Query 012816
Match_columns 456
No_of_seqs 144 out of 158
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 06:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05278 PEARLI-4: Arabidopsis 100.0 1.4E-62 3.1E-67 478.3 23.1 216 239-454 50-269 (269)
2 KOG1987 Speckle-type POZ prote 99.7 3.7E-17 7.9E-22 156.9 13.0 175 219-410 94-278 (297)
3 PF05266 DUF724: Protein of un 98.0 0.00031 6.7E-09 66.9 16.7 128 311-442 47-181 (190)
4 PF08317 Spc7: Spc7 kinetochor 92.7 5 0.00011 40.9 15.5 53 387-439 211-263 (325)
5 smart00787 Spc7 Spc7 kinetocho 92.5 5.6 0.00012 40.9 15.6 66 386-451 205-270 (312)
6 PRK11637 AmiB activator; Provi 92.2 6.4 0.00014 41.2 16.0 84 356-443 168-256 (428)
7 COG4026 Uncharacterized protei 91.1 1.6 3.5E-05 43.8 9.6 62 387-448 144-205 (290)
8 TIGR02680 conserved hypothetic 89.5 6.5 0.00014 47.4 14.6 51 329-379 215-265 (1353)
9 PRK11637 AmiB activator; Provi 89.1 12 0.00026 39.2 14.7 15 307-321 19-33 (428)
10 PF07889 DUF1664: Protein of u 88.9 5.1 0.00011 36.6 10.3 37 412-448 88-124 (126)
11 PHA02562 46 endonuclease subun 87.2 14 0.00031 39.1 14.0 40 391-430 350-389 (562)
12 PF10186 Atg14: UV radiation r 87.0 12 0.00027 35.9 12.4 12 354-365 37-48 (302)
13 cd04776 HTH_GnyR Helix-Turn-He 86.9 8.9 0.00019 33.7 10.4 31 329-360 35-65 (118)
14 PF10168 Nup88: Nuclear pore c 86.5 8.2 0.00018 43.9 12.3 128 279-410 501-639 (717)
15 TIGR02169 SMC_prok_A chromosom 85.7 32 0.00069 39.4 16.5 48 272-322 110-168 (1164)
16 PRK04863 mukB cell division pr 85.7 29 0.00062 42.9 16.9 155 277-443 249-413 (1486)
17 PHA02562 46 endonuclease subun 85.6 13 0.00027 39.6 12.6 95 348-444 178-279 (562)
18 PF10168 Nup88: Nuclear pore c 85.3 8.8 0.00019 43.7 11.9 59 381-439 561-619 (717)
19 PRK13182 racA polar chromosome 85.3 8.1 0.00017 36.8 9.9 134 295-435 4-147 (175)
20 PF09728 Taxilin: Myosin-like 84.7 10 0.00022 38.9 11.0 78 371-448 223-300 (309)
21 PRK02224 chromosome segregatio 84.5 15 0.00032 41.5 13.1 33 286-319 129-161 (880)
22 PF09738 DUF2051: Double stran 84.4 14 0.00031 38.1 11.9 54 357-410 83-137 (302)
23 PF00261 Tropomyosin: Tropomyo 84.3 27 0.00058 34.1 13.2 11 351-361 120-130 (237)
24 TIGR02168 SMC_prok_B chromosom 84.1 51 0.0011 37.5 17.1 21 272-295 112-132 (1179)
25 COG4026 Uncharacterized protei 83.9 15 0.00033 37.2 11.4 12 308-319 74-85 (290)
26 PF02403 Seryl_tRNA_N: Seryl-t 83.8 20 0.00042 30.5 10.8 25 412-436 73-97 (108)
27 PRK01156 chromosome segregatio 83.7 20 0.00044 40.7 13.9 23 342-364 320-342 (895)
28 PRK02224 chromosome segregatio 83.6 27 0.00059 39.5 14.7 11 356-366 494-504 (880)
29 KOG2391 Vacuolar sorting prote 83.5 7.6 0.00016 41.0 9.5 57 386-445 222-278 (365)
30 PF08317 Spc7: Spc7 kinetochor 83.2 44 0.00094 34.2 14.8 47 387-433 218-264 (325)
31 PF04740 LXG: LXG domain of WX 82.7 41 0.00089 31.3 13.5 54 305-360 48-104 (204)
32 COG1579 Zn-ribbon protein, pos 82.6 37 0.00079 34.2 13.6 16 416-431 127-142 (239)
33 PF04156 IncA: IncA protein; 82.3 42 0.0009 31.0 15.9 56 386-441 131-186 (191)
34 PF10186 Atg14: UV radiation r 81.8 27 0.00058 33.7 12.1 19 346-364 65-83 (302)
35 PF07888 CALCOCO1: Calcium bin 81.7 17 0.00038 40.4 11.9 22 413-434 213-234 (546)
36 COG3937 Uncharacterized conser 81.6 11 0.00023 34.0 8.5 38 392-429 68-106 (108)
37 PF05600 DUF773: Protein of un 81.6 24 0.00051 38.7 12.9 31 301-332 345-375 (507)
38 PF00261 Tropomyosin: Tropomyo 80.9 27 0.00058 34.1 11.8 7 356-362 97-103 (237)
39 COG1196 Smc Chromosome segrega 80.8 38 0.00082 40.3 15.1 102 272-383 112-225 (1163)
40 PF15112 DUF4559: Domain of un 79.9 73 0.0016 33.4 15.0 150 283-445 138-306 (307)
41 KOG0995 Centromere-associated 79.7 73 0.0016 35.9 15.8 68 379-446 288-358 (581)
42 smart00787 Spc7 Spc7 kinetocho 79.7 70 0.0015 33.1 14.9 48 387-434 213-260 (312)
43 PRK09343 prefoldin subunit bet 79.6 30 0.00065 30.8 10.8 43 405-447 70-112 (121)
44 KOG4657 Uncharacterized conser 79.6 31 0.00067 34.9 11.8 34 403-436 90-123 (246)
45 KOG0250 DNA repair protein RAD 79.2 22 0.00047 42.4 12.2 53 388-440 404-456 (1074)
46 PRK14148 heat shock protein Gr 78.9 3.8 8.2E-05 39.8 5.2 56 401-456 42-97 (195)
47 PRK05431 seryl-tRNA synthetase 78.8 17 0.00037 38.7 10.5 41 409-449 69-109 (425)
48 PF12718 Tropomyosin_1: Tropom 78.2 56 0.0012 30.1 12.4 30 414-443 109-138 (143)
49 TIGR01843 type_I_hlyD type I s 78.1 47 0.001 33.5 12.9 40 416-455 242-281 (423)
50 smart00502 BBC B-Box C-termina 77.7 40 0.00086 28.0 12.2 33 413-445 72-104 (127)
51 PF10473 CENP-F_leu_zip: Leuci 77.6 61 0.0013 30.2 13.9 33 381-413 48-80 (140)
52 TIGR03185 DNA_S_dndD DNA sulfu 77.6 51 0.0011 36.6 14.1 24 336-363 171-194 (650)
53 COG2178 Predicted RNA-binding 76.9 16 0.00034 36.1 8.8 67 282-348 57-149 (204)
54 KOG0964 Structural maintenance 76.8 16 0.00035 43.3 10.1 31 353-383 193-223 (1200)
55 KOG1962 B-cell receptor-associ 76.6 41 0.00089 33.5 11.6 74 360-433 133-206 (216)
56 TIGR02168 SMC_prok_B chromosom 76.1 71 0.0015 36.4 14.9 11 352-362 825-835 (1179)
57 COG1579 Zn-ribbon protein, pos 75.9 36 0.00077 34.3 11.2 51 398-448 88-138 (239)
58 COG4942 Membrane-bound metallo 75.3 19 0.00042 38.8 9.7 51 389-439 49-99 (420)
59 PF07889 DUF1664: Protein of u 74.8 39 0.00086 30.9 10.3 75 358-441 50-124 (126)
60 PF02994 Transposase_22: L1 tr 74.4 4.5 9.7E-05 42.3 4.7 42 407-448 145-186 (370)
61 PF09726 Macoilin: Transmembra 74.0 1E+02 0.0023 35.3 15.5 95 346-443 462-575 (697)
62 KOG0962 DNA repair protein RAD 73.4 37 0.00079 41.4 12.1 19 356-374 170-188 (1294)
63 KOG0994 Extracellular matrix g 73.4 85 0.0018 38.5 14.7 101 330-430 1535-1636(1758)
64 PF00038 Filament: Intermediat 72.7 64 0.0014 31.9 12.1 42 374-415 71-112 (312)
65 TIGR00634 recN DNA repair prot 72.7 35 0.00076 37.3 11.1 92 272-367 109-205 (563)
66 KOG0250 DNA repair protein RAD 72.6 1.2E+02 0.0026 36.7 15.7 24 354-377 238-261 (1074)
67 PRK04778 septation ring format 72.2 1.4E+02 0.003 32.9 15.6 52 311-368 212-266 (569)
68 TIGR00606 rad50 rad50. This fa 72.0 1.3E+02 0.0028 36.5 16.4 140 288-443 152-292 (1311)
69 PF04111 APG6: Autophagy prote 71.5 21 0.00046 36.6 8.7 36 417-452 103-138 (314)
70 PRK10869 recombination and rep 71.3 84 0.0018 34.6 13.7 19 353-371 298-316 (553)
71 PF06008 Laminin_I: Laminin Do 71.2 1.1E+02 0.0024 30.1 14.8 13 329-341 118-130 (264)
72 KOG0996 Structural maintenance 71.2 1.2E+02 0.0027 37.0 15.5 28 274-301 791-818 (1293)
73 KOG3433 Protein involved in me 70.7 48 0.001 32.7 10.3 64 386-449 78-145 (203)
74 PRK00286 xseA exodeoxyribonucl 70.6 74 0.0016 33.5 12.6 12 296-307 241-252 (438)
75 PRK14161 heat shock protein Gr 70.1 9 0.00019 36.6 5.3 52 405-456 25-76 (178)
76 KOG0979 Structural maintenance 69.9 1.1E+02 0.0024 36.8 14.6 56 308-369 199-259 (1072)
77 PF10146 zf-C4H2: Zinc finger- 69.8 51 0.0011 32.8 10.6 19 351-369 8-26 (230)
78 PF13851 GAS: Growth-arrest sp 69.8 1.1E+02 0.0024 29.6 14.6 14 306-319 12-25 (201)
79 PRK03598 putative efflux pump 69.7 16 0.00035 36.5 7.3 40 277-316 44-87 (331)
80 PF12777 MT: Microtubule-bindi 69.7 21 0.00047 36.6 8.3 41 411-451 268-315 (344)
81 PF11559 ADIP: Afadin- and alp 69.6 86 0.0019 28.3 14.0 18 307-324 31-48 (151)
82 PF05266 DUF724: Protein of un 69.6 1.1E+02 0.0024 29.6 14.7 17 387-403 129-145 (190)
83 TIGR03185 DNA_S_dndD DNA sulfu 69.0 54 0.0012 36.4 11.7 27 402-428 431-457 (650)
84 TIGR00414 serS seryl-tRNA synt 69.0 49 0.0011 35.2 11.0 43 408-450 71-113 (418)
85 COG0419 SbcC ATPase involved i 68.8 90 0.002 36.1 13.8 89 347-439 522-619 (908)
86 COG3883 Uncharacterized protei 68.7 1.4E+02 0.0031 30.6 13.6 89 332-432 128-216 (265)
87 PRK11519 tyrosine kinase; Prov 68.3 1.5E+02 0.0033 33.5 15.2 54 297-367 230-283 (719)
88 PF10267 Tmemb_cc2: Predicted 68.2 59 0.0013 35.0 11.3 109 329-447 207-318 (395)
89 PRK10884 SH3 domain-containing 68.1 47 0.001 32.5 9.8 9 352-360 76-84 (206)
90 KOG2398 Predicted proline-seri 67.8 52 0.0011 37.2 11.3 40 392-431 149-189 (611)
91 PRK14160 heat shock protein Gr 67.6 24 0.00051 34.9 7.7 54 403-456 65-118 (211)
92 PF10046 BLOC1_2: Biogenesis o 67.4 81 0.0018 27.1 12.1 59 387-445 40-98 (99)
93 PLN02320 seryl-tRNA synthetase 67.4 44 0.00094 36.9 10.4 40 411-450 135-174 (502)
94 TIGR02449 conserved hypothetic 67.4 53 0.0012 27.1 8.5 37 391-427 27-63 (65)
95 PF05278 PEARLI-4: Arabidopsis 67.3 1.6E+02 0.0034 30.4 15.1 58 385-442 207-264 (269)
96 KOG0963 Transcription factor/C 67.1 64 0.0014 36.6 11.7 105 339-446 237-343 (629)
97 PF12718 Tropomyosin_1: Tropom 67.0 1.1E+02 0.0023 28.3 11.6 27 414-440 102-128 (143)
98 PF14257 DUF4349: Domain of un 67.0 28 0.0006 34.1 8.1 32 397-428 160-191 (262)
99 PRK14140 heat shock protein Gr 66.9 11 0.00023 36.6 5.2 58 399-456 37-94 (191)
100 PF04111 APG6: Autophagy prote 66.7 1.2E+02 0.0025 31.4 12.8 6 318-323 9-14 (314)
101 PRK04778 septation ring format 66.5 1.2E+02 0.0025 33.5 13.5 10 331-340 342-351 (569)
102 KOG1029 Endocytic adaptor prot 66.2 52 0.0011 38.6 10.9 24 101-125 109-132 (1118)
103 PRK14154 heat shock protein Gr 66.2 13 0.00028 36.7 5.6 50 407-456 60-109 (208)
104 PF11932 DUF3450: Protein of u 66.1 1.3E+02 0.0029 29.3 12.6 61 386-446 57-117 (251)
105 KOG0996 Structural maintenance 65.6 66 0.0014 39.1 11.9 49 392-440 528-576 (1293)
106 PLN02678 seryl-tRNA synthetase 65.3 70 0.0015 34.8 11.3 37 410-446 75-111 (448)
107 KOG0804 Cytoplasmic Zn-finger 65.2 1.7E+02 0.0036 32.5 14.0 15 66-80 77-91 (493)
108 TIGR00606 rad50 rad50. This fa 65.1 57 0.0012 39.4 11.7 37 333-369 168-204 (1311)
109 KOG0977 Nuclear envelope prote 64.9 1.2E+02 0.0026 34.0 13.2 53 390-442 139-191 (546)
110 PF10037 MRP-S27: Mitochondria 64.8 1.2E+02 0.0026 32.9 13.0 122 308-432 257-391 (429)
111 PF05615 THOC7: Tho complex su 64.4 1.1E+02 0.0023 27.4 11.3 49 311-361 20-68 (139)
112 PF13851 GAS: Growth-arrest sp 64.4 82 0.0018 30.5 10.6 16 336-351 11-26 (201)
113 PF09731 Mitofilin: Mitochondr 64.3 1.9E+02 0.0042 31.5 14.6 35 272-306 210-244 (582)
114 PRK14143 heat shock protein Gr 64.1 13 0.00029 37.0 5.4 44 413-456 81-124 (238)
115 KOG4674 Uncharacterized conser 64.0 1.1E+02 0.0024 38.8 13.8 116 302-421 1173-1300(1822)
116 PF10212 TTKRSYEDQ: Predicted 63.5 1.8E+02 0.004 32.5 14.1 103 306-440 412-514 (518)
117 PF09726 Macoilin: Transmembra 63.0 83 0.0018 36.1 11.9 18 354-371 491-508 (697)
118 PF03148 Tektin: Tektin family 62.9 2.1E+02 0.0045 30.2 14.2 92 286-382 201-293 (384)
119 KOG0977 Nuclear envelope prote 61.6 55 0.0012 36.7 9.9 44 401-444 129-172 (546)
120 COG1382 GimC Prefoldin, chaper 61.6 1.3E+02 0.0028 27.6 10.6 42 405-446 69-110 (119)
121 COG4477 EzrA Negative regulato 61.6 2.6E+02 0.0057 31.6 14.9 53 310-367 210-264 (570)
122 KOG3427 Polyglutamine tract-bi 61.4 3.4 7.3E-05 40.8 0.7 29 7-35 77-105 (222)
123 KOG3564 GTPase-activating prot 61.2 55 0.0012 36.5 9.6 77 367-443 31-107 (604)
124 KOG0933 Structural maintenance 60.9 1.6E+02 0.0034 35.7 13.7 27 334-360 691-717 (1174)
125 cd07619 BAR_Rich2 The Bin/Amph 60.6 1.8E+02 0.0039 29.5 12.5 36 327-362 111-146 (248)
126 TIGR00237 xseA exodeoxyribonuc 60.5 1.3E+02 0.0029 32.1 12.3 38 346-383 279-316 (432)
127 KOG0971 Microtubule-associated 60.5 45 0.00097 39.7 9.2 11 72-82 55-65 (1243)
128 PRK12704 phosphodiesterase; Pr 60.1 1.4E+02 0.0029 33.1 12.5 16 394-409 98-113 (520)
129 PRK00106 hypothetical protein; 59.8 1.1E+02 0.0025 34.0 11.9 52 394-448 113-164 (535)
130 PF15290 Syntaphilin: Golgi-lo 59.4 67 0.0014 33.5 9.4 28 399-426 117-144 (305)
131 PF09730 BicD: Microtubule-ass 59.3 2.2E+02 0.0047 33.1 14.3 38 316-358 284-321 (717)
132 KOG0976 Rho/Rac1-interacting s 59.2 2.5E+02 0.0055 33.5 14.6 22 407-428 387-408 (1265)
133 PRK14127 cell division protein 59.1 81 0.0018 28.3 8.8 39 387-425 32-70 (109)
134 TIGR02449 conserved hypothetic 59.0 57 0.0012 26.9 7.2 51 393-446 4-54 (65)
135 PRK14139 heat shock protein Gr 58.9 20 0.00044 34.6 5.4 42 414-455 47-88 (185)
136 PF14942 Muted: Organelle biog 58.8 1.6E+02 0.0034 27.5 13.8 40 389-428 104-144 (145)
137 PF08614 ATG16: Autophagy prot 58.7 1.6E+02 0.0035 27.9 11.3 52 387-438 132-183 (194)
