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 164 -~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
.+++.+.++.+.++|+++|.|-.-+. +-.+.+ -.. -+.+.+| +++. .+-|++--|-... ++
T Consensus 136 ~~~~~~~~~~~l~~~G~~~i~vH~Rt~--~q~~~~---~a~-w~~i~~i---~~~~-----~ipvi~NGdI~s~---~d- 197 (309)
T PF01207_consen 136 SPEETIEFARILEDAGVSAITVHGRTR--KQRYKG---PAD-WEAIAEI---KEAL-----PIPVIANGDIFSP---ED- 197 (309)
T ss_dssp -CHHHHHHHHHHHHTT--EEEEECS-T--TCCCTS-------HHHHHHC---HHC------TSEEEEESS--SH---HH-
T ss_pred chhHHHHHHHHhhhcccceEEEecCch--hhcCCc---ccc-hHHHHHH---hhcc-----cceeEEcCccCCH---HH-
Confidence 57899999999999999999977642 112211 112 2333443 3322 3566666666542 33
Q ss_pred HHHHHHhHh-cCCCEEEec
Q 012815 243 LRRSRAFAD-AGADVLFID 260 (456)
Q Consensus 243 I~RakAy~e-AGAD~Ifie 260 (456)
++.+.+ .|||.|++-
T Consensus 198 ---~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 198 ---AERMLEQTGADGVMIG 213 (309)
T ss_dssp ---HHHHCCCH-SSEEEES
T ss_pred ---HHHHHHhcCCcEEEEc
Confidence 333333 499999983
No 248
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=92.36 E-value=4.9 Score=41.68 Aligned_cols=124 Identities=17% Similarity=0.212 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHhccCCcEEEeCC-----CCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHH
Q 012815 133 ISYGEMVDQGQLITQAVSIPVIGDGD-----NGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEA 207 (456)
Q Consensus 133 lt~~Eml~~~r~I~ra~~iPVIaD~D-----tGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~ 207 (456)
+|+-+++-.. + -.+|+.+=.. .|+.+++...+.++++.+.|..+++|- .|.. . ..++-
T Consensus 113 ~Pl~~LLGg~----~-~~v~~y~s~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik-------~~~~--~---~~~~d 175 (368)
T cd03329 113 LPVHRLLGGY----R-EKIPAYASTMVGDDLEGLESPEAYADFAEECKALGYRAIKLH-------PWGP--G---VVRRD 175 (368)
T ss_pred CcHHHHhhcc----c-cceeEEEecCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEe-------cCCc--h---hHHHH
Confidence 6777776331 1 1355543211 133467778888888999999999992 1110 0 12445
Q ss_pred HHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCCCCcee
Q 012815 208 VMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKM 281 (456)
Q Consensus 208 v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~ 281 (456)
+++|++++++. |+++.|. -|+.....+++|++.++++++.+ ..|+|-+ .+.+.++++.+..+ +|+.
T Consensus 176 i~~i~~vR~~~---G~~~~l~--vDan~~~~~~~A~~~~~~l~~~~--l~~iEeP~~~~d~~~~~~l~~~~~-ipIa 244 (368)
T cd03329 176 LKACLAVREAV---GPDMRLM--HDGAHWYSRADALRLGRALEELG--FFWYEDPLREASISSYRWLAEKLD-IPIL 244 (368)
T ss_pred HHHHHHHHHHh---CCCCeEE--EECCCCcCHHHHHHHHHHhhhcC--CCeEeCCCCchhHHHHHHHHhcCC-CCEE
Confidence 77888777654 6677664 37777778999999999998874 5688764 34567778877766 6754
No 249
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=92.34 E-value=1.4 Score=41.59 Aligned_cols=146 Identities=20% Similarity=0.236 Sum_probs=84.7
Q ss_pred HHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHH------HHHHHHHHhccC
Q 012815 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEM------VDQGQLITQAVS 150 (456)
Q Consensus 77 ~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Em------l~~~r~I~ra~~ 150 (456)
.+..+.+..+.....++-+=-+....|.+++. |++++|... -.+|+.|..++.=+.+ ...++++.+..+
T Consensus 4 ~t~~~v~~a~~~~~~i~~TRKt~Pg~r~l~~~---Av~~GGg~~--hR~gl~d~ili~~nHi~~~g~i~~av~~~~~~~~ 78 (169)
T PF01729_consen 4 ATRRMVDAAKGTKIRIADTRKTIPGLRPLEKY---AVLAGGGDN--HRLGLSDMILIKDNHIAFFGGIEEAVKAARQAAP 78 (169)
T ss_dssp HHHHHHHHTTTSSSEEEEGSGS-TTTHHHHHH---HHHHTTSBH--HHSSTTSSEEE-HHHHHHHSSHHHHHHHHHHHST
T ss_pred HHHHHHHHhCCCCEEEeecCCCCcccCHHHHH---HHHhcCcee--EECCCCCcEEehHHHHHHhCCHHHHHHHHHHhCC
Confidence 34567776766655556565666667777765 677776442 3789999887754432 223444444442
Q ss_pred -C-cEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE
Q 012815 151 -I-PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV 228 (456)
Q Consensus 151 -i-PVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi 228 (456)
. +|.++.++ . +.+++..++|++.|.++-- +++ .++.+++..+..++...|.
T Consensus 79 ~~~~I~VEv~~----~----ee~~ea~~~g~d~I~lD~~---------------~~~----~~~~~v~~l~~~~~~v~ie 131 (169)
T PF01729_consen 79 EKKKIEVEVEN----L----EEAEEALEAGADIIMLDNM---------------SPE----DLKEAVEELRELNPRVKIE 131 (169)
T ss_dssp TTSEEEEEESS----H----HHHHHHHHTT-SEEEEES----------------CHH----HHHHHHHHHHHHTTTSEEE
T ss_pred CCceEEEEcCC----H----HHHHHHHHhCCCEEEecCc---------------CHH----HHHHHHHHHhhcCCcEEEE
Confidence 4 49999876 2 3345677799999999442 223 2333333333334554443
Q ss_pred EecchhhcccHHHHHHHHHHhHhcCCCEEEeccC
Q 012815 229 ARTDSRQALSLEESLRRSRAFADAGADVLFIDAL 262 (456)
Q Consensus 229 ARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~ 262 (456)
+-- ++ .+++...|++.|+|.|.+-++
T Consensus 132 ~SG------GI--~~~ni~~ya~~gvD~isvg~~ 157 (169)
T PF01729_consen 132 ASG------GI--TLENIAEYAKTGVDVISVGSL 157 (169)
T ss_dssp EES------SS--STTTHHHHHHTT-SEEEECHH
T ss_pred EEC------CC--CHHHHHHHHhcCCCEEEcChh
Confidence 321 11 136788999999999988653
No 250
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=92.27 E-value=4.8 Score=41.79 Aligned_cols=170 Identities=18% Similarity=0.208 Sum_probs=101.4
Q ss_pred eecccCChHHHHHH------HHhCCcEEEecchHHhhhhcccCC-C-CCCCHH---HHHHHHHHHHhcc-CCcEEEeC--
Q 012815 92 QGPACFDALSAKLV------EKSGFSFCFTSGFSISAARLALPD-T-GFISYG---EMVDQGQLITQAV-SIPVIGDG-- 157 (456)
Q Consensus 92 v~pgayDalSArl~------e~aGfdAI~vSG~avSas~lG~PD-~-~~lt~~---Eml~~~r~I~ra~-~iPVIaD~-- 157 (456)
.|||.|=..--+++ .+.|.+++.+=|..- .-.-| . +.-.++ =+...++.|.+.. ++-||+|.
T Consensus 41 smPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~----~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvcl 116 (320)
T cd04824 41 SLPGINRYGVNRLEEFLRPLVAKGLRSVILFGVPL----KPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCL 116 (320)
T ss_pred CCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCCCc----cccCCcCccccccCCCChHHHHHHHHHHhCCCcEEEEeeec
Confidence 56776644333333 345888887644310 00011 1 211222 2345677777766 57788884
Q ss_pred ----CCCC-------C---CHHHHH---HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHh
Q 012815 158 ----DNGY-------G---NAMNVK---RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (456)
Q Consensus 158 ----DtGY-------G---~~~nv~---rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~ 220 (456)
++|+ | |...+. +.+-.+.+|||+-|-=-|- ++| ||.|++++-++
T Consensus 117 c~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdM--------MDG-----------rV~aIR~aLD~ 177 (320)
T cd04824 117 CEYTSHGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVAPSDM--------MDG-----------RVRAIKQALIQ 177 (320)
T ss_pred cCCCCCCcceeECCCCcCcCHHHHHHHHHHHHHHHHhCCCEEecccc--------ccc-----------HHHHHHHHHHH
Confidence 2231 1 333333 4444566899987755443 333 55555555554
Q ss_pred hCC--CeEEEEecchhhc--------------------------ccHHHHHHHHHHhHhcCCCEEEe-ccCCCHHHHHHH
Q 012815 221 SGS--DIVIVARTDSRQA--------------------------LSLEESLRRSRAFADAGADVLFI-DALASKEEMKAF 271 (456)
Q Consensus 221 ~G~--dfvIiARTDA~~~--------------------------~~ldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i 271 (456)
.|- +.-|..-+--++. ..-.||++.+..=.+-|||+|+| |+++-.+.++++
T Consensus 178 ~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~ 257 (320)
T cd04824 178 AGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKPGTPYLDIVREA 257 (320)
T ss_pred CCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHH
Confidence 342 5667766533210 12678999999999999999999 789999999999
Q ss_pred HHhCCCCceeeee
Q 012815 272 CEISPLVPKMANM 284 (456)
Q Consensus 272 ~~~v~~vP~~~N~ 284 (456)
.+.+|.+|+.+=.
T Consensus 258 k~~~~~~PvaaYq 270 (320)
T cd04824 258 KDKHPDLPLAVYH 270 (320)
T ss_pred HHhccCCCEEEEE
Confidence 9999668876433
No 251
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.20 E-value=1.3 Score=42.55 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=61.4
Q ss_pred HHHHHHHhC-CCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeC
Q 012815 79 KSLRQILEL-PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (456)
Q Consensus 79 ~~Lr~ll~~-~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~ 157 (456)
..+.+..++ .+..+++++++.--++.++++|++.+.++..+.. +.+. ......+..++++.+.+++||++.
T Consensus 108 ~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t----~~~~---~~~~~~~~~i~~i~~~~~iPvia~- 179 (221)
T PRK01130 108 AELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYT----EETK---KPEEPDFALLKELLKAVGCPVIAE- 179 (221)
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceee----cCCC---CCCCcCHHHHHHHHHhCCCCEEEE-
Confidence 344444555 5677788899988899999999999876532321 1111 111112456677777778999984
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012815 158 DNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (456)
Q Consensus 158 DtGYG~~~nv~rtVk~l~~AGaaGI~IE 185 (456)
.|..++.++ +++.++||+||.+=
T Consensus 180 -GGI~t~~~~----~~~l~~GadgV~iG 202 (221)
T PRK01130 180 -GRINTPEQA----KKALELGAHAVVVG 202 (221)
T ss_pred -CCCCCHHHH----HHHHHCCCCEEEEc
Confidence 455565444 45667899999884
No 252
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=92.18 E-value=1.8 Score=51.91 Aligned_cols=128 Identities=22% Similarity=0.341 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHhccCCcEEEeCCCC-------CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHH
Q 012815 134 SYGEMVDQGQLITQAVSIPVIGDGDNG-------YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSRE 205 (456)
Q Consensus 134 t~~Eml~~~r~I~ra~~iPVIaD~DtG-------YG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~e 205 (456)
..++|..+++.+.+.++.||++=...| |- ++....+.++++.+.| |++|=++ .||-++
T Consensus 237 gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~g--gv~IIGG----CCGTtP-------- 302 (1178)
T TIGR02082 237 GPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAEG--GLNIVGG----CCGTTP-------- 302 (1178)
T ss_pred CHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhC--CCcEEEe----cCCCCH--------
Confidence 467899999999998899999844444 33 4677888888888752 3455566 588653
Q ss_pred HHHHHHHHHHHHh---H------------------hhCCCeEEEE-ecchhh---------cccHHHHHHHHHHhHhcCC
Q 012815 206 EAVMRIKAAVDAR---K------------------ESGSDIVIVA-RTDSRQ---------ALSLEESLRRSRAFADAGA 254 (456)
Q Consensus 206 e~v~kI~AA~~Ar---~------------------~~G~dfvIiA-RTDA~~---------~~~ldeAI~RakAy~eAGA 254 (456)
++++.|+.+++.. . ..+..|++|+ |+...+ ..+.++++++|+...++||
T Consensus 303 eHI~ala~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~qve~GA 382 (1178)
T TIGR02082 303 DHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQQVENGA 382 (1178)
T ss_pred HHHHHHHHHhhcCCCCCCCCcccceeecCceEEeecCCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHHHHHCCC
Confidence 5666666665421 0 0113477887 777642 3578999999999999999
Q ss_pred CEEEecc----CCCHHHHHHHHHhC
Q 012815 255 DVLFIDA----LASKEEMKAFCEIS 275 (456)
Q Consensus 255 D~Ifie~----~~s~eei~~i~~~v 275 (456)
|+|=|-+ +...++++++...+
T Consensus 383 ~iIDVn~~~~~vd~~eem~rvv~~i 407 (1178)
T TIGR02082 383 QILDINVDYGMLDGVAAMKRFLNLL 407 (1178)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHH
Confidence 9987643 34567888887543
No 253
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=92.12 E-value=4.5 Score=43.01 Aligned_cols=120 Identities=10% Similarity=0.163 Sum_probs=74.7
Q ss_pred cccCCCCCC---CHHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCC--
Q 012815 125 LALPDTGFI---SYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRG-- 198 (456)
Q Consensus 125 lG~PD~~~l---t~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~g-- 198 (456)
.|++-.+++ +++.+++..+++.+.. ++|||+-+=.++ ++....+.+++++++||+++-|-=. |-|..+
T Consensus 84 iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~-s~~~~~~~a~~~e~~GaD~iELNiS-----CPn~~~~r 157 (385)
T PLN02495 84 IGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEY-NKDAWEEIIERVEETGVDALEINFS-----CPHGMPER 157 (385)
T ss_pred ccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCC-CHHHHHHHHHHHHhcCCCEEEEECC-----CCCCCCcC
Confidence 477666544 5889999988887666 689999975544 4677888889999999999987543 545321
Q ss_pred ---cc-ccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEe
Q 012815 199 ---RK-VVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (456)
Q Consensus 199 ---k~-lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifi 259 (456)
-. ...+ +.+.+|-.++..... .+ |+.+--. .+++...-+++..++|||.|.+
T Consensus 158 ~~g~~~gq~~-e~~~~i~~~Vk~~~~--iP--v~vKLsP----n~t~i~~ia~aa~~~Gadgi~l 213 (385)
T PLN02495 158 KMGAAVGQDC-DLLEEVCGWINAKAT--VP--VWAKMTP----NITDITQPARVALKSGCEGVAA 213 (385)
T ss_pred ccchhhccCH-HHHHHHHHHHHHhhc--Cc--eEEEeCC----ChhhHHHHHHHHHHhCCCEEEE
Confidence 11 1233 444454333332211 23 3333211 2334456678888999998865
No 254
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=92.08 E-value=0.77 Score=46.77 Aligned_cols=65 Identities=25% Similarity=0.385 Sum_probs=45.8
Q ss_pred HHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhC--CCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccch
Q 012815 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEIS--PLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v--~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ 312 (456)
++.+..+++||||.|+++-.+ +|++++.++.+ .+ ...+-. .||-+ .-+..++++.||..+|.+.-
T Consensus 198 le~~~eAl~agaDiImLDNm~-~e~~~~av~~l~~~~-~~~lEa--SGgIt-~~ni~~yA~tGVD~IS~gal 264 (280)
T COG0157 198 LEEAEEALEAGADIIMLDNMS-PEELKEAVKLLGLAG-RALLEA--SGGIT-LENIREYAETGVDVISVGAL 264 (280)
T ss_pred HHHHHHHHHcCCCEEEecCCC-HHHHHHHHHHhccCC-ceEEEE--eCCCC-HHHHHHHhhcCCCEEEeCcc
Confidence 455677788999999999875 47999998874 32 222222 23333 24678999999999998753
No 255
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=92.08 E-value=5.6 Score=41.40 Aligned_cols=169 Identities=22% Similarity=0.247 Sum_probs=96.8
Q ss_pred eecccCChHHHHH------HHHhCCcEEEecchHHhhhhcccCC-CCCCCH--H-HHHHHHHHHHhcc-CCcEEEeC---
Q 012815 92 QGPACFDALSAKL------VEKSGFSFCFTSGFSISAARLALPD-TGFISY--G-EMVDQGQLITQAV-SIPVIGDG--- 157 (456)
Q Consensus 92 v~pgayDalSArl------~e~aGfdAI~vSG~avSas~lG~PD-~~~lt~--~-Eml~~~r~I~ra~-~iPVIaD~--- 157 (456)
.|||.|=..--.+ +.+.|.+++.+=|.--. -.-| .+.-.+ + =+...++.|.+.+ ++-||+|.
T Consensus 47 smPg~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~----~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc 122 (324)
T PF00490_consen 47 SMPGVYRYSIDSLVKEVEEAVDLGIRAVILFGVIDP----SKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLC 122 (324)
T ss_dssp TSTTEEEEEHHHHHHHHHHHHHTT--EEEEEEE-SC----SC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-ST
T ss_pred CCCCeeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCc----ccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecccc
Confidence 4666654332232 34569998887443100 0111 111111 1 2455667777776 58888884
Q ss_pred ---C----------CCCC-CHHH---HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHh
Q 012815 158 ---D----------NGYG-NAMN---VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (456)
Q Consensus 158 ---D----------tGYG-~~~n---v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~ 220 (456)
+ +|+= |... ..+.+-.+.+|||+-|-=-|- ++| ||.|++++-++
T Consensus 123 ~YT~hGHcGil~~~~g~idND~Tl~~Lak~Al~~A~AGADiVAPSdM--------MDG-----------rV~aIR~aLd~ 183 (324)
T PF00490_consen 123 EYTSHGHCGILDDEDGEIDNDETLERLAKQALSHAEAGADIVAPSDM--------MDG-----------RVGAIREALDE 183 (324)
T ss_dssp TTBTSSSSSEB-CTTSSBEHHHHHHHHHHHHHHHHHHT-SEEEE-S----------TT-----------HHHHHHHHHHH
T ss_pred cccCCCceEEEECCCCeEecHHHHHHHHHHHHHHHHhCCCeeccccc--------cCC-----------HHHHHHHHHHh
Confidence 2 2322 2223 344445666899988876553 343 55555555554
Q ss_pred hC-CCeEEEEecchhhc--------------------------ccHHHHHHHHHHhHhcCCCEEEe-ccCCCHHHHHHHH
Q 012815 221 SG-SDIVIVARTDSRQA--------------------------LSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFC 272 (456)
Q Consensus 221 ~G-~dfvIiARTDA~~~--------------------------~~ldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i~ 272 (456)
.| .+.-|..-+--++. ..-+||++.+..=.+-|||+|+| |+++..+.++++.
T Consensus 184 ~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k 263 (324)
T PF00490_consen 184 AGFSDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEEGADILMVKPALPYLDIIRRVK 263 (324)
T ss_dssp TTCTTSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEEEEESSGGGHHHHHHHH
T ss_pred CCCCCccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhhCCCEEEeecchhHHHHHHHHH
Confidence 44 36778876543220 12789999999999999999999 7899999999999
Q ss_pred HhCCCCceeeee
Q 012815 273 EISPLVPKMANM 284 (456)
Q Consensus 273 ~~v~~vP~~~N~ 284 (456)
+.+. +|+.+=.
T Consensus 264 ~~~~-~P~~aYq 274 (324)
T PF00490_consen 264 ERFD-LPVAAYQ 274 (324)
T ss_dssp HHCT-S-EEEEE
T ss_pred HhcC-CCEEEEE
Confidence 9986 7876433
No 256
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.06 E-value=5.1 Score=41.60 Aligned_cols=145 Identities=15% Similarity=0.185 Sum_probs=80.5
Q ss_pred HHHHHHhCCcEEEec---chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012815 102 AKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (456)
Q Consensus 102 Arl~e~aGfdAI~vS---G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG 178 (456)
++.+.++|++.|=++ +++-+...+|.|- .+-.|++..++.... +..+.+=+..|+++. +-+++..+.|
T Consensus 31 ~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~---~~~~e~i~~~~~~~~--~~~~~~ll~pg~~~~----~dl~~a~~~g 101 (337)
T PRK08195 31 ARALDAAGVPVIEVTHGDGLGGSSFNYGFGA---HTDEEYIEAAAEVVK--QAKIAALLLPGIGTV----DDLKMAYDAG 101 (337)
T ss_pred HHHHHHcCCCEEEeecCCCCCCccccCCCCC---CCHHHHHHHHHHhCC--CCEEEEEeccCcccH----HHHHHHHHcC
Confidence 455778999999886 3322211225443 334555555543332 233433234677764 3467788899
Q ss_pred ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEE
Q 012815 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (456)
Q Consensus 179 aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~If 258 (456)
++.|.|-.. |.. .+...+-|+.+ ++.|-...++ =.++ .....++.++-++...++|||+|+
T Consensus 102 vd~iri~~~-----~~e--------~~~~~~~i~~a----k~~G~~v~~~-l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~ 162 (337)
T PRK08195 102 VRVVRVATH-----CTE--------ADVSEQHIGLA----RELGMDTVGF-LMMS-HMAPPEKLAEQAKLMESYGAQCVY 162 (337)
T ss_pred CCEEEEEEe-----cch--------HHHHHHHHHHH----HHCCCeEEEE-EEec-cCCCHHHHHHHHHHHHhCCCCEEE
Confidence 999998653 221 12222223322 3334332222 2233 234567888999999999999998
Q ss_pred ecc---CCCHHHHHHHHHh
Q 012815 259 IDA---LASKEEMKAFCEI 274 (456)
Q Consensus 259 ie~---~~s~eei~~i~~~ 274 (456)
+-- .-.++++.++.+.
T Consensus 163 i~DT~G~~~P~~v~~~v~~ 181 (337)
T PRK08195 163 VVDSAGALLPEDVRDRVRA 181 (337)
T ss_pred eCCCCCCCCHHHHHHHHHH
Confidence 742 3455666655543
No 257
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=92.00 E-value=3.1 Score=43.73 Aligned_cols=132 Identities=23% Similarity=0.318 Sum_probs=76.8
Q ss_pred CCcEEE-eCCCCCCCHHHHHHHHHHHHHhCccEE-EeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHH----hHhhCC
Q 012815 150 SIPVIG-DGDNGYGNAMNVKRTVKGYIKAGFAGI-ILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA----RKESGS 223 (456)
Q Consensus 150 ~iPVIa-D~DtGYG~~~nv~rtVk~l~~AGaaGI-~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~A----r~~~G~ 223 (456)
++||+. -||+= .+. +++..|.+.|.-|| |-+ .+.|+.++.++..+.. ..+...
T Consensus 37 ~iPivsa~MDtV-te~----~mAiama~~Gglgvih~~----------------~~~e~q~~~v~~vK~~~~~a~~d~~~ 95 (352)
T PF00478_consen 37 KIPIVSAPMDTV-TES----EMAIAMARLGGLGVIHRN----------------MSIEEQAEEVKKVKRYYPNASKDEKG 95 (352)
T ss_dssp SSSEEE-SSTTT-SSH----HHHHHHHHTTSEEEEESS----------------SCHHHHHHHHHHHHTHHTTHHBHTTS
T ss_pred cCceEecCcccc-chH----HHHHHHHHhcCCceecCC----------------CCHHHHHHHHhhhccccccccccccc
Confidence 699875 44443 232 34445666665555 332 2345555555555432 222223
Q ss_pred CeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC--CC---HHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHH
Q 012815 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL--AS---KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE 298 (456)
Q Consensus 224 dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~--~s---~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~e 298 (456)
.+++-|-.-.. ++.++|++++.+||+|+|+|+.- .+ .+.++++.+.+|.+|+++-=+. |+ -..++
T Consensus 96 ~l~V~aavg~~-----~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~----T~-e~a~~ 165 (352)
T PF00478_consen 96 RLLVAAAVGTR-----DDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVV----TY-EGAKD 165 (352)
T ss_dssp CBCEEEEEESS-----TCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-----SH-HHHHH
T ss_pred cceEEEEecCC-----HHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccC----CH-HHHHH
Confidence 45555543322 34589999999999999999753 23 3567777788887776542111 11 23688
Q ss_pred HHhcCCCEEeccch
Q 012815 299 LEELGFKLVAYPLS 312 (456)
Q Consensus 299 L~elGv~~Vs~p~~ 312 (456)
|.+.|+.-|-.|..
T Consensus 166 L~~aGad~vkVGiG 179 (352)
T PF00478_consen 166 LIDAGADAVKVGIG 179 (352)
T ss_dssp HHHTT-SEEEESSS
T ss_pred HHHcCCCEEEEecc
Confidence 99999999988744
No 258
>PRK08227 autoinducer 2 aldolase; Validated
Probab=91.97 E-value=3.6 Score=41.59 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=98.1
Q ss_pred CCcEEEeCCCC--CC-CH--HHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCC
Q 012815 150 SIPVIGDGDNG--YG-NA--MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD 224 (456)
Q Consensus 150 ~iPVIaD~DtG--YG-~~--~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~d 224 (456)
++|+|+-.+.+ +. ++ ..+.-.|++.++.||+||.+-=-. ++ + ...++++.+..+++.+++.|-+
T Consensus 74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~--------Gs-~--~E~~~l~~l~~v~~ea~~~G~P 142 (264)
T PRK08227 74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFI--------GS-E--YEHQSIKNIIQLVDAGLRYGMP 142 (264)
T ss_pred CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEec--------CC-H--HHHHHHHHHHHHHHHHHHhCCc
Confidence 46778777765 22 22 346666889999999998773221 11 1 2256788888888888887766
Q ss_pred eEEE-EecchhhcccHHHHHHH-HHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCC----HHH
Q 012815 225 IVIV-ARTDSRQALSLEESLRR-SRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILN----PLE 298 (456)
Q Consensus 225 fvIi-ARTDA~~~~~ldeAI~R-akAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt----~~e 298 (456)
++++ .|.... ..+.+ .|.- ++.-+|.|||.|=+.-+. +.++++++..| +|++ +.+|.+++... ..+
T Consensus 143 lla~~prG~~~-~~~~~-~ia~aaRiaaELGADiVK~~y~~--~~f~~vv~a~~-vPVv---iaGG~k~~~~~~L~~v~~ 214 (264)
T PRK08227 143 VMAVTAVGKDM-VRDAR-YFSLATRIAAEMGAQIIKTYYVE--EGFERITAGCP-VPIV---IAGGKKLPERDALEMCYQ 214 (264)
T ss_pred EEEEecCCCCc-CchHH-HHHHHHHHHHHHcCCEEecCCCH--HHHHHHHHcCC-CcEE---EeCCCCCCHHHHHHHHHH
Confidence 5553 222211 12333 3443 566679999999887643 68888888765 5654 34444432110 133
Q ss_pred HHhcCCCEEeccchHHHH-HHHHHHHHHHHHHcC
Q 012815 299 LEELGFKLVAYPLSLIGV-SVRAMQDALTAIKGG 331 (456)
Q Consensus 299 L~elGv~~Vs~p~~ll~a-a~~A~~~~l~~i~~g 331 (456)
.-+.|.+-|.+|--.+.. --.+|-.++.+|-.+
T Consensus 215 ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~ 248 (264)
T PRK08227 215 AIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHE 248 (264)
T ss_pred HHHcCCceeeechhhhccCCHHHHHHHHHHHHhC
Confidence 345788888887554443 344555666666554
No 259
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=91.83 E-value=17 Score=38.30 Aligned_cols=156 Identities=13% Similarity=0.017 Sum_probs=96.3
Q ss_pred HHHHHHHhCCC--ceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHh---ccCCcE
Q 012815 79 KSLRQILELPG--VHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPV 153 (456)
Q Consensus 79 ~~Lr~ll~~~~--~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~r---a~~iPV 153 (456)
+.++.+.+.+. .+.+++-...--...+.++|++.+.+.- .+|-.. ....-..|.+|.++.+....+ ..+..|
T Consensus 56 e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~-~~Sd~h--~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v 132 (378)
T PRK11858 56 EAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFI-ATSDIH--IKHKLKKTREEVLERMVEAVEYAKDHGLYV 132 (378)
T ss_pred HHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEE-cCCHHH--HHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 45666655332 2444443334445666678999877762 111000 111123678888887665543 346888
Q ss_pred EEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecc
Q 012815 154 IGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTD 232 (456)
Q Consensus 154 IaD~DtGYG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTD 232 (456)
.+.+++++- ++..+.+.++.+.++|+..|.|-|.. |. ..++++.+.+++.++.. +.++-+=...
T Consensus 133 ~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~-----G~------~~P~~v~~lv~~l~~~~---~~~l~~H~Hn- 197 (378)
T PRK11858 133 SFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTV-----GI------LDPFTMYELVKELVEAV---DIPIEVHCHN- 197 (378)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-----CC------CCHHHHHHHHHHHHHhc---CCeEEEEecC-
Confidence 889887754 67889999999999999999999985 33 34566777776666443 2222222222
Q ss_pred hhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 233 SRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 233 A~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
++--|+.-+.+..+|||+.|
T Consensus 198 -----d~GlA~AN~laAv~aGa~~v 217 (378)
T PRK11858 198 -----DFGMATANALAGIEAGAKQV 217 (378)
T ss_pred -----CcCHHHHHHHHHHHcCCCEE
Confidence 23345667777789999976
No 260
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.82 E-value=5.3 Score=40.34 Aligned_cols=132 Identities=21% Similarity=0.284 Sum_probs=85.7
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE
Q 012815 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (456)
Q Consensus 150 ~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA 229 (456)
.+|+.+-. +.++++.+.+.++++.+.|..+++|- +|. +.++.+++|++++++. | ++-|
T Consensus 123 ~~~~~~~~--~~~~~~~~~~~~~~~~~~Gf~~iKik-------~g~-------~~~~d~~~v~~lr~~~---g-~~~l-- 180 (316)
T cd03319 123 PLETDYTI--SIDTPEAMAAAAKKAAKRGFPLLKIK-------LGG-------DLEDDIERIRAIREAA---P-DARL-- 180 (316)
T ss_pred CceeEEEE--eCCCHHHHHHHHHHHHHcCCCEEEEE-------eCC-------ChhhHHHHHHHHHHhC---C-CCeE--
Confidence 35554432 23467778888888889999999993 232 1245577888887664 3 4333
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHH---HHh-c
Q 012815 230 RTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE---LEE-L 302 (456)
Q Consensus 230 RTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~e---L~e-l 302 (456)
+-|+......++|++.++++.+.| ..|+|-+ .+.+.++++++..+ +|+..+ +. ..+..+ +-+ -
T Consensus 181 ~vD~n~~~~~~~A~~~~~~l~~~~--l~~iEeP~~~~d~~~~~~L~~~~~-ipIa~~-----E~--~~~~~~~~~~~~~~ 250 (316)
T cd03319 181 RVDANQGWTPEEAVELLRELAELG--VELIEQPVPAGDDDGLAYLRDKSP-LPIMAD-----ES--CFSAADAARLAGGG 250 (316)
T ss_pred EEeCCCCcCHHHHHHHHHHHHhcC--CCEEECCCCCCCHHHHHHHHhcCC-CCEEEe-----CC--CCCHHHHHHHHhcC
Confidence 557766667899999999999985 4667754 35678888888776 786654 11 234433 333 3
Q ss_pred CCCEEeccchH
Q 012815 303 GFKLVAYPLSL 313 (456)
Q Consensus 303 Gv~~Vs~p~~l 313 (456)
+++.|..-+..
T Consensus 251 ~~d~v~~~~~~ 261 (316)
T cd03319 251 AYDGINIKLMK 261 (316)
T ss_pred CCCEEEEeccc
Confidence 57766664443
No 261
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=91.81 E-value=2.6 Score=43.57 Aligned_cols=121 Identities=21% Similarity=0.373 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHhccCCcEEEeCCCCCC--CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHH
Q 012815 133 ISYGEMVDQGQLITQAVSIPVIGDGDNGYG--NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMR 210 (456)
Q Consensus 133 lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG--~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~k 210 (456)
+|+-+++-- . .-.+|+-+- .|++ +++...+.++++.+.|..++||- .|. +.++-+++
T Consensus 113 ~Pv~~LLGg----~-~~~v~~y~s--~~~~~~~~e~~~~~a~~~~~~Gf~~~Kik-------vg~-------~~~~d~~~ 171 (352)
T cd03328 113 LPLARLLGR----A-HDSVPVYGS--GGFTSYDDDRLREQLSGWVAQGIPRVKMK-------IGR-------DPRRDPDR 171 (352)
T ss_pred CcHHHHhcC----C-CCCeEEEEe--cCCCCCCHHHHHHHHHHHHHCCCCEEEee-------cCC-------CHHHHHHH
Confidence 566666531 1 124666542 2333 45667778888888999999992 231 23556788
Q ss_pred HHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHh--CCCCceee
Q 012815 211 IKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEI--SPLVPKMA 282 (456)
Q Consensus 211 I~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~--v~~vP~~~ 282 (456)
|++++++. |+++.+ +-|+.....+++|++.++++.+. +..|+|-+ .+.+.++++.+. .. +|+..
T Consensus 172 v~~vRe~~---G~~~~l--~vDaN~~~~~~~A~~~~~~l~~~--~~~~~EeP~~~~d~~~~~~l~~~~~~~-iPIa~ 240 (352)
T cd03328 172 VAAARRAI---GPDAEL--FVDANGAYSRKQALALARAFADE--GVTWFEEPVSSDDLAGLRLVRERGPAG-MDIAA 240 (352)
T ss_pred HHHHHHHc---CCCCeE--EEECCCCCCHHHHHHHHHHHHHh--CcchhhCCCChhhHHHHHHHHhhCCCC-CCEEe
Confidence 88887664 566555 46888778899999999999987 56788864 356788888888 44 67654
No 262
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=91.77 E-value=0.96 Score=45.92 Aligned_cols=134 Identities=18% Similarity=0.200 Sum_probs=84.6
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhh----ccc---CC----CCCCCHHHHHHHHHHHH-
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAAR----LAL---PD----TGFISYGEMVDQGQLIT- 146 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~----lG~---PD----~~~lt~~Eml~~~r~I~- 146 (456)
+-|++.-+.-+..++-.+-|.---.++.+. .|.+++++=-|.+.. +|. |= .-.-|.+|.+..++-|.
T Consensus 99 ~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y-~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s 177 (286)
T COG2876 99 KLLKRAADETGLPVVTEVMDVRDVEAAAEY-ADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILS 177 (286)
T ss_pred HHHHHHHHHcCCeeEEEecCHHHHHHHHhh-hhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHh
Confidence 344444445556666666666665666555 677777653333221 132 21 11246677777666553
Q ss_pred ---------------------------------hccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCc
Q 012815 147 ---------------------------------QAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGC 193 (456)
Q Consensus 147 ---------------------------------ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~C 193 (456)
+-+++|||+|.-.+.|.-.-+.-+.+..+.+||+|+.||--..|. |
T Consensus 178 ~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~-~ 256 (286)
T COG2876 178 HGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPE-K 256 (286)
T ss_pred CCCCcEEEEecccccccccccceechHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecCCcc-c
Confidence 237899999999998876667777788889999999999765543 3
Q ss_pred cCCCCccccCHHHHHHHHHHH
Q 012815 194 GHTRGRKVVSREEAVMRIKAA 214 (456)
Q Consensus 194 GH~~gk~lvp~ee~v~kI~AA 214 (456)
.-.++++.+++++|.+-++.+
T Consensus 257 AlsD~~Qql~~~~f~~l~~~~ 277 (286)
T COG2876 257 ALSDAKQQLTPEEFEELVKEL 277 (286)
T ss_pred ccCcccccCCHHHHHHHHHHH
Confidence 455677777777665444433
No 263
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=91.70 E-value=4.5 Score=42.69 Aligned_cols=98 Identities=24% Similarity=0.374 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHH-hCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHH
Q 012815 163 NAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (456)
Q Consensus 163 ~~~nv~rtVk~l~~-AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~lde 241 (456)
+++++.+.++++.+ .|..++||-- |+. +.++-+++|++++++. +++.| +.|+......++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv-------G~~------~~~~di~~v~avRea~----~~~~l--~vDaN~~w~~~~ 228 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG-------GVL------PGEEEIEAVKALAEAF----PGARL--RLDPNGAWSLET 228 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec-------CCC------CHHHHHHHHHHHHHhC----CCCcE--EEeCCCCcCHHH
Confidence 46777788888874 6999999942 221 2344577888888764 24333 448877788999
Q ss_pred HHHHHHHhHhcCCCEEEecc-CCCHHHHHHHHHhCCCCceeee
Q 012815 242 SLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~~v~~vP~~~N 283 (456)
|++.++++.+ +..|+|- +++.+.++++.+..+ +|+..+
T Consensus 229 A~~~~~~l~~---~l~~iEeP~~d~~~~~~L~~~~~-~PIa~d 267 (395)
T cd03323 229 AIRLAKELEG---VLAYLEDPCGGREGMAEFRRATG-LPLATN 267 (395)
T ss_pred HHHHHHhcCc---CCCEEECCCCCHHHHHHHHHhcC-CCEEcC
Confidence 9999999988 4668886 357889999999877 787654
No 264
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.67 E-value=1.2 Score=47.66 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=60.5
Q ss_pred HHHHHHHHhC--CCceeecccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE
Q 012815 78 AKSLRQILEL--PGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (456)
Q Consensus 78 a~~Lr~ll~~--~~~lv~pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI 154 (456)
.+.++++.+. +-.+++.++-+.-.|+.+.++|+|+|-++ +-+...... ..+.-..+.-+.+..+..+++..++|||
T Consensus 182 ~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr-~~~g~g~p~ltai~~v~~~~~~~~vpVI 260 (404)
T PRK06843 182 IELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTR-IVAGVGVPQITAICDVYEVCKNTNICII 260 (404)
T ss_pred HHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcce-eecCCCCChHHHHHHHHHHHhhcCCeEE
Confidence 3445555443 23467889999999999999999999876 222100000 1111112222233445566677789999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
+|. |+-++.++. +...+||.+|.+
T Consensus 261 AdG--GI~~~~Di~----KALalGA~aVmv 284 (404)
T PRK06843 261 ADG--GIRFSGDVV----KAIAAGADSVMI 284 (404)
T ss_pred EeC--CCCCHHHHH----HHHHcCCCEEEE
Confidence 873 444554444 344589999998
No 265
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=91.64 E-value=0.75 Score=48.39 Aligned_cols=92 Identities=20% Similarity=0.182 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeC
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~ 157 (456)
-+.+|+.. +.++++-|+-+.-.|+.+.++|+|+|.+|..+-- . + |...-+ ++....|++++++||++|
T Consensus 228 i~~ir~~~--~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGr--q--l-d~~~~~----~~~L~ei~~~~~~~vi~d- 295 (361)
T cd04736 228 LRWLRDLW--PHKLLVKGIVTAEDAKRCIELGADGVILSNHGGR--Q--L-DDAIAP----IEALAEIVAATYKPVLID- 295 (361)
T ss_pred HHHHHHhC--CCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcC--C--C-cCCccH----HHHHHHHHHHhCCeEEEe-
Confidence 44455544 4689999999999999999999999999964421 1 1 322222 334445556667999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeCC
Q 012815 158 DNGYGNAMNVKRTVKGYIKAGFAGIILED 186 (456)
Q Consensus 158 DtGYG~~~nv~rtVk~l~~AGaaGI~IED 186 (456)
.|+-+..++. +....||++|-|--
T Consensus 296 -GGIr~g~Dv~----KALaLGA~aV~iGr 319 (361)
T cd04736 296 -SGIRRGSDIV----KALALGANAVLLGR 319 (361)
T ss_pred -CCCCCHHHHH----HHHHcCCCEEEECH
Confidence 3444444444 34458999998843
No 266
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=91.62 E-value=7.7 Score=40.07 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=54.0
Q ss_pred HHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012815 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (456)
Q Consensus 101 SArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGa 179 (456)
-.+.++..+.+++-+. ...- -...|.. .-+++..++.++.|++.+++||++= ..|+|. ..+.++.++++|+
T Consensus 133 ~~~~i~~i~adal~i~ln~~q---~~~~p~g-~~~f~~~le~i~~i~~~~~vPVivK-~~g~g~---~~~~a~~L~~aGv 204 (333)
T TIGR02151 133 AQEAIDMIEADALAIHLNVLQ---ELVQPEG-DRNFKGWLEKIAEICSQLSVPVIVK-EVGFGI---SKEVAKLLADAGV 204 (333)
T ss_pred HHHHHHHhcCCCEEEcCcccc---cccCCCC-CcCHHHHHHHHHHHHHhcCCCEEEE-ecCCCC---CHHHHHHHHHcCC
Confidence 4455666677777664 1111 1234442 2356778899999999999999986 457764 3577789999999
Q ss_pred cEEEeCC
Q 012815 180 AGIILED 186 (456)
Q Consensus 180 aGI~IED 186 (456)
++|.+-.
T Consensus 205 d~I~Vsg 211 (333)
T TIGR02151 205 SAIDVAG 211 (333)
T ss_pred CEEEECC
Confidence 9999954
No 267
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=91.61 E-value=4.6 Score=41.52 Aligned_cols=151 Identities=13% Similarity=0.069 Sum_probs=81.2
Q ss_pred HHHHHHHhCCcEEEecchHHhh--hhcccCCCCCCCHHHHHHHHHHHHhcc--CCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012815 101 SAKLVEKSGFSFCFTSGFSISA--ARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSa--s~lG~PD~~~lt~~Eml~~~r~I~ra~--~iPVIaD~DtGYG~~~nv~rtVk~l~~ 176 (456)
.|+.+++.||+.|=+=-.+-+- ...|.=..-+-..+-+.+.++++.+++ ++||.+=+-.|+-+.....+.++.+++
T Consensus 80 aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~ 159 (312)
T PRK10550 80 NAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQ 159 (312)
T ss_pred HHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHh
Confidence 4667778888877553111000 011210001123344556677777777 499999988887554456788899999
Q ss_pred hCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhH-hcCCC
Q 012815 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA-DAGAD 255 (456)
Q Consensus 177 AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~-eAGAD 255 (456)
+|++.|+|-..+. .-|.. |.. ... +.+.+|+.+ . +.+++.++ |-... +.++.+. +.|||
T Consensus 160 ~Gvd~i~Vh~Rt~--~~~y~-g~~-~~~-~~i~~ik~~---~---~iPVi~nG--dI~t~-------~da~~~l~~~g~D 219 (312)
T PRK10550 160 AGATELVVHGRTK--EDGYR-AEH-INW-QAIGEIRQR---L---TIPVIANG--EIWDW-------QSAQQCMAITGCD 219 (312)
T ss_pred cCCCEEEECCCCC--ccCCC-CCc-ccH-HHHHHHHhh---c---CCcEEEeC--CcCCH-------HHHHHHHhccCCC
Confidence 9999999965431 11111 111 122 445554432 1 23444444 43322 3333333 57999
Q ss_pred EEEec--cCCCHHHHHHH
Q 012815 256 VLFID--ALASKEEMKAF 271 (456)
Q Consensus 256 ~Ifie--~~~s~eei~~i 271 (456)
+|++- .+.++..++++
T Consensus 220 gVmiGRg~l~nP~lf~~~ 237 (312)
T PRK10550 220 AVMIGRGALNIPNLSRVV 237 (312)
T ss_pred EEEEcHHhHhCcHHHHHh
Confidence 99984 23444444443
No 268
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=91.59 E-value=1.2 Score=43.31 Aligned_cols=128 Identities=19% Similarity=0.167 Sum_probs=73.6
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecch----hhcccHHHHHH
Q 012815 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS----RQALSLEESLR 244 (456)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA----~~~~~ldeAI~ 244 (456)
+.++...+.||+=|-+ |.++.---++|.-..++. +++.. +.+..++-|--. +....++.-.+
T Consensus 11 ~~a~~A~~~GAdRiEL--------c~~l~~GGlTPS~g~i~~---~~~~~---~ipv~vMIRpr~gdF~Ys~~E~~~M~~ 76 (201)
T PF03932_consen 11 EDALAAEAGGADRIEL--------CSNLEVGGLTPSLGLIRQ---AREAV---DIPVHVMIRPRGGDFVYSDEEIEIMKE 76 (201)
T ss_dssp HHHHHHHHTT-SEEEE--------EBTGGGT-B---HHHHHH---HHHHT---TSEEEEE--SSSS-S---HHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEE--------CCCccCCCcCcCHHHHHH---HHhhc---CCceEEEECCCCCCccCCHHHHHHHHH
Confidence 3445667899998887 333221226776555444 44432 357778877533 23456788888
Q ss_pred HHHHhHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCceeeeeeccCCCCC--CCCHHHHHhcCCCEEeccch
Q 012815 245 RSRAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTP--ILNPLELEELGFKLVAYPLS 312 (456)
Q Consensus 245 RakAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N~~~~~g~tp--~lt~~eL~elGv~~Vs~p~~ 312 (456)
..+.+.++|||.+++-.+ -+.+.++++.+...+.|..+..- . ..++ .-..++|.++||++|.....
T Consensus 77 dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRA-f-D~~~d~~~al~~L~~lG~~rVLTSGg 149 (201)
T PF03932_consen 77 DIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRA-F-DEVPDPEEALEQLIELGFDRVLTSGG 149 (201)
T ss_dssp HHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GG-G-GGSSTHHHHHHHHHHHT-SEEEESTT
T ss_pred HHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCc-H-HHhCCHHHHHHHHHhcCCCEEECCCC
Confidence 999999999999998765 35678888887766567666542 2 1122 11358899999999987544
No 269
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=91.59 E-value=9.3 Score=36.92 Aligned_cols=146 Identities=20% Similarity=0.178 Sum_probs=88.8
Q ss_pred HHHHHHhccCCcEEEeCCCCCCCH-HHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 141 QGQLITQAVSIPVIGDGDNGYGNA-MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtGYG~~-~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
.++.+.+.. .||++|.=.+ +. ..+...++.+.++|++.+.+---. | .+-|++++++.+
T Consensus 41 ~i~~l~~~~-~~i~~DlK~~--DIg~tv~~~~~~~~~~gad~~Tvh~~~---------G---------~~~l~~~~~~~~ 99 (216)
T cd04725 41 IVKELRELG-FLVFLDLKLG--DIPNTVAAAAEALLGLGADAVTVHPYG---------G---------SDMLKAALEAAE 99 (216)
T ss_pred HHHHHHHCC-CcEEEEeecC--chHHHHHHHHHHHHhcCCCEEEECCcC---------C---------HHHHHHHHHHHh
Confidence 344444433 8999998865 53 346667777888999999984321 1 235566666655
Q ss_pred hhCCCeEEEEecchhhcc--------cHH-HHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCC
Q 012815 220 ESGSDIVIVARTDSRQAL--------SLE-ESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGK 290 (456)
Q Consensus 220 ~~G~dfvIiARTDA~~~~--------~ld-eAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~ 290 (456)
+.+..+++++.+-+.... ..+ -.+.+++...++|.+.+++.+.. .+++++... + ...-++ ||-
T Consensus 100 ~~~~~~~~v~~lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~-~~~i~~~~~--~---~~~~lt--PGI 171 (216)
T cd04725 100 EKGKGLFAVTVLSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATE-PEALRRALG--P---DFLILT--PGI 171 (216)
T ss_pred ccCCeEEEEEcCCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcc-hHHHHHhhC--C---CCeEEc--CCc
Confidence 445677888776554322 222 25567788889999999876643 345543321 1 222222 333
Q ss_pred CC---------CCCHHHHHhcCCCEEeccchHHH
Q 012815 291 TP---------ILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 291 tp---------~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
.+ ..++++..+.|...++.|-..+.
T Consensus 172 ~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~ 205 (216)
T cd04725 172 GAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQ 205 (216)
T ss_pred CCCCCccccccccCHHHHHHcCCcEEEEChhhcc
Confidence 22 34788888999888777765444
No 270
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=91.55 E-value=0.64 Score=45.75 Aligned_cols=104 Identities=24% Similarity=0.275 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEeCCCC-CCCCccCCCCcccc-----------CHHHHHHHHHHHHHHhHhhCCCeE
Q 012815 159 NGYGNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-----------SREEAVMRIKAAVDARKESGSDIV 226 (456)
Q Consensus 159 tGYG~~~nv~rtVk~l~~AGaaGI~IEDq~-~pK~CGH~~gk~lv-----------p~ee~v~kI~AA~~Ar~~~G~dfv 226 (456)
.||-+..+..+.++.++++||+.++|.=-. .|. .+|..+- ..+...+-++..++.. ..+++
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv----~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~---~~pv~ 80 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELGIPFSDPV----ADGPVIQAASERALANGVTLKDVLELVKEIRKKN---TIPIV 80 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC---CCCEE
Confidence 478788889999999999999999996100 122 2222111 1122233333333221 23566
Q ss_pred EEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHH
Q 012815 227 IVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCE 273 (456)
Q Consensus 227 IiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~ 273 (456)
+..-....-..|++.-++ .+.++|+|.+.++-++- |+..++.+
T Consensus 81 lm~y~n~~~~~G~~~fi~---~~~~aG~~giiipDl~~-ee~~~~~~ 123 (242)
T cd04724 81 LMGYYNPILQYGLERFLR---DAKEAGVDGLIIPDLPP-EEAEEFRE 123 (242)
T ss_pred EEEecCHHHHhCHHHHHH---HHHHCCCcEEEECCCCH-HHHHHHHH
Confidence 665544444455555444 46789999999977764 45555543
No 271
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=91.54 E-value=1 Score=45.97 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=61.3
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCC
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~D 158 (456)
+.++++++. +..+++.+.+.--|+.++++|+|+|.+.|..- -|+.. ..+ .....+++++.+++|||+...
T Consensus 100 ~~i~~lk~~-g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~ea----gGh~g--~~~---~~~ll~~v~~~~~iPviaaGG 169 (307)
T TIGR03151 100 KYIPRLKEN-GVKVIPVVASVALAKRMEKAGADAVIAEGMES----GGHIG--ELT---TMALVPQVVDAVSIPVIAAGG 169 (307)
T ss_pred HHHHHHHHc-CCEEEEEcCCHHHHHHHHHcCCCEEEEECccc----CCCCC--CCc---HHHHHHHHHHHhCCCEEEECC
Confidence 445555444 57778889999999999999999999987631 24421 122 134556667777899999843
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEeCC
Q 012815 159 NGYGNAMNVKRTVKGYIKAGFAGIILED 186 (456)
Q Consensus 159 tGYG~~~nv~rtVk~l~~AGaaGI~IED 186 (456)
.++...+. .+.+.||+||.+=-
T Consensus 170 --I~~~~~~~----~al~~GA~gV~iGt 191 (307)
T TIGR03151 170 --IADGRGMA----AAFALGAEAVQMGT 191 (307)
T ss_pred --CCCHHHHH----HHHHcCCCEeecch
Confidence 34543333 34458999999833
No 272
>TIGR00035 asp_race aspartate racemase.
Probab=91.52 E-value=2.1 Score=41.47 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=64.6
Q ss_pred ccCHHHHHHHHHHHHHHhHhh-CCCeEEEEecch------hhc----ccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHH
Q 012815 201 VVSREEAVMRIKAAVDARKES-GSDIVIVARTDS------RQA----LSLEESLRRSRAFADAGADVLFIDALASKEEMK 269 (456)
Q Consensus 201 lvp~ee~v~kI~AA~~Ar~~~-G~dfvIiARTDA------~~~----~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~ 269 (456)
-..+.++.+||.....+..+. ..+.++.-..+- ... ...+...+-++.++++|||+|++.+-+....+.
T Consensus 12 p~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~ 91 (229)
T TIGR00035 12 PLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAGADFIIMPCNTAHKFAE 91 (229)
T ss_pred HHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCEEEECCccHHHHHH
Confidence 345567788887776665321 245666655543 111 123345555667788999999999976555567
Q ss_pred HHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEecc
Q 012815 270 AFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (456)
Q Consensus 270 ~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p 310 (456)
++.+.++ +|+ +++++. +.+.+++.|.++|..=
T Consensus 92 ~l~~~~~-iPi-i~i~~~-------~~~~~~~~~~~~VgvL 123 (229)
T TIGR00035 92 DIQKAIG-IPL-ISMIEE-------TAEAVKEDGVKKAGLL 123 (229)
T ss_pred HHHHhCC-CCE-echHHH-------HHHHHHHcCCCEEEEE
Confidence 7777776 774 566542 5678888898888553
No 273
>PLN02489 homocysteine S-methyltransferase
Probab=91.52 E-value=2.5 Score=43.83 Aligned_cols=44 Identities=25% Similarity=0.457 Sum_probs=34.7
Q ss_pred HHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCC----CCceeeeee
Q 012815 242 SLRRSRAFADAGADVLFIDALASKEEMKAFCEISP----LVPKMANML 285 (456)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~----~vP~~~N~~ 285 (456)
--++++++.++|+|+|++|.+++.+|++.+++.+. .+|.++.+.
T Consensus 169 ~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t 216 (335)
T PLN02489 169 HRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFN 216 (335)
T ss_pred HHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 34568889999999999999999999988876432 367777765
No 274
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=91.52 E-value=18 Score=36.91 Aligned_cols=169 Identities=13% Similarity=0.142 Sum_probs=96.9
Q ss_pred HHHHHh-CCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCH-HHHHHHHHHHH--HhC
Q 012815 103 KLVEKS-GFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNA-MNVKRTVKGYI--KAG 178 (456)
Q Consensus 103 rl~e~a-GfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~-~nv~rtVk~l~--~AG 178 (456)
+++++. +.-+.|==++++=. .+| |+ |.-.+++.++.++. .++|||+|+=.| +. ..+...++.+. +.|
T Consensus 45 ~ivd~~~~~v~~vK~gla~f~-~~G-~~-G~~~l~~~i~~l~~----~g~~VilD~K~~--DI~nTv~~ya~a~~~~~~g 115 (278)
T PRK00125 45 IIVDATADLVAAFKPQIAYFE-AHG-AE-GLAQLERTIAYLRE----AGVLVIADAKRG--DIGSTAEAYAKAAFESPLE 115 (278)
T ss_pred HHHHhcCCcccEEeccHHHHH-hcC-ch-hhhHHHHHHHHHHH----CCCcEEEEeecC--ChHHHHHHHHHHHhcCccC
Confidence 344444 32223323555432 244 33 33455666655554 268999998876 64 34556667777 689
Q ss_pred ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhc---------c---cHHHHHHHH
Q 012815 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA---------L---SLEESLRRS 246 (456)
Q Consensus 179 aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~---------~---~ldeAI~Ra 246 (456)
++++.+--- ++ .+.++.+++..++.+..++|.++|-.-.+ . ..+...+++
T Consensus 116 ~DavTVhp~--------~G----------~d~l~~~~~~~~~~~k~vfVlvlTSnp~s~~lq~~~~~~~~~l~~~V~~~a 177 (278)
T PRK00125 116 ADAVTVSPY--------MG----------FDSLEPYLEYAEEHGKGVFVLCRTSNPGGSDLQFLRTADGRPLYQHVADLA 177 (278)
T ss_pred CcEEEECCc--------CC----------HHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHhhhccCCCcHHHHHHHHH
Confidence 999988432 11 22344455544433457889998865331 1 135555677
Q ss_pred HHhHh-----cCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCC-CCCHHHHHhcCC
Q 012815 247 RAFAD-----AGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP-ILNPLELEELGF 304 (456)
Q Consensus 247 kAy~e-----AGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp-~lt~~eL~elGv 304 (456)
+.+.+ +|.|.++|-+.. .+|++++.+.++..|.+ + ||-.+ .-+++++.+.|.
T Consensus 178 ~~~~~~~~~~~g~~G~VVgaT~-p~e~~~iR~~~~~~~iL---~--PGigaQGg~~~~~~~~~~ 235 (278)
T PRK00125 178 AALNNLGNCGYGSIGLVVGATF-PPELAAVRKILGGMPLL---I--PGIGAQGGDAEATVRAGG 235 (278)
T ss_pred HHHhccccCCCCCCEEEECCCC-HHHHHHHHHhCCCCeEE---e--CCcCCCCcCHHHHHHHhh
Confidence 76665 899998887743 47888888876643322 1 23222 234677666654
No 275
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=91.48 E-value=4.9 Score=42.24 Aligned_cols=155 Identities=21% Similarity=0.258 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCC--------C---CCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQVS--------P---KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~--------p---K~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~ 234 (456)
...+.+++..+||++||.|--.-+ | +|-..-+| .+.-.--++..|-.++.+ ..|+||.|.-|.-..
T Consensus 145 ~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGG-slenR~Rf~~eii~air~--~vG~d~~v~vRis~~ 221 (361)
T cd04747 145 AFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGG-SLAARSRFAAEVVKAIRA--AVGPDFPIILRFSQW 221 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHH--HcCCCCeEEEEECcc
Confidence 345566778889999998865421 1 22111122 222222222222222222 237789888887641
Q ss_pred --------hcccHHHHHHHHHHhHhcCCCEEEeccC----C-----CHHHHHHHHHhCCCCceeeeeeccCCCCCC----
Q 012815 235 --------QALSLEESLRRSRAFADAGADVLFIDAL----A-----SKEEMKAFCEISPLVPKMANMLEGGGKTPI---- 293 (456)
Q Consensus 235 --------~~~~ldeAI~RakAy~eAGAD~Ifie~~----~-----s~eei~~i~~~v~~vP~~~N~~~~~g~tp~---- 293 (456)
....++|+++-++.+.++|+|.|=+-+- + .....+++.+.++ +|++++ ++-.+.
T Consensus 222 ~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~-~pv~~~----G~i~~~~~~~ 296 (361)
T cd04747 222 KQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTG-LPTITV----GSVGLDGDFI 296 (361)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcC-CCEEEE----CCcccccccc
Confidence 1245789999999999999999755221 1 2234455556665 787654 221100
Q ss_pred -----------CCH---HH-HHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCCC
Q 012815 294 -----------LNP---LE-LEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRI 333 (456)
Q Consensus 294 -----------lt~---~e-L~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~~g~~ 333 (456)
.++ ++ |++-++..|.++-.++.-- +....+++|+.
T Consensus 297 ~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP-----~~~~k~~~g~~ 346 (361)
T cd04747 297 GAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDP-----AWVAKVREGRL 346 (361)
T ss_pred cccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCc-----HHHHHHHcCCc
Confidence 122 33 3344588887766554433 44556677654
No 276
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=91.46 E-value=3.4 Score=42.45 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhccC-----CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCC--------CCC--ccCCCC
Q 012815 134 SYGEMVDQGQLITQAVS-----IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVS--------PKG--CGHTRG 198 (456)
Q Consensus 134 t~~Eml~~~r~I~ra~~-----iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~--------pK~--CGH~~g 198 (456)
..+.+.+.++++.+.++ +||++=+.-++ +.+++.+.++.++++||+||.+-.... +.. .|-..|
T Consensus 181 ~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~-~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG 259 (327)
T cd04738 181 GKEALRELLTAVKEERNKLGKKVPLLVKIAPDL-SDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG 259 (327)
T ss_pred CHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCC-CHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC
Confidence 44555566677777665 99999886543 345678888999999999999865431 000 111123
Q ss_pred ccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC--C-CHHHHHHHHH
Q 012815 199 RKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL--A-SKEEMKAFCE 273 (456)
Q Consensus 199 k~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~--~-s~eei~~i~~ 273 (456)
..+.|. ..+.|+.++++ .+.++-|++=..-... +.+..+..+|||+|.+-.. . ....++++.+
T Consensus 260 ~~~~~~--~l~~v~~l~~~---~~~~ipIi~~GGI~t~-------~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~ 325 (327)
T cd04738 260 APLKER--STEVLRELYKL---TGGKIPIIGVGGISSG-------EDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKR 325 (327)
T ss_pred hhhhHH--HHHHHHHHHHH---hCCCCcEEEECCCCCH-------HHHHHHHHcCCCHHhccHHHHhhCcHHHHHHHh
Confidence 333221 12333333332 2235566665444321 4456666799999987541 2 2455555544
No 277
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=91.43 E-value=0.72 Score=47.82 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=57.5
Q ss_pred HHHHHHhC-CCc-eeecccCChHHHHHHHHhCCcEEEec-chHHhh-h--h--cccCCCCCCCHHHHHHHHHHHHhccCC
Q 012815 80 SLRQILEL-PGV-HQGPACFDALSAKLVEKSGFSFCFTS-GFSISA-A--R--LALPDTGFISYGEMVDQGQLITQAVSI 151 (456)
Q Consensus 80 ~Lr~ll~~-~~~-lv~pgayDalSArl~e~aGfdAI~vS-G~avSa-s--~--lG~PD~~~lt~~Eml~~~r~I~ra~~i 151 (456)
.++.+.+. +.+ ++..|+-++-.|+.+.++|+++|-+| |.+-.. + . .|.|+-+ +..+..++++.++
T Consensus 127 ~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~-------l~ai~ev~~a~~~ 199 (321)
T TIGR01306 127 MIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQ-------LAALRWCAKAARK 199 (321)
T ss_pred HHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchH-------HHHHHHHHHhcCC
Confidence 34443332 345 55666999999999999999999998 433211 1 1 2333211 2445566667789
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012815 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (456)
Q Consensus 152 PVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IE 185 (456)
|||+|.---+| ...+| .+.+||++|.+=
T Consensus 200 pVIadGGIr~~-----~Di~K-ALa~GAd~Vmig 227 (321)
T TIGR01306 200 PIIADGGIRTH-----GDIAK-SIRFGASMVMIG 227 (321)
T ss_pred eEEEECCcCcH-----HHHHH-HHHcCCCEEeec
Confidence 99999433333 23333 344799999984
No 278
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=91.37 E-value=7.2 Score=39.79 Aligned_cols=104 Identities=22% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHH
Q 012815 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLE 240 (456)
Q Consensus 161 YG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ld 240 (456)
|.+...+.+.+++|++.||+-|=|-.+. .-.|.+.++.+|-.+|+.-++++.+.. .+..| -.|.+..