138 PF03915 AIP3: Actin interacti 58.6 1.6E+02 0.0035 32.0 12.5 20 419-438 298-317 (424)
139 PRK14158 heat shock protein Gr 58.3 21 0.00046 34.7 5.5 49 408-456 49-97 (194)
140 PRK14153 heat shock protein Gr 58.3 17 0.00037 35.4 4.8 50 407-456 41-90 (194)
141 PF15233 SYCE1: Synaptonemal c 57.9 1.7E+02 0.0036 27.5 12.4 93 313-410 8-110 (134)
142 KOG4466 Component of histone d 57.7 88 0.0019 32.5 9.9 46 337-382 26-75 (291)
143 KOG4403 Cell surface glycoprot 57.4 2.8E+02 0.0062 30.9 14.0 38 329-366 237-274 (575)
144 PRK14155 heat shock protein Gr 56.9 15 0.00033 36.0 4.3 43 414-456 28-70 (208)
145 PRK10361 DNA recombination pro 56.8 1.9E+02 0.0041 32.0 12.8 11 436-446 142-152 (475)
146 TIGR02051 MerR Hg(II)-responsi 56.8 1E+02 0.0022 27.2 9.1 55 296-354 4-60 (124)
147 cd04769 HTH_MerR2 Helix-Turn-H 56.5 56 0.0012 28.3 7.3 72 329-411 36-108 (116)
148 PRK14144 heat shock protein Gr 56.3 14 0.0003 36.2 3.9 52 405-456 51-102 (199)
149 KOG4438 Centromere-associated 56.1 1.6E+02 0.0034 32.4 11.8 71 373-443 154-239 (446)
150 PF07106 TBPIP: Tat binding pr 56.1 65 0.0014 29.6 8.1 24 417-440 113-136 (169)
151 cd00632 Prefoldin_beta Prefold 55.8 1.3E+02 0.0029 25.7 10.8 35 411-445 68-102 (105)
152 KOG0933 Structural maintenance 55.7 4E+02 0.0087 32.5 15.7 25 408-432 845-869 (1174)
153 PF10805 DUF2730: Protein of u 55.7 85 0.0018 27.4 8.3 45 382-426 46-92 (106)
154 PF10234 Cluap1: Clusterin-ass 55.7 1.7E+02 0.0037 30.1 11.5 34 334-367 117-150 (267)
155 PF07544 Med9: RNA polymerase 55.6 49 0.0011 27.8 6.5 28 415-442 54-81 (83)
156 PRK10884 SH3 domain-containing 55.5 99 0.0022 30.3 9.6 13 352-364 94-106 (206)
157 PHA03158 hypothetical protein; 55.5 1.1E+02 0.0025 30.6 9.9 52 272-327 202-253 (273)
158 COG3883 Uncharacterized protei 55.4 2.5E+02 0.0055 28.9 13.2 35 392-426 73-111 (265)
159 PF05911 DUF869: Plant protein 55.4 1.4E+02 0.003 34.9 12.0 101 336-436 9-115 (769)
160 KOG3427 Polyglutamine tract-bi 55.4 4.5 9.7E-05 40.0 0.4 30 59-88 74-103 (222)
161 PF14193 DUF4315: Domain of un 55.3 39 0.00084 29.0 5.9 23 405-427 7-29 (83)
162 TIGR00414 serS seryl-tRNA synt 55.2 1.2E+02 0.0027 32.2 11.0 15 414-428 84-98 (418)
163 COG1775 HgdB Benzoyl-CoA reduc 55.0 66 0.0014 34.5 8.8 55 304-358 133-187 (379)
164 KOG3876 Arfaptin and related p 55.0 1.2E+02 0.0025 31.8 10.2 122 293-428 175-305 (341)
165 PRK14162 heat shock protein Gr 54.9 26 0.00057 34.1 5.5 49 408-456 48-96 (194)
166 cd07618 BAR_Rich1 The Bin/Amph 54.7 1.6E+02 0.0036 29.7 11.1 37 326-362 110-146 (246)
167 PF10458 Val_tRNA-synt_C: Valy 54.6 51 0.0011 26.3 6.2 50 391-440 10-66 (66)
168 PF12329 TMF_DNA_bd: TATA elem 54.4 1.2E+02 0.0027 25.0 8.7 21 414-434 48-68 (74)
169 TIGR02977 phageshock_pspA phag 54.3 2.1E+02 0.0045 27.7 11.5 36 335-373 39-74 (219)
170 PF07106 TBPIP: Tat binding pr 54.3 52 0.0011 30.3 7.1 22 406-427 116-137 (169)
171 PF09278 MerR-DNA-bind: MerR, 54.3 97 0.0021 23.7 8.2 60 340-409 4-63 (65)
172 PRK14151 heat shock protein Gr 54.2 22 0.00049 33.9 4.8 38 418-455 39-76 (176)
173 KOG2264 Exostosin EXT1L [Signa 53.9 74 0.0016 36.3 9.3 17 305-321 24-40 (907)
174 PF07200 Mod_r: Modifier of ru 53.7 1.7E+02 0.0036 26.3 10.8 61 386-446 56-129 (150)
175 KOG4552 Vitamin-D-receptor int 53.5 2.6E+02 0.0056 28.4 12.5 51 354-411 50-100 (272)
176 PF03310 Cauli_DNA-bind: Cauli 53.5 35 0.00076 31.3 5.7 8 360-367 5-12 (121)
177 PF10243 MIP-T3: Microtubule-b 53.5 4.4 9.5E-05 44.0 0.0 124 280-429 390-532 (539)
178 cd01109 HTH_YyaN Helix-Turn-He 53.2 91 0.002 26.8 8.0 56 295-354 4-61 (113)
179 KOG0018 Structural maintenance 53.2 1.4E+02 0.0029 36.3 11.6 56 387-442 699-754 (1141)
180 PRK09841 cryptic autophosphory 53.1 65 0.0014 36.4 9.0 15 353-367 269-283 (726)
181 COG2433 Uncharacterized conser 52.3 1.7E+02 0.0036 33.6 11.7 23 230-254 260-282 (652)
182 KOG0995 Centromere-associated 52.1 2.2E+02 0.0048 32.3 12.5 52 392-446 332-383 (581)
183 PRK14163 heat shock protein Gr 52.1 28 0.00061 34.5 5.2 44 413-456 54-97 (214)
184 PLN02939 transferase, transfer 51.9 1.9E+02 0.0041 34.8 12.6 32 336-367 155-186 (977)
185 PF10473 CENP-F_leu_zip: Leuci 51.9 2.1E+02 0.0045 26.8 11.2 11 416-426 90-100 (140)
186 cd04786 HTH_MerR-like_sg7 Heli 51.8 1.2E+02 0.0027 27.2 9.0 28 329-357 37-64 (131)
187 PF04012 PspA_IM30: PspA/IM30 51.7 2.2E+02 0.0048 27.1 11.5 20 411-430 117-136 (221)
188 COG2433 Uncharacterized conser 51.7 1.7E+02 0.0036 33.6 11.6 12 15-27 109-120 (652)
189 TIGR03319 YmdA_YtgF conserved 51.5 2.3E+02 0.0049 31.3 12.5 10 398-407 96-105 (514)
190 TIGR02338 gimC_beta prefoldin, 51.3 1.6E+02 0.0035 25.5 10.5 42 405-446 66-107 (110)
191 KOG0964 Structural maintenance 51.2 1.5E+02 0.0033 35.8 11.5 73 354-426 661-733 (1200)
192 PF15290 Syntaphilin: Golgi-lo 51.2 89 0.0019 32.6 8.7 20 422-441 119-138 (305)
193 PF02403 Seryl_tRNA_N: Seryl-t 51.1 1.5E+02 0.0033 25.1 10.7 31 415-445 69-99 (108)
194 PF12240 Angiomotin_C: Angiomo 50.9 1.6E+02 0.0034 29.4 10.0 55 392-447 31-97 (205)
195 cd04777 HTH_MerR-like_sg1 Heli 50.4 95 0.0021 26.4 7.7 25 329-354 35-59 (107)
196 KOG2077 JNK/SAPK-associated pr 50.2 1.3E+02 0.0029 34.4 10.4 32 313-344 304-335 (832)
197 PRK05771 V-type ATP synthase s 50.1 82 0.0018 35.0 9.0 20 354-373 46-65 (646)
198 PF03961 DUF342: Protein of un 50.0 1.2E+02 0.0026 32.3 9.9 19 349-367 325-343 (451)
199 PF04799 Fzo_mitofusin: fzo-li 49.8 1.3E+02 0.0028 29.2 9.1 50 384-433 115-164 (171)
200 PF06160 EzrA: Septation ring 49.8 1.4E+02 0.0031 33.0 10.7 55 392-446 379-433 (560)
201 PF06160 EzrA: Septation ring 49.7 4E+02 0.0087 29.5 15.5 51 312-367 209-261 (560)
202 PRK10869 recombination and rep 49.2 2E+02 0.0044 31.8 11.7 11 247-257 192-202 (553)
203 PRK00409 recombination and DNA 49.0 2.5E+02 0.0054 32.5 12.8 22 275-296 440-461 (782)
204 PF09730 BicD: Microtubule-ass 49.0 1.9E+02 0.0042 33.5 11.8 42 400-441 77-118 (717)
205 PF13870 DUF4201: Domain of un 48.9 2.2E+02 0.0048 26.3 15.0 67 386-452 78-144 (177)
206 PF02009 Rifin_STEVOR: Rifin/s 48.9 16 0.00035 37.7 3.2 41 370-410 31-71 (299)
207 PF12777 MT: Microtubule-bindi 48.8 94 0.002 32.0 8.7 26 330-361 183-208 (344)
208 PRK03947 prefoldin subunit alp 48.5 1.6E+02 0.0035 26.2 9.1 15 334-348 37-51 (140)
209 PRK14157 heat shock protein Gr 47.7 30 0.00065 34.6 4.7 38 418-455 96-133 (227)
210 PF05816 TelA: Toxic anion res 47.6 3.4E+02 0.0073 28.0 13.7 119 288-410 7-130 (333)
211 KOG0994 Extracellular matrix g 47.5 4.8E+02 0.01 32.6 14.7 15 333-347 1611-1625(1758)
212 KOG0971 Microtubule-associated 47.5 5.6E+02 0.012 31.2 15.1 24 348-371 329-352 (1243)
213 cd04770 HTH_HMRTR Helix-Turn-H 47.2 1.2E+02 0.0026 26.3 7.9 55 296-354 5-61 (123)
214 PF12128 DUF3584: Protein of u 47.0 4.3E+02 0.0094 32.0 14.8 37 344-380 761-800 (1201)
215 PRK14156 heat shock protein Gr 46.9 83 0.0018 30.3 7.4 49 408-456 36-84 (177)
216 KOG4674 Uncharacterized conser 46.9 3.8E+02 0.0082 34.4 14.4 158 272-435 21-186 (1822)
217 PF05010 TACC: Transforming ac 46.9 3E+02 0.0065 27.2 16.6 58 311-370 48-109 (207)
218 PRK14127 cell division protein 46.7 1.1E+02 0.0025 27.4 7.8 12 417-428 89-100 (109)
219 PF05781 MRVI1: MRVI1 protein; 46.6 1.8E+02 0.0038 32.8 10.7 29 330-362 187-217 (538)
220 KOG0976 Rho/Rac1-interacting s 46.4 2.7E+02 0.0058 33.3 12.3 23 345-367 338-360 (1265)
221 PF14915 CCDC144C: CCDC144C pr 46.2 3.8E+02 0.0082 28.3 12.4 36 410-445 211-246 (305)
222 KOG0161 Myosin class II heavy 46.1 3.3E+02 0.0072 35.2 13.9 53 392-444 1083-1135(1930)
223 PRK13752 putative transcriptio 46.0 1.5E+02 0.0033 27.1 8.7 57 295-355 11-69 (144)
224 PF08614 ATG16: Autophagy prot 46.0 1.5E+02 0.0033 28.1 9.0 22 346-367 83-104 (194)
225 PF07888 CALCOCO1: Calcium bin 46.0 2.7E+02 0.0058 31.5 12.0 16 144-159 36-51 (546)
226 KOG4302 Microtubule-associated 45.9 3.8E+02 0.0083 30.9 13.4 23 413-435 160-183 (660)
227 PF07246 Phlebovirus_NSM: Phle 45.5 1.6E+02 0.0035 30.3 9.5 38 294-332 56-93 (264)
228 TIGR01477 RIFIN variant surfac 45.4 46 0.00099 35.4 5.9 41 370-410 54-94 (353)
229 cd04785 HTH_CadR-PbrR-like Hel 45.3 1.1E+02 0.0023 27.1 7.4 26 328-354 36-61 (126)
230 PRK14141 heat shock protein Gr 45.2 35 0.00076 33.6 4.7 33 421-453 53-85 (209)
231 cd07620 BAR_SH3BP1 The Bin/Amp 45.2 2.7E+02 0.0057 28.7 11.0 84 327-410 111-210 (257)
232 KOG1003 Actin filament-coating 45.0 3.3E+02 0.0072 27.2 13.8 110 332-447 23-136 (205)
233 cd07616 BAR_Endophilin_B1 The 44.9 3.1E+02 0.0068 27.5 11.3 35 327-361 123-157 (229)
234 KOG0962 DNA repair protein RAD 44.7 2.6E+02 0.0056 34.6 12.4 111 336-446 787-904 (1294)
235 PF00042 Globin: Globin plant 44.6 61 0.0013 26.5 5.5 41 284-324 21-75 (110)
236 PRK14145 heat shock protein Gr 44.5 47 0.001 32.5 5.4 49 408-456 54-102 (196)
237 cd01108 HTH_CueR Helix-Turn-He 44.5 1.1E+02 0.0023 27.1 7.3 55 296-354 5-61 (127)
238 KOG0982 Centrosomal protein Nu 44.3 2.4E+02 0.0052 31.2 11.0 34 415-448 299-332 (502)
239 PLN02320 seryl-tRNA synthetase 44.1 1.5E+02 0.0032 32.9 9.7 14 414-427 145-158 (502)
240 PF14735 HAUS4: HAUS augmin-li 43.9 3.5E+02 0.0076 27.2 13.8 54 305-368 104-157 (238)
241 KOG0979 Structural maintenance 43.3 7E+02 0.015 30.5 16.2 71 272-347 117-187 (1072)
242 PF03962 Mnd1: Mnd1 family; I 43.0 2.1E+02 0.0045 27.5 9.5 53 392-444 113-166 (188)
243 PF10267 Tmemb_cc2: Predicted 43.0 3.1E+02 0.0068 29.7 11.6 73 338-426 245-318 (395)
244 PF10146 zf-C4H2: Zinc finger- 42.8 2.8E+02 0.0061 27.7 10.6 38 384-421 66-103 (230)
245 KOG0804 Cytoplasmic Zn-finger 42.8 2.7E+02 0.006 30.9 11.2 14 279-292 325-338 (493)
246 KOG0243 Kinesin-like protein [ 42.8 6E+02 0.013 31.0 14.7 114 294-407 383-512 (1041)
247 PRK14146 heat shock protein Gr 42.8 44 0.00095 33.0 5.0 51 406-456 61-111 (215)
248 KOG4797 Transcriptional regula 42.6 88 0.0019 28.6 6.4 31 405-435 66-96 (123)
249 KOG4568 Cytoskeleton-associate 42.4 1.2E+02 0.0025 34.9 8.8 82 353-434 580-661 (664)
250 KOG1760 Molecular chaperone Pr 42.3 1.1E+02 0.0023 28.6 6.9 17 334-350 37-53 (131)
251 PF03112 DUF244: Uncharacteriz 42.2 2.8E+02 0.006 26.7 9.8 59 344-410 37-102 (158)
252 PF10779 XhlA: Haemolysin XhlA 42.1 1.1E+02 0.0023 24.8 6.4 14 414-427 35-48 (71)
253 TIGR01069 mutS2 MutS2 family p 41.9 1.8E+02 0.0039 33.7 10.3 24 274-297 434-457 (771)
254 cd00632 Prefoldin_beta Prefold 41.9 1.9E+02 0.0042 24.7 8.2 16 334-349 27-42 (105)
255 PF05667 DUF812: Protein of un 41.8 5.7E+02 0.012 29.0 14.0 12 21-32 36-47 (594)
256 PRK14150 heat shock protein Gr 41.7 57 0.0012 31.6 5.5 40 417-456 56-95 (193)
257 PF10046 BLOC1_2: Biogenesis o 41.7 1.4E+02 0.003 25.7 7.3 47 392-438 52-98 (99)
258 PF05701 WEMBL: Weak chloropla 41.7 3.8E+02 0.0082 29.5 12.3 34 393-426 387-420 (522)
259 PF10018 Med4: Vitamin-D-recep 41.7 1.6E+02 0.0034 28.0 8.3 50 361-410 12-61 (188)
260 KOG3850 Predicted membrane pro 41.5 3.1E+02 0.0068 30.0 11.2 51 393-443 310-362 (455)
261 PRK09514 zntR zinc-responsive 41.5 2.3E+02 0.0051 25.6 9.1 26 328-354 37-62 (140)
262 cd01111 HTH_MerD Helix-Turn-He 41.5 2.3E+02 0.0049 24.6 8.7 62 296-368 5-68 (107)
263 KOG2441 mRNA splicing factor/p 41.4 1.7E+02 0.0036 32.2 9.3 58 390-448 312-382 (506)
264 PRK13169 DNA replication intia 41.4 1.4E+02 0.0031 26.8 7.6 48 368-415 5-52 (110)
265 KOG4657 Uncharacterized conser 41.4 4.1E+02 0.0088 27.2 15.0 43 383-425 91-133 (246)
266 PF10174 Cast: RIM-binding pro 41.4 3.8E+02 0.0082 31.5 12.7 26 386-411 344-369 (775)
267 PRK10476 multidrug resistance 41.2 1.7E+02 0.0037 29.5 9.1 21 435-455 198-218 (346)
268 PF05531 NPV_P10: Nucleopolyhe 41.0 1.7E+02 0.0036 24.9 7.5 44 393-436 22-65 (75)
269 PRK13428 F0F1 ATP synthase sub 40.9 5E+02 0.011 28.1 13.3 31 319-349 17-47 (445)
270 KOG0050 mRNA splicing protein 40.8 5E+02 0.011 29.6 12.9 63 305-370 456-518 (617)
271 PRK01194 V-type ATP synthase s 40.8 3.3E+02 0.0071 25.9 12.3 70 379-448 25-98 (185)
272 KOG3850 Predicted membrane pro 40.7 4.9E+02 0.011 28.6 12.5 22 407-428 347-368 (455)
273 cd04784 HTH_CadR-PbrR Helix-Tu 40.6 1.4E+02 0.0031 26.1 7.5 26 328-354 36-61 (127)
274 PRK14159 heat shock protein Gr 40.6 50 0.0011 31.7 4.9 38 417-454 41-78 (176)
275 COG1382 GimC Prefoldin, chaper 40.4 2.3E+02 0.0049 26.0 8.7 23 402-424 87-109 (119)
276 PF06248 Zw10: Centromere/kine 40.4 1.7E+02 0.0038 32.1 9.6 85 283-370 27-112 (593)
277 TIGR02047 CadR-PbrR Cd(II)/Pb( 40.4 1.4E+02 0.003 26.5 7.4 27 327-354 35-61 (127)
278 KOG0612 Rho-associated, coiled 40.3 2.4E+02 0.0053 34.7 11.2 12 356-367 466-477 (1317)
279 cd04787 HTH_HMRTR_unk Helix-Tu 40.3 2.7E+02 0.0058 24.8 9.4 25 329-354 37-61 (133)
280 PLN02678 seryl-tRNA synthetase 40.2 2.7E+02 0.0058 30.4 10.8 86 343-432 19-104 (448)
281 PF15254 CCDC14: Coiled-coil d 39.9 7.2E+02 0.016 29.6 16.0 31 373-403 482-512 (861)
282 PRK13729 conjugal transfer pil 39.9 1.1E+02 0.0024 33.8 7.9 48 392-442 79-126 (475)
283 PF11559 ADIP: Afadin- and alp 39.5 2.9E+02 0.0062 24.9 14.8 55 387-441 75-129 (151)
284 KOG4360 Uncharacterized coiled 39.5 6.2E+02 0.014 28.8 13.8 28 285-316 159-186 (596)
285 PF11932 DUF3450: Protein of u 39.5 3.8E+02 0.0082 26.3 11.7 15 369-383 54-68 (251)
286 KOG0963 Transcription factor/C 39.4 3.9E+02 0.0084 30.8 12.0 19 414-432 190-208 (629)
287 KOG0978 E3 ubiquitin ligase in 39.3 4.7E+02 0.01 30.5 12.8 12 287-298 355-366 (698)
288 PRK13729 conjugal transfer pil 39.3 1E+02 0.0022 34.1 7.4 44 400-443 77-120 (475)
289 KOG4809 Rab6 GTPase-interactin 39.1 4.5E+02 0.0098 30.1 12.3 56 388-445 390-446 (654)
290 PF06005 DUF904: Protein of un 38.9 2.3E+02 0.005 23.6 8.1 12 411-422 58-69 (72)
291 PF06008 Laminin_I: Laminin Do 38.8 3.9E+02 0.0085 26.3 15.4 19 329-347 148-166 (264)
292 PF03233 Cauli_AT: Aphid trans 38.7 95 0.0021 29.9 6.4 37 386-422 122-158 (163)
293 cd01107 HTH_BmrR Helix-Turn-He 38.7 2.1E+02 0.0045 24.6 8.0 67 328-410 37-103 (108)
294 PF13874 Nup54: Nucleoporin co 38.6 1.6E+02 0.0034 26.8 7.6 29 416-444 68-96 (141)
295 cd04783 HTH_MerR1 Helix-Turn-H 38.4 2.6E+02 0.0056 24.5 8.7 25 328-353 36-60 (126)
296 TIGR00763 lon ATP-dependent pr 38.4 2.2E+02 0.0047 32.7 10.2 39 333-371 175-213 (775)
297 TIGR02338 gimC_beta prefoldin, 38.3 2.6E+02 0.0057 24.2 8.6 12 336-347 33-44 (110)
298 COG3879 Uncharacterized protei 38.2 1.8E+02 0.0038 29.8 8.5 66 368-434 34-103 (247)
299 COG1340 Uncharacterized archae 38.2 5E+02 0.011 27.3 15.2 30 414-443 208-237 (294)
300 PF02601 Exonuc_VII_L: Exonucl 38.0 4.2E+02 0.0091 26.6 11.2 13 296-308 124-136 (319)
301 COG5185 HEC1 Protein involved 37.8 5.2E+02 0.011 29.2 12.4 62 361-422 285-360 (622)
302 PF03999 MAP65_ASE1: Microtubu 37.8 11 0.00023 41.8 0.0 126 311-451 167-303 (619)
303 PF12128 DUF3584: Protein of u 37.6 7.7E+02 0.017 30.0 14.9 37 286-322 367-403 (1201)
304 PF05384 DegS: Sensor protein 37.6 3.7E+02 0.008 25.6 14.3 27 352-378 28-55 (159)
305 PRK14147 heat shock protein Gr 37.5 56 0.0012 31.1 4.7 31 388-418 28-58 (172)
306 PF12325 TMF_TATA_bd: TATA ele 37.5 2E+02 0.0044 26.1 8.0 60 361-420 51-110 (120)
307 cd07651 F-BAR_PombeCdc15_like 37.4 3.9E+02 0.0084 25.8 13.3 30 411-446 187-216 (236)
308 PRK10227 DNA-binding transcrip 37.2 3.2E+02 0.0069 24.7 9.3 26 328-354 36-61 (135)
309 PF08946 Osmo_CC: Osmosensory 37.0 68 0.0015 25.1 4.1 18 393-410 23-40 (46)
310 TIGR03017 EpsF chain length de 36.7 2.6E+02 0.0055 29.1 9.7 15 353-367 173-187 (444)
311 PF11338 DUF3140: Protein of u 36.7 44 0.00095 29.4 3.5 30 318-348 42-71 (92)
312 PF05667 DUF812: Protein of un 36.4 6.9E+02 0.015 28.4 13.9 28 402-429 443-470 (594)
313 KOG0612 Rho-associated, coiled 36.1 5.3E+02 0.011 32.1 13.0 37 387-423 513-549 (1317)
314 cd07595 BAR_RhoGAP_Rich-like T 36.1 4.6E+02 0.0099 26.2 11.1 38 326-363 110-147 (244)
315 PF05701 WEMBL: Weak chloropla 36.0 5.6E+02 0.012 28.2 12.6 15 346-360 220-234 (522)
316 PF04949 Transcrip_act: Transc 36.0 2.5E+02 0.0054 27.0 8.5 68 353-433 86-158 (159)
317 KOG1176 Acyl-CoA synthetase [L 35.8 26 0.00056 38.7 2.4 39 263-304 425-463 (537)
318 PF07798 DUF1640: Protein of u 35.5 3.8E+02 0.0082 25.1 14.2 21 330-350 15-35 (177)
319 PRK14164 heat shock protein Gr 35.5 51 0.0011 32.7 4.2 33 387-419 79-111 (218)
320 PF04102 SlyX: SlyX; InterPro 35.4 2E+02 0.0043 23.3 6.9 14 413-426 39-52 (69)
321 KOG0104 Molecular chaperones G 35.3 5.5E+02 0.012 30.6 12.6 31 326-362 649-679 (902)
322 PF05008 V-SNARE: Vesicle tran 35.3 1.8E+02 0.004 23.2 6.7 59 388-446 2-66 (79)
323 COG0216 PrfA Protein chain rel 35.0 2.8E+02 0.0061 29.8 9.7 16 409-424 86-101 (363)
324 PRK06569 F0F1 ATP synthase sub 34.8 4.1E+02 0.0088 25.3 12.1 21 388-408 61-81 (155)
325 cd01040 globin Globins are hem 34.6 1.6E+02 0.0035 24.6 6.6 44 284-327 24-79 (140)
326 PF12999 PRKCSH-like: Glucosid 34.5 2.1E+02 0.0045 27.8 8.0 15 415-429 155-169 (176)
327 KOG1772 Vacuolar H+-ATPase V1 34.5 3.6E+02 0.0078 24.6 10.1 60 374-436 31-95 (108)
328 PF12329 TMF_DNA_bd: TATA elem 34.5 2.7E+02 0.0058 23.1 8.6 25 415-439 42-66 (74)
329 TIGR02044 CueR Cu(I)-responsiv 34.2 1.9E+02 0.0042 25.5 7.3 56 295-354 4-61 (127)
330 PLN02939 transferase, transfer 34.2 6E+02 0.013 30.7 13.0 48 316-365 161-208 (977)
331 PF04912 Dynamitin: Dynamitin 34.0 5.8E+02 0.012 26.8 13.7 23 404-426 341-363 (388)
332 PF04286 DUF445: Protein of un 33.9 4.8E+02 0.01 25.8 15.3 60 305-365 181-245 (367)
333 PRK05431 seryl-tRNA synthetase 33.9 3.1E+02 0.0068 29.3 10.0 18 350-367 41-58 (425)
334 PRK00578 prfB peptide chain re 33.7 5.5E+02 0.012 27.5 11.7 31 335-366 8-38 (367)
335 PF09602 PhaP_Bmeg: Polyhydrox 33.7 4.5E+02 0.0098 25.5 11.6 46 387-432 57-104 (165)
336 cd04782 HTH_BltR Helix-Turn-He 33.6 1.9E+02 0.004 24.5 6.8 26 328-354 36-61 (97)
337 PF09403 FadA: Adhesion protei 33.6 3.4E+02 0.0073 25.0 8.8 57 385-441 23-80 (126)
338 COG4467 Regulator of replicati 33.5 1.4E+02 0.0031 27.2 6.3 48 366-413 3-50 (114)
339 PF05983 Med7: MED7 protein; 33.2 1.7E+02 0.0037 27.5 7.1 15 352-366 105-119 (162)
340 KOG4438 Centromere-associated 33.2 5.7E+02 0.012 28.3 11.7 101 301-410 206-311 (446)
341 cd07594 BAR_Endophilin_B The B 33.1 3.5E+02 0.0077 27.0 9.6 35 327-361 123-157 (229)
342 PF06705 SF-assemblin: SF-asse 33.1 4.8E+02 0.01 25.6 14.3 94 329-426 65-159 (247)
343 PF05529 Bap31: B-cell recepto 33.0 2.7E+02 0.0059 26.0 8.5 16 413-428 175-190 (192)
344 PF05483 SCP-1: Synaptonemal c 33.0 6E+02 0.013 29.9 12.3 62 383-444 231-292 (786)
345 cd04790 HTH_Cfa-like_unk Helix 33.0 4.2E+02 0.0091 24.9 10.1 27 327-354 36-62 (172)
346 KOG0500 Cyclic nucleotide-gate 32.9 2E+02 0.0044 32.2 8.5 99 326-432 406-505 (536)
347 cd04779 HTH_MerR-like_sg4 Heli 32.9 3.8E+02 0.0083 24.4 9.8 25 329-354 36-60 (134)
348 KOG0161 Myosin class II heavy 32.8 1.1E+03 0.023 30.9 15.4 32 337-368 1315-1346(1930)
349 PF02994 Transposase_22: L1 tr 32.7 1.3E+02 0.0029 31.6 6.9 14 414-427 173-186 (370)
350 PF13166 AAA_13: AAA domain 32.5 7.3E+02 0.016 27.5 15.5 45 402-446 427-471 (712)
351 KOG0243 Kinesin-like protein [ 32.3 7.7E+02 0.017 30.1 13.5 10 242-251 262-271 (1041)
352 PRK00409 recombination and DNA 32.3 8.7E+02 0.019 28.3 14.2 10 392-401 584-593 (782)
353 KOG4643 Uncharacterized coiled 32.3 7.8E+02 0.017 30.3 13.3 46 394-439 469-514 (1195)
354 PF06005 DUF904: Protein of un 32.1 3E+02 0.0065 22.9 9.8 9 415-423 55-63 (72)
355 PTZ00419 valyl-tRNA synthetase 32.1 1.3E+02 0.0029 35.4 7.5 50 392-441 936-992 (995)
356 COG0419 SbcC ATPase involved i 32.0 8.8E+02 0.019 28.3 15.7 18 346-363 331-348 (908)
357 cd04775 HTH_Cfa-like Helix-Tur 31.9 3E+02 0.0066 23.4 7.9 25 329-354 37-61 (102)
358 PF09731 Mitofilin: Mitochondr 31.9 7.1E+02 0.015 27.2 14.8 14 419-432 374-387 (582)
359 TIGR01005 eps_transp_fam exopo 31.7 8E+02 0.017 27.7 14.5 24 297-320 157-180 (754)
360 cd07596 BAR_SNX The Bin/Amphip 31.7 4E+02 0.0086 24.2 14.0 20 412-431 151-170 (218)
361 COG0466 Lon ATP-dependent Lon 31.7 4.7E+02 0.01 30.8 11.4 18 310-327 129-146 (782)
362 PF14483 Cut8_M: Cut8 dimerisa 31.7 18 0.00039 26.7 0.3 20 284-303 16-35 (38)
363 KOG1029 Endocytic adaptor prot 31.6 2.2E+02 0.0049 33.8 8.8 33 332-365 391-423 (1118)
364 KOG0570 Transcriptional coacti 31.6 3.8E+02 0.0083 27.0 9.3 28 299-327 71-101 (223)
365 PLN02372 violaxanthin de-epoxi 31.6 4.9E+02 0.011 28.8 10.9 27 412-438 424-450 (455)
366 PF01025 GrpE: GrpE; InterPro 31.5 22 0.00047 32.2 0.9 40 384-423 17-56 (165)
367 cd04789 HTH_Cfa Helix-Turn-Hel 31.4 3.2E+02 0.0069 23.3 7.9 26 328-354 36-61 (102)
368 PF10498 IFT57: Intra-flagella 31.3 5.2E+02 0.011 27.5 11.0 44 390-433 271-314 (359)
369 PF14257 DUF4349: Domain of un 31.2 2E+02 0.0044 28.2 7.6 19 284-302 65-83 (262)
370 PTZ00046 rifin; Provisional 31.0 1.3E+02 0.0028 32.2 6.5 77 370-446 51-139 (358)
371 KOG3046 Transcription factor, 30.9 4.8E+02 0.01 24.9 9.6 41 284-327 21-61 (147)
372 COG1842 PspA Phage shock prote 30.7 5.5E+02 0.012 25.6 14.8 61 308-370 7-71 (225)
373 PF09006 Surfac_D-trimer: Lung 30.6 1.1E+02 0.0023 24.1 4.3 26 409-434 2-27 (46)
374 PF07851 TMPIT: TMPIT-like pro 30.5 4.3E+02 0.0094 28.0 10.1 25 380-404 34-58 (330)
375 PF13805 Pil1: Eisosome compon 30.4 6.3E+02 0.014 26.2 11.9 46 391-440 147-192 (271)
376 KOG4420 Uncharacterized conser 30.4 1.9E+02 0.0041 30.3 7.3 66 294-364 142-211 (325)
377 PF10191 COG7: Golgi complex c 30.3 6.6E+02 0.014 29.1 12.4 51 318-369 45-95 (766)
378 TIGR02132 phaR_Bmeg polyhydrox 30.2 3.8E+02 0.0082 26.5 8.9 33 332-367 70-102 (189)
379 TIGR02043 ZntR Zn(II)-responsi 30.1 4E+02 0.0086 23.7 9.2 26 328-354 37-62 (131)
380 KOG0796 Spliceosome subunit [R 30.1 4.5E+02 0.0098 27.9 10.1 66 312-381 84-152 (319)
381 TIGR01837 PHA_granule_1 poly(h 30.1 2.7E+02 0.0059 24.8 7.5 16 430-445 99-114 (118)
382 KOG2196 Nuclear porin [Nuclear 29.7 6.4E+02 0.014 26.0 11.2 102 333-441 133-247 (254)
383 PF15066 CAGE1: Cancer-associa 29.6 4.9E+02 0.011 29.2 10.6 88 319-442 332-421 (527)
384 PRK10698 phage shock protein P 29.6 5.5E+02 0.012 25.2 10.5 8 414-421 135-142 (222)
385 KOG2391 Vacuolar sorting prote 29.2 2.4E+02 0.0053 30.2 8.1 34 385-418 242-275 (365)
386 COG0172 SerS Seryl-tRNA synthe 29.2 3.7E+02 0.008 29.5 9.6 24 411-434 73-96 (429)
387 PF00769 ERM: Ezrin/radixin/mo 29.1 4.2E+02 0.0092 26.4 9.4 42 386-427 83-124 (246)
388 KOG4348 Adaptor protein CMS/SE 29.0 1.5E+02 0.0032 33.0 6.6 15 423-437 611-625 (627)
389 cd01282 HTH_MerR-like_sg3 Heli 28.9 2.1E+02 0.0046 24.7 6.5 28 328-356 35-62 (112)
390 KOG4603 TBP-1 interacting prot 28.8 3.9E+02 0.0084 26.5 8.7 43 386-429 104-146 (201)
391 COG0216 PrfA Protein chain rel 28.8 2.5E+02 0.0055 30.1 8.1 16 413-428 83-98 (363)
392 PF01166 TSC22: TSC-22/dip/bun 28.7 72 0.0016 26.1 3.3 29 407-435 15-43 (59)
393 COG1422 Predicted membrane pro 28.5 1.9E+02 0.0042 28.7 6.8 21 304-324 44-64 (201)
394 PF14197 Cep57_CLD_2: Centroso 28.5 3.4E+02 0.0073 22.4 8.4 36 390-425 31-66 (69)
395 cd00890 Prefoldin Prefoldin is 28.4 2.2E+02 0.0048 24.3 6.5 15 334-348 30-44 (129)
396 PLN02281 chlorophyllide a oxyg 28.4 1.8E+02 0.0039 32.7 7.3 58 356-428 105-164 (536)
397 KOG0978 E3 ubiquitin ligase in 28.4 1E+03 0.022 27.9 14.6 57 386-442 567-623 (698)
398 COG0576 GrpE Molecular chapero 28.4 1.1E+02 0.0023 29.6 5.0 50 407-456 44-93 (193)
399 PF03148 Tektin: Tektin family 28.3 4.9E+02 0.011 27.5 10.2 13 356-368 249-261 (384)
400 KOG3859 Septins (P-loop GTPase 28.3 4.4E+02 0.0095 28.2 9.6 21 330-351 288-308 (406)
401 PF06156 DUF972: Protein of un 28.2 2.7E+02 0.006 24.7 7.1 26 414-439 30-55 (107)
402 PF04880 NUDE_C: NUDE protein, 28.2 95 0.0021 29.8 4.6 14 354-367 3-16 (166)
403 PF15450 DUF4631: Domain of un 28.1 9.2E+02 0.02 27.3 14.0 102 331-434 348-466 (531)
404 PRK14562 haloacid dehalogenase 28.1 2.7E+02 0.006 27.0 7.8 43 307-349 109-151 (204)
405 COG3937 Uncharacterized conser 28.1 3E+02 0.0064 25.1 7.3 17 416-432 86-102 (108)
406 KOG0018 Structural maintenance 28.1 8.3E+02 0.018 30.1 12.8 54 392-445 697-750 (1141)
407 PF13935 Ead_Ea22: Ead/Ea22-li 28.0 3.9E+02 0.0085 24.3 8.3 13 414-426 127-139 (139)
408 TIGR01010 BexC_CtrB_KpsE polys 27.9 6.7E+02 0.014 25.6 13.8 24 297-320 133-156 (362)
409 TIGR01730 RND_mfp RND family e 27.9 4.4E+02 0.0095 25.5 9.2 19 437-455 126-144 (322)