T Consensus 34 ~~~~~~a~~~a~~~~~~GAdIIDIGgeS------TrPg~~~v~~eeE~~Rv~pvI~~l~~~-~~~~I--SIDT~~~---- 100 (282)
T PRK11613 34 HNSLIDAVKHANLMINAGATIIDVGGES------TRPGAAEVSVEEELDRVIPVVEAIAQR-FEVWI--SVDTSKP---- 100 (282)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCC------CCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCeE--EEECCCH----
Confidence 5677888889999999999999986664 123445678888888887666665431 13333 3455543
Q ss_pred HHHHHHHHhHhcCCCEE-EeccCCCHHHHHHHHHhCCCCceee
Q 012815 241 ESLRRSRAFADAGADVL-FIDALASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 241 eAI~RakAy~eAGAD~I-fie~~~s~eei~~i~~~v~~vP~~~ 282 (456)
+. +++..++|||+| =|.++.+. ++.++++... .|+.+
T Consensus 101 ~v---a~~AL~~GadiINDI~g~~d~-~~~~~~a~~~-~~vVl 138 (282)
T PRK11613 101 EV---IRESAKAGAHIINDIRSLSEP-GALEAAAETG-LPVCL 138 (282)
T ss_pred HH---HHHHHHcCCCEEEECCCCCCH-HHHHHHHHcC-CCEEE
Confidence 22 334445799987 23466554 5445555543 45544
No 279
>PLN02334 ribulose-phosphate 3-epimerase
Probab=91.34 E-value=2.5 Score=40.97 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=40.5
Q ss_pred HHHHHhHhcC-CCEEEec----cC--C-----CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 244 RRSRAFADAG-ADVLFID----AL--A-----SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 244 ~RakAy~eAG-AD~Ifie----~~--~-----s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
++.+++.+.| +|.|.+= +. + ..+.++++.+..+.+|+. ..||-++ -+..++.+.|+..++.+.
T Consensus 129 ~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~----a~GGI~~-e~i~~l~~aGad~vvvgs 203 (229)
T PLN02334 129 EAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIE----VDGGVGP-STIDKAAEAGANVIVAGS 203 (229)
T ss_pred HHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEE----EeCCCCH-HHHHHHHHcCCCEEEECh
Confidence 4456666664 9987431 11 1 123455655554434432 2234332 356789999999999998
Q ss_pred hHHHH
Q 012815 312 SLIGV 316 (456)
Q Consensus 312 ~ll~a 316 (456)
.++.+
T Consensus 204 ai~~~ 208 (229)
T PLN02334 204 AVFGA 208 (229)
T ss_pred HHhCC
Confidence 87754
No 280
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=91.29 E-value=2.8 Score=45.08 Aligned_cols=98 Identities=20% Similarity=0.293 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHH-hCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHH
Q 012815 163 NAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (456)
Q Consensus 163 ~~~nv~rtVk~l~~-AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~lde 241 (456)
+++++.+.++++.+ .|...+||.= |+. +.++-+++|++++++. +++.| +.|+......++
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKv-------G~~------~~~~Di~~v~avRea~----~d~~L--~vDAN~~wt~~~ 240 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKG-------GVL------RGEEEIEAVTALAKRF----PQARI--TLDPNGAWSLDE 240 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEec-------CCC------ChHHHHHHHHHHHHhC----CCCeE--EEECCCCCCHHH
Confidence 45667777776664 5999999931 321 2356688999998774 34433 668877788999
Q ss_pred HHHHHHHhHhcCCCEEEeccCC---C----HHHHHHHHHhCCCCceeee
Q 012815 242 SLRRSRAFADAGADVLFIDALA---S----KEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~~---s----~eei~~i~~~v~~vP~~~N 283 (456)
|++.++++.+. ..|+|-+- + .+.++++.+..+ +|+.+.
T Consensus 241 Ai~~~~~Le~~---~~~iEePv~~~d~~~~~~~la~Lr~~~~-iPIa~d 285 (441)
T TIGR03247 241 AIALCKDLKGV---LAYAEDPCGAEQGYSGREVMAEFRRATG-LPTATN 285 (441)
T ss_pred HHHHHHHhhhh---hceEeCCCCcccccchHHHHHHHHHhCC-CCEEcC
Confidence 99999999885 45888752 3 567888988876 787654
No 281
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=91.24 E-value=6.4 Score=40.56 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=53.7
Q ss_pred HHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 102 AKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 102 Arl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
++.++..+.+++.+. .... .+..|.. .-+++.+++.++.+++.+++||++= ..|+|.. .+.++.+.++|++
T Consensus 133 ~~~i~~~~adalel~l~~~q---~~~~~~~-~~df~~~~~~i~~l~~~~~vPVivK-~~g~g~s---~~~a~~l~~~Gvd 204 (326)
T cd02811 133 RRAVEMIEADALAIHLNPLQ---EAVQPEG-DRDFRGWLERIEELVKALSVPVIVK-EVGFGIS---RETAKRLADAGVK 204 (326)
T ss_pred HHHHHhcCCCcEEEeCcchH---hhcCCCC-CcCHHHHHHHHHHHHHhcCCCEEEE-ecCCCCC---HHHHHHHHHcCCC
Confidence 445566788888775 2211 1234442 2357778899999999999999985 3566643 4677889999999
Q ss_pred EEEeCC
Q 012815 181 GIILED 186 (456)
Q Consensus 181 GI~IED 186 (456)
+|.+-.
T Consensus 205 ~I~vsG 210 (326)
T cd02811 205 AIDVAG 210 (326)
T ss_pred EEEECC
Confidence 999944
No 282
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=91.18 E-value=1.1 Score=48.81 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=61.5
Q ss_pred HHHHHHHhC-CC-ceeecccCChHHHHHHHHhCCcEEEec-chHH-hhh----hcccCCCCCCCHHHHHHHHHHHHhccC
Q 012815 79 KSLRQILEL-PG-VHQGPACFDALSAKLVEKSGFSFCFTS-GFSI-SAA----RLALPDTGFISYGEMVDQGQLITQAVS 150 (456)
Q Consensus 79 ~~Lr~ll~~-~~-~lv~pgayDalSArl~e~aGfdAI~vS-G~av-Sas----~lG~PD~~~lt~~Eml~~~r~I~ra~~ 150 (456)
+.++++.+. ++ ++.+-++-++-.|+.+.++|+|+|.++ |.+- ..+ -.|+|.. ..+..+.++++..+
T Consensus 271 ~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~------~ai~~~~~~~~~~~ 344 (495)
T PTZ00314 271 DMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQA------SAVYHVARYARERG 344 (495)
T ss_pred HHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChH------HHHHHHHHHHhhcC
Confidence 456666554 23 455668999999999999999999876 3221 111 1244432 34455666777778
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012815 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (456)
Q Consensus 151 iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IE 185 (456)
+|||+|. |..++.++. | ...+||++|.+=
T Consensus 345 v~vIadG--Gi~~~~di~---k-Ala~GA~~Vm~G 373 (495)
T PTZ00314 345 VPCIADG--GIKNSGDIC---K-ALALGADCVMLG 373 (495)
T ss_pred CeEEecC--CCCCHHHHH---H-HHHcCCCEEEEC
Confidence 9999983 444444444 3 345899999993
No 283
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=91.16 E-value=9.2 Score=39.69 Aligned_cols=156 Identities=15% Similarity=0.055 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCcEEEec---chHHhhhh----cccCCCCCCCHHH----HHHHHHHHHhccCCcEEE-----eCCCCCC-
Q 012815 100 LSAKLVEKSGFSFCFTS---GFSISAAR----LALPDTGFISYGE----MVDQGQLITQAVSIPVIG-----DGDNGYG- 162 (456)
Q Consensus 100 lSArl~e~aGfdAI~vS---G~avSas~----lG~PD~~~lt~~E----ml~~~r~I~ra~~iPVIa-----D~DtGYG- 162 (456)
-.|+.+.++|||.|-+- |+-+.-.. .=..|.--=+++. .++.++.|.++++.||.+ |...| |
T Consensus 146 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~-G~ 224 (337)
T PRK13523 146 QAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPG-GL 224 (337)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC-CC
Confidence 57888899999999875 34433111 1123321114443 233445555556677665 22222 3
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccC-CCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGH-TRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH-~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~lde 241 (456)
+.++..+.++.++++|++-|+|-.....+.... ..+. ..+++++|+.+ .+..++.+++-..
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~----~~~~~~~ik~~------~~ipVi~~G~i~~-------- 286 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGY----QVPFAEHIREH------ANIATGAVGLITS-------- 286 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccc----cHHHHHHHHhh------cCCcEEEeCCCCC--------
Confidence 357788899999999999999966542211110 1111 12344554433 1235556666322
Q ss_pred HHHHHHHhHhcC-CCEEEec--cCCCHHHHHHHHHhC
Q 012815 242 SLRRSRAFADAG-ADVLFID--ALASKEEMKAFCEIS 275 (456)
Q Consensus 242 AI~RakAy~eAG-AD~Ifie--~~~s~eei~~i~~~v 275 (456)
.+.+.++.+.| ||+|.+- .+.+++..+++.+.+
T Consensus 287 -~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~~ 322 (337)
T PRK13523 287 -GAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKEL 322 (337)
T ss_pred -HHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHHc
Confidence 13455556655 9998873 245666667766654
No 284
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=91.12 E-value=13 Score=37.50 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHHH-hCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhccc
Q 012815 160 GYGNAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALS 238 (456)
Q Consensus 160 GYG~~~nv~rtVk~l~~-AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ 238 (456)
|--+++++.++++..-+ .|-.=|+||=- .+.|.|.| +.++-++|+..-.+ .+|.|.--|-...
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi--------~d~~tLlP--D~~etl~Aae~Lv~---eGF~VlPY~~dD~--- 141 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVI--------GDEKTLLP--DPIETLKAAEQLVK---EGFVVLPYTTDDP--- 141 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEe--------cCCcccCC--ChHHHHHHHHHHHh---CCCEEeeccCCCH---
Confidence 43367777788776666 45677777753 23355666 34778888876665 4788887765432
Q ss_pred HHHHHHHHHHhHhcCCCEEEecc--------CCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEecc
Q 012815 239 LEESLRRSRAFADAGADVLFIDA--------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (456)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~--------~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p 310 (456)
--|++++|+||-+|++.+ +.+.+.++-+.++.. +|+.+.. +-| +| -...+-.|||+.-|..-
T Consensus 142 -----v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~-VPviVDA--GiG-~p-SdAa~aMElG~DaVL~N 211 (262)
T COG2022 142 -----VLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEAD-VPVIVDA--GIG-TP-SDAAQAMELGADAVLLN 211 (262)
T ss_pred -----HHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCC-CCEEEeC--CCC-Ch-hHHHHHHhcccceeehh
Confidence 348899999999999875 467888999999885 8987653 212 33 24578899999999876
Q ss_pred chHH
Q 012815 311 LSLI 314 (456)
Q Consensus 311 ~~ll 314 (456)
...-
T Consensus 212 TAiA 215 (262)
T COG2022 212 TAIA 215 (262)
T ss_pred hHhh
Confidence 5533
No 285
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=91.10 E-value=1.4 Score=47.41 Aligned_cols=101 Identities=18% Similarity=0.108 Sum_probs=61.4
Q ss_pred HHHHHHHhC--CCceeecccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEE
Q 012815 79 KSLRQILEL--PGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (456)
Q Consensus 79 ~~Lr~ll~~--~~~lv~pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIa 155 (456)
+.++++.+. +-++++=++-++-.|+.+.++|+|+|-++ |.+-.....-.-+. .++.-+.+..+...++..++|||+
T Consensus 254 ~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~-g~p~~~~i~~~~~~~~~~~vpvia 332 (450)
T TIGR01302 254 DSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGV-GVPQITAVYDVAEYAAQSGIPVIA 332 (450)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCC-CccHHHHHHHHHHHHhhcCCeEEE
Confidence 344444443 33556669999999999999999999876 33311111111111 122224555666667777899999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCC
Q 012815 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILED 186 (456)
Q Consensus 156 D~DtGYG~~~nv~rtVk~l~~AGaaGI~IED 186 (456)
|. |.-++.++. +..++||++|.+-.
T Consensus 333 dG--Gi~~~~di~----kAla~GA~~V~~G~ 357 (450)
T TIGR01302 333 DG--GIRYSGDIV----KALAAGADAVMLGS 357 (450)
T ss_pred eC--CCCCHHHHH----HHHHcCCCEEEECc
Confidence 83 333444444 34458999999833
No 286
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.09 E-value=2.1 Score=42.42 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=81.0
Q ss_pred HHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc---CCcEEEeCCCC---CCCHHHHHHHHHH
Q 012815 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV---SIPVIGDGDNG---YGNAMNVKRTVKG 173 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~---~iPVIaD~DtG---YG~~~nv~rtVk~ 173 (456)
-+.+-++++|+-+|.+==- ..|.+...+++.+||+..++.+.++. +.-|++=-|.= .++.+.+.+-.+.
T Consensus 89 ~tv~~~~~aG~agi~IEDq-----~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~a 163 (238)
T PF13714_consen 89 RTVRELERAGAAGINIEDQ-----RCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKA 163 (238)
T ss_dssp HHHHHHHHCT-SEEEEESB-----STTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEeecc-----ccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHH
Confidence 3556778899988887621 13456667889999999999998764 46677777762 1234567777789
Q ss_pred HHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcC
Q 012815 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (456)
Q Consensus 174 l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAG 253 (456)
|.+|||++|.+|.-. +.++ ++++...+ +.++.++. +-.. . -.+.+.+.|
T Consensus 164 Y~eAGAD~ifi~~~~--------------~~~~-i~~~~~~~------~~Pl~v~~-~~~~--~-------~~~eL~~lG 212 (238)
T PF13714_consen 164 YAEAGADMIFIPGLQ--------------SEEE-IERIVKAV------DGPLNVNP-GPGT--L-------SAEELAELG 212 (238)
T ss_dssp HHHTT-SEEEETTSS--------------SHHH-HHHHHHHH------SSEEEEET-TSSS--S--------HHHHHHTT
T ss_pred HHHcCCCEEEeCCCC--------------CHHH-HHHHHHhc------CCCEEEEc-CCCC--C-------CHHHHHHCC
Confidence 999999999998742 3343 45554333 23567766 3111 1 256678899
Q ss_pred CCEEEeccC
Q 012815 254 ADVLFIDAL 262 (456)
Q Consensus 254 AD~Ifie~~ 262 (456)
...|..+..
T Consensus 213 v~~v~~~~~ 221 (238)
T PF13714_consen 213 VKRVSYGNS 221 (238)
T ss_dssp ESEEEETSH
T ss_pred CcEEEEcHH
Confidence 998887653
No 287
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=91.09 E-value=13 Score=37.18 Aligned_cols=143 Identities=15% Similarity=0.136 Sum_probs=90.3
Q ss_pred eeecccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHh---ccCCcEEEeCCCCCCC-HH
Q 012815 91 HQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPVIGDGDNGYGN-AM 165 (456)
Q Consensus 91 lv~pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~r---a~~iPVIaD~DtGYG~-~~ 165 (456)
+......+.--...+.++|++.|-+. +..-. +-..- ...+.+|.++.+..+.+ ..++.|.+.+++.|+. +.
T Consensus 66 v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~---~~~~~-~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~ 141 (262)
T cd07948 66 ILTHIRCHMDDARIAVETGVDGVDLVFGTSPF---LREAS-HGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLV 141 (262)
T ss_pred EEEEecCCHHHHHHHHHcCcCEEEEEEecCHH---HHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHH
Confidence 34334455555677778899977665 21110 11111 12567887777665544 3468999999999885 57
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHH
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~R 245 (456)
.+.+.++++.++|+..|.|-|.. | +..+++..+.++++++.- +.++-+=... .+--++.-
T Consensus 142 ~l~~~~~~~~~~g~~~i~l~Dt~-----G------~~~P~~v~~~~~~~~~~~---~~~i~~H~Hn------~~Gla~an 201 (262)
T cd07948 142 DLLRVYRAVDKLGVNRVGIADTV-----G------IATPRQVYELVRTLRGVV---SCDIEFHGHN------DTGCAIAN 201 (262)
T ss_pred HHHHHHHHHHHcCCCEEEECCcC-----C------CCCHHHHHHHHHHHHHhc---CCeEEEEECC------CCChHHHH
Confidence 89999999999999999999986 3 334456666666665432 2222222221 22345677
Q ss_pred HHHhHhcCCCEE
Q 012815 246 SRAFADAGADVL 257 (456)
Q Consensus 246 akAy~eAGAD~I 257 (456)
+.+..++||+.|
T Consensus 202 ~~~a~~aG~~~v 213 (262)
T cd07948 202 AYAALEAGATHI 213 (262)
T ss_pred HHHHHHhCCCEE
Confidence 778889999953
No 288
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.06 E-value=6.9 Score=36.84 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=78.7
Q ss_pred HHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHh
Q 012815 140 DQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDAR 218 (456)
Q Consensus 140 ~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar 218 (456)
..++.+++.. +.++++|.-.- ++.+ ..++++.++||+.|.+---. +... +....+..
T Consensus 41 ~~i~~l~~~~~~~~i~~d~k~~--d~~~--~~~~~~~~~Gad~i~vh~~~--------------~~~~----~~~~i~~~ 98 (206)
T TIGR03128 41 EAVKEMKEAFPDRKVLADLKTM--DAGE--YEAEQAFAAGADIVTVLGVA--------------DDAT----IKGAVKAA 98 (206)
T ss_pred HHHHHHHHHCCCCEEEEEEeec--cchH--HHHHHHHHcCCCEEEEeccC--------------CHHH----HHHHHHHH
Confidence 3455565553 56788876221 2211 25678899999988762111 1111 11122222
Q ss_pred HhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEecc-C-------CCHHHHHHHHHhCCCCceeeeeeccCCC
Q 012815 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA-L-------ASKEEMKAFCEISPLVPKMANMLEGGGK 290 (456)
Q Consensus 219 ~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~-~-------~s~eei~~i~~~v~~vP~~~N~~~~~g~ 290 (456)
++.|..+++-.=+. .+..++++.+.+.|+|.|-++. . ...+.++++.+.++..+. +.. ||-
T Consensus 99 ~~~g~~~~~~~~~~-------~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i---~v~-GGI 167 (206)
T TIGR03128 99 KKHGKEVQVDLINV-------KDKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARV---AVA-GGI 167 (206)
T ss_pred HHcCCEEEEEecCC-------CChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcE---EEE-CCc
Confidence 23343333311111 1224556666788999987752 1 245677888777663221 223 343
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 291 TPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 291 tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
++ -+..++.+.|+..+..+..++.+
T Consensus 168 ~~-~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 168 NL-DTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred CH-HHHHHHHHcCCCEEEEeehhcCC
Confidence 32 35789999999999999887763
No 289
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=91.04 E-value=2.5 Score=44.53 Aligned_cols=99 Identities=16% Similarity=0.282 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
++....+.++++.+.|..++||-- |. -+.++-+++|++++++. |+++.+ +.|+.....+++|
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikv-------g~------~~~~~di~~v~avRe~~---G~~~~l--~vDaN~~w~~~~A 221 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKI-------GG------APLDEDLRRIEAALDVL---GDGARL--AVDANGRFDLETA 221 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-------CC------CCHHHHHHHHHHHHHhc---CCCCeE--EEECCCCCCHHHH
Confidence 456677888888899999999931 11 12355678888887663 566555 5688777889999
Q ss_pred HHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCCCCceee
Q 012815 243 LRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~ 282 (456)
++.++++.+. +.-|+|-+ .+.+.++++++..+ +|+..
T Consensus 222 ~~~~~~l~~~--~~~~iEeP~~~~d~~~~~~L~~~~~-iPIa~ 261 (385)
T cd03326 222 IAYAKALAPY--GLRWYEEPGDPLDYALQAELADHYD-GPIAT 261 (385)
T ss_pred HHHHHHhhCc--CCCEEECCCCccCHHHHHHHHhhCC-CCEEc
Confidence 9999999887 46688864 36678888888876 77653
No 290
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=91.03 E-value=8.1 Score=36.01 Aligned_cols=121 Identities=29% Similarity=0.406 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhc---------
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA--------- 236 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~--------- 236 (456)
+..+.+.++.+.|+..|++-+.. .+.+++.+.++.+.+..+..+..++|+.|.|....
T Consensus 13 ~~~~~l~~~~~~gv~~v~lR~k~-------------~~~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~~~~dGvHl~ 79 (180)
T PF02581_consen 13 DFLEQLEAALAAGVDLVQLREKD-------------LSDEELLELARRLAELCQKYGVPLIINDRVDLALELGADGVHLG 79 (180)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SS-------------S-HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHHCT-SEEEEB
T ss_pred hHHHHHHHHHHCCCcEEEEcCCC-------------CCccHHHHHHHHHHHHhhcceEEEEecCCHHHHHhcCCCEEEec
Confidence 45677778888999999997763 12345555555555555444567888888776321
Q ss_pred -----------------------ccHHHHHHHHHHhHhcCCCEEEeccC-----------CCHHHHHHHHHhCCCCceee
Q 012815 237 -----------------------LSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 237 -----------------------~~ldeAI~RakAy~eAGAD~Ifie~~-----------~s~eei~~i~~~v~~vP~~~ 282 (456)
+..+| ++...+.|+|.+++-.+ ...+.++++++..+ +|+.+
T Consensus 80 ~~~~~~~~~r~~~~~~~~ig~S~h~~~e----~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~-~pv~A 154 (180)
T PF02581_consen 80 QSDLPPAEARKLLGPDKIIGASCHSLEE----AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASP-IPVYA 154 (180)
T ss_dssp TTSSSHHHHHHHHTTTSEEEEEESSHHH----HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTS-SCEEE
T ss_pred ccccchHHhhhhcccceEEEeecCcHHH----HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCC-CCEEE
Confidence 12333 45555899999998543 13678888888877 66542
Q ss_pred eeeccCCCCCCCCHHHHHhcCCCEEec
Q 012815 283 NMLEGGGKTPILNPLELEELGFKLVAY 309 (456)
Q Consensus 283 N~~~~~g~tp~lt~~eL~elGv~~Vs~ 309 (456)
+ ||-+| -+..++.++|+.-|..
T Consensus 155 --l--GGI~~-~~i~~l~~~Ga~gvAv 176 (180)
T PF02581_consen 155 --L--GGITP-ENIPELREAGADGVAV 176 (180)
T ss_dssp --E--SS--T-TTHHHHHHTT-SEEEE
T ss_pred --E--cCCCH-HHHHHHHHcCCCEEEE
Confidence 2 45444 5689999999987754
No 291
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=91.03 E-value=0.89 Score=41.09 Aligned_cols=76 Identities=22% Similarity=0.199 Sum_probs=49.5
Q ss_pred HhHhcCCCEEEeccCC--CHHHHHHHHHhCCC--CceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHH
Q 012815 248 AFADAGADVLFIDALA--SKEEMKAFCEISPL--VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQD 323 (456)
Q Consensus 248 Ay~eAGAD~Ifie~~~--s~eei~~i~~~v~~--vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~ 323 (456)
+..+.+||+|.+-++. ..+.++++.+++.. .+.+. ++. +|..|.-..++|+++|+..++.|.+-+...+.++..
T Consensus 48 aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~-viv-GG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 48 QAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDIL-VVV-GGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred HHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCE-EEE-eCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 3346788988887753 44556666553321 11111 222 354555567899999999999999988888777776
Q ss_pred HH
Q 012815 324 AL 325 (456)
Q Consensus 324 ~l 325 (456)
.+
T Consensus 126 ~~ 127 (132)
T TIGR00640 126 KL 127 (132)
T ss_pred HH
Confidence 54
No 292
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=91.01 E-value=1.3 Score=46.50 Aligned_cols=84 Identities=19% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc--CCcEEEeCCCCCCCHH
Q 012815 88 PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAM 165 (456)
Q Consensus 88 ~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~--~iPVIaD~DtGYG~~~ 165 (456)
+.|+++=|+-+.--|+.+.++|+++|.+|+.+= . .-|.+..+++. ...|++++ .+||++|..-- +..
T Consensus 221 ~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGG---r--~ld~~~~~~~~----l~~i~~a~~~~i~vi~dGGIr--~g~ 289 (351)
T cd04737 221 GLPVIVKGIQSPEDADVAINAGADGIWVSNHGG---R--QLDGGPASFDS----LPEIAEAVNHRVPIIFDSGVR--RGE 289 (351)
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCC---c--cCCCCchHHHH----HHHHHHHhCCCCeEEEECCCC--CHH
Confidence 468888889999999999999999999996441 1 12444444432 33455555 59999984332 333
Q ss_pred HHHHHHHHHHHhCccEEEeCC
Q 012815 166 NVKRTVKGYIKAGFAGIILED 186 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IED 186 (456)
++. |.+ ..||++|.|--
T Consensus 290 Di~---kaL-alGA~~V~iGr 306 (351)
T cd04737 290 HVF---KAL-ASGADAVAVGR 306 (351)
T ss_pred HHH---HHH-HcCCCEEEECH
Confidence 333 334 48999999944
No 293
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=90.86 E-value=3.6 Score=43.13 Aligned_cols=154 Identities=14% Similarity=0.163 Sum_probs=93.1
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
|+.+.++|++.|=++++. + -.-.|-.. .-.|++..++.+.. +.++.++ .+ .+-+++..++|+..
T Consensus 74 a~~L~~~GV~~IEvGs~v-s--pk~vPqma--d~~ev~~~i~~~~~-~~~~~l~------~n----~~die~A~~~g~~~ 137 (347)
T PLN02746 74 IQRLVSSGLPVVEATSFV-S--PKWVPQLA--DAKDVMAAVRNLEG-ARFPVLT------PN----LKGFEAAIAAGAKE 137 (347)
T ss_pred HHHHHHcCCCEEEECCCc-C--cccccccc--cHHHHHHHHHhccC-CceeEEc------CC----HHHHHHHHHcCcCE
Confidence 456778899999998663 2 12245432 44566666654322 3344443 13 45556677899999
Q ss_pred EEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEE-EEec---chhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VART---DSRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 182 I~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvI-iART---DA~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
|++-=...+ .|...+--.+.+|.+++++.+++.+++.|..+.+ +.-+ ......+.+..++-++.+.++|||.|
T Consensus 138 v~i~~s~Sd---~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I 214 (347)
T PLN02746 138 VAVFASASE---SFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEI 214 (347)
T ss_pred EEEEEecCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 998643322 1332222256789999998888877765532210 1111 11122357888899999999999999
Q ss_pred Eec---cCCCHHHHHHHHHh
Q 012815 258 FID---ALASKEEMKAFCEI 274 (456)
Q Consensus 258 fie---~~~s~eei~~i~~~ 274 (456)
.+- |.-.+.++.++.+.
T Consensus 215 ~l~DT~G~a~P~~v~~lv~~ 234 (347)
T PLN02746 215 SLGDTIGVGTPGTVVPMLEA 234 (347)
T ss_pred EecCCcCCcCHHHHHHHHHH
Confidence 875 34456666666654
No 294
>PRK15452 putative protease; Provisional
Probab=90.83 E-value=5.7 Score=42.96 Aligned_cols=140 Identities=10% Similarity=0.115 Sum_probs=81.2
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012815 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (456)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakA 248 (456)
+.++..+++||++|-+..+.+--|.. ....+.+++.+ +++-++..|..+.+..-+=.. ...+++..+-.+.
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~----~~~f~~edl~e----av~~ah~~g~kvyvt~n~i~~-e~el~~~~~~l~~ 84 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVR----NNEFNHENLAL----GINEAHALGKKFYVVVNIAPH-NAKLKTFIRDLEP 84 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhh----ccCCCHHHHHH----HHHHHHHcCCEEEEEecCcCC-HHHHHHHHHHHHH
Confidence 44557778999999997665322221 11234455443 333333334444443222111 2345666677777
Q ss_pred hHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHH
Q 012815 249 FADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQ 322 (456)
Q Consensus 249 y~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~ 322 (456)
..++|+|+|.+-. ...+..+.+..|.+|+.+.... ..+...+.+-++++|+++|+.+.-+-..-++.|.
T Consensus 85 l~~~gvDgvIV~d---~G~l~~~ke~~p~l~ih~stql--ni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~ 153 (443)
T PRK15452 85 VIAMKPDALIMSD---PGLIMMVREHFPEMPIHLSVQA--NAVNWATVKFWQQMGLTRVILSRELSLEEIEEIR 153 (443)
T ss_pred HHhCCCCEEEEcC---HHHHHHHHHhCCCCeEEEEecc--cCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHH
Confidence 7899999999854 4556555565665555433211 1233445677899999999888877655555554
No 295
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=90.75 E-value=13 Score=37.40 Aligned_cols=205 Identities=20% Similarity=0.212 Sum_probs=106.8
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEE--EeCC--CCCCC-HHH-HHHHHHHH
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI--GDGD--NGYGN-AMN-VKRTVKGY 174 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVI--aD~D--tGYG~-~~n-v~rtVk~l 174 (456)
-|+.+.++|++.|=+++-+.-.+..++-.. +-.|.+..++.... +.++. +=+. -||.. |.+ ....+++.
T Consensus 26 ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~---~~~e~i~~~~~~~~--~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~ 100 (275)
T cd07937 26 IAEALDEAGFFSLEVWGGATFDVCMRFLNE---DPWERLRELRKAMP--NTPLQMLLRGQNLVGYRHYPDDVVELFVEKA 100 (275)
T ss_pred HHHHHHHcCCCEEEccCCcchhhhccccCC---CHHHHHHHHHHhCC--CCceehhcccccccCccCCCcHHHHHHHHHH
Confidence 477788999999988742211122344322 11333333333222 23333 2222 34432 344 45667888
Q ss_pred HHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEE-EEecchhhcccHHHHHHHHHHhHhcC
Q 012815 175 IKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VARTDSRQALSLEESLRRSRAFADAG 253 (456)
Q Consensus 175 ~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvI-iARTDA~~~~~ldeAI~RakAy~eAG 253 (456)
.+.|+..|+|-+... + ++++..+++..++.|..+.+ +.=+++ .....+..++.++...++|
T Consensus 101 ~~~g~~~iri~~~~~-------------~----~~~~~~~i~~ak~~G~~v~~~i~~~~~-~~~~~~~~~~~~~~~~~~G 162 (275)
T cd07937 101 AKNGIDIFRIFDALN-------------D----VRNLEVAIKAVKKAGKHVEGAICYTGS-PVHTLEYYVKLAKELEDMG 162 (275)
T ss_pred HHcCCCEEEEeecCC-------------h----HHHHHHHHHHHHHCCCeEEEEEEecCC-CCCCHHHHHHHHHHHHHcC
Confidence 899999999976531 1 33444444444444432222 111233 2345677888899999999
Q ss_pred CCEEEecc---CCCHHHHHHHHHhCC-CCceeeeeeccCCCCCCCC---HHHHHhcCCCEEeccchHHH--HHHHHHHHH
Q 012815 254 ADVLFIDA---LASKEEMKAFCEISP-LVPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLIG--VSVRAMQDA 324 (456)
Q Consensus 254 AD~Ifie~---~~s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt---~~eL~elGv~~Vs~p~~ll~--aa~~A~~~~ 324 (456)
||.|.+.- .-.++++.++.+.+. .+|.++.+ +.+. +..+. .-.--+.|++.|-.....+. +.-.++++.
T Consensus 163 a~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~-H~Hn-d~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l 240 (275)
T cd07937 163 ADSICIKDMAGLLTPYAAYELVKALKKEVGLPIHL-HTHD-TSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESM 240 (275)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEE-EecC-CCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHH
Confidence 99998852 345566665554321 12233332 2111 12222 23334679888876554443 444555555
Q ss_pred HHHHHc
Q 012815 325 LTAIKG 330 (456)
Q Consensus 325 l~~i~~ 330 (456)
+..|..
T Consensus 241 ~~~L~~ 246 (275)
T cd07937 241 VAALRG 246 (275)
T ss_pred HHHHHc
Confidence 555543
No 296
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=90.74 E-value=19 Score=35.82 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=61.0
Q ss_pred HHHHHHhCCCcee--ecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeC
Q 012815 80 SLRQILELPGVHQ--GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (456)
Q Consensus 80 ~Lr~ll~~~~~lv--~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~ 157 (456)
.|+++++++++++ .....++..+.++..+|||.|++=- . +|. .+..++...++.+ +..+..++|=.
T Consensus 2 ~lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iDl-E-----H~~-----~~~~~~~~~~~a~-~~~g~~~~VRv 69 (249)
T TIGR02311 2 QFKQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLIDG-E-----HAP-----NDVRTILSQLQAL-APYPSSPVVRP 69 (249)
T ss_pred hHHHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEec-c-----CCC-----CCHHHHHHHHHHH-HhcCCCcEEEC
Confidence 4889999888743 3466678888888899999999752 1 222 4777777766554 33455777776
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 158 DNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 158 DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
+.. ++. .+++...+|+.||.+
T Consensus 70 ~~~--~~~----~i~~~Ld~Ga~gIiv 90 (249)
T TIGR02311 70 AIG--DPV----LIKQLLDIGAQTLLV 90 (249)
T ss_pred CCC--CHH----HHHHHhCCCCCEEEe
Confidence 554 322 567888999999987
No 297
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=90.73 E-value=0.86 Score=43.50 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=55.5
Q ss_pred HHHHHHHHHhHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012815 240 EESLRRSRAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (456)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll 314 (456)
++-++.|++|+++||++|.+... .+.+.++.+.+.+. +|+.+ .+ +-.+....+++.++|+..|..+...+
T Consensus 31 ~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~-iPi~~---~~-~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 31 FDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVS-LPVLR---KD-FIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcC-CCEEE---CC-eecCHHHHHHHHHcCCCEEEEeeccC
Confidence 45688999999999999987532 35577788877664 67653 11 22222346889999999999876654
Q ss_pred HHHHHHHHHHHHHHH
Q 012815 315 GVSVRAMQDALTAIK 329 (456)
Q Consensus 315 ~aa~~A~~~~l~~i~ 329 (456)
.. ..+++.++..+
T Consensus 106 ~~--~~~~~~~~~~~ 118 (217)
T cd00331 106 DD--EQLKELYELAR 118 (217)
T ss_pred CH--HHHHHHHHHHH
Confidence 42 34445554444
No 298
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=90.71 E-value=1.9 Score=45.74 Aligned_cols=92 Identities=10% Similarity=0.039 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeC
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~ 157 (456)
-+.|++.. +.++++-|+-+.-.|+.+.++|+++|.+|+.+- ...|.+.-|++-+.+..+.+. -.+||++|.
T Consensus 245 i~~lr~~~--~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGG-----r~~d~~~~t~~~L~ei~~~~~--~~~~vi~dG 315 (383)
T cd03332 245 LAFLREWT--DLPIVLKGILHPDDARRAVEAGVDGVVVSNHGG-----RQVDGSIAALDALPEIVEAVG--DRLTVLFDS 315 (383)
T ss_pred HHHHHHhc--CCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCC-----cCCCCCcCHHHHHHHHHHHhc--CCCeEEEeC
Confidence 34444433 568999999999999999999999999996551 123555444443332222221 149999984
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 158 DNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 158 DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
--- +..++. +....||.+|.|
T Consensus 316 GIr--~G~Dv~----KALaLGA~~v~i 336 (383)
T cd03332 316 GVR--TGADIM----KALALGAKAVLI 336 (383)
T ss_pred CcC--cHHHHH----HHHHcCCCEEEE
Confidence 333 333444 334579999988
No 299
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=90.53 E-value=2.3 Score=43.31 Aligned_cols=43 Identities=33% Similarity=0.475 Sum_probs=35.0
Q ss_pred HHHHHhHhcCCCEEEeccCCCHHHHHHHHHhC----CCCceeeeeec
Q 012815 244 RRSRAFADAGADVLFIDALASKEEMKAFCEIS----PLVPKMANMLE 286 (456)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v----~~vP~~~N~~~ 286 (456)
++++++.++|+|+|++|.+++.+|++.+.+.. +..|.++++.-
T Consensus 144 ~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~ 190 (304)
T PRK09485 144 PRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTL 190 (304)
T ss_pred HHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 55889999999999999999999988777543 25788888763
No 300
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=90.48 E-value=2.2 Score=43.02 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=60.6
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHh
Q 012815 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (456)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy 249 (456)
.++.+..+|.+.|.|+-+ |. .++.+++..-|+++... +...+.|.-.... ...+..
T Consensus 31 ~~E~~a~~GfD~v~iD~E-------Hg----~~~~~~l~~~i~a~~~~------g~~~lVRvp~~~~-------~~i~r~ 86 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGE-------HA----PNTIQDLYHQLQAIAPY------ASQPVIRPVEGSK-------PLIKQV 86 (267)
T ss_pred HHHHHHHcCCCEEEEccc-------cC----CCCHHHHHHHHHHHHhc------CCCeEEECCCCCH-------HHHHHH
Confidence 345567799999999665 54 45777777777776532 3445677654321 335668
Q ss_pred HhcCCCEEEeccCCCHHHHHHHHHhCC
Q 012815 250 ADAGADVLFIDALASKEEMKAFCEISP 276 (456)
Q Consensus 250 ~eAGAD~Ifie~~~s~eei~~i~~~v~ 276 (456)
.++||+.|++|.+.+.|+++++++...
T Consensus 87 LD~GA~GIivP~V~saeeA~~~V~a~r 113 (267)
T PRK10128 87 LDIGAQTLLIPMVDTAEQARQVVSATR 113 (267)
T ss_pred hCCCCCeeEecCcCCHHHHHHHHHhcC
Confidence 899999999999999999999998754
No 301
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=90.48 E-value=22 Score=37.15 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=94.5
Q ss_pred HHHHHHHhCC--CceeecccCChHHHHHHHHhCCcEEEecc-hH--HhhhhcccCCCCCCCHHHHHHHHHHHH---hccC
Q 012815 79 KSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTSG-FS--ISAARLALPDTGFISYGEMVDQGQLIT---QAVS 150 (456)
Q Consensus 79 ~~Lr~ll~~~--~~lv~pgayDalSArl~e~aGfdAI~vSG-~a--vSas~lG~PD~~~lt~~Eml~~~r~I~---ra~~ 150 (456)
+.++.+.+.. ..+.+.+-.+.-..+.+.++|++.|.+.. .. .....++ .+.+|.++.+.... +..+
T Consensus 53 e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~s~~e~l~~~~~~i~~ak~~g 126 (365)
T TIGR02660 53 AVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLR------KDRAWVLERLARLVSFARDRG 126 (365)
T ss_pred HHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhC------cCHHHHHHHHHHHHHHHHhCC
Confidence 4566665432 23444443444445566778998876652 11 1111122 46777776655443 3346
Q ss_pred CcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE
Q 012815 151 IPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (456)
Q Consensus 151 iPVIaD~DtGYG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA 229 (456)
..|.+.+++++- ++..+.+.++.+.++|+..|.|-|.+ |. ..++++.+.|++.++.. +..+-+
T Consensus 127 ~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~-----G~------~~P~~v~~lv~~l~~~~---~v~l~~-- 190 (365)
T TIGR02660 127 LFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTV-----GI------LDPFSTYELVRALRQAV---DLPLEM-- 190 (365)
T ss_pred CEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccC-----CC------CCHHHHHHHHHHHHHhc---CCeEEE--
Confidence 778889998754 56789999999999999999999986 43 34566777776665432 111211
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 230 RTDSRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 230 RTDA~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
..-+++--|+.-+.+..+|||+.|
T Consensus 191 ----H~HNd~GlA~ANalaA~~aGa~~v 214 (365)
T TIGR02660 191 ----HAHNDLGMATANTLAAVRAGATHV 214 (365)
T ss_pred ----EecCCCChHHHHHHHHHHhCCCEE
Confidence 112233456777888889999965
No 302
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=90.46 E-value=7.7 Score=40.53 Aligned_cols=83 Identities=23% Similarity=0.250 Sum_probs=57.0
Q ss_pred cCChH-HHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHH
Q 012815 96 CFDAL-SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKG 173 (456)
Q Consensus 96 ayDal-SArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~ 173 (456)
.||.- -++.++..+.+++-+. ....- ...|. +.-+++.+++.++.|++.+++||++=. .|+|.. .+.++.
T Consensus 134 ~~~~~~~~~~~~~~~adal~l~l~~~qe---~~~p~-g~~~f~~~le~i~~i~~~~~vPVivK~-~g~g~s---~~~a~~ 205 (352)
T PRK05437 134 GYGVEEAQRAVEMIEADALQIHLNPLQE---LVQPE-GDRDFRGWLDNIAEIVSALPVPVIVKE-VGFGIS---KETAKR 205 (352)
T ss_pred CCCHHHHHHHHHhcCCCcEEEeCccchh---hcCCC-CcccHHHHHHHHHHHHHhhCCCEEEEe-CCCCCc---HHHHHH
Confidence 45533 3455677788888775 21111 22333 223577888999999999999999853 466643 577788
Q ss_pred HHHhCccEEEeCC
Q 012815 174 YIKAGFAGIILED 186 (456)
Q Consensus 174 l~~AGaaGI~IED 186 (456)
++++|+++|.+-.
T Consensus 206 l~~~Gvd~I~Vsg 218 (352)
T PRK05437 206 LADAGVKAIDVAG 218 (352)
T ss_pred HHHcCCCEEEECC
Confidence 9999999999944
No 303
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=90.43 E-value=10 Score=37.96 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
++..+.+.++++++.||+-|-|-... ...+...++.++-.+|+..++++.++. .++.|-. |+... ++
T Consensus 21 ~~~~~~~~a~~~~~~GA~iIDIG~~s------t~p~~~~i~~~~E~~rl~~~v~~~~~~-~~~plsi--DT~~~----~v 87 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADIIDVGGES------TRPGADRVSPEEELNRVVPVIKALRDQ-PDVPISV--DTYRA----EV 87 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCC------CCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCeEEE--eCCCH----HH
Confidence 56789999999999999999993321 122344567777778888888776642 2444433 44443 23
Q ss_pred HHHHHHhHhcCCCEEEe-ccCCCHHHHHHHHHhCCCCceee
Q 012815 243 LRRSRAFADAGADVLFI-DALASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifi-e~~~s~eei~~i~~~v~~vP~~~ 282 (456)
++.|. ++|+|+|-= .+.++ +++..+++... .|+.+
T Consensus 88 i~~al---~~G~~iINsis~~~~-~~~~~l~~~~~-~~vV~ 123 (257)
T TIGR01496 88 ARAAL---EAGADIINDVSGGQD-PAMLEVAAEYG-VPLVL 123 (257)
T ss_pred HHHHH---HcCCCEEEECCCCCC-chhHHHHHHcC-CcEEE
Confidence 33333 359998752 22233 46666676654 45554
No 304
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.42 E-value=2.4 Score=43.09 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=55.0
Q ss_pred HHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCC---Cceeeeeecc
Q 012815 211 IKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPL---VPKMANMLEG 287 (456)
Q Consensus 211 I~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~---vP~~~N~~~~ 287 (456)
+..++...+...+...|.-..|. ++.++.++++|||.|.++.+ +.++++++++.+.. -|... +...
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~~---------leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~~-leaS 237 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVES---------LEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERVK-IEVS 237 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCC---------HHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCEE-EEEE
Confidence 44444333332345556666654 34566678899999999987 45788888775411 02211 1222
Q ss_pred CCCCCCCCHHHHHhcCCCEEeccch
Q 012815 288 GGKTPILNPLELEELGFKLVAYPLS 312 (456)
Q Consensus 288 ~g~tp~lt~~eL~elGv~~Vs~p~~ 312 (456)
||- ..-+..++++.|+..++.+..
T Consensus 238 GGI-~~~ni~~yA~tGvD~Is~gal 261 (278)
T PRK08385 238 GGI-TPENIEEYAKLDVDVISLGAL 261 (278)
T ss_pred CCC-CHHHHHHHHHcCCCEEEeChh
Confidence 333 224578999999999998763
No 305
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=90.38 E-value=1.6 Score=45.77 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=55.3
Q ss_pred CceeecccCChHHHHHHHHhCCcEEEec-chH---Hhhhhc--ccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCC
Q 012815 89 GVHQGPACFDALSAKLVEKSGFSFCFTS-GFS---ISAARL--ALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG 162 (456)
Q Consensus 89 ~~lv~pgayDalSArl~e~aGfdAI~vS-G~a---vSas~l--G~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG 162 (456)
-++++=|+-++-.|+-+.++|.|+|-++ |.+ .+-... |+| .-.-+..+...++..++|||+|..--|.
T Consensus 150 ~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~P------Q~tAv~~~a~~a~~~~v~iIADGGi~~s 223 (352)
T PF00478_consen 150 VPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVP------QLTAVYECAEAARDYGVPIIADGGIRTS 223 (352)
T ss_dssp SEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCT------HHHHHHHHHHHHHCTTSEEEEESS-SSH
T ss_pred ceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCc------HHHHHHHHHHHhhhccCceeecCCcCcc
Confidence 4677889999999999999999999998 322 211122 444 3344555666677778999999554432
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCC
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILED 186 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IED 186 (456)
-..+| .+.+||+.|.+-.
T Consensus 224 -----GDi~K-Ala~GAd~VMlG~ 241 (352)
T PF00478_consen 224 -----GDIVK-ALAAGADAVMLGS 241 (352)
T ss_dssp -----HHHHH-HHHTT-SEEEEST
T ss_pred -----cceee-eeeecccceeech
Confidence 23333 4458999999933
No 306
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=90.28 E-value=2.2 Score=42.55 Aligned_cols=83 Identities=18% Similarity=0.142 Sum_probs=59.3
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHh
Q 012815 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (456)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy 249 (456)
.++.+..+|.+.|.|+-+ |. .++.+++..-|+|+... +...+.|.-.... ...+..
T Consensus 25 ~~e~~a~~G~D~v~iD~E-------Hg----~~~~~~~~~~~~a~~~~------g~~~~VRvp~~~~-------~~i~r~ 80 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGE-------HA----PNDVLTFIPQLMALKGS------ASAPVVRPPWNEP-------VIIKRL 80 (249)
T ss_pred HHHHHHhcCCCEEEEecc-------cC----CCCHHHHHHHHHHHhhc------CCCcEEECCCCCH-------HHHHHH
Confidence 345667799999999666 54 45667776666665432 3455677644321 334557
Q ss_pred HhcCCCEEEeccCCCHHHHHHHHHhCC
Q 012815 250 ADAGADVLFIDALASKEEMKAFCEISP 276 (456)
Q Consensus 250 ~eAGAD~Ifie~~~s~eei~~i~~~v~ 276 (456)
.++||+.|++|.+.+.|+++++++...
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a~k 107 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAATR 107 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 799999999999999999999998654
No 307
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=90.26 E-value=5.3 Score=41.94 Aligned_cols=144 Identities=16% Similarity=0.075 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC--ccEEEeCCCCCCCCccCCCCccccCHHHHHH
Q 012815 132 FISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG--FAGIILEDQVSPKGCGHTRGRKVVSREEAVM 209 (456)
Q Consensus 132 ~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG--aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~ 209 (456)
.++.++....++.+......-+.+ .-|-..+-++-++.+.++| ++.|.| |-. -||.. -+++
T Consensus 77 ~~~~e~~~~~v~~~~~~~~~~~~v----svG~~~~d~er~~~L~~a~~~~d~ivi-D~A----hGhs~--------~~i~ 139 (343)
T TIGR01305 77 HYSVDEWKAFATNSSPDCLQNVAV----SSGSSDNDLEKMTSILEAVPQLKFICL-DVA----NGYSE--------HFVE 139 (343)
T ss_pred CCCHHHHHHHHHhhcccccceEEE----EeccCHHHHHHHHHHHhcCCCCCEEEE-ECC----CCcHH--------HHHH
Confidence 468888777777655544334444 1233344566677888885 999999 654 36652 3444
Q ss_pred HHHHHHHHhHhhCCCeEEEEe-cchhhcccHHHHHHHHHHhHhcCCCEEEec------c---------CCCHHHHHHHHH
Q 012815 210 RIKAAVDARKESGSDIVIVAR-TDSRQALSLEESLRRSRAFADAGADVLFID------A---------LASKEEMKAFCE 273 (456)
Q Consensus 210 kI~AA~~Ar~~~G~dfvIiAR-TDA~~~~~ldeAI~RakAy~eAGAD~Ifie------~---------~~s~eei~~i~~ 273 (456)
.|+..++.. ++..|++= .-. -+.++...+||||+|.+- + .+....+.++++
T Consensus 140 ~ik~ir~~~----p~~~viaGNV~T---------~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~ 206 (343)
T TIGR01305 140 FVKLVREAF----PEHTIMAGNVVT---------GEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECAD 206 (343)
T ss_pred HHHHHHhhC----CCCeEEEecccC---------HHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHH
Confidence 455444432 44555544 322 245778888999999864 1 134455555555
Q ss_pred hCC--CCceeeeeeccCCCCCCCCH-HHHHhcCCCEEecc
Q 012815 274 ISP--LVPKMANMLEGGGKTPILNP-LELEELGFKLVAYP 310 (456)
Q Consensus 274 ~v~--~vP~~~N~~~~~g~tp~lt~-~eL~elGv~~Vs~p 310 (456)
... .+|+++ .+|-.-.-+. +-| .+|...|-.|
T Consensus 207 aa~~~~v~VIa----DGGIr~~gDI~KAL-A~GAd~VMlG 241 (343)
T TIGR01305 207 AAHGLKGHIIS----DGGCTCPGDVAKAF-GAGADFVMLG 241 (343)
T ss_pred HhccCCCeEEE----cCCcCchhHHHHHH-HcCCCEEEEC
Confidence 443 245443 2342211222 333 4888888887
No 308
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=90.23 E-value=9.8 Score=38.49 Aligned_cols=134 Identities=15% Similarity=0.034 Sum_probs=82.7
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhc---cCCcEEEeCCCCCC-----CHHHHHHHHH
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQA---VSIPVIGDGDNGYG-----NAMNVKRTVK 172 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra---~~iPVIaD~DtGYG-----~~~nv~rtVk 172 (456)
....+.++|++.|-+.- .+|-. +-.-- ...+.+|.++.++.+.+. .++.|.+.+++ || ++..+.+.++
T Consensus 79 ~~~~A~~~g~~~i~i~~-~~S~~-h~~~~-~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~r~~~~~~~~~~~ 154 (280)
T cd07945 79 SVDWIKSAGAKVLNLLT-KGSLK-HCTEQ-LRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGMRDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHCCCCEEEEEE-eCCHH-HHHHH-HCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCCcCCHHHHHHHHH
Confidence 34556667998776652 11100 11111 125788888777766543 35777777776 44 4678999999
Q ss_pred HHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhc
Q 012815 173 GYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA 252 (456)
Q Consensus 173 ~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eA 252 (456)
.+.++|+.-|.|-|.. | +..++++.+.+++.++.. ++.-|-.-+ -+.+--|+.-+.+..++
T Consensus 155 ~~~~~G~~~i~l~DT~-----G------~~~P~~v~~l~~~l~~~~----~~~~i~~H~----Hnd~Gla~AN~laA~~a 215 (280)
T cd07945 155 FLSDLPIKRIMLPDTL-----G------ILSPFETYTYISDMVKRY----PNLHFDFHA----HNDYDLAVANVLAAVKA 215 (280)
T ss_pred HHHHcCCCEEEecCCC-----C------CCCHHHHHHHHHHHHhhC----CCCeEEEEe----CCCCCHHHHHHHHHHHh
Confidence 9999999999999986 3 334456666666665432 233222221 11223466777888899
Q ss_pred CCCEE
Q 012815 253 GADVL 257 (456)
Q Consensus 253 GAD~I 257 (456)
||+.|
T Consensus 216 Ga~~v 220 (280)
T cd07945 216 GIKGL 220 (280)
T ss_pred CCCEE
Confidence 99954
No 309
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=90.18 E-value=2.9 Score=38.03 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCC-CCCCHHHHHHHHHHHHhccCCcEEEe
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDT-GFISYGEMVDQGQLITQAVSIPVIGD 156 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~-~~lt~~Eml~~~r~I~ra~~iPVIaD 156 (456)
...+++++.. +..+...+++...++.+.+.|+|.+.++..--+ ...+.. ...+ +...+.+++..++||+++
T Consensus 85 ~~~~~~~~~~-~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~pv~a~ 156 (196)
T cd00564 85 VAEARALLGP-DLIIGVSTHSLEEALRAEELGADYVGFGPVFPT---PTKPGAGPPLG----LELLREIAELVEIPVVAI 156 (196)
T ss_pred HHHHHHHcCC-CCEEEeeCCCHHHHHHHhhcCCCEEEECCccCC---CCCCCCCCCCC----HHHHHHHHHhCCCCEEEE
Confidence 4456665543 355666778888888888899999998743111 111221 1222 233455555578999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCC
Q 012815 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (456)
Q Consensus 157 ~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~ 188 (456)
|+.. .++++.+.++|++|+.+-...
T Consensus 157 -----GGi~--~~~i~~~~~~Ga~~i~~g~~i 181 (196)
T cd00564 157 -----GGIT--PENAAEVLAAGADGVAVISAI 181 (196)
T ss_pred -----CCCC--HHHHHHHHHcCCCEEEEehHh
Confidence 3331 256778888999999886554
No 310
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.92 E-value=17 Score=33.92 Aligned_cols=140 Identities=16% Similarity=0.215 Sum_probs=78.8
Q ss_pred HHHHHHHHhc-cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHH
Q 012815 139 VDQGQLITQA-VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA 217 (456)
Q Consensus 139 l~~~r~I~ra-~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~A 217 (456)
+..++.+.+. .++|+++|.-.-... ...++.+.++|++++.+=+.. +.+...+-+++++
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~----~~~~~~~~~aGad~i~~h~~~--------------~~~~~~~~i~~~~-- 100 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAG----ALEAEMAFKAGADIVTVLGAA--------------PLSTIKKAVKAAK-- 100 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecccc----HHHHHHHHhcCCCEEEEEeeC--------------CHHHHHHHHHHHH--
Confidence 4456666654 479998885443221 123478889999999986542 1111222222222
Q ss_pred hHhhCCCeEEE-EecchhhcccHHHHHHHHHHhHhcCCCEEEe-cc--------CCCHHHHHHHHHhCCCCceeeeeecc
Q 012815 218 RKESGSDIVIV-ARTDSRQALSLEESLRRSRAFADAGADVLFI-DA--------LASKEEMKAFCEISPLVPKMANMLEG 287 (456)
Q Consensus 218 r~~~G~dfvIi-ARTDA~~~~~ldeAI~RakAy~eAGAD~Ifi-e~--------~~s~eei~~i~~~v~~vP~~~N~~~~ 287 (456)
+.|-.+.+. --... .+|. .+ +...|+|.+.+ ++ ....+.++++.+.. .+|+.+ .
T Consensus 101 --~~g~~~~v~~~~~~t-----~~e~---~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~----~ 164 (202)
T cd04726 101 --KYGKEVQVDLIGVED-----PEKR---AK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLL-GVKVAV----A 164 (202)
T ss_pred --HcCCeEEEEEeCCCC-----HHHH---HH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhc-CCCEEE----E
Confidence 224333321 12211 1222 23 66679999877 32 23456777776542 355432 3
Q ss_pred CCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 288 GGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 288 ~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
||-++ -+..++.+.|+..+..|..++.
T Consensus 165 GGI~~-~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 165 GGITP-DTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred CCcCH-HHHHHHHhcCCCEEEEeehhcC
Confidence 45443 4678889999999999987754
No 311
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=89.91 E-value=2.4 Score=42.40 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=60.0
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012815 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (456)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakA 248 (456)
..++.+..+|.+.|.|+-+ |. ..+.+++..-|+|+.. .+...+.|.-.... ...+.
T Consensus 31 ~~~e~~a~~G~D~v~iD~E-------Hg----~~~~~~~~~~i~a~~~------~g~~~lVRvp~~~~-------~~i~r 86 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGE-------HA----PNDVSTFIPQLMALKG------SASAPVVRVPTNEP-------VIIKR 86 (256)
T ss_pred HHHHHHHhcCCCEEEEccc-------cC----CCCHHHHHHHHHHHhh------cCCCcEEECCCCCH-------HHHHH
Confidence 3445677899999999666 54 3566777766666543 24566777644321 23455
Q ss_pred hHhcCCCEEEeccCCCHHHHHHHHHhCC
Q 012815 249 FADAGADVLFIDALASKEEMKAFCEISP 276 (456)
Q Consensus 249 y~eAGAD~Ifie~~~s~eei~~i~~~v~ 276 (456)
..++||+.|++|.+.+.|+++++++...
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~k 114 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVASTR 114 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHcC
Confidence 6799999999999999999999998644
No 312
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=89.83 E-value=6.5 Score=40.82 Aligned_cols=92 Identities=11% Similarity=0.224 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
++..+...++++.+.|...+||. + +++|++++++. |+++.+ +.|+.....+++|
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiK---------------v------~~~v~avre~~---G~~~~l--~vDaN~~w~~~~A 179 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQ---------------L------PKLFEAVREKF---GFEFHL--LHDVHHRLTPNQA 179 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeC---------------H------HHHHHHHHhcc---CCCceE--EEECCCCCCHHHH
Confidence 45667777888888899999981 1 56777776653 566655 4588877889999
Q ss_pred HHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCCCCceeee
Q 012815 243 LRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~N 283 (456)
++.++++.+. +..|+|-+ .+.+.++++.+..+ +|+...
T Consensus 180 ~~~~~~l~~~--~l~~iEeP~~~~d~~~~~~L~~~~~-~pia~g 220 (361)
T cd03322 180 ARFGKDVEPY--RLFWMEDPTPAENQEAFRLIRQHTA-TPLAVG 220 (361)
T ss_pred HHHHHHhhhc--CCCEEECCCCcccHHHHHHHHhcCC-CCEEec
Confidence 9999999876 56688864 35678888888876 776643
No 313
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.81 E-value=1 Score=49.30 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=57.3
Q ss_pred HHHHHHHHhC-CC--ceeecccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHH---HHHHHHHhccC
Q 012815 78 AKSLRQILEL-PG--VHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMV---DQGQLITQAVS 150 (456)
Q Consensus 78 a~~Lr~ll~~-~~--~lv~pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml---~~~r~I~ra~~ 150 (456)
.+.++++.+. +. .+.+=|+.++-.|+.+-++|+++|.+| |.+-.+...-..+.+.-.++-+. ..++...+..+
T Consensus 271 ~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g 350 (502)
T PRK07107 271 KRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETG 350 (502)
T ss_pred HHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcC
Confidence 3444444432 22 355667999999999999999999997 32211111122333322333333 33323333445
Q ss_pred --CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012815 151 --IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (456)
Q Consensus 151 --iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IE 185 (456)
+|||+|.---|+ ..-+|.+ .+||++|.|-
T Consensus 351 ~~~~viadgGir~~-----gdi~KAl-a~GA~~vm~G 381 (502)
T PRK07107 351 VYIPICSDGGIVYD-----YHMTLAL-AMGADFIMLG 381 (502)
T ss_pred CcceEEEcCCCCch-----hHHHHHH-HcCCCeeeeC
Confidence 999998543333 2333444 4899999883
No 314
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=89.62 E-value=4.8 Score=41.21 Aligned_cols=158 Identities=10% Similarity=0.063 Sum_probs=90.7
Q ss_pred HHHHHHHHhC-CcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q 012815 100 LSAKLVEKSG-FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (456)
Q Consensus 100 lSArl~e~aG-fdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~A 177 (456)
-.|+.++++| .|++=+- |.--. -|.++.+ .+.+.+.+.++.+.+.+++||++-+.--+ +..++.+.+..+.+.