410 PF04849 HAP1_N: HAP1 N-termin 27.7 7.4E+02 0.016 26.1 11.3 87 351-437 160-265 (306)
411 PF04849 HAP1_N: HAP1 N-termin 27.6 6.1E+02 0.013 26.7 10.5 29 417-445 224-252 (306)
412 cd07593 BAR_MUG137_fungi The B 27.6 6.1E+02 0.013 25.1 10.4 29 335-363 112-140 (215)
413 PLN02943 aminoacyl-tRNA ligase 27.3 1.6E+02 0.0036 34.7 7.2 51 391-441 895-952 (958)
414 KOG3809 Microtubule-binding pr 27.3 6.9E+02 0.015 28.1 11.2 123 281-429 440-576 (583)
415 KOG2077 JNK/SAPK-associated pr 27.0 3.1E+02 0.0067 31.6 8.7 90 333-432 310-406 (832)
416 TIGR01000 bacteriocin_acc bact 27.0 7.6E+02 0.016 26.3 11.4 39 417-455 288-326 (457)
417 PRK10787 DNA-binding ATP-depen 26.3 2.4E+02 0.0052 32.8 8.1 39 331-369 175-213 (784)
418 PF05911 DUF869: Plant protein 26.1 5E+02 0.011 30.5 10.5 27 419-445 665-691 (769)
419 PF13514 AAA_27: AAA domain 25.9 8.4E+02 0.018 29.2 12.6 34 399-432 736-769 (1111)
420 PF12761 End3: Actin cytoskele 25.7 5.4E+02 0.012 25.5 9.3 21 275-295 17-37 (195)
421 KOG3976 Mitochondrial F1F0-ATP 25.7 7.5E+02 0.016 25.5 14.0 23 395-417 176-198 (247)
422 cd01106 HTH_TipAL-Mta Helix-Tu 25.5 1.8E+02 0.0039 24.6 5.4 59 296-358 5-65 (103)
423 PF07200 Mod_r: Modifier of ru 25.5 4.9E+02 0.011 23.3 9.6 14 329-342 2-15 (150)
424 PF07544 Med9: RNA polymerase 25.5 4E+02 0.0088 22.3 8.1 53 353-415 30-82 (83)
425 TIGR00020 prfB peptide chain r 25.3 8.7E+02 0.019 26.1 11.6 94 333-428 6-114 (364)
426 PRK14149 heat shock protein Gr 25.2 1.1E+02 0.0024 29.9 4.5 36 387-422 45-80 (191)
427 COG4420 Predicted membrane pro 25.1 6.9E+02 0.015 24.8 9.8 46 389-434 131-176 (191)
428 CHL00094 dnaK heat shock prote 25.0 4E+02 0.0088 29.6 9.3 27 329-355 500-526 (621)
429 PF10498 IFT57: Intra-flagella 24.9 7.9E+02 0.017 26.1 11.0 12 300-311 210-221 (359)
430 PF10147 CR6_interact: Growth 24.9 7.2E+02 0.016 25.0 13.5 21 283-304 58-78 (217)
431 PF05384 DegS: Sensor protein 24.9 6.1E+02 0.013 24.1 10.8 34 397-430 89-122 (159)
432 COG5493 Uncharacterized conser 24.9 6.5E+02 0.014 25.5 9.6 23 414-436 89-111 (231)
433 COG0172 SerS Seryl-tRNA synthe 24.9 5.3E+02 0.012 28.3 9.9 31 402-432 71-101 (429)
434 TIGR01612 235kDa-fam reticuloc 24.8 1.1E+03 0.024 31.8 13.5 62 382-443 555-616 (2757)
435 cd07617 BAR_Endophilin_B2 The 24.7 7.2E+02 0.016 24.9 10.2 32 329-360 125-156 (220)
436 cd04776 HTH_GnyR Helix-Turn-He 24.7 1.6E+02 0.0034 26.0 5.0 32 414-445 81-112 (118)
437 PF14772 NYD-SP28: Sperm tail 24.5 4.5E+02 0.0097 22.4 7.8 40 392-431 54-94 (104)
438 TIGR03752 conj_TIGR03752 integ 24.5 4.4E+02 0.0094 29.4 9.2 6 331-336 42-47 (472)
439 PF04124 Dor1: Dor1-like famil 24.5 76 0.0017 32.5 3.5 81 263-351 108-188 (338)
440 PRK05729 valS valyl-tRNA synth 24.4 2.1E+02 0.0045 33.3 7.2 50 391-440 817-873 (874)
441 KOG2685 Cystoskeletal protein 24.3 8.8E+02 0.019 26.7 11.3 78 285-367 227-305 (421)
442 PF11727 ISG65-75: Invariant s 24.2 7.5E+02 0.016 25.0 11.0 101 298-411 29-129 (286)
443 cd07598 BAR_FAM92 The Bin/Amph 24.2 6.9E+02 0.015 24.5 13.0 24 413-436 135-158 (211)
444 PF09325 Vps5: Vps5 C terminal 24.0 6.1E+02 0.013 23.8 12.8 23 411-433 168-190 (236)
445 PF04012 PspA_IM30: PspA/IM30 23.9 6.3E+02 0.014 24.0 14.5 31 405-435 104-134 (221)
446 PF10359 Fmp27_WPPW: RNA pol I 23.8 2.7E+02 0.0058 30.3 7.5 15 354-368 166-180 (475)
447 KOG2991 Splicing regulator [RN 23.8 6.4E+02 0.014 26.5 9.7 49 399-447 136-197 (330)
448 KOG2751 Beclin-like protein [S 23.8 6.9E+02 0.015 27.7 10.4 87 361-447 150-238 (447)
449 PF06120 Phage_HK97_TLTM: Tail 23.6 4.5E+02 0.0098 27.5 8.7 72 369-446 36-107 (301)
450 PHA02675 ORF104 fusion protein 23.5 4.2E+02 0.0092 23.3 7.2 48 394-444 35-82 (90)
451 PF03179 V-ATPase_G: Vacuolar 23.5 4.6E+02 0.01 22.3 9.9 70 374-443 29-101 (105)
452 PRK07090 class II aldolase/add 23.3 92 0.002 31.1 3.7 72 290-361 180-252 (260)
453 KOG2010 Double stranded RNA bi 23.3 4.3E+02 0.0092 28.5 8.5 61 334-403 104-165 (405)
454 PRK11820 hypothetical protein; 23.2 8.4E+02 0.018 25.1 12.6 32 305-338 81-112 (288)
455 PRK13411 molecular chaperone D 23.1 6.9E+02 0.015 28.2 10.8 21 329-349 500-520 (653)
456 PF04799 Fzo_mitofusin: fzo-li 23.1 6.1E+02 0.013 24.7 8.9 44 386-429 124-167 (171)
457 cd04781 HTH_MerR-like_sg6 Heli 23.0 5.1E+02 0.011 22.6 7.9 27 327-354 34-60 (120)
458 KOG3433 Protein involved in me 22.9 7.7E+02 0.017 24.6 10.6 43 401-443 132-182 (203)
459 PF12795 MscS_porin: Mechanose 22.9 7.1E+02 0.015 24.2 11.6 115 329-445 16-138 (240)
460 TIGR00293 prefoldin, archaeal 22.8 2.8E+02 0.0062 24.0 6.3 16 333-348 29-44 (126)
461 PF12126 DUF3583: Protein of u 22.8 6.7E+02 0.015 26.6 9.7 17 416-432 71-87 (324)
462 PF06295 DUF1043: Protein of u 22.8 4.1E+02 0.0089 23.9 7.4 40 390-432 30-69 (128)
463 KOG3088 Secretory carrier memb 22.7 1.4E+02 0.003 31.4 4.9 21 390-410 65-85 (313)
464 TIGR01005 eps_transp_fam exopo 22.7 6.2E+02 0.013 28.6 10.3 9 286-294 172-180 (754)
465 CHL00094 dnaK heat shock prote 22.6 6.8E+02 0.015 27.9 10.5 12 178-189 408-419 (621)
466 PRK00736 hypothetical protein; 22.5 4.3E+02 0.0093 21.6 7.1 15 411-425 38-52 (68)
467 TIGR02971 heterocyst_DevB ABC 22.5 7.7E+02 0.017 24.5 10.2 25 431-455 190-214 (327)
468 PF08657 DASH_Spc34: DASH comp 22.5 4.3E+02 0.0092 26.9 8.2 82 313-426 159-259 (259)
469 PRK15002 redox-sensitivie tran 22.5 6.4E+02 0.014 23.5 9.1 70 331-412 49-120 (154)
470 PF06785 UPF0242: Uncharacteri 22.5 8E+02 0.017 26.6 10.3 82 356-440 73-154 (401)
471 PRK06664 fliD flagellar hook-a 22.4 5E+02 0.011 29.8 9.5 80 356-440 580-659 (661)
472 PF05700 BCAS2: Breast carcino 22.4 7.3E+02 0.016 24.2 10.1 72 353-426 145-216 (221)
473 PF04201 TPD52: Tumour protein 22.4 3.5E+02 0.0077 26.1 7.1 50 391-440 28-86 (162)
474 PF14643 DUF4455: Domain of un 22.3 1E+03 0.022 25.8 14.1 117 316-449 310-433 (473)
475 PF14735 HAUS4: HAUS augmin-li 22.3 5.3E+02 0.011 26.0 8.7 125 277-427 112-237 (238)
476 PF09766 FimP: Fms-interacting 22.2 3.4E+02 0.0073 28.5 7.7 53 389-444 101-153 (355)
477 PRK13169 DNA replication intia 22.2 4.1E+02 0.0088 23.9 7.1 52 395-446 4-55 (110)
478 KOG0980 Actin-binding protein 22.1 1.5E+03 0.032 27.6 14.6 112 307-437 435-546 (980)
479 PF09738 DUF2051: Double stran 22.0 4.3E+02 0.0094 27.5 8.3 61 351-424 112-172 (302)
480 PF00435 Spectrin: Spectrin re 22.0 3.8E+02 0.0082 20.7 11.5 103 335-445 2-105 (105)
481 smart00721 BAR BAR domain. 21.9 6.5E+02 0.014 23.4 15.8 157 282-445 69-239 (239)
482 PRK08032 fliD flagellar cappin 21.9 6E+02 0.013 27.5 9.7 76 356-436 386-461 (462)
483 PTZ00446 vacuolar sorting prot 21.8 6.6E+02 0.014 24.6 9.0 99 313-418 90-190 (191)
484 PF04899 MbeD_MobD: MbeD/MobD 21.8 4.8E+02 0.01 21.8 8.8 63 384-446 5-68 (70)
485 PRK08475 F0F1 ATP synthase sub 21.7 6.6E+02 0.014 23.4 11.7 102 355-456 42-147 (167)
486 PRK00290 dnaK molecular chaper 21.7 6.2E+02 0.013 28.2 9.9 82 361-446 503-591 (627)
487 KOG2264 Exostosin EXT1L [Signa 21.7 3.8E+02 0.0083 31.0 8.2 59 382-440 76-141 (907)
488 PRK01005 V-type ATP synthase s 21.6 7.8E+02 0.017 24.2 12.1 83 357-443 7-100 (207)
489 KOG4460 Nuclear pore complex, 21.4 1.1E+03 0.023 27.4 11.5 80 360-441 565-644 (741)
490 PF15188 CCDC-167: Coiled-coil 21.4 2.1E+02 0.0045 24.9 4.9 50 398-447 4-56 (85)
491 PF07820 TraC: TraC-like prote 21.3 2.5E+02 0.0054 24.9 5.4 56 387-445 4-61 (92)
492 KOG1961 Vacuolar sorting prote 21.3 1.1E+03 0.024 27.4 11.6 120 313-439 22-143 (683)
493 KOG2751 Beclin-like protein [S 21.2 1.2E+03 0.025 26.1 16.6 214 223-440 43-266 (447)
494 PF08776 VASP_tetra: VASP tetr 21.2 3.6E+02 0.0079 20.6 5.5 34 386-424 4-37 (40)
495 PF09403 FadA: Adhesion protei 21.2 6.5E+02 0.014 23.1 12.1 84 363-446 26-119 (126)
496 PF08336 P4Ha_N: Prolyl 4-Hydr 21.1 3.5E+02 0.0076 24.0 6.6 56 396-451 4-60 (134)
497 PF15070 GOLGA2L5: Putative go 21.1 1E+03 0.022 27.3 11.5 87 355-447 26-128 (617)
498 PF06825 HSBP1: Heat shock fac 21.0 3.2E+02 0.0069 21.9 5.5 45 388-432 2-47 (54)
499 PF09969 DUF2203: Uncharacteri 21.0 3.1E+02 0.0067 24.7 6.2 64 345-425 4-69 (120)
500 PF05478 Prominin: Prominin; 20.9 1E+03 0.022 27.7 11.7 109 310-442 609-717 (806)
No 1
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=100.00 E-value=1.4e-62 Score=478.31 Aligned_cols=216 Identities=50% Similarity=0.738 Sum_probs=211.1
Q ss_pred CCCCCCcceeeccccccCC---CCCcccccccccce-EEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHH
Q 012816 239 SPADGSRNFSFSGIDLASG---DSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLE 314 (456)
Q Consensus 239 ~~~~es~~Fs~~~i~~~~~---~~d~eE~~Svvset-v~VnGFqVl~Sqv~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn 314 (456)
.-|++|++|||++|.+|.| +++++|++|+++++ |+||||||++||++||++||+||||||+||+++|++||++||+
T Consensus 50 ~l~~~s~sftl~~~~~~~~~~~~~~~~e~~Sv~ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe 129 (269)
T PF05278_consen 50 ELPDESQSFTLSEIECMKGLKTNEGDEEMSSVISESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLE 129 (269)
T ss_pred CCCCcCccccHHHHHHHhcccccccchhhhhccccceeeECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHH
Confidence 4678999999999999997 56778999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHH
Q 012816 315 CLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKEL 394 (456)
Q Consensus 315 ~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkEL 394 (456)
+||+||++||++|+++||++||.+|+++|.||++|||+|+|||++|+||.++++++++|++++++|++++|.++..+.||
T Consensus 130 ~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~EL 209 (269)
T PF05278_consen 130 CLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEEL 209 (269)
T ss_pred HHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhh
Q 012816 395 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADE 454 (456)
Q Consensus 395 Ee~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~ 454 (456)
++++++|+++++++++++.||++|++||++||+++++|+++|.+++|||++|+||||+|+
T Consensus 210 e~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~sl~~~ 269 (269)
T PF05278_consen 210 EELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKSLLDE 269 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999985
No 2
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.72 E-value=3.7e-17 Score=156.89 Aligned_cols=175 Identities=20% Similarity=0.229 Sum_probs=132.1
Q ss_pred CccccccccccccCCCCCCCCCCCCCcceeeccccccCCCCCccccc-c--cc-cceEEe----ccEEeeccchHHHHHH
Q 012816 219 KVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQ-S--VI-SDSVSV----GKYHVRASISSILQSI 290 (456)
Q Consensus 219 ~~~~~~p~~~~~~~~g~~~~~~~~es~~Fs~~~i~~~~~~~d~eE~~-S--vv-setv~V----nGFqVl~Sqv~iV~~I 290 (456)
|-..+.|++...+..|+++.. ++...|.-+.+....+..|..+.. + .+ .+..++ |||+|+++|++++..|
T Consensus 94 g~~~~~~~~~~~~~~~g~~~~--~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~ 171 (297)
T KOG1987|consen 94 GFGKMLPLTLLIDCSNGFLVA--HKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERI 171 (297)
T ss_pred CcccccChHHhhcccCcEEEc--CceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHh
Confidence 335567777777777777655 334445444444433332221110 0 00 111334 9999999999999999
Q ss_pred HhhcccccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 012816 291 ISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 368 (456)
Q Consensus 291 FeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~--kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare 368 (456)
|++||++|+.|+.+++++|..||+.||++|++++ +++ +.++..++.+|..++.+++.+||+||||.++++++.++++
T Consensus 172 ~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~~ 250 (297)
T KOG1987|consen 172 FEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSL-QEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKKK 250 (297)
T ss_pred hcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccH-HHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999 877 9999999999999999999999999999999999998883
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012816 369 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 410 (456)
Q Consensus 369 ~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d 410 (456)
.+...+.+.+++++++..+.++......