T Consensus 109 ~~a~~~~~~g~ad~iElN~ScPn~---~~~~~~g-~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~-~~~~~a~~~~~~~~~ 183 (310)
T PRK02506 109 TILKKIQASDFNGLVELNLSCPNV---PGKPQIA-YDFETTEQILEEVFTYFTKPLGVKLPPYF-DIVHFDQAAAIFNKF 183 (310)
T ss_pred HHHHHHhhcCCCCEEEEECCCCCC---CCccccc-cCHHHHHHHHHHHHHhcCCccEEecCCCC-CHHHHHHHHHHhCcC
Confidence 3456667777 7877764 32211 1334432 35667777788888888999999887755 556677766666677
Q ss_pred CccEEEeCCC----------CC-C----C-CccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHH
Q 012815 178 GFAGIILEDQ----------VS-P----K-GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (456)
Q Consensus 178 GaaGI~IEDq----------~~-p----K-~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~lde 241 (456)
|++||+.=.. .. | + ..|-..|+.+.|.. .+.|..+ ++..++++-|+|=.--.. -
T Consensus 184 g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~a--l~~v~~~---~~~~~~~ipIig~GGI~s---~-- 253 (310)
T PRK02506 184 PLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTA--LANVRAF---YQRLNPSIQIIGTGGVKT---G-- 253 (310)
T ss_pred ceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHH--HHHHHHH---HHhcCCCCCEEEECCCCC---H--
Confidence 8887654321 00 1 1 12334566776664 3344333 222334566776543322 2
Q ss_pred HHHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHh
Q 012815 242 SLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEI 274 (456)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~ 274 (456)
+.+..|..||||+|.+=+. ...+.+.++.++
T Consensus 254 --~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~ 287 (310)
T PRK02506 254 --RDAFEHILCGASMVQVGTALHKEGPAVFERLTKE 287 (310)
T ss_pred --HHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHH
Confidence 3455567899999876431 233445555544
No 315
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=89.62 E-value=1.7 Score=44.46 Aligned_cols=125 Identities=16% Similarity=0.186 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCccEEE---eCCCCCCCCccCCCCcccc-CHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 167 VKRTVKGYIKAGFAGII---LEDQVSPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~---IEDq~~pK~CGH~~gk~lv-p~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
.+...|....+|-...| +-|.+..|.. |.. +. +.+.+.+.|+++++. .++..|.-=.+ .
T Consensus 136 ~R~l~k~AV~~GGg~~HR~gLsd~vLikdN-Hi~---~~g~~~~i~~av~~~r~~----~~~~kIeVEv~---------t 198 (284)
T PRK06096 136 TRLLATQAVLAAGGLIHRAGCAETILLFAN-HRH---FLHDPQDWSGAINQLRRH----APEKKIVVEAD---------T 198 (284)
T ss_pred hhHHHHHHHHcCCCcCccCCcchhhhhHHH-HHH---HhCCcccHHHHHHHHHHh----CCCCCEEEECC---------C
Confidence 34555667788888888 7777655532 421 00 011222233333322 13333443333 2
Q ss_pred HHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCC-CceeeeeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
++.++.+.++|||.|.++... .+++++.++.++. -|... +-..||-+ .=+..++++.|+..++.+.
T Consensus 199 leqa~ea~~agaDiI~LDn~~-~e~l~~av~~~~~~~~~~~-leaSGGI~-~~ni~~yA~tGvD~Is~ga 265 (284)
T PRK06096 199 PKEAIAALRAQPDVLQLDKFS-PQQATEIAQIAPSLAPHCT-LSLAGGIN-LNTLKNYADCGIRLFITSA 265 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhhccCCCeE-EEEECCCC-HHHHHHHHhcCCCEEEECc
Confidence 567777889999999999764 5788888776421 02211 11223432 2456889999999998865
No 316
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=89.56 E-value=11 Score=39.28 Aligned_cols=168 Identities=23% Similarity=0.277 Sum_probs=102.4
Q ss_pred eecccCChHHHHHH------HHhCCcEEEecchHHhhhhcccCC-CCCCCHH---HHHHHHHHHHhcc-CCcEEEeC---
Q 012815 92 QGPACFDALSAKLV------EKSGFSFCFTSGFSISAARLALPD-TGFISYG---EMVDQGQLITQAV-SIPVIGDG--- 157 (456)
Q Consensus 92 v~pgayDalSArl~------e~aGfdAI~vSG~avSas~lG~PD-~~~lt~~---Eml~~~r~I~ra~-~iPVIaD~--- 157 (456)
.|||.|=..--+++ .+.|.+++.+=|.. . . -| .+.-.++ =+...++.|.+.. ++-||+|.
T Consensus 49 smPg~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~---~-~--Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc 122 (323)
T PRK09283 49 SMPGVYRLSIDLLVKEAEEAVELGIPAVALFGVP---E-L--KDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLD 122 (323)
T ss_pred CCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCcC---C-C--CCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeecc
Confidence 57777654433333 34699988875541 1 1 12 1222222 2456677777775 58888885
Q ss_pred ---CCCC------C---CHHHH---HHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhC
Q 012815 158 ---DNGY------G---NAMNV---KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (456)
Q Consensus 158 ---DtGY------G---~~~nv---~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G 222 (456)
++|+ | |.+.+ .+.+-.+.+|||+-|-=-|- ++| ||.|++++-++.|
T Consensus 123 ~YT~hGHcGil~~g~idND~Tl~~L~~~Al~~A~AGaDiVAPSdM--------MDG-----------rV~aIR~aLd~~g 183 (323)
T PRK09283 123 EYTSHGHCGILEDGYVDNDETLELLAKQALSQAEAGADIVAPSDM--------MDG-----------RVGAIREALDEAG 183 (323)
T ss_pred CCCCCCceecccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccc--------ccc-----------HHHHHHHHHHHCC
Confidence 3342 2 33333 34445566899987765543 333 4455555444433
Q ss_pred -CCeEEEEecchhh--------------------------cccHHHHHHHHHHhHhcCCCEEEe-ccCCCHHHHHHHHHh
Q 012815 223 -SDIVIVARTDSRQ--------------------------ALSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFCEI 274 (456)
Q Consensus 223 -~dfvIiARTDA~~--------------------------~~~ldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i~~~ 274 (456)
.+.-|.+-+--++ ...-.|||+.+..=.+-|||+|+| |+++..+.++++.+.
T Consensus 184 ~~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~ 263 (323)
T PRK09283 184 FTDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKPALPYLDIIRRVKDE 263 (323)
T ss_pred CCCCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHHhc
Confidence 2556665543321 012679999999999999999999 789999999999998
Q ss_pred CCCCceeeeee
Q 012815 275 SPLVPKMANML 285 (456)
Q Consensus 275 v~~vP~~~N~~ 285 (456)
++ +|+.+=.+
T Consensus 264 ~~-~PvaaYqV 273 (323)
T PRK09283 264 FN-LPVAAYQV 273 (323)
T ss_pred CC-CCEEEEEc
Confidence 87 78765433
No 317
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=89.55 E-value=2.5 Score=44.69 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=59.8
Q ss_pred HHHHHHhC-CCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc--CCcEEEe
Q 012815 80 SLRQILEL-PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGD 156 (456)
Q Consensus 80 ~Lr~ll~~-~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~--~iPVIaD 156 (456)
.++.+.+. +.|+++=|+-+.-.|+.+.++|+++|.+|+.+-- .-|....+++.+ ..|++++ .+||++|
T Consensus 219 ~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGr-----q~~~~~a~~~~L----~ei~~av~~~i~vi~d 289 (367)
T TIGR02708 219 DIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGR-----QLDGGPAAFDSL----QEVAEAVDKRVPIVFD 289 (367)
T ss_pred HHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCcc-----CCCCCCcHHHHH----HHHHHHhCCCCcEEee
Confidence 34444332 4588888999999999999999999999976621 124444444443 3333444 4999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCC
Q 012815 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILED 186 (456)
Q Consensus 157 ~DtGYG~~~nv~rtVk~l~~AGaaGI~IED 186 (456)
. +..+-...+|.+. .||.+|-|--
T Consensus 290 G-----GIr~g~Dv~KaLa-lGAd~V~igR 313 (367)
T TIGR02708 290 S-----GVRRGQHVFKALA-SGADLVALGR 313 (367)
T ss_pred C-----CcCCHHHHHHHHH-cCCCEEEEcH
Confidence 4 3322333344555 8999998843
No 318
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=89.52 E-value=6.9 Score=38.68 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=75.3
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCC
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~D 158 (456)
+.|-+..+.++++.|.-|-..--+..+.++|||.|.++= .||-+....+.+.-+..++.+++ .+.|||+-
T Consensus 117 ~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTL-------sGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAE-- 186 (229)
T COG3010 117 EELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTL-------SGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAE-- 186 (229)
T ss_pred HHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEeccc-------ccccCCCCCCCCCcHHHHHHHHh-CCCeEEee--
Confidence 344444667789999999999999999999999998762 13333222344444456666666 78999974
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHH
Q 012815 159 NGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (456)
Q Consensus 159 tGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~ 215 (456)
..|-+|+.+. +.++.||.+|.+-. .++.+++.+.+...+.
T Consensus 187 Gr~~tP~~Ak----~a~~~Ga~aVvVGs-------------AITRp~~It~~F~~~i 226 (229)
T COG3010 187 GRYNTPEQAK----KAIEIGADAVVVGS-------------AITRPEEITQWFVDAI 226 (229)
T ss_pred CCCCCHHHHH----HHHHhCCeEEEECc-------------ccCCHHHHHHHHHHHH
Confidence 4476776554 56678999998833 2556677777665544
No 319
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=89.46 E-value=7.1 Score=39.92 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=78.2
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE
Q 012815 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (456)
Q Consensus 150 ~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA 229 (456)
.+|+.+=++++ ....+.++++.+.|...+||-= |. -+.++-+++|++++++. |++..+
T Consensus 109 ~~~~~~~i~~~----~~~~~~a~~~~~~G~~~~KvKv-------G~------~~~~~d~~~v~air~~~---g~~~~l-- 166 (320)
T PRK02714 109 PLSYSALLPAG----EAALQQWQTLWQQGYRTFKWKI-------GV------DPLEQELKIFEQLLERL---PAGAKL-- 166 (320)
T ss_pred CCceeeecCCC----HHHHHHHHHHHHcCCCEEEEEE-------CC------CChHHHHHHHHHHHHhc---CCCCEE--
Confidence 46665544332 4566777888888999999821 21 13455678888887664 556555
Q ss_pred ecchhhcccHHHHHHHHHHhHhc-CCCEEEeccC---CCHHHHHHHHHhCCCCceeee
Q 012815 230 RTDSRQALSLEESLRRSRAFADA-GADVLFIDAL---ASKEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 230 RTDA~~~~~ldeAI~RakAy~eA-GAD~Ifie~~---~s~eei~~i~~~v~~vP~~~N 283 (456)
|.|+......++|++.++.+.+. +-+.-|+|-+ .+.+.++++.+..+ +|+.+.
T Consensus 167 ~vDaN~~w~~~~A~~~~~~l~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~-~Pia~D 223 (320)
T PRK02714 167 RLDANGGLSLEEAKRWLQLCDRRLSGKIEFIEQPLPPDQFDEMLQLSQDYQ-TPIALD 223 (320)
T ss_pred EEECCCCCCHHHHHHHHHHHhhccCCCccEEECCCCcccHHHHHHHHHhCC-CCEEEC
Confidence 67888778889999999998873 5578899875 25678888888776 777654
No 320
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=89.45 E-value=22 Score=34.73 Aligned_cols=146 Identities=22% Similarity=0.225 Sum_probs=82.7
Q ss_pred HHHHHhccCCcEEEeCCCCCCC-HHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHh
Q 012815 142 GQLITQAVSIPVIGDGDNGYGN-AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (456)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtGYG~-~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~ 220 (456)
++.+.+. +.++++|.=.. + +.++.+.++.+.++|++.+.+=-.. | .+.|++++++.++
T Consensus 46 i~~l~~~-~~~i~~D~Kl~--Di~~t~~~~i~~~~~~gad~itvH~~a---------g---------~~~i~~~~~~~~~ 104 (230)
T PRK00230 46 VRELKQR-GFKVFLDLKLH--DIPNTVAKAVRALAKLGVDMVNVHASG---------G---------PRMMKAAREALEP 104 (230)
T ss_pred HHHHHhc-CCCEEEEeehh--hccccHHHHHHHHHHcCCCEEEEcccC---------C---------HHHHHHHHHHhhc
Confidence 4455444 67899997764 3 2356778888899999999873321 1 2356667766543
Q ss_pred hC-C-CeEEEEecch---hh-----cccHHHHH-HHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCC
Q 012815 221 SG-S-DIVIVARTDS---RQ-----ALSLEESL-RRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGG 289 (456)
Q Consensus 221 ~G-~-dfvIiARTDA---~~-----~~~ldeAI-~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g 289 (456)
.+ + -+.|.--|.- .. ..++++.+ .+++...+.|+|.+..... +.+.+.+..+ +.+.-++ ||
T Consensus 105 ~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~----~~~~ir~~~~--~~~~~v~--pG 176 (230)
T PRK00230 105 KSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQ----EAAAIREATG--PDFLLVT--PG 176 (230)
T ss_pred cCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChH----HHHHHHhhcC--CceEEEc--CC
Confidence 21 1 1222223321 00 11234444 6677778999999987642 3333333332 1222222 23
Q ss_pred CCCC----------CCHHHHHhcCCCEEeccchHHHH
Q 012815 290 KTPI----------LNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 290 ~tp~----------lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
-.|. .++.+..+.|...+++|-..+.+
T Consensus 177 I~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a 213 (230)
T PRK00230 177 IRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQA 213 (230)
T ss_pred cCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCC
Confidence 3231 26788889999999998775543
No 321
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=89.18 E-value=13 Score=37.12 Aligned_cols=102 Identities=21% Similarity=0.193 Sum_probs=64.3
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEe--cchhhcccHHHHHHHH
Q 012815 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR--TDSRQALSLEESLRRS 246 (456)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiAR--TDA~~~~~ldeAI~Ra 246 (456)
+.++.+.++|+..|+|-.... ..|...+-=.+.++.+++++.+++..++.|....+.+= .|+. ....+..++.+
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~s---d~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~-~~~~~~~~~~~ 157 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSW---DLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGY-KANPEYALATL 157 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCC---HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccC-CCCHHHHHHHH
Confidence 456778889999999965432 12322111235678888888888777766643333211 1221 23567788999
Q ss_pred HHhHhcCCCEEEec---cCCCHHHHHHHHHh
Q 012815 247 RAFADAGADVLFID---ALASKEEMKAFCEI 274 (456)
Q Consensus 247 kAy~eAGAD~Ifie---~~~s~eei~~i~~~ 274 (456)
+++.++|+|.|.+. |.-+++++.++.+.
T Consensus 158 ~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~ 188 (273)
T cd07941 158 KAAAEAGADWLVLCDTNGGTLPHEIAEIVKE 188 (273)
T ss_pred HHHHhCCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999875 23455666655543
No 322
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=89.05 E-value=4.5 Score=41.48 Aligned_cols=102 Identities=14% Similarity=0.218 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccH
Q 012815 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (456)
Q Consensus 160 GYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~l 239 (456)
|.|++..+.+.++++ .|...+++- .|. -+.++-+++|++++++. +++. =|-|+......
T Consensus 112 ~~~~~~~~~~~a~~~--~Gf~~~KvK-------vG~------~~~~~d~~~i~~vr~~~----~~~~--l~vDaN~~w~~ 170 (322)
T PRK05105 112 CYGDPDELILKLADM--PGEKVAKVK-------VGL------YEAVRDGMLVNLLLEAI----PDLK--LRLDANRGWTL 170 (322)
T ss_pred ecCCHHHHHHHHHHc--CCCCEEEEE-------ECC------CCHHHHHHHHHHHHHhC----CCCe--EEEECCCCCCH
Confidence 456777677666666 688888873 222 13455678888887653 3433 37799887889
Q ss_pred HHHHHHHHHhHh-cCCCEEEeccC-CCHHHHHHHHHhCCCCceeee
Q 012815 240 EESLRRSRAFAD-AGADVLFIDAL-ASKEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 240 deAI~RakAy~e-AGAD~Ifie~~-~s~eei~~i~~~v~~vP~~~N 283 (456)
++|++.++++.+ .|.+.-|+|-+ ++.++++++.+..+ +|+.+.
T Consensus 171 ~~A~~~~~~l~~~~~~~i~~iEqP~~~~~~~~~l~~~~~-~PIa~D 215 (322)
T PRK05105 171 EKAQQFAKYVPPDYRHRIAFLEEPCKTPDDSRAFARATG-IAIAWD 215 (322)
T ss_pred HHHHHHHHHhhhhcCCCccEEECCCCCHHHHHHHHHhCC-CCEEEC
Confidence 999999999987 45678899875 55678888888776 676643
No 323
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=89.05 E-value=27 Score=35.14 Aligned_cols=191 Identities=19% Similarity=0.189 Sum_probs=101.7
Q ss_pred HHHHHHhCCCceeecccC-----ChH-----HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc
Q 012815 80 SLRQILELPGVHQGPACF-----DAL-----SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV 149 (456)
Q Consensus 80 ~Lr~ll~~~~~lv~pgay-----Dal-----SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~ 149 (456)
+|++.++++++++....+ |+. .+..+.+.+.++|-++-.. .| -+...-+..+..+.+..
T Consensus 1 ~~~~~l~~~~~~~s~E~~PPk~~~~~~~l~~~~~~l~~~~pd~vsVTd~~-----~~------~~~~~s~~~a~~l~~~~ 69 (287)
T PF02219_consen 1 KFQQKLKKGEFVVSFELFPPKGADGEEKLLEAAERLKDLGPDFVSVTDNP-----GG------SSRMMSLLAAAKLLKET 69 (287)
T ss_dssp --HHHHHTSS-EEEEEE---SSHHHHHHHHHHHHHHHTT--SEEEE---G-----CG------TTHHHHHHHHHHHHHHT
T ss_pred ChhHHHhCCCCEEEEEEeCCCCchHHHHHHHHHHHhcCCCCCEEEeecCC-----CC------cccCCcHHHHHHHHHHh
Confidence 477888888766544333 322 1222333456677666211 12 13344455666777777
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE-
Q 012815 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV- 228 (456)
Q Consensus 150 ~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi- 228 (456)
++++++=+-.=--|...+...+..+.++|+..|.+=-+..|+.-.| ..+++.+.....+-|+.+++.. +..|-|-
T Consensus 70 g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~-~~~~~~~~~~~~~Li~~i~~~~---~~~~~i~v 145 (287)
T PF02219_consen 70 GIEPIPHLTCRDRNREALQSDLLGAHALGIRNILALTGDPPKGGDH-FAKPVFDFDYALDLIRLIRQEY---GDDFSIGV 145 (287)
T ss_dssp T--EEEEEESTTSBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS-----TTS-SSHHHHHHHHHHHH---GGGSEEEE
T ss_pred CCceEEeecccCCCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCcc-ccCCCchhHHHHHHHHHHHHhc---Cccccccc
Confidence 8888876655323677888888899999999999877766654333 3344433332344444444322 2223332
Q ss_pred -Eecchh-hcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhC---C-CCceeeeee
Q 012815 229 -ARTDSR-QALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEIS---P-LVPKMANML 285 (456)
Q Consensus 229 -ARTDA~-~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v---~-~vP~~~N~~ 285 (456)
+--+.. ....++.-++|.++=.+||||.++---+-+.+.+.++.+.+ . .+|+++.++
T Consensus 146 a~~P~~hp~~~~~~~~~~~l~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~~~pIi~GI~ 208 (287)
T PF02219_consen 146 AGYPEGHPEAPDFEAELKRLKKKIDAGADFIITQPFFDAEAFERFLDRLREAGIDVPIIPGIM 208 (287)
T ss_dssp EE-TTHHTTCSSHHHHHHHHHHHHHTTESEEEEEE-SSHHHHHHHHHHHHHTTHTSEEEEEEE
T ss_pred ccCCCCCccccCHHHHHHHHHHHHHCCCCEEeccccCCHHHHHHHHHHHHHcCCCCcEEEEEe
Confidence 211111 23457888999999999999998877777777777776542 1 257766554
No 324
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=89.05 E-value=1.7 Score=44.57 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=84.8
Q ss_pred HHHHHHHHhCCcEEEecchHHhhhhccc-CCCCCCCHHHHHHHHHHHHhccC---CcEEEeCCC-CCCCHHHHHHHHHHH
Q 012815 100 LSAKLVEKSGFSFCFTSGFSISAARLAL-PDTGFISYGEMVDQGQLITQAVS---IPVIGDGDN-GYGNAMNVKRTVKGY 174 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG~avSas~lG~-PD~~~lt~~Eml~~~r~I~ra~~---iPVIaD~Dt-GYG~~~nv~rtVk~l 174 (456)
-+.+.++++|.-++-+==.... -..|+ |...+++.+||++.++++.++.. .-|++=.|. +-++...+.+-.+.|
T Consensus 97 rtV~~~~~aG~agi~iEDq~~p-k~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY 175 (289)
T COG2513 97 RTVRELEQAGAAGIHIEDQVGP-KRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAY 175 (289)
T ss_pred HHHHHHHHcCcceeeeeecccc-hhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHH
Confidence 4567788899888877522211 13455 77899999999999999998763 334454454 345555666667899
Q ss_pred HHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCC
Q 012815 175 IKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGA 254 (456)
Q Consensus 175 ~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGA 254 (456)
++|||++|..|.-. +. +.+.++..++. .++.+|--.... .. +-....++++|.
T Consensus 176 ~eAGAD~if~~al~--------------~~-e~i~~f~~av~------~pl~~N~t~~g~--tp----~~~~~~L~~~Gv 228 (289)
T COG2513 176 VEAGADAIFPEALT--------------DL-EEIRAFAEAVP------VPLPANITEFGK--TP----LLTVAELAELGV 228 (289)
T ss_pred HHcCCcEEccccCC--------------CH-HHHHHHHHhcC------CCeeeEeeccCC--CC----CcCHHHHHhcCc
Confidence 99999999998742 33 33344433332 234443221111 01 112467889999
Q ss_pred CEEEeccCC
Q 012815 255 DVLFIDALA 263 (456)
Q Consensus 255 D~Ifie~~~ 263 (456)
..|..+...
T Consensus 229 ~~V~~~~~~ 237 (289)
T COG2513 229 KRVSYGLTA 237 (289)
T ss_pred eEEEECcHH
Confidence 998876643
No 325
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=89.04 E-value=13 Score=38.88 Aligned_cols=150 Identities=19% Similarity=0.146 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhCccEEEeCCCC--------CC---CCccCCCCccccCHHHHHHHHHHHHHH-hHhhCCCeEEEEecchh
Q 012815 167 VKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVSREEAVMRIKAAVDA-RKESGSDIVIVARTDSR 234 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~--------~p---K~CGH~~gk~lvp~ee~v~kI~AA~~A-r~~~G~dfvIiARTDA~ 234 (456)
..+++++..+||++||.|--.- .| +|--.-+| +.|.-+.=+..++++ ++..|+++ |.-|--..
T Consensus 161 f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGG----slENR~Rf~~Eiv~aVr~~vg~~~-igvRis~~ 235 (362)
T PRK10605 161 FRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGG----SVENRARLVLEVVDAGIAEWGADR-IGIRISPL 235 (362)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCC----cHHHHHHHHHHHHHHHHHHcCCCe-EEEEECCc
Confidence 4556688889999999985332 12 22111122 122111111111111 22235665 66675332
Q ss_pred -------hcccHHH-HHHHHHHhHhcCCCEEEeccC------C-CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHH-
Q 012815 235 -------QALSLEE-SLRRSRAFADAGADVLFIDAL------A-SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE- 298 (456)
Q Consensus 235 -------~~~~lde-AI~RakAy~eAGAD~Ifie~~------~-s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~e- 298 (456)
....++| +++-++.+.++|.|.|=+-.. + ..+..+++.+.++ +|++++ ++.+|.. .++
T Consensus 236 ~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~-~pv~~~----G~~~~~~-ae~~ 309 (362)
T PRK10605 236 GTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFH-GVIIGA----GAYTAEK-AETL 309 (362)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCC-CCEEEe----CCCCHHH-HHHH
Confidence 1245788 899999999999999855431 1 2234455666666 565543 2333322 333
Q ss_pred HHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 012815 299 LEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (456)
Q Consensus 299 L~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~~g~ 332 (456)
|++=.+.+|.++-.++.-- +....+++|.
T Consensus 310 i~~G~~D~V~~gR~~iadP-----d~~~k~~~g~ 338 (362)
T PRK10605 310 IGKGLIDAVAFGRDYIANP-----DLVARLQRKA 338 (362)
T ss_pred HHcCCCCEEEECHHhhhCc-----cHHHHHhcCC
Confidence 3344488888876554432 4455566654
No 326
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=89.02 E-value=5.1 Score=42.73 Aligned_cols=99 Identities=17% Similarity=0.224 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
+++.+.+.++++.+.|..++||-- | .+.++-+++|++++++. |+++.+ +.|+....+.++|
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKv-------g-------~~~~~d~~~v~avRe~v---G~~~~L--~vDaN~~w~~~~A 256 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKV-------G-------ADLEDDIRRCRLAREVI---GPDNKL--MIDANQRWDVPEA 256 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC-------C-------CCHHHHHHHHHHHHHhc---CCCCeE--EEECCCCCCHHHH
Confidence 456677888888889999999931 2 13456678888887764 666655 4477777788999
Q ss_pred HHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCC--CCceee
Q 012815 243 LRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISP--LVPKMA 282 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~--~vP~~~ 282 (456)
++.++++.+.| .-|+|-+ .+.+.++++.+..+ .+|+..
T Consensus 257 ~~~~~~L~~~~--l~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~ 299 (415)
T cd03324 257 IEWVKQLAEFK--PWWIEEPTSPDDILGHAAIRKALAPLPIGVAT 299 (415)
T ss_pred HHHHHHhhccC--CCEEECCCCCCcHHHHHHHHHhcccCCCceec
Confidence 99999999875 5588864 35678888888763 366543
No 327
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=89.02 E-value=19 Score=35.64 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=79.7
Q ss_pred HHHHHHhCCcEEEec---chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012815 102 AKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (456)
Q Consensus 102 Arl~e~aGfdAI~vS---G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG 178 (456)
++.+.++|++.|=++ +.+-+....++|- .+-.|.+..++.... +..+.+=...|+++. +-+++..+.|
T Consensus 28 ~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~---~~~~e~i~~~~~~~~--~~~~~~~~~~~~~~~----~~i~~a~~~g 98 (263)
T cd07943 28 ARALDAAGVPLIEVGHGDGLGGSSLNYGFAA---HTDEEYLEAAAEALK--QAKLGVLLLPGIGTV----DDLKMAADLG 98 (263)
T ss_pred HHHHHHcCCCEEEeecCCCCCCcccccCCCC---CChHHHHHHHHHhcc--CCEEEEEecCCccCH----HHHHHHHHcC
Confidence 455677899988776 1110000112222 223344444433222 344444345666664 4456777889
Q ss_pred ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEE
Q 012815 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (456)
Q Consensus 179 aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~If 258 (456)
+..|.|-+... +. ..++.+++..++.|....++. +|+. ....++.++.+++..++|||.|.
T Consensus 99 ~~~iri~~~~s-------------~~----~~~~~~i~~ak~~G~~v~~~~-~~~~-~~~~~~~~~~~~~~~~~G~d~i~ 159 (263)
T cd07943 99 VDVVRVATHCT-------------EA----DVSEQHIGAARKLGMDVVGFL-MMSH-MASPEELAEQAKLMESYGADCVY 159 (263)
T ss_pred CCEEEEEechh-------------hH----HHHHHHHHHHHHCCCeEEEEE-Eecc-CCCHHHHHHHHHHHHHcCCCEEE
Confidence 99999966431 11 133334443444454333333 3332 23567888999999999999998
Q ss_pred ecc---CCCHHHHHHHHHh
Q 012815 259 IDA---LASKEEMKAFCEI 274 (456)
Q Consensus 259 ie~---~~s~eei~~i~~~ 274 (456)
+.- .-.++++.++.+.
T Consensus 160 l~DT~G~~~P~~v~~lv~~ 178 (263)
T cd07943 160 VTDSAGAMLPDDVRERVRA 178 (263)
T ss_pred EcCCCCCcCHHHHHHHHHH
Confidence 852 3456666666654
No 328
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=89.00 E-value=0.95 Score=42.66 Aligned_cols=64 Identities=22% Similarity=0.286 Sum_probs=41.0
Q ss_pred HHHHhHhcCCCEEEeccCCCHHHHHHHHH---hCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchH
Q 012815 245 RSRAFADAGADVLFIDALASKEEMKAFCE---ISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (456)
Q Consensus 245 RakAy~eAGAD~Ifie~~~s~eei~~i~~---~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~l 313 (456)
.+..+.++|+|.|.++... .++++++++ +.++- +.+ ...||-+ .-+..++++.|+..++.+...
T Consensus 92 e~~ea~~~g~d~I~lD~~~-~~~~~~~v~~l~~~~~~-v~i--e~SGGI~-~~ni~~ya~~gvD~isvg~~~ 158 (169)
T PF01729_consen 92 EAEEALEAGADIIMLDNMS-PEDLKEAVEELRELNPR-VKI--EASGGIT-LENIAEYAKTGVDVISVGSLT 158 (169)
T ss_dssp HHHHHHHTT-SEEEEES-C-HHHHHHHHHHHHHHTTT-SEE--EEESSSS-TTTHHHHHHTT-SEEEECHHH
T ss_pred HHHHHHHhCCCEEEecCcC-HHHHHHHHHHHhhcCCc-EEE--EEECCCC-HHHHHHHHhcCCCEEEcChhh
Confidence 3455677999999999874 478888887 43321 111 2223433 357899999999999987644
No 329
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=88.97 E-value=14 Score=38.20 Aligned_cols=86 Identities=20% Similarity=0.048 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCcEEEec---chHHhhhh----cccCCCCCCCHH----HHHHHHHHHHhccC--CcEE-----EeCCCCC
Q 012815 100 LSAKLVEKSGFSFCFTS---GFSISAAR----LALPDTGFISYG----EMVDQGQLITQAVS--IPVI-----GDGDNGY 161 (456)
Q Consensus 100 lSArl~e~aGfdAI~vS---G~avSas~----lG~PD~~~lt~~----Eml~~~r~I~ra~~--iPVI-----aD~DtGY 161 (456)
-.|+.+.++|||+|-+- ||-++... .=..|.--=+++ ..++.+++|+++++ .||. .|...|.
T Consensus 141 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g 220 (353)
T cd02930 141 RCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGG 220 (353)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCC
Confidence 47788888999999885 23322110 112231111333 34556677777764 5564 4654442
Q ss_pred CCHHHHHHHHHHHHHhCccEEEeC
Q 012815 162 GNAMNVKRTVKGYIKAGFAGIILE 185 (456)
Q Consensus 162 G~~~nv~rtVk~l~~AGaaGI~IE 185 (456)
-+.+...+.++.++++|++-|++-
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC
Confidence 245678899999999999999983
No 330
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=88.85 E-value=24 Score=35.85 Aligned_cols=134 Identities=15% Similarity=0.067 Sum_probs=80.1
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhc---cCCcEE------EeCCC-CCCCHHHHHHHH
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQA---VSIPVI------GDGDN-GYGNAMNVKRTV 171 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra---~~iPVI------aD~Dt-GYG~~~nv~rtV 171 (456)
-..+-++|.+.+-+.- .+|-. + .-.....+.+|.++.++.+.+. .++.+. ...+. |.-++..+.+.+
T Consensus 85 ie~A~~~g~~~v~i~~-~~s~~-~-~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 161 (287)
T PRK05692 85 LEAALAAGADEVAVFA-SASEA-F-SQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVA 161 (287)
T ss_pred HHHHHHcCCCEEEEEE-ecCHH-H-HHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHH
Confidence 3555678999776651 11111 1 1111236788877766655443 345553 23333 334677899999
Q ss_pred HHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHh
Q 012815 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD 251 (456)
Q Consensus 172 k~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~e 251 (456)
+.+.++|+..|.|-|.. |. ..+++..+.+++.++.... .++-+=...| +--++.-+.+..+
T Consensus 162 ~~~~~~G~d~i~l~DT~-----G~------~~P~~v~~lv~~l~~~~~~--~~i~~H~Hn~------~Gla~AN~laA~~ 222 (287)
T PRK05692 162 ERLFALGCYEISLGDTI-----GV------GTPGQVRAVLEAVLAEFPA--ERLAGHFHDT------YGQALANIYASLE 222 (287)
T ss_pred HHHHHcCCcEEEecccc-----Cc------cCHHHHHHHHHHHHHhCCC--CeEEEEecCC------CCcHHHHHHHHHH
Confidence 99999999999999986 32 3456677777777654321 1222222222 2235666777789
Q ss_pred cCCCEE
Q 012815 252 AGADVL 257 (456)
Q Consensus 252 AGAD~I 257 (456)
+|||.|
T Consensus 223 aG~~~i 228 (287)
T PRK05692 223 EGITVF 228 (287)
T ss_pred hCCCEE
Confidence 999975
No 331
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=88.84 E-value=5.1 Score=39.09 Aligned_cols=171 Identities=20% Similarity=0.314 Sum_probs=98.0
Q ss_pred HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 101 SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
.|+..++.|++-+++-=+-- +..| .......++.|++.+.+||.+|. |.-+ .+.++++.++||.
T Consensus 34 ~a~~~~~~g~~~l~ivDLda--a~~g--------~~~n~~~i~~i~~~~~~~i~vgG--GIrs----~ed~~~ll~~Ga~ 97 (229)
T PF00977_consen 34 VAKAFNEQGADELHIVDLDA--AKEG--------RGSNLELIKEIAKETGIPIQVGG--GIRS----IEDAERLLDAGAD 97 (229)
T ss_dssp HHHHHHHTT-SEEEEEEHHH--HCCT--------HHHHHHHHHHHHHHSSSEEEEES--SE-S----HHHHHHHHHTT-S
T ss_pred HHHHHHHcCCCEEEEEEccC--cccC--------chhHHHHHHHHHhcCCccEEEeC--ccCc----HHHHHHHHHhCCC
Confidence 45666788999999985431 1223 33566788899999999999982 2323 4455688889999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE---Eecc------hh---hcccHHHHHHHHHH
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV---ARTD------SR---QALSLEESLRRSRA 248 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi---ARTD------A~---~~~~ldeAI~RakA 248 (456)
-|.|--.. +.++ ++++++.... |.+-+++ +|-. .- ....+.|. ++.
T Consensus 98 ~Vvigt~~------------~~~~-~~l~~~~~~~------g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~---~~~ 155 (229)
T PF00977_consen 98 RVVIGTEA------------LEDP-ELLEELAERY------GSQRIVVSLDARDGYKVATNGWQESSGIDLEEF---AKR 155 (229)
T ss_dssp EEEESHHH------------HHCC-HHHHHHHHHH------GGGGEEEEEEEEETEEEEETTTTEEEEEEHHHH---HHH
T ss_pred EEEeChHH------------hhch-hHHHHHHHHc------CcccEEEEEEeeeceEEEecCccccCCcCHHHH---HHH
Confidence 88772211 2122 3444443322 2211211 1221 10 11234444 455
Q ss_pred hHhcCCCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012815 249 FADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (456)
Q Consensus 249 y~eAGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll 314 (456)
+.+.|+.-+++-.+ ++.+.++++++.+. +|+.+ .||-...-...+|++.|+.-|+.+..++
T Consensus 156 ~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~-~~via----sGGv~~~~Dl~~l~~~G~~gvivg~al~ 224 (229)
T PF00977_consen 156 LEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAVN-IPVIA----SGGVRSLEDLRELKKAGIDGVIVGSALH 224 (229)
T ss_dssp HHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHHS-SEEEE----ESS--SHHHHHHHHHTTECEEEESHHHH
T ss_pred HHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHcC-CCEEE----ecCCCCHHHHHHHHHCCCcEEEEehHhh
Confidence 66778998877543 46778888988875 66653 3453322346788899999999988765
No 332
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=88.72 E-value=5.9 Score=39.97 Aligned_cols=175 Identities=21% Similarity=0.290 Sum_probs=99.4
Q ss_pred HHHHHhCCcEEEecchHHhhhhcccCCC------------CCCCHHHHHHHHHHHH-hccCCcEEEeCCCCCCCHH---H
Q 012815 103 KLVEKSGFSFCFTSGFSISAARLALPDT------------GFISYGEMVDQGQLIT-QAVSIPVIGDGDNGYGNAM---N 166 (456)
Q Consensus 103 rl~e~aGfdAI~vSG~avSas~lG~PD~------------~~lt~~Eml~~~r~I~-ra~~iPVIaD~DtGYG~~~---n 166 (456)
+.++++|+|.|=++ .-.| -.+.|+ ..+++++.++.++.|. +..++|++. .+|-|+. .
T Consensus 31 ~~l~~~GaD~iEiG-iPfS---DP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivl---m~Y~N~i~~~G 103 (259)
T PF00290_consen 31 KALEEAGADIIEIG-IPFS---DPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVL---MTYYNPIFQYG 103 (259)
T ss_dssp HHHHHTTBSSEEEE---SS---SCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEE---EE-HHHHHHH-
T ss_pred HHHHHcCCCEEEEC-CCCC---CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEE---EeeccHHhccc
Confidence 44567799888776 1111 123332 2468889999999999 777899987 4677752 2
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCC-eEEEEecchhhcccHHHHHHH
Q 012815 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD-IVIVARTDSRQALSLEESLRR 245 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~d-fvIiARTDA~~~~~ldeAI~R 245 (456)
+.+-++++.++|++|+.|=|= |.||.. .++.+.+ +.|-+ ..+++-|-. -+|
T Consensus 104 ~e~F~~~~~~aGvdGlIipDL---------------P~ee~~-~~~~~~~---~~gl~~I~lv~p~t~---------~~R 155 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDL---------------PPEESE-ELREAAK---KHGLDLIPLVAPTTP---------EER 155 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTS---------------BGGGHH-HHHHHHH---HTT-EEEEEEETTS----------HHH
T ss_pred hHHHHHHHHHcCCCEEEEcCC---------------ChHHHH-HHHHHHH---HcCCeEEEEECCCCC---------HHH
Confidence 556778888999999999884 233332 3332222 22333 334444322 167
Q ss_pred HHHhHhcCCCEEEeccC------CC--HHHHHHHHH---hCCCCceeeeeeccCCCCCCCCHHHHHh--cCCCEEeccch
Q 012815 246 SRAFADAGADVLFIDAL------AS--KEEMKAFCE---ISPLVPKMANMLEGGGKTPILNPLELEE--LGFKLVAYPLS 312 (456)
Q Consensus 246 akAy~eAGAD~Ifie~~------~s--~eei~~i~~---~v~~vP~~~N~~~~~g~tp~lt~~eL~e--lGv~~Vs~p~~ 312 (456)
.+.+.+.+-..||+-+. .+ ..++.++.+ ....+|+.+- +|- -+.++.++ .|..-|+.|+.
T Consensus 156 i~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vG---FGI----~~~e~~~~~~~~aDGvIVGSa 228 (259)
T PF00290_consen 156 IKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVG---FGI----STPEQAKKLAAGADGVIVGSA 228 (259)
T ss_dssp HHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEE---SSS-----SHHHHHHHHTTSSEEEESHH
T ss_pred HHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEe---cCC----CCHHHHHHHHccCCEEEECHH
Confidence 77888777788887432 11 223333332 2333666542 222 24444443 79999999998
Q ss_pred HHHHHHH
Q 012815 313 LIGVSVR 319 (456)
Q Consensus 313 ll~aa~~ 319 (456)
+++....
T Consensus 229 ~v~~i~~ 235 (259)
T PF00290_consen 229 FVKIIEE 235 (259)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
No 333
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=88.72 E-value=19 Score=37.47 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=78.1
Q ss_pred HHHHHHhCCcEEEec-chHH--hhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012815 102 AKLVEKSGFSFCFTS-GFSI--SAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (456)
Q Consensus 102 Arl~e~aGfdAI~vS-G~av--Sas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG 178 (456)
++.++++|++.|=++ |-++ +....|.|- .+-.|.+..+..... +..+.+=+.-|.|+. +-++...++|
T Consensus 30 a~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~---~~~~e~i~~~~~~~~--~~~~~~ll~pg~~~~----~dl~~a~~~g 100 (333)
T TIGR03217 30 AAALDEAGVDAIEVTHGDGLGGSSFNYGFSA---HTDLEYIEAAADVVK--RAKVAVLLLPGIGTV----HDLKAAYDAG 100 (333)
T ss_pred HHHHHHcCCCEEEEecCCCCCCccccCCCCC---CChHHHHHHHHHhCC--CCEEEEEeccCccCH----HHHHHHHHCC
Confidence 455778999999886 2222 111234443 222233333322222 233433334566664 3457778899
Q ss_pred ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEE
Q 012815 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (456)
Q Consensus 179 aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~If 258 (456)
+..|.|-.. |. ..+...+-|+.+ ++.|....++. .++. ....++.++.++...++|||+|+
T Consensus 101 vd~iri~~~-----~~--------e~d~~~~~i~~a----k~~G~~v~~~l-~~s~-~~~~e~l~~~a~~~~~~Ga~~i~ 161 (333)
T TIGR03217 101 ARTVRVATH-----CT--------EADVSEQHIGMA----RELGMDTVGFL-MMSH-MTPPEKLAEQAKLMESYGADCVY 161 (333)
T ss_pred CCEEEEEec-----cc--------hHHHHHHHHHHH----HHcCCeEEEEE-Eccc-CCCHHHHHHHHHHHHhcCCCEEE
Confidence 999998553 21 112222222222 33353333222 2332 34568889999999999999998
Q ss_pred ecc---CCCHHHHHHHHHh
Q 012815 259 IDA---LASKEEMKAFCEI 274 (456)
Q Consensus 259 ie~---~~s~eei~~i~~~ 274 (456)
+-- .-.++++.++.+.
T Consensus 162 i~DT~G~~~P~~v~~~v~~ 180 (333)
T TIGR03217 162 IVDSAGAMLPDDVRDRVRA 180 (333)
T ss_pred EccCCCCCCHHHHHHHHHH
Confidence 852 3455666665544
No 334
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=88.70 E-value=3.6 Score=39.38 Aligned_cols=92 Identities=21% Similarity=0.242 Sum_probs=57.4
Q ss_pred HHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCC
Q 012815 84 ILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN 163 (456)
Q Consensus 84 ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~ 163 (456)
.+...+..+++.+++.-.++.+++.|.+.+++.+... -|........ .+..++++.+.+++||++.. |...
T Consensus 97 ~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~----~G~~~~~~~~---~~~~i~~i~~~~~~Pvi~~G--GI~~ 167 (236)
T cd04730 97 RLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEA----GGHRGTFDIG---TFALVPEVRDAVDIPVIAAG--GIAD 167 (236)
T ss_pred HHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCC----CCCCCccccC---HHHHHHHHHHHhCCCEEEEC--CCCC
Confidence 3333345567788888888888889999998765421 1222211112 24455666666789999863 3434
Q ss_pred HHHHHHHHHHHHHhCccEEEeCCCC
Q 012815 164 AMNVKRTVKGYIKAGFAGIILEDQV 188 (456)
Q Consensus 164 ~~nv~rtVk~l~~AGaaGI~IEDq~ 188 (456)
++++ +++.++|++||.+--..
T Consensus 168 ~~~v----~~~l~~GadgV~vgS~l 188 (236)
T cd04730 168 GRGI----AAALALGADGVQMGTRF 188 (236)
T ss_pred HHHH----HHHHHcCCcEEEEchhh
Confidence 4444 45556899999995543
No 335
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=88.67 E-value=0.76 Score=50.28 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=47.9
Q ss_pred HHHHHHHHHhHhcCCCEEEeccCCC-----HHHHHHHHHhCCCCceee-eeeccCCCCCCCCHHHHHhcCCCEEecc
Q 012815 240 EESLRRSRAFADAGADVLFIDALAS-----KEEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYP 310 (456)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~~s-----~eei~~i~~~v~~vP~~~-N~~~~~g~tp~lt~~eL~elGv~~Vs~p 310 (456)
++..+|+++..+||+|+|+++..+. .+.++++.+.+|.+++++ |+.- .-....+.++|+..|..+
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t------~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVT------MYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCC------HHHHHHHHHcCcCEEEEC
Confidence 5678999999999999999987532 257888888877666643 4321 113577999999999664
No 336
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=88.61 E-value=17 Score=37.45 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=85.5
Q ss_pred HHHHHHHhCCcEEEec-chHHhhh-hcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCC---HHHHHHHHHHHH
Q 012815 101 SAKLVEKSGFSFCFTS-GFSISAA-RLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN---AMNVKRTVKGYI 175 (456)
Q Consensus 101 SArl~e~aGfdAI~vS-G~avSas-~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~---~~nv~rtVk~l~ 175 (456)
.|+++++.||++|=+= |--.... .-|+=..-+-..+.+.+.++.+.+++++||++=+-.|+-+ ..+..+.++.++
T Consensus 72 aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~ 151 (318)
T TIGR00742 72 CAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVS 151 (318)
T ss_pred HHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHH
Confidence 3566667788877543 2111100 0111111223455566677788888899999999888743 256778889999
Q ss_pred HhCccEEEeCCCCCCCCccCCCCc-cccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCC
Q 012815 176 KAGFAGIILEDQVSPKGCGHTRGR-KVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGA 254 (456)
Q Consensus 176 ~AGaaGI~IEDq~~pK~CGH~~gk-~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGA 254 (456)
++|++.|.|...+.- .-|..+.. .-.+.-. -+.|++++++. +++-|++--|-... +++.+ +.+ ||
T Consensus 152 ~~G~~~itvHgRt~~-~qg~sg~~~~~~~~~~-~~~i~~vk~~~----~~ipVi~NGdI~s~---~da~~----~l~-g~ 217 (318)
T TIGR00742 152 GKGCQNFIVHARKAW-LSGLSPKENREIPPLR-YERVYQLKKDF----PHLTIEINGGIKNS---EQIKQ----HLS-HV 217 (318)
T ss_pred HcCCCEEEEeCCchh-hcCCCccccccCCchh-HHHHHHHHHhC----CCCcEEEECCcCCH---HHHHH----HHh-CC
Confidence 999999999876410 11222110 0111111 12233333322 24556665555432 33222 333 89
Q ss_pred CEEEec--cCCCHHHHHHHHH
Q 012815 255 DVLFID--ALASKEEMKAFCE 273 (456)
Q Consensus 255 D~Ifie--~~~s~eei~~i~~ 273 (456)
|+|+|- .+.++-.+.++.+
T Consensus 218 dgVMigRgal~nP~if~~~~~ 238 (318)
T TIGR00742 218 DGVMVGREAYENPYLLANVDR 238 (318)
T ss_pred CEEEECHHHHhCCHHHHHHHH
Confidence 999984 2344445555544
No 337
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.58 E-value=2.2 Score=43.82 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=44.9
Q ss_pred HHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 244 RRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
+.++.++++|||.|+++... ++++++.++.++. ...+ -..||- ..-+..++++.|+..++.+.
T Consensus 208 eea~~a~~agaDiImLDnms-pe~l~~av~~~~~-~~~l--eaSGGI-~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 208 AAAEEAAAAGADIIMLDNMS-LEQIEQAITLIAG-RSRI--ECSGNI-DMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhcC-ceEE--EEECCC-CHHHHHHHHhcCCCEEEeCc
Confidence 45666778999999999874 5799988887653 2221 122333 22457899999999999876
No 338
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=88.55 E-value=8.9 Score=41.84 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=42.5
Q ss_pred HHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 103 rl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
..+.++|.++|.+-. .+|+| .-+++.++.|.... ++|||+ |++.. .+.++.++++||++
T Consensus 231 ~~Lv~aGVd~i~~D~------a~g~~-------~~~~~~i~~i~~~~~~~~vi~----g~~~t---~~~~~~l~~~G~d~ 290 (475)
T TIGR01303 231 KALLDAGVDVLVIDT------AHGHQ-------VKMISAIKAVRALDLGVPIVA----GNVVS---AEGVRDLLEAGANI 290 (475)
T ss_pred HHHHHhCCCEEEEeC------CCCCc-------HHHHHHHHHHHHHCCCCeEEE----eccCC---HHHHHHHHHhCCCE
Confidence 334445777766542 13555 44556667776654 799999 44432 56667888999999
Q ss_pred EEeCCC
Q 012815 182 IILEDQ 187 (456)
Q Consensus 182 I~IEDq 187 (456)
|++--+
T Consensus 291 i~vg~g 296 (475)
T TIGR01303 291 IKVGVG 296 (475)
T ss_pred EEECCc
Confidence 997554
No 339
>PLN02535 glycolate oxidase
Probab=88.48 E-value=2.2 Score=45.01 Aligned_cols=93 Identities=18% Similarity=0.120 Sum_probs=62.0
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc--CCcEEE
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIG 155 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~--~iPVIa 155 (456)
-+.+|+.. +.|+++-|+-+.-.|+.+.++|+|+|.+|+.+- ...|.+..+++ ....+.+++ ++|||+
T Consensus 215 i~~lr~~~--~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GG-----r~~d~~~~t~~----~L~ev~~av~~~ipVi~ 283 (364)
T PLN02535 215 IEWLRSIT--NLPILIKGVLTREDAIKAVEVGVAGIIVSNHGA-----RQLDYSPATIS----VLEEVVQAVGGRVPVLL 283 (364)
T ss_pred HHHHHhcc--CCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCc-----CCCCCChHHHH----HHHHHHHHHhcCCCEEe
Confidence 44455532 468999999999999999999999999997651 12354433333 333444443 599998
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCC
Q 012815 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQ 187 (456)
Q Consensus 156 D~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq 187 (456)
|. |..+..++. +....||.+|.|---
T Consensus 284 dG--GIr~g~Dv~----KALalGA~aV~vGr~ 309 (364)
T PLN02535 284 DG--GVRRGTDVF----KALALGAQAVLVGRP 309 (364)
T ss_pred eC--CCCCHHHHH----HHHHcCCCEEEECHH
Confidence 73 444444444 455589999999554
No 340
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=88.47 E-value=4.3 Score=44.35 Aligned_cols=117 Identities=22% Similarity=0.235 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHH
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~R 245 (456)
+..+.++.++++|+.-|+| |-. -||.. ...+.|+.+++.- ++..|+|-+=.. .+.
T Consensus 241 ~~~~~~~~l~~ag~d~i~i-d~a----~G~s~--------~~~~~i~~ik~~~----~~~~v~aG~V~t--------~~~ 295 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVV-DSS----QGNSI--------YQIDMIKKLKSNY----PHVDIIAGNVVT--------ADQ 295 (495)
T ss_pred HHHHHHHHHHHCCCCEEEE-ecC----CCCch--------HHHHHHHHHHhhC----CCceEEECCcCC--------HHH
Confidence 4577888999999999999 432 25542 1233444444432 467777743222 356
Q ss_pred HHHhHhcCCCEEEec---c------------CCCH---HHHHHHHHhCCCCceeeeeeccCC-CCCCCCHHHHHhcCCCE
Q 012815 246 SRAFADAGADVLFID---A------------LASK---EEMKAFCEISPLVPKMANMLEGGG-KTPILNPLELEELGFKL 306 (456)
Q Consensus 246 akAy~eAGAD~Ifie---~------------~~s~---eei~~i~~~v~~vP~~~N~~~~~g-~tp~lt~~eL~elGv~~ 306 (456)
++.+.+||||.|.+- + .|.. .++.++++... +|++. .|| ++| -.....-++|...
T Consensus 296 a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~-v~vIa----dGGi~~~-~di~kAla~GA~~ 369 (495)
T PTZ00314 296 AKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERG-VPCIA----DGGIKNS-GDICKALALGADC 369 (495)
T ss_pred HHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcC-CeEEe----cCCCCCH-HHHHHHHHcCCCE
Confidence 778889999999752 1 2322 24445555544 56543 234 222 1223344589998
Q ss_pred EeccchH
Q 012815 307 VAYPLSL 313 (456)
Q Consensus 307 Vs~p~~l 313 (456)
|..|..+
T Consensus 370 Vm~G~~~ 376 (495)
T PTZ00314 370 VMLGSLL 376 (495)
T ss_pred EEECchh
Confidence 8888753
No 341
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=88.43 E-value=2.5 Score=45.89 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=60.3
Q ss_pred HHHHHHhC--CCceeecccCChHHHHHHHHhCCcEEEecchHHhh-hhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEe
Q 012815 80 SLRQILEL--PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-ARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (456)
Q Consensus 80 ~Lr~ll~~--~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSa-s~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD 156 (456)
.++.+.+. +-++++-++-++-.|+.+.++|+++|-++...-+. ...-..+.+ ++--+.+..++..++..++|||+|
T Consensus 259 ~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g-~p~~~~~~~~~~~~~~~~~~viad 337 (486)
T PRK05567 259 RVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVG-VPQITAIADAAEAAKKYGIPVIAD 337 (486)
T ss_pred HHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCC-cCHHHHHHHHHHHhccCCCeEEEc
Confidence 34444433 34678889999999999999999999876211110 001111112 333345555555555668999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012815 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (456)
Q Consensus 157 ~DtGYG~~~nv~rtVk~l~~AGaaGI~IE 185 (456)
. |+-++.++. | ...+||++|.+-
T Consensus 338 G--Gi~~~~di~---k-Ala~GA~~v~~G 360 (486)
T PRK05567 338 G--GIRYSGDIA---K-ALAAGASAVMLG 360 (486)
T ss_pred C--CCCCHHHHH---H-HHHhCCCEEEEC
Confidence 3 344454444 3 334799999983
No 342
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=88.43 E-value=3.9 Score=42.74 Aligned_cols=95 Identities=17% Similarity=0.038 Sum_probs=60.0
Q ss_pred HHHHHHHh-CCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc--CCcEEE
Q 012815 79 KSLRQILE-LPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIG 155 (456)
Q Consensus 79 ~~Lr~ll~-~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~--~iPVIa 155 (456)
+.++.+.+ .+.|+++-++-+.-.|+.+.++|+++|.+|+.+ . . ..|.. .+.-+.+..++.....+ .+|||+
T Consensus 203 ~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhg-G-~---~~d~~-~~~~~~L~~i~~~~~~~~~~~~vi~ 276 (344)
T cd02922 203 DDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHG-G-R---QLDTA-PAPIEVLLEIRKHCPEVFDKIEVYV 276 (344)
T ss_pred HHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCC-c-c---cCCCC-CCHHHHHHHHHHHHHHhCCCceEEE
Confidence 34444443 245888889999999999999999999999644 1 1 12433 33233344444433332 599999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012815 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (456)
Q Consensus 156 D~DtGYG~~~nv~rtVk~l~~AGaaGI~IE 185 (456)
|. |..+...+. +++..||++|.|-
T Consensus 277 ~G--GIr~G~Dv~----kalaLGA~aV~iG 300 (344)
T cd02922 277 DG--GVRRGTDVL----KALCLGAKAVGLG 300 (344)
T ss_pred eC--CCCCHHHHH----HHHHcCCCEEEEC
Confidence 83 322333333 4556899999994
No 343
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=88.29 E-value=14 Score=38.72 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhCccEEEeCCCCC-----------CCCccCCCCccccCH-HHHHHHHHHHHHHhHhhCCCeEEEEecchh
Q 012815 167 VKRTVKGYIKAGFAGIILEDQVS-----------PKGCGHTRGRKVVSR-EEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~-----------pK~CGH~~gk~lvp~-ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~ 234 (456)
..+.+++..++|++||.|--.-+ .||...-+| .+-.. .-..+-|++++++ .|+||.|.-|--..
T Consensus 152 f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGG-slenR~Rf~~eii~aIr~~---vg~~~~v~vRls~~ 227 (370)
T cd02929 152 YVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGG-SLENRARFWRETLEDTKDA---VGDDCAVATRFSVD 227 (370)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCC-ChHhhhHHHHHHHHHHHHH---cCCCceEEEEecHH
Confidence 44556777889999999965421 233332222 22111 1122223333332 46789999996543
Q ss_pred h------cccHHHHHHHHHHhHhcCCCEEEeccC------------C---CHHHHHHHHHhCCCCceeeeeeccCCC-CC
Q 012815 235 Q------ALSLEESLRRSRAFADAGADVLFIDAL------------A---SKEEMKAFCEISPLVPKMANMLEGGGK-TP 292 (456)
Q Consensus 235 ~------~~~ldeAI~RakAy~eAGAD~Ifie~~------------~---s~eei~~i~~~v~~vP~~~N~~~~~g~-tp 292 (456)
. ...++|+++-++...+. .|++-+..- + ..+.++++.+.++ +|++.+ ++- +|
T Consensus 228 ~~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pvi~~----G~i~~~ 301 (370)
T cd02929 228 ELIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTS-KPVVGV----GRFTSP 301 (370)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCC-CCEEEe----CCCCCH
Confidence 2 12478888888888765 687754321 0 1234556666665 677654 221 11
Q ss_pred CCCHHHHHh-cCCCEEeccchHHHHHHHHHHHHHHHHHcCCCC
Q 012815 293 ILNPLELEE-LGFKLVAYPLSLIGVSVRAMQDALTAIKGGRIP 334 (456)
Q Consensus 293 ~lt~~eL~e-lGv~~Vs~p~~ll~aa~~A~~~~l~~i~~g~~~ 334 (456)
-..+++-+ -++..|.++-.++.-- +....+++|+..
T Consensus 302 -~~~~~~l~~g~~D~V~~gR~~ladP-----~l~~k~~~g~~~ 338 (370)
T cd02929 302 -DKMVEVVKSGILDLIGAARPSIADP-----FLPKKIREGRID 338 (370)
T ss_pred -HHHHHHHHcCCCCeeeechHhhhCc-----hHHHHHHcCCcc
Confidence 12344444 4488888876555433 445666776543
No 344
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=88.25 E-value=10 Score=39.87 Aligned_cols=147 Identities=19% Similarity=0.245 Sum_probs=87.1
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhc-cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQA-VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra-~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
|+.+.++|++.|=++ +|-.. -+| .+.++.|.+. .+.-+++-... ..+.++...++|+.
T Consensus 32 a~~L~~~GV~~IE~G----------~p~~~---~~~-~e~i~~i~~~~~~~~i~~~~r~-------~~~di~~a~~~g~~ 90 (378)
T PRK11858 32 ARMLDEIGVDQIEAG----------FPAVS---EDE-KEAIKAIAKLGLNASILALNRA-------VKSDIDASIDCGVD 90 (378)
T ss_pred HHHHHHhCCCEEEEe----------CCCcC---hHH-HHHHHHHHhcCCCeEEEEEccc-------CHHHHHHHHhCCcC
Confidence 455677899888765 23221 111 2234444432 22334443221 24456777889999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie 260 (456)
.|+|-..+++- |...+-=.+.++..+++..+++..++.|..+.+.+ .|+ .....+..++-+++..++|||.|.+.
T Consensus 91 ~i~i~~~~Sd~---h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~-ed~-~r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 91 AVHIFIATSDI---HIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA-EDA-SRTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred EEEEEEcCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe-ccC-CCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 99998765431 22111124678899998888877776664333322 233 23467888999999999999999875
Q ss_pred c---CCCHHHHHHHHHh
Q 012815 261 A---LASKEEMKAFCEI 274 (456)
Q Consensus 261 ~---~~s~eei~~i~~~ 274 (456)
- .-.++++.++.+.
T Consensus 166 DT~G~~~P~~v~~lv~~ 182 (378)
T PRK11858 166 DTVGILDPFTMYELVKE 182 (378)
T ss_pred ccCCCCCHHHHHHHHHH
Confidence 3 3455666655543
No 345
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.24 E-value=2.3 Score=43.66 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=45.4
Q ss_pred HHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccch
Q 012815 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ 312 (456)
++.++..+++|||.|+++..+ .+++++.++.++. .. .++..|....-+..++++.|+..++.+..
T Consensus 215 leea~eA~~aGaDiImLDnms-pe~l~~av~~~~~-~~---~lEaSGGIt~~ni~~yA~tGVD~IS~gal 279 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNFT-LDMMREAVRVTAG-RA---VLEVSGGVNFDTVRAFAETGVDRISIGAL 279 (294)
T ss_pred HHHHHHHHHcCCCEEEECCCC-HHHHHHHHHhhcC-Ce---EEEEECCCCHHHHHHHHhcCCCEEEeCcc
Confidence 355666779999999999875 4788888887653 12 22322322224578999999999998763
No 346
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.23 E-value=2.7 Score=44.38 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCC-ceeecccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCC-CCCHHHHHHHHHHHHhc------
Q 012815 78 AKSLRQILELPG-VHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTG-FISYGEMVDQGQLITQA------ 148 (456)
Q Consensus 78 a~~Lr~ll~~~~-~lv~pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~-~lt~~Eml~~~r~I~ra------ 148 (456)
-..+.+++++-+ +++.-++.+.-.|+-+.++|+|+|.++ |.+-. ..+....+ .++.-..+..+...++.