T Consensus 251 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (297)
T KOG1987|consen 251 --------------KDLWYEIRLQELEEELKSLKDKCSDLEG 278 (297)
T ss_pred --------------HHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 1123556666667777777777666654
No 3
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=98.03 E-value=0.00031 Score=66.88 Aligned_cols=128 Identities=20% Similarity=0.332 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHH
Q 012816 311 YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLEST 390 (456)
Q Consensus 311 ~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~ 390 (456)
..|=+..+|++...+.-+.+ +...+..-..+|.+|+.-||+|.-|+.||+++...+. .+..+.+..+..+..++..
T Consensus 47 Glm~~f~~l~e~v~~l~idd-~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~---~~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 47 GLMVTFANLAEKVKKLQIDD-SRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKD---DQEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHHHHHHcccCC-cHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888444 8999999999999999999999999999999886662 2222222222222222222
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhh----HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 012816 391 ---KKELESQMNELALKEKEVAGL----KESVAKTKARLSDLELESNRLEQIIQATQSK 442 (456)
Q Consensus 391 ---kkELEe~l~eL~qKekev~d~----~~rv~e~k~RL~~LE~ess~L~~~v~~~kSK 442 (456)
.+++|+.+.+|.++-.++.+. +..-++....+.+|+-+...|.+.+.+++.+
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444444444443333331 1123334455666666666666666655543
No 4
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.66 E-value=5 Score=40.89 Aligned_cols=53 Identities=30% Similarity=0.456 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 439 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~ 439 (456)
++.++++|.+.-.+|..+.+++.+.+.++.++.+.+..+..+...+...|..+
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444454444444444444444444444444444444443333333333333
No 5
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.50 E-value=5.6 Score=40.92 Aligned_cols=66 Identities=20% Similarity=0.365 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccch
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 451 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl 451 (456)
.+..++.+|.+...++..+.+++.+.+.++.+...++.....+-..+...|..+.+.+++-.+.+.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~ 270 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTF 270 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 344555666666666666666666666666666666666666666666666667766666666554
No 6
>PRK11637 AmiB activator; Provisional
Probab=92.22 E-value=6.4 Score=41.21 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHh-hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHhHHHHHHHHHHHHHhhh
Q 012816 356 LRNILNEISEAIEF-STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE----VAGLKESVAKTKARLSDLELESN 430 (456)
Q Consensus 356 LekKLeEV~Eare~-~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKeke----v~d~~~rv~e~k~RL~~LE~ess 430 (456)
-...|+++...++- ....+.++.++ ..++...++++.+..+|....++ +..++..+.+....|.+|+....
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~----~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~ 243 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQ----SQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANES 243 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555532 22222222222 23344445555555555444444 55566666666777778887777
Q ss_pred hHHHHHHHhhhhh
Q 012816 431 RLEQIIQATQSKV 443 (456)
Q Consensus 431 ~L~~~v~~~kSKV 443 (456)
+|.+.|..++-..
T Consensus 244 ~L~~~I~~l~~~~ 256 (428)
T PRK11637 244 RLRDSIARAEREA 256 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776655433
No 7
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.07 E-value=1.6 Score=43.83 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 448 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~ 448 (456)
+++..+|-++.+++|.+++.++.+.++|+..++..+++|+.+..+|.--+.+++-+.+.+..
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 33444455556677777777777777788888888888877777766556666666655533
No 8
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.46 E-value=6.5 Score=47.44 Aligned_cols=51 Identities=4% Similarity=0.114 Sum_probs=41.7
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHH
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAA 379 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~e 379 (456)
-.+++.+|..+...+..|++..=+|+=|+.++..+.+....++.+......
T Consensus 215 ~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~ 265 (1353)
T TIGR02680 215 PPLDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLR 265 (1353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999998888888888888888777766666664333
No 9
>PRK11637 AmiB activator; Provisional
Probab=89.05 E-value=12 Score=39.20 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHH
Q 012816 307 SMRAYYLECLCSVVQ 321 (456)
Q Consensus 307 ~lRs~ymn~Ll~LIe 321 (456)
.+|-..+-+|+.++-
T Consensus 19 ~~~~~~~~~ll~~~~ 33 (428)
T PRK11637 19 AIRPILYASVLSAGV 33 (428)
T ss_pred hhhhHHHHHHHHHHH
Confidence 344444444444333
No 10
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=88.91 E-value=5.1 Score=36.61 Aligned_cols=37 Identities=14% Similarity=0.411 Sum_probs=26.9
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816 412 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 448 (456)
Q Consensus 412 ~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~ 448 (456)
++.+.++++-+.++..+...+...|..|..|+...++
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777777777777777777777778888776654
No 11
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.25 E-value=14 Score=39.14 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhh
Q 012816 391 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESN 430 (456)
Q Consensus 391 kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess 430 (456)
+..+++...++...+.++..+..+..+...+|.+|+.+..
T Consensus 350 ~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~ 389 (562)
T PHA02562 350 KQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 3333333333344444444443333333334444333333
No 12
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.02 E-value=12 Score=35.95 Aligned_cols=12 Identities=42% Similarity=0.496 Sum_probs=6.5
Q ss_pred hhhhhHHHHHHH
Q 012816 354 DWLRNILNEISE 365 (456)
Q Consensus 354 DWLekKLeEV~E 365 (456)
+=|+.+++++.+
T Consensus 37 ~~l~~~i~~~l~ 48 (302)
T PF10186_consen 37 EELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHH
Confidence 445555555554
No 13
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=86.94 E-value=8.9 Score=33.73 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=20.4
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHH
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL 360 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLekKL 360 (456)
+-.+.++|..+..+.. |++.||-|+=.+.-|
T Consensus 35 R~Y~~~~l~~l~~I~~-lr~~G~~L~~I~~~l 65 (118)
T cd04776 35 RVYSRRDRARLKLILR-GKRLGFSLEEIRELL 65 (118)
T ss_pred cccCHHHHHHHHHHHH-HHHCCCCHHHHHHHH
Confidence 5677778776655544 888999765444443
No 14
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.50 E-value=8.2 Score=43.93 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=59.6
Q ss_pred eeccchHHHHHHHhhccc--cc---ccCcccchhHHHHHHHHHHHHHHHHhcchh--hhccHHHHHHHHHHHhHHHhcCc
Q 012816 279 VRASISSILQSIISRYGD--IA---ANCNLESNSMRAYYLECLCSVVQELQSTSL--MQMTKAKVKEMMAVLKDVESAQI 351 (456)
Q Consensus 279 Vl~Sqv~iV~~IFeKHpD--IA---snf~lKs~~lRs~ymn~Ll~LIetL~kspl--~eLS~~dL~ea~~~L~dL~~agf 351 (456)
..+++...++.||.+-.. |. ++ +...+.- .-.+++|..-++.|..--+ +++-..+|..-...|....+.++
T Consensus 501 ~~~sF~~~Ik~lL~r~~~qPill~s~~-k~~~p~~-~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql 578 (717)
T PF10168_consen 501 SPPSFEKHIKSLLQRSSSQPILLKSSD-KSSSPSP-QECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQL 578 (717)
T ss_pred ccchHHHHHHHHhcCCCCCCeecCCCc-cccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888889999886421 22 22 1122221 2245667777777754322 23444555555555666555433
Q ss_pred chhhhhhH---HHHHHHH-HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012816 352 DVDWLRNI---LNEISEA-IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 410 (456)
Q Consensus 352 KVDWLekK---LeEV~Ea-re~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d 410 (456)
+||..- .+.|.+. .++.+++..+.+..+...++++.+.+.+...+-.|...|.++++
T Consensus 579 --~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~ 639 (717)
T PF10168_consen 579 --KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKK 639 (717)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 333222 2222211 12333444444444444444444444444433344444444433
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=85.74 E-value=32 Score=39.36 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=25.0
Q ss_pred EEeccEEeeccchHHHHHHHhhccccc-----------ccCcccchhHHHHHHHHHHHHHHH
Q 012816 272 VSVGKYHVRASISSILQSIISRYGDIA-----------ANCNLESNSMRAYYLECLCSVVQE 322 (456)
Q Consensus 272 v~VnGFqVl~Sqv~iV~~IFeKHpDIA-----------snf~lKs~~lRs~ymn~Ll~LIet 322 (456)
..+||-.|. ..-+..+|...+=.. ..|...++.-|..|++-+.++...
T Consensus 110 ~~~n~~~~~---~~~~~~~l~~~~~~~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~~ 168 (1164)
T TIGR02169 110 YYLNGQRVR---LSEIHDFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEF 168 (1164)
T ss_pred EEECCcccc---HHHHHHHHHHcCCCcCcceEEecchHHHHHCCCHHHHHHHHHHHhCHHHH
Confidence 567776563 344566665544111 122333566666677777664433
No 16
>PRK04863 mukB cell division protein MukB; Provisional
Probab=85.65 E-value=29 Score=42.86 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=72.8
Q ss_pred EEeeccchHHHHHHHhh-cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhc--cHHHHHHHHHHHhHHHhcCcch
Q 012816 277 YHVRASISSILQSIISR-YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQM--TKAKVKEMMAVLKDVESAQIDV 353 (456)
Q Consensus 277 FqVl~Sqv~iV~~IFeK-HpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eL--S~~dL~ea~~~L~dL~~agfKV 353 (456)
.+|-.+.-...+++|.. -..+|+.| ++++.=|-..++-.+++=+.+...- ..| ++..|..+...|
T Consensus 249 ~~~tq~drdlFk~lI~~~~~~~aad~-~r~~eERR~liEEAag~r~rk~eA~-kkLe~tE~nL~rI~diL---------- 316 (1486)
T PRK04863 249 IRVTQSDRDLFKHLITESTNYVAADY-MRHANERRVHLEEALELRRELYTSR-RQLAAEQYRLVEMAREL---------- 316 (1486)
T ss_pred HHhCccHHHHHHHHhhhhhhhhHHHH-hhCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----------
Confidence 34445556666666654 35677777 6666666666666655444433332 111 222223333333
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816 354 DWLRNILNEISEAIEFSTQHQTIDAAKAN-------CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 354 DWLekKLeEV~Eare~~~~~~~~e~eKe~-------~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE 426 (456)
.=|..+|..+....+-+.++..+..+... ....++++..++++....|.+.+.++.+..+++.++.+++.+|+
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344555554444444444444333111 12233333444444444444444444444445555555555555
Q ss_pred HhhhhHHHHHHHhhhhh
Q 012816 427 LESNRLEQIIQATQSKV 443 (456)
Q Consensus 427 ~ess~L~~~v~~~kSKV 443 (456)
.+..++.+.+..++.++
T Consensus 397 eqLaelqqel~elQ~el 413 (1486)
T PRK04863 397 SQLADYQQALDVQQTRA 413 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.57 E-value=13 Score=39.56 Aligned_cols=95 Identities=13% Similarity=0.208 Sum_probs=41.6
Q ss_pred hcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHhHHHHHH
Q 012816 348 SAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALK-------EKEVAGLKESVAKTKA 420 (456)
Q Consensus 348 ~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qK-------ekev~d~~~rv~e~k~ 420 (456)
.+.-++++|+..+.++....+-+..+ ++..+......+..+++++++...+..+. +.++.+++..+.+..+
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~--i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~ 255 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKN--IEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSA 255 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 44555667777777766555322111 11111111122333344444433333333 3333333334344444
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 421 RLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 421 RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
.|..++....+++..+..++.-..
T Consensus 256 ~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 256 ALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544443333
No 18
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.32 E-value=8.8 Score=43.65 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=31.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 012816 381 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 439 (456)
Q Consensus 381 e~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~ 439 (456)
+...+.+..++.+++.++++|.+.+.+.++++++-+.+.+|+.++.+.-..|.+++..+
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555555555555555555555555555555555555555555555555544433
No 19
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=85.28 E-value=8.1 Score=36.82 Aligned_cols=134 Identities=12% Similarity=0.150 Sum_probs=70.6
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH-HHHHHHHhhhhh
Q 012816 295 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN-EISEAIEFSTQH 373 (456)
Q Consensus 295 pDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLe-EV~Eare~~~~~ 373 (456)
+++|.-+.+....+|.+|=.-++. +..-.. --+.++++|| .....+..+..+|+.+.=++...- ++....=.....
T Consensus 4 ~evA~~lGVS~~TLRrw~k~g~L~-~~R~~~-G~R~y~~~dl-~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~ 80 (175)
T PRK13182 4 PFVAKKLGVSPKTVQRWVKQLNLP-CEKNEY-GHYIFTEEDL-QLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQ 80 (175)
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCC-CCcCCC-CCEEECHHHH-HHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCC
Confidence 355666666666777776655543 111111 2477899999 789999999999997765544210 100000000111
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHhHHHHHHHHHHHHHhhhhHHHH
Q 012816 374 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL---------KESVAKTKARLSDLELESNRLEQI 435 (456)
Q Consensus 374 ~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~---------~~rv~e~k~RL~~LE~ess~L~~~ 435 (456)
.++.+.. ..++...+.+++.+.+|.+.....+|. |..++||..+|..||....++++.
T Consensus 81 ~t~~~R~----~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 81 NISSVDF----EQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred ccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111111 123333344444444444444444431 456677777777777776666553
No 20
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=84.70 E-value=10 Score=38.90 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=64.5
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816 371 TQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 448 (456)
Q Consensus 371 ~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~ 448 (456)
+++......-.++-.+....++||+.|-+.+...|++...|+.+-..+-.-|..+-.+...+.+-+..++-|+++..+
T Consensus 223 ~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 223 EKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443333333445788889999999999999999999999999999999999999999999999999999887643
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=84.47 E-value=15 Score=41.55 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=18.3
Q ss_pred HHHHHHhhcccccccCcccchhHHHHHHHHHHHH
Q 012816 286 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSV 319 (456)
Q Consensus 286 iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~L 319 (456)
+.+.||-..|+|..=+ -.+|.=|...+.=|++|
T Consensus 129 f~~~~~i~Qge~~~~l-~~~p~~R~~ii~~l~~l 161 (880)
T PRK02224 129 FVNCAYVRQGEVNKLI-NATPSDRQDMIDDLLQL 161 (880)
T ss_pred hcceeEeeccChHHHH-cCCHHHHHHHHHHHhCC
Confidence 3444555666664433 34555666666666664
No 22
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=84.37 E-value=14 Score=38.07 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=45.7
Q ss_pred hhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012816 357 RNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 410 (456)
Q Consensus 357 ekKLeEV~Ear-e~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d 410 (456)
+..|.||-|+- +-+-..++|+.+|.+.--.+..++++|+++.+.|++..++..+
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e 137 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788887764 5566788999999998888999999999999999999988865
No 23
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.30 E-value=27 Score=34.09 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=4.1
Q ss_pred cchhhhhhHHH
Q 012816 351 IDVDWLRNILN 361 (456)
Q Consensus 351 fKVDWLekKLe 361 (456)
-+|.-++..|+
T Consensus 120 rkl~~~E~~Le 130 (237)
T PF00261_consen 120 RKLKVLEQELE 130 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 24
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=84.10 E-value=51 Score=37.53 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=10.1
Q ss_pred EEeccEEeeccchHHHHHHHhhcc
Q 012816 272 VSVGKYHVRASISSILQSIISRYG 295 (456)
Q Consensus 272 v~VnGFqVl~Sqv~iV~~IFeKHp 295 (456)
..+||..+... -|..+|...|
T Consensus 112 ~~~~~~~~~~~---~~~~~l~~~~ 132 (1179)
T TIGR02168 112 YFINGQPCRLK---DIQDLFLDTG 132 (1179)
T ss_pred eeECCCcccHH---HHHHHHhccC
Confidence 44666655222 2455555543
No 25
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.87 E-value=15 Score=37.18 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 012816 308 MRAYYLECLCSV 319 (456)
Q Consensus 308 lRs~ymn~Ll~L 319 (456)
+-.-|-+-|-++
T Consensus 74 LA~kf~eeLrg~ 85 (290)
T COG4026 74 LAEKFFEELRGM 85 (290)
T ss_pred HHHHHHHHHHHh
Confidence 333344444333
No 26
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=83.84 E-value=20 Score=30.53 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=11.8
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHH
Q 012816 412 KESVAKTKARLSDLELESNRLEQII 436 (456)
Q Consensus 412 ~~rv~e~k~RL~~LE~ess~L~~~v 436 (456)
.+++.+++..|..||.....++..+
T Consensus 73 ~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 73 KAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555444444433
No 27
>PRK01156 chromosome segregation protein; Provisional
Probab=83.66 E-value=20 Score=40.73 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=9.4
Q ss_pred HHhHHHhcCcchhhhhhHHHHHH
Q 012816 342 VLKDVESAQIDVDWLRNILNEIS 364 (456)
Q Consensus 342 ~L~dL~~agfKVDWLekKLeEV~ 364 (456)
.+..++..-=++.+++.++.++.
T Consensus 320 ~l~~~e~~~~~~e~~~~~~~e~~ 342 (895)
T PRK01156 320 EINKYHAIIKKLSVLQKDYNDYI 342 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444443
No 28
>PRK02224 chromosome segregation protein; Provisional
Probab=83.56 E-value=27 Score=39.50 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=4.3
Q ss_pred hhhHHHHHHHH
Q 012816 356 LRNILNEISEA 366 (456)
Q Consensus 356 LekKLeEV~Ea 366 (456)
|+.+++.+...