T Consensus 176 ~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~--~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~ 253 (368)
T PRK08649 176 PLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAA--CTSRGVLGIGVPMATAIADVAAARRDYLDETG 253 (368)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcC--CCCcccCCCCcCHHHHHHHHHHHHHHhhhhhc
Confidence 344666655444 444448999999998889999999987 32210 01110111 13322222222222211
Q ss_pred -cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 149 -VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 149 -~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
.++|||+|.--. +...+. | .+.+||++|.+
T Consensus 254 ~~~vpVIAdGGI~--~~~dia---k-AlalGAd~Vm~ 284 (368)
T PRK08649 254 GRYVHVIADGGIG--TSGDIA---K-AIACGADAVML 284 (368)
T ss_pred CCCCeEEEeCCCC--CHHHHH---H-HHHcCCCeecc
Confidence 159999984333 333333 3 34589999988
No 347
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=88.22 E-value=4 Score=40.52 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=59.4
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012815 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (456)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakA 248 (456)
..++.+..+|++.|.|+=+ |.. .+.+++..-|+++.. .+.-++.|.-.... ...++
T Consensus 24 ~~~e~~~~~g~D~v~iDlE-------H~~----~~~~~~~~~~~a~~~------~g~~~~VRv~~~~~-------~~i~~ 79 (249)
T TIGR02311 24 YAAEICAGAGFDWLLIDGE-------HAP----NDVRTILSQLQALAP------YPSSPVVRPAIGDP-------VLIKQ 79 (249)
T ss_pred HHHHHHHhcCCCEEEEecc-------CCC----CCHHHHHHHHHHHHh------cCCCcEEECCCCCH-------HHHHH
Confidence 3456677899999999655 542 466666665544322 13466778654321 24677
Q ss_pred hHhcCCCEEEeccCCCHHHHHHHHHhCC
Q 012815 249 FADAGADVLFIDALASKEEMKAFCEISP 276 (456)
Q Consensus 249 y~eAGAD~Ifie~~~s~eei~~i~~~v~ 276 (456)
..++|||.|++|.+.+.|+++++++...
T Consensus 80 ~Ld~Ga~gIivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 80 LLDIGAQTLLVPMIETAEQAEAAVAATR 107 (249)
T ss_pred HhCCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 8999999999999999999999998754
No 348
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=88.13 E-value=4.1 Score=44.24 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHH
Q 012815 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~Ra 246 (456)
+.+..+.|.+.+..-+-+-|.. |+.-| +++.++..+.+..-....+. ...+.+-| +.... .+.++++
T Consensus 167 l~eal~~m~~~~~~~lpVVDe~-----g~lvG--iIT~~DLl~~~~~p~a~~d~-~g~l~V~a---ai~~~--~~~~e~a 233 (486)
T PRK05567 167 LEEALELLHEHRIEKLPVVDDN-----GRLKG--LITVKDIEKAEEFPNACKDE-QGRLRVGA---AVGVG--ADNEERA 233 (486)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-----CcEEE--EEEhHHhhhhhhCCCccccc-CCCEEEEe---ecccC--cchHHHH
Confidence 4466677888888877777653 33332 66777776654321111111 11233211 11111 2458999
Q ss_pred HHhHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEecc
Q 012815 247 RAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (456)
Q Consensus 247 kAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p 310 (456)
+++.++|+|+|+++.. .-.+.++.+.+.+|.+|+++ +...+ .=+..+|.++|++.|.++
T Consensus 234 ~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~----g~v~t-~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 234 EALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA----GNVAT-AEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE----eccCC-HHHHHHHHHcCCCEEEEC
Confidence 9999999999998753 23456777777776566543 21111 123568999999999764
No 349
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=88.11 E-value=16 Score=36.90 Aligned_cols=107 Identities=20% Similarity=0.195 Sum_probs=63.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCC-C--CCCccCCCCccc-----------cCHHHHHHHHHHHHHHh
Q 012815 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-S--PKGCGHTRGRKV-----------VSREEAVMRIKAAVDAR 218 (456)
Q Consensus 153 VIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~-~--pK~CGH~~gk~l-----------vp~ee~v~kI~AA~~Ar 218 (456)
+|.=.-.||-+.+...+.++.+.++||+.|-| +. + |. .+|..+ +..+...+-++..+
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iEl--GiPfSDP~----aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r--- 87 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIEL--GIPYSDPL----ADGPIIQEASNRALKQGINLNKILSILSEVN--- 87 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCC----ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHh---
Confidence 44445568888888889999999999998866 33 1 21 122111 11222223333222
Q ss_pred HhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHH
Q 012815 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFC 272 (456)
Q Consensus 219 ~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~ 272 (456)
++...++++..=-.-.-..|+|.-+++| .++|+|.|.++-++- ||..++.
T Consensus 88 ~~~~~p~vlm~Y~N~i~~~G~e~F~~~~---~~aGvdgviipDLP~-ee~~~~~ 137 (263)
T CHL00200 88 GEIKAPIVIFTYYNPVLHYGINKFIKKI---SQAGVKGLIIPDLPY-EESDYLI 137 (263)
T ss_pred cCCCCCEEEEecccHHHHhCHHHHHHHH---HHcCCeEEEecCCCH-HHHHHHH
Confidence 2223455555554444456777766655 689999999999875 3444443
No 350
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=88.07 E-value=15 Score=38.10 Aligned_cols=136 Identities=16% Similarity=0.059 Sum_probs=84.7
Q ss_pred eecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCC-CHHHHHHH
Q 012815 92 QGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRT 170 (456)
Q Consensus 92 v~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG-~~~nv~rt 170 (456)
..|+-.+.-..+.+.++|.+.+-+.-.. .. .+....+++.+.+ .+.-+.+-....+. +++.+.+.
T Consensus 84 l~pg~~~~~dl~~a~~~gvd~iri~~~~------~e-------~~~~~~~i~~ak~-~G~~v~~~l~~a~~~~~e~l~~~ 149 (337)
T PRK08195 84 LLPGIGTVDDLKMAYDAGVRVVRVATHC------TE-------ADVSEQHIGLARE-LGMDTVGFLMMSHMAPPEKLAEQ 149 (337)
T ss_pred eccCcccHHHHHHHHHcCCCEEEEEEec------ch-------HHHHHHHHHHHHH-CCCeEEEEEEeccCCCHHHHHHH
Confidence 3466667777777888899987765211 01 1233444444433 34444444444333 57889999
Q ss_pred HHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhH
Q 012815 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (456)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~ 250 (456)
++.+.++|+..|.|-|.. |. ..++++.+.++++++.- +++.-|--.+ -+.+.-++.-+.+..
T Consensus 150 a~~~~~~Ga~~i~i~DT~-----G~------~~P~~v~~~v~~l~~~l---~~~i~ig~H~----HnnlGla~ANslaAi 211 (337)
T PRK08195 150 AKLMESYGAQCVYVVDSA-----GA------LLPEDVRDRVRALRAAL---KPDTQVGFHG----HNNLGLGVANSLAAV 211 (337)
T ss_pred HHHHHhCCCCEEEeCCCC-----CC------CCHHHHHHHHHHHHHhc---CCCCeEEEEe----CCCcchHHHHHHHHH
Confidence 999999999999999985 33 34567788888777653 2343332222 122334677788888
Q ss_pred hcCCCEEEecc
Q 012815 251 DAGADVLFIDA 261 (456)
Q Consensus 251 eAGAD~Ifie~ 261 (456)
++||+ +|++
T Consensus 212 ~aGa~--~iD~ 220 (337)
T PRK08195 212 EAGAT--RIDG 220 (337)
T ss_pred HhCCC--EEEe
Confidence 99999 4453
No 351
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=88.06 E-value=2.8 Score=43.60 Aligned_cols=85 Identities=11% Similarity=0.042 Sum_probs=52.7
Q ss_pred Cceeec-ccCChHHHHHHHHhCCcEEEecchHHhh--h----hcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCC
Q 012815 89 GVHQGP-ACFDALSAKLVEKSGFSFCFTSGFSISA--A----RLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGY 161 (456)
Q Consensus 89 ~~lv~p-gayDalSArl~e~aGfdAI~vSG~avSa--s----~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGY 161 (456)
+.+++. ++-+.-.|+.+.++|+|++.++..+-+. . ..|.||- .+..++.+++..++|||+| .|.
T Consensus 140 ~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w-------~l~ai~~~~~~~~ipVIAd--GGI 210 (326)
T PRK05458 140 ETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-------QLAALRWCAKAARKPIIAD--GGI 210 (326)
T ss_pred CCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCcc-------HHHHHHHHHHHcCCCEEEe--CCC
Confidence 345555 5889999999999999999988222111 0 1233432 2223444555568999987 233
Q ss_pred CCHHHHHHHHHHHHHhCccEEEeCC
Q 012815 162 GNAMNVKRTVKGYIKAGFAGIILED 186 (456)
Q Consensus 162 G~~~nv~rtVk~l~~AGaaGI~IED 186 (456)
-++.++. +...+||++|.+=.
T Consensus 211 ~~~~Di~----KaLa~GA~aV~vG~ 231 (326)
T PRK05458 211 RTHGDIA----KSIRFGATMVMIGS 231 (326)
T ss_pred CCHHHHH----HHHHhCCCEEEech
Confidence 3444444 33446999998843
No 352
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=88.01 E-value=6.9 Score=39.17 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=85.0
Q ss_pred CChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCC-CHHHHHHHHHHHH
Q 012815 97 FDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRTVKGYI 175 (456)
Q Consensus 97 yDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG-~~~nv~rtVk~l~ 175 (456)
.|.---..+.+.|++.|-++- +. -.++++...++.+.+ .+..|.+.+.+.++ +++.+.+.++++.
T Consensus 83 ~~~~~l~~a~~~gv~~iri~~----------~~---~~~~~~~~~i~~ak~-~G~~v~~~~~~a~~~~~~~~~~~~~~~~ 148 (266)
T cd07944 83 DDIDLLEPASGSVVDMIRVAF----------HK---HEFDEALPLIKAIKE-KGYEVFFNLMAISGYSDEELLELLELVN 148 (266)
T ss_pred CCHHHHHHHhcCCcCEEEEec----------cc---ccHHHHHHHHHHHHH-CCCeEEEEEEeecCCCHHHHHHHHHHHH
Confidence 444445556677888877642 11 146666666666543 35778888888776 5678999999999
Q ss_pred HhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCC
Q 012815 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGAD 255 (456)
Q Consensus 176 ~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD 255 (456)
++|+..|.|-|.. | ...++++.+.++++++.. +++.-|-.-+ -..+.-|+.-+.+..++||+
T Consensus 149 ~~g~~~i~l~DT~-----G------~~~P~~v~~lv~~l~~~~---~~~~~i~~H~----Hn~~Gla~AN~laA~~aGa~ 210 (266)
T cd07944 149 EIKPDVFYIVDSF-----G------SMYPEDIKRIISLLRSNL---DKDIKLGFHA----HNNLQLALANTLEAIELGVE 210 (266)
T ss_pred hCCCCEEEEecCC-----C------CCCHHHHHHHHHHHHHhc---CCCceEEEEe----CCCccHHHHHHHHHHHcCCC
Confidence 9999999999986 3 334567777777776543 2223332221 12334567778888899997
Q ss_pred EE
Q 012815 256 VL 257 (456)
Q Consensus 256 ~I 257 (456)
.|
T Consensus 211 ~v 212 (266)
T cd07944 211 II 212 (266)
T ss_pred EE
Confidence 54
No 353
>PRK09389 (R)-citramalate synthase; Provisional
Probab=88.00 E-value=12 Score=40.91 Aligned_cols=200 Identities=17% Similarity=0.134 Sum_probs=110.6
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
|+.+.++|++.|=++..+. + -+| .+.+++|.+.. +.-|.+-... ..+-++...++|+.
T Consensus 30 a~~L~~~Gv~~IE~G~p~~-----~--------~~d-~e~v~~i~~~~~~~~i~a~~r~-------~~~di~~a~~~g~~ 88 (488)
T PRK09389 30 ARKLDELGVDVIEAGSAIT-----S--------EGE-REAIKAVTDEGLNAEICSFARA-------VKVDIDAALECDVD 88 (488)
T ss_pred HHHHHHcCCCEEEEeCCcC-----C--------HHH-HHHHHHHHhcCCCcEEEeeccc-------CHHHHHHHHhCCcC
Confidence 4567789999998874331 1 111 23445555432 2334332222 23446677789999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie 260 (456)
.|+|-..+++. |...+--.+.+|.++++..+++-.++.|..+.+.+ .|+ .....+-+++-+++..++|||.|.+.
T Consensus 89 ~v~i~~~~Sd~---h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~-ed~-~r~~~~~l~~~~~~~~~~Ga~~i~l~ 163 (488)
T PRK09389 89 SVHLVVPTSDL---HIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG-EDA-SRADLDFLKELYKAGIEAGADRICFC 163 (488)
T ss_pred EEEEEEccCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE-eeC-CCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 99998776543 32222234678888888888776665554444433 233 23456778888999999999999876
Q ss_pred c---CCCHHHHHHHHHhCCC-CceeeeeeccCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHHHHHHHHHHHH
Q 012815 261 A---LASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVRAMQDALTAIK 329 (456)
Q Consensus 261 ~---~~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~lt---~~eL~elGv~~Vs~p~~ll--~aa~~A~~~~l~~i~ 329 (456)
- ...++++.++.+.+.. .++++.+ +... ...+. ...--+.|+.+|-.....+ ++.-.++++.+..|+
T Consensus 164 DTvG~~~P~~~~~lv~~l~~~~~v~l~~-H~HN-D~GlAvANalaAv~aGa~~Vd~Ti~GiGERaGNa~lE~lv~~L~ 239 (488)
T PRK09389 164 DTVGILTPEKTYELFKRLSELVKGPVSI-HCHN-DFGLAVANTLAALAAGADQVHVTINGIGERAGNASLEEVVMALK 239 (488)
T ss_pred cCCCCcCHHHHHHHHHHHHhhcCCeEEE-EecC-CccHHHHHHHHHHHcCCCEEEEEcccccccccCccHHHHHHHHH
Confidence 3 3456677666654321 2233332 1111 11121 2333467887775543332 233334444444443
No 354
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=88.00 E-value=6.1 Score=37.80 Aligned_cols=123 Identities=20% Similarity=0.188 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHH
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~R 245 (456)
+..+.++.|.+.|++.++|=|-... ..||.. ..+++.+| ++.. +.++.+.+.... .++
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~------~~~~i~~i---~~~~---~~pv~~~GgI~~---------~e~ 87 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGA-KGGEPV------NLELIEEI---VKAV---GIPVQVGGGIRS---------LED 87 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcc-ccCCCC------CHHHHHHH---HHhc---CCCEEEeCCcCC---------HHH
Confidence 4456678888999999999875421 112211 12334343 3332 235565555333 467
Q ss_pred HHHhHhcCCCEEEecc--CCCHHHHHHHHHhCCCCce--eeeeec-----cCCC-CCCCC----HHHHHhcCCCEEecc
Q 012815 246 SRAFADAGADVLFIDA--LASKEEMKAFCEISPLVPK--MANMLE-----GGGK-TPILN----PLELEELGFKLVAYP 310 (456)
Q Consensus 246 akAy~eAGAD~Ifie~--~~s~eei~~i~~~v~~vP~--~~N~~~-----~~g~-tp~lt----~~eL~elGv~~Vs~p 310 (456)
++.+.++|||.|++-. +.+.+.++++.+.++.-++ .+++-. .++. ....+ .+++.+.|+..+++.
T Consensus 88 ~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 88 IERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred HHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 8888889999999865 4677888898888753122 222111 0110 01122 366888999999885
No 355
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=87.99 E-value=0.86 Score=47.33 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=48.8
Q ss_pred HHHHHHHHHhHhcCC--CEEEecc-----CCCHHHHHHHHHhCCCCceee-eeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 240 EESLRRSRAFADAGA--DVLFIDA-----LASKEEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 240 deAI~RakAy~eAGA--D~Ifie~-----~~s~eei~~i~~~v~~vP~~~-N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
++..+|+.+..+||+ |+|.++. ..-.+.++++.+.+|.+|+++ |+. ++ -....|.++|+..+.++.
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-----t~-e~a~~l~~aGad~i~vg~ 169 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-----TP-EAVRELENAGADATKVGI 169 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-----CH-HHHHHHHHcCcCEEEECC
Confidence 356799999999965 9999944 333456788888888777776 442 11 246889999999988664
Q ss_pred h
Q 012815 312 S 312 (456)
Q Consensus 312 ~ 312 (456)
+
T Consensus 170 ~ 170 (326)
T PRK05458 170 G 170 (326)
T ss_pred C
Confidence 4
No 356
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=87.88 E-value=22 Score=38.55 Aligned_cols=143 Identities=20% Similarity=0.284 Sum_probs=82.8
Q ss_pred CcEEEeCCC--CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE
Q 012815 151 IPVIGDGDN--GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV 228 (456)
Q Consensus 151 iPVIaD~Dt--GYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi 228 (456)
+-+|.|-+. +++. ...+.++++.++|+..|+|-++. .+.+++.+.++.+++..+..+..++|+
T Consensus 293 ly~it~~~~~~~~~~--~~~~~l~~~l~~Gv~~vqlR~k~-------------~~~~~~~~~a~~l~~~~~~~~~~liin 357 (502)
T PLN02898 293 LYAVTDSGMNKKWGR--STVDAVRAAIEGGATIVQLREKE-------------AETREFIEEAKACLAICRSYGVPLLIN 357 (502)
T ss_pred EEEEECccccccccc--hHHHHHHHHHHcCCCEEEEccCC-------------CCHHHHHHHHHHHHHHHHHhCCEEEEc
Confidence 335666544 2333 24556888999999999998763 133455555555555444445667887
Q ss_pred Eecchhh------cc----c--HHH----------------HHHHHHHhHhcCCCEEEeccC-----------CCHHHHH
Q 012815 229 ARTDSRQ------AL----S--LEE----------------SLRRSRAFADAGADVLFIDAL-----------ASKEEMK 269 (456)
Q Consensus 229 ARTDA~~------~~----~--lde----------------AI~RakAy~eAGAD~Ifie~~-----------~s~eei~ 269 (456)
.|.|-.. .+ + ..+ .++.+....+.|||.|++-.+ ...+.++
T Consensus 358 d~~~lA~~~~adGvHl~~~d~~~~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~ 437 (502)
T PLN02898 358 DRVDVALACDADGVHLGQSDMPVRLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLR 437 (502)
T ss_pred ChHHHHHhcCCCEEEeChHhcCHHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHH
Confidence 7766421 00 0 011 112234555789999874211 1356788
Q ss_pred HHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCC---EEeccchHH
Q 012815 270 AFCEISPLVPKMANMLEGGGKTPILNPLELEELGFK---LVAYPLSLI 314 (456)
Q Consensus 270 ~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~---~Vs~p~~ll 314 (456)
++++..+ +|+++ + ||-++ -+..++.+.|+. .|.....++
T Consensus 438 ~~~~~~~-~Pv~a--i--GGI~~-~~~~~~~~~G~~~~~gvav~~~i~ 479 (502)
T PLN02898 438 EVCEASK-LPVVA--I--GGISA-SNAASVMESGAPNLKGVAVVSALF 479 (502)
T ss_pred HHHHcCC-CCEEE--E--CCCCH-HHHHHHHHcCCCcCceEEEEeHHh
Confidence 8877654 67542 2 34322 245778888887 777766654
No 357
>PRK07695 transcriptional regulator TenI; Provisional
Probab=87.87 E-value=3.7 Score=38.87 Aligned_cols=96 Identities=22% Similarity=0.293 Sum_probs=60.3
Q ss_pred HHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEe
Q 012815 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (456)
Q Consensus 77 ~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD 156 (456)
..+.+|+.+ ++.++...+++.-.++.++++|++.+..+-.--+.+ .|+.....+ ...+.+++.+++||++=
T Consensus 85 ~~~~~r~~~--~~~~ig~s~~s~e~a~~a~~~Gadyi~~g~v~~t~~---k~~~~~~g~----~~l~~~~~~~~ipvia~ 155 (201)
T PRK07695 85 SVRSVREKF--PYLHVGYSVHSLEEAIQAEKNGADYVVYGHVFPTDC---KKGVPARGL----EELSDIARALSIPVIAI 155 (201)
T ss_pred CHHHHHHhC--CCCEEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCC---CCCCCCCCH----HHHHHHHHhCCCCEEEE
Confidence 345667655 345666689999999999999999997762111111 122222222 34455666678999973
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCC
Q 012815 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (456)
Q Consensus 157 ~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~ 188 (456)
|+. + .++++.+.++|++||-+=...
T Consensus 156 -----GGI-~-~~~~~~~~~~Ga~gvav~s~i 180 (201)
T PRK07695 156 -----GGI-T-PENTRDVLAAGVSGIAVMSGI 180 (201)
T ss_pred -----cCC-C-HHHHHHHHHcCCCEEEEEHHH
Confidence 432 1 244567778999999875543
No 358
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=87.84 E-value=34 Score=34.86 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHhC-------ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh
Q 012815 163 NAMNVKRTVKGYIKAG-------FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ 235 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AG-------aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~ 235 (456)
+++++.++++.--+++ -.=|+||= |.+.+-|.|- -++-++|+..-.+ .+|.|.--|-..
T Consensus 82 tA~EAv~~A~laRe~~~~~~~~~~~wIKLEV--------i~D~~~LlPD--~~etl~Aae~Lv~---eGF~VlPY~~~D- 147 (267)
T CHL00162 82 TAEEAIRMAFLGRELAKQLGQEDNNFVKLEV--------ISDPKYLLPD--PIGTLKAAEFLVK---KGFTVLPYINAD- 147 (267)
T ss_pred CHHHHHHHHHHHHHHhccccccCCCeEEEEE--------eCCCcccCCC--hHHHHHHHHHHHH---CCCEEeecCCCC-
Confidence 6667777776655654 55666663 2233456663 3678888877665 479998876543
Q ss_pred cccHHHHHHHHHHhHhcCCCEEEecc--------CCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEE
Q 012815 236 ALSLEESLRRSRAFADAGADVLFIDA--------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (456)
Q Consensus 236 ~~~ldeAI~RakAy~eAGAD~Ifie~--------~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~V 307 (456)
.--|++++++||-+|++.+ +.++..++.+.+..+ +|+++. .|=.+| -....-.|+|+.-|
T Consensus 148 -------~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~-vpVivd---AGIgt~-sDa~~AmElGaDgV 215 (267)
T CHL00162 148 -------PMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAK-IPVIID---AGIGTP-SEASQAMELGASGV 215 (267)
T ss_pred -------HHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCC-CcEEEe---CCcCCH-HHHHHHHHcCCCEE
Confidence 2448999999999999875 467888999988766 787654 221222 24567789999988
Q ss_pred eccchH
Q 012815 308 AYPLSL 313 (456)
Q Consensus 308 s~p~~l 313 (456)
......
T Consensus 216 L~nSaI 221 (267)
T CHL00162 216 LLNTAV 221 (267)
T ss_pred eeccee
Confidence 876653
No 359
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=87.79 E-value=34 Score=34.98 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=58.1
Q ss_pred HHHHHHhCCcEEEec-c-hHHhhhhcccC-CCCCCCHHHHHHHHHHHHhc-c--CCcEEEeCCCCC-C-CHHHHHHHHHH
Q 012815 102 AKLVEKSGFSFCFTS-G-FSISAARLALP-DTGFISYGEMVDQGQLITQA-V--SIPVIGDGDNGY-G-NAMNVKRTVKG 173 (456)
Q Consensus 102 Arl~e~aGfdAI~vS-G-~avSas~lG~P-D~~~lt~~Eml~~~r~I~ra-~--~iPVIaD~DtGY-G-~~~nv~rtVk~ 173 (456)
.+.++++|+.+|.+= . +.=-...+|.- ...+++.+|++..++.++++ . +++|+|=-|.-. + +..++.+-.+.
T Consensus 98 V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~a 177 (285)
T TIGR02320 98 VRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEA 177 (285)
T ss_pred HHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHH
Confidence 355677899999882 1 10000112221 23578999999999998776 2 588888877632 1 35667777899
Q ss_pred HHHhCccEEEeCC
Q 012815 174 YIKAGFAGIILED 186 (456)
Q Consensus 174 l~~AGaaGI~IED 186 (456)
|.+|||++|.++.
T Consensus 178 y~eAGAD~ifv~~ 190 (285)
T TIGR02320 178 YAEAGADGIMIHS 190 (285)
T ss_pred HHHcCCCEEEecC
Confidence 9999999999983
No 360
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=87.71 E-value=14 Score=39.40 Aligned_cols=215 Identities=13% Similarity=0.141 Sum_probs=111.1
Q ss_pred ecccCCh----HHHHHHHHhCCcEEEec-chHHhhhhcccCCCC---CCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCH
Q 012815 93 GPACFDA----LSAKLVEKSGFSFCFTS-GFSISAARLALPDTG---FISYGEMVDQGQLITQAVSIPVIGDGDNGYGNA 164 (456)
Q Consensus 93 ~pgayDa----lSArl~e~aGfdAI~vS-G~avSas~lG~PD~~---~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~ 164 (456)
+.|+++. --|+.++++|+|++=+- |.-.. .+..+.+ .-..+.+-+.++.+.+.+++||++=+-- +.
T Consensus 120 i~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~---~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP---n~ 193 (385)
T PLN02495 120 IMEEYNKDAWEEIIERVEETGVDALEINFSCPHG---MPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP---NI 193 (385)
T ss_pred ccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC---CCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCC---Ch
Confidence 4455663 34667788999988764 32211 1122221 1123333334466666678999998763 33
Q ss_pred HHHHHHHHHHHHhCccEEEeCCCCCC------C------------CccCCCCccccCHHHHHHHHHHHHHHhH-hhCCCe
Q 012815 165 MNVKRTVKGYIKAGFAGIILEDQVSP------K------------GCGHTRGRKVVSREEAVMRIKAAVDARK-ESGSDI 225 (456)
Q Consensus 165 ~nv~rtVk~l~~AGaaGI~IEDq~~p------K------------~CGH~~gk~lvp~ee~v~kI~AA~~Ar~-~~G~df 225 (456)
.++...++.+.++||+||.+=..... . ..|-..|+++-|.. ...+..+.++.. ....++
T Consensus 194 t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiA--l~~v~~i~~~~~~~~~~~i 271 (385)
T PLN02495 194 TDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIA--LAKVMAIAKMMKSEFPEDR 271 (385)
T ss_pred hhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHH--HHHHHHHHHHHhhhccCCC
Confidence 45777788889999999988665421 0 11223356666664 223332322221 111234
Q ss_pred EEEEecchhhcccHHHHHHHHHHhHhcCCCEEEecc--C-CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhc
Q 012815 226 VIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA--L-ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL 302 (456)
Q Consensus 226 vIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~--~-~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~el 302 (456)
-|++=.--. .- +.+..|..|||++|-+=. + .-.+.++++.+.+. +.++..| .-+.+|+.-.
T Consensus 272 pIiGvGGI~---s~----~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~------~~m~~~G---~~si~e~~G~ 335 (385)
T PLN02495 272 SLSGIGGVE---TG----GDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQ------DFMKKHN---FSSIEDFRGA 335 (385)
T ss_pred cEEEECCCC---CH----HHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHH------HHHHHcC---CCCHHHHhCc
Confidence 455543222 22 446667889999986533 1 22456666666543 1122212 1256777666
Q ss_pred CCCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 012815 303 GFKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (456)
Q Consensus 303 Gv~~Vs~p~~ll~aa~~A~~~~l~~i~~g~ 332 (456)
..+.+.--..|-.....++.+. ..|+.|+
T Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 364 (385)
T PLN02495 336 SLPYFTTHTDLVQRQKEAIRQR-KAIRKGL 364 (385)
T ss_pred CCcccCcHHHhhHHHHHhhCHH-HHhhhcc
Confidence 6665553333444444444333 3455554
No 361
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=87.70 E-value=2.9 Score=43.87 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=56.7
Q ss_pred CceeecccCChHHHHHHHHhCCcEEEec-chHHhhh-h----cccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCC
Q 012815 89 GVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAA-R----LALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG 162 (456)
Q Consensus 89 ~~lv~pgayDalSArl~e~aGfdAI~vS-G~avSas-~----lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG 162 (456)
-.+++=|+-++-.|+-+.++|+|++=++ |-+-... . .|+| .-.-+..+...++..++|||+|.---|.
T Consensus 152 ~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~P------QltAV~~~a~~a~~~gvpiIADGGi~~s 225 (346)
T PRK05096 152 KTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYP------QLSAVIECADAAHGLGGQIVSDGGCTVP 225 (346)
T ss_pred CcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChh------HHHHHHHHHHHHHHcCCCEEecCCcccc
Confidence 4577889999999999999999999887 3221111 1 2444 3334455566667778999999543332
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCC
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILED 186 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IED 186 (456)
-.-+|.+ .+||+.|.|-.
T Consensus 226 -----GDI~KAl-aaGAd~VMlGs 243 (346)
T PRK05096 226 -----GDVAKAF-GGGADFVMLGG 243 (346)
T ss_pred -----cHHHHHH-HcCCCEEEeCh
Confidence 2233433 48999999843
No 362
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=87.63 E-value=2.6 Score=44.74 Aligned_cols=82 Identities=22% Similarity=0.210 Sum_probs=54.4
Q ss_pred CCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc--CCcEEEeCCCCCCCHH
Q 012815 88 PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAM 165 (456)
Q Consensus 88 ~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~--~iPVIaD~DtGYG~~~ 165 (456)
+.++++-|+-+.-.|+.+.++|+++|.+|+.+-- ..|...-|. +.+.. |.+++ ++||++|. |+-+..
T Consensus 245 ~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr-----~~d~~~~t~-~~L~~---i~~a~~~~~~vi~dG--GIr~g~ 313 (381)
T PRK11197 245 DGPMVIKGILDPEDARDAVRFGADGIVVSNHGGR-----QLDGVLSSA-RALPA---IADAVKGDITILADS--GIRNGL 313 (381)
T ss_pred CCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCC-----CCCCcccHH-HHHHH---HHHHhcCCCeEEeeC--CcCcHH
Confidence 5689999999999999999999999999975521 224332233 33332 22333 59999983 333433
Q ss_pred HHHHHHHHHHHhCccEEEe
Q 012815 166 NVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~I 184 (456)
++. |. ...||.+|.+
T Consensus 314 Di~---KA-LaLGA~~V~i 328 (381)
T PRK11197 314 DVV---RM-IALGADTVLL 328 (381)
T ss_pred HHH---HH-HHcCcCceeE
Confidence 444 33 3469999987
No 363
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=87.62 E-value=15 Score=38.73 Aligned_cols=146 Identities=18% Similarity=0.241 Sum_probs=98.7
Q ss_pred HHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEE
Q 012815 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGII 183 (456)
Q Consensus 104 l~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~ 183 (456)
.++++|+|.+=++ .|| .|-......|++.+++|||+|+-+= ++..-...+.|++.+.
T Consensus 44 ~L~~aG~dIVRvt----------v~~------~e~A~A~~~Ik~~~~vPLVaDiHf~-------~rla~~~~~~g~~k~R 100 (361)
T COG0821 44 ALERAGCDIVRVT----------VPD------MEAAEALKEIKQRLNVPLVADIHFD-------YRLALEAAECGVDKVR 100 (361)
T ss_pred HHHHcCCCEEEEe----------cCC------HHHHHHHHHHHHhCCCCEEEEeecc-------HHHHHHhhhcCcceEE
Confidence 3577899988765 222 2334567788888899999997654 4566677788999999
Q ss_pred eCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh------------cccHHHHHHHHHHhHh
Q 012815 184 LEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ------------ALSLEESLRRSRAFAD 251 (456)
Q Consensus 184 IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~------------~~~ldeAI~RakAy~e 251 (456)
|.-+- .+. -+|++..++++++.|..+.|=.-.-++. ...++.|++-++.+.+
T Consensus 101 INPGN-------ig~---------~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~ 164 (361)
T COG0821 101 INPGN-------IGF---------KDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEE 164 (361)
T ss_pred ECCcc-------cCc---------HHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 97752 221 1277778877777676666655444431 1236889999999999
Q ss_pred cCCCEEEeccCC-C----HHHHHHHHHhCCCCceeeeeeccCC
Q 012815 252 AGADVLFIDALA-S----KEEMKAFCEISPLVPKMANMLEGGG 289 (456)
Q Consensus 252 AGAD~Ifie~~~-s----~eei~~i~~~v~~vP~~~N~~~~~g 289 (456)
.|=+=|.+-... + .+..+.+++... .|+=+-++|.|+
T Consensus 165 l~f~~i~iS~K~Sdv~~~v~aYr~lA~~~d-yPLHLGvTEAG~ 206 (361)
T COG0821 165 LGFDDIKVSVKASDVQLMVAAYRLLAKRCD-YPLHLGVTEAGM 206 (361)
T ss_pred CCCCcEEEEEEcCCHHHHHHHHHHHHHhcC-CCcccceecccC
Confidence 998866654322 2 344455666666 788788887654
No 364
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=87.57 E-value=12 Score=39.07 Aligned_cols=151 Identities=19% Similarity=0.148 Sum_probs=93.9
Q ss_pred cccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHH---HHHhccCCcEEEe---CCCC-------
Q 012815 94 PACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQ---LITQAVSIPVIGD---GDNG------- 160 (456)
Q Consensus 94 pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r---~I~ra~~iPVIaD---~DtG------- 160 (456)
|...+.+|..-+.+.|.++|-+-= .+| ||...-.-++++..++ .-|+..++|+++= -+.|
T Consensus 104 ~~~~~~~sve~a~~~GAdAVk~lv------~~~-~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~ 176 (340)
T PRK12858 104 PDLLDNWSVRRIKEAGADAVKLLL------YYR-PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAE 176 (340)
T ss_pred ccccccccHHHHHHcCCCEEEEEE------EeC-CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccc
Confidence 334555677778888998776542 223 5533211244444444 4466778998873 1222
Q ss_pred -CC--CHHHHHHHHHHHH--HhCccEEEeCCCCCCC-CccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh
Q 012815 161 -YG--NAMNVKRTVKGYI--KAGFAGIILEDQVSPK-GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (456)
Q Consensus 161 -YG--~~~nv~rtVk~l~--~AGaaGI~IEDq~~pK-~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~ 234 (456)
|. .+..|.+++|.+. +.||+=+++|=-..+| .=|...+..+++.++..+..+..+++. +.+++|.+.--
T Consensus 177 ~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~---~~P~vvlsgG~-- 251 (340)
T PRK12858 177 EFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT---DLPFIFLSAGV-- 251 (340)
T ss_pred cccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC---CCCEEEECCCC--
Confidence 32 3567999999999 4999999997643221 123334466788888878777777764 35677765542
Q ss_pred hcccHHHHHHHHHHhHhcCC--CEEEe
Q 012815 235 QALSLEESLRRSRAFADAGA--DVLFI 259 (456)
Q Consensus 235 ~~~~ldeAI~RakAy~eAGA--D~Ifi 259 (456)
+-++.++..+...++|| -.+.+
T Consensus 252 ---~~~~f~~~l~~A~~aGa~f~Gvl~ 275 (340)
T PRK12858 252 ---SPELFRRTLEFACEAGADFSGVLC 275 (340)
T ss_pred ---CHHHHHHHHHHHHHcCCCccchhh
Confidence 22445677777778999 55553
No 365
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=87.57 E-value=18 Score=38.31 Aligned_cols=148 Identities=20% Similarity=0.268 Sum_probs=97.3
Q ss_pred HHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEE
Q 012815 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGI 182 (456)
Q Consensus 103 rl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI 182 (456)
+-++++|++.+=++ .||. +-....+.|++..++|||||+-+-| +.+-..+++|++++
T Consensus 49 ~~L~~aGceiVRva----------v~~~------~~a~al~~I~~~~~iPlvADIHFd~-------~lAl~a~~~G~~~i 105 (360)
T PRK00366 49 KRLARAGCEIVRVA----------VPDM------EAAAALPEIKKQLPVPLVADIHFDY-------RLALAAAEAGADAL 105 (360)
T ss_pred HHHHHcCCCEEEEc----------cCCH------HHHHhHHHHHHcCCCCEEEecCCCH-------HHHHHHHHhCCCEE
Confidence 44678899988765 3332 2345667788888999999998764 34445667899999
Q ss_pred EeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh------------cccHHHHHHHHHHhH
Q 012815 183 ILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ------------ALSLEESLRRSRAFA 250 (456)
Q Consensus 183 ~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~------------~~~ldeAI~RakAy~ 250 (456)
-|.-+ +.+. ..+|++..++++++.+..+.|=.-.-++. ..-++.|++-++.+.
T Consensus 106 RINPG-------Nig~--------~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le 170 (360)
T PRK00366 106 RINPG-------NIGK--------RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILE 170 (360)
T ss_pred EECCC-------CCCc--------hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99765 3321 13466666666665555555544333321 123688999999999
Q ss_pred hcCCCEEEeccC-----CCHHHHHHHHHhCCCCceeeeeeccCC
Q 012815 251 DAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGG 289 (456)
Q Consensus 251 eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N~~~~~g 289 (456)
+.|=+=|.+-.- ...+..+.+++..+ +|+=+-++|.|.
T Consensus 171 ~~~f~~iviS~KsS~v~~~i~ayrlla~~~d-yPLHlGvTEAG~ 213 (360)
T PRK00366 171 ELGFDDIKISVKASDVQDLIAAYRLLAKRCD-YPLHLGVTEAGM 213 (360)
T ss_pred HCCCCcEEEEEEcCCHHHHHHHHHHHHhcCC-CCceecccCCCC
Confidence 999887776542 12344555666665 888888888743
No 366
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=87.54 E-value=7.8 Score=39.08 Aligned_cols=197 Identities=24% Similarity=0.251 Sum_probs=104.0
Q ss_pred HHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec---chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEe
Q 012815 80 SLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (456)
Q Consensus 80 ~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vS---G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD 156 (456)
-|-++++.+ +...+-++-+|+++|++|.-|+..= -+-+=+ . +.+..--=...++.|..++++||++-
T Consensus 14 g~a~m~KGG---VIMDV~n~EQA~IAE~aGAvAVMaLervPaDiR~------a-GGVaRMaDp~~i~eim~aVsIPVMAK 83 (296)
T COG0214 14 GFAQMLKGG---VIMDVVNAEQARIAEEAGAVAVMALERVPADIRA------A-GGVARMADPKMIEEIMDAVSIPVMAK 83 (296)
T ss_pred hHHHHhcCC---eEEEecCHHHHHHHHhcCceeEeehhhCcHHHHh------c-cCccccCCHHHHHHHHHhcccceeee
Confidence 366666544 4457788999999999998777643 111110 1 11111111346788999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCC-C---------------CCCccCCCCccccCHHHHHHHHHHHHHHhHh
Q 012815 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-S---------------PKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (456)
Q Consensus 157 ~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~-~---------------pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~ 220 (456)
.--|+-- + .+-++..|++-|- |-.+ . |=.||-. ..-|++.||.--
T Consensus 84 vRIGH~~-----E-A~iLealgVD~ID-ESEVLTPAD~~~Hi~K~~FtVPFVcGar------nLgEAlRRI~EG------ 144 (296)
T COG0214 84 VRIGHFV-----E-AQILEALGVDMID-ESEVLTPADEEFHINKWKFTVPFVCGAR------NLGEALRRISEG------ 144 (296)
T ss_pred eecchhH-----H-HHHHHHhCCCccc-cccccCCCchhhhcchhhcccceecCcC------cHHHHHHHHhhh------
Confidence 8888421 1 2456677888762 1111 1 3456542 345666665321
Q ss_pred hCCCeEEEEecchhhcc-c----------HHHHHHHHHHhHhcCCCEEEecc--CCCH-HHHHHHHHhCCCCceeeeeec
Q 012815 221 SGSDIVIVARTDSRQAL-S----------LEESLRRSRAFADAGADVLFIDA--LASK-EEMKAFCEISPLVPKMANMLE 286 (456)
Q Consensus 221 ~G~dfvIiARTDA~~~~-~----------ldeAI~RakAy~eAGAD~Ifie~--~~s~-eei~~i~~~v~~vP~~~N~~~ 286 (456)
--.-||..++.. . +.+.|++.+... -|-++..+ +..+ +.++++.+ ...+|+ +|...
T Consensus 145 -----AaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~---edel~~~Ak~~~~p~elv~~~~~-~grLPV-vnFAA 214 (296)
T COG0214 145 -----AAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMT---EDELYVVAKELQAPYELVKEVAK-LGRLPV-VNFAA 214 (296)
T ss_pred -----HHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccC---HHHHHHHHHHhCChHHHHHHHHH-hCCCCe-Eeecc
Confidence 112344443321 1 233344433211 11111111 1111 23333333 333564 68777
Q ss_pred cCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 287 GGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 287 ~~g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
++-.|| -+..=+.+||..-|..|+..+.+
T Consensus 215 GGvATP-ADAALMM~LGadGVFVGSGIFKS 243 (296)
T COG0214 215 GGVATP-ADAALMMQLGADGVFVGSGIFKS 243 (296)
T ss_pred cCcCCh-hHHHHHHHhCCCeEEecccccCC
Confidence 654454 23445789999999998876543
No 367
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=87.49 E-value=24 Score=35.37 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
+...+.+.++++++.||+-|=|-.+. .-.|...++.++-.+|+.-++++.++. .+..| -.|.... ++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~s------t~p~~~~i~~~~E~~rl~~~v~~i~~~-~~~pl--SIDT~~~----~v 88 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGES------TRPGADPVSVEEELERVIPVLEALRGE-LDVLI--SVDTFRA----EV 88 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCc------CCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCcE--EEeCCCH----HH
Confidence 45778888999999999999884432 112344566677777877666655432 13332 2354443 33
Q ss_pred HHHHHHhHhcCCCEEE-eccCCCHHHHHHHHHhCCCCceee
Q 012815 243 LRRSRAFADAGADVLF-IDALASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 243 I~RakAy~eAGAD~If-ie~~~s~eei~~i~~~v~~vP~~~ 282 (456)
++.|. ++|+|+|= +.+.+..+++..+++... .|+.+
T Consensus 89 ~e~al---~~G~~iINdisg~~~~~~~~~l~~~~~-~~vV~ 125 (257)
T cd00739 89 ARAAL---EAGADIINDVSGGSDDPAMLEVAAEYG-APLVL 125 (257)
T ss_pred HHHHH---HhCCCEEEeCCCCCCChHHHHHHHHcC-CCEEE
Confidence 33333 34999886 566553256777777764 55554
No 368
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.49 E-value=4.2 Score=41.37 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=50.4
Q ss_pred CCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCHHHHHh
Q 012815 223 SDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEE 301 (456)
Q Consensus 223 ~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~~eL~e 301 (456)
++..|..-++. + +.++...++|||.|.++. .+.++++++++..+ .+|+.+ .||-+ .-+..++.+
T Consensus 188 ~~~~I~VEv~t-----l----eea~eA~~~gaD~I~LD~-~~~e~l~~~v~~~~~~i~leA----sGGIt-~~ni~~~a~ 252 (277)
T PRK05742 188 PGKPVEVEVES-----L----DELRQALAAGADIVMLDE-LSLDDMREAVRLTAGRAKLEA----SGGIN-ESTLRVIAE 252 (277)
T ss_pred CCCeEEEEeCC-----H----HHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhCCCCcEEE----ECCCC-HHHHHHHHH
Confidence 45566666654 2 345556689999999965 46789999888662 344332 23422 134589999
Q ss_pred cCCCEEeccch
Q 012815 302 LGFKLVAYPLS 312 (456)
Q Consensus 302 lGv~~Vs~p~~ 312 (456)
.|+..++.+..
T Consensus 253 tGvD~Isvg~l 263 (277)
T PRK05742 253 TGVDYISIGAM 263 (277)
T ss_pred cCCCEEEEChh
Confidence 99999998763
No 369
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=87.40 E-value=32 Score=35.74 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=82.9
Q ss_pred HHHHHHHHhCCcEEEec---chHHhhhh----cccCCCCCCCHHH----HHHHHHHHHhccCC-cEEEeCC-----CC--
Q 012815 100 LSAKLVEKSGFSFCFTS---GFSISAAR----LALPDTGFISYGE----MVDQGQLITQAVSI-PVIGDGD-----NG-- 160 (456)
Q Consensus 100 lSArl~e~aGfdAI~vS---G~avSas~----lG~PD~~~lt~~E----ml~~~r~I~ra~~i-PVIaD~D-----tG-- 160 (456)
-+|+.+.++|||+|-+- ||-++-.. .=..|.--=+++. +++.+++|.++++. ||.+=+- .|
T Consensus 156 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~ 235 (338)
T cd02933 156 QAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMG 235 (338)
T ss_pred HHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCC
Confidence 57889999999999886 44443211 1122321113442 23345555555543 6665331 12
Q ss_pred CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccH
Q 012815 161 YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (456)
Q Consensus 161 YG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~l 239 (456)
+| +.+...+.++.++++|++-|++-...... .. + -..-+++++|+.++ +..++++++-+ .
T Consensus 236 ~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~----~~--~-~~~~~~~~~ik~~~------~ipvi~~G~i~---~--- 296 (338)
T cd02933 236 DSDPEATFSYLAKELNKRGLAYLHLVEPRVAG----NP--E-DQPPDFLDFLRKAF------KGPLIAAGGYD---A--- 296 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecCCCCC----cc--c-ccchHHHHHHHHHc------CCCEEEECCCC---H---
Confidence 34 34677889999999999999995442111 00 0 01123445554432 34677777764 1
Q ss_pred HHHHHHHHHhHhc-CCCEEEec--cCCCHHHHHHHHH
Q 012815 240 EESLRRSRAFADA-GADVLFID--ALASKEEMKAFCE 273 (456)
Q Consensus 240 deAI~RakAy~eA-GAD~Ifie--~~~s~eei~~i~~ 273 (456)
+.+..+.+. +||+|.+- .+.+++..+++.+
T Consensus 297 ----~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~~ 329 (338)
T cd02933 297 ----ESAEAALADGKADLVAFGRPFIANPDLVERLKN 329 (338)
T ss_pred ----HHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHhc
Confidence 334444444 49999884 2455566666654
No 370
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.40 E-value=3.9 Score=44.82 Aligned_cols=125 Identities=19% Similarity=0.181 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHH
Q 012815 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~Ra 246 (456)
+.+..+.|.+.++.-+-+-|.. |+.-| +++..+...+...-..+.+..| .++| +|.- +.+++++|+
T Consensus 182 l~eAl~lM~e~~i~~LPVVD~~-----g~LvG--IIT~~Dilk~~~~P~a~~d~~g-rL~V-~~av-----~~~~~~~ra 247 (502)
T PRK07107 182 LKEANDIIWDHKLNTLPIVDKN-----GNLVY--LVFRKDYDSHKENPLELLDSSK-RYVV-GAGI-----NTRDYAERV 247 (502)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-----CeEEE--EEEhHHHHhcccChhhhhhhcc-Ceee-eecc-----ChhhHHHHH
Confidence 4556677888888888776642 12211 5555555443221112222222 3433 3322 235689999
Q ss_pred HHhHhcCCCEEEeccCCC-----HHHHHHHHHhCCCCceeeeeeccCCCCCCCC---HHHHHhcCCCEEeccch
Q 012815 247 RAFADAGADVLFIDALAS-----KEEMKAFCEISPLVPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLS 312 (456)
Q Consensus 247 kAy~eAGAD~Ifie~~~s-----~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt---~~eL~elGv~~Vs~p~~ 312 (456)
+++.++|+|.|+|...+. .+.++++.+.+|. + +.+..+ . -+| .++|.++|+..|..+++
T Consensus 248 ~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~-~--~~V~aG-n---V~t~e~a~~li~aGAd~I~vg~g 314 (502)
T PRK07107 248 PALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGD-S--VKVGAG-N---VVDREGFRYLAEAGADFVKVGIG 314 (502)
T ss_pred HHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCC-C--ceEEec-c---ccCHHHHHHHHHcCCCEEEECCC
Confidence 999999999999974332 4567777777662 2 222221 1 244 46699999999876544
No 371
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=87.38 E-value=31 Score=34.16 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHH
Q 012815 139 VDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA 217 (456)
Q Consensus 139 l~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~A 217 (456)
+..++.|+... +.+|++|+-+-=.+ .--+++..++||+-+.+=. |.| ...|+.+.+.
T Consensus 44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G----~~e~~ma~~aGAd~~tV~g------~A~------------~~TI~~~i~~ 101 (217)
T COG0269 44 MRAVRALRELFPDKIIVADLKTADAG----AIEARMAFEAGADWVTVLG------AAD------------DATIKKAIKV 101 (217)
T ss_pred HHHHHHHHHHCCCCeEEeeeeecchh----HHHHHHHHHcCCCEEEEEe------cCC------------HHHHHHHHHH
Q ss_pred hHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec--------cCCC-HHHHHHHHHhCCCCceeeeeeccC
Q 012815 218 RKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID--------ALAS-KEEMKAFCEISPLVPKMANMLEGG 288 (456)
Q Consensus 218 r~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie--------~~~s-~eei~~i~~~v~~vP~~~N~~~~~ 288 (456)
+++.|....+ |-.....+ ..|++-+.++|.|.+++| +..- .+.+..+.+..+ .-+-+.-.|
T Consensus 102 A~~~~~~v~i----Dl~~~~~~---~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~---~g~~vAVaG 171 (217)
T COG0269 102 AKEYGKEVQI----DLIGVWDP---EQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSD---LGAKVAVAG 171 (217)
T ss_pred HHHcCCeEEE----EeecCCCH---HHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhc---cCceEEEec
Q ss_pred CCCCCCCHHHHHhcCCCEEeccchHHHH--HHHHHHHHHHHHHc
Q 012815 289 GKTPILNPLELEELGFKLVAYPLSLIGV--SVRAMQDALTAIKG 330 (456)
Q Consensus 289 g~tp~lt~~eL~elGv~~Vs~p~~ll~a--a~~A~~~~l~~i~~ 330 (456)
|-+| =+..++..+|+..++.|...-.+ -.++.++..++|..
T Consensus 172 GI~~-~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~ 214 (217)
T COG0269 172 GITP-EDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDK 214 (217)
T ss_pred CCCH-HHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHhc
No 372
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=87.28 E-value=8.1 Score=39.92 Aligned_cols=88 Identities=20% Similarity=0.138 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCcEEEec-chHHhhhh-cccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCC---CHHHHHHHHHHH
Q 012815 100 LSAKLVEKSGFSFCFTS-GFSISAAR-LALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG---NAMNVKRTVKGY 174 (456)
Q Consensus 100 lSArl~e~aGfdAI~vS-G~avSas~-lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG---~~~nv~rtVk~l 174 (456)
-.|++++++|||+|=+= |.-..... -|+=....-..+-+.+.++++.+++++||.+=+--|+- ...+..+.++.+
T Consensus 81 ~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l 160 (333)
T PRK11815 81 EAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTV 160 (333)
T ss_pred HHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHH
Confidence 35677788899998654 32221111 11111111234455666777777788999874433332 235677888999
Q ss_pred HHhCccEEEeCCC
Q 012815 175 IKAGFAGIILEDQ 187 (456)
Q Consensus 175 ~~AGaaGI~IEDq 187 (456)
.++|++++.+-..
T Consensus 161 ~~aG~d~i~vh~R 173 (333)
T PRK11815 161 AEAGCDTFIVHAR 173 (333)
T ss_pred HHhCCCEEEEcCC
Confidence 9999999998753
No 373
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=87.28 E-value=16 Score=36.58 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=86.7
Q ss_pred HHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEE
Q 012815 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGI 182 (456)
Q Consensus 103 rl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI 182 (456)
+.+.++|++.|=+++ |.. -.++.+.++.+++....+-+ .++.. .-.+-++...++|+..|
T Consensus 29 ~~L~~~Gv~~IEvG~----------P~~----~~~~~~~~~~l~~~~~~~~v----~~~~r--~~~~di~~a~~~g~~~i 88 (262)
T cd07948 29 KALDAFGVDYIELTS----------PAA----SPQSRADCEAIAKLGLKAKI----LTHIR--CHMDDARIAVETGVDGV 88 (262)
T ss_pred HHHHHcCCCEEEEEC----------CCC----CHHHHHHHHHHHhCCCCCcE----EEEec--CCHHHHHHHHHcCcCEE
Confidence 446678999888774 211 14455566666543211111 11111 12334667778999999
Q ss_pred EeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec--
Q 012815 183 ILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID-- 260 (456)
Q Consensus 183 ~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie-- 260 (456)
+|--.+++ .|...+.-.+.+|.++++..+++..++.|-.+.+.. .|+.. ...+..++-++.+.++|||.|.+.
T Consensus 89 ~i~~~~S~---~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~-eda~r-~~~~~l~~~~~~~~~~g~~~i~l~Dt 163 (262)
T cd07948 89 DLVFGTSP---FLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS-EDSFR-SDLVDLLRVYRAVDKLGVNRVGIADT 163 (262)
T ss_pred EEEEecCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE-EeeCC-CCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 99765432 122222234578888888888877766553333333 33432 245677777888889999999875
Q ss_pred -cCCCHHHHHHHHHh
Q 012815 261 -ALASKEEMKAFCEI 274 (456)
Q Consensus 261 -~~~s~eei~~i~~~ 274 (456)
|.-+++++.++.+.
T Consensus 164 ~G~~~P~~v~~~~~~ 178 (262)
T cd07948 164 VGIATPRQVYELVRT 178 (262)
T ss_pred CCCCCHHHHHHHHHH
Confidence 34566677766654
No 374
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=87.26 E-value=34 Score=34.20 Aligned_cols=182 Identities=20% Similarity=0.161 Sum_probs=106.8
Q ss_pred eeecccCChHHH-HHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCH-HHH
Q 012815 91 HQGPACFDALSA-KLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNA-MNV 167 (456)
Q Consensus 91 lv~pgayDalSA-rl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~-~nv 167 (456)
++..-..+--.+ .++++.+=...++- |+-+-.. +-|+ .++.+.+... +|+.|+=.+ +. ..+
T Consensus 15 ivaLD~~~~~~~~~~~~~~~~~~~~~Kvg~~l~~~--~g~~-----------~~~el~~~~~-~VflDlK~~--DIpnT~ 78 (240)
T COG0284 15 IVALDVPTEEEALAFVDKLGPTVDFVKVGKPLVAF--FGAD-----------ILEELKARGK-KVFLDLKLA--DIPNTV 78 (240)
T ss_pred EEEECCCCHHHHHHHHHHhhccccEEEEchHHHHh--ccHH-----------HHHHHHHhCC-ceEEeeecc--cchHHH
Confidence 555555555555 44555542333333 5555421 2222 3344443333 999998765 63 456
Q ss_pred HHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhc-----------
Q 012815 168 KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA----------- 236 (456)
Q Consensus 168 ~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~----------- 236 (456)
...++...+.|++++++---. | .+-+++++++....+. +|++.|--...
T Consensus 79 ~~~~~~~~~~g~d~vtvH~~~---------G---------~~~~~~~~e~~~~~~~--~vl~vT~lts~~~~~~~~~~~~ 138 (240)
T COG0284 79 ALAAKAAADLGADAVTVHAFG---------G---------FDMLRAAKEALEAGGP--FVLAVTSLTSMGELQLAELGIN 138 (240)
T ss_pred HHHHHHhhhcCCcEEEEeCcC---------C---------HHHHHHHHHHHhhcCc--eEEEEEeCCCchhhhhhhcccc
Confidence 677788889999999984321 2 2356777777776543 77887754221
Q ss_pred -ccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCC---------CCCHHHHHhcCCCE
Q 012815 237 -LSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP---------ILNPLELEELGFKL 306 (456)
Q Consensus 237 -~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp---------~lt~~eL~elGv~~ 306 (456)
..-+..++.++.-.++|-|.++.- .++.+++.+..+ |.+.-++ ||-.| ..++.+-...|...
T Consensus 139 ~~~~~~v~~~a~~~~~~G~dgvv~~----~~e~~~ir~~~g--~~~~ilt--PGIg~~~~~gdQ~~~~t~~~A~~~Gad~ 210 (240)
T COG0284 139 SSLEEQVLRLAKLAGEAGLDGVVCS----AEEVAAIREILG--PDFLILT--PGIGAGSQGGDQGRVMTPGEAVRAGADY 210 (240)
T ss_pred chHHHHHHHHHHHhccCCceEEEcC----HHHHHHHHHhcC--CCcEEEC--CCcCcCcCCCCcccccCHHHHHhcCCCE
Confidence 113556677888888899988863 356666655543 1122122 22222 45677777789888
Q ss_pred EeccchHHHH
Q 012815 307 VAYPLSLIGV 316 (456)
Q Consensus 307 Vs~p~~ll~a 316 (456)
++.|-..+.+
T Consensus 211 ivVGR~I~~a 220 (240)
T COG0284 211 IVVGRPITQA 220 (240)
T ss_pred EEEChhhhcC
Confidence 8888776654
No 375
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=87.23 E-value=31 Score=36.16 Aligned_cols=150 Identities=13% Similarity=0.057 Sum_probs=81.5
Q ss_pred HHHHHHHHhCCcEEEec---chHHhhhhc----ccCCCCCCCHHHH----HHHHHHHHhccC-CcEEEe---------CC
Q 012815 100 LSAKLVEKSGFSFCFTS---GFSISAARL----ALPDTGFISYGEM----VDQGQLITQAVS-IPVIGD---------GD 158 (456)
Q Consensus 100 lSArl~e~aGfdAI~vS---G~avSas~l----G~PD~~~lt~~Em----l~~~r~I~ra~~-iPVIaD---------~D 158 (456)
-+|+.+.++|||+|-+- ||-++-..- =..|.=-=+++.- ++.+++|.++++ -+|.+= .+
T Consensus 163 ~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~ 242 (362)
T PRK10605 163 QAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVD 242 (362)
T ss_pred HHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCC
Confidence 57899999999999886 444432110 1233101155532 233444444442 133331 23
Q ss_pred CCCCCHHH-HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcc
Q 012815 159 NGYGNAMN-VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL 237 (456)
Q Consensus 159 tGYG~~~n-v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~ 237 (456)
.|+ +.++ ..+.++.++++|++-|++-... ..+..-.+ .++.++|+.++ +..+++.++.+.
T Consensus 243 ~G~-~~~e~~~~~~~~L~~~giD~i~vs~~~-------~~~~~~~~-~~~~~~ik~~~------~~pv~~~G~~~~---- 303 (362)
T PRK10605 243 NGP-NEEADALYLIEQLGKRGIAYLHMSEPD-------WAGGEPYS-DAFREKVRARF------HGVIIGAGAYTA---- 303 (362)
T ss_pred CCC-CHHHHHHHHHHHHHHcCCCEEEecccc-------ccCCcccc-HHHHHHHHHHC------CCCEEEeCCCCH----
Confidence 333 3445 6888999999999999995431 11111222 34555555442 234555565432
Q ss_pred cHHHHHHHHHHhHhcC-CCEEEec--cCCCHHHHHHHHHh
Q 012815 238 SLEESLRRSRAFADAG-ADVLFID--ALASKEEMKAFCEI 274 (456)
Q Consensus 238 ~ldeAI~RakAy~eAG-AD~Ifie--~~~s~eei~~i~~~ 274 (456)
+.+....+.| ||+|.+- .+.+++..+++.+.
T Consensus 304 ------~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~~g 337 (362)
T PRK10605 304 ------EKAETLIGKGLIDAVAFGRDYIANPDLVARLQRK 337 (362)
T ss_pred ------HHHHHHHHcCCCCEEEECHHhhhCccHHHHHhcC
Confidence 2244444445 9999884 35666777777664
No 376
>PRK13753 dihydropteroate synthase; Provisional
Probab=87.23 E-value=15 Score=37.51 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHH
Q 012815 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLE 240 (456)
Q Consensus 161 YG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ld 240 (456)
|-++..+.+.++.|++.||+-|=|-.+.. -.|...+|.+|=++||.-++++....+ ..| -.|.+..
T Consensus 21 ~~~~d~a~~~a~~m~~~GAdIIDIGgeST------rPga~~vs~eeE~~Rv~pvI~~l~~~~--~~I--SIDT~~~---- 86 (279)
T PRK13753 21 RLDPAGAVTAAIEMLRVGSDVVDVGPAAS------HPDARPVSPADEIRRIAPLLDALSDQM--HRV--SIDSFQP---- 86 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCC------CCCCCcCCHHHHHHHHHHHHHHHHhCC--CcE--EEECCCH----
Confidence 34567888889999999999999966641 134456778777888887777766432 222 3455543
Q ss_pred HHHHHHHHhHhcCCCEEE-eccCCCHHHHHHHHHhCCCCceeeee
Q 012815 241 ESLRRSRAFADAGADVLF-IDALASKEEMKAFCEISPLVPKMANM 284 (456)
Q Consensus 241 eAI~RakAy~eAGAD~If-ie~~~s~eei~~i~~~v~~vP~~~N~ 284 (456)
+-+++..++|||+|- |.+..+ +++.+++.... +|+.+..
T Consensus 87 ---~va~~al~aGadiINDVsg~~d-~~~~~vva~~~-~~vVlmH 126 (279)
T PRK13753 87 ---ETQRYALKRGVGYLNDIQGFPD-PALYPDIAEAD-CRLVVMH 126 (279)
T ss_pred ---HHHHHHHHcCCCEEEeCCCCCc-hHHHHHHHHcC-CCEEEEe
Confidence 224455589999885 456654 45566665554 5665543
No 377
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=87.21 E-value=14 Score=37.09 Aligned_cols=159 Identities=18% Similarity=0.255 Sum_probs=103.2
Q ss_pred HHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCC
Q 012815 80 SLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN 159 (456)
Q Consensus 80 ~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~Dt 159 (456)
.|+.+-.-++|+ --|+...+.|.|-+-.= -++||..| .+-|++.++++++.+.+|+.+=
T Consensus 22 ~F~~lrd~GDpV--------elA~~Y~e~GADElvFl--DItAs~~g--------r~~~~~vv~r~A~~vfiPltVG--- 80 (256)
T COG0107 22 NFKNLRDAGDPV--------ELAKRYNEEGADELVFL--DITASSEG--------RETMLDVVERVAEQVFIPLTVG--- 80 (256)
T ss_pred cccchhhcCChH--------HHHHHHHHcCCCeEEEE--eccccccc--------chhHHHHHHHHHhhceeeeEec---
Confidence 355555555554 34677888899854332 23333334 4567888899999999999882
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE---ecc--hh
Q 012815 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA---RTD--SR 234 (456)
Q Consensus 160 GYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA---RTD--A~ 234 (456)
|+. ...+.++++..+||+=|.|.-.. +..++ ++.+ +++..|..++|++ |-+ ..
T Consensus 81 --GGI-~s~eD~~~ll~aGADKVSINsaA------------v~~p~-lI~~------~a~~FGsQciVvaIDakr~~~g~ 138 (256)
T COG0107 81 --GGI-RSVEDARKLLRAGADKVSINSAA------------VKDPE-LITE------AADRFGSQCIVVAIDAKRVPDGE 138 (256)
T ss_pred --CCc-CCHHHHHHHHHcCCCeeeeChhH------------hcChH-HHHH------HHHHhCCceEEEEEEeeeccCCC
Confidence 222 22445568889999888875432 33443 3333 3455677777764 222 11
Q ss_pred ----h--------cccHHHHHHHHHHhHhcCCCEEEeccC--------CCHHHHHHHHHhCCCCceeee
Q 012815 235 ----Q--------ALSLEESLRRSRAFADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 235 ----~--------~~~ldeAI~RakAy~eAGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N 283 (456)
. ..++ ++++-++.+++.||==|++.++ -+.+..+.+++.+. +|+.++
T Consensus 139 ~~~~~v~~~gGr~~t~~-d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~-iPvIAS 205 (256)
T COG0107 139 NGWYEVFTHGGREDTGL-DAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAVN-IPVIAS 205 (256)
T ss_pred CCcEEEEecCCCcCCCc-CHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhCC-CCEEec
Confidence 0 1233 5789999999999999998775 26788999999887 887754
No 378
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=87.20 E-value=17 Score=38.20 Aligned_cols=232 Identities=15% Similarity=0.180 Sum_probs=133.3
Q ss_pred HHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEE
Q 012815 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGI 182 (456)
Q Consensus 103 rl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI 182 (456)
+-++++|++.+=++ .||. +-....+.|.+.+++|||||+-+-| +.+-..+++|++.+
T Consensus 41 ~~L~~aGceiVRva----------vp~~------~~A~al~~I~~~~~iPlVADIHFd~-------~lAl~a~~~g~dki 97 (346)
T TIGR00612 41 RALEEAGCDIVRVT----------VPDR------ESAAAFEAIKEGTNVPLVADIHFDY-------RLAALAMAKGVAKV 97 (346)
T ss_pred HHHHHcCCCEEEEc----------CCCH------HHHHhHHHHHhCCCCCEEEeeCCCc-------HHHHHHHHhccCeE
Confidence 34678899988765 3332 2335567788899999999998764 34445567899999
Q ss_pred EeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhh------------cccHHHHHHHHHHhH
Q 012815 183 ILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ------------ALSLEESLRRSRAFA 250 (456)
Q Consensus 183 ~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~------------~~~ldeAI~RakAy~ 250 (456)
.|.-+ +.+. -+|++..++++++.+..+.|=.-.-++. ..-.+.|++-++.+.
T Consensus 98 RINPG-------Nig~---------~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le 161 (346)
T TIGR00612 98 RINPG-------NIGF---------RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILE 161 (346)
T ss_pred EECCC-------CCCC---------HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99775 4432 2466666666665555555544333321 113688999999999
Q ss_pred hcCCCEEEeccC-----CCHHHHHHHHHhCCCCceeeeeeccCCCCCCC-----CHHHHHhcCCC---EEeccchHHHHH
Q 012815 251 DAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPIL-----NPLELEELGFK---LVAYPLSLIGVS 317 (456)
Q Consensus 251 eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~l-----t~~eL~elGv~---~Vs~p~~ll~aa 317 (456)
+.|=+=|.+-.. ...+..+.+++..+ +|+=+-++|.|...... -..-|-.-|.- |||..... -.=
T Consensus 162 ~~~F~diviS~KsSdv~~~i~ayr~la~~~d-yPLHlGVTEAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~dP-~~E 239 (346)
T TIGR00612 162 KLGFRNVVLSMKASDVAETVAAYRLLAERSD-YPLHLGVTEAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTDDP-THE 239 (346)
T ss_pred HCCCCcEEEEEEcCCHHHHHHHHHHHHhhCC-CCceeccccCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCCCc-HHH
Confidence 999877666432 12344555666665 88888888874322111 12334444432 55554333 112
Q ss_pred HHHHHHHHHHH--HcCCC---CCCC--C-CCCHHHHHHhcCcccHHHHHHcccccccCcc--------ccCCCCCCCCCc
Q 012815 318 VRAMQDALTAI--KGGRI---PSPG--S-MPSFQEIKETLGFNTYYEEEKRYATSMRRLS--------SENGGSRDAFSG 381 (456)
Q Consensus 318 ~~A~~~~l~~i--~~g~~---~~~~--~-~~~~~e~~~lvg~~~~~~~e~~y~~~~~~~~--------~~~~~~~~~~~~ 381 (456)
....++.|+++ +..+. ..|. + ..+..+ -..+.|+++...+.++. .+..+.|+.=-|
T Consensus 240 V~va~~IL~slglr~~g~~iiSCPtCGR~~~dl~~--------~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiG 311 (346)
T TIGR00612 240 VPVAFEILQSLGLRARGVEIVACPSCGRTGFDVEK--------VVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIG 311 (346)
T ss_pred HHHHHHHHHHcCCCcCCCeEEECCCCCCcCCCHHH--------HHHHHHHHHhcCCCCCEEEEECceecCCchhhccCee
Confidence 33344555555 22221 1221 1 112222 25667777776666553 255667776666
Q ss_pred ce
Q 012815 382 IW 383 (456)
Q Consensus 382 ~~ 383 (456)
||
T Consensus 312 Ia 313 (346)
T TIGR00612 312 IS 313 (346)
T ss_pred ee
Confidence 55
No 379
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=87.17 E-value=17 Score=37.70 Aligned_cols=133 Identities=12% Similarity=0.030 Sum_probs=83.7
Q ss_pred eecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCC-CHHHHHHH
Q 012815 92 QGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRT 170 (456)
Q Consensus 92 v~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG-~~~nv~rt 170 (456)
..||-++.-..+.+.++|++.+-+.-... + .+...++++.+ +..+.-+.+-....+. +++.+.+.
T Consensus 83 l~pg~~~~~dl~~a~~~gvd~iri~~~~~--------e-----~d~~~~~i~~a-k~~G~~v~~~l~~s~~~~~e~l~~~ 148 (333)
T TIGR03217 83 LLPGIGTVHDLKAAYDAGARTVRVATHCT--------E-----ADVSEQHIGMA-RELGMDTVGFLMMSHMTPPEKLAEQ 148 (333)
T ss_pred eccCccCHHHHHHHHHCCCCEEEEEeccc--------h-----HHHHHHHHHHH-HHcCCeEEEEEEcccCCCHHHHHHH
Confidence 44776777777888889999888653210 0 02233444433 3334555554444443 57889999
Q ss_pred HHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhH
Q 012815 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (456)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~ 250 (456)
++.++++|+..|.|-|.. |. ..+++..++++++++.. +++.-|---+ -+.+--++.-+.+..
T Consensus 149 a~~~~~~Ga~~i~i~DT~-----G~------~~P~~v~~~v~~l~~~l---~~~i~ig~H~----HnnlGla~ANslaAi 210 (333)
T TIGR03217 149 AKLMESYGADCVYIVDSA-----GA------MLPDDVRDRVRALKAVL---KPETQVGFHA----HHNLSLAVANSIAAI 210 (333)
T ss_pred HHHHHhcCCCEEEEccCC-----CC------CCHHHHHHHHHHHHHhC---CCCceEEEEe----CCCCchHHHHHHHHH
Confidence 999999999999999985 43 34567888888777553 2333222221 122334567777788
Q ss_pred hcCCCE
Q 012815 251 DAGADV 256 (456)
Q Consensus 251 eAGAD~ 256 (456)
++||+.
T Consensus 211 ~aGa~~ 216 (333)
T TIGR03217 211 EAGATR 216 (333)
T ss_pred HhCCCE
Confidence 999997
No 380
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=87.17 E-value=3.1 Score=41.36 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=68.5
Q ss_pred ccCCCCccccCHHHHHHHHHHHHHHhHh-hCCCeEEEEecch------hhcc---cH-HHHHHHHHHhHhcCCCEEEecc
Q 012815 193 CGHTRGRKVVSREEAVMRIKAAVDARKE-SGSDIVIVARTDS------RQAL---SL-EESLRRSRAFADAGADVLFIDA 261 (456)
Q Consensus 193 CGH~~gk~lvp~ee~v~kI~AA~~Ar~~-~G~dfvIiARTDA------~~~~---~l-deAI~RakAy~eAGAD~Ifie~ 261 (456)
-|-.+|----++..+.+||..++.++.. .....+++---|- .... .. +..++-|+.++++|||+|.+++
T Consensus 4 iGilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~ 83 (230)
T COG1794 4 IGILGGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERAGADFIVLPT 83 (230)
T ss_pred eEeccCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3445554445677888888888877652 1122233222221 1111 11 3346678999999999999998
Q ss_pred CCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEec
Q 012815 262 LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (456)
Q Consensus 262 ~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~ 309 (456)
-+-...+.++-+.++ +|. +++.+. |.+++...|+++|..
T Consensus 84 NT~H~~~d~iq~~~~-iPl-lhIida-------Ta~~ik~~g~kkvgL 122 (230)
T COG1794 84 NTMHKVADDIQKAVG-IPL-LHIIDA-------TAKAIKAAGAKKVGL 122 (230)
T ss_pred CcHHHHHHHHHHhcC-CCe-ehHHHH-------HHHHHHhcCCceeEE
Confidence 554456666666666 774 566543 789999999999865
No 381
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.91 E-value=3 Score=44.68 Aligned_cols=66 Identities=24% Similarity=0.308 Sum_probs=46.1
Q ss_pred HHHHHHHHHhHhcCCCEEEeccCC--C---HHHHHHHHHhCCCCceee-eeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 240 EESLRRSRAFADAGADVLFIDALA--S---KEEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~~--s---~eei~~i~~~v~~vP~~~-N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
++.++|+.+..+||||+|+++.-. + .+.++++.+.+|.+++++ |+. + .-....|.++|+..|.++.
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~-----T-~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIV-----T-KEAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecC-----C-HHHHHHHHHcCCCEEEECC
Confidence 467899999999999999987632 2 245666666776655543 332 1 1235779999999988764
No 382
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=86.89 E-value=3 Score=42.42 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=45.0
Q ss_pred HHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCC-CceeeeeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
+++++.+.++|||.|.++... .+++++.++.+.. -|... +...||-+ .-+..++++.|+..++.+.
T Consensus 198 leea~ea~~~GaDiI~lDn~~-~e~l~~~v~~l~~~~~~~~-leasGGI~-~~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 198 IEQALTVLQASPDILQLDKFT-PQQLHHLHERLKFFDHIPT-LAAAGGIN-PENIADYIEAGIDLFITSA 264 (277)
T ss_pred HHHHHHHHHcCcCEEEECCCC-HHHHHHHHHHHhccCCCEE-EEEECCCC-HHHHHHHHhcCCCEEEeCc
Confidence 567788889999999999864 5788888776521 12211 12223432 2456889999999999875
No 383
>PLN02826 dihydroorotate dehydrogenase
Probab=86.85 E-value=16 Score=39.14 Aligned_cols=129 Identities=9% Similarity=0.126 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHh------ccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCC---------CC--CccCC
Q 012815 134 SYGEMVDQGQLITQ------AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVS---------PK--GCGHT 196 (456)
Q Consensus 134 t~~Eml~~~r~I~r------a~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~---------pK--~CGH~ 196 (456)
.+.+++..++...+ ...+||++=+---. +..++...++.++++|++||.+-..+. +. ..|-.
T Consensus 240 ~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl-~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGl 318 (409)
T PLN02826 240 QLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDL-SKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGL 318 (409)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCceEEecCCCC-CHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCc
Confidence 34566666655543 24699999652211 233567777888899999998876431 11 12334
Q ss_pred CCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEecc---CCCHHHHHHHHH
Q 012815 197 RGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA---LASKEEMKAFCE 273 (456)
Q Consensus 197 ~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~---~~s~eei~~i~~ 273 (456)
.|+++.|.. .+.|+.+.++ .+.++-|++=.--... +.+..|..|||++|.+-. ......++++.+
T Consensus 319 SG~pl~~~s--l~~v~~l~~~---~~~~ipIIgvGGI~sg-------~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~ 386 (409)
T PLN02826 319 SGKPLFDLS--TEVLREMYRL---TRGKIPLVGCGGVSSG-------EDAYKKIRAGASLVQLYTAFAYEGPALIPRIKA 386 (409)
T ss_pred CCccccHHH--HHHHHHHHHH---hCCCCcEEEECCCCCH-------HHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHH
Confidence 567777663 3444444333 2345667765433221 446667779999998754 123455666655
Q ss_pred hC
Q 012815 274 IS 275 (456)
Q Consensus 274 ~v 275 (456)
++
T Consensus 387 eL 388 (409)
T PLN02826 387 EL 388 (409)
T ss_pred HH
Confidence 53
No 384
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=86.84 E-value=18 Score=37.70 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=99.1
Q ss_pred eecccCChHHHHHH------HHhCCcEEEecchHHhhhhcccCC-CCCCCHH---HHHHHHHHHHhcc-CCcEEEeC---
Q 012815 92 QGPACFDALSAKLV------EKSGFSFCFTSGFSISAARLALPD-TGFISYG---EMVDQGQLITQAV-SIPVIGDG--- 157 (456)
Q Consensus 92 v~pgayDalSArl~------e~aGfdAI~vSG~avSas~lG~PD-~~~lt~~---Eml~~~r~I~ra~-~iPVIaD~--- 157 (456)
.|||.|-..--+++ .+.|.+++.+=|.. . .-| .+.-.++ =+...++.|.+.. ++-||+|.
T Consensus 51 smPg~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~---~---~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc 124 (322)
T PRK13384 51 TLPGISRLPESALADEIERLYALGIRYVMPFGIS---H---HKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFC 124 (322)
T ss_pred CCCCcceECHHHHHHHHHHHHHcCCCEEEEeCCC---C---CCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecc
Confidence 57777755433333 34699988865431 0 112 1222222 2445667777765 57788884
Q ss_pred ---CCCC------C---CHHHHH---HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhC
Q 012815 158 ---DNGY------G---NAMNVK---RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (456)
Q Consensus 158 ---DtGY------G---~~~nv~---rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G 222 (456)
++|+ | |.+.+. +.+-.+.+|||+-|-=-|- ++| ||.|++++-++.|
T Consensus 125 ~YT~hGHcGil~~g~i~ND~Tl~~L~~~Als~A~AGADiVAPSdM--------MDG-----------rV~aIR~aLd~~g 185 (322)
T PRK13384 125 EYTDHGHCGVLHNDEVDNDATVENLVKQSVTAAKAGADMLAPSAM--------MDG-----------QVKAIRQGLDAAG 185 (322)
T ss_pred cCCCCCceeeccCCcCccHHHHHHHHHHHHHHHHcCCCeEecccc--------ccc-----------HHHHHHHHHHHCC
Confidence 3332 1 333333 4444566899987765443 332 4555555544433
Q ss_pred -CCeEEEEecchhh-------------------------cccHHHHHHHHHHhHhcCCCEEEe-ccCCCHHHHHHHHHhC
Q 012815 223 -SDIVIVARTDSRQ-------------------------ALSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFCEIS 275 (456)
Q Consensus 223 -~dfvIiARTDA~~-------------------------~~~ldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i~~~v 275 (456)
.+.-|.+-+--++ ...-.||++.+..=.+-|||+|+| |+++..+.++++.+.+
T Consensus 186 ~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~~ 265 (322)
T PRK13384 186 FEHVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGTPYLDVLSRLRQET 265 (322)
T ss_pred CCCCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCchHHHHHHHHHhcc
Confidence 2445554443221 012578999999999999999999 7899999999999887
Q ss_pred CCCceeeee
Q 012815 276 PLVPKMANM 284 (456)
Q Consensus 276 ~~vP~~~N~ 284 (456)
. +|+.+=.
T Consensus 266 ~-lPvaaYq 273 (322)
T PRK13384 266 H-LPLAAYQ 273 (322)
T ss_pred C-CCEEEEE
Confidence 5 7875433
No 385
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=86.83 E-value=14 Score=34.82 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 288 GGKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 288 ~g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
||-++ -+..++.+.|+..|+.+..++.+
T Consensus 177 GGI~~-~nv~~l~~~GaD~vvvgSai~~~ 204 (220)
T PRK05581 177 GGINA-DNIKECAEAGADVFVAGSAVFGA 204 (220)
T ss_pred CCCCH-HHHHHHHHcCCCEEEEChhhhCC
Confidence 46555 36788888999999999887753
No 386
>PRK07534 methionine synthase I; Validated
Probab=86.81 E-value=9.1 Score=39.84 Aligned_cols=120 Identities=17% Similarity=0.292 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHH----HHhHhhCCCeEEEEecchhhc--
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV----DARKESGSDIVIVARTDSRQA-- 236 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~----~Ar~~~G~dfvIiARTDA~~~-- 236 (456)
+++.|.+.=+.|++|||.-|. -.... -.+-+.. .--..+++.+-+++++ +|+++.+.+.+|.+=--....
T Consensus 43 ~Pe~V~~vH~~Yl~AGAdiI~-TnTy~-as~~~l~--~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l 118 (336)
T PRK07534 43 HPDNITALHQGFVDAGSDIIL-TNSFG-GTAARLK--LHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIM 118 (336)
T ss_pred CHHHHHHHHHHHHHhcCCEEE-ecCcc-cCHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCcccc
Confidence 456666666889999987765 33321 1110110 0002233333344444 343322223444443222111
Q ss_pred -----ccHH----HHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCC--CCceeeeeec
Q 012815 237 -----LSLE----ESLRRSRAFADAGADVLFIDALASKEEMKAFCEISP--LVPKMANMLE 286 (456)
Q Consensus 237 -----~~ld----eAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~--~vP~~~N~~~ 286 (456)
...+ .--++++++.++|+|++++|.+++.+|++.+.+... .+|+++.+.-
T Consensus 119 ~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~~~Pv~vSft~ 179 (336)
T PRK07534 119 EPMGALTHALAVEAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLAGMPWCGTMSF 179 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 1222 233568889999999999999999999998876432 4788877653
No 387
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=86.73 E-value=41 Score=35.41 Aligned_cols=138 Identities=16% Similarity=0.059 Sum_probs=82.9
Q ss_pred CChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHh---ccCCcEEEeC------CC-CCCCHH
Q 012815 97 FDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPVIGDG------DN-GYGNAM 165 (456)
Q Consensus 97 yDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~r---a~~iPVIaD~------Dt-GYG~~~ 165 (456)
+..--...+-++|.+.|.+. +..-. +-.-- ...|.+|.++.++.+.+ ..++.|.+-+ |+ |.-++.
T Consensus 122 ~n~~die~A~~~g~~~v~i~~s~Sd~---h~~~n-~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~ 197 (347)
T PLN02746 122 PNLKGFEAAIAAGAKEVAVFASASES---FSKSN-INCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPS 197 (347)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHH---HHHHH-hCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHH
Confidence 35555566677899876655 21111 11111 23678888887666554 3457774333 22 222567
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHH
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~R 245 (456)
.+.+.++.+.++||.-|.|-|.+ |. ..+.+..+.++++++.... ..+-+=.-. .+--|+.-
T Consensus 198 ~l~~~~~~~~~~Gad~I~l~DT~-----G~------a~P~~v~~lv~~l~~~~~~--~~i~~H~Hn------d~GlA~AN 258 (347)
T PLN02746 198 KVAYVAKELYDMGCYEISLGDTI-----GV------GTPGTVVPMLEAVMAVVPV--DKLAVHFHD------TYGQALAN 258 (347)
T ss_pred HHHHHHHHHHHcCCCEEEecCCc-----CC------cCHHHHHHHHHHHHHhCCC--CeEEEEECC------CCChHHHH
Confidence 89999999999999999999986 32 3345666777766644210 112222222 22345677
Q ss_pred HHHhHhcCCCEE
Q 012815 246 SRAFADAGADVL 257 (456)
Q Consensus 246 akAy~eAGAD~I 257 (456)
+.+..+|||+.+
T Consensus 259 ~lAA~~aGa~~v 270 (347)
T PLN02746 259 ILVSLQMGISTV 270 (347)
T ss_pred HHHHHHhCCCEE
Confidence 778889999975
No 388
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.70 E-value=4 Score=41.41 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=45.5
Q ss_pred HHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCC-CceeeeeeccCCCCCCCCHHHHHhcCCCEEeccch
Q 012815 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ 312 (456)
++.++..+++|||.|.++.+ +.+++++.++.... .|... +...||-+| -+..++.+.|+..++.|..
T Consensus 192 leea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~-ieAsGgIt~-~ni~~ya~~GvD~IsvG~l 259 (273)
T PRK05848 192 LEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVL-LEASGNITL-ENINAYAKSGVDAISSGSL 259 (273)
T ss_pred HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeE-EEEECCCCH-HHHHHHHHcCCCEEEeChh
Confidence 35566778899999999886 56888888875331 23221 122234332 3568899999999999874
No 389
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=86.67 E-value=38 Score=34.12 Aligned_cols=169 Identities=15% Similarity=0.202 Sum_probs=101.3
Q ss_pred CChH-HHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012815 97 FDAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (456)
Q Consensus 97 yDal-SArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~ 175 (456)
+|+. -|+..+++|+.+|- ++--|..-.-+++++ +.+++.+++||+.- +...++.+++++.
T Consensus 61 ~d~~~~A~~y~~~GA~aIS---------VlTe~~~F~Gs~~~l----~~v~~~v~~PvL~K--DFIid~~QI~ea~---- 121 (247)
T PRK13957 61 YHPVQIAKTYETLGASAIS---------VLTDQSYFGGSLEDL----KSVSSELKIPVLRK--DFILDEIQIREAR---- 121 (247)
T ss_pred CCHHHHHHHHHHCCCcEEE---------EEcCCCcCCCCHHHH----HHHHHhcCCCEEec--cccCCHHHHHHHH----
Confidence 4443 36677888988771 333444333445443 44556678999863 3446777777553
Q ss_pred HhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCC
Q 012815 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGAD 255 (456)
Q Consensus 176 ~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD 255 (456)
.+||++|.+==. +.+.+ +++...+.+..+|-+.+|=.+|..+ ++| ..++||+
T Consensus 122 ~~GADavLLI~~-------------~L~~~----~l~~l~~~a~~lGle~LVEVh~~~E--------l~~---a~~~ga~ 173 (247)
T PRK13957 122 AFGASAILLIVR-------------ILTPS----QIKSFLKHASSLGMDVLVEVHTEDE--------AKL---ALDCGAE 173 (247)
T ss_pred HcCCCEEEeEHh-------------hCCHH----HHHHHHHHHHHcCCceEEEECCHHH--------HHH---HHhCCCC
Confidence 389999977322 23333 3444455556677778887777553 233 4568999
Q ss_pred EEEeccC------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 256 VLFIDAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 256 ~Ifie~~------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
.|-|..- .+.+...++...+|. -.+-+.+.|=++| -....+.+. ++-+..|.+++.+
T Consensus 174 iiGINnRdL~t~~vd~~~~~~L~~~ip~--~~~~IsESGI~t~-~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 174 IIGINTRDLDTFQIHQNLVEEVAAFLPP--NIVKVGESGIESR-SDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred EEEEeCCCCccceECHHHHHHHHhhCCC--CcEEEEcCCCCCH-HHHHHHHHh-CCEEEECHHHhCC
Confidence 9998652 245666677766652 2233445532222 123445665 9999999888775
No 390
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=86.65 E-value=6.5 Score=37.01 Aligned_cols=67 Identities=22% Similarity=0.096 Sum_probs=43.7
Q ss_pred HHHHHHhHhcCCCEEEecc--CCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012815 243 LRRSRAFADAGADVLFIDA--LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~--~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll 314 (456)
.+.++...++|||.|-+.. ....+-++.+.+.+|.+|++ ..||-++ -...++.+.|+..|..+..++
T Consensus 107 ~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~----a~GGI~~-~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 107 PTEIMQALELGADIVKLFPAEAVGPAYIKALKGPFPQVRFM----PTGGVSL-DNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHHHHHHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEE----EeCCCCH-HHHHHHHHCCCEEEEEchhcc
Confidence 3445556789999986532 23456677776666545543 2345433 456889999999998887665
No 391
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=86.62 E-value=14 Score=38.26 Aligned_cols=139 Identities=18% Similarity=0.161 Sum_probs=83.5
Q ss_pred HHHHHhC-CcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 103 KLVEKSG-FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 103 rl~e~aG-fdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
+.+++++ ++++=+= |.-- .-|.++.+ ...+.+-..++++.+.+++||.+=+-- +..++...++.++++|++
T Consensus 116 ~~~~~~~~ad~ielNiScPn---t~g~~~l~-~~~e~l~~l~~~vk~~~~~Pv~vKl~P---~~~di~~iA~~~~~~g~D 188 (310)
T COG0167 116 RLLEEAGDADAIELNISCPN---TPGGRALG-QDPELLEKLLEAVKAATKVPVFVKLAP---NITDIDEIAKAAEEAGAD 188 (310)
T ss_pred HHHHhcCCCCEEEEEccCCC---CCChhhhc-cCHHHHHHHHHHHHhcccCceEEEeCC---CHHHHHHHHHHHHHcCCc
Confidence 4556677 6666553 2221 13444433 133334444556667778999998755 677888999999999999
Q ss_pred EEEeCCCCC-----------CCC---ccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHH
Q 012815 181 GIILEDQVS-----------PKG---CGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (456)
Q Consensus 181 GI~IEDq~~-----------pK~---CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~Ra 246 (456)
||.+--.+. |+- -|-..|+++.|.. .+-|+.. ++..++++-|++=--- ... +.|
T Consensus 189 gl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~a--l~~v~~l---~~~~~~~ipIIGvGGI---~s~----~DA 256 (310)
T COG0167 189 GLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIA--LRVVAEL---YKRLGGDIPIIGVGGI---ETG----EDA 256 (310)
T ss_pred EEEEEeeccccccccccccccccCcCCCCcCcccchHHH--HHHHHHH---HHhcCCCCcEEEecCc---CcH----HHH
Confidence 998766442 111 2334578887774 3333333 3334567888775322 223 345
Q ss_pred HHhHhcCCCEEEec
Q 012815 247 RAFADAGADVLFID 260 (456)
Q Consensus 247 kAy~eAGAD~Ifie 260 (456)
..+..|||++|=+-
T Consensus 257 ~E~i~aGA~~vQv~ 270 (310)
T COG0167 257 LEFILAGASAVQVG 270 (310)
T ss_pred HHHHHcCCchheee
Confidence 55677999987653
No 392
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=86.50 E-value=38 Score=35.48 Aligned_cols=154 Identities=16% Similarity=0.052 Sum_probs=91.0
Q ss_pred HHHHHHHHhCC--CceeecccCChHHHHHHHHhCCcEEEec-c--hHHhhhhcccCCCCCCCHHHHHHHHHHHH---hcc
Q 012815 78 AKSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTS-G--FSISAARLALPDTGFISYGEMVDQGQLIT---QAV 149 (456)
Q Consensus 78 a~~Lr~ll~~~--~~lv~pgayDalSArl~e~aGfdAI~vS-G--~avSas~lG~PD~~~lt~~Eml~~~r~I~---ra~ 149 (456)
.+.++.+.+.. ..+.+.+-...-..+.+.++|++.|.+. + -......++ .+.+|.++.+.... +..
T Consensus 51 ~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~~~~~~~~~~~~~i~~ak~~ 124 (363)
T TIGR02090 51 FEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK------KSRDEVLEKAVEAVEYAKEH 124 (363)
T ss_pred HHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHc
Confidence 34455555432 2333333334444566677899987775 2 111111123 46666666555433 344
Q ss_pred CCcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE
Q 012815 150 SIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV 228 (456)
Q Consensus 150 ~iPVIaD~DtGYG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi 228 (456)
+..|.+.+++.+- ++..+.+.++.+.++|+..|.|-|.. | ...++++.+.|+.+++.. +..|-
T Consensus 125 G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~-----G------~~~P~~v~~li~~l~~~~-----~~~l~ 188 (363)
T TIGR02090 125 GLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTV-----G------VLTPQKMEELIKKLKENV-----KLPIS 188 (363)
T ss_pred CCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-----C------ccCHHHHHHHHHHHhccc-----CceEE
Confidence 6778888776643 67789999999999999999999985 3 234456666666665432 22221
Q ss_pred EecchhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 229 ARTDSRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 229 ARTDA~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
.. .-+++--|+.-+.+..++||+.|
T Consensus 189 ~H----~Hnd~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 189 VH----CHNDFGLATANSIAGVKAGAEQV 213 (363)
T ss_pred EE----ecCCCChHHHHHHHHHHCCCCEE
Confidence 11 11223345677778889999875
No 393
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=86.49 E-value=29 Score=34.07 Aligned_cols=144 Identities=19% Similarity=0.164 Sum_probs=86.3
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE
Q 012815 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (456)
Q Consensus 150 ~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA 229 (456)
.+=.++++|.|+....+-..-++..++.||.-|-+==...--++|+ .++..+-|++.+++.. +.-+.||-
T Consensus 59 ~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~--------~~~v~~ei~~v~~~~~--~~~lKvIl 128 (221)
T PRK00507 59 KVCTVIGFPLGANTTAVKAFEAKDAIANGADEIDMVINIGALKSGD--------WDAVEADIRAVVEAAG--GAVLKVII 128 (221)
T ss_pred eEEEEecccCCCChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCC--------HHHHHHHHHHHHHhcC--CceEEEEe
Confidence 4556679999976556655666788889998886432221112232 3566777777777642 23455555
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCCEEEe-----ccCCCHHHHHHHHHhCCC-CceeeeeeccCCCCCCCCHHHHHhcC
Q 012815 230 RTDSRQALSLEESLRRSRAFADAGADVLFI-----DALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELG 303 (456)
Q Consensus 230 RTDA~~~~~ldeAI~RakAy~eAGAD~Ifi-----e~~~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~lt~~eL~elG 303 (456)
=|..+. -++..+-++...++|||.|-. .+-.+.+.++.+.+..++ +++ -..||-...-...++-++|
T Consensus 129 Et~~L~---~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~~~~I----KasGGIrt~~~a~~~i~aG 201 (221)
T PRK00507 129 ETCLLT---DEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGPRVGV----KASGGIRTLEDALAMIEAG 201 (221)
T ss_pred ecCcCC---HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceE----EeeCCcCCHHHHHHHHHcC
Confidence 454443 244455567788999995543 122567888888887652 222 2223322122357788899
Q ss_pred CCEEecc
Q 012815 304 FKLVAYP 310 (456)
Q Consensus 304 v~~Vs~p 310 (456)
..|+-..
T Consensus 202 A~riGtS 208 (221)
T PRK00507 202 ATRLGTS 208 (221)
T ss_pred cceEccC
Confidence 9988653
No 394
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=86.47 E-value=30 Score=32.87 Aligned_cols=149 Identities=19% Similarity=0.153 Sum_probs=81.9
Q ss_pred HHHHHHhccCCcEEEeCCCC-CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 141 QGQLITQAVSIPVIGDGDNG-YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtG-YG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
.++.|.+.+ ++++|...+ .+++ ....++.+.++||+.|.+ |.. .. .+ .+.++.+..+
T Consensus 46 ~v~~ir~~~--~i~~D~k~~di~~~--~~~~~~~~~~~gad~vtv----------h~e----~g-~~---~l~~~i~~~~ 103 (215)
T PRK13813 46 IIEELKRYA--PVIADLKVADIPNT--NRLICEAVFEAGAWGIIV----------HGF----TG-RD---SLKAVVEAAA 103 (215)
T ss_pred HHHHHHhcC--CEEEEeeccccHHH--HHHHHHHHHhCCCCEEEE----------cCc----CC-HH---HHHHHHHHHH
Confidence 344444433 788898887 5554 233346788899998877 321 01 11 2333333333
Q ss_pred hhCCCeEEEEecchh-hccc-HHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCC-CCH
Q 012815 220 ESGSDIVIVARTDSR-QALS-LEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPI-LNP 296 (456)
Q Consensus 220 ~~G~dfvIiARTDA~-~~~~-ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~-lt~ 296 (456)
+.|....+..-.... .... .+..-..++.-.+.|++...+.. ...+.++++.+..+. +..+ +. ||-.+. -+.
T Consensus 104 ~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~-~~~~~i~~l~~~~~~-~~~i--vd-gGI~~~g~~~ 178 (215)
T PRK13813 104 ESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPA-TRPERVRYIRSRLGD-ELKI--IS-PGIGAQGGKA 178 (215)
T ss_pred hcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECC-CcchhHHHHHHhcCC-CcEE--Ee-CCcCCCCCCH
Confidence 445455554443321 1122 23333445556689999876554 334666676665542 2222 22 233332 148
Q ss_pred HHHHhcCCCEEeccchHHHH
Q 012815 297 LELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 297 ~eL~elGv~~Vs~p~~ll~a 316 (456)
.++.+.|.+.++.|..++.+
T Consensus 179 ~~~~~aGad~iV~Gr~I~~~ 198 (215)
T PRK13813 179 ADAIKAGADYVIVGRSIYNA 198 (215)
T ss_pred HHHHHcCCCEEEECcccCCC
Confidence 89999999999999876653
No 395
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=86.44 E-value=23 Score=34.29 Aligned_cols=143 Identities=23% Similarity=0.250 Sum_probs=86.6
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCC------CCccCCCCc------cccCHHHHHHHHHHHHHHh
Q 012815 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSP------KGCGHTRGR------KVVSREEAVMRIKAAVDAR 218 (456)
Q Consensus 151 iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~p------K~CGH~~gk------~lvp~ee~v~kI~AA~~Ar 218 (456)
+||+-+. +.+++.+.++.+.+.|+..+.+-..... +-|-+.+.. .++..+ .++.|++
T Consensus 13 ~~v~r~~-----~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~----~~~~a~~-- 81 (206)
T PRK09140 13 IAILRGI-----TPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPE----QVDRLAD-- 81 (206)
T ss_pred EEEEeCC-----CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHH----HHHHHHH--
Confidence 5555432 5678899999999999999998655420 001000000 133333 2223333
Q ss_pred HhhCCCeEEEEecchhh--------------cccHHHHHHHHHHhHhcCCCEEEe-c-cCCCHHHHHHHHHhCC-CCcee
Q 012815 219 KESGSDIVIVARTDSRQ--------------ALSLEESLRRSRAFADAGADVLFI-D-ALASKEEMKAFCEISP-LVPKM 281 (456)
Q Consensus 219 ~~~G~dfvIiARTDA~~--------------~~~ldeAI~RakAy~eAGAD~Ifi-e-~~~s~eei~~i~~~v~-~vP~~ 281 (456)
.|.+|++..-+|... ....+| +....++|||.|-+ + ..-..+.++.+.+.++ .+|++
T Consensus 82 --aGA~fivsp~~~~~v~~~~~~~~~~~~~G~~t~~E----~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipvv 155 (206)
T PRK09140 82 --AGGRLIVTPNTDPEVIRRAVALGMVVMPGVATPTE----AFAALRAGAQALKLFPASQLGPAGIKALRAVLPPDVPVF 155 (206)
T ss_pred --cCCCEEECCCCCHHHHHHHHHCCCcEEcccCCHHH----HHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeEE
Confidence 366888887766531 123444 34455799999854 3 2335788898888775 35543
Q ss_pred eeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 282 ANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 282 ~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
..||-++ -+..++.+.|+..|..+..++.
T Consensus 156 ----aiGGI~~-~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 156 ----AVGGVTP-ENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred ----EECCCCH-HHHHHHHHCCCeEEEEehHhcc
Confidence 2344322 3468999999999998888765
No 396
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=86.40 E-value=14 Score=37.76 Aligned_cols=146 Identities=10% Similarity=0.033 Sum_probs=77.8
Q ss_pred HHHHHHHHhC--CCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHH---------HHHHHHHHHH
Q 012815 78 AKSLRQILEL--PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYG---------EMVDQGQLIT 146 (456)
Q Consensus 78 a~~Lr~ll~~--~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~---------Eml~~~r~I~ 146 (456)
.++|-+.++. ++..++-+==.....|.+++. |+.++|.. . ..+|+.|.-++=-+ .+...++.+.
T Consensus 109 T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~---Av~~GGg~-~-HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r 183 (277)
T TIGR01334 109 THKMVTLAKKISPMAVVACTRKAIPLTRPLAVK---AVLAAGGV-I-HRIGLSETLLVFANHRTFLNDNFDWGGAIGRLK 183 (277)
T ss_pred HHHHHHHHHhcCCCCEEEecCCCCCChhHHHHH---HHHhCCCc-C-eecCCchhheehHHHHHHhCCcccHHHHHHHHH
Confidence 3445544543 333333333333444666664 45555433 2 36788886433211 2223333333
Q ss_pred hcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCe
Q 012815 147 QAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI 225 (456)
Q Consensus 147 ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~df 225 (456)
+.. ..+|.|+.+ + .+-+++..++|++.|.+..- ++++..+-++.+ +..++.+
T Consensus 184 ~~~~~~kIeVEv~----t----leea~ea~~~GaDiI~lDn~---------------~~e~l~~~v~~l----~~~~~~~ 236 (277)
T TIGR01334 184 QTAPERKITVEAD----T----IEQALTVLQASPDILQLDKF---------------TPQQLHHLHERL----KFFDHIP 236 (277)
T ss_pred HhCCCCCEEEECC----C----HHHHHHHHHcCcCEEEECCC---------------CHHHHHHHHHHH----hccCCCE
Confidence 332 477999987 3 34445677899999999532 334443333322 1112444
Q ss_pred EEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCC
Q 012815 226 VIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA 263 (456)
Q Consensus 226 vIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~ 263 (456)
.| ++.+ ++ .++.+.+|++.|+|.|.+-++.
T Consensus 237 ~l----easG--GI--~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 237 TL----AAAG--GI--NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred EE----EEEC--CC--CHHHHHHHHhcCCCEEEeCcce
Confidence 33 2222 22 1478999999999999887764
No 397
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=86.35 E-value=9 Score=39.00 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHH
Q 012815 162 GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (456)
Q Consensus 162 G~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~lde 241 (456)
|++..+.+.+++ +.|...+||-- |. -+.++-+++|++++++. |+++.| |.|+......++
T Consensus 110 ~~~~~~~~~~~~--~~Gf~~~KiKv-------G~------~~~~~d~~~v~~vr~~~---g~~~~l--~vDaN~~w~~~~ 169 (307)
T TIGR01927 110 GDPALLLLRSAK--AEGFRTFKWKV-------GV------GELAREGMLVNLLLEAL---PDKAEL--RLDANGGLSPDE 169 (307)
T ss_pred CCHHHHHHHHHH--hCCCCEEEEEe-------CC------CChHHHHHHHHHHHHHc---CCCCeE--EEeCCCCCCHHH
Confidence 555554444443 67999998832 11 12344577888887654 445554 778887788899
Q ss_pred HHHHHHHhHh-cCCCEEEeccC-CCHHHHHHHHHhCCCCceeee
Q 012815 242 SLRRSRAFAD-AGADVLFIDAL-ASKEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 242 AI~RakAy~e-AGAD~Ifie~~-~s~eei~~i~~~v~~vP~~~N 283 (456)
|++-++++.+ .|-+.-|+|-+ +..+.++++.+..+ +|+.++
T Consensus 170 A~~~~~~l~~~~~~~i~~iEqP~~~~~~~~~l~~~~~-~Pia~d 212 (307)
T TIGR01927 170 AQQFLKALDPNLRGRIAFLEEPLPDADEMSAFSEATG-TAIALD 212 (307)
T ss_pred HHHHHHhcccccCCCceEEeCCCCCHHHHHHHHHhCC-CCEEeC
Confidence 9999999985 66788899874 44478888988876 777654
No 398
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=86.32 E-value=27 Score=34.52 Aligned_cols=183 Identities=17% Similarity=0.188 Sum_probs=102.4
Q ss_pred hHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012815 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (456)
Q Consensus 99 alSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG 178 (456)
.--++++++.|.|+++++|.- |. . -++++++..++++++ .+|++.= + |++.++ .-|
T Consensus 15 ~~~~~~~~~~gtdai~vGGS~------~v---~-~~~~~~~~~ik~~~~--~~Pvilf-p---~~~~~i--------~~~ 70 (219)
T cd02812 15 EEIAKLAEESGTDAIMVGGSD------GV---S-STLDNVVRLIKRIRR--PVPVILF-P---SNPEAV--------SPG 70 (219)
T ss_pred HHHHHHHHhcCCCEEEECCcc------ch---h-hhHHHHHHHHHHhcC--CCCEEEe-C---CCcccc--------CcC
Confidence 345677888999999999722 22 1 477888888888766 7999862 2 333333 135
Q ss_pred ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHH--HhHh-hCCCeEEE------Ee-cchhhcccHHHHHHHHHH
Q 012815 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD--ARKE-SGSDIVIV------AR-TDSRQALSLEESLRRSRA 248 (456)
Q Consensus 179 aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~--Ar~~-~G~dfvIi------AR-TDA~~~~~ldeAI~RakA 248 (456)
|+++.+=-=.. + .+-.=++- .+++.+..... -..+ ....++|+ |+ |++......+++..-|.+
T Consensus 71 aDa~l~~svln----s-~n~~~i~g--~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~a 143 (219)
T cd02812 71 ADAYLFPSVLN----S-GDPYWIIG--AQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALA 143 (219)
T ss_pred CCEEEEEeeec----C-CCchHHHH--HHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHH
Confidence 77766522110 0 00000111 11111111111 0110 11123332 11 222223456788888888
Q ss_pred hHhcCCCEEEecc---CCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012815 249 FADAGADVLFIDA---LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 249 y~eAGAD~Ifie~---~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
-+..|--.|++|. ..+.+.++++.+....+|+.+ ++|-...-..+++.++|+..|+.|+.....
T Consensus 144 ae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~~pl~v----GGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 144 AEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLIV----GGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred HHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCCCCEEE----eCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 8888978899984 245678888888762366653 333222234577888999999999976654
No 399
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=86.12 E-value=2.2 Score=42.76 Aligned_cols=117 Identities=19% Similarity=0.284 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhccCCcEEEeCCCCCCCH-HH-------HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHH
Q 012815 137 EMVDQGQLITQAVSIPVIGDGDNGYGNA-MN-------VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAV 208 (456)
Q Consensus 137 Eml~~~r~I~ra~~iPVIaD~DtGYG~~-~n-------v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v 208 (456)
+.+..--.+++..++++.- |+. .+ +.+-++...+.|...|-|-|+.. -+|.++..
T Consensus 54 ~~l~eki~l~~~~gV~v~~------GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti-----------~l~~~~r~ 116 (244)
T PF02679_consen 54 EILKEKIDLAHSHGVYVYP------GGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTI-----------DLPEEERL 116 (244)
T ss_dssp HHHHHHHHHHHCTT-EEEE-------HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS--------------HHHHH
T ss_pred HHHHHHHHHHHHcCCeEeC------CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCce-----------eCCHHHHH
Confidence 4445555566777888864 332 22 33445666789999999999851 24555544
Q ss_pred HHHHHHHHHhHhhCCCeEEE---Eecchhhc--ccHHHHHHHHHHhHhcCCCEEEeccCC-------------CHHHHHH
Q 012815 209 MRIKAAVDARKESGSDIVIV---ARTDSRQA--LSLEESLRRSRAFADAGADVLFIDALA-------------SKEEMKA 270 (456)
Q Consensus 209 ~kI~AA~~Ar~~~G~dfvIi---ARTDA~~~--~~ldeAI~RakAy~eAGAD~Ifie~~~-------------s~eei~~ 270 (456)
.-| +.+++ .+|.++ ++.|.... ...++.|+++++..+||||.|.+|+-. ..+++.+
T Consensus 117 ~~I---~~~~~---~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~ 190 (244)
T PF02679_consen 117 RLI---RKAKE---EGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEK 190 (244)
T ss_dssp HHH---HHHCC---TTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHH
T ss_pred HHH---HHHHH---CCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHH
Confidence 444 44443 256665 44454332 336789999999999999999999761 2567778
Q ss_pred HHHhCC
Q 012815 271 FCEISP 276 (456)
Q Consensus 271 i~~~v~ 276 (456)
+.+.++
T Consensus 191 i~~~~~ 196 (244)
T PF02679_consen 191 IIERLG 196 (244)
T ss_dssp HHTTS-
T ss_pred HHHhCC
Confidence 877765
No 400
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=85.96 E-value=7.4 Score=36.42 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCC-CCHHHHHHHHHHHHhccC-CcEEE
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGF-ISYGEMVDQGQLITQAVS-IPVIG 155 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~-lt~~Eml~~~r~I~ra~~-iPVIa 155 (456)
...+++++. .+..+...+++...++.+.+.|+|.|.++.+--+ ...|+... .. ++..+.+++... +||++
T Consensus 94 ~~~~~~~~~-~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~---~~~~~~~~~~g----~~~~~~~~~~~~~~~v~a 165 (212)
T PRK00043 94 VADARALLG-PDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPT---PTKKDAKAPQG----LEGLREIRAAVGDIPIVA 165 (212)
T ss_pred HHHHHHHcC-CCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCC---CCCCCCCCCCC----HHHHHHHHHhcCCCCEEE
Confidence 345555544 3455566788888888888999999988743211 11222211 12 334455555555 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCC
Q 012815 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (456)
Q Consensus 156 D~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~ 188 (456)
+ |+.. .++++.+.++|++||.+-...
T Consensus 166 ~-----GGI~--~~~i~~~~~~Ga~gv~~gs~i 191 (212)
T PRK00043 166 I-----GGIT--PENAPEVLEAGADGVAVVSAI 191 (212)
T ss_pred E-----CCcC--HHHHHHHHHcCCCEEEEeHHh
Confidence 8 3331 366778999999999986554
No 401
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.90 E-value=4.1 Score=41.76 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=43.7
Q ss_pred HHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCC-ceeeeeeccCCCCCCCCHHHHHhcCCCEEeccch
Q 012815 244 RRSRAFADAGADVLFIDALASKEEMKAFCEISPLV-PKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (456)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~v-P~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ 312 (456)
+.+...+++|||.|.++... .+++++.++.+... |.. .+-..||-+ .-+..++++.|+..++.+..
T Consensus 210 ~ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v-~ieaSGGI~-~~ni~~yA~tGvD~Is~gal 276 (289)
T PRK07896 210 EQLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTV-LLESSGGLT-LDTAAAYAETGVDYLAVGAL 276 (289)
T ss_pred HHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCE-EEEEECCCC-HHHHHHHHhcCCCEEEeChh
Confidence 34555678999999999876 67888888653111 222 122223332 24579999999999998763
No 402
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=85.86 E-value=24 Score=31.36 Aligned_cols=127 Identities=17% Similarity=0.137 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHH-
Q 012815 165 MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESL- 243 (456)
Q Consensus 165 ~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI- 243 (456)
....+.++.+.+.|+..++++.... +..+...... +.++..... .+..+++...+.... +.+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~-----~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~ 74 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSS-----DPEEAETDDK----EVLKEVAAE---TDLPLGVQLAINDAA-----AAVD 74 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEE-----CcccCCCccc----cHHHHHHhh---cCCcEEEEEccCCch-----hhhh
Confidence 3556777888899999999987541 1111111110 112222221 233455554432211 111
Q ss_pred HHHHHhHhcCCCEEEeccCC------CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccch
Q 012815 244 RRSRAFADAGADVLFIDALA------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (456)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~~------s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ 312 (456)
..++...++|+|.|.++.-. ..+.++++.+.++..|+.+-+... . ......+.++|+..+.+.+.
T Consensus 75 ~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~---~-~~~~~~~~~~g~d~i~~~~~ 145 (200)
T cd04722 75 IAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPT---G-ELAAAAAEEAGVDEVGLGNG 145 (200)
T ss_pred HHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCC---C-ccchhhHHHcCCCEEEEcCC
Confidence 22678889999999998754 345566777666445555443211 1 11222278899998877553
No 403
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=85.86 E-value=16 Score=38.30 Aligned_cols=200 Identities=20% Similarity=0.183 Sum_probs=110.2
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
|+.+.++|++.|=++.... +-+| .+.++.+.+.. +..|.+=+. ...+.+++..++|+.
T Consensus 28 a~~L~~~Gv~~IEvG~p~~-------------~~~~-~e~i~~i~~~~~~~~v~~~~r-------~~~~di~~a~~~g~~ 86 (363)
T TIGR02090 28 ARKLDELGVDVIEAGFPIA-------------SEGE-FEAIKKISQEGLNAEICSLAR-------ALKKDIDKAIDCGVD 86 (363)
T ss_pred HHHHHHcCCCEEEEeCCCC-------------ChHH-HHHHHHHHhcCCCcEEEEEcc-------cCHHHHHHHHHcCcC
Confidence 4567788999888753221 1112 24455555433 344443222 124556778889999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie 260 (456)
.|+|-..+++- |...+-=.+.++.++++..+++..++.|-.+.+.. .|+. ....+..++-++++.++|||.|.+.
T Consensus 87 ~i~i~~~~Sd~---~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~-eda~-r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 87 SIHTFIATSPI---HLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA-EDAT-RTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred EEEEEEcCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE-eecC-CCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 99997765432 22111113567778887777776665553333322 3443 3457888899999999999999875
Q ss_pred c---CCCHHHHHHHHHhCCC-CceeeeeeccCCCCCCCC---HHHHHhcCCCEEeccchHHH--HHHHHHHHHHHHHH
Q 012815 261 A---LASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLIG--VSVRAMQDALTAIK 329 (456)
Q Consensus 261 ~---~~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~lt---~~eL~elGv~~Vs~p~~ll~--aa~~A~~~~l~~i~ 329 (456)
- .-.++++.++.+.+.. .|+++.+ +... +..+. .-.--+.|+.+|-.....+. +.-.++++.+..|.
T Consensus 162 DT~G~~~P~~v~~li~~l~~~~~~~l~~-H~Hn-d~GlA~AN~laA~~aGa~~vd~s~~GlGeraGN~~lE~vv~~L~ 237 (363)
T TIGR02090 162 DTVGVLTPQKMEELIKKLKENVKLPISV-HCHN-DFGLATANSIAGVKAGAEQVHVTVNGIGERAGNAALEEVVMALK 237 (363)
T ss_pred CCCCccCHHHHHHHHHHHhcccCceEEE-EecC-CCChHHHHHHHHHHCCCCEEEEEeeccccccccccHHHHHHHHH
Confidence 3 3556777777665421 2333322 1111 11122 23334568888766544432 33344555544453
No 404
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=85.79 E-value=5.3 Score=39.68 Aligned_cols=198 Identities=22% Similarity=0.254 Sum_probs=105.5
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecc---hHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEE
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSG---FSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG---~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIa 155 (456)
.-|.++|+.+ +...+-++-+|+++|++|.-++...- .-+- + .| +.--+.+ ...++.|.+++++||++
T Consensus 14 ~GLAQmLkGG---vImdVv~~eQA~iAE~aGACaVmalervPadiR-~-~G----gV~RMsD-P~mIKei~~aVsiPVMA 83 (296)
T KOG1606|consen 14 VGLAQMLKGG---VIMDVVNAEQARIAEEAGACAVMALERVPADIR-A-QG----GVARMSD-PRMIKEIKNAVSIPVMA 83 (296)
T ss_pred HHHHHHhcCC---eEEEecCHHHHHHHHhcCcceEeeeccCCHhHH-h-cC----CeeecCC-HHHHHHHHHhccchhhh
Confidence 3578888765 34577789999999999998887662 1121 1 11 1111111 24568899999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEE-------------EeCCCC--CCCCccCCCCccccCHHHHHHHHHHHHHHhHh
Q 012815 156 DGDNGYGNAMNVKRTVKGYIKAGFAGI-------------ILEDQV--SPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (456)
Q Consensus 156 D~DtGYG~~~nv~rtVk~l~~AGaaGI-------------~IEDq~--~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~ 220 (456)
-.--|+--..++ ++..|++=| |||-.- .|=.||-. +..|+..||+--
T Consensus 84 k~RiGHFVEAQI------lE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~r------dlGEALRRI~EG------ 145 (296)
T KOG1606|consen 84 KVRIGHFVEAQI------LEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCR------DLGEALRRIREG------ 145 (296)
T ss_pred hhhhhhhhHHHH------HHHhccCccchhhhcccccccchhhhhcCcCceeeccc------cHHHHHHHHhhc------
Confidence 888884322222 344455433 233222 14567643 456777776422
Q ss_pred hCCCeEEEEecchhhc-ccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhC-------------CCCceeeeeec
Q 012815 221 SGSDIVIVARTDSRQA-LSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEIS-------------PLVPKMANMLE 286 (456)
Q Consensus 221 ~G~dfvIiARTDA~~~-~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v-------------~~vP~~~N~~~ 286 (456)
--+-||..++. ..+.||++-.+..... .=.+.. .+.+|+..+++++ ..+|+ +|.-.
T Consensus 146 -----AAMIRtkGeagTG~v~EaVkhvr~i~ge---ir~~~~-m~~dev~t~Ak~i~aP~dLv~~t~q~GrlPV-V~FAa 215 (296)
T KOG1606|consen 146 -----AAMIRTKGEAGTGDVSEAVKHVRSINGE---IRVLKN-MDDDEVFTFAKEIAAPYDLVKQTKQLGRLPV-VNFAA 215 (296)
T ss_pred -----hhhheeccccCCCcHHHHHHHHHHHHHH---HHHHHc-CCHHHHHHHHHHhcCcHHHHHHHHHcCCCce-EEecc
Confidence 11234444332 2344444433322210 000001 2334555555432 22453 56655
Q ss_pred cCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 287 GGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 287 ~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
++-.|| -+..=+.+||..-|..|+..+.
T Consensus 216 GGvaTP-ADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 216 GGVATP-ADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred cCcCCh-hHHHHHHHcCCCeEEecccccc
Confidence 533344 3445588999999999887543
No 405
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=85.62 E-value=15 Score=38.67 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhccCCc--EEEeCCCCCCC-----HHHHHHHHHHHHHhCcc---EEEeCCCCC
Q 012815 133 ISYGEMVDQGQLITQAVSIP--VIGDGDNGYGN-----AMNVKRTVKGYIKAGFA---GIILEDQVS 189 (456)
Q Consensus 133 lt~~Eml~~~r~I~ra~~iP--VIaD~DtGYG~-----~~nv~rtVk~l~~AGaa---GI~IEDq~~ 189 (456)
++..+ +..+....+..++| ||+|+=+|-|+ ...|++.+-.-+.+|.. |+.||--..
T Consensus 236 y~~~d-i~~~~~~l~~~~lp~~vmVD~SH~ns~k~~~~q~~va~~v~~qi~~G~~~I~GvMiES~l~ 301 (344)
T TIGR00034 236 YSAAD-VAAAKKQLEKAGLPPHLMIDFSHGNSNKDHRRQPDVAEDVCEQIANGSKAIIGVMIESNLV 301 (344)
T ss_pred CCHHH-HHHHHHHHHHcCCCCeEEEeCCCcccccchhhhHHHHHHHHHHHHcCCccceEEEEEecCC
Confidence 34433 33444444556889 99999998554 23455555555668986 999997653
No 406
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=85.59 E-value=9.7 Score=39.31 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=74.5
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhC-ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE
Q 012815 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAG-FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (456)
Q Consensus 151 iPVIaD~DtGYG~~~nv~rtVk~l~~AG-aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA 229 (456)
+|+.+= .+.+++......++++.+.| ...+||-- |. .+.++-+++|++++++. |+++.|
T Consensus 132 v~~~~~--~~~~~~~~~~~~~~~~~~~G~f~~~KiKv-------g~------~~~~~d~~~v~avr~~~---g~~~~l-- 191 (365)
T cd03318 132 LPVAWT--LASGDTERDIAEAEEMLEAGRHRRFKLKM-------GA------RPPADDLAHVEAIAKAL---GDRASV-- 191 (365)
T ss_pred eEEEEE--EeCCCHHHHHHHHHHHHhCCCceEEEEEe-------CC------CChHHHHHHHHHHHHHc---CCCcEE--
Confidence 565431 12345555566677777888 99999832 21 13345578888887664 455443
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCCEEEeccCC---CHHHHHHHHHhCCCCceee
Q 012815 230 RTDSRQALSLEESLRRSRAFADAGADVLFIDALA---SKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 230 RTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~---s~eei~~i~~~v~~vP~~~ 282 (456)
+-|+.....+++|++.++++.+.| ..|+|-+- +.+.++++++..+ +|+.+
T Consensus 192 ~iDaN~~~~~~~A~~~~~~l~~~~--~~~iEeP~~~~~~~~~~~l~~~~~-~pia~ 244 (365)
T cd03318 192 RVDVNQAWDESTAIRALPRLEAAG--VELIEQPVPRENLDGLARLRSRNR-VPIMA 244 (365)
T ss_pred EEECCCCCCHHHHHHHHHHHHhcC--cceeeCCCCcccHHHHHHHHhhcC-CCEEc
Confidence 578887788999999999999985 67898753 5677888888765 67654
No 407
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=85.39 E-value=10 Score=36.45 Aligned_cols=130 Identities=21% Similarity=0.258 Sum_probs=71.6
Q ss_pred HHHHHHHHhCccEEEe--CCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHh-hCCCeEEEEecchhhcccHHHHHHH
Q 012815 169 RTVKGYIKAGFAGIIL--EDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE-SGSDIVIVARTDSRQALSLEESLRR 245 (456)
Q Consensus 169 rtVk~l~~AGaaGI~I--EDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~-~G~dfvIiARTDA~~~~~ldeAI~R 245 (456)
+.++.+...|++.|.| ||.+. .-..+..-..++.+...... -+.+.-++.|........+.+ .
T Consensus 12 ~~~~~a~~~g~D~vilDlEd~~~-----------~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~---D 77 (221)
T PF03328_consen 12 KMLEKAAASGADFVILDLEDGVP-----------PDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIER---D 77 (221)
T ss_dssp HHHHHHHTTCSSEEEEESSTTSS-----------GGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHH---H
T ss_pred HHHHHHHhcCCCEEEEeCcccCC-----------cccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhh---h
Confidence 4456677789998876 34331 11223333344443333222 123578899988754322222 2
Q ss_pred HHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCc----------eeeeeeccCCCCCCCCHHHHHhc-CCCEEeccchHH
Q 012815 246 SRAFADAGADVLFIDALASKEEMKAFCEISPLVP----------KMANMLEGGGKTPILNPLELEEL-GFKLVAYPLSLI 314 (456)
Q Consensus 246 akAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP----------~~~N~~~~~g~tp~lt~~eL~el-Gv~~Vs~p~~ll 314 (456)
.+ ..++|+|.|+++.+.+.++++++.+.+...| .++-++|.+. .....+|+... |+..+.+|..=|
T Consensus 78 l~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~--gv~~~~eI~a~~~v~~l~~G~~Dl 154 (221)
T PF03328_consen 78 LE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPE--GVENLEEIAAVPGVDGLFFGPADL 154 (221)
T ss_dssp HH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHH--HHHTHHHHHTSTTEEEEEE-HHHH
T ss_pred hh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHH--HHhCHHhhcccCCeeEEEeCcHHH
Confidence 33 8889999999999999999999987654222 1233555321 12345565544 788888877644
Q ss_pred H
Q 012815 315 G 315 (456)
Q Consensus 315 ~ 315 (456)
.