T Consensus 494 ~~~~~e~l~~~ 504 (880)
T PRK02224 494 VEERLERAEDL 504 (880)
T ss_pred HHHHHHHHHHH
Confidence 33344433333
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.46 E-value=7.6 Score=41.02 Aligned_cols=57 Identities=25% Similarity=0.260 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
++++....+..++++|++-+++++.-..++.+++++ ||-+...|.+.++-|++||+.
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~et---LEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKET---LEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHH
Confidence 344444444455566666666666644444444443 345555666666666666665
No 30
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.15 E-value=44 Score=34.19 Aligned_cols=47 Identities=28% Similarity=0.377 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHH
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 433 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~ 433 (456)
+.....+|+..-.+|.+.+.++..+..+|.+..++..++..+-..++
T Consensus 218 L~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 218 LAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
No 31
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=82.69 E-value=41 Score=31.26 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcC---cchhhhhhHH
Q 012816 305 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ---IDVDWLRNIL 360 (456)
Q Consensus 305 s~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~ag---fKVDWLekKL 360 (456)
--..|++|-++.+-||+.|...- .++.. .|......+.++.... ++-++|+.-|
T Consensus 48 ~dsiK~y~~~vh~pll~~~~~~~-~~~~~-~l~~~~~~~~~vd~~~~a~i~e~~L~~el 104 (204)
T PF04740_consen 48 YDSIKNYFSEVHIPLLQGLILLL-EEYQE-ALKFIKDFQSEVDSSSNAIIDEDFLESEL 104 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHhHHHHHHHHcccccccccHHHHHHHH
Confidence 34677788887777777776554 33333 3355555555565433 8888888444
No 32
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.65 E-value=37 Score=34.21 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhhhh
Q 012816 416 AKTKARLSDLELESNR 431 (456)
Q Consensus 416 ~e~k~RL~~LE~ess~ 431 (456)
.+.+++|.+++.....
T Consensus 127 ~~l~~~~~~~e~~~~e 142 (239)
T COG1579 127 EDLKERLERLEKNLAE 142 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 33
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.26 E-value=42 Score=31.04 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 441 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kS 441 (456)
.+...+...+.+.+++...++++.+.+.++.+.+..+.++......+.+.+.+.++
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555555666777777777776666666666655544
No 34
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.83 E-value=27 Score=33.70 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=7.9
Q ss_pred HHhcCcchhhhhhHHHHHH
Q 012816 346 VESAQIDVDWLRNILNEIS 364 (456)
Q Consensus 346 L~~agfKVDWLekKLeEV~ 364 (456)
+.....++.+|+.+++++.
T Consensus 65 ~~~~~~r~~~l~~~i~~~~ 83 (302)
T PF10186_consen 65 IEELRERLERLRERIERLR 83 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.72 E-value=17 Score=40.39 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=10.4
Q ss_pred HhHHHHHHHHHHHHHhhhhHHH
Q 012816 413 ESVAKTKARLSDLELESNRLEQ 434 (456)
Q Consensus 413 ~rv~e~k~RL~~LE~ess~L~~ 434 (456)
.+.++.+.|+.+||.....|.+
T Consensus 213 ~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 213 EQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444433
No 36
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=81.62 E-value=11 Score=34.01 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=24.4
Q ss_pred HHHHHHHHHHH-HHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 012816 392 KELESQMNELA-LKEKEVAGLKESVAKTKARLSDLELES 429 (456)
Q Consensus 392 kELEe~l~eL~-qKekev~d~~~rv~e~k~RL~~LE~es 429 (456)
+.|+.++.++. ..+.+|.+.++||.+.+.++..||.+.
T Consensus 68 r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 68 RKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555554444 334566677788888888888887654
No 37
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=81.60 E-value=24 Score=38.73 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=25.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhcchhhhcc
Q 012816 301 CNLESNSMRAYYLECLCSVVQELQSTSLMQMT 332 (456)
Q Consensus 301 f~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS 332 (456)
..+.|+.+|+.+|+=|+.|--.|.+-- .+++
T Consensus 345 tlLe~~~~R~~fldeL~EL~aFL~qRl-~El~ 375 (507)
T PF05600_consen 345 TLLENPETRNQFLDELLELEAFLKQRL-YELS 375 (507)
T ss_pred hhcCCHhHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 568899999999999999977776644 5665
No 38
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.92 E-value=27 Score=34.08 Aligned_cols=7 Identities=43% Similarity=0.553 Sum_probs=2.6
Q ss_pred hhhHHHH
Q 012816 356 LRNILNE 362 (456)
Q Consensus 356 LekKLeE 362 (456)
|+.+|.+
T Consensus 97 lE~~l~e 103 (237)
T PF00261_consen 97 LEQQLKE 103 (237)
T ss_dssp CHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 39
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.80 E-value=38 Score=40.31 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=57.9
Q ss_pred EEeccEEeeccchHHHHHHHhh------------cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHH
Q 012816 272 VSVGKYHVRASISSILQSIISR------------YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEM 339 (456)
Q Consensus 272 v~VnGFqVl~Sqv~iV~~IFeK------------HpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea 339 (456)
..|||-.|..+ -+..+|.. -|+|..=...+....|. |++=..++...-.. -+.=....
T Consensus 112 Y~INg~~~~~~---dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~-iiEEaaGv~~y~~r------~~ea~~~L 181 (1163)
T COG1196 112 YYINGEKVRLK---DIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRK-LIEEAAGVSKYKER------KEEAERKL 181 (1163)
T ss_pred EEECCcEeeHH---HHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHH-HHHHHhchHHHHHH------HHHHHHHH
Confidence 66777777665 23333332 24444444455555554 66666665543221 11222333
Q ss_pred HHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhh
Q 012816 340 MAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANC 383 (456)
Q Consensus 340 ~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~ 383 (456)
..+..-|......++=|+++|+.+...++.+..+++++.++...
T Consensus 182 ~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~ 225 (1163)
T COG1196 182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELREL 225 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455566778888888888888888888887776544
No 40
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=79.91 E-value=73 Score=33.35 Aligned_cols=150 Identities=11% Similarity=0.133 Sum_probs=79.5
Q ss_pred chHHHHHHHhhccccc--ccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHH
Q 012816 283 ISSILQSIISRYGDIA--ANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL 360 (456)
Q Consensus 283 qv~iV~~IFeKHpDIA--snf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKL 360 (456)
....|+.|++=-=+|- +++++.++.||. |+..|..+..++..-| ++..|+..+..|...-|.+ ...++
T Consensus 138 d~~~v~eVI~~RN~~MHS~emkvs~~wm~~-~~~~i~nll~~f~~ip-------e~~~a~~~Ie~ll~~d~~v--~~~~~ 207 (307)
T PF15112_consen 138 DRKKVREVIKCRNEIMHSSEMKVSSQWMRD-FQMKIQNLLNEFRNIP-------EIVAAGSRIEQLLTSDWAV--HIPEE 207 (307)
T ss_pred cHHHHHHHHHHHHHhhcCcccccCHHHHHH-HHHHHHHHHHHhccCh-------HHHHHHHHHHHHHhhhhhh--cCchh
Confidence 6778888887666663 556666777775 7788888888777777 6777777777776543322 22333
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 012816 361 NEISEAIEFSTQHQTIDAAKANCVNLLESTKKEL-----------------ESQMNELALKEKEVAGLKESVAKTKARLS 423 (456)
Q Consensus 361 eEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkEL-----------------Ee~l~eL~qKekev~d~~~rv~e~k~RL~ 423 (456)
++....+-..+- ..+.....+..++.++..| -..++-+..-...=+|+++.+.+--..|.
T Consensus 208 d~~Dg~~~~~~~---~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~ 284 (307)
T PF15112_consen 208 DQRDGCESETDV---YLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQKLD 284 (307)
T ss_pred hccchhhhccch---hhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 333322211000 0011111111222222111 22223333333444455555544446666
Q ss_pred HHHHhhhhHHHHHHHhhhhhhh
Q 012816 424 DLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 424 ~LE~ess~L~~~v~~~kSKV~k 445 (456)
.|+.+..+++.-|..++++|.+
T Consensus 285 ~l~~k~~~~~~~v~~~~~~~~q 306 (307)
T PF15112_consen 285 SLQTKHQKLESDVKELKSQMPQ 306 (307)
T ss_pred HHHHHhcchhhhhhHHHhhccC
Confidence 6666666666666666666654
No 41
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.72 E-value=73 Score=35.89 Aligned_cols=68 Identities=25% Similarity=0.357 Sum_probs=29.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH---HHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 379 AKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT---KARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 379 eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~---k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
++...+..|+.++.|+++..+|+....++..+++.+|+-- -+-..++-.++.+|.+.|..++++.+..
T Consensus 288 k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 288 KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443333211 1122233344455555555555555443
No 42
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.71 E-value=70 Score=33.08 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 434 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~ 434 (456)
+.....+++.+..+|.+++.++.+...+|.+..++..++..+-..+++
T Consensus 213 l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 213 LKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555544444433
No 43
>PRK09343 prefoldin subunit beta; Provisional
Probab=79.63 E-value=30 Score=30.85 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=35.7
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 405 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 405 ekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
.....++.+|++-+..++..||.....|.+.+..+..+++...
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557779999999999999999999999999999888764
No 44
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.62 E-value=31 Score=34.86 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=14.4
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 012816 403 LKEKEVAGLKESVAKTKARLSDLELESNRLEQII 436 (456)
Q Consensus 403 qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v 436 (456)
..++++++.+++++.+..++.-|+.+..++..+|
T Consensus 90 ~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiI 123 (246)
T KOG4657|consen 90 GIEQEIKATQSELEVLRRNLQLLKEEKDDSKEII 123 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444444444444444444444443333
No 45
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.15 E-value=22 Score=42.39 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 012816 388 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 388 e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~k 440 (456)
+.+++++|...+.+++...+..++++.+.++.+++...+.+...|.+.+.+..
T Consensus 404 ~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 404 EQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444555555555555555555555554444
No 46
>PRK14148 heat shock protein GrpE; Provisional
Probab=78.93 E-value=3.8 Score=39.79 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 401 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 401 L~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
+...+.++.++++++.++++++.++..+..++.+++.-=+....+|....|+.+||
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LL 97 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELL 97 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556666678888889999999999999898888888899998888888776
No 47
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=78.79 E-value=17 Score=38.66 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=26.8
Q ss_pred hhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 012816 409 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 449 (456)
Q Consensus 409 ~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~k 449 (456)
.+++++..+++++|.+||.+...++..+..+-.++=++...
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 34555667777777777777777777666666666555433
No 48
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.24 E-value=56 Score=30.05 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 012816 414 SVAKTKARLSDLELESNRLEQIIQATQSKV 443 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v~~~kSKV 443 (456)
+...+.-+...|+..+..++..+.-+..|.
T Consensus 109 ~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 109 KAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444444555555555555554444443
No 49
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=78.12 E-value=47 Score=33.52 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 012816 416 AKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 455 (456)
Q Consensus 416 ~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~l 455 (456)
.+...+|.+++.+...+...+..++..+.+..-.+.+||.
T Consensus 242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~ 281 (423)
T TIGR01843 242 EEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGT 281 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcE
Confidence 4445556666666666666667777777777777777775
No 50
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=77.68 E-value=40 Score=28.02 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=22.1
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 413 ESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 413 ~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
.+...+.+.+..|+.....|...+.++..-+..
T Consensus 72 ~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 72 NKLKVLEQQLESLTQKQEKLSHAINFTEEALNS 104 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455666677777777777777777777666554
No 51
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.62 E-value=61 Score=30.18 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=19.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 012816 381 ANCVNLLESTKKELESQMNELALKEKEVAGLKE 413 (456)
Q Consensus 381 e~~dr~~e~~kkELEe~l~eL~qKekev~d~~~ 413 (456)
++..+.++.++.+|+.+..+|.+.+.+...++.
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666655555433
No 52
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=77.59 E-value=51 Score=36.64 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHH
Q 012816 336 VKEMMAVLKDVESAQIDVDWLRNILNEI 363 (456)
Q Consensus 336 L~ea~~~L~dL~~agfKVDWLekKLeEV 363 (456)
|.+|...|..|.- ++=|+.-|+.+
T Consensus 171 l~~Ai~~LlGl~~----~~~L~~dl~~~ 194 (650)
T TIGR03185 171 LKEAIEVLLGLDL----IDRLAGDLTNV 194 (650)
T ss_pred HHHHHHHHhCcHH----HHHHHHHHHHH
Confidence 5555555554443 34444444443
No 53
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=76.94 E-value=16 Score=36.09 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=51.0
Q ss_pred cchHHHHHHHhhcccccc-cC-cccchhH------------------------HHHHHHHHHHHHHHHhcchhhhccHHH
Q 012816 282 SISSILQSIISRYGDIAA-NC-NLESNSM------------------------RAYYLECLCSVVQELQSTSLMQMTKAK 335 (456)
Q Consensus 282 Sqv~iV~~IFeKHpDIAs-nf-~lKs~~l------------------------Rs~ymn~Ll~LIetL~kspl~eLS~~d 335 (456)
.-++.|+++++-|||+-- .| ..-.|.+ --+|+.-|+++|=+|..--+..|.+.+
T Consensus 57 ~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~ 136 (204)
T COG2178 57 EAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGS 136 (204)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346778888888888754 22 2222222 236999999999999999999999999
Q ss_pred HHHHHHHHhHHHh
Q 012816 336 VKEMMAVLKDVES 348 (456)
Q Consensus 336 L~ea~~~L~dL~~ 348 (456)
+.+|...+..|++
T Consensus 137 ~~~Ae~~~~~ME~ 149 (204)
T COG2178 137 FEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988874
No 54
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.76 E-value=16 Score=43.30 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=25.8
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhh
Q 012816 353 VDWLRNILNEISEAIEFSTQHQTIDAAKANC 383 (456)
Q Consensus 353 VDWLekKLeEV~Eare~~~~~~~~e~eKe~~ 383 (456)
|.+|+.||-++-+.++=+.+|+.++..+...
T Consensus 193 l~yieerLreLEeEKeeL~~Yqkldk~rr~l 223 (1200)
T KOG0964|consen 193 LKYIEERLRELEEEKEELEKYQKLDKERRSL 223 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHhhh
Confidence 4677889999999998889999998887654
No 55
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=76.61 E-value=41 Score=33.51 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHH
Q 012816 360 LNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 433 (456)
Q Consensus 360 LeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~ 433 (456)
-++...+++....+..++++.+...-..+.++.|+++.-.+|...++++...+.+.++....-.+|-++.++|-
T Consensus 133 ~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 133 MKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33444444443333334444444434455666777776677776666666666666666666666666666653
No 56
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=76.07 E-value=71 Score=36.37 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=4.5
Q ss_pred chhhhhhHHHH
Q 012816 352 DVDWLRNILNE 362 (456)
Q Consensus 352 KVDWLekKLeE 362 (456)
.++.|+..+.+
T Consensus 825 ~~~~l~~~~~~ 835 (1179)
T TIGR02168 825 RLESLERRIAA 835 (1179)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.93 E-value=36 Score=34.28 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816 398 MNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 448 (456)
Q Consensus 398 l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~ 448 (456)
..++.....++.-++.|+......|.+|..+..+|+.-+..++.++.+-..
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777788888888888888888888888888888888876543
No 58
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.29 E-value=19 Score=38.85 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 012816 389 STKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 439 (456)
Q Consensus 389 ~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~ 439 (456)
.+.+++...-+++.+.++++++.+..+..+...|.+.++...++++.|.++
T Consensus 49 ~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 333333333333333333333333333333333333333333333333333
No 59
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.82 E-value=39 Score=30.93 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 012816 358 NILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 437 (456)
Q Consensus 358 kKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~ 437 (456)
+.|+.|.++..-.+ ...-.++..+..+|+++.+=-.+-.++|.+++.-+..+..-+..++.....|+-.|.
T Consensus 50 kql~~vs~~l~~tK---------khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 50 KQLEQVSESLSSTK---------KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777766553211 112234445555555555555555566666666666666666666666666665555
Q ss_pred Hhhh
Q 012816 438 ATQS 441 (456)
Q Consensus 438 ~~kS 441 (456)
.+..
T Consensus 121 ~ie~ 124 (126)
T PF07889_consen 121 EIEE 124 (126)
T ss_pred HHhc
Confidence 5543
No 60
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=74.42 E-value=4.5 Score=42.26 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=21.2
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816 407 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 448 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~ 448 (456)
.|.++.+||.++.+|+.+++.....+.+.+..+..|++.+.+
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 333444445555555555544444455555556666655544
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.96 E-value=1e+02 Score=35.30 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=42.8
Q ss_pred HHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------------------H
Q 012816 346 VESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEK------------------E 407 (456)
Q Consensus 346 L~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKek------------------e 407 (456)
|....-+-|=|+.||-++.-+|+- |+....-.||.- +.-...+..+|.+|.+.....+ |
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq~-DKq~l~~LEkrL--~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e 538 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQQ-DKQSLQQLEKRL--AEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQE 538 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccch
Confidence 444445556666666666666642 222221112210 1112224666666655543322 1
Q ss_pred Hhh-hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 012816 408 VAG-LKESVAKTKARLSDLELESNRLEQIIQATQSKV 443 (456)
Q Consensus 408 v~d-~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV 443 (456)
.+| +|.|..+|...|.+|..+....+..+..+.+.+
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 344444554445555544444455555555554
No 62
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=73.38 E-value=37 Score=41.41 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHhhhhhh
Q 012816 356 LRNILNEISEAIEFSTQHQ 374 (456)
Q Consensus 356 LekKLeEV~Eare~~~~~~ 374 (456)
|++|+++|-++-+|.+.-.