T Consensus 155 s 155 (221)
T PF03328_consen 155 S 155 (221)
T ss_dssp H
T ss_pred H
Confidence 3
No 408
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=85.37 E-value=3 Score=44.02 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=54.7
Q ss_pred HHHHHHhCC-CceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHH----HHhccC---C
Q 012815 80 SLRQILELP-GVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQL----ITQAVS---I 151 (456)
Q Consensus 80 ~Lr~ll~~~-~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~----I~ra~~---i 151 (456)
.+.++.+.- -++++=++.+.-.|+-+.++|+|+|..+..+...+ .+. ..-.++.-+.+..+.. ..+.++ +
T Consensus 179 ~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~-~~~-lg~~~p~~~ai~d~~~a~~~~~~e~g~r~v 256 (369)
T TIGR01304 179 NLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTT-RLV-LGIEVPMATAIADVAAARRDYLDETGGRYV 256 (369)
T ss_pred HHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCccc-ccc-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 455555433 34544489999999988889999998652221111 111 1112444433333322 223343 9
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 152 PVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
|||+|. |..+..++. +.+.+||++|.+
T Consensus 257 pVIAdG--GI~tg~di~----kAlAlGAdaV~i 283 (369)
T TIGR01304 257 HVIADG--GIETSGDLV----KAIACGADAVVL 283 (369)
T ss_pred eEEEeC--CCCCHHHHH----HHHHcCCCEeee
Confidence 999884 333444444 344589999988
No 409
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=85.35 E-value=37 Score=32.87 Aligned_cols=133 Identities=11% Similarity=0.038 Sum_probs=73.8
Q ss_pred CCHHHHH---HHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHH
Q 012815 133 ISYGEMV---DQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVM 209 (456)
Q Consensus 133 lt~~Eml---~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~ 209 (456)
++..++. ..+..+++..++|+++.- . +....+.|++|||+.-.. .|..+.
T Consensus 43 ~~~~~~~~la~~l~~~~~~~~~~liInd------~------~~lA~~~~adGVHlg~~d-------------~~~~~~-- 95 (211)
T PRK03512 43 RRDEEVEADVVAAIALGRRYQARLFIND------Y------WRLAIKHQAYGVHLGQED-------------LETADL-- 95 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCeEEEeC------H------HHHHHHcCCCEEEcChHh-------------CCHHHH--
Confidence 3544554 445566777889999961 1 233445799999994321 121111
Q ss_pred HHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC------------CCHHHHHHHHHhCCC
Q 012815 210 RIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL------------ASKEEMKAFCEISPL 277 (456)
Q Consensus 210 kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~------------~s~eei~~i~~~v~~ 277 (456)
+...+.+ .+++.+-. .++| ++...+.|||.+++-.+ ...+.++++++....
T Consensus 96 --------r~~~~~~-~~iG~S~H----~~~e----~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~ 158 (211)
T PRK03512 96 --------NAIRAAG-LRLGVSTH----DDME----IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLAD 158 (211)
T ss_pred --------HHhcCCC-CEEEEeCC----CHHH----HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCC
Confidence 1112333 34555432 2333 34445789999998543 113467777766433
Q ss_pred CceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012815 278 VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (456)
Q Consensus 278 vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll 314 (456)
+|+.+ -||-+ .-+..++.+.|+.-|-.-..++
T Consensus 159 ~PV~A----iGGI~-~~ni~~l~~~Ga~GiAvisai~ 190 (211)
T PRK03512 159 YPTVA----IGGIS-LERAPAVLATGVGSIAVVSAIT 190 (211)
T ss_pred CCEEE----ECCCC-HHHHHHHHHcCCCEEEEhhHhh
Confidence 66542 23432 2356888999998887655544
No 410
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=85.25 E-value=27 Score=37.63 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=77.6
Q ss_pred HHHHHHhccCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHH-H
Q 012815 141 QGQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-A 217 (456)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtG-YG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~-A 217 (456)
-+|++....+.||+.-+=-- -| ++++.++.+.++...|++=|| .|.. ...++..|.+|-+..+..+++ +
T Consensus 134 G~R~~lgv~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IK-DDE~-------l~~q~~~p~~eRv~~~~~a~~~a 205 (412)
T TIGR03326 134 GVREFLGIKDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLK-DDEN-------LTSQPFNRFEERVEKLYKVRDKV 205 (412)
T ss_pred hHHHHhCCCCCceEEeeccccccCChHHHHHHHHHHHhcCCceee-cCCC-------CCCCCCccHHHHHHHHHHHHHHH
Confidence 36677777789999876655 45 678899999999999998665 3432 223456676665555544443 3
Q ss_pred hHhhCCC--eEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCC-HHHHHHHHH
Q 012815 218 RKESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCE 273 (456)
Q Consensus 218 r~~~G~d--fvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~ 273 (456)
.++.|.. +.+|--. +.+|.++|++...++|+.++++.-... ..-++.+.+
T Consensus 206 ~~eTG~~~~ya~NiT~------~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~ 258 (412)
T TIGR03326 206 EAETGERKEYLANITA------PVREMERRAELVADLGGQYVMVDVVVCGWSALQYIRE 258 (412)
T ss_pred HHHhCCcceEEEEecC------CHHHHHHHHHHHHHhCCCeEEEEeeccchHHHHHHHH
Confidence 3444532 2233221 247889999999999999999875432 344555554
No 411
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=85.20 E-value=29 Score=37.33 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=81.5
Q ss_pred HHHHHHhccCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHH-H
Q 012815 141 QGQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-A 217 (456)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtG-YG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~-A 217 (456)
-+|++....+.||+.=+=-- -| ++.+..+.+.++...|++=|| .|.. ...++..|.+|-+..+..+++ +
T Consensus 133 G~R~llgv~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IK-DDE~-------l~~q~~~p~~eRv~~~~~a~~~a 204 (406)
T cd08207 133 GTRRLTGVEDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIK-DDEL-------LANPPYSPLDERVRAVMRVINDH 204 (406)
T ss_pred hHHHHhCCCCCceEEEecccccCCCHHHHHHHHHHHHhCCCCccc-cccc-------CCCCCCCcHHHHHHHHHHHHHHH
Confidence 36777777889998765544 35 678899999999999998775 2332 223456666665555544443 3
Q ss_pred hHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCC-HHHHHHHHHhCCCCcee
Q 012815 218 RKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEISPLVPKM 281 (456)
Q Consensus 218 r~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~~v~~vP~~ 281 (456)
.++.|...+-..-. ..+.+|.++|++...++|++++++.-... ..-++.+++.. .+|+.
T Consensus 205 ~~eTG~~~~y~~Ni----T~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~-~l~Ih 264 (406)
T cd08207 205 AQRTGRKVMYAFNI----TDDIDEMRRNHDLVVEAGGTCVMVSLNSVGLSGLAALRRHS-QLPIH 264 (406)
T ss_pred HHhhCCcceEEEec----CCCHHHHHHHHHHHHHhCCCeEEEeccccchHHHHHHHhcC-CceEE
Confidence 34445322211111 11358999999999999999999875432 44566666643 35654
No 412
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=85.19 E-value=27 Score=36.43 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhC
Q 012815 239 LEESLRRSRAFADAGADVLFIDALASKEEMKAFCEIS 275 (456)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v 275 (456)
+-|++. |-.|.-+|||++++.++.+.+.++++.+.+
T Consensus 277 ~~E~~~-a~~~~~~ga~i~vm~hp~s~~~~~~~~~~l 312 (319)
T PRK04452 277 LWEAVT-ALTLLLAGADIFMMRHPESVKTLKEIIDTL 312 (319)
T ss_pred HHHHHH-HHHHHHhcCcEEEEeCHHHHHHHHHHHHHH
Confidence 445555 888999999999999999988888888764
No 413
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=85.02 E-value=7.8 Score=40.62 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=58.2
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeC
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~ 157 (456)
-+.+++. -+.|+++=|+.+.-.|+.+.++|+++|++|+.+=- .-|.+.-|.+-+.+....+ .-++||++|.
T Consensus 217 i~~~~~~--~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr-----~~d~~~~~~~~L~~i~~~~--~~~~~i~~dg 287 (356)
T PF01070_consen 217 IEWIRKQ--WKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGR-----QLDWGPPTIDALPEIRAAV--GDDIPIIADG 287 (356)
T ss_dssp HHHHHHH--CSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGT-----SSTTS-BHHHHHHHHHHHH--TTSSEEEEES
T ss_pred HHHHhcc--cCCceEEEecccHHHHHHHHhcCCCEEEecCCCcc-----cCccccccccccHHHHhhh--cCCeeEEEeC
Confidence 3444443 35689999999999999999999999999976632 1355544555444333333 2369999992
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeCC
Q 012815 158 DNGYGNAMNVKRTVKGYIKAGFAGIILED 186 (456)
Q Consensus 158 DtGYG~~~nv~rtVk~l~~AGaaGI~IED 186 (456)
|.-+..++. +....||.+|-|--
T Consensus 288 --Gir~g~Dv~----kalaLGA~~v~igr 310 (356)
T PF01070_consen 288 --GIRRGLDVA----KALALGADAVGIGR 310 (356)
T ss_dssp --S--SHHHHH----HHHHTT-SEEEESH
T ss_pred --CCCCHHHHH----HHHHcCCCeEEEcc
Confidence 222333444 34457999998843
No 414
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=84.98 E-value=5.7 Score=41.99 Aligned_cols=95 Identities=23% Similarity=0.312 Sum_probs=55.7
Q ss_pred HHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHh
Q 012815 141 QGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (456)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~ 220 (456)
.++.|++.+++||++= |-+. .+.++.+.++|++||.+.. |- |+.+....-..+-|..++++.
T Consensus 219 ~i~~l~~~~~~PvivK---Gv~~----~eda~~a~~~Gvd~I~VS~--------HG-Grq~~~~~a~~~~L~ei~~av-- 280 (367)
T TIGR02708 219 DIEEIAGYSGLPVYVK---GPQC----PEDADRALKAGASGIWVTN--------HG-GRQLDGGPAAFDSLQEVAEAV-- 280 (367)
T ss_pred HHHHHHHhcCCCEEEe---CCCC----HHHHHHHHHcCcCEEEECC--------cC-ccCCCCCCcHHHHHHHHHHHh--
Confidence 4567777889999997 3333 4566788899999998844 42 333321111122333333332
Q ss_pred hCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEecc
Q 012815 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (456)
Q Consensus 221 ~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~ 261 (456)
+.++-|++--+-+.. .+=.|+.+ .|||+|++-.
T Consensus 281 -~~~i~vi~dGGIr~g------~Dv~KaLa-lGAd~V~igR 313 (367)
T TIGR02708 281 -DKRVPIVFDSGVRRG------QHVFKALA-SGADLVALGR 313 (367)
T ss_pred -CCCCcEEeeCCcCCH------HHHHHHHH-cCCCEEEEcH
Confidence 334566665555432 23344555 9999999853
No 415
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=84.97 E-value=8.8 Score=41.97 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHh---ccCCcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHH
Q 012815 133 ISYGEMVDQGQLITQ---AVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAV 208 (456)
Q Consensus 133 lt~~Eml~~~r~I~r---a~~iPVIaD~DtGYG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v 208 (456)
.|.+|+++.+....+ ....-|..++++++- ++..+.+.++.+.++|+.-|+|=|.+ |. ..++++.
T Consensus 110 ~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTv-----G~------~~P~~~~ 178 (494)
T TIGR00973 110 MTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTV-----GY------ALPAEYG 178 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----CC------CCHHHHH
Confidence 678888887665543 335779999999876 56789999999999999999999986 33 3446677
Q ss_pred HHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 209 MRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 209 ~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
+.|+..++..... ++..|-..+ -+++--|+.-+.+..+|||+.|
T Consensus 179 ~~i~~l~~~~~~~-~~v~l~~H~----HND~GlAvANalaAv~aGa~~v 222 (494)
T TIGR00973 179 NLIKGLRENVPNI-DKAILSVHC----HNDLGLAVANSLAAVQNGARQV 222 (494)
T ss_pred HHHHHHHHhhccc-cCceEEEEe----CCCCChHHHHHHHHHHhCCCEE
Confidence 7777666543210 012221111 1122345566666777888754
No 416
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=84.85 E-value=47 Score=33.60 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHhCCCce--eecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeC
Q 012815 80 SLRQILELPGVH--QGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (456)
Q Consensus 80 ~Lr~ll~~~~~l--v~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~ 157 (456)
+|++.|..+++. ...+.-|++++.++..+|||.+.+-+ --...+.+.++.+.+.+..+-..|||=
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~aGfDwl~iD~-----------EHapnd~~sl~~qL~a~~~~~~~pvVR-- 73 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATAGFDWLLIDG-----------EHAPNDLQSLLHQLQAVAAYASPPVVR-- 73 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhcCCCEEEecc-----------cccCccHHHHHHHHHHhhccCCCCeee--
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHH---------------------
Q 012815 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD--------------------- 216 (456)
Q Consensus 158 DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~--------------------- 216 (456)
-+.+-...+|++...||-++.| |.|..-|.++.+.+|..
T Consensus 74 -----~p~g~~~~Ikq~LD~GAqtlli---------------PmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~ 133 (255)
T COG3836 74 -----PPVGDPVMIKQLLDIGAQTLLI---------------PMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGR 133 (255)
T ss_pred -----CCCCCHHHHHHHHccccceeee---------------eccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCC
Q ss_pred ---HhHhhCCCeEEEEecchh-hcccHHHHHHHHHHhHhcCCCEEEec-----------cCCCHHHHHHHHHhCCCCcee
Q 012815 217 ---ARKESGSDIVIVARTDSR-QALSLEESLRRSRAFADAGADVLFID-----------ALASKEEMKAFCEISPLVPKM 281 (456)
Q Consensus 217 ---Ar~~~G~dfvIiARTDA~-~~~~ldeAI~RakAy~eAGAD~Ifie-----------~~~s~eei~~i~~~v~~vP~~ 281 (456)
--...+.+.++.+-.+.+ +..-||+..+- -|.|+||+- +-+..+++++..+..
T Consensus 134 i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaav------eGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~------ 201 (255)
T COG3836 134 IADYLAQANDEICLLVQIETRAGLDNLDAIAAV------EGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHI------ 201 (255)
T ss_pred HHHHHHhcccceEEEEEEccHHHHHHHHHHHcc------CCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHH------
Q ss_pred eeeeccCCCCC-CCC-----HHHHHhcCCCEEeccch--HHHHHHHHHHHHHH
Q 012815 282 ANMLEGGGKTP-ILN-----PLELEELGFKLVAYPLS--LIGVSVRAMQDALT 326 (456)
Q Consensus 282 ~N~~~~~g~tp-~lt-----~~eL~elGv~~Vs~p~~--ll~aa~~A~~~~l~ 326 (456)
+..+...||.. .++ ...+.++|+..+..|.- +++.+.+++...++
T Consensus 202 ~~~i~aaGKaagil~~~p~~a~~yl~lGa~fvavG~D~~l~~~a~~~l~~~fk 254 (255)
T COG3836 202 IARIRAAGKAAGILAADPADARRYLALGATFVAVGSDTGLLRRAAEALLAAFK 254 (255)
T ss_pred HHHHHhcCCccccccCCHHHHHHHHHhCCeEEEEeccHHHHHHHHHHHHHHhc
No 417
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=84.79 E-value=8.5 Score=37.91 Aligned_cols=118 Identities=23% Similarity=0.316 Sum_probs=77.3
Q ss_pred CcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE
Q 012815 151 IPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (456)
Q Consensus 151 iPVIaD~DtGYG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA 229 (456)
+||+. + +++++...++.+++.|...|-|-=.+ ....+-|+++++.. ++.+|=|
T Consensus 16 I~Vlr------~~~~e~a~~~a~Ali~gGi~~IEITl~s----------------p~a~e~I~~l~~~~----p~~lIGA 69 (211)
T COG0800 16 VPVIR------GDDVEEALPLAKALIEGGIPAIEITLRT----------------PAALEAIRALAKEF----PEALIGA 69 (211)
T ss_pred eEEEE------eCCHHHHHHHHHHHHHcCCCeEEEecCC----------------CCHHHHHHHHHHhC----cccEEcc
Confidence 77775 4 57889999999999999999884432 12344555555543 3555555
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHH---HHHhcCCCE
Q 012815 230 RTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPL---ELEELGFKL 306 (456)
Q Consensus 230 RTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~---eL~elGv~~ 306 (456)
=|=-. -+.+.++.+|||+.++=++++ .++.+.+.... +|++ ||. .|+. ...++|++.
T Consensus 70 GTVL~--------~~q~~~a~~aGa~fiVsP~~~--~ev~~~a~~~~-ip~~------PG~---~TptEi~~Ale~G~~~ 129 (211)
T COG0800 70 GTVLN--------PEQARQAIAAGAQFIVSPGLN--PEVAKAANRYG-IPYI------PGV---ATPTEIMAALELGASA 129 (211)
T ss_pred ccccC--------HHHHHHHHHcCCCEEECCCCC--HHHHHHHHhCC-Cccc------CCC---CCHHHHHHHHHcChhh
Confidence 54221 145677788999999999886 46777776655 6654 342 3444 456789887
Q ss_pred Eec-cchHH
Q 012815 307 VAY-PLSLI 314 (456)
Q Consensus 307 Vs~-p~~ll 314 (456)
+-+ |...+
T Consensus 130 lK~FPa~~~ 138 (211)
T COG0800 130 LKFFPAEVV 138 (211)
T ss_pred eeecCcccc
Confidence 754 54444
No 418
>PLN02428 lipoic acid synthase
Probab=84.79 E-value=57 Score=34.47 Aligned_cols=188 Identities=17% Similarity=0.172 Sum_probs=97.7
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
|+.+.+.|.+-+.+.|... --+||.+ .+.+.+.++.|.+.. ++-|-+=.++..|+ .+.++.+.++|..
T Consensus 139 A~~v~~~Glk~vvltSg~r----ddl~D~g---a~~~~elir~Ir~~~P~i~Ie~L~pdf~~d----~elL~~L~eAG~d 207 (349)
T PLN02428 139 AEAIASWGVDYVVLTSVDR----DDLPDGG---SGHFAETVRRLKQLKPEILVEALVPDFRGD----LGAVETVATSGLD 207 (349)
T ss_pred HHHHHHcCCCEEEEEEcCC----CCCCccc---HHHHHHHHHHHHHhCCCcEEEEeCccccCC----HHHHHHHHHcCCC
Confidence 3344455776555554221 1246633 445555555555432 22233322223344 4566777788887
Q ss_pred EEEeCCCCC----CCCccCCCCccccCHHHHHHHHHHHHHHhHhhC-CCeEEEEecchhhcccHHHHHHHHHHhHhcCCC
Q 012815 181 GIILEDQVS----PKGCGHTRGRKVVSREEAVMRIKAAVDARKESG-SDIVIVARTDSRQALSLEESLRRSRAFADAGAD 255 (456)
Q Consensus 181 GI~IEDq~~----pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G-~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD 255 (456)
.++.--.+. ++.|. +-.+.++..+.|+.|++....+. .-.+|++=. +..+|.++-.....+.|.|
T Consensus 208 ~i~hnlETv~rL~~~Ir~-----~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLG-----ET~Edv~e~l~~Lrelgvd 277 (349)
T PLN02428 208 VFAHNIETVERLQRIVRD-----PRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLG-----ETDEEVVQTMEDLRAAGVD 277 (349)
T ss_pred EEccCccCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecC-----CCHHHHHHHHHHHHHcCCC
Confidence 776432222 22331 01134555666666555411000 012333332 2345666667777889999
Q ss_pred EEEeccC--CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHH-------hcCCCEEeccchHHHHHHHHHHHHHH
Q 012815 256 VLFIDAL--ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELE-------ELGFKLVAYPLSLIGVSVRAMQDALT 326 (456)
Q Consensus 256 ~Ifie~~--~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~-------elGv~~Vs~p~~ll~aa~~A~~~~l~ 326 (456)
.+-+--. |+. ..++++ +.++++|++ ++||+.|.-|+ +.|.++.|-+....
T Consensus 278 ~vtigqyL~Ps~------------~h~~v~--------~~v~p~~f~~~~~~~~~~gf~~v~sgp-~vrssy~a~~~~~~ 336 (349)
T PLN02428 278 VVTFGQYLRPTK------------RHLPVK--------EYVTPEKFEFWREYGEEMGFRYVASGP-LVRSSYKAGEFFIK 336 (349)
T ss_pred EEeeccccCCCc------------ceeeee--------cccCHHHHHHHHHHHHHcCCceEEecC-cccchhhhHHHHHH
Confidence 8876331 111 112222 234555443 48999998776 67889999888888
Q ss_pred HHHcC
Q 012815 327 AIKGG 331 (456)
Q Consensus 327 ~i~~g 331 (456)
++...
T Consensus 337 ~~~~~ 341 (349)
T PLN02428 337 SMIRE 341 (349)
T ss_pred HHHHh
Confidence 87643
No 419
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=84.78 E-value=29 Score=37.15 Aligned_cols=120 Identities=13% Similarity=0.189 Sum_probs=79.0
Q ss_pred HHHHHHhccCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHH-
Q 012815 141 QGQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA- 217 (456)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtG-YG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~A- 217 (456)
-+|++....+.||+.=+--- -| ++.+..+.+.++...|++=|| .|.. ...++..|.+|-+..+..+++.
T Consensus 114 G~R~~lgv~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IK-DDE~-------l~~q~~~p~~eRv~a~~~a~~~a 185 (391)
T cd08209 114 GIRQRLGVHDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIK-DDEI-------LFDNPLAPALERIRACRPVLQEV 185 (391)
T ss_pred HHHHHhCCCCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCccc-cccc-------CCCCCCCCHHHHHHHHHHHHHHH
Confidence 36777788889999766554 35 678899999999999998664 2322 2334566776666555555443
Q ss_pred hHhhCCC--eEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCC-HHHHHHHHHh
Q 012815 218 RKESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEI 274 (456)
Q Consensus 218 r~~~G~d--fvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~~ 274 (456)
.++.|.. +.+|- |+ +.+|.++|++...++|++++++.-... ..-++.+++.
T Consensus 186 ~~eTG~~~~ya~Ni-T~-----~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~ 239 (391)
T cd08209 186 YEQTGRRTLYAVNL-TG-----PVFTLKEKARRLVEAGANALLFNVFAYGLDVLEALASD 239 (391)
T ss_pred HHhhCCcceEEEEc-CC-----CHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHhc
Confidence 3344432 22222 21 358899999999999999999876433 3456666663
No 420
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=84.76 E-value=16 Score=37.84 Aligned_cols=120 Identities=22% Similarity=0.330 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
..+.+....+.+.+.|...++|--.. . +..+-+++|+|++++. |++.-| +.|+......++|
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~-------~------~~~~d~~~v~avRe~~---g~~~~l--~iDan~~~~~~~A 204 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGV-------G------DGDEDLERVRALREAV---GDDVRL--MVDANGGWTLEEA 204 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCC-------C------chHHHHHHHHHHHHHh---CCCceE--EEeCCCCcCHHHH
Confidence 45677788888888999999995432 1 1124578888888876 334443 4588888889999
Q ss_pred HHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcC-CCEE
Q 012815 243 LRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLV 307 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elG-v~~V 307 (456)
++-+++..+.| .-|+|-+ .+.+.++++.+.++ +|+.+.=. .+......+|-+.| +..|
T Consensus 205 ~~~~~~l~~~~--l~~iEeP~~~~d~~~~~~l~~~~~-~PIa~gEs----~~~~~~~~~l~~~~a~div 266 (372)
T COG4948 205 IRLARALEEYG--LEWIEEPLPPDDLEGLRELRAATS-TPIAAGES----VYTRWDFRRLLEAGAVDIV 266 (372)
T ss_pred HHHHHHhcccC--cceEECCCCccCHHHHHHHHhcCC-CCEecCcc----cccHHHHHHHHHcCCCCee
Confidence 99999999998 8899875 35778888888766 67654311 11123457777787 4444
No 421
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=84.70 E-value=11 Score=37.42 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchh-hcccHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-QALSLEE 241 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~-~~~~lde 241 (456)
++.-+...++..+++||.||.+|. ++-|++++...+ .+.+=+-+-|-. ..--+.-
T Consensus 31 ~~~iv~~mA~Aa~~gGAvgiR~~g---------------------v~dIkai~~~v~---vPIIGIiKrd~~~s~v~ITp 86 (229)
T COG3010 31 SPEIVAAMALAAEQGGAVGIRIEG---------------------VEDIKAIRAVVD---VPIIGIIKRDYPDSPVRITP 86 (229)
T ss_pred chhHHHHHHHHHHhCCcceEeecc---------------------hhhHHHHHhhCC---CCeEEEEecCCCCCCceecc
Confidence 345566777888899999999984 345666544432 222222222221 1112334
Q ss_pred HHHHHHHhHhcCCCEEEeccC----CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHH---HHhcCCCEEecc
Q 012815 242 SLRRSRAFADAGADVLFIDAL----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE---LEELGFKLVAYP 310 (456)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~----~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~e---L~elGv~~Vs~p 310 (456)
.++...++.++||+.|-+++. |+. .+++|.+... .|-.+-|-.- -|++| ..++||..|...
T Consensus 87 tlkeVd~L~~~Ga~IIA~DaT~R~RP~~-~~~~~i~~~k-~~~~l~MAD~------St~ee~l~a~~~G~D~IGTT 154 (229)
T COG3010 87 TLKEVDALAEAGADIIAFDATDRPRPDG-DLEELIARIK-YPGQLAMADC------STFEEGLNAHKLGFDIIGTT 154 (229)
T ss_pred cHHHHHHHHHCCCcEEEeecccCCCCcc-hHHHHHHHhh-cCCcEEEecc------CCHHHHHHHHHcCCcEEecc
Confidence 467788899999999999984 332 6777776543 3433333221 24555 567899988553
No 422
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=84.69 E-value=16 Score=40.33 Aligned_cols=205 Identities=15% Similarity=0.106 Sum_probs=109.1
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC---------CcEEEeCCCCCCCH--HHHHHH
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS---------IPVIGDGDNGYGNA--MNVKRT 170 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~---------iPVIaD~DtGYG~~--~nv~rt 170 (456)
|+.+.++|++.|=++. |... .++.+.+++|.+... .|.+. +++.. ..+...
T Consensus 112 a~~L~~~GVd~IEvG~----------Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~----a~~R~~~~dId~a 173 (503)
T PLN03228 112 ARQLAKLRVDIMEVGF----------PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVIC----GIARCKKRDIEAA 173 (503)
T ss_pred HHHHHHcCCCEEEEeC----------CCCC----HHHHHHHHHHHHhcccccccccccceEEe----eecccCHhhHHHH
Confidence 4567778988777643 3211 344555677765321 23333 45532 345544
Q ss_pred HHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhH
Q 012815 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (456)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~ 250 (456)
++....+|+..|+|-=.+++ -|...+-=.+.++.++++..+++.+++.|...+...=.|+. ..+.+-.++-+++..
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd---~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~-Rtd~efl~~~~~~a~ 249 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSD---IHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGG-RSDKEFLCKILGEAI 249 (503)
T ss_pred HHhhcccCCCEEEEEecCCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecccccc-ccCHHHHHHHHHHHH
Confidence 44444557788887544321 13211112367888999888887777665432333323432 234566788888999
Q ss_pred hcCCCEEEecc---CCCHHHHHHHHH----hCCCCc-eeeeeeccCCCCCCCC---HHHHHhcCCCEEeccchH--HHHH
Q 012815 251 DAGADVLFIDA---LASKEEMKAFCE----ISPLVP-KMANMLEGGGKTPILN---PLELEELGFKLVAYPLSL--IGVS 317 (456)
Q Consensus 251 eAGAD~Ifie~---~~s~eei~~i~~----~v~~vP-~~~N~~~~~g~tp~lt---~~eL~elGv~~Vs~p~~l--l~aa 317 (456)
++|||.|.+.- .-.++++.++.+ .++..+ +++.+ +.+. .-.+. .-.--+.|+..|-..... -++.
T Consensus 250 ~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~-H~HN-D~GlAvANslaAi~aGa~~Vd~Tv~GiGERaG 327 (503)
T PLN03228 250 KAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSV-HCHN-DLGLATANTIAGICAGARQVEVTINGIGERSG 327 (503)
T ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEe-cccC-CcChHHHHHHHHHHhCCCEEEEeccccccccC
Confidence 99999998753 345556655554 344222 22322 1111 11121 123347888888654433 2344
Q ss_pred HHHHHHHHHHHHc
Q 012815 318 VRAMQDALTAIKG 330 (456)
Q Consensus 318 ~~A~~~~l~~i~~ 330 (456)
-.++++.+..|+.
T Consensus 328 Na~lEevv~~L~~ 340 (503)
T PLN03228 328 NASLEEVVMALKC 340 (503)
T ss_pred CccHHHHHHHHHh
Confidence 4455555555543
No 423
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=84.63 E-value=25 Score=37.83 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=78.2
Q ss_pred HHHHHHhccCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHH-H
Q 012815 141 QGQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-A 217 (456)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtG-YG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~-A 217 (456)
-+|++....+.|++.-+--- -| ++++..+.+.++...|++=|| .|.. ...++..|.++-+..+..+++ +
T Consensus 121 G~R~~lgv~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iK-DDE~-------l~~q~~~p~~~Rv~~~~~a~~~a 192 (412)
T cd08213 121 GVREILGIKDRPLLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVK-DDEN-------LTSQPFNRFEERAKESLKARDKA 192 (412)
T ss_pred hHHHHhCCCCCCeEEeecCcccCCCHHHHHHHHHHHHhcCCcccc-cCcc-------CCCCCCCCHHHHHHHHHHHHHHH
Confidence 36777777889999887665 45 678899999999999998664 2332 223456677665555554443 3
Q ss_pred hHhhCCC--eEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCC-HHHHHHHHH
Q 012815 218 RKESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCE 273 (456)
Q Consensus 218 r~~~G~d--fvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~ 273 (456)
.++.|.. +.+|.-. +.+|.++|++...++|++++++..... ..-++.+.+
T Consensus 193 ~~eTG~~~~y~~NiT~------~~~em~~ra~~a~e~G~~~~mv~~~~~G~~~l~~l~~ 245 (412)
T cd08213 193 EAETGERKAYLANITA------PVREMERRAELVADLGGKYVMIDVVVAGWSALQYLRD 245 (412)
T ss_pred HHhhCCcceEEEEecC------CHHHHHHHHHHHHHhCCCeEEeeccccChHHHHHHHH
Confidence 3344422 4444222 258899999999999999999876432 334555554
No 424
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.50 E-value=4.2 Score=41.54 Aligned_cols=63 Identities=13% Similarity=0.261 Sum_probs=45.2
Q ss_pred HHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 244 RRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
+.++.++++|||.|+++... .+++++.++.++.. . .++..|....-+..++++.|+..++.+.
T Consensus 204 ee~~ea~~~gaDiImLDn~s-~e~l~~av~~~~~~-~---~leaSGgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 204 DQIEPVLAAGVDTIMLDNFS-LDDLREGVELVDGR-A---IVEASGNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred HHHHHHHhcCCCEEEECCCC-HHHHHHHHHHhCCC-e---EEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 45666778999999999874 57888888876531 1 3333232333457999999999999876
No 425
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=84.46 E-value=4.2 Score=43.02 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=59.1
Q ss_pred HHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc--CCcEE
Q 012815 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVI 154 (456)
Q Consensus 77 ~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~--~iPVI 154 (456)
.-+-||+. .+.|+++=|+-++-.|+.+.++|+++|.+|+.+- ...|...-|++-+ ..|++++ .+||+
T Consensus 215 di~wlr~~--~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGG-----rqld~~~~t~~~L----~ei~~av~~~~~vi 283 (367)
T PLN02493 215 DVQWLQTI--TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGA-----RQLDYVPATISAL----EEVVKATQGRIPVF 283 (367)
T ss_pred HHHHHHhc--cCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCC-----CCCCCchhHHHHH----HHHHHHhCCCCeEE
Confidence 34445553 3468999999999999999999999999997762 2345443333322 2333333 49999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 155 aD~DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
+|. |.-+..++. |. ...||.+|.|
T Consensus 284 ~dG--GIr~G~Dv~---KA-LALGA~aV~i 307 (367)
T PLN02493 284 LDG--GVRRGTDVF---KA-LALGASGIFI 307 (367)
T ss_pred EeC--CcCcHHHHH---HH-HHcCCCEEEE
Confidence 883 333333444 33 3369999988
No 426
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.46 E-value=31 Score=33.68 Aligned_cols=126 Identities=18% Similarity=0.253 Sum_probs=77.4
Q ss_pred HHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC
Q 012815 144 LITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS 223 (456)
Q Consensus 144 ~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~ 223 (456)
.+.+.-=+||+-. -+++++.+.++.+.+.|+..|-|-=.. .+..+-|+..++. . +
T Consensus 11 ~l~~~~~iaV~r~-----~~~~~a~~i~~al~~~Gi~~iEitl~~----------------~~~~~~I~~l~~~---~-p 65 (212)
T PRK05718 11 ILRAGPVVPVIVI-----NKLEDAVPLAKALVAGGLPVLEVTLRT----------------PAALEAIRLIAKE---V-P 65 (212)
T ss_pred HHHHCCEEEEEEc-----CCHHHHHHHHHHHHHcCCCEEEEecCC----------------ccHHHHHHHHHHH---C-C
Confidence 3433333777653 246788999999999999988774221 1223344444332 2 4
Q ss_pred CeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCC-CCCCCHHHHHhc
Q 012815 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGK-TPILNPLELEEL 302 (456)
Q Consensus 224 dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~-tp~lt~~eL~el 302 (456)
+..|-|=|=-. .+.++...+|||+-++.++... ++-+.+.+.. +|.+ ||. ||. ...+..++
T Consensus 66 ~~~IGAGTVl~--------~~~a~~a~~aGA~FivsP~~~~--~vi~~a~~~~-i~~i------PG~~Tpt-Ei~~a~~~ 127 (212)
T PRK05718 66 EALIGAGTVLN--------PEQLAQAIEAGAQFIVSPGLTP--PLLKAAQEGP-IPLI------PGVSTPS-ELMLGMEL 127 (212)
T ss_pred CCEEEEeeccC--------HHHHHHHHHcCCCEEECCCCCH--HHHHHHHHcC-CCEe------CCCCCHH-HHHHHHHC
Confidence 66666655332 1568888999999999999764 5555566544 5543 232 220 14557789
Q ss_pred CCCEEec-cch
Q 012815 303 GFKLVAY-PLS 312 (456)
Q Consensus 303 Gv~~Vs~-p~~ 312 (456)
|++.|-+ |..
T Consensus 128 Ga~~vKlFPa~ 138 (212)
T PRK05718 128 GLRTFKFFPAE 138 (212)
T ss_pred CCCEEEEccch
Confidence 9998766 443
No 427
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=84.46 E-value=35 Score=31.74 Aligned_cols=167 Identities=15% Similarity=0.210 Sum_probs=82.6
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
++.+.++|++.+-+. +. ...-.|... +++ ..++.|.+.++.|+.++.=. -++ .+-++.+.++|++|
T Consensus 18 ~~~~~~~G~~~i~l~---~~-d~~~~~~~~-~~~----~~~~~i~~~~~~~~~v~l~~--~d~---~~~~~~~~~~g~dg 83 (211)
T cd00429 18 LKRLEEAGADWIHID---VM-DGHFVPNLT-FGP----PVVKALRKHTDLPLDVHLMV--ENP---ERYIEAFAKAGADI 83 (211)
T ss_pred HHHHHHcCCCEEEEe---cc-cCCCCCccc-cCH----HHHHHHHhhCCCcEEEEeee--CCH---HHHHHHHHHcCCCE
Confidence 566777899988874 10 000012111 222 34555554444555444211 133 33466677899999
Q ss_pred EEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEecc
Q 012815 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (456)
Q Consensus 182 I~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~ 261 (456)
+++=+.. .++..+.++.++.. +..+.+...++. . .++.++|.+. +|.+++-+
T Consensus 84 v~vh~~~---------------~~~~~~~~~~~~~~----~~~~g~~~~~~~----~----~~~~~~~~~~-~d~i~~~~ 135 (211)
T cd00429 84 ITFHAEA---------------TDHLHRTIQLIKEL----GMKAGVALNPGT----P----VEVLEPYLDE-VDLVLVMS 135 (211)
T ss_pred EEECccc---------------hhhHHHHHHHHHHC----CCeEEEEecCCC----C----HHHHHHHHhh-CCEEEEEE
Confidence 8775532 12333333333322 222223222211 1 3566666555 78775533
Q ss_pred CC---C--------HHHHHHHHHhCC----CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012815 262 LA---S--------KEEMKAFCEISP----LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (456)
Q Consensus 262 ~~---s--------~eei~~i~~~v~----~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~ 315 (456)
+. + .+.++++.+..+ .+|+. + .||-++ -+..++.+.|+..++.+..++.
T Consensus 136 ~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~---v-~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 136 VNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIE---V-DGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred ECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEE---E-ECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 21 1 123444443332 13432 2 235444 4468888999999999987664
No 428
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=84.43 E-value=4.5 Score=40.44 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCCcEEEeCCCCCCCH----HHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHH
Q 012815 137 EMVDQGQLITQAVSIPVIGDGDNGYGNA----MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIK 212 (456)
Q Consensus 137 Eml~~~r~I~ra~~iPVIaD~DtGYG~~----~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~ 212 (456)
+.+...-.+++..++++... .+ +-.. ..+.+-++...+.|...|-|-|+.. =+|.++.++-|+
T Consensus 41 ~~l~eki~la~~~~V~v~~G-Gt-l~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~-----------~i~~~~~~rlI~ 107 (237)
T TIGR03849 41 DIVKEKIEMYKDYGIKVYPG-GT-LFEIAHSKGKFDEYLNECDELGFEAVEISDGSM-----------EISLEERCNLIE 107 (237)
T ss_pred HHHHHHHHHHHHcCCeEeCC-cc-HHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCcc-----------CCCHHHHHHHHH
Confidence 34444445566678888643 11 1111 1233344566789999999998752 256666655555
Q ss_pred HHHHHhHhhCCCeEEE---Eecch--hhcccHHHHHHHHHHhHhcCCCEEEecc
Q 012815 213 AAVDARKESGSDIVIV---ARTDS--RQALSLEESLRRSRAFADAGADVLFIDA 261 (456)
Q Consensus 213 AA~~Ar~~~G~dfvIi---ARTDA--~~~~~ldeAI~RakAy~eAGAD~Ifie~ 261 (456)
.+++. +|.+. ++-+. ....+.++-|++++++.+||||.|++|+
T Consensus 108 ~~~~~------g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEa 155 (237)
T TIGR03849 108 RAKDN------GFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEG 155 (237)
T ss_pred HHHhC------CCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 55433 23322 11112 2235678999999999999999999998
No 429
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=84.30 E-value=5.2 Score=41.14 Aligned_cols=93 Identities=17% Similarity=0.273 Sum_probs=55.6
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeC
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~ 157 (456)
...+++++ ..+..+++.+-+.--|+.++++|.|+|.+-|+.- .-+.| ++.+ ........+++.+++|||+=
T Consensus 126 ~~~i~~l~-~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eA-GGH~g-~~~~-----~~~~L~~~v~~~~~iPViaA- 196 (330)
T PF03060_consen 126 PEVIERLH-AAGIKVIPQVTSVREARKAAKAGADAIVAQGPEA-GGHRG-FEVG-----STFSLLPQVRDAVDIPVIAA- 196 (330)
T ss_dssp HHHHHHHH-HTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTS-SEE----SSG------HHHHHHHHHHH-SS-EEEE-
T ss_pred HHHHHHHH-HcCCccccccCCHHHHHHhhhcCCCEEEEecccc-CCCCC-cccc-----ceeeHHHHHhhhcCCcEEEe-
Confidence 44455544 4568888899999999999999999999887652 12233 1212 34455566677778999994
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 158 DNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 158 DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
.|.++.. .+..+...||+||.+
T Consensus 197 -GGI~dg~----~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 197 -GGIADGR----GIAAALALGADGVQM 218 (330)
T ss_dssp -SS--SHH----HHHHHHHCT-SEEEE
T ss_pred -cCcCCHH----HHHHHHHcCCCEeec
Confidence 2344533 334566789999998
No 430
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.30 E-value=25 Score=34.25 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
+++++.+.++.+.+.|+..|-|-=.. .+..+-|+..++. . ++..|=|=|=-.
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~t----------------p~a~~~I~~l~~~---~-~~~~vGAGTVl~-------- 65 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRT----------------PAALDAIRAVAAE---V-EEAIVGAGTILN-------- 65 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC----------------ccHHHHHHHHHHH---C-CCCEEeeEeCcC--------
Confidence 56789999999999999988775432 1123334333322 2 455555554222
Q ss_pred HHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHH---HHhcCCCEEec-cchHHH--H
Q 012815 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE---LEELGFKLVAY-PLSLIG--V 316 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~e---L~elGv~~Vs~-p~~ll~--a 316 (456)
.+.++...+|||+-++-+++. +++.+.+++.. +|.+ ||. +|+.| ..++|++.|-+ |...+. .
T Consensus 66 ~e~a~~ai~aGA~FivSP~~~--~~vi~~a~~~~-i~~i------PG~---~TptEi~~A~~~Ga~~vK~FPa~~~GG~~ 133 (201)
T PRK06015 66 AKQFEDAAKAGSRFIVSPGTT--QELLAAANDSD-VPLL------PGA---ATPSEVMALREEGYTVLKFFPAEQAGGAA 133 (201)
T ss_pred HHHHHHHHHcCCCEEECCCCC--HHHHHHHHHcC-CCEe------CCC---CCHHHHHHHHHCCCCEEEECCchhhCCHH
Confidence 256778889999999998865 46666777655 5543 342 45544 66799998855 655652 4
Q ss_pred HHHHHHHHH
Q 012815 317 SVRAMQDAL 325 (456)
Q Consensus 317 a~~A~~~~l 325 (456)
-+++++.-+
T Consensus 134 yikal~~pl 142 (201)
T PRK06015 134 FLKALSSPL 142 (201)
T ss_pred HHHHHHhhC
Confidence 555655443
No 431
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=84.30 E-value=9.9 Score=41.00 Aligned_cols=276 Identities=18% Similarity=0.220 Sum_probs=143.9
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCC--CCCC-H-HHHHHHHHHHHHh
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-A-MNVKRTVKGYIKA 177 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~Dt--GYG~-~-~nv~rtVk~l~~A 177 (456)
+..+.+.||-.+=+-|.+.--+.+=+ .. =..=|++...+.....+.+-...=..+ ||-. + .-|.+-|++.++-
T Consensus 34 ~e~lD~~G~~slE~WGGATFDaciRf--Ln-EDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~n 110 (472)
T COG5016 34 AEALDKVGYWSLEVWGGATFDACIRF--LN-EDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAEN 110 (472)
T ss_pred HHHHHhcCeeEEEecCCccHHHHHHH--hc-CCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhc
Confidence 44566778876666543321111111 00 112244455554444444444555555 6653 3 4577788999999
Q ss_pred CccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecch--hhcccHHHHHHHHHHhHhcCCC
Q 012815 178 GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS--RQALSLEESLRRSRAFADAGAD 255 (456)
Q Consensus 178 GaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA--~~~~~ldeAI~RakAy~eAGAD 255 (456)
|.+-+.|=|-. =+ +..++.+.++.++.|. -+++-+-- ...+.++-=++-++.+++.|+|
T Consensus 111 GidvfRiFDAl-------------ND----~RNl~~ai~a~kk~G~--h~q~~i~YT~sPvHt~e~yv~~akel~~~g~D 171 (472)
T COG5016 111 GIDVFRIFDAL-------------ND----VRNLKTAIKAAKKHGA--HVQGTISYTTSPVHTLEYYVELAKELLEMGVD 171 (472)
T ss_pred CCcEEEechhc-------------cc----hhHHHHHHHHHHhcCc--eeEEEEEeccCCcccHHHHHHHHHHHHHcCCC
Confidence 99999998874 12 3344555555554443 33332211 1246677788999999999999
Q ss_pred EEEec---cCCCHHHHHHHHHhCCC-CceeeeeeccCCCCCCCCH---HHHHhcCCCEEeccchHHH--HHHHHHHHHHH
Q 012815 256 VLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNP---LELEELGFKLVAYPLSLIG--VSVRAMQDALT 326 (456)
Q Consensus 256 ~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~~~~~g~tp~lt~---~eL~elGv~~Vs~p~~ll~--aa~~A~~~~l~ 326 (456)
.|.|- |+-++.++.++++.+.. +|+++++- . ..|..++. ----++|+.++=...+.+. .+.-+.+....
T Consensus 172 SIciKDmaGlltP~~ayelVk~iK~~~~~pv~lH-t-H~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~ 249 (472)
T COG5016 172 SICIKDMAGLLTPYEAYELVKAIKKELPVPVELH-T-HATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVA 249 (472)
T ss_pred EEEeecccccCChHHHHHHHHHHHHhcCCeeEEe-c-ccccchHHHHHHHHHHhCcchhhhhhccccCCCCCCcHHHHHH
Confidence 99985 34455555544433211 23444432 1 12334443 2234678777644433322 23334444444
Q ss_pred HHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHcccccccCccccCCCCCCCCCcceeeEEEEEEecCCCceeeccccCc
Q 012815 327 AIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENGGSRDAFSGIWSRTLRVKITGRDGFEKLDVRIPA 406 (456)
Q Consensus 327 ~i~~g~~~~~~~~~~~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (456)
+|++...+ .....+++.++. +.+.+..++|...-++...+ ..+ |.| -.-||-
T Consensus 250 aL~gt~yD---tgld~~~l~~~~--~yf~~vrkkY~~~~~~~~~~-~d~---------~il-------------i~qvPG 301 (472)
T COG5016 250 ALRGTGYD---TGLDLELLEEIA--EYFREVRKKYKGLLEPQAKG-VDP---------RIL-------------IYQVPG 301 (472)
T ss_pred HhcCCCCC---ccccHHHHHHHH--HHHHHHHHHHhhccCccccC-CCC---------cce-------------EeeCCh
Confidence 45542211 123334443332 44667888895322221111 111 222 234788
Q ss_pred ccchhhhhhccccccccHHHHhhhhh
Q 012815 407 GFLDGITNVVPALGGVNLKELLNDAA 432 (456)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (456)
|-| ||.+-+|---|....|+..-
T Consensus 302 GMl---SNl~sQLkeqnaldK~~eVL 324 (472)
T COG5016 302 GML---SNLESQLKEQNALDKLEEVL 324 (472)
T ss_pred HHH---HHHHHHHHHcchhhHHHHHH
Confidence 875 67777777777766666553
No 432
>PLN02591 tryptophan synthase
Probab=84.28 E-value=30 Score=34.69 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=58.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEeCCCC-C--CCCccCCCCccc-----------cCHHHHHHHHHHHHHHhHhhCCC
Q 012815 159 NGYGNAMNVKRTVKGYIKAGFAGIILEDQV-S--PKGCGHTRGRKV-----------VSREEAVMRIKAAVDARKESGSD 224 (456)
Q Consensus 159 tGYG~~~nv~rtVk~l~~AGaaGI~IEDq~-~--pK~CGH~~gk~l-----------vp~ee~v~kI~AA~~Ar~~~G~d 224 (456)
.||-+.+...+.++.+.++||+.|-| +. + |. .+|..+ +..+...+-++..+ ++...+
T Consensus 10 aG~P~~e~~~~~~~~l~~~Gad~iEl--GiPfSDP~----aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r---~~~~~p 80 (250)
T PLN02591 10 AGDPDLDTTAEALRLLDACGADVIEL--GVPYSDPL----ADGPVIQAAATRALEKGTTLDSVISMLKEVA---PQLSCP 80 (250)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCc----ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHh---cCCCCC
Confidence 47777788888899999999998866 33 1 11 122111 12222223332222 222234
Q ss_pred eEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHH
Q 012815 225 IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFC 272 (456)
Q Consensus 225 fvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~ 272 (456)
+++..=..-.-..++|.-+++| .++|+|.+.++-++- ||..++.
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~---~~aGv~GviipDLP~-ee~~~~~ 124 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATI---KEAGVHGLVVPDLPL-EETEALR 124 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHH---HHcCCCEEEeCCCCH-HHHHHHH
Confidence 5555544443456777766665 489999999999874 4444444
No 433
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.15 E-value=4.3 Score=41.48 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=43.7
Q ss_pred HHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 244 RRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
+.+..++++|||.|.++... .+++++.++.++. ..+ ++..|....-+..++++.|+..++.+.
T Consensus 205 eea~ea~~~gaDiI~LDn~s-~e~l~~av~~~~~-~~~---leaSGGI~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 205 DQLEEALELGVDAVLLDNMT-PDTLREAVAIVAG-RAI---TEASGRITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred HHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHhCC-Cce---EEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 34555668999999999874 4788888887652 122 232232222456899999999999876
No 434
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=84.14 E-value=9.3 Score=47.64 Aligned_cols=104 Identities=21% Similarity=0.390 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccH
Q 012815 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (456)
Q Consensus 160 GYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~l 239 (456)
++++++.+.+.++++.+.|...+||-= |+. .+.++-+++|++++++. |+++. =|-|+......
T Consensus 1087 ~~~~~~~~~~~a~~~~~~Gf~~~KlKv-------G~~-----~~~~~D~~~i~alRe~~---G~~~~--LrlDAN~~ws~ 1149 (1655)
T PLN02980 1087 SNGSPLEVAYVARKLVEEGFSAIKLKV-------GRR-----VSPIQDAAVIQEVRKAV---GYQIE--LRADANRNWTY 1149 (1655)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEec-------CCC-----CCHHHHHHHHHHHHHHc---CCCCe--EEEECCCCCCH
Confidence 345777888888889899999999932 221 12355578888887664 55554 37788888889
Q ss_pred HHHHHHHHHhHhcCCCEEEeccC-CCHHHHHHHHHhCCCCceeee
Q 012815 240 EESLRRSRAFADAGADVLFIDAL-ASKEEMKAFCEISPLVPKMAN 283 (456)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~-~s~eei~~i~~~v~~vP~~~N 283 (456)
++|++.++++.+.+ .-|+|-+ ++.+++.++++..+ +|+.+.
T Consensus 1150 ~~A~~~~~~L~~~~--i~~iEqPl~~~~~l~~l~~~~~-iPIA~D 1191 (1655)
T PLN02980 1150 EEAIEFGSLVKSCN--LKYIEEPVQDEDDLIKFCEETG-LPVALD 1191 (1655)
T ss_pred HHHHHHHHHHhhcC--CCEEECCCCCHHHHHHHHHhCC-CCEEeC
Confidence 99999999998864 5688864 56788999988876 676543
No 435
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=84.00 E-value=6.6 Score=41.24 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=62.2
Q ss_pred HHHHHhHhcCCCEEEec---------cCCCHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchH
Q 012815 244 RRSRAFADAGADVLFID---------ALASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (456)
Q Consensus 244 ~RakAy~eAGAD~Ifie---------~~~s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~l 313 (456)
+.++...++|||.|.+- ++.+.+.+.++.+.+. .+|++++ +|-....+.-+.-.+|.+-|.++..+
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iGr~~ 308 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD----SGVRRGEHVFKALASGADAVAVGRPV 308 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 56778889999999992 2334567778877763 3666543 34333334444445999999999987
Q ss_pred HHHH----HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHH
Q 012815 314 IGVS----VRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEE 357 (456)
Q Consensus 314 l~aa----~~A~~~~l~~i~~g~~~~~~~~~~~~e~~~lvg~~~~~~~ 357 (456)
+.+. ...+.++++.|++. ++....++|.....++
T Consensus 309 l~~la~~G~~gv~~~l~~l~~E----------l~~~m~l~G~~~i~el 346 (351)
T cd04737 309 LYGLALGGAQGVASVLEHLNKE----------LKIVMQLAGTRTIEDV 346 (351)
T ss_pred HHHHhhchHHHHHHHHHHHHHH----------HHHHHHHHCCCCHHHh
Confidence 7754 33445555555432 3455555666655554
No 436
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.94 E-value=21 Score=35.23 Aligned_cols=123 Identities=17% Similarity=0.218 Sum_probs=78.0
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEe
Q 012815 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (456)
Q Consensus 151 iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiAR 230 (456)
+||+-. -+++++.+.++.+.+.|+..+-|-=.+ +...+.|+..++...+-.+++.|=|=
T Consensus 18 i~Vvr~-----~~~~~a~~~~~al~~gGi~~iEiT~~t----------------p~a~~~i~~l~~~~~~~~p~~~vGaG 76 (222)
T PRK07114 18 VPVFYH-----ADVEVAKKVIKACYDGGARVFEFTNRG----------------DFAHEVFAELVKYAAKELPGMILGVG 76 (222)
T ss_pred EEEEEc-----CCHHHHHHHHHHHHHCCCCEEEEeCCC----------------CcHHHHHHHHHHHHHhhCCCeEEeeE
Confidence 777763 257789999999999999988775432 11233444444322211356666555
Q ss_pred cchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHH---HHhcCCCEE
Q 012815 231 TDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE---LEELGFKLV 307 (456)
Q Consensus 231 TDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~e---L~elGv~~V 307 (456)
|=-. .+.+++..++||+-++-++.. .++-+.+++.. +|.+ ||. +|+.| ..++|++.|
T Consensus 77 TVl~--------~e~a~~a~~aGA~FiVsP~~~--~~v~~~~~~~~-i~~i------PG~---~TpsEi~~A~~~Ga~~v 136 (222)
T PRK07114 77 SIVD--------AATAALYIQLGANFIVTPLFN--PDIAKVCNRRK-VPYS------PGC---GSLSEIGYAEELGCEIV 136 (222)
T ss_pred eCcC--------HHHHHHHHHcCCCEEECCCCC--HHHHHHHHHcC-CCEe------CCC---CCHHHHHHHHHCCCCEE
Confidence 5322 256778889999999998865 46777777654 5543 342 45544 567999988
Q ss_pred ec-cchHH
Q 012815 308 AY-PLSLI 314 (456)
Q Consensus 308 s~-p~~ll 314 (456)
-+ |-..+
T Consensus 137 KlFPA~~~ 144 (222)
T PRK07114 137 KLFPGSVY 144 (222)
T ss_pred EECccccc
Confidence 55 64444
No 437
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=83.89 E-value=61 Score=34.75 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=80.0
Q ss_pred HHHHHHhc-cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 141 QGQLITQA-VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 141 ~~r~I~ra-~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
.++.|.+. .+.||.+|+=.= ++.+.. ++.+.++||+.+.+=-.. + .+.+++++++.+
T Consensus 216 iVk~Lr~~~~~~~I~~DLK~~--Di~~~v--v~~~a~aGAD~vTVH~ea--------------~----~~ti~~ai~~ak 273 (391)
T PRK13307 216 VISKIREVRPDAFIVADLKTL--DTGNLE--ARMAADATADAVVISGLA--------------P----ISTIEKAIHEAQ 273 (391)
T ss_pred HHHHHHHhCCCCeEEEEeccc--ChhhHH--HHHHHhcCCCEEEEeccC--------------C----HHHHHHHHHHHH
Confidence 45666665 578888886543 443322 778889999999883321 1 113444555555
Q ss_pred hhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEecc-C------CCHHHHHHHHHhCCCCceeeeeeccCCCCC
Q 012815 220 ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA-L------ASKEEMKAFCEISPLVPKMANMLEGGGKTP 292 (456)
Q Consensus 220 ~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~-~------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp 292 (456)
+.|....| |...... .+++.+.+ ..|.|.|.+.. + +..+.++++.+....+++. + .||-++
T Consensus 274 k~GikvgV----D~lnp~t---p~e~i~~l-~~~vD~Vllht~vdp~~~~~~~~kI~~ikk~~~~~~I~---V-dGGI~~ 341 (391)
T PRK13307 274 KTGIYSIL----DMLNVED---PVKLLESL-KVKPDVVELHRGIDEEGTEHAWGNIKEIKKAGGKILVA---V-AGGVRV 341 (391)
T ss_pred HcCCEEEE----EEcCCCC---HHHHHHHh-hCCCCEEEEccccCCCcccchHHHHHHHHHhCCCCcEE---E-ECCcCH
Confidence 55532222 2222222 23555555 67899998874 2 2223455554432222322 1 234443
Q ss_pred CCCHHHHHhcCCCEEeccchHHHH
Q 012815 293 ILNPLELEELGFKLVAYPLSLIGV 316 (456)
Q Consensus 293 ~lt~~eL~elGv~~Vs~p~~ll~a 316 (456)
=+..++.+.|+..++.|..++.+
T Consensus 342 -eti~~l~~aGADivVVGsaIf~a 364 (391)
T PRK13307 342 -ENVEEALKAGADILVVGRAITKS 364 (391)
T ss_pred -HHHHHHHHcCCCEEEEeHHHhCC
Confidence 35788899999999999887653
No 438
>PLN02321 2-isopropylmalate synthase
Probab=83.89 E-value=9.7 Score=43.07 Aligned_cols=109 Identities=19% Similarity=0.120 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHhcc---CC-cEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHH
Q 012815 133 ISYGEMVDQGQLITQAV---SI-PVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEA 207 (456)
Q Consensus 133 lt~~Eml~~~r~I~ra~---~i-PVIaD~DtGYG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~ 207 (456)
.|.+|.++.+..+.+.. +. -+..++|+++- ++..+.+.++.++++||.-|+|-|.+ | ...++++
T Consensus 203 ~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTv-----G------~~~P~~v 271 (632)
T PLN02321 203 KTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTV-----G------YTLPSEF 271 (632)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccc-----c------CCCHHHH
Confidence 68889888877765533 34 48899988765 57889999999999999999999986 2 3345677
Q ss_pred HHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 208 VMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 208 v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
.+.|+..++..... ++..|=.-+ -+++--|+.=+.+..+|||+.|
T Consensus 272 ~~li~~l~~~~~~~-~~v~i~vH~----HND~GlAvANslaAv~AGA~~V 316 (632)
T PLN02321 272 GQLIADIKANTPGI-ENVIISTHC----QNDLGLSTANTLAGAHAGARQV 316 (632)
T ss_pred HHHHHHHHHhcCCC-CCceEEEEe----CCCCCHHHHHHHHHHHhCCCEE
Confidence 77777776543210 012221111 1122334555666667777764
No 439
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=83.85 E-value=35 Score=35.39 Aligned_cols=87 Identities=13% Similarity=0.030 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCcEEEec---chHHhh----hhcccCCCCCCCHHH----HHHHHHHHHhccC--CcEEE-----e-CCCC
Q 012815 100 LSAKLVEKSGFSFCFTS---GFSISA----ARLALPDTGFISYGE----MVDQGQLITQAVS--IPVIG-----D-GDNG 160 (456)
Q Consensus 100 lSArl~e~aGfdAI~vS---G~avSa----s~lG~PD~~~lt~~E----ml~~~r~I~ra~~--iPVIa-----D-~DtG 160 (456)
-.|+.+.++|||+|-+- |+-++. ...-..|.--=+++. +++.+++|.++++ .||.+ | .+.|
T Consensus 145 ~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G 224 (343)
T cd04734 145 DAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGG 224 (343)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCC
Confidence 57788889999999776 332221 111222321124443 3445666666665 34333 1 1122
Q ss_pred CCCHHHHHHHHHHHHHhC-ccEEEeCCC
Q 012815 161 YGNAMNVKRTVKGYIKAG-FAGIILEDQ 187 (456)
Q Consensus 161 YG~~~nv~rtVk~l~~AG-aaGI~IEDq 187 (456)
+ +.++..+.++.++++| ++.|+|-..
T Consensus 225 ~-~~~e~~~~~~~l~~~G~vd~i~vs~g 251 (343)
T cd04734 225 L-SPDEALEIAARLAAEGLIDYVNVSAG 251 (343)
T ss_pred C-CHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 2 3567788999999998 899999543
No 440
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=83.74 E-value=31 Score=34.85 Aligned_cols=165 Identities=21% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
|+..+++|++.+.+==+ ... ..+.++.|++.+++||.+ |+-... +.++.+.++||..
T Consensus 44 A~~~~~~Ga~~lHvVDL---------------g~~-n~~~i~~i~~~~~~~v~v------GGGIr~-e~v~~~l~aGa~r 100 (253)
T TIGR02129 44 AKLYKDDGVKGCHVIML---------------GPN-NDDAAKEALHAYPGGLQV------GGGIND-TNAQEWLDEGASH 100 (253)
T ss_pred HHHHHHcCCCEEEEEEC---------------CCC-cHHHHHHHHHhCCCCEEE------eCCcCH-HHHHHHHHcCCCE
Q ss_pred EEeCCCCCCCCccCCCCccccCHHHHHHH----HHHHHHHhHhhCCCeEEE---Ee----------cchhhcccHHHHH-
Q 012815 182 IILEDQVSPKGCGHTRGRKVVSREEAVMR----IKAAVDARKESGSDIVIV---AR----------TDSRQALSLEESL- 243 (456)
Q Consensus 182 I~IEDq~~pK~CGH~~gk~lvp~ee~v~k----I~AA~~Ar~~~G~dfvIi---AR----------TDA~~~~~ldeAI- 243 (456)
|.|-... +.+ ..-..+..+..|++-+++ +| |+.-....=-+.+
T Consensus 101 VvIGS~a-------------------v~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~ 161 (253)
T TIGR02129 101 VIVTSWL-------------------FTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNA 161 (253)
T ss_pred EEECcHH-------------------HhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHH
Q ss_pred HHHHHhHhcCCCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhc--CCCEEeccchH
Q 012815 244 RRSRAFADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL--GFKLVAYPLSL 313 (456)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~el--Gv~~Vs~p~~l 313 (456)
+-++.|.+. +--|++-.+ ++.+.++++++... +|+.+. ||-...-...+|+++ |..-++.+-++
T Consensus 162 e~~~~~~~~-~~~il~TdI~rDGtl~G~dlel~~~l~~~~~-ipVIAS----GGv~s~eDi~~l~~~~~g~~~aIvG~Al 235 (253)
T TIGR02129 162 ETLEELSKY-CDEFLIHAADVEGLCKGIDEELVSKLGEWSP-IPITYA----GGAKSIDDLDLVDELSKGKVDLTIGSAL 235 (253)
T ss_pred HHHHHHHhh-CCEEEEeeecccCccccCCHHHHHHHHhhCC-CCEEEE----CCCCCHHHHHHHHHhcCCCCcEEeeehH
Q ss_pred H
Q 012815 314 I 314 (456)
Q Consensus 314 l 314 (456)
+
T Consensus 236 f 236 (253)
T TIGR02129 236 D 236 (253)
T ss_pred H
No 441
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=83.73 E-value=29 Score=33.84 Aligned_cols=122 Identities=21% Similarity=0.275 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHH
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeA 242 (456)
+++++.+.++.+.+.|+..+-|-=.. +...+-|+.+++. . +++.|=|=|=-.
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t----------------~~a~~~i~~l~~~---~-~~~~vGAGTVl~-------- 69 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRT----------------PVALDAIRLLRKE---V-PDALIGAGTVLN-------- 69 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC----------------ccHHHHHHHHHHH---C-CCCEEEEEeCCC--------
Confidence 56788999999999999988774432 1223334444332 2 466776666332
Q ss_pred HHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHH---HHhcCCCEEe-ccchHHH--H
Q 012815 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE---LEELGFKLVA-YPLSLIG--V 316 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~e---L~elGv~~Vs-~p~~ll~--a 316 (456)
.+.++.+.+|||+-++-++.. .++.+.+++.. +|.+ ||. +|+.| ..++|++.|- ||-..+. .
T Consensus 70 ~~~a~~a~~aGA~FivsP~~~--~~v~~~~~~~~-i~~i------PG~---~TptEi~~A~~~Ga~~vKlFPA~~~GG~~ 137 (204)
T TIGR01182 70 PEQLRQAVDAGAQFIVSPGLT--PELAKHAQDHG-IPII------PGV---ATPSEIMLALELGITALKLFPAEVSGGVK 137 (204)
T ss_pred HHHHHHHHHcCCCEEECCCCC--HHHHHHHHHcC-CcEE------CCC---CCHHHHHHHHHCCCCEEEECCchhcCCHH
Confidence 256888889999999988864 36666677654 5543 332 45544 5679999875 5655553 3
Q ss_pred HHHHHHHH
Q 012815 317 SVRAMQDA 324 (456)
Q Consensus 317 a~~A~~~~ 324 (456)
-+++++.-
T Consensus 138 yikal~~p 145 (204)
T TIGR01182 138 MLKALAGP 145 (204)
T ss_pred HHHHHhcc
Confidence 44555433
No 442
>PRK08999 hypothetical protein; Provisional
Probab=83.64 E-value=19 Score=36.25 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHH
Q 012815 128 PDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEA 207 (456)
Q Consensus 128 PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~ 207 (456)
++...-.+.+.+...+.+++..+++++++ ..++...+.|++|||+.....|
T Consensus 166 k~~~~~~~~~~~~~l~~~~~~~~~~liin------------d~~~la~~~~~~GvHl~~~d~~----------------- 216 (312)
T PRK08999 166 PQLPPAAYRALARAALGLCRRAGAQLLLN------------GDPELAEDLGADGVHLTSAQLA----------------- 216 (312)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEEE------------CcHHHHHhcCCCEEEcChhhcC-----------------
Q ss_pred HHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC-----------CCHHHHHHHHHhCC
Q 012815 208 VMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISP 276 (456)
Q Consensus 208 v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~-----------~s~eei~~i~~~v~ 276 (456)
...++. .+++.+|-.-+-. ++.++...+.|||.|++-.+ ...+.++++++.+.
T Consensus 217 ------~~~~r~-~~~~~~ig~S~h~---------~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~ 280 (312)
T PRK08999 217 ------ALAARP-LPAGRWVAASCHD---------AEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVP 280 (312)
T ss_pred ------hHhhcc-CCCCCEEEEecCC---------HHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCC
Q ss_pred CCceeeeeeccCCCCCCCCHHHHHhcCCCEE
Q 012815 277 LVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (456)
Q Consensus 277 ~vP~~~N~~~~~g~tp~lt~~eL~elGv~~V 307 (456)
+|+.+= |....-+..++.+.|+..|
T Consensus 281 -~Pv~Ai-----GGI~~~~~~~~~~~g~~gv 305 (312)
T PRK08999 281 -LPVYAL-----GGLGPGDLEEAREHGAQGI 305 (312)
T ss_pred -CCEEEE-----CCCCHHHHHHHHHhCCCEE
No 443
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=83.64 E-value=36 Score=34.08 Aligned_cols=148 Identities=14% Similarity=0.045 Sum_probs=79.2
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
|+.++++|++.|=++-.+.+. .....-....+ .+.+..+..... .+.++.+=...+-.+ .+.++...+.|+..
T Consensus 26 a~~L~~~GVd~IEvG~~~~~~-~~~~~~~~~~~-~~~~~~i~~~~~-~~~~~~~~~~~~~~~----~~~l~~a~~~gv~~ 98 (266)
T cd07944 26 YRALAAAGIDYVEIGYRSSPE-KEFKGKSAFCD-DEFLRRLLGDSK-GNTKIAVMVDYGNDD----IDLLEPASGSVVDM 98 (266)
T ss_pred HHHHHHCCCCEEEeecCCCCc-cccCCCccCCC-HHHHHHHHhhhc-cCCEEEEEECCCCCC----HHHHHHHhcCCcCE
Confidence 456788999999776212111 11111112222 333333333321 134554433333222 34556677889999
Q ss_pred EEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec-
Q 012815 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID- 260 (456)
Q Consensus 182 I~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie- 260 (456)
|+|-... -. ++++..+++..++.|- .+...=.|+.. ...+..++-++.+.++|||.|.+.
T Consensus 99 iri~~~~-------------~~----~~~~~~~i~~ak~~G~-~v~~~~~~a~~-~~~~~~~~~~~~~~~~g~~~i~l~D 159 (266)
T cd07944 99 IRVAFHK-------------HE----FDEALPLIKAIKEKGY-EVFFNLMAISG-YSDEELLELLELVNEIKPDVFYIVD 159 (266)
T ss_pred EEEeccc-------------cc----HHHHHHHHHHHHHCCC-eEEEEEEeecC-CCHHHHHHHHHHHHhCCCCEEEEec
Confidence 9996532 02 3333333333333343 23333344433 456788888999999999999875
Q ss_pred --cCCCHHHHHHHHHhC
Q 012815 261 --ALASKEEMKAFCEIS 275 (456)
Q Consensus 261 --~~~s~eei~~i~~~v 275 (456)
|.-+++++.++.+.+
T Consensus 160 T~G~~~P~~v~~lv~~l 176 (266)
T cd07944 160 SFGSMYPEDIKRIISLL 176 (266)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 345667777666543
No 444
>PLN02979 glycolate oxidase
Probab=83.55 E-value=4.8 Score=42.62 Aligned_cols=93 Identities=18% Similarity=0.157 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEe
Q 012815 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (456)
Q Consensus 77 ~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD 156 (456)
.-+.||+. .+.|+++=|+-+.-.|+.+.++|+++|.+|+.+- ...|...-|.+-+.+..+.+. -.+||++|
T Consensus 214 dl~wlr~~--~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGG-----rqld~~p~t~~~L~ei~~~~~--~~~~Vi~d 284 (366)
T PLN02979 214 DVQWLQTI--TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGA-----RQLDYVPATISALEEVVKATQ--GRIPVFLD 284 (366)
T ss_pred HHHHHHhc--cCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCc-----CCCCCchhHHHHHHHHHHHhC--CCCeEEEe
Confidence 34445553 3468999999999999999999999999997662 224544333333322222221 24999988
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 157 GDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 157 ~DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
. |.-+..++. |. ...||.+|.|
T Consensus 285 G--GIr~G~Di~---KA-LALGAdaV~i 306 (366)
T PLN02979 285 G--GVRRGTDVF---KA-LALGASGIFI 306 (366)
T ss_pred C--CcCcHHHHH---HH-HHcCCCEEEE
Confidence 3 332333343 33 3479999988
No 445
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=83.54 E-value=21 Score=36.39 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=94.3
Q ss_pred HHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCC----CCC-HHHHHHHHHHHHHh
Q 012815 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG----YGN-AMNVKRTVKGYIKA 177 (456)
Q Consensus 103 rl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtG----YG~-~~nv~rtVk~l~~A 177 (456)
+.+.++|.+++.+. .+++ .++.|+... ++|+|+=...- +.+ .....-+|+..+++
T Consensus 50 ~~v~~~g~dav~~~-~G~~--~~~~~~y~~-----------------dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~l 109 (265)
T COG1830 50 AKVAEAGADAVAMT-PGIA--RSVHRGYAH-----------------DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRL 109 (265)
T ss_pred HHHHhcCCCEEEec-HhHH--hhcCccccC-----------------CcCEEEEeccccccCCCcccceeeeeHHHHHhC
Confidence 34456789999887 2333 245555431 35555433332 111 12355677888899
Q ss_pred CccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEE--Eecchhhc---ccHHHHHHHHHHhHhc
Q 012815 178 GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV--ARTDSRQA---LSLEESLRRSRAFADA 252 (456)
Q Consensus 178 GaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIi--ARTDA~~~---~~ldeAI~RakAy~eA 252 (456)
||++|-.-=-. |.. +..++++.|..+++.+++.|-.+++. -|...... .+-+..---++.-+|.
T Consensus 110 gadAV~~~Vy~-----Gse------~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaael 178 (265)
T COG1830 110 GADAVGATVYV-----GSE------TEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAEL 178 (265)
T ss_pred CCcEEEEEEec-----CCc------chHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHh
Confidence 99887652221 111 22678899999999888877666653 34443311 2223333346677899
Q ss_pred CCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCC
Q 012815 253 GADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKT 291 (456)
Q Consensus 253 GAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~t 291 (456)
|||.|=..-+.+.+.++++.+.-+ +|++ +.+|.|+
T Consensus 179 GADIiK~~ytg~~e~F~~vv~~~~-vpVv---iaGG~k~ 213 (265)
T COG1830 179 GADIIKTKYTGDPESFRRVVAACG-VPVV---IAGGPKT 213 (265)
T ss_pred cCCeEeecCCCChHHHHHHHHhCC-CCEE---EeCCCCC
Confidence 999999988888899999998877 7764 2454444
No 446
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=83.54 E-value=13 Score=38.71 Aligned_cols=167 Identities=26% Similarity=0.312 Sum_probs=101.3
Q ss_pred eecccCChHHHHHHH------HhCCcEEEecchHHhhhhcccCCC-CCCCHH---HHHHHHHHHHhcc-CCcEEEeC---
Q 012815 92 QGPACFDALSAKLVE------KSGFSFCFTSGFSISAARLALPDT-GFISYG---EMVDQGQLITQAV-SIPVIGDG--- 157 (456)
Q Consensus 92 v~pgayDalSArl~e------~aGfdAI~vSG~avSas~lG~PD~-~~lt~~---Eml~~~r~I~ra~-~iPVIaD~--- 157 (456)
.|||.|=..--.+++ +.|.+++.+=|.. . . .|. +.-.++ =+...++.|.+.+ ++-||+|.
T Consensus 41 sMPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~---~-~--Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc 114 (314)
T cd00384 41 SMPGVYRLSVDSLVEEAEELADLGIRAVILFGIP---E-H--KDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLC 114 (314)
T ss_pred CCCCceeeCHHHHHHHHHHHHHCCCCEEEEECCC---C-C--CCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeecc
Confidence 577776544444433 3588888875431 0 1 121 211222 2455677777776 57788884
Q ss_pred ---CCCC------C---CHHHHH---HHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhC
Q 012815 158 ---DNGY------G---NAMNVK---RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (456)
Q Consensus 158 ---DtGY------G---~~~nv~---rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G 222 (456)
++|+ | |...+. +.+-.+.+|||+-|-=-|- ++| ||.|++++-++.|
T Consensus 115 ~YT~hGHcGil~~~~idND~Tl~~L~k~Als~A~AGADiVAPSdM--------MDG-----------rV~aIR~aLd~~g 175 (314)
T cd00384 115 EYTDHGHCGILKDDYVDNDATLELLAKIAVSHAEAGADIVAPSDM--------MDG-----------RVAAIREALDEAG 175 (314)
T ss_pred CCCCCCcceeccCCcCccHHHHHHHHHHHHHHHHcCCCeeecccc--------ccc-----------HHHHHHHHHHHCC
Confidence 3342 1 333333 3444556899977654442 333 5555555555434
Q ss_pred -CCeEEEEecchhhc--------------------------ccHHHHHHHHHHhHhcCCCEEEe-ccCCCHHHHHHHHHh
Q 012815 223 -SDIVIVARTDSRQA--------------------------LSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFCEI 274 (456)
Q Consensus 223 -~dfvIiARTDA~~~--------------------------~~ldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i~~~ 274 (456)
.+.-|.+-+--++. ..-.||++.+..=.+-|||+|+| |+++-.+.++++.+.
T Consensus 176 ~~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~ 255 (314)
T cd00384 176 FSDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKPALAYLDIIRDVRER 255 (314)
T ss_pred CCCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHHHh
Confidence 24566665433210 12688999999999999999999 789999999999998
Q ss_pred CCCCceeeee
Q 012815 275 SPLVPKMANM 284 (456)
Q Consensus 275 v~~vP~~~N~ 284 (456)
+. +|+.+=.
T Consensus 256 ~~-~PvaaYq 264 (314)
T cd00384 256 FD-LPVAAYN 264 (314)
T ss_pred cC-CCEEEEE
Confidence 86 7875433
No 447
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=83.53 E-value=36 Score=34.13 Aligned_cols=180 Identities=19% Similarity=0.189 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHhc----cCCcEEEeCCCCCC--CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCC-ccccCHH
Q 012815 133 ISYGEMVDQGQLITQA----VSIPVIGDGDNGYG--NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRG-RKVVSRE 205 (456)
Q Consensus 133 lt~~Eml~~~r~I~ra----~~iPVIaD~DtGYG--~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~g-k~lvp~e 205 (456)
..++.++++.+.+.+. .++|||+-.- |+. ......+.++++. +||+++-|.=. |-|..+ ..+-..+
T Consensus 75 ~g~~~~~~~~~~~~~~~~~~~~~pvi~Si~-~~~~~~~~d~~~~a~~~~-~~ad~lElN~S-----cPn~~~~~~~~~~~ 147 (295)
T PF01180_consen 75 PGLEYYLERLRPILKEAKKDVDIPVIASIN-GDSEEEIEDWAELAKRLE-AGADALELNLS-----CPNVPGGRPFGQDP 147 (295)
T ss_dssp SHHHHHHHHHHHTHHHTTCH-CEEEEEEE--TSSSGHHHHHHHHHHHHH-HHCSEEEEEST-----STTSTTSGGGGGHH
T ss_pred HHHHHHHHHHHHHhhhcccccceeEEEEee-cCCchhHHHHHHHHHHhc-CcCCceEEEee-----ccCCCCccccccCH
Confidence 3456677776666544 3689997642 322 2467778888888 89999977643 555433 3455566
Q ss_pred HHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEe----c--------c-----------C
Q 012815 206 EAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI----D--------A-----------L 262 (456)
Q Consensus 206 e~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifi----e--------~-----------~ 262 (456)
+....|..++.... +.=|..+--.... . .+..+.+....+.|+|+|.. . . +
T Consensus 148 ~~~~~i~~~v~~~~----~~Pv~vKL~p~~~-~-~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGl 221 (295)
T PF01180_consen 148 ELVAEIVRAVREAV----DIPVFVKLSPNFT-D-IEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGL 221 (295)
T ss_dssp HHHHHHHHHHHHHH----SSEEEEEE-STSS-C-HHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEE
T ss_pred HHHHHHHHHHHhcc----CCCEEEEecCCCC-c-hHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCc
Confidence 67777766666543 2333434322110 1 12245555566899998771 1 0 0
Q ss_pred -------CCHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHH
Q 012815 263 -------ASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIK 329 (456)
Q Consensus 263 -------~s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~ 329 (456)
.....++++.+.++ .+|+. ..+|-...-+..|+-.+|.+.|-....++..-...+++..+.|.
T Consensus 222 SG~~i~p~aL~~V~~~~~~~~~~i~Ii----g~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~ 292 (295)
T PF01180_consen 222 SGPAIRPIALRWVRELRKALGQDIPII----GVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINRELE 292 (295)
T ss_dssp EEGGGHHHHHHHHHHHHHHTTTSSEEE----EESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHhccccceEEE----EeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHHH
Confidence 02345556666665 34443 33453322234566778999999999888877777777766664
No 448
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=83.48 E-value=29 Score=36.38 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=51.2
Q ss_pred HHHHHHhHhcCCCEEEecc---------CCCHHHHHHHHH---hCC-CCceeeeeeccCCCCCCCCHHHHHhcCCCEEec
Q 012815 243 LRRSRAFADAGADVLFIDA---------LASKEEMKAFCE---ISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (456)
Q Consensus 243 I~RakAy~eAGAD~Ifie~---------~~s~eei~~i~~---~v~-~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~ 309 (456)
.+.++...++|||.|.+-+ +++.+.+.++.+ .+. .+|++ ..+|-....+.-+.-.+|.+.|.+
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi----~~GGIr~G~Dv~kalaLGA~aV~i 299 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVY----VDGGVRRGTDVLKALCLGAKAVGL 299 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEE----EeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3556777899999999754 233344444444 332 24433 334544445667778899999999
Q ss_pred cchHHHHHHH----HHHHHHHHHH
Q 012815 310 PLSLIGVSVR----AMQDALTAIK 329 (456)
Q Consensus 310 p~~ll~aa~~----A~~~~l~~i~ 329 (456)
+...+.+... .+.+.+..|+
T Consensus 300 G~~~l~~l~~~G~~gv~~~l~~l~ 323 (344)
T cd02922 300 GRPFLYALSAYGEEGVEKAIQILK 323 (344)
T ss_pred CHHHHHHHhhccHHHHHHHHHHHH
Confidence 9887776543 3444444444
No 449
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=83.24 E-value=8.1 Score=37.17 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=89.0
Q ss_pred HHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHh---ccC
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQ---AVS 150 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl----~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~r---a~~ 150 (456)
+.+++.+.. ..+.+..-++.-.-+. +..+|.+.+.+. +..-. . -. ..-..+.++.++.+..+.+ ..+
T Consensus 47 ~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~--~-~~-~~~~~~~~~~~~~~~~~v~~ak~~g 121 (237)
T PF00682_consen 47 RRLREALPN-ARLQALCRANEEDIERAVEAAKEAGIDIIRIFISVSDL--H-IR-KNLNKSREEALERIEEAVKYAKELG 121 (237)
T ss_dssp HHHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEETSHH--H-HH-HHTCSHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhcc-cccceeeeehHHHHHHHHHhhHhccCCEEEecCcccHH--H-HH-HhhcCCHHHHHHHHHHHHHHHHhcC
Confidence 344444444 3444443343333333 345899987776 21111 0 00 1123577777776655543 345
Q ss_pred CcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE
Q 012815 151 IPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (456)
Q Consensus 151 iPVIaD~DtGYG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA 229 (456)
..+.+-.++.+. ++..+.+.++.+.++|++.|.|-|.. | ...+++..+.+++.++.... ..+=+=+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~-----G------~~~P~~v~~lv~~~~~~~~~--~~l~~H~ 188 (237)
T PF00682_consen 122 YEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTV-----G------IMTPEDVAELVRALREALPD--IPLGFHA 188 (237)
T ss_dssp SEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETT-----S-------S-HHHHHHHHHHHHHHSTT--SEEEEEE
T ss_pred CceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCcc-----C------CcCHHHHHHHHHHHHHhccC--CeEEEEe
Confidence 677777766533 67889999999999999999999986 3 33556677777777665431 1222222
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 230 RTDSRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 230 RTDA~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
..|- + -|+.-+.+..+||||.|
T Consensus 189 Hnd~----G--la~An~laA~~aGa~~i 210 (237)
T PF00682_consen 189 HNDL----G--LAVANALAALEAGADRI 210 (237)
T ss_dssp BBTT----S---HHHHHHHHHHTT-SEE
T ss_pred cCCc----c--chhHHHHHHHHcCCCEE
Confidence 2222 2 35777888889999995
No 450
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=83.21 E-value=21 Score=36.41 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeC--------CCCCCCCccCCCCccccCHHH
Q 012815 135 YGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILE--------DQVSPKGCGHTRGRKVVSREE 206 (456)
Q Consensus 135 ~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IE--------Dq~~pK~CGH~~gk~lvp~ee 206 (456)
+++.....+...+..-+|-+. .||-+.+...+.++.+.++||+.+-|- |+....+-+...-+.-++.+.
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit---~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~ 80 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVT---AGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLED 80 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEe---CCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHH
Q ss_pred HHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHH--HHHHHHHhCCCCceeeee
Q 012815 207 AVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKE--EMKAFCEISPLVPKMANM 284 (456)
Q Consensus 207 ~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~e--ei~~i~~~v~~vP~~~N~ 284 (456)
..+-++.+++.-.+ .++++..=-.-....+++.-+++++ ++|+|.+.++-+|-++ ++...+++..--|.++-
T Consensus 81 ~lel~~~~r~~~~~--~Pivlm~Y~Npi~~~Gie~F~~~~~---~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lv- 154 (265)
T COG0159 81 TLELVEEIRAKGVK--VPIVLMTYYNPIFNYGIEKFLRRAK---EAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLV- 154 (265)
T ss_pred HHHHHHHHHhcCCC--CCEEEEEeccHHHHhhHHHHHHHHH---HcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEe-
Q ss_pred eccCCCCCCCCHHHHHhc
Q 012815 285 LEGGGKTPILNPLELEEL 302 (456)
Q Consensus 285 ~~~~g~tp~lt~~eL~el 302 (456)
+|..+.+.|+++
T Consensus 155 ------aPtt~~~rl~~i 166 (265)
T COG0159 155 ------APTTPDERLKKI 166 (265)
T ss_pred ------CCCCCHHHHHHH
No 451
>PRK00915 2-isopropylmalate synthase; Validated
Probab=83.09 E-value=17 Score=39.86 Aligned_cols=109 Identities=21% Similarity=0.160 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHh---ccCCcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHH
Q 012815 133 ISYGEMVDQGQLITQ---AVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAV 208 (456)
Q Consensus 133 lt~~Eml~~~r~I~r---a~~iPVIaD~DtGYG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v 208 (456)
.+.+|+++.+....+ ..+.-|.+++++++- ++..+.+.++.+.++|+.-|.|-|.+ |. ..++++.
T Consensus 113 ~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTv-----G~------~~P~~~~ 181 (513)
T PRK00915 113 MSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTV-----GY------TTPEEFG 181 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCC-----CC------CCHHHHH
Confidence 678888877765543 346778999998865 56779999999999999999999986 32 3456777
Q ss_pred HHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 209 MRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 209 ~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
+.|+..++..... .+..|-.. .-+++--|+.-+.+..+|||+.|
T Consensus 182 ~~i~~l~~~~~~~-~~v~l~~H----~HND~GlAvANslaAv~aGa~~V 225 (513)
T PRK00915 182 ELIKTLRERVPNI-DKAIISVH----CHNDLGLAVANSLAAVEAGARQV 225 (513)
T ss_pred HHHHHHHHhCCCc-ccceEEEE----ecCCCCHHHHHHHHHHHhCCCEE
Confidence 7777776543210 01111111 11222344555666667777754
No 452
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=83.08 E-value=6.9 Score=36.49 Aligned_cols=101 Identities=19% Similarity=0.284 Sum_probs=66.4
Q ss_pred ccccccccHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhc
Q 012815 69 TGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQA 148 (456)
Q Consensus 69 ~~~~~a~~~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra 148 (456)
+|...........|+++..+ .++-..||+.-.++.+++.|+|.+++|-.--+ .-.|+...+.++.+ +.+++.
T Consensus 76 vHl~~~~~~~~~~r~~~~~~-~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T---~sk~~~~~~g~~~l----~~~~~~ 147 (180)
T PF02581_consen 76 VHLGQSDLPPAEARKLLGPD-KIIGASCHSLEEAREAEELGADYVFLGPVFPT---SSKPGAPPLGLDGL----REIARA 147 (180)
T ss_dssp EEEBTTSSSHHHHHHHHTTT-SEEEEEESSHHHHHHHHHCTTSEEEEETSS-----SSSSS-TTCHHHHH----HHHHHH
T ss_pred EEecccccchHHhhhhcccc-eEEEeecCcHHHHHHhhhcCCCEEEECCccCC---CCCccccccCHHHH----HHHHHh
Confidence 44443333455677777554 67777999999999999999999999954322 24666655666654 556666
Q ss_pred cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012815 149 VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (456)
Q Consensus 149 ~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~I 184 (456)
..+||+| -|+. -.+++..+.++|+.|+-+
T Consensus 148 ~~~pv~A-----lGGI--~~~~i~~l~~~Ga~gvAv 176 (180)
T PF02581_consen 148 SPIPVYA-----LGGI--TPENIPELREAGADGVAV 176 (180)
T ss_dssp TSSCEEE-----ESS----TTTHHHHHHTT-SEEEE
T ss_pred CCCCEEE-----EcCC--CHHHHHHHHHcCCCEEEE
Confidence 7799998 4653 123345677899999864
No 453
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=83.05 E-value=59 Score=33.31 Aligned_cols=178 Identities=11% Similarity=0.081 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhC-ccEEEeCCCCCCCCccCCCCcc-c-cCHHHHH
Q 012815 133 ISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAG-FAGIILEDQVSPKGCGHTRGRK-V-VSREEAV 208 (456)
Q Consensus 133 lt~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AG-aaGI~IEDq~~pK~CGH~~gk~-l-vp~ee~v 208 (456)
...+.+++..+.+.+.. +.|||+-+ .|+ +.....+.++.++++| |++|-|-=. |-|..+.. + .+.+...
T Consensus 74 ~g~~~~~~~i~~~~~~~~~~pvI~Si-~G~-~~~~~~~~a~~~~~~g~ad~iElN~S-----cPn~~~~~~~g~d~~~~~ 146 (310)
T PRK02506 74 LGFDYYLDYVLELQKKGPNKPHFLSV-VGL-SPEETHTILKKIQASDFNGLVELNLS-----CPNVPGKPQIAYDFETTE 146 (310)
T ss_pred cCHHHHHHHHHHHHhhcCCCCEEEEE-EeC-cHHHHHHHHHHHhhcCCCCEEEEECC-----CCCCCCccccccCHHHHH
Confidence 45677887777766554 59999987 554 4556678888888898 999877543 55543322 1 1345554
Q ss_pred HHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEE----------Eec--c--C----C-------
Q 012815 209 MRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL----------FID--A--L----A------- 263 (456)
Q Consensus 209 ~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~I----------fie--~--~----~------- 263 (456)
+-+++++++.+ .++++-=.-+. ...+.-+-+....+.|++.| .++ . + .
T Consensus 147 ~i~~~v~~~~~---~Pv~vKlsp~~----~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlS 219 (310)
T PRK02506 147 QILEEVFTYFT---KPLGVKLPPYF----DIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIG 219 (310)
T ss_pred HHHHHHHHhcC---CccEEecCCCC----CHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCC
Confidence 55555554432 23333222221 11121222233345566543 121 0 0 0
Q ss_pred -------CHHHHHHHHHhCC-CCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHH
Q 012815 264 -------SKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI 328 (456)
Q Consensus 264 -------s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i 328 (456)
+...+.++.+.++ .+|+.. .+|-...-+.-|+-.+|...|-....++..-...+.+..+.|
T Consensus 220 G~~i~p~al~~v~~~~~~~~~~ipIig----~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 288 (310)
T PRK02506 220 GDYIKPTALANVRAFYQRLNPSIQIIG----TGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKEL 288 (310)
T ss_pred chhccHHHHHHHHHHHHhcCCCCCEEE----ECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHH
Confidence 1123333445553 245432 244433334556677898888887777765444555555555
No 454
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=83.01 E-value=41 Score=35.74 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=80.0
Q ss_pred HHHHHhccCCcEEEeCCCCC-C-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHH-Hh
Q 012815 142 GQLITQAVSIPVIGDGDNGY-G-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-AR 218 (456)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtGY-G-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~-Ar 218 (456)
+|++....+-||+.=+=--- | ++++..+.+.++...|++=|+ .|.. ...++..|.+|-+..+..+++ |.
T Consensus 118 ~R~~lgv~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IK-DDE~-------l~~q~~~p~~eRv~~~~~a~~~a~ 189 (366)
T cd08148 118 IRKLLGVYGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIK-DDET-------LTDQPFCPLRDRITEVAAALDRVQ 189 (366)
T ss_pred HHHHhCCCCCceeEeecccccCCCHHHHHHHHHHHHhCCCCccc-cccc-------cCCCCCCcHHHHHHHHHHHHHHHH
Confidence 66777777899987655442 5 678889999999999998654 2332 223456676665555544443 33
Q ss_pred HhhCCC--eEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCC-HHHHHHHHHhCC-CCcee
Q 012815 219 KESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEISP-LVPKM 281 (456)
Q Consensus 219 ~~~G~d--fvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~~v~-~vP~~ 281 (456)
++.|.. +.+|-- .+.+|.++|++...++|+.++++.-... ..-++.+++..+ .+|+.
T Consensus 190 ~eTG~~~~y~~NiT------~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~l~Ih 250 (366)
T cd08148 190 EETGEKKLYAVNVT------AGTFEIIERAERALELGANMLMVDVLTAGFSALQALAEDFEIDLPIH 250 (366)
T ss_pred HhhCCcceEEEEcc------CCHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHHhCcCCcEEE
Confidence 444422 222222 1237889999999999999999976543 445666666322 34543
No 455
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.94 E-value=42 Score=33.74 Aligned_cols=109 Identities=20% Similarity=0.237 Sum_probs=64.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCC-C--CCCccCCCCccc-----------cCHHHHHHHHHHHHHHh
Q 012815 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-S--PKGCGHTRGRKV-----------VSREEAVMRIKAAVDAR 218 (456)
Q Consensus 153 VIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~-~--pK~CGH~~gk~l-----------vp~ee~v~kI~AA~~Ar 218 (456)
+|.=+-.||-+.+...+.++.+.+.||+.|-| +. + |. .+|..+ +..++..+.++..++
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iEl--GiPfSDP~----aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~-- 85 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIEL--GIPFSDPV----ADGPVIQAASLRALAAGVTLADVFELVREIRE-- 85 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCc----ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh--
Confidence 45555568888888888899999999998866 33 1 11 122211 122233333333331
Q ss_pred HhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHH
Q 012815 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCE 273 (456)
Q Consensus 219 ~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~ 273 (456)
+....++++..=-.-.-..++|.-+++++ ++|+|.+.++.++- ||.+++.+
T Consensus 86 ~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~---~aGvdGviipDLp~-ee~~~~~~ 136 (258)
T PRK13111 86 KDPTIPIVLMTYYNPIFQYGVERFAADAA---EAGVDGLIIPDLPP-EEAEELRA 136 (258)
T ss_pred cCCCCCEEEEecccHHhhcCHHHHHHHHH---HcCCcEEEECCCCH-HHHHHHHH
Confidence 11223555555444444567777766654 78999999998874 56655553
No 456
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=82.90 E-value=35 Score=37.26 Aligned_cols=127 Identities=16% Similarity=0.240 Sum_probs=79.7
Q ss_pred HHHHHHhccCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHH-
Q 012815 141 QGQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA- 217 (456)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtG-YG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~A- 217 (456)
-+|++....+-||+.=+=-- -| ++.+.++.+..+...|++=|+ .|.. ...++..|.++-+..+..+++.
T Consensus 135 G~R~~lgv~~RPL~~tiiKP~iGlsp~~~A~~~~~~~~GGvD~IK-DDE~-------l~~~~~~p~~~Rv~~~~~a~~~a 206 (450)
T cd08212 135 VERDRLNKYGRPLLGCTIKPKLGLSAKNYGRVVYECLRGGLDFTK-DDEN-------INSQPFMRWRDRFLFVAEAVNKA 206 (450)
T ss_pred HHHHHhCCCCCceEEEeccCccCCCHHHHHHHHHHHHccCCcccc-cCcc-------CCCCCCCCHHHHHHHHHHHHHHH
Confidence 36777777889998876443 24 578888889999988888554 2332 2234566776665555555443
Q ss_pred hHhhCCC--eEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec---cCCCHHHHHHHHHhCCCCcee
Q 012815 218 RKESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFID---ALASKEEMKAFCEISPLVPKM 281 (456)
Q Consensus 218 r~~~G~d--fvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie---~~~s~eei~~i~~~v~~vP~~ 281 (456)
.++.|.. +.+|.- +...+|.++|++...++|+.++++. |......+++.++... +|+.
T Consensus 207 ~~eTG~~~~y~~NiT-----a~~~~em~~ra~~a~~~G~~~~mv~~~~G~~~l~~l~~~a~~~~-l~Ih 269 (450)
T cd08212 207 QAETGEVKGHYLNVT-----AGTMEEMYKRAEFAKELGSPIIMHDLLTGFTAIQSLAKWCRDNG-MLLH 269 (450)
T ss_pred HHhhCCcceeecccc-----CCCHHHHHHHHHHHHHhCCCeEeeecccccchHHHHHHHhhhcC-ceEE
Confidence 3334421 122211 1236899999999999999999987 4444445555444543 5554
No 457
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=82.72 E-value=7.6 Score=40.00 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=44.9
Q ss_pred HHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 244 RRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
+.++.++++|||.|.++... .++++++++..+. .+.+ ...||-+ .-+..++++.|+..++.+.
T Consensus 219 eea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~~-~~~i--eaSGGI~-~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 219 DELDQALKAGADIIMLDNFT-TEQMREAVKRTNG-RALL--EVSGNVT-LETLREFAETGVDFISVGA 281 (296)
T ss_pred HHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhcC-CeEE--EEECCCC-HHHHHHHHhcCCCEEEeCc
Confidence 44566778999999999876 4899999887653 2222 1223322 2457999999999999876
No 458
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=82.40 E-value=30 Score=36.09 Aligned_cols=168 Identities=25% Similarity=0.297 Sum_probs=97.2
Q ss_pred eeecccCChHHHHHHHH------hCCcEEEecchHHhhhhcccCC-CCCCCH--HH-HHHHHHHHHhcc-CCcEEEeC--
Q 012815 91 HQGPACFDALSAKLVEK------SGFSFCFTSGFSISAARLALPD-TGFISY--GE-MVDQGQLITQAV-SIPVIGDG-- 157 (456)
Q Consensus 91 lv~pgayDalSArl~e~------aGfdAI~vSG~avSas~lG~PD-~~~lt~--~E-ml~~~r~I~ra~-~iPVIaD~-- 157 (456)
-.|||+|-..--++.++ .|.++|.+=|.-- ..+-| .+.-.+ +- +...++.|.+.. .+-||+|.
T Consensus 50 ~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LFgvp~----~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcL 125 (330)
T COG0113 50 PSMPGVYRYSLDRLVEEAEELVDLGIPAVILFGVPD----DSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCL 125 (330)
T ss_pred CCCCCceeccHHHHHHHHHHHHhcCCCEEEEeCCCc----ccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecc
Confidence 46888887665555543 4777776533221 01111 122222 22 334567777666 47788884
Q ss_pred ----CCCC------C----CHHH---HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHh
Q 012815 158 ----DNGY------G----NAMN---VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (456)
Q Consensus 158 ----DtGY------G----~~~n---v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~ 220 (456)
++|+ + |.+. ..+.+-...+|||+-|-=-| -++| +|.|++++-++
T Consensus 126 ceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeAGAdivAPSd--------MMDG-----------rV~aIR~aLd~ 186 (330)
T COG0113 126 CEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEAGADIVAPSD--------MMDG-----------RVGAIREALDE 186 (330)
T ss_pred cCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHcCCCeecccc--------cccc-----------hHHHHHHHHHH
Confidence 2332 1 2222 22333344567775442211 2333 55555555554
Q ss_pred hC-CCeEEEEecchhh--------------------------cccHHHHHHHHHHhHhcCCCEEEe-ccCCCHHHHHHHH
Q 012815 221 SG-SDIVIVARTDSRQ--------------------------ALSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFC 272 (456)
Q Consensus 221 ~G-~dfvIiARTDA~~--------------------------~~~ldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i~ 272 (456)
.| .+..|++=.--++ ...-+||++.+..=.+-|||+|+| |+++-.+.++++.
T Consensus 187 ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVKPal~YLDIi~~vk 266 (330)
T COG0113 187 AGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVKPALPYLDIIRRVK 266 (330)
T ss_pred cCCCcceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEcCCchHHHHHHHHH
Confidence 44 3566665433221 012689999999999999999999 7889899999999
Q ss_pred HhCCCCceee
Q 012815 273 EISPLVPKMA 282 (456)
Q Consensus 273 ~~v~~vP~~~ 282 (456)
++++ +|+.+
T Consensus 267 ~~~~-lP~~A 275 (330)
T COG0113 267 EEFN-LPVAA 275 (330)
T ss_pred HhcC-CCeEE
Confidence 9988 78754
No 459
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=82.19 E-value=67 Score=33.37 Aligned_cols=158 Identities=9% Similarity=0.040 Sum_probs=79.4
Q ss_pred ceeecccCC--hHHHHHHHHhCCcEEEecchHHhhhhcccCC---------CC--------CCCHHHHHHHHHHHHhccC
Q 012815 90 VHQGPACFD--ALSAKLVEKSGFSFCFTSGFSISAARLALPD---------TG--------FISYGEMVDQGQLITQAVS 150 (456)
Q Consensus 90 ~lv~pgayD--alSArl~e~aGfdAI~vSG~avSas~lG~PD---------~~--------~lt~~Eml~~~r~I~ra~~ 150 (456)
|+.+..-+| +-..+.+.++||-++-+.+...- ...|.|- .+ ....+.++++.+. ...+
T Consensus 58 Pi~lAsG~~~~~~~~~~~~~~G~Gavv~kTvt~~-p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~--~~~~ 134 (335)
T TIGR01036 58 PLGLAAGFDKDGEAIDALGAMGFGFLEIGTVTPK-PQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKR--ARYK 134 (335)
T ss_pred CcEeCCccCCCHHHHHHHHhcCCCEEEeCCcCCC-CCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhh--ccCC
Confidence 444443344 23344555678888877764432 1233321 11 1245566665554 2235
Q ss_pred CcEEEeCCCCC------CCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCcc-ccCHHHHHHHHHHHHHHhHhhC-
Q 012815 151 IPVIGDGDNGY------GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK-VVSREEAVMRIKAAVDARKESG- 222 (456)
Q Consensus 151 iPVIaD~DtGY------G~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~-lvp~ee~v~kI~AA~~Ar~~~G- 222 (456)
.||++-+ .+. +..++..+.++++.+ .|+++-|.=. |-|..+.. ....+...+-+++++++.+.+.
T Consensus 135 ~~i~vsi-~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlS-----cPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~ 207 (335)
T TIGR01036 135 GPIGINI-GKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVS-----SPNTPGLRDLQYKAELRDLLTAVKQEQDGLRR 207 (335)
T ss_pred CcEEEEE-eCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEcc-----CCCCCCcccccCHHHHHHHHHHHHHHHHhhhh
Confidence 6777665 221 134566666666554 4888877543 55544322 3334444444555554443110
Q ss_pred -CCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEe
Q 012815 223 -SDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (456)
Q Consensus 223 -~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifi 259 (456)
...=|..+--... ..++..+-+++..++|||.|.+
T Consensus 208 ~~~~Pv~vKLsP~~--~~~~i~~ia~~~~~~GadGi~l 243 (335)
T TIGR01036 208 VHRVPVLVKIAPDL--TESDLEDIADSLVELGIDGVIA 243 (335)
T ss_pred ccCCceEEEeCCCC--CHHHHHHHHHHHHHhCCcEEEE
Confidence 0123444432211 1234556677788999999875
No 460
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=82.18 E-value=45 Score=36.62 Aligned_cols=153 Identities=15% Similarity=0.236 Sum_probs=86.8
Q ss_pred cCCcEEEeCCCCCCCHHHHHHHHHH-HHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEE
Q 012815 149 VSIPVIGDGDNGYGNAMNVKRTVKG-YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI 227 (456)
Q Consensus 149 ~~iPVIaD~DtGYG~~~nv~rtVk~-l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvI 227 (456)
.++|||+|+--| +......-++. +.+.|+++|.+--= .|. -.+.| +++ . .|.+.+|
T Consensus 87 ~~~~vI~DaKrg--DI~T~~~yA~a~f~~~~aDAiTv~py-----mG~---Dsl~p---fl~-------~---~~kgvfv 143 (477)
T PRK05500 87 PDIPIILDAKHG--DLNTSTIFAKTIFEQWQVDAVTLSPY-----AGQ---DHVAP---FLV-------Y---PDKGVFI 143 (477)
T ss_pred cCCeEEEEeccc--ChHHHHHHHHHHHhhcCCCEEEECCc-----cCc---cchHH---HHh-------c---CCCcEEE
Confidence 479999998877 43111112233 34689999988542 222 12222 221 1 2457899
Q ss_pred EEecchhhccc-----------HHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCH
Q 012815 228 VARTDSRQALS-----------LEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNP 296 (456)
Q Consensus 228 iARTDA~~~~~-----------ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~ 296 (456)
.++|-.-.+.. .++.+++++.+-..+..++++.+. ..++++++.+..|..+.++ .+-| .-.=++
T Consensus 144 L~~tSNpga~~~Q~~~~~g~~ly~~v~~~~~~~~~~~~~g~VvGAT-~p~~~~~iR~~~p~~~iL~---PGiG-AQGg~~ 218 (477)
T PRK05500 144 LCHTSNPGAIALQEYPTPENPFYLQVVKEAKTWGTPEQLGLEVGTT-NPEVLAKIRQIAPERLILL---RSIW-AEKGNL 218 (477)
T ss_pred EEeCCCcCHHHHhhcccCCCcHHHHHHHHHHHhCCCCceEEEECCC-ChHHHHHHHHhCCCCEEEc---cccc-cCCCCH
Confidence 99987643322 346667777665555556666554 4678888888766433321 1101 112367
Q ss_pred HHHHhcCCC------EEeccchH-----HHHHHHHHHHHHHHHH
Q 012815 297 LELEELGFK------LVAYPLSL-----IGVSVRAMQDALTAIK 329 (456)
Q Consensus 297 ~eL~elGv~------~Vs~p~~l-----l~aa~~A~~~~l~~i~ 329 (456)
++..+.|.+ .|..+-.. ...+.+.+++.+.+++
T Consensus 219 ~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~~i~~~~ 262 (477)
T PRK05500 219 NQILTAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLREEINQIR 262 (477)
T ss_pred HHHHHhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888888875 55555553 3445556666665554
No 461
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=82.14 E-value=7.9 Score=36.11 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=51.2
Q ss_pred ecccCChHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHH
Q 012815 93 GPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTV 171 (456)
Q Consensus 93 ~pgayDalSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtV 171 (456)
++++.+...+..+...|++.+.+. +... ...|. ....+.++.+.+..++|+++|. | .. .+++
T Consensus 110 ~~~~~t~~e~~~~~~~~~d~v~~~~~~~~--~~~~~--------~~~~~~i~~~~~~~~~~i~~~G----G-I~--~~~i 172 (202)
T cd04726 110 LIGVEDPEKRAKLLKLGVDIVILHRGIDA--QAAGG--------WWPEDDLKKVKKLLGVKVAVAG----G-IT--PDTL 172 (202)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEEcCcccc--cccCC--------CCCHHHHHHHHhhcCCCEEEEC----C-cC--HHHH
Confidence 499999999988888899987774 2211 11221 1233455555555689999983 3 21 3457
Q ss_pred HHHHHhCccEEEeCC
Q 012815 172 KGYIKAGFAGIILED 186 (456)
Q Consensus 172 k~l~~AGaaGI~IED 186 (456)
+++.++||+++.+--
T Consensus 173 ~~~~~~Gad~vvvGs 187 (202)
T cd04726 173 PEFKKAGADIVIVGR 187 (202)
T ss_pred HHHHhcCCCEEEEee
Confidence 788899999998854
No 462
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.07 E-value=10 Score=38.63 Aligned_cols=62 Identities=23% Similarity=0.419 Sum_probs=43.7
Q ss_pred HHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 245 RSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 245 RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
.++...++|||.|.++. -+.++++++++.++ .|+++-. .||-++ -+..++.+.|+..|+.+.
T Consensus 200 ea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~-~~i~i~A--iGGIt~-~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 200 QVREAVAAGADIIMFDN-RTPDEIREFVKLVP-SAIVTEA--SGGITL-ENLPAYGGTGVDYISLGF 261 (277)
T ss_pred HHHHHHHcCCCEEEECC-CCHHHHHHHHHhcC-CCceEEE--ECCCCH-HHHHHHHHcCCCEEEECh
Confidence 34445679999999975 45689999998765 3444332 234332 356889999999998875
No 463
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=81.92 E-value=67 Score=33.16 Aligned_cols=213 Identities=18% Similarity=0.216 Sum_probs=135.2
Q ss_pred HHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEe
Q 012815 81 LRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (456)
Q Consensus 81 Lr~ll~~~~~lv~pgayDalSArl~----e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD 156 (456)
|....+.+=-+..-|+++-=+.+.+ ++...+.|.-.|-+-+ ...|- ...+...++.++...++||+.=
T Consensus 10 l~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~-~y~gg-------~~~~~~~v~~~a~~~~vPV~lH 81 (286)
T COG0191 10 LDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAA-KYAGG-------ADSLAHMVKALAEKYGVPVALH 81 (286)
T ss_pred HHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHH-HHhch-------HHHHHHHHHHHHHHCCCCEEEE
Confidence 3333334434777788888777765 4557887776544432 22232 5667778888999899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCC----Ce-EEEEec
Q 012815 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DI-VIVART 231 (456)
Q Consensus 157 ~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~----df-vIiART 231 (456)
.|.|- + .+.+++-+++|..-+.|... | .|.||-++.-+-.++-++..|. ++ .+=+-.
T Consensus 82 lDHg~-~----~~~~~~ai~~GFsSvMiDgS-------~------~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~E 143 (286)
T COG0191 82 LDHGA-S----FEDCKQAIRAGFSSVMIDGS-------H------LPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEE 143 (286)
T ss_pred CCCCC-C----HHHHHHHHhcCCceEEecCC-------c------CCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCcc
Confidence 99993 3 55667788899999999443 2 3577777777777766654331 00 111122
Q ss_pred chhhcc----cHHHHHHHHHHhHhc-CCCEEEe-----ccC-----C--CHHHHHHHHHhCCCCceeeeeeccCCCCCCC
Q 012815 232 DSRQAL----SLEESLRRSRAFADA-GADVLFI-----DAL-----A--SKEEMKAFCEISPLVPKMANMLEGGGKTPIL 294 (456)
Q Consensus 232 DA~~~~----~ldeAI~RakAy~eA-GAD~Ifi-----e~~-----~--s~eei~~i~~~v~~vP~~~N~~~~~g~tp~l 294 (456)
|..... .+.+ .+.|+.|.+. |.|++-+ +|+ + +.+.++++.+.++ +|+. +++ |. .+
T Consensus 144 dg~~~~~~~~~~td-p~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~-~PlV---lHG-gS--Gi 215 (286)
T COG0191 144 DGVVLYTDPADLTD-PEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS-LPLV---LHG-GS--GI 215 (286)
T ss_pred CCcccccchhhhCC-HHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC-CCEE---EeC-CC--CC
Confidence 211100 1111 2335555554 5887653 332 2 4678888888776 6743 444 22 46
Q ss_pred CHHHHHh---cCCCEEeccchHHHHHHHHHHHHHHH
Q 012815 295 NPLELEE---LGFKLVAYPLSLIGVSVRAMQDALTA 327 (456)
Q Consensus 295 t~~eL~e---lGv~~Vs~p~~ll~aa~~A~~~~l~~ 327 (456)
+.+|+++ +|+.-|-+..-+..|.+.|+++.+.+
T Consensus 216 p~~eI~~aI~~GV~KvNi~Td~~~A~~~avr~~~~~ 251 (286)
T COG0191 216 PDEEIREAIKLGVAKVNIDTDLQLAFTAAVREYLAE 251 (286)
T ss_pred CHHHHHHHHHhCceEEeeCcHHHHHHHHHHHHHHHh
Confidence 6776664 89999999999999999999988553
No 464
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=81.90 E-value=6.2 Score=37.84 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=54.0
Q ss_pred HHHHHHHHhHhcCCCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccch
Q 012815 241 ESLRRSRAFADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (456)
Q Consensus 241 eAI~RakAy~eAGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ 312 (456)
+.++.++.|.+.||+.+++-.+ .+.+.++++++..+ +|+.+. +|-...-..+++.++|+..|+.+..
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~-~pi~~g----gGI~~~ed~~~~~~~Ga~~vvlgs~ 103 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETG-VPVQVG----GGIRSLEDVEKLLDLGVDRVIIGTA 103 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcC-CCEEEe----CCcCCHHHHHHHHHcCCCEEEEChH
Confidence 4578899999999999887433 23467888888775 676543 3322112346688899999999887
Q ss_pred HHHHHHHHHHHHHHHH
Q 012815 313 LIGVSVRAMQDALTAI 328 (456)
Q Consensus 313 ll~aa~~A~~~~l~~i 328 (456)
++.-. ..+.+..+.+
T Consensus 104 ~l~d~-~~~~~~~~~~ 118 (230)
T TIGR00007 104 AVENP-DLVKELLKEY 118 (230)
T ss_pred HhhCH-HHHHHHHHHh
Confidence 77532 3344444443
No 465
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=81.83 E-value=4.7 Score=40.24 Aligned_cols=115 Identities=11% Similarity=0.084 Sum_probs=71.3
Q ss_pred CeEEEEecchhhcc-c----HHHHHHHHHHhHhcCCCEEEecc-----CCCHHHHHHHHHhCCCCceeeeeeccCCCCCC
Q 012815 224 DIVIVARTDSRQAL-S----LEESLRRSRAFADAGADVLFIDA-----LASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (456)
Q Consensus 224 dfvIiARTDA~~~~-~----ldeAI~RakAy~eAGAD~Ifie~-----~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~ 293 (456)
.+-|||=-...... + -.+..+-|++|+++||++|.+.. ..+.+.++++.+.+. +|++..- --++.
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~-iPvl~kd----fi~~~ 123 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVS-LPVLRKD----FIIDP 123 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcC-CCEEeee----ecCCH
Confidence 46666654432211 1 12346789999999999998833 246788999888876 7877421 12333
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHH
Q 012815 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRIPSPGSMPSFQEI 345 (456)
Q Consensus 294 lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~~g~~~~~~~~~~~~e~ 345 (456)
+-..+..++|...|......+.. ..+++.++..+.-+....-...+.+|+
T Consensus 124 ~qi~~a~~~GAD~VlLi~~~l~~--~~l~~li~~a~~lGl~~lvevh~~~E~ 173 (260)
T PRK00278 124 YQIYEARAAGADAILLIVAALDD--EQLKELLDYAHSLGLDVLVEVHDEEEL 173 (260)
T ss_pred HHHHHHHHcCCCEEEEEeccCCH--HHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 45788999999999998776543 344555554544233332234455665
No 466
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=81.82 E-value=9.4 Score=39.61 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=79.0
Q ss_pred HHHHHHhC--CcEEEec-chHHhhhhcccCCCCCCCHHHHHHHHHHHHhccC-------CcEEEeCCCCCCCHHHHHHHH
Q 012815 102 AKLVEKSG--FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVS-------IPVIGDGDNGYGNAMNVKRTV 171 (456)
Q Consensus 102 Arl~e~aG--fdAI~vS-G~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~-------iPVIaD~DtGYG~~~nv~rtV 171 (456)
++++++++ +|++=+- |.--. -|..+.. ..+.+.+.++.+.+.++ +||++=+.--+. ..++...+
T Consensus 157 ~~~~~~~~~~ad~iElNlScPn~---~~~~~~~--~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~-~~~i~~ia 230 (335)
T TIGR01036 157 AACLRKLGPLADYLVVNVSSPNT---PGLRDLQ--YKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLT-ESDLEDIA 230 (335)
T ss_pred HHHHHHHhhhCCEEEEEccCCCC---CCccccc--CHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCC-HHHHHHHH
Confidence 45566665 6766653 21111 1333322 23444455555555554 999998766543 23677777
Q ss_pred HHHHHhCccEEEeCCCCC-------CC---CccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHH
Q 012815 172 KGYIKAGFAGIILEDQVS-------PK---GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (456)
Q Consensus 172 k~l~~AGaaGI~IEDq~~-------pK---~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~lde 241 (456)
+.++++||+||.+-.... ++ ..|-..|.++.|.. .+.|+.+.++ .+.++-|+|=.--...
T Consensus 231 ~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~a--l~~v~~~~~~---~~~~ipiig~GGI~~~----- 300 (335)
T TIGR01036 231 DSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKS--TEIIRRLYAE---LQGRLPIIGVGGISSA----- 300 (335)
T ss_pred HHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHH--HHHHHHHHHH---hCCCCCEEEECCCCCH-----
Confidence 888899999999866542 11 12444456655553 3344333332 2335666665443322
Q ss_pred HHHHHHHhHhcCCCEEEec
Q 012815 242 SLRRSRAFADAGADVLFID 260 (456)
Q Consensus 242 AI~RakAy~eAGAD~Ifie 260 (456)
+.+..|..||||+|-+-
T Consensus 301 --~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 301 --QDALEKIRAGASLLQIY 317 (335)
T ss_pred --HHHHHHHHcCCcHHHhh
Confidence 44566777999988654
No 467
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=81.81 E-value=14 Score=40.72 Aligned_cols=110 Identities=16% Similarity=0.072 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHhc---cCCc-EEEeCCCCC-CCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHH
Q 012815 133 ISYGEMVDQGQLITQA---VSIP-VIGDGDNGY-GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEA 207 (456)
Q Consensus 133 lt~~Eml~~~r~I~ra---~~iP-VIaD~DtGY-G~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~ 207 (456)
.+.+|.++.+....+. .+.. +.+.+|+++ -+++-+.+.++.++++||..|.|-|.+ |. ..++++
T Consensus 202 ~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTv-----G~------~tP~~v 270 (503)
T PLN03228 202 KTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTV-----GI------NMPHEF 270 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEEecCC-----CC------CCHHHH
Confidence 5788888776665433 2443 778887764 466778999999999999999999986 32 344566
Q ss_pred HHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEE
Q 012815 208 VMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (456)
Q Consensus 208 v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~If 258 (456)
.+.|++.++..... ++..|-..+ -+++--|+.-+.+..+|||+.|=
T Consensus 271 ~~lV~~l~~~~~~~-~~i~I~~H~----HND~GlAvANslaAi~aGa~~Vd 316 (503)
T PLN03228 271 GELVTYVKANTPGI-DDIVFSVHC----HNDLGLATANTIAGICAGARQVE 316 (503)
T ss_pred HHHHHHHHHHhccc-cCceeEecc----cCCcChHHHHHHHHHHhCCCEEE
Confidence 66666665432210 122222111 12233455666667788888764
No 468
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=81.76 E-value=9.2 Score=39.65 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=44.3
Q ss_pred HHHHHhHh------cCCCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEec
Q 012815 244 RRSRAFAD------AGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (456)
Q Consensus 244 ~RakAy~e------AGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~ 309 (456)
+.++.+++ +|||.|+++-. ++.+++++.++.+... .+ ++..|....-+..++++.|+..++.
T Consensus 214 eea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~~-~~---lEaSGGIt~~ni~~yA~tGVD~Is~ 289 (308)
T PLN02716 214 EEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELINGR-FE---TEASGNVTLDTVHKIGQTGVTYISS 289 (308)
T ss_pred HHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCCC-ce---EEEECCCCHHHHHHHHHcCCCEEEe
Confidence 44555667 99999999987 2678899888766531 12 3322322224578999999999998
Q ss_pred cc
Q 012815 310 PL 311 (456)
Q Consensus 310 p~ 311 (456)
+.
T Consensus 290 Ga 291 (308)
T PLN02716 290 GA 291 (308)
T ss_pred Cc
Confidence 76
No 469
>PRK09389 (R)-citramalate synthase; Provisional
Probab=81.75 E-value=14 Score=40.31 Aligned_cols=132 Identities=16% Similarity=0.100 Sum_probs=79.2
Q ss_pred HHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHh---ccCCcEEEeCCCCCC-CHHHHHHHHHHHHHhC
Q 012815 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAG 178 (456)
Q Consensus 103 rl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~r---a~~iPVIaD~DtGYG-~~~nv~rtVk~l~~AG 178 (456)
..+.++|.+.|.+.. .+|-.. .--.-..+.+|.++.+....+ ..+.-|.+++++++- ++.-+.+.++.+.++|
T Consensus 80 ~~a~~~g~~~v~i~~-~~Sd~h--~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G 156 (488)
T PRK09389 80 DAALECDVDSVHLVV-PTSDLH--IEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAG 156 (488)
T ss_pred HHHHhCCcCEEEEEE-ccCHHH--HHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCC
Confidence 344557888766652 111000 001123578888877765543 346788899998865 5677889999999999
Q ss_pred ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 179 aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
+.-|+|-|.+ | ...++++.+.++..++.. +..+=+=.. +++.-|+.-+.+..+|||+.|
T Consensus 157 a~~i~l~DTv-----G------~~~P~~~~~lv~~l~~~~---~v~l~~H~H------ND~GlAvANalaAv~aGa~~V 215 (488)
T PRK09389 157 ADRICFCDTV-----G------ILTPEKTYELFKRLSELV---KGPVSIHCH------NDFGLAVANTLAALAAGADQV 215 (488)
T ss_pred CCEEEEecCC-----C------CcCHHHHHHHHHHHHhhc---CCeEEEEec------CCccHHHHHHHHHHHcCCCEE
Confidence 9999999986 3 334456666666655421 111111111 223345555666667777654
No 470
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=81.52 E-value=16 Score=36.90 Aligned_cols=163 Identities=20% Similarity=0.205 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhCccEEEeCCCC--CCCCccCCCCccccC-HHHHHHHHHHHHHHhHh--hCCCeEEEEecc------
Q 012815 164 AMNVKRTVKGYIKAGFAGIILEDQV--SPKGCGHTRGRKVVS-REEAVMRIKAAVDARKE--SGSDIVIVARTD------ 232 (456)
Q Consensus 164 ~~nv~rtVk~l~~AGaaGI~IEDq~--~pK~CGH~~gk~lvp-~ee~v~kI~AA~~Ar~~--~G~dfvIiARTD------ 232 (456)
++-|.+.=+.|++|||.-|. -... .+.+....+ -.--. .+-...-++-|++|+.+ .+...+|.+---
T Consensus 40 p~~v~~iH~~yl~AGAdiI~-TnTy~a~~~~l~~~g-~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~l 117 (305)
T PF02574_consen 40 PELVRQIHRDYLEAGADIIT-TNTYQASRERLKEYG-LSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAYL 117 (305)
T ss_dssp HHHHHHHHHHHHHHT-SEEE-EC-TT-SHHHHGGGT--GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S---
T ss_pred HHHHHHHHHHHHHCCCCeEE-ecCCcCchhhhhhcC-CcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEcccccccc
Confidence 44566666899999998664 3332 121111111 00011 11122224445555554 122355555432
Q ss_pred ---hhh---ccc----HHHHHHHHHHhHhcCCCEEEeccCCCHHHHHHHHH---hCCCCceeeeee------ccCCCCCC
Q 012815 233 ---SRQ---ALS----LEESLRRSRAFADAGADVLFIDALASKEEMKAFCE---ISPLVPKMANML------EGGGKTPI 293 (456)
Q Consensus 233 ---A~~---~~~----ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~---~v~~vP~~~N~~------~~~g~tp~ 293 (456)
.+. ... .+.-.+|++.+.++|+|.+++|.+++.+|++.+.+ +++..|..+.+. -..|....
T Consensus 118 ~g~~y~~~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~~~~l~~g~~~~ 197 (305)
T PF02574_consen 118 SGSEYPGDYGLSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKDSGRLRDGTSLE 197 (305)
T ss_dssp -----CTTCTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEEEES-TCTTBCT
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhhhccccCCCCHH
Confidence 111 112 23345678999999999999999887666665553 322234432221 11122223
Q ss_pred CCHHHHHhc------CCCEEeccchHHHHHHHHHHHHHHHH
Q 012815 294 LNPLELEEL------GFKLVAYPLSLIGVSVRAMQDALTAI 328 (456)
Q Consensus 294 lt~~eL~el------Gv~~Vs~p~~ll~aa~~A~~~~l~~i 328 (456)
.....+.++ |+.-+-+-....-..+.++.......