T Consensus 170 LKkkfD~IF~~tky~KAld 188 (1294)
T KOG0962|consen 170 LKKKFDDIFSATKYTKALD 188 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544333
No 63
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=73.36 E-value=85 Score=38.50 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=66.0
Q ss_pred hccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhh-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012816 330 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQT-IDAAKANCVNLLESTKKELESQMNELALKEKEV 408 (456)
Q Consensus 330 eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~-~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev 408 (456)
.-|..|+..|.+.+.+.+.|.=+.+=++...++|.|+-+.+++.+. ++.+-+..++.++...+-|.+-.++++-.|+.+
T Consensus 1535 ~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~ 1614 (1758)
T KOG0994|consen 1535 SRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLA 1614 (1758)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788899999999999998888899999999998876654433 111111223344444455555555666666666
Q ss_pred hhhHHhHHHHHHHHHHHHHhhh
Q 012816 409 AGLKESVAKTKARLSDLELESN 430 (456)
Q Consensus 409 ~d~~~rv~e~k~RL~~LE~ess 430 (456)
..+.+|+.++..++..|+.+..
T Consensus 1615 ~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1615 TSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665443
No 64
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.74 E-value=64 Score=31.94 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=19.2
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 012816 374 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESV 415 (456)
Q Consensus 374 ~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv 415 (456)
+.++.+.++....++.++.++++........+.++..++..+
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~l 112 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDL 112 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334444444444555555555554444444444444443333
No 65
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=72.66 E-value=35 Score=37.25 Aligned_cols=92 Identities=16% Similarity=0.131 Sum_probs=55.8
Q ss_pred EEeccEEeeccch-HHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHH----
Q 012816 272 VSVGKYHVRASIS-SILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV---- 346 (456)
Q Consensus 272 v~VnGFqVl~Sqv-~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL---- 346 (456)
..|||-.|..+.+ .+.+.++.-||.... ..+-++..+-.+|+-+.++.+.+.+. +.+ -.++.++...|..+
T Consensus 109 ~~iNg~~v~~~~l~~l~~~li~i~gQ~~~-~~l~~~~~~~~lLD~~~~~~~~~~~~--~~~-~~~~~~~~~~L~~l~~~~ 184 (563)
T TIGR00634 109 AYLNGKPVSASSLLEFTSELLDLHGQHDQ-QLLFRPDEQRQLLDTFAGANEKVKAY--REL-YQAWLKARQQLKDRQQKE 184 (563)
T ss_pred EEECCEEccHHHHHHHhcCeEEEECchHH-HHhcCHHHHHHHHHHhcCchHHHHHH--HHH-HHHHHHHHHHHHHHHhhh
Confidence 7899999966654 333334555888864 44557777878888777743332222 222 45555555555555
Q ss_pred HhcCcchhhhhhHHHHHHHHH
Q 012816 347 ESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 347 ~~agfKVDWLekKLeEV~Ear 367 (456)
+...=+++||+-.|+||..+.
T Consensus 185 ~~~~~eld~L~~ql~ELe~~~ 205 (563)
T TIGR00634 185 QELAQRLDFLQFQLEELEEAD 205 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 334456777877777776443
No 66
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=72.58 E-value=1.2e+02 Score=36.65 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=14.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHH
Q 012816 354 DWLRNILNEISEAIEFSTQHQTID 377 (456)
Q Consensus 354 DWLekKLeEV~Eare~~~~~~~~e 377 (456)
.-|++++.+..+..+.+.+.+++.
T Consensus 238 ~~l~k~i~e~~e~~~~~~~~e~~~ 261 (1074)
T KOG0250|consen 238 KNLKKKIKEEEEKLDNLEQLEDLK 261 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777766554444433
No 67
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=72.15 E-value=1.4e+02 Score=32.90 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhc-chhhhccHHHHHHHHHHHhHHHhcCcchhhh--hhHHHHHHHHHH
Q 012816 311 YYLECLCSVVQELQS-TSLMQMTKAKVKEMMAVLKDVESAQIDVDWL--RNILNEISEAIE 368 (456)
Q Consensus 311 ~ymn~Ll~LIetL~k-spl~eLS~~dL~ea~~~L~dL~~agfKVDWL--ekKLeEV~Eare 368 (456)
.+|+-|=.|+.+|+. .| +.|.+......+|+..||.++=+ ...|..+.+...
T Consensus 212 ~~~~~iP~l~~~~~~~~P------~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~ 266 (569)
T PRK04778 212 QIMEEIPELLKELQTELP------DQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQID 266 (569)
T ss_pred HHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Confidence 345555555566654 33 67778888888899999988864 677766665553
No 68
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.03 E-value=1.3e+02 Score=36.51 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=64.0
Q ss_pred HHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHH-HhcCcchhhhhhHHHHHHHH
Q 012816 288 QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV-ESAQIDVDWLRNILNEISEA 366 (456)
Q Consensus 288 ~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL-~~agfKVDWLekKLeEV~Ea 366 (456)
+-||-.-||| .+-+..+.-|.-+++-|+++-. +..|+..+..+ +..+-+|.|++..|.-+...
T Consensus 152 ~vi~~~Qge~--~~~~~~~~~rk~~~d~if~~~~--------------y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 215 (1311)
T TIGR00606 152 NVIFCHQEDS--NWPLSEGKALKQKFDEIFSATR--------------YIKALETLRQVRQTQGQKVQEHQMELKYLKQY 215 (1311)
T ss_pred hceeeCCccc--ccccCChHHHHHHHHHHhhhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455557777 3556677777777776665432 22333333332 33455666777776666654
Q ss_pred HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 012816 367 IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 443 (456)
Q Consensus 367 re~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV 443 (456)
++.++....--.+............+.++.++.++.....++-.....+..+..+|..|+.....+...+..++..+
T Consensus 216 ~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~~i 292 (1311)
T TIGR00606 216 KEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKM 292 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44333222211111111111222223333334444444444443444444455555555544444444444444433
No 69
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.54 E-value=21 Score=36.58 Aligned_cols=36 Identities=8% Similarity=0.244 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchh
Q 012816 417 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 452 (456)
Q Consensus 417 e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~ 452 (456)
+..-.|.+++.+...+...+..+...+++...-.++
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~ 138 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVY 138 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 334455555666666666666666666665544443
No 70
>PRK10869 recombination and repair protein; Provisional
Probab=71.31 E-value=84 Score=34.64 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=12.4
Q ss_pred hhhhhhHHHHHHHHHHhhh
Q 012816 353 VDWLRNILNEISEAIEFST 371 (456)
Q Consensus 353 VDWLekKLeEV~Eare~~~ 371 (456)
|+.++.||..|...++.+.
T Consensus 298 l~~ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 298 LAELEQRLSKQISLARKHH 316 (553)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4777788887775554433
No 71
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=71.18 E-value=1.1e+02 Score=30.12 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=6.9
Q ss_pred hhccHHHHHHHHH
Q 012816 329 MQMTKAKVKEMMA 341 (456)
Q Consensus 329 ~eLS~~dL~ea~~ 341 (456)
..++..+|..+..
T Consensus 118 ~~~~~~~l~~~l~ 130 (264)
T PF06008_consen 118 DQLPSEDLQRALA 130 (264)
T ss_pred CCCCHHHHHHHHH
Confidence 3566666555433
No 72
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.17 E-value=1.2e+02 Score=36.96 Aligned_cols=28 Identities=7% Similarity=0.005 Sum_probs=18.0
Q ss_pred eccEEeeccchHHHHHHHhhcccccccC
Q 012816 274 VGKYHVRASISSILQSIISRYGDIAANC 301 (456)
Q Consensus 274 VnGFqVl~Sqv~iV~~IFeKHpDIAsnf 301 (456)
.+-|.+...++..+..++.+..+.....
T Consensus 791 ~~~~~~~~~~~~~~ee~~~~lr~~~~~l 818 (1293)
T KOG0996|consen 791 SDKARQHQEQLHELEERVRKLRERIPEL 818 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4567777777766666666666555443
No 73
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=70.72 E-value=48 Score=32.69 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh----HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 012816 386 LLESTKKELESQMNELALKEKEVAGL----KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 449 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~----~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~k 449 (456)
..+...++|+++|..++|+-..+.+- +.--++.++|=.+|..+..-|.+.+..++-.+.+|..|
T Consensus 78 ~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 78 DRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46677899999999999988877772 12225667777789989888888899999999888654
No 74
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=70.57 E-value=74 Score=33.50 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=7.4
Q ss_pred cccccCcccchh
Q 012816 296 DIAANCNLESNS 307 (456)
Q Consensus 296 DIAsnf~lKs~~ 307 (456)
|++++.+...|.
T Consensus 241 D~vAd~ra~TPt 252 (438)
T PRK00286 241 DFVADLRAPTPT 252 (438)
T ss_pred HHhhhccCCChH
Confidence 566666666653
No 75
>PRK14161 heat shock protein GrpE; Provisional
Probab=70.14 E-value=9 Score=36.64 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=35.4
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 405 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 405 ekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
+.+++++++++.++++++.++..+..++.++..--+....+|...+|+.+||
T Consensus 25 ~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LL 76 (178)
T PRK14161 25 NPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELL 76 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445556666777777777777777777777777777777777766654
No 76
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.87 E-value=1.1e+02 Score=36.78 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhh-----hHHHHHHHHHHh
Q 012816 308 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR-----NILNEISEAIEF 369 (456)
Q Consensus 308 lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLe-----kKLeEV~Eare~ 369 (456)
..+.+++.|-..|+.|-+.- +.+.+-...+..++-.+-+.-|++ .+++++.++++.
T Consensus 199 ~~~~~l~~L~~~~~~l~kdV------E~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r 259 (1072)
T KOG0979|consen 199 TKTEKLNRLEDEIDKLEKDV------ERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDR 259 (1072)
T ss_pred HhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHH
Confidence 34455566655555554433 344555555555555555555553 345555555543
No 77
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.85 E-value=51 Score=32.79 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=10.5
Q ss_pred cchhhhhhHHHHHHHHHHh
Q 012816 351 IDVDWLRNILNEISEAIEF 369 (456)
Q Consensus 351 fKVDWLekKLeEV~Eare~ 369 (456)
-|++=|++...+|....+.
T Consensus 8 ~K~~~lek~k~~i~~e~~~ 26 (230)
T PF10146_consen 8 NKTLELEKLKNEILQEVES 26 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655543
No 78
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=69.76 E-value=1.1e+02 Score=29.58 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHH
Q 012816 306 NSMRAYYLECLCSV 319 (456)
Q Consensus 306 ~~lRs~ymn~Ll~L 319 (456)
..++.||=++..+-
T Consensus 12 ~~iK~YYndIT~~N 25 (201)
T PF13851_consen 12 QEIKNYYNDITLNN 25 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 46788887776443
No 79
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=69.73 E-value=16 Score=36.46 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=24.5
Q ss_pred EEeeccchHHHHHHHhhccccccc----CcccchhHHHHHHHHH
Q 012816 277 YHVRASISSILQSIISRYGDIAAN----CNLESNSMRAYYLECL 316 (456)
Q Consensus 277 FqVl~Sqv~iV~~IFeKHpDIAsn----f~lKs~~lRs~ymn~L 316 (456)
..|.+.....|..|+-+-||.... +++.+..+...+...-
T Consensus 44 i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~~~~~~l~~~~ 87 (331)
T PRK03598 44 VNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAAPYENALMQAK 87 (331)
T ss_pred EEeecccCcEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHH
Confidence 345555566667777777776543 5667776665554433
No 80
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=69.69 E-value=21 Score=36.60 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=19.9
Q ss_pred hHHhHHHHHHHHHHHHH-------hhhhHHHHHHHhhhhhhhccccch
Q 012816 411 LKESVAKTKARLSDLEL-------ESNRLEQIIQATQSKVTKFSQKSL 451 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~-------ess~L~~~v~~~kSKV~kf~~kSl 451 (456)
+..++..+..||.+++. +..+-.+.+..++.......|-+|
T Consensus 268 l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~l 315 (344)
T PF12777_consen 268 LEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSL 315 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHH
Confidence 33444455555554443 333334455556666555555444
No 81
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=69.65 E-value=86 Score=28.27 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 012816 307 SMRAYYLECLCSVVQELQ 324 (456)
Q Consensus 307 ~lRs~ymn~Ll~LIetL~ 324 (456)
.--..-+|+|-+||..-+
T Consensus 31 ~~~~~vin~i~~Ll~~~~ 48 (151)
T PF11559_consen 31 DNDVRVINCIYDLLQQRD 48 (151)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 333445566666555443
No 82
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=69.64 E-value=1.1e+02 Score=29.57 Aligned_cols=17 Identities=53% Similarity=0.526 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012816 387 LESTKKELESQMNELAL 403 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~q 403 (456)
+++...+||.++.+|.+
T Consensus 129 ~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 129 LESEIKELEMKILELQR 145 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444544444444
No 83
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.00 E-value=54 Score=36.42 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=10.2
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 012816 402 ALKEKEVAGLKESVAKTKARLSDLELE 428 (456)
Q Consensus 402 ~qKekev~d~~~rv~e~k~RL~~LE~e 428 (456)
...++++.+++..+..+..++.+++..
T Consensus 431 ~~l~~~l~~~~~~~~~~~~~~~~~~~~ 457 (650)
T TIGR03185 431 GEAQNELFRSEAEIEELLRQLETLKEA 457 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 84
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=69.00 E-value=49 Score=35.18 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=27.8
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 012816 408 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 450 (456)
Q Consensus 408 v~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kS 450 (456)
..++++++.+++++|.+||.....++..+..+-.++=++...+
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~ 113 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHES 113 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 3445556677777777777777777776666666666554433
No 85
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=68.76 E-value=90 Score=36.14 Aligned_cols=89 Identities=24% Similarity=0.333 Sum_probs=47.9
Q ss_pred HhcCcchhhhhhHHHHHHHHHHhhhhhhh------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHhHHH
Q 012816 347 ESAQIDVDWLRNILNEISEAIEFSTQHQT------IDAAKANCVNLLESTKKELESQMNELALKE---KEVAGLKESVAK 417 (456)
Q Consensus 347 ~~agfKVDWLekKLeEV~Eare~~~~~~~------~e~eKe~~dr~~e~~kkELEe~l~eL~qKe---kev~d~~~rv~e 417 (456)
...-+..+||+.+++.+...++-+..... +..+. +.++...+++...++++.... .++.++++++.+
T Consensus 522 ~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l~~e~----~~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~ 597 (908)
T COG0419 522 ELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEEL----RQLEDRLQELKELLEELRLLRTRKEELEELRERLKE 597 (908)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445668999888888766643332211 11111 133344555565566666665 555556656666
Q ss_pred HHHHHHHHHHhhhhHHHHHHHh
Q 012816 418 TKARLSDLELESNRLEQIIQAT 439 (456)
Q Consensus 418 ~k~RL~~LE~ess~L~~~v~~~ 439 (456)
.+.++.+++...+.+...+...
T Consensus 598 ~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 598 LKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6655555555555554444333
No 86
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.73 E-value=1.4e+02 Score=30.63 Aligned_cols=89 Identities=20% Similarity=0.183 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012816 332 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL 411 (456)
Q Consensus 332 S~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~ 411 (456)
|=.||..-..+|..+-++ =+..|+...+..+.+...+..-+.+. ..+..+..++|.++..|.-...+..+
T Consensus 128 SfsD~IsRvtAi~~iv~a------Dk~ile~qk~dk~~Le~kq~~l~~~~---e~l~al~~e~e~~~~~L~~qk~e~~~- 197 (265)
T COG3883 128 SFSDLISRVTAISVIVDA------DKKILEQQKEDKKSLEEKQAALEDKL---ETLVALQNELETQLNSLNSQKAEKNA- 197 (265)
T ss_pred cHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 445666666666666543 34445554444432222222111111 12444557777776666555554444
Q ss_pred HHhHHHHHHHHHHHHHhhhhH
Q 012816 412 KESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 412 ~~rv~e~k~RL~~LE~ess~L 432 (456)
-+.+.+.++..++.+-..|
T Consensus 198 --l~~~~aa~~a~~~~e~a~l 216 (265)
T COG3883 198 --LIAALAAKEASALGEKAAL 216 (265)
T ss_pred --HHHHHHHHHHHhHHHHHHH
Confidence 3444444444444444433
No 87
>PRK11519 tyrosine kinase; Provisional
Probab=68.31 E-value=1.5e+02 Score=33.51 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=29.6
Q ss_pred ccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 012816 297 IAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 297 IAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ear 367 (456)
|...|.-.+|..=...+|.|...-- ++..+.....+..+ ++||+++|.++...-
T Consensus 230 i~Is~~~~dP~~Aa~iaN~l~~~Yi-------~~~~~~k~~~a~~a----------~~fL~~ql~~l~~~L 283 (719)
T PRK11519 230 LSLTYTGEDREQIRDILNSITRNYL-------EQNIERKSEEASKS----------LAFLAQQLPEVRSRL 283 (719)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 4556677777777777777644322 12222222333333 378888877776443
No 88
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=68.23 E-value=59 Score=34.97 Aligned_cols=109 Identities=13% Similarity=0.267 Sum_probs=56.6
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHH--HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEA--IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEK 406 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ea--re~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKek 406 (456)
.......|..+...|.++++... =|+..++.+.+. +++--..+.+.+++-+++++-+.+..-+|-+ +-
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~~---~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elH-------q~ 276 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQS---RLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELH-------QN 276 (395)
T ss_pred cccccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HH
Confidence 44455666667777777776543 455666666542 2333344666666666554333333333333 33
Q ss_pred HHhhhHHhHHHHHHHHHHH-HHhhhhHHHHHHHhhhhhhhcc
Q 012816 407 EVAGLKESVAKTKARLSDL-ELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~L-E~ess~L~~~v~~~kSKV~kf~ 447 (456)
||..++..+..|.+|+.=. .+..-+|...|...+.+|.+.+
T Consensus 277 Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 277 EIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555522 2333445555666666655544
No 89
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.14 E-value=47 Score=32.46 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=5.0
Q ss_pred chhhhhhHH
Q 012816 352 DVDWLRNIL 360 (456)
Q Consensus 352 KVDWLekKL 360 (456)
+.+|+..+.