T Consensus 198 ~~~~~~~~~~~~~~~~~~~iGvNC~~~~~~~~~l~~~~~~~ 238 (305)
T PF02574_consen 198 DAVQVIDELLRALPPGPDAIGVNCTSPPEIMKALLELMSAT 238 (305)
T ss_dssp TSHHHHHHHHHHHCTT-SEEEEESSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhheEEcCCCCcHHHHhHHHHHHhcc
Confidence 334556655 66666665555555555555554443
No 471
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=81.42 E-value=30 Score=34.33 Aligned_cols=146 Identities=16% Similarity=0.067 Sum_probs=88.1
Q ss_pred HHHHHHHHhCC-Ccee-ecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhc---cCCc
Q 012815 78 AKSLRQILELP-GVHQ-GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQA---VSIP 152 (456)
Q Consensus 78 a~~Lr~ll~~~-~~lv-~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra---~~iP 152 (456)
...++++.+.. -++. --|+.+.-.++.+..+|++.+-+++.. ++|. ++ ++.+++. -.++
T Consensus 63 ~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~-------~~~~------~~---~~~~~~~~~~~~i~ 126 (258)
T PRK01033 63 YELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAA-------LEDP------DL---ITEAAERFGSQSVV 126 (258)
T ss_pred HHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHH-------hcCH------HH---HHHHHHHhCCCcEE
Confidence 45666666543 2433 347888888888888999999887533 2221 22 2223322 2378
Q ss_pred EEEeCCCCC---------C----CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH
Q 012815 153 VIGDGDNGY---------G----NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (456)
Q Consensus 153 VIaD~DtGY---------G----~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~ 219 (456)
+.+|.-.|. | ......+.++++.+.|+..+.+-|-. +.|...|. +. +++.+++ ++
T Consensus 127 vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~---~~G~~~G~---d~-~~i~~~~---~~-- 194 (258)
T PRK01033 127 VSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSID---RDGTMKGY---DL-ELLKSFR---NA-- 194 (258)
T ss_pred EEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccC---CCCCcCCC---CH-HHHHHHH---hh--
Confidence 889987661 1 12346778899999999999998653 44555442 22 3344433 22
Q ss_pred hhCCCeEEEEecchhhcccHHHHHHHHHHhH-hcCCCEEEecc
Q 012815 220 ESGSDIVIVARTDSRQALSLEESLRRSRAFA-DAGADVLFIDA 261 (456)
Q Consensus 220 ~~G~dfvIiARTDA~~~~~ldeAI~RakAy~-eAGAD~Ifie~ 261 (456)
.+.-|+|--+....++ .+.+. +.|||.+.+-.
T Consensus 195 ---~~ipvIasGGv~s~eD-------~~~l~~~~GvdgVivg~ 227 (258)
T PRK01033 195 ---LKIPLIALGGAGSLDD-------IVEAILNLGADAAAAGS 227 (258)
T ss_pred ---CCCCEEEeCCCCCHHH-------HHHHHHHCCCCEEEEcc
Confidence 3566777777655323 33333 57999988743
No 472
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=81.21 E-value=42 Score=36.86 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=81.0
Q ss_pred HHHHHhccCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHH-h
Q 012815 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA-R 218 (456)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtG-YG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~A-r 218 (456)
+|++....+-||+.=+--- -| ++.+..+.+.++...|++=|+ .|.. ...++..|.+|-+..+..+++. .
T Consensus 158 ~R~llgv~~RPLigtiiKP~~GLsp~~~A~~~y~~~~GGvD~IK-DDE~-------l~dq~~~p~~eRv~~~~~a~~~a~ 229 (475)
T CHL00040 158 ERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTK-DDEN-------VNSQPFMRWRDRFLFCAEAIYKAQ 229 (475)
T ss_pred HHHHhCCCCCceEEEecccccCCCHHHHHHHHHHHHcCCCcccc-cCcc-------CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6777777889999876554 35 678888889999989988664 2322 2335566777666665555543 3
Q ss_pred HhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC----CCHHHHHHHHHhCCCCcee
Q 012815 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL----ASKEEMKAFCEISPLVPKM 281 (456)
Q Consensus 219 ~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~----~s~eei~~i~~~v~~vP~~ 281 (456)
++.|...+.-+- ..+...+|.++|++...++|+.++++.-. .....+++.++... +|+.
T Consensus 230 ~eTG~~~~y~~N---iTa~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~al~~l~~~~~~~~-l~Ih 292 (475)
T CHL00040 230 AETGEIKGHYLN---ATAGTCEEMYKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNG-LLLH 292 (475)
T ss_pred HhhCCcceeeec---cCCCCHHHHHHHHHHHHHcCCceEEEeccccccchHHHHHHHhhhcC-ceEE
Confidence 444432221111 11124689999999999999999988643 33445555444543 5554
No 473
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=81.12 E-value=9.2 Score=38.51 Aligned_cols=190 Identities=16% Similarity=0.168 Sum_probs=112.4
Q ss_pred HHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc--CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEE
Q 012815 106 EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGII 183 (456)
Q Consensus 106 e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~--~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~ 183 (456)
.+.|++++++.|.. | ..-.+|.+|..+.++.+++.+ .+|||+=. |. +..++.+.++.+.++||+|+.
T Consensus 31 ~~~Gv~gi~v~Gst------G--E~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv--~~-~t~~~i~~a~~a~~~Gad~v~ 99 (289)
T cd00951 31 LSYGAAALFAAGGT------G--EFFSLTPDEYAQVVRAAVEETAGRVPVLAGA--GY-GTATAIAYAQAAEKAGADGIL 99 (289)
T ss_pred HHcCCCEEEECcCC------c--CcccCCHHHHHHHHHHHHHHhCCCCCEEEec--CC-CHHHHHHHHHHHHHhCCCEEE
Confidence 34799999988632 2 224689999988888887766 49999854 44 677888999999999999998
Q ss_pred eCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHh-cCCCEEEe-cc
Q 012815 184 LEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD-AGADVLFI-DA 261 (456)
Q Consensus 184 IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~e-AGAD~Ifi-e~ 261 (456)
+---.+ + ..+.++..+-.++..++. +-++++--++.... . -|.+.|.. + -. .++.+ ++
T Consensus 100 ~~pP~y-----~-----~~~~~~i~~~f~~v~~~~---~~pi~lYn~~g~~l--~-~~~l~~L~---~~~p-nivgiKds 159 (289)
T cd00951 100 LLPPYL-----T-----EAPQEGLYAHVEAVCKST---DLGVIVYNRANAVL--T-ADSLARLA---ERCP-NLVGFKDG 159 (289)
T ss_pred ECCCCC-----C-----CCCHHHHHHHHHHHHhcC---CCCEEEEeCCCCCC--C-HHHHHHHH---hcCC-CEEEEEeC
Confidence 822211 1 125577777777776654 34677766654321 2 23444432 2 22 34444 44
Q ss_pred CCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 012815 262 LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (456)
Q Consensus 262 ~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~~g~ 332 (456)
..+.+.+.++.+..+. -+.++.+.. +.....-+...+|.+-++-+...+.. ..+.+.++.+++|.
T Consensus 160 ~~d~~~~~~~~~~~~~---~~~v~~G~~-~~d~~~~~~l~~Ga~G~is~~~n~~P--~~~~~l~~~~~~gd 224 (289)
T cd00951 160 VGDIELMRRIVAKLGD---RLLYLGGLP-TAEVFALAYLAMGVPTYSSAVFNFVP--EIALAFYAAVRAGD 224 (289)
T ss_pred CCCHHHHHHHHHhcCC---CeEEEeCCC-cchHhHHHHHHCCCCEEEechhhhhH--HHHHHHHHHHHcCC
Confidence 5566777777766542 233333210 00122345567888887765543322 22334444455554
No 474
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=81.09 E-value=27 Score=35.07 Aligned_cols=175 Identities=21% Similarity=0.285 Sum_probs=103.2
Q ss_pred HHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012815 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (456)
Q Consensus 100 lSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGa 179 (456)
..|+-.++.||+-+.+==+--| .-|.|- ....++.|++.++.||=+ | |+. .-.+.++.+.++|+
T Consensus 35 ~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~--------n~~~i~~i~~~~~~~vQv----G-GGI-Rs~~~v~~ll~~G~ 98 (241)
T COG0106 35 EVAKKWSDQGAEWLHLVDLDGA--KAGGPR--------NLEAIKEILEATDVPVQV----G-GGI-RSLEDVEALLDAGV 98 (241)
T ss_pred HHHHHHHHcCCcEEEEeecccc--ccCCcc--------cHHHHHHHHHhCCCCEEe----e-CCc-CCHHHHHHHHHCCC
Confidence 3556666778887776522211 113333 235678888988888755 3 222 23455678888999
Q ss_pred cEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE---ecchhhcccHH-----HHHHHHHHhHh
Q 012815 180 AGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA---RTDSRQALSLE-----ESLRRSRAFAD 251 (456)
Q Consensus 180 aGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA---RTDA~~~~~ld-----eAI~RakAy~e 251 (456)
+=|.|=-- .+-.++ ++.. + .+..| +=++++ |-...+..++. +.++-++.|.+
T Consensus 99 ~rViiGt~------------av~~p~-~v~~---~---~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~ 158 (241)
T COG0106 99 ARVIIGTA------------AVKNPD-LVKE---L---CEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEE 158 (241)
T ss_pred CEEEEecc------------eecCHH-HHHH---H---HHHcC-CcEEEEEEccCCccccccccccccCCHHHHHHHHHh
Confidence 99988222 122232 2222 2 22233 333332 22111222211 35677888999
Q ss_pred cCCCEEEeccC--------CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhc-CCCEEeccchHHH
Q 012815 252 AGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL-GFKLVAYPLSLIG 315 (456)
Q Consensus 252 AGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~el-Gv~~Vs~p~~ll~ 315 (456)
.|+..+.+..+ ++.+..+++++.+. +|+.+ .||-...=+.+.|+++ |+.-++.|-+++.
T Consensus 159 ~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~~-ipvia----SGGv~s~~Di~~l~~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 159 VGLAHILYTDISRDGTLSGPNVDLVKELAEAVD-IPVIA----SGGVSSLDDIKALKELSGVEGVIVGRALYE 226 (241)
T ss_pred cCCCeEEEEecccccccCCCCHHHHHHHHHHhC-cCEEE----ecCcCCHHHHHHHHhcCCCcEEEEehHHhc
Confidence 99998887543 56788999999986 67653 3454332335667788 8999999887654
No 475
>PRK00915 2-isopropylmalate synthase; Validated
Probab=81.03 E-value=25 Score=38.57 Aligned_cols=151 Identities=23% Similarity=0.196 Sum_probs=90.7
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
|+.+.++|++.|=++..+.+ |+ | .+.+++|.+.. +..+.+=.. .....+.++.+.+.++|+.
T Consensus 32 a~~L~~~Gv~~IE~G~p~~s------~~-------d-~~~v~~i~~~~~~~~i~a~~r---~~~~did~a~~a~~~~~~~ 94 (513)
T PRK00915 32 AKQLERLGVDVIEAGFPASS------PG-------D-FEAVKRIARTVKNSTVCGLAR---AVKKDIDAAAEALKPAEAP 94 (513)
T ss_pred HHHHHHcCCCEEEEcCCCCC------hH-------H-HHHHHHHHhhCCCCEEEEEcc---CCHHHHHHHHHHhhcCCCC
Confidence 45677889998887532211 11 1 12345554433 233443221 1345677777777789999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie 260 (456)
.|++-..+++- |...+-=.+.++..+++..+++-.++.|..+.+.+ -|+. ....+.+++-+++..++|||.|.+.
T Consensus 95 ~v~i~~~~Sd~---h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~-ed~~-r~d~~~l~~~~~~~~~~Ga~~i~l~ 169 (513)
T PRK00915 95 RIHTFIATSPI---HMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSA-EDAT-RTDLDFLCRVVEAAIDAGATTINIP 169 (513)
T ss_pred EEEEEECCcHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe-CCCC-CCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 99998776433 21111124678888888877776666664433222 2332 2356788899999999999999876
Q ss_pred c---CCCHHHHHHHHHh
Q 012815 261 A---LASKEEMKAFCEI 274 (456)
Q Consensus 261 ~---~~s~eei~~i~~~ 274 (456)
- .-.++++.++.+.
T Consensus 170 DTvG~~~P~~~~~~i~~ 186 (513)
T PRK00915 170 DTVGYTTPEEFGELIKT 186 (513)
T ss_pred cCCCCCCHHHHHHHHHH
Confidence 3 3455666555543
No 476
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=81.01 E-value=47 Score=35.98 Aligned_cols=126 Identities=15% Similarity=0.107 Sum_probs=81.2
Q ss_pred HHHHHHhccCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHH-HH
Q 012815 141 QGQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV-DA 217 (456)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtG-YG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~-~A 217 (456)
-+|++....+-|++.-+--- -| ++.+..+.+.++...|++=|| .|.. ...++..|.+|-+..+..++ ++
T Consensus 150 g~R~~lgv~~RPL~gtiiKPklGLsp~~~a~~~y~~~~GGvD~IK-DDE~-------l~~q~f~p~~eRv~~~~~ai~~a 221 (424)
T cd08208 150 GLRERLQAHDRPIFFGVIKPNIGLPPGEFAELGYQSWLGGLDIAK-DDEM-------LADVDWCPLEERAALLGKARRRA 221 (424)
T ss_pred hHHHHhCCCCCCeeeeeecccccCCHHHHHHHHHHHHcCCccccc-cccc-------ccCCCCCCHHHHHHHHHHHHHHH
Confidence 36677777789998876554 35 678889999999999988665 2321 23345667666555544444 33
Q ss_pred hHhhCCC--eEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCC-HHHHHHHHHhCCCCcee
Q 012815 218 RKESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEISPLVPKM 281 (456)
Q Consensus 218 r~~~G~d--fvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~~v~~vP~~ 281 (456)
.++.|.. +.+|.-. +.+|.++|++...++|+.++++.-... ..-++.+++..+ +|+.
T Consensus 222 ~~eTG~~~~ya~NiT~------~~~em~~ra~~a~~~G~~~vmv~~~~~G~~al~~L~~~~~-l~ih 281 (424)
T cd08208 222 EAETGVPKIYLANITD------EVDRLMELHDVAVRNGANALLINAMPVGLSAVRMLRKHAQ-VPLI 281 (424)
T ss_pred HHhhCCcceEEEEccC------CHHHHHHHHHHHHHhCCCEEEEeeecccHHHHHHHHhcCC-CeEE
Confidence 3444422 3333322 358889999999999999999876543 345666666543 4543
No 477
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=81.00 E-value=49 Score=36.32 Aligned_cols=119 Identities=17% Similarity=0.276 Sum_probs=75.9
Q ss_pred HHHHHhccCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHH-HHh
Q 012815 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV-DAR 218 (456)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtG-YG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~-~Ar 218 (456)
+|++....+-||+.=+=-- -| ++++..+.+.++...|++=|+ .|.. ...++..|.++-+..+..++ ++.
T Consensus 151 iR~~lgv~~RPL~gtiiKP~~GLsp~~~a~~~y~~~~GGvD~IK-DDE~-------l~~q~f~p~~~Rv~~~~~a~~~a~ 222 (468)
T PRK04208 151 ERERLDKYGRPLLGTTPKPKLGLSAKNYGRVVYEALRGGLDFTK-DDEN-------LNSQPFNRWRDRFLFVMEAIDKAE 222 (468)
T ss_pred HHHHhCCCCCceEEEeeccccCCCHHHHHHHHHHHHhcCCceee-CCCC-------CCCCCCccHHHHHHHHHHHHHHHH
Confidence 6777777789998766554 35 678899999999999998776 3432 22345666666555544443 333
Q ss_pred HhhCCC--eEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccCCC-HHHHHHHHH
Q 012815 219 KESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCE 273 (456)
Q Consensus 219 ~~~G~d--fvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~ 273 (456)
++.|.. +.+|.-.| ..+|.++|++...++|+.++++..... ..-++.+++
T Consensus 223 ~eTG~~k~y~~NiT~~-----~~~em~~ra~~~~e~G~~~~mv~~~~~G~~~l~~l~~ 275 (468)
T PRK04208 223 AETGERKGHYLNVTAP-----TMEEMYKRAEFAKELGSPIVMIDVVTAGWTALQSLRE 275 (468)
T ss_pred HhhCCcceEEEecCCC-----CHHHHHHHHHHHHHhCCCEEEEeccccccHHHHHHHH
Confidence 444432 23322221 257889999999999999999876432 233444444
No 478
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.94 E-value=36 Score=35.00 Aligned_cols=146 Identities=17% Similarity=0.248 Sum_probs=83.3
Q ss_pred HHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHH------HHHHHHHHhcc-
Q 012815 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEM------VDQGQLITQAV- 149 (456)
Q Consensus 77 ~a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Em------l~~~r~I~ra~- 149 (456)
.++++.+...+++..++-+=-..+..|.+++. |+.++| +.. -.+|+.|.-++--+.+ ...+++..+..
T Consensus 124 ~t~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~---AV~~GG-G~~-HR~gLsd~ilIkdNHi~~~G~i~~ai~~~r~~~~ 198 (289)
T PRK07896 124 ATAAWVDAVAGTKAKIRDTRKTLPGLRALQKY---AVRCGG-GVN-HRMGLGDAALIKDNHVAAAGSVVAALRAVRAAAP 198 (289)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCCcchHHHHH---HHHhCC-Ccc-ccCCCcceeeecHHHHHHhCcHHHHHHHHHHhCC
Confidence 34556666655545555455555666777765 777777 433 3688888766654432 22333333323
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE
Q 012815 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (456)
Q Consensus 150 ~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA 229 (456)
..|+.+-.|+ .+ -+.+..++|++.|.++.- ++++. +.++...+...+...+
T Consensus 199 ~~kIeVEv~t----l~----ea~eal~~gaDiI~LDnm---------------~~e~v----k~av~~~~~~~~~v~i-- 249 (289)
T PRK07896 199 DLPCEVEVDS----LE----QLDEVLAEGAELVLLDNF---------------PVWQT----QEAVQRRDARAPTVLL-- 249 (289)
T ss_pred CCCEEEEcCC----HH----HHHHHHHcCCCEEEeCCC---------------CHHHH----HHHHHHHhccCCCEEE--
Confidence 4778887753 22 334557899999999542 23333 3333322211233332
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCCEEEeccC
Q 012815 230 RTDSRQALSLEESLRRSRAFADAGADVLFIDAL 262 (456)
Q Consensus 230 RTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~ 262 (456)
++.+ ++ .++...+|++.|+|.|.+-++
T Consensus 250 --eaSG--GI--~~~ni~~yA~tGvD~Is~gal 276 (289)
T PRK07896 250 --ESSG--GL--TLDTAAAYAETGVDYLAVGAL 276 (289)
T ss_pred --EEEC--CC--CHHHHHHHHhcCCCEEEeChh
Confidence 3322 22 147788999999999998665
No 479
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=80.94 E-value=16 Score=39.19 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHh---ccCCcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHH
Q 012815 133 ISYGEMVDQGQLITQ---AVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAV 208 (456)
Q Consensus 133 lt~~Eml~~~r~I~r---a~~iPVIaD~DtGYG-~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v 208 (456)
.|.+|.++.+....+ ..++++..++++.+. +++.+.+.++.+.++||.=|+|=|.++ ...+.++.
T Consensus 110 ~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG-----------~~~P~~~~ 178 (409)
T COG0119 110 KTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVG-----------VATPNEVA 178 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcC-----------ccCHHHHH
Confidence 788888887766544 345999999999987 568899999999999999999999872 33456777
Q ss_pred HHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 209 MRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 209 ~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
+.|++.++.-. .+..| ....-+++--|+.=..+-.+|||+.|
T Consensus 179 ~~i~~l~~~v~---~~~~l----~~H~HnD~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 179 DIIEALKANVP---NKVIL----SVHCHNDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred HHHHHHHHhCC---CCCeE----EEEecCCcchHHHHHHHHHHcCCcEE
Confidence 77777765432 00111 11111233345666666777887765
No 480
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=80.91 E-value=44 Score=34.11 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccH
Q 012815 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (456)
Q Consensus 160 GYG~~~nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~l 239 (456)
|.++++.+.+.++++.+.|...+||- +|. ++-+++|++.+++. +++ .=|-|+......
T Consensus 126 ~~~~~~~~~~~~~~~~~~G~~~~KlK-------v~~---------~~d~~~v~avr~~~----~~~--~l~vDaN~~w~~ 183 (321)
T PRK15129 126 VIGTPEQMANSASALWQAGAKLLKVK-------LDN---------HLISERMVAIRSAV----PDA--TLIVDANESWRA 183 (321)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEe-------CCC---------chHHHHHHHHHHhC----CCC--eEEEECCCCCCH
Confidence 45677788888888999999999982 221 11246777777654 243 337799877888
Q ss_pred HHHHHHHHHhHhcCCCEEEeccC
Q 012815 240 EESLRRSRAFADAGADVLFIDAL 262 (456)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~ 262 (456)
++|++.++++.+. +.-|+|-+
T Consensus 184 ~~A~~~~~~l~~~--~i~~iEqP 204 (321)
T PRK15129 184 EGLAARCQLLADL--GVAMLEQP 204 (321)
T ss_pred HHHHHHHHHHHhc--CceEEECC
Confidence 9999999999886 47788875
No 481
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=80.86 E-value=4.2 Score=39.46 Aligned_cols=82 Identities=13% Similarity=0.225 Sum_probs=54.4
Q ss_pred HHHHHHHHhHhcCCCEEEeccCC--------CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccch
Q 012815 241 ESLRRSRAFADAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (456)
Q Consensus 241 eAI~RakAy~eAGAD~Ifie~~~--------s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ 312 (456)
+.++-+++|.++|+|.+++..+. +.+.++++.+.+. +|+.++ +|-...=..+++.+.|+..|+.+..
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~-~pv~~~----GGI~s~~d~~~~l~~G~~~v~ig~~ 102 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVF-IPLTVG----GGIRSLEDARRLLRAGADKVSINSA 102 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCC-CCEEEe----CCCCCHHHHHHHHHcCCceEEECch
Confidence 56788999999999988876542 3467888888876 787654 3432111346667789999999877
Q ss_pred HHHHHHHHHHHHHHHH
Q 012815 313 LIGVSVRAMQDALTAI 328 (456)
Q Consensus 313 ll~aa~~A~~~~l~~i 328 (456)
++.-- .-+.+..+.+
T Consensus 103 ~~~~p-~~~~~i~~~~ 117 (243)
T cd04731 103 AVENP-ELIREIAKRF 117 (243)
T ss_pred hhhCh-HHHHHHHHHc
Confidence 66532 3344444444
No 482
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=80.71 E-value=32 Score=35.88 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC--ccEEEeCCCCCCCCccCCCCccccCHHHHHHHH
Q 012815 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG--FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRI 211 (456)
Q Consensus 134 t~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG--aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI 211 (456)
+.++....++.+.. ..++ +=+=-|+. .+-.+-+..++++| ++-|.+ |-. -||. +.+.+.|
T Consensus 67 ~~E~~~sfvrk~k~-~~L~--v~~SvG~t--~e~~~r~~~lv~a~~~~d~i~~-D~a----hg~s--------~~~~~~i 128 (321)
T TIGR01306 67 DEESRIPFIKDMQE-RGLF--ASISVGVK--ACEYEFVTQLAEEALTPEYITI-DIA----HGHS--------NSVINMI 128 (321)
T ss_pred CHHHHHHHHHhccc-cccE--EEEEcCCC--HHHHHHHHHHHhcCCCCCEEEE-eCc----cCch--------HHHHHHH
Confidence 56665555444422 1243 33333432 33455667788888 688877 543 3664 3455666
Q ss_pred HHHHHHhHhhCCCe-EEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec---------------cCC--CHHHHHHHHH
Q 012815 212 KAAVDARKESGSDI-VIVARTDSRQALSLEESLRRSRAFADAGADVLFID---------------ALA--SKEEMKAFCE 273 (456)
Q Consensus 212 ~AA~~Ar~~~G~df-vIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie---------------~~~--s~eei~~i~~ 273 (456)
+.+++.- +.. +|.+-+.. .+.|+...++|||+|.+. +.+ ...-+.++++
T Consensus 129 ~~i~~~~----p~~~vi~GnV~t---------~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~ 195 (321)
T TIGR01306 129 KHIKTHL----PDSFVIAGNVGT---------PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAK 195 (321)
T ss_pred HHHHHhC----CCCEEEEecCCC---------HHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHH
Confidence 6665543 344 44444642 366888899999999876 122 2334555555
Q ss_pred hCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEecc
Q 012815 274 ISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (456)
Q Consensus 274 ~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p 310 (456)
... +|++.+ +|-....+....-.+|.+.|-.+
T Consensus 196 a~~-~pVIad----GGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 196 AAR-KPIIAD----GGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred hcC-CeEEEE----CCcCcHHHHHHHHHcCCCEEeec
Confidence 554 665543 44333334444445788888776
No 483
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=80.68 E-value=20 Score=35.32 Aligned_cols=122 Identities=23% Similarity=0.305 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHH
Q 012815 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (456)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~R 245 (456)
...+.++.+.+.|...++|- +|.. +.++-+++|++++++. |+++.+ |-|+......++|++.
T Consensus 85 ~~~~~~~~~~~~Gf~~~KiK-------vg~~------~~~~d~~~v~~vr~~~---g~~~~l--~vDaN~~w~~~~A~~~ 146 (263)
T cd03320 85 AALGEAKAAYGGGYRTVKLK-------VGAT------SFEEDLARLRALREAL---PADAKL--RLDANGGWSLEEALAF 146 (263)
T ss_pred HHHHHHHHHHhCCCCEEEEE-------ECCC------ChHHHHHHHHHHHHHc---CCCCeE--EEeCCCCCCHHHHHHH
Confidence 44455777778899999993 2321 2245577888887664 455555 5688777788999999
Q ss_pred HHHhHhcCCCEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcC-CCEEeccc
Q 012815 246 SRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLVAYPL 311 (456)
Q Consensus 246 akAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elG-v~~Vs~p~ 311 (456)
++++.+. +..|+|-+-..+++..+.+....+|+.+.-.. .......++.+.| +..+..=+
T Consensus 147 ~~~l~~~--~i~~iEqP~~~~d~~~~~~l~~~~PIa~dEs~----~~~~~~~~~~~~~~~d~v~~k~ 207 (263)
T cd03320 147 LEALAAG--RIEYIEQPLPPDDLAELRRLAAGVPIALDESL----RRLDDPLALAAAGALGALVLKP 207 (263)
T ss_pred HHhhccc--CCceEECCCChHHHHHHHHhhcCCCeeeCCcc----ccccCHHHHHhcCCCCEEEECc
Confidence 9999886 56699886544444444432222676654211 1113456666665 55555433
No 484
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=80.59 E-value=45 Score=33.56 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=85.7
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
|+.+.++|++.|=++++... .-.|-.. ..+++ .+.+.+..+.-+.+ +- ...+-+++..++|+..
T Consensus 26 ~~~L~~~Gv~~IEvGs~~~~---~~~p~~~--d~~~~---~~~l~~~~~~~~~~-----~~---~~~~dv~~A~~~g~~~ 89 (274)
T cd07938 26 IDALSAAGLRRIEVTSFVSP---KWVPQMA--DAEEV---LAGLPRRPGVRYSA-----LV---PNLRGAERALAAGVDE 89 (274)
T ss_pred HHHHHHcCCCEEEeCCCCCc---ccccccC--CHHHH---HhhcccCCCCEEEE-----EC---CCHHHHHHHHHcCcCE
Confidence 45567789999999875321 1134322 33333 33332211211211 11 0244577888899999
Q ss_pred EEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEE-ecchh-----hcccHHHHHHHHHHhHhcCCC
Q 012815 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA-RTDSR-----QALSLEESLRRSRAFADAGAD 255 (456)
Q Consensus 182 I~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiA-RTDA~-----~~~~ldeAI~RakAy~eAGAD 255 (456)
|+|-...++ .|...+-=.+.++..+++..+++..++.|. .+.+ =+.+. .....+..++-++...++|||
T Consensus 90 i~i~~~~Sd---~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~--~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~ 164 (274)
T cd07938 90 VAVFVSASE---TFSQKNINCSIAESLERFEPVAELAKAAGL--RVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCD 164 (274)
T ss_pred EEEEEecCH---HHHHHHcCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 999877642 122111113457778888777777666553 3321 11111 123567888999999999999
Q ss_pred EEEecc---CCCHHHHHHHHHh
Q 012815 256 VLFIDA---LASKEEMKAFCEI 274 (456)
Q Consensus 256 ~Ifie~---~~s~eei~~i~~~ 274 (456)
.|.+.- .-+++++.++.+.
T Consensus 165 ~i~l~DT~G~~~P~~v~~lv~~ 186 (274)
T cd07938 165 EISLGDTIGVATPAQVRRLLEA 186 (274)
T ss_pred EEEECCCCCccCHHHHHHHHHH
Confidence 998853 3455666655543
No 485
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=80.52 E-value=9.2 Score=40.16 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=65.5
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeC
Q 012815 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (456)
Q Consensus 78 a~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~ 157 (456)
....|+++. ++.++.-.||+.-.+..+.+.|+|.|.+|..--+.+ .|+...+.++ ..+.+++...+|++|
T Consensus 230 ~~~aR~llg-~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~t---Kp~~~~~Gle----~l~~~~~~~~iPv~A-- 299 (347)
T PRK02615 230 LAVARQLLG-PEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPT---KPGKAPAGLE----YLKYAAKEAPIPWFA-- 299 (347)
T ss_pred HHHHHHhcC-CCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCC---CCCCCCCCHH----HHHHHHHhCCCCEEE--
Confidence 344566553 456888899999999988899999999995332222 3443344443 344555667899998
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeCCCCC
Q 012815 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQVS 189 (456)
Q Consensus 158 DtGYG~~~nv~rtVk~l~~AGaaGI~IEDq~~ 189 (456)
.|+.. ..++.++.++|++||-+-...+
T Consensus 300 ---iGGI~--~~ni~~l~~~Ga~gVAvisaI~ 326 (347)
T PRK02615 300 ---IGGID--KSNIPEVLQAGAKRVAVVRAIM 326 (347)
T ss_pred ---ECCCC--HHHHHHHHHcCCcEEEEeHHHh
Confidence 35421 2355677889999999987653
No 486
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=80.47 E-value=4.2 Score=39.95 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=51.0
Q ss_pred HHHHHHHHHhHhcCCCEEEeccCC--------CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccc
Q 012815 240 EESLRRSRAFADAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (456)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~~--------s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~ 311 (456)
.+.++.+++|.++||+-+++..+. +.+.++++.+.+. +|+.++ +|-...-+.+++.+.|+..|+.+.
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~-ipv~~~----GGi~s~~~~~~~l~~Ga~~Viigt 104 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVF-IPLTVG----GGIRSVEDARRLLRAGADKVSINS 104 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCC-CCEEee----CCCCCHHHHHHHHHcCCCEEEECh
Confidence 355788999999999999987653 2457888888775 676643 343222234666779999999997
Q ss_pred hHHHH
Q 012815 312 SLIGV 316 (456)
Q Consensus 312 ~ll~a 316 (456)
.++..
T Consensus 105 ~~l~~ 109 (253)
T PRK02083 105 AAVAN 109 (253)
T ss_pred hHhhC
Confidence 76653
No 487
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=80.47 E-value=9.8 Score=38.21 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=81.5
Q ss_pred eeecccCC-------hHHHHHHHHhCCcEEEec-chHHhhhhcccCCCCCCCHHHHH-HHHHHHHhccCCcEEEeCCCCC
Q 012815 91 HQGPACFD-------ALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMV-DQGQLITQAVSIPVIGDGDNGY 161 (456)
Q Consensus 91 lv~pgayD-------alSArl~e~aGfdAI~vS-G~avSas~lG~PD~~~lt~~Eml-~~~r~I~ra~~iPVIaD~DtGY 161 (456)
+.-.++.+ .-.|+.++ +|+|++=+- |.- .. -|.++.+ ...++. ..++.+...+++||++=+.--+
T Consensus 100 i~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScP--n~-~~~~~~~--~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~ 173 (295)
T PF01180_consen 100 IASINGDSEEEIEDWAELAKRLE-AGADALELNLSCP--NV-PGGRPFG--QDPELVAEIVRAVREAVDIPVFVKLSPNF 173 (295)
T ss_dssp EEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTST--TS-TTSGGGG--GHHHHHHHHHHHHHHHHSSEEEEEE-STS
T ss_pred EEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeecc--CC-CCccccc--cCHHHHHHHHHHHHhccCCCEEEEecCCC
Confidence 34456665 34455555 788887665 211 11 1222211 122333 3445555566899999888776
Q ss_pred CCHHHHHHHHHHHHHhCccEEEeCCC----------CCCC----CccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEE
Q 012815 162 GNAMNVKRTVKGYIKAGFAGIILEDQ----------VSPK----GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI 227 (456)
Q Consensus 162 G~~~nv~rtVk~l~~AGaaGI~IEDq----------~~pK----~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvI 227 (456)
.+....... .++.+.|++||++=.. ..+. ..|-..|..+.|.. .+.|+.+++ ..+.++-|
T Consensus 174 ~~~~~~~~~-~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~a--L~~V~~~~~---~~~~~i~I 247 (295)
T PF01180_consen 174 TDIEPFAIA-AELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIA--LRWVRELRK---ALGQDIPI 247 (295)
T ss_dssp SCHHHHHHH-HHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHH--HHHHHHHHH---HTTTSSEE
T ss_pred CchHHHHHH-HHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHH--HHHHHHHHh---ccccceEE
Confidence 665443333 3444899999983221 1111 12223566666653 444444433 33346888
Q ss_pred EEecchhhcccHHHHHHHHHHhHhcCCCEEEecc
Q 012815 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (456)
Q Consensus 228 iARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~ 261 (456)
+|=.-.... +.+..|..||||+|-+-+
T Consensus 248 ig~GGI~s~-------~da~e~l~aGA~~Vqv~S 274 (295)
T PF01180_consen 248 IGVGGIHSG-------EDAIEFLMAGASAVQVCS 274 (295)
T ss_dssp EEESS--SH-------HHHHHHHHHTESEEEESH
T ss_pred EEeCCcCCH-------HHHHHHHHhCCCHheech
Confidence 887654332 456678899999998754
No 488
>TIGR03586 PseI pseudaminic acid synthase.
Probab=80.46 E-value=43 Score=34.97 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=53.3
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchHHhh-------hhcccC---CCCCCCHHHHHHHHHHHHh
Q 012815 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLALP---DTGFISYGEMVDQGQLITQ 147 (456)
Q Consensus 79 ~~Lr~ll~~~~~lv~pgayDalSArl~e~aGfdAI~vSG~avSa-------s~lG~P---D~~~lt~~Eml~~~r~I~r 147 (456)
+.|.+.-++-+..++-++||.-|+..+++.|.+++-++|.-+.. +..|.| .+|.-|++|+...+..|.+
T Consensus 80 ~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~ 158 (327)
T TIGR03586 80 KELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACRE 158 (327)
T ss_pred HHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 34555566777889999999999999999999999999844321 134666 4677899999988888864
No 489
>PRK08508 biotin synthase; Provisional
Probab=80.46 E-value=53 Score=33.00 Aligned_cols=126 Identities=19% Similarity=0.156 Sum_probs=71.9
Q ss_pred HHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEE
Q 012815 105 VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGII 183 (456)
Q Consensus 105 ~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaGI~ 183 (456)
+.+.|+..+.+...+ .++++ ..++-+++.++.|.+.. ++.+.+ =.|+-+ .+..++|.+||++.++
T Consensus 52 a~~~g~~~~~lv~sg-----~~~~~---~~~e~~~ei~~~ik~~~p~l~i~~--s~G~~~----~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 52 AKANGALGFCLVTSG-----RGLDD---KKLEYVAEAAKAVKKEVPGLHLIA--CNGTAS----VEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHCCCCEEEEEecc-----CCCCc---ccHHHHHHHHHHHHhhCCCcEEEe--cCCCCC----HHHHHHHHHcCCCEEc
Confidence 344587766542111 23444 36777788888887654 455433 246554 5666789999999999
Q ss_pred eCCCCC----CCCcc-CCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 184 LEDQVS----PKGCG-HTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 184 IEDq~~----pK~CG-H~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
+-..+. |+.|. | +.++.++.|+.|+++.-+. .-.+|.+=. +..++.++-+....+.+.|.|
T Consensus 118 ~~lEt~~~~~~~i~~~~-------~~~~~l~~i~~a~~~Gi~v-~sg~I~GlG-----Et~ed~~~~l~~lr~L~~~sv 183 (279)
T PRK08508 118 HNLETSKEFFPKICTTH-------TWEERFQTCENAKEAGLGL-CSGGIFGLG-----ESWEDRISFLKSLASLSPHST 183 (279)
T ss_pred ccccchHHHhcCCCCCC-------CHHHHHHHHHHHHHcCCee-cceeEEecC-----CCHHHHHHHHHHHHcCCCCEE
Confidence 866553 45552 3 2233333444443332111 123444432 345777788888888888854
No 490
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=80.41 E-value=53 Score=34.74 Aligned_cols=139 Identities=22% Similarity=0.327 Sum_probs=77.4
Q ss_pred HHHHHHHHHhCccEEEeCCCCC-----------CCCccCCCCccccCHHH-HHHHHHHHHHHhHhhCCCeEEEEecchh-
Q 012815 168 KRTVKGYIKAGFAGIILEDQVS-----------PKGCGHTRGRKVVSREE-AVMRIKAAVDARKESGSDIVIVARTDSR- 234 (456)
Q Consensus 168 ~rtVk~l~~AGaaGI~IEDq~~-----------pK~CGH~~gk~lvp~ee-~v~kI~AA~~Ar~~~G~dfvIiARTDA~- 234 (456)
.+++++.++||.+||-|-.--. .||+-.-+|. +-..-- ..+-++|++++ .|.+|.|.-|--..
T Consensus 152 ~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGS-lENR~Rf~~EVv~aVr~~---vg~~~~vg~Rls~~d 227 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGS-LENRARFLLEVVDAVREA---VGADFPVGVRLSPDD 227 (363)
T ss_pred HHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCc-HHHHHHHHHHHHHHHHHH---hCCCceEEEEECccc
Confidence 4455777789999999976431 3555433331 111111 12222222222 36788888884432
Q ss_pred --h--cccHHHHHHHHHHhHhcC-CCEEEeccC-C-------CH------HHHHHHHHhCCCCceeeeeeccCCCCCCCC
Q 012815 235 --Q--ALSLEESLRRSRAFADAG-ADVLFIDAL-A-------SK------EEMKAFCEISPLVPKMANMLEGGGKTPILN 295 (456)
Q Consensus 235 --~--~~~ldeAI~RakAy~eAG-AD~Ifie~~-~-------s~------eei~~i~~~v~~vP~~~N~~~~~g~tp~lt 295 (456)
. ...++|+++-++.+.++| .|.|-+-+. . .. ...+++..... +|++.+ +....| -.
T Consensus 228 ~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~-~pvi~~---G~i~~~-~~ 302 (363)
T COG1902 228 FFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVR-IPVIAV---GGINDP-EQ 302 (363)
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcC-CCEEEe---CCCCCH-HH
Confidence 1 346889999999999999 688865331 1 11 22334445444 677654 111222 23
Q ss_pred HHHHHhcC-CCEEeccchHHH
Q 012815 296 PLELEELG-FKLVAYPLSLIG 315 (456)
Q Consensus 296 ~~eL~elG-v~~Vs~p~~ll~ 315 (456)
.++.-+-| +.+|.++-.++.
T Consensus 303 Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 303 AEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred HHHHHHcCCCCEEEechhhhc
Confidence 44544554 888888765544
No 491
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=80.40 E-value=29 Score=34.83 Aligned_cols=169 Identities=18% Similarity=0.129 Sum_probs=98.0
Q ss_pred HHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecch----hhcccHHHHHHHHH
Q 012815 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS----RQALSLEESLRRSR 247 (456)
Q Consensus 172 k~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA----~~~~~ldeAI~Rak 247 (456)
....++||.=|-+=+.. ...-++|. ..-++.|++.. ..++..+-|--. +....++--.+..+
T Consensus 15 ~~A~~~GAdRiELC~~L--------a~GG~TPS---yG~~k~a~~~~---~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~ 80 (241)
T COG3142 15 LAAQAAGADRIELCDAL--------AEGGLTPS---YGVIKEAVELS---KIPVYVMIRPRGGDFVYSDDELEIMLEDIR 80 (241)
T ss_pred HHHHHcCCceeehhhcc--------ccCCCCCC---HHHHHHHHhhc---CCceEEEEecCCCCcccChHHHHHHHHHHH
Confidence 35567898887765543 22224444 44556666543 345666666433 12234556677788
Q ss_pred HhHhcCCCEEEeccCC-----CHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHH
Q 012815 248 AFADAGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQ 322 (456)
Q Consensus 248 Ay~eAGAD~Ifie~~~-----s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll~aa~~A~~ 322 (456)
++.++|++.|++-+++ +.+.++++.+.-.+.++-+-+--.--..|.-..++|-++||.||....+. ..+.....
T Consensus 81 ~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~-~sa~eg~~ 159 (241)
T COG3142 81 LARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGK-ASALEGLD 159 (241)
T ss_pred HHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCc-CchhhhHH
Confidence 9999999999987653 56677777776544444333211101123445799999999999986655 44444444
Q ss_pred HHHHHHH--cCCCCC-CC---CCCCHHHHHHhcCcccHH
Q 012815 323 DALTAIK--GGRIPS-PG---SMPSFQEIKETLGFNTYY 355 (456)
Q Consensus 323 ~~l~~i~--~g~~~~-~~---~~~~~~e~~~lvg~~~~~ 355 (456)
...+-+. .|+..- ++ +.-.+++|....|..++-
T Consensus 160 ~l~~li~~a~gri~Im~GaGV~~~N~~~l~~~tg~~e~H 198 (241)
T COG3142 160 LLKRLIEQAKGRIIIMAGAGVRAENIAELVLLTGVTEVH 198 (241)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCchhhh
Confidence 3333332 255321 22 223567777778877654
No 492
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=80.39 E-value=64 Score=36.27 Aligned_cols=158 Identities=22% Similarity=0.286 Sum_probs=0.0
Q ss_pred HhCCcEEEecchHHhhhhc---ccCCCCCCCHHHHHHHHHHHHhcc-CCcEEEeCCCC-CCC--------HHHHHHH---
Q 012815 107 KSGFSFCFTSGFSISAARL---ALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNG-YGN--------AMNVKRT--- 170 (456)
Q Consensus 107 ~aGfdAI~vSG~avSas~l---G~PD~~~lt~~Eml~~~r~I~ra~-~iPVIaD~DtG-YG~--------~~nv~rt--- 170 (456)
++|.+.|.+.+|+.+...+ |+.+. ..++...+-.+++.+ +.++.+=+.-| ||. .+...+.
T Consensus 54 ~AGAdvi~TnTy~as~~~l~~~g~~~~----~~~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~~~~~~~~~~~~~~~ 129 (612)
T PRK08645 54 EAGADVIQTNTFGANRIKLKRYGLEDK----VKEINRAAVRLAREAAGDDVYVAGTIGPIGGRGPLGDISLEEIRREFRE 129 (612)
T ss_pred HhCCCEEecCcccccHHHHHhcCchHH----HHHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_pred -HHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhC-CCeEEEEecchhh----cccHHHHHH
Q 012815 171 -VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG-SDIVIVARTDSRQ----ALSLEESLR 244 (456)
Q Consensus 171 -Vk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G-~dfvIiARTDA~~----~~~ldeAI~ 244 (456)
++.+.++||+.+-+|-... .+-+++++++.++.+ .++++--..+... ...++++++
T Consensus 130 ~~~~l~~~gvD~l~~ET~~~------------------~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~~~~~~ 191 (612)
T PRK08645 130 QIDALLEEGVDGLLLETFYD------------------LEELLLALEAAREKTDLPIIAQVAFHEDGVTQNGTSLEEALK 191 (612)
T ss_pred HHHHHHhcCCCEEEEEccCC------------------HHHHHHHHHHHHHhCCCcEEEEEEECCCCeeCCCCCHHHHHH
Q ss_pred HHHHhHhcCCCEEEeccCCCHHHHHHHHHhCCC-CceeeeeeccCC
Q 012815 245 RSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGG 289 (456)
Q Consensus 245 RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~-vP~~~N~~~~~g 289 (456)
.+.. .|+++|-+-+....+.+..+.+.+.. +..++-+....|
T Consensus 192 ~~~~---~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vypNaG 234 (612)
T PRK08645 192 ELVA---AGADVVGLNCGLGPYHMLEALERIPIPENAPLSAYPNAG 234 (612)
T ss_pred HHHh---CCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEEECCC
No 493
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=80.36 E-value=22 Score=34.91 Aligned_cols=173 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaaG 181 (456)
|+..++. ++.+++ .-...+..|.+.. +...+.|++.+++||.++ .|..+ .+-++++.++|+++
T Consensus 36 a~~~~~~-~~~l~i--vDldga~~g~~~n--------~~~i~~i~~~~~~pv~~g--GGIrs----~edv~~l~~~G~~~ 98 (228)
T PRK04128 36 ALRFSEY-VDKIHV--VDLDGAFEGKPKN--------LDVVKNIIRETGLKVQVG--GGLRT----YESIKDAYEIGVEN 98 (228)
T ss_pred HHHHHHh-CCEEEE--EECcchhcCCcch--------HHHHHHHHhhCCCCEEEc--CCCCC----HHHHHHHHHCCCCE
Q ss_pred EEeCCCCCCCCccCCCCccccCHHHHHHHHH-------HHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCC
Q 012815 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIK-------AAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGA 254 (456)
Q Consensus 182 I~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~-------AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGA 254 (456)
+.| |+..+ --++++++. ...++++ +-+.+..-.......+.|.+++.+.+ ..+-
T Consensus 99 viv-------------Gtaa~-~~~~l~~~~~~~g~ivvslD~~~----g~v~~~gw~~~~~~~~~~~~~~~~~~-~~~i 159 (228)
T PRK04128 99 VII-------------GTKAF-DLEFLEKVTSEFEGITVSLDVKG----GRIAVKGWLEESSIKVEDAYEMLKNY-VNRF 159 (228)
T ss_pred EEE-------------Cchhc-CHHHHHHHHHHcCCEEEEEEccC----CeEecCCCeEcCCCCHHHHHHHHHHH-hCEE
Q ss_pred CEEEeccCCCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012815 255 DVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (456)
Q Consensus 255 D~Ifie~~~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~ll 314 (456)
=+.=+...-+..-.-++.+.++.+|+.+. ||-...-...+|.++|+.-++.+..++
T Consensus 160 i~t~i~~dGt~~G~d~l~~~~~~~pvias----GGv~~~~Dl~~l~~~g~~gvivg~al~ 215 (228)
T PRK04128 160 IYTSIERDGTLTGIEEIERFWGDEEFIYA----GGVSSAEDVKKLAEIGFSGVIIGKALY 215 (228)
T ss_pred EEEeccchhcccCHHHHHHhcCCCCEEEE----CCCCCHHHHHHHHHCCCCEEEEEhhhh
No 494
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=80.33 E-value=11 Score=36.31 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHH
Q 012815 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~Ra 246 (456)
..+.++.+.+.|+..+|+=|-.... .++ .+....|+.+.+.. +..+.|.+-... .+++
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~-~~~---------~~~~~~i~~i~~~~---~~~l~v~GGi~~---------~~~~ 91 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAF-EGE---------RKNAEAIEKIIEAV---GVPVQLGGGIRS---------AEDA 91 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhh-cCC---------cccHHHHHHHHHHc---CCcEEEcCCcCC---------HHHH
Confidence 4556678889999999998874211 011 12234444443332 234444332221 3567
Q ss_pred HHhHhcCCCEEEecc--CCCHHHHHHHHHhCCCCcee--eee-----eccCC-CCCCCC----HHHHHhcCCCEEeccc
Q 012815 247 RAFADAGADVLFIDA--LASKEEMKAFCEISPLVPKM--ANM-----LEGGG-KTPILN----PLELEELGFKLVAYPL 311 (456)
Q Consensus 247 kAy~eAGAD~Ifie~--~~s~eei~~i~~~v~~vP~~--~N~-----~~~~g-~tp~lt----~~eL~elGv~~Vs~p~ 311 (456)
+.+.++|||.|.+-+ +++.+.+.++.+.++.--++ +.+ ...+. .....+ .+++.++|+..+.+..
T Consensus 92 ~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~ 170 (241)
T PRK13585 92 ASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTN 170 (241)
T ss_pred HHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 788889999998865 45677888888876421111 111 10110 011123 3667789999888744
No 495
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=80.27 E-value=14 Score=39.06 Aligned_cols=112 Identities=14% Similarity=0.223 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCC-CCCC-ccCCCCc-----c----------cc----CHHHHHHHHHHHHHHhHhh
Q 012815 163 NAMNVKRTVKGYIKAGFAGIILEDQV-SPKG-CGHTRGR-----K----------VV----SREEAVMRIKAAVDARKES 221 (456)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~-~pK~-CGH~~gk-----~----------lv----p~ee~v~kI~AA~~Ar~~~ 221 (456)
++..+.+.++++.+.|..++||-=+. ..+. -++..++ + .. +.++.+++|++++++.
T Consensus 127 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~--- 203 (404)
T PRK15072 127 DIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKF--- 203 (404)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhh---
Confidence 45667777888888999999994111 0000 0000000 0 00 1233456777776654
Q ss_pred CCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEeccC---CCHHHHHHHHHhCCCCceee
Q 012815 222 GSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMA 282 (456)
Q Consensus 222 G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~ 282 (456)
|+++.|. .|+.....+++|++.++++.+. +..|+|-+ .+.+.++++.+..+ +|+..
T Consensus 204 G~~~~l~--vDaN~~w~~~~A~~~~~~l~~~--~l~~iEeP~~~~d~~~~~~L~~~~~-iPIa~ 262 (404)
T PRK15072 204 GFDLHLL--HDVHHRLTPIEAARLGKSLEPY--RLFWLEDPTPAENQEAFRLIRQHTT-TPLAV 262 (404)
T ss_pred CCCceEE--EECCCCCCHHHHHHHHHhcccc--CCcEEECCCCccCHHHHHHHHhcCC-CCEEe
Confidence 5565544 5887778899999999999886 56788864 35678888888776 67654
No 496
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=80.25 E-value=28 Score=34.52 Aligned_cols=149 Identities=20% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhccCCcEEEeCCCCCCCHHHHHHHHHHHHHhC---
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG--- 178 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~~iPVIaD~DtGYG~~~nv~rtVk~l~~AG--- 178 (456)
++.+.++|++.|=+++...+-.-. |.+..+......+.+-..++.. .+.++...++|
T Consensus 26 ~~~L~~~Gv~~iEvg~~~~~~~~~-----------~~~~~l~~~~~~~~~~~l~r~~---------~~~v~~a~~~~~~~ 85 (268)
T cd07940 26 ARQLDELGVDVIEAGFPAASPGDF-----------EAVKRIAREVLNAEICGLARAV---------KKDIDAAAEALKPA 85 (268)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHH-----------HHHHHHHHhCCCCEEEEEccCC---------HhhHHHHHHhCCCC
Q ss_pred -ccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEE
Q 012815 179 -FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (456)
Q Consensus 179 -aaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~I 257 (456)
+..|++-+..++. |...+-=.+.++.++++..+++..++.|..+.+..=.... ...+...+.++.+.++|+|.|
T Consensus 86 ~~~~i~i~~~~s~~---~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~G~~~i 160 (268)
T cd07940 86 KVDRIHTFIATSDI---HLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATR--TDLDFLIEVVEAAIEAGATTI 160 (268)
T ss_pred CCCEEEEEecCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCC--CCHHHHHHHHHHHHHcCCCEE
Q ss_pred Eec---cCCCHHHHHHHHHhC
Q 012815 258 FID---ALASKEEMKAFCEIS 275 (456)
Q Consensus 258 fie---~~~s~eei~~i~~~v 275 (456)
.+. |.-.++++.++.+.+
T Consensus 161 ~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 161 NIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred EECCCCCCCCHHHHHHHHHHH
No 497
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=80.18 E-value=12 Score=40.79 Aligned_cols=162 Identities=19% Similarity=0.206 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccH-HHHHHH
Q 012815 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL-EESLRR 245 (456)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~l-deAI~R 245 (456)
+.+..+.|.+.+..-+-+-|.. |+.- -+++..+......-= +. ....+|....++.+. ++..++
T Consensus 167 L~eAl~lM~~~~i~~LPVVD~~-----g~lv--GIIT~~DIl~~~~~~--~~------~~~~g~l~V~aav~~~~~~~~~ 231 (479)
T PRK07807 167 PREAFDLLEAARVKLAPVVDAD-----GRLV--GVLTRTGALRATIYT--PA------VDAAGRLRVAAAVGINGDVAAK 231 (479)
T ss_pred HHHHHHHHHhcCCCEEEEEcCC-----CeEE--EEEEHHHHHHHhhCC--ch------hhhhhccchHhhhccChhHHHH
Confidence 3455566777777776555532 1211 155665554432210 00 011122222222222 567899
Q ss_pred HHHhHhcCCCEEEeccCC-----CHHHHHHHHHhCCCCceee-eeeccCCCCCCCCHHHHHhcCCCEEeccchH------
Q 012815 246 SRAFADAGADVLFIDALA-----SKEEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYPLSL------ 313 (456)
Q Consensus 246 akAy~eAGAD~Ifie~~~-----s~eei~~i~~~v~~vP~~~-N~~~~~g~tp~lt~~eL~elGv~~Vs~p~~l------ 313 (456)
++++.++|+|.|+++.-. -.+.++++.+.+|.+++++ |+.- .-...+|.++|+..|..|...
T Consensus 232 a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t------~~~a~~l~~aGad~v~vgig~gsictt 305 (479)
T PRK07807 232 ARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVT------AEGTRDLVEAGADIVKVGVGPGAMCTT 305 (479)
T ss_pred HHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCC------HHHHHHHHHcCCCEEEECccCCccccc
Confidence 999999999999998642 2456788888888778877 6431 013578999999998854432
Q ss_pred ------HHHHHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhc
Q 012815 314 ------IGVSVRAMQDALTAIKGGRIP--SPGSMPSFQEIKETL 349 (456)
Q Consensus 314 ------l~aa~~A~~~~l~~i~~g~~~--~~~~~~~~~e~~~lv 349 (456)
-...+.|+.+..+..+.-+.+ ..+...+..++..-+
T Consensus 306 ~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al 349 (479)
T PRK07807 306 RMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALAL 349 (479)
T ss_pred ccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHH
Confidence 224556666666654432233 233444555554433
No 498
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=80.16 E-value=8.1 Score=35.88 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=27.8
Q ss_pred CHHHHHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 012815 295 NPLELEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (456)
Q Consensus 295 t~~eL~elGv~~Vs~p~~ll~aa~~A~~~~l~~ 327 (456)
+.++|+++|+.++.-|-+.+..++..|.+.+.+
T Consensus 107 d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 107 DYQELKEMGVDRIFGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred hHHHHHHhCcceeeCCCCCHHHHHHHHHHHHHh
Confidence 457799999999999999998888877777655
No 499
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=80.04 E-value=10 Score=39.68 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=107.2
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
|+.+.++|++.|=++ +|-.. -++ .+.++.|.+.. +.-+++ ++.+ ..+.++...++|+.
T Consensus 29 a~~L~~~Gv~~IEvG----------~p~~~---~~~-~e~i~~i~~~~~~~~i~~-----~~r~--~~~di~~a~~~g~~ 87 (365)
T TIGR02660 29 ARALDEAGVDELEVG----------IPAMG---EEE-RAVIRAIVALGLPARLMA-----WCRA--RDADIEAAARCGVD 87 (365)
T ss_pred HHHHHHcCCCEEEEe----------CCCCC---HHH-HHHHHHHHHcCCCcEEEE-----EcCC--CHHHHHHHHcCCcC
Confidence 456778899988875 33221 111 23455555432 222222 3321 24556778889999
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEEec
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~Ifie 260 (456)
.|+|-..+++- |...+-=.+.++.++++..+++.+++.|..+. ..=.|+ .....+..++-+++..++|||.|.+.
T Consensus 88 ~i~i~~~~Sd~---~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~-~~~ed~-~r~~~~~l~~~~~~~~~~Ga~~i~l~ 162 (365)
T TIGR02660 88 AVHISIPVSDL---QIEAKLRKDRAWVLERLARLVSFARDRGLFVS-VGGEDA-SRADPDFLVELAEVAAEAGADRFRFA 162 (365)
T ss_pred EEEEEEccCHH---HHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE-EeecCC-CCCCHHHHHHHHHHHHHcCcCEEEEc
Confidence 99998765421 22111113568888888877776666553322 222333 23457888888999999999999875
Q ss_pred c---CCCHHHHHHHHHhCC-CCceeeeeeccCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHHHHHHHHHHH
Q 012815 261 A---LASKEEMKAFCEISP-LVPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVRAMQDALTAI 328 (456)
Q Consensus 261 ~---~~s~eei~~i~~~v~-~vP~~~N~~~~~g~tp~lt---~~eL~elGv~~Vs~p~~ll--~aa~~A~~~~l~~i 328 (456)
- .-.++++.++.+.+. .+++++.+ +... +..+. .-.--+.|+++|-.....+ ++.-.++++.+..|
T Consensus 163 DT~G~~~P~~v~~lv~~l~~~~~v~l~~-H~HN-d~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L 237 (365)
T TIGR02660 163 DTVGILDPFSTYELVRALRQAVDLPLEM-HAHN-DLGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVAMAL 237 (365)
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCeEEE-EecC-CCChHHHHHHHHHHhCCCEEEEEeeccccccccCCHHHHHHHH
Confidence 3 345566665554321 11222322 2111 11122 2334467888776443333 33344455555555
No 500
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=79.92 E-value=77 Score=32.64 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=89.6
Q ss_pred HHHHHHhCCcEEEecchHHhhhhcccCCCCCCCHHHHHHHHHHHHhcc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012815 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (456)
Q Consensus 102 Arl~e~aGfdAI~vSG~avSas~lG~PD~~~lt~~Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~nv~rtVk~l~~AGaa 180 (456)
|+.+.+.|++-+.++|.... -++|.+ .+.+++.++.|.+.. ++.|-+=.++..| ..+.++.+.++|.+
T Consensus 100 a~~~~~~GlkevvLTsv~~d----dl~d~g---~~~l~~li~~I~~~~p~i~Ievl~~d~~g----~~e~l~~l~~aG~d 168 (302)
T TIGR00510 100 AETIKDMGLKYVVITSVDRD----DLEDGG---ASHLAECIEAIREKLPNIKIETLVPDFRG----NIAALDILLDAPPD 168 (302)
T ss_pred HHHHHHCCCCEEEEEeecCC----Cccccc---HHHHHHHHHHHHhcCCCCEEEEeCCcccC----CHHHHHHHHHcCch
Confidence 44455567776666653311 134432 344555555555432 2333332222223 23456667777776
Q ss_pred EEEeCCCCCCCCccCCCCccccCHHHHHHHHHHHHHHhH--hhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCCEEE
Q 012815 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK--ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (456)
Q Consensus 181 GI~IEDq~~pK~CGH~~gk~lvp~ee~v~kI~AA~~Ar~--~~G~dfvIiARTDA~~~~~ldeAI~RakAy~eAGAD~If 258 (456)
-++.--++.|..+.|+. +-.+.++..+.|+.++++.. ....+ +|++=. +.-+|.++-.....+.|.|.+.
T Consensus 169 v~~hnlEt~~~l~~~vr--r~~t~e~~Le~l~~ak~~~pgi~~~Tg-iIVGlG-----ETeee~~etl~~Lrelg~d~v~ 240 (302)
T TIGR00510 169 VYNHNLETVERLTPFVR--PGATYRWSLKLLERAKEYLPNLPTKSG-IMVGLG-----ETNEEIKQTLKDLRDHGVTMVT 240 (302)
T ss_pred hhcccccchHHHHHHhC--CCCCHHHHHHHHHHHHHhCCCCeecce-EEEECC-----CCHHHHHHHHHHHHhcCCCEEE
Confidence 44332222233332221 12234555555555544421 01111 223322 2234555556666677888777
Q ss_pred ecc-C-CCHHHHHHHHHhCCCCceeeeeeccCCCCCCCCHHHH-------HhcCCCEEeccchHHHHHHHHHHHHHHHHH
Q 012815 259 IDA-L-ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLEL-------EELGFKLVAYPLSLIGVSVRAMQDALTAIK 329 (456)
Q Consensus 259 ie~-~-~s~eei~~i~~~v~~vP~~~N~~~~~g~tp~lt~~eL-------~elGv~~Vs~p~~ll~aa~~A~~~~l~~i~ 329 (456)
+-. + |+. +.+|+- . .++++++ .++||+.|.-|+ +.|.++.|-+.....+.
T Consensus 241 igqYl~p~~----------~~~~v~--------~--~~~p~~f~~~~~~a~~~gf~~v~~~p-~vrssy~a~~~~~~~~~ 299 (302)
T TIGR00510 241 LGQYLRPSR----------RHLPVK--------R--YVSPEEFDYYRSVALEMGFLHAACGP-FVRSSYHADSLFAAGRL 299 (302)
T ss_pred eecccCCCC----------CCCccc--------c--CCCHHHHHHHHHHHHHcCChheEecc-cchhhhhHHHHHHHHHh
Confidence 643 1 211 112210 1 2233332 458999988766 77888888877766654
Done!