T Consensus 76 ~~GWV~~~~ 84 (206)
T PRK10884 76 RTAWIPLKQ 84 (206)
T ss_pred CEEeEEHHH
Confidence 346766554
No 90
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.75 E-value=52 Score=37.17 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhh-hHHhHHHHHHHHHHHHHhhhh
Q 012816 392 KELESQMNELALKEKEVAG-LKESVAKTKARLSDLELESNR 431 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d-~~~rv~e~k~RL~~LE~ess~ 431 (456)
+++.+++..+..+...|.. |..+..+.+.++.++|.....
T Consensus 149 ~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~ 189 (611)
T KOG2398|consen 149 KEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLS 189 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665554 777777777777777765444
No 91
>PRK14160 heat shock protein GrpE; Provisional
Probab=67.61 E-value=24 Score=34.87 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 403 LKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 403 qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
..+.++..+++++.+++.++.++..+.....+++.-=+....+|....|+-+||
T Consensus 65 ~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LL 118 (211)
T PRK14160 65 KLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELL 118 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445556667888888999888888888888888888888888777776665
No 92
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=67.40 E-value=81 Score=27.13 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
|...-..|+..+++|.++..+++..-.+|.++.+++..||.-...|..-...+.+|+++
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444556666667777777777767777777778888888888887777778887764
No 93
>PLN02320 seryl-tRNA synthetase
Probab=67.39 E-value=44 Score=36.94 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=22.0
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 012816 411 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 450 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kS 450 (456)
++++..+++++|..||.+...++..+..+=..+=++...+
T Consensus 135 l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~ 174 (502)
T PLN02320 135 LVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPD 174 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 4445556666666666666666555555555554444333
No 94
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=67.38 E-value=53 Score=27.09 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 012816 391 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 427 (456)
Q Consensus 391 kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ 427 (456)
++++.....|=++....+..++.||++|=.||..||.
T Consensus 27 r~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 27 RAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3444444455555556666678899999999888774
No 95
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=67.26 E-value=1.6e+02 Score=30.42 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 012816 385 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 442 (456)
Q Consensus 385 r~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSK 442 (456)
..++....+|.+.-++++.....+.+++.|+.+++.+-.+|..-..-+...|..+..|
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~ 264 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGK 264 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3466677777777778888888888888899999999999999888887777766554
No 96
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=67.09 E-value=64 Score=36.62 Aligned_cols=105 Identities=16% Similarity=0.229 Sum_probs=55.8
Q ss_pred HHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH
Q 012816 339 MMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTID--AAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVA 416 (456)
Q Consensus 339 a~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e--~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~ 416 (456)
..-++.+|+.|+=++-.|+...+.+.+.-........+. ..-+.....+..+..++.....++.+.+....+ -++
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~---e~e 313 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVE---ERE 313 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 344566667666666666666665554433222222211 000000122223334444444555555554444 556
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 417 KTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 417 e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.++..+..||.+.......+.-++-|+..|
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777778888877777777777777777666
No 97
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=67.03 E-value=1.1e+02 Score=28.28 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 012816 414 SVAKTKARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v~~~k 440 (456)
++.+...+...++-....|+......-
T Consensus 102 kl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 102 KLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 444444444444444444433333333
No 98
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=66.97 E-value=28 Score=34.07 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 012816 397 QMNELALKEKEVAGLKESVAKTKARLSDLELE 428 (456)
Q Consensus 397 ~l~eL~qKekev~d~~~rv~e~k~RL~~LE~e 428 (456)
.++++-..|.++.+.+.+|+.++++|..|+..
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777777777888888888777654
No 99
>PRK14140 heat shock protein GrpE; Provisional
Probab=66.85 E-value=11 Score=36.58 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 399 NELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 399 ~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
++|.+.+.++.++++++.+++++|.++..+..++.++...=+....+|...+|+..||
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LL 94 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLL 94 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666667778888888888888888888888877777778887777776664
No 100
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=66.73 E-value=1.2e+02 Score=31.35 Aligned_cols=6 Identities=17% Similarity=0.495 Sum_probs=0.0
Q ss_pred HHHHHH
Q 012816 318 SVVQEL 323 (456)
Q Consensus 318 ~LIetL 323 (456)
.|++.|
T Consensus 9 ~l~~~l 14 (314)
T PF04111_consen 9 LLLEQL 14 (314)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 101
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.46 E-value=1.2e+02 Score=33.54 Aligned_cols=10 Identities=0% Similarity=0.332 Sum_probs=4.0
Q ss_pred ccHHHHHHHH
Q 012816 331 MTKAKVKEMM 340 (456)
Q Consensus 331 LS~~dL~ea~ 340 (456)
|+++++..+.
T Consensus 342 l~~~e~~~~~ 351 (569)
T PRK04778 342 LNESELESVR 351 (569)
T ss_pred cCchhHHHHH
Confidence 3344443333
No 102
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.22 E-value=52 Score=38.64 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=13.4
Q ss_pred cccccccCCCCCCCCCCCCcccccc
Q 012816 101 SFGRKNKASDSQPGTPLTPRAVDKV 125 (456)
Q Consensus 101 ~fgrk~k~s~~~p~~P~~~~~~~~~ 125 (456)
+||+-.= |-+||=+|..|++....
T Consensus 109 ~fg~Gsl-s~~qpL~~a~p~~m~~s 132 (1118)
T KOG1029|consen 109 GFGMGSL-SYSQPLPPAAPRRMSSS 132 (1118)
T ss_pred ccCCCCc-CcCCCCCcccccccCCC
Confidence 5666532 22355577777666553
No 103
>PRK14154 heat shock protein GrpE; Provisional
Probab=66.21 E-value=13 Score=36.65 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=34.7
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 407 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
+++++++++.++++++.++..+..++.+++.--+....+|...+|+-+||
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LL 109 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLL 109 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556667777777777777777777777777777777766666654
No 104
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=66.14 E-value=1.3e+02 Score=29.34 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.++.+.+|++..-....+.++.+.+.+.++.++..++.+++.-...|.-.+..+-..++.|
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444555555555555555555555555444444444444444
No 105
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.63 E-value=66 Score=39.11 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 012816 392 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~k 440 (456)
..|+...+.+.++.-++.+++..+..|+..+.+++.+...+.++...++
T Consensus 528 ~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~ 576 (1293)
T KOG0996|consen 528 GKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLK 576 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333444444445555555555555555555555555544444333
No 106
>PLN02678 seryl-tRNA synthetase
Probab=65.26 E-value=70 Score=34.76 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=21.3
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 410 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 410 d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
++.+++.+++++|..|+.+...++..+..+-..+=++
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555666666666666666666555555555444
No 107
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.17 E-value=1.7e+02 Score=32.49 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=7.7
Q ss_pred CCCCCCCCcchhhHH
Q 012816 66 TCIKASNPYHECGEH 80 (456)
Q Consensus 66 ~cpna~NpyHeC~~~ 80 (456)
-|..+--.|-.|.++
T Consensus 77 LcilaVP~~mt~~Dl 91 (493)
T KOG0804|consen 77 LCILAVPAYMTSHDL 91 (493)
T ss_pred EEEEeccccccHHHH
Confidence 355555555555543
No 108
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.12 E-value=57 Score=39.36 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHh
Q 012816 333 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF 369 (456)
Q Consensus 333 ~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~ 369 (456)
..++.+....+..+....--+|.|+....+....++.
T Consensus 168 ~~~rk~~~d~if~~~~y~k~~~~~~~~~k~~~~~~~~ 204 (1311)
T TIGR00606 168 GKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQE 204 (1311)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666655554443455555555555554443
No 109
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=64.86 E-value=1.2e+02 Score=34.04 Aligned_cols=53 Identities=21% Similarity=0.383 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 012816 390 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 442 (456)
Q Consensus 390 ~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSK 442 (456)
...++...+.-|.+++.+++-++.++..|.+.+.+|..+..+|..-|..++.=
T Consensus 139 ~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 139 AREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444445555666666666666666666666666666666666666555543
No 110
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=64.84 E-value=1.2e+02 Score=32.89 Aligned_cols=122 Identities=18% Similarity=0.162 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhh-----HHHHHHh
Q 012816 308 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQT-----IDAAKAN 382 (456)
Q Consensus 308 lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~-----~e~eKe~ 382 (456)
+-.+|++=++.+++.|.+.. ..|+++-|.-+...|..++.-+-... ..+|.+..+..+..+.... ++..+..
T Consensus 257 ~g~~l~~k~~~~~e~l~~~~-~~l~~e~l~~~~~~l~~l~~~~~~~~--~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~ 333 (429)
T PF10037_consen 257 WGLVLYGKALDAMELLASID-LKLCKEVLDLLQEVLEKLESESDEES--VKKLQEAVDKCEKSNSFEELLLEEVKQSKNK 333 (429)
T ss_pred HhHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHhcccccchhh--HHHHHHHHhhhhhccchHHHhHHHHHHhhhh
Confidence 34567777888888888876 66888888777787877765332211 2233333222211111111 1111111
Q ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHhh-----hHHhHHHHHHHHHHHHHhhhhH
Q 012816 383 CVNLLESTK---KELESQMNELALKEKEVAG-----LKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 383 ~dr~~e~~k---kELEe~l~eL~qKekev~d-----~~~rv~e~k~RL~~LE~ess~L 432 (456)
.+.++.... ++.++..+.+.+.+.+.-+ .++|++++..++.+++.+...+
T Consensus 334 ~E~~l~~q~~~f~~W~~~rq~~~~~q~~~l~~~~~~~~~rl~~ie~~~~~l~e~e~~l 391 (429)
T PF10037_consen 334 EEPLLPEQCERFQEWEEKRQSLLKEQSERLLTLTQLRKERLEEIEKEDKELYEQEQQL 391 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111232222 5666667777777777777 7888899999999888877766
No 111
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=64.44 E-value=1.1e+02 Score=27.42 Aligned_cols=49 Identities=14% Similarity=0.017 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 012816 311 YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 361 (456)
Q Consensus 311 ~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLe 361 (456)
.||..++.++......+...++++.-......+.+|....| .|++.++-
T Consensus 20 ~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~--~~~k~q~~ 68 (139)
T PF05615_consen 20 RLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEF--SILKSQLI 68 (139)
T ss_pred HHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 35566666666555544334445555555566666654444 67776665
No 112
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=64.41 E-value=82 Score=30.47 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=7.5
Q ss_pred HHHHHHHHhHHHhcCc
Q 012816 336 VKEMMAVLKDVESAQI 351 (456)
Q Consensus 336 L~ea~~~L~dL~~agf 351 (456)
+.++-+--.|++.-.+
T Consensus 11 f~~iK~YYndIT~~NL 26 (201)
T PF13851_consen 11 FQEIKNYYNDITLNNL 26 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444455554444
No 113
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=64.33 E-value=1.9e+02 Score=31.47 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=24.8
Q ss_pred EEeccEEeeccchHHHHHHHhhcccccccCcccch
Q 012816 272 VSVGKYHVRASISSILQSIISRYGDIAANCNLESN 306 (456)
Q Consensus 272 v~VnGFqVl~Sqv~iV~~IFeKHpDIAsnf~lKs~ 306 (456)
..+.-|++.-.....+..+..-+|+|.....-.+.
T Consensus 210 ~i~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~ 244 (582)
T PF09731_consen 210 KIVEEYKELVEEEPEVQELVSIFNDLIESINEGNL 244 (582)
T ss_pred hhhhhhhhhhhhhhhHHHHHHhccchhhhhccccc
Confidence 44556777777777778888888998766655444
No 114
>PRK14143 heat shock protein GrpE; Provisional
Probab=64.12 E-value=13 Score=37.04 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=23.3
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 413 ESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 413 ~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
.++.+++.++-++..+..++.+++.-=+....+|...+|+-+||
T Consensus 81 ~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lL 124 (238)
T PRK14143 81 QELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEIL 124 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555443
No 115
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=64.04 E-value=1.1e+02 Score=38.77 Aligned_cols=116 Identities=17% Similarity=0.163 Sum_probs=73.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcchhh--hcc---------HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHH-HHh
Q 012816 302 NLESNSMRAYYLECLCSVVQELQSTSLM--QMT---------KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEA-IEF 369 (456)
Q Consensus 302 ~lKs~~lRs~ymn~Ll~LIetL~kspl~--eLS---------~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ea-re~ 369 (456)
+..+-.+++-| ..++..|+.|+.+.-. ..+ .+++......|.-|.+-++= ||.=++-..+. .++
T Consensus 1173 k~e~~~L~qq~-~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~---LRee~~~~~~k~qEl 1248 (1822)
T KOG4674|consen 1173 KRENARLKQQV-ASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKV---LREENEANLEKIQEL 1248 (1822)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHH
Confidence 34455555555 5566667766643311 111 23455556666666666652 33333333322 255
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 012816 370 STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKAR 421 (456)
Q Consensus 370 ~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~R 421 (456)
.++...+.......+..+.+++.+|.....+|...+.++..|+.|..++...
T Consensus 1249 ~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1249 RDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777788888888888888999998999999999999998888777444
No 116
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=63.54 E-value=1.8e+02 Score=32.54 Aligned_cols=103 Identities=14% Similarity=0.247 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHH
Q 012816 306 NSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVN 385 (456)
Q Consensus 306 ~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr 385 (456)
+-++++|+.=|-.|+..|+... +....+. -.-.=|.+||+..... |+..+.
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~ad-------------SKa~~f~---~Ec~aL~~rL~~aE~e-------------k~~l~e 462 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHAD-------------SKAVHFY---AECRALQKRLESAEKE-------------KESLEE 462 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH---HHHHHHHHHHHHHHHH-------------HHHHHH
Confidence 4589999999998888886554 1111111 0112344555543322 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~k 440 (456)
.++.+.+.+....+||.--+.- -..++..|.++|..|-+..++-...|..+|
T Consensus 463 eL~~a~~~i~~LqDEL~TTr~N---YE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 463 ELKEANQNISRLQDELETTRRN---YEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333322222222222 245788888888888888887777777666
No 117
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=62.98 E-value=83 Score=36.07 Aligned_cols=18 Identities=17% Similarity=-0.031 Sum_probs=11.9
Q ss_pred hhhhhHHHHHHHHHHhhh
Q 012816 354 DWLRNILNEISEAIEFST 371 (456)
Q Consensus 354 DWLekKLeEV~Eare~~~ 371 (456)
.=||+||.|-..+|..+.
T Consensus 491 ~~LEkrL~eE~~~R~~lE 508 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLE 508 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457777777777665544
No 118
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=62.92 E-value=2.1e+02 Score=30.22 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=56.0
Q ss_pred HHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh-hhhHHHHHH
Q 012816 286 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW-LRNILNEIS 364 (456)
Q Consensus 286 iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDW-LekKLeEV~ 364 (456)
.|...=...=.-|.+-+..|..||...-.+|-..+..|..-- +-++. -...-+.++..|.-+|.| |.+-+.||.
T Consensus 201 ~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~--~~vn~---al~~Ri~et~~ak~~Le~ql~~~~~ei~ 275 (384)
T PF03148_consen 201 SWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQA--DAVNA---ALRKRIHETQEAKNELEWQLKKTLQEIA 275 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444455778888899999999888888888886443 11111 123345566666677777 555666666
Q ss_pred HHHHhhhhhhhHHHHHHh
Q 012816 365 EAIEFSTQHQTIDAAKAN 382 (456)
Q Consensus 365 Eare~~~~~~~~e~eKe~ 382 (456)
+..+.+..-..+-..|+.
T Consensus 276 ~~e~~i~~L~~ai~~k~~ 293 (384)
T PF03148_consen 276 EMEKNIEDLEKAIRDKEG 293 (384)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 665555544444444443
No 119
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=61.62 E-value=55 Score=36.65 Aligned_cols=44 Identities=36% Similarity=0.469 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 401 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 401 L~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
+..+++.+.-.++++.++..+|.+|+++..-+.-.+..+-..+.
T Consensus 129 ~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~ 172 (546)
T KOG0977|consen 129 LEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELK 172 (546)
T ss_pred HHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33344444445566666666666666666555555544444443
No 120
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=61.58 E-value=1.3e+02 Score=27.60 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=30.3
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 405 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 405 ekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.+.+.++.+|++-+.-|+..|+..-.++...+..+++++.+-
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777777788888877777777888888877654
No 121
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=61.58 E-value=2.6e+02 Score=31.64 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh--hhhHHHHHHHHH
Q 012816 310 AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW--LRNILNEISEAI 367 (456)
Q Consensus 310 s~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDW--LekKLeEV~Ear 367 (456)
..||+-+=+||-+|++.- -+.|.+.-.-..+|..+|+.|+= +.++|..+.+..
T Consensus 210 ~~~~e~IP~L~~e~~~~l-----P~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l 264 (570)
T COG4477 210 RSIMERIPSLLAELQTEL-----PGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQL 264 (570)
T ss_pred HHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHH
Confidence 478999999999997654 36677777888899999998764 445555555544
No 122
>KOG3427 consensus Polyglutamine tract-binding protein PQBP-1 [Transcription]
Probab=61.40 E-value=3.4 Score=40.84 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCChhhhHHHHHHHhhhccc
Q 012816 7 KVNPNCIKASNPYHECGERCFKRNGEANA 35 (456)
Q Consensus 7 k~~p~CpNasNpyHeCs~~C~~~~~~~~~ 35 (456)
.++-.|||+.|.||-|..||..+...|..
T Consensus 77 ~~~~~~~~k~n~~~r~~~~~~~k~~rg~~ 105 (222)
T KOG3427|consen 77 HGYKLCPNKYNIYHRCSLYCVNKFNRGPL 105 (222)
T ss_pred cccccCccccchhhhhhhhhccccccCCC
Confidence 35789999999999999999998876544
No 123
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=61.21 E-value=55 Score=36.51 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=58.6
Q ss_pred HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 012816 367 IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 443 (456)
Q Consensus 367 re~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV 443 (456)
.++.+...+-++++++.+..+...+.+|-+-.++++-.+-.+++++..|.+.-.|=.++|.+...++..+..++-=+
T Consensus 31 ~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l 107 (604)
T KOG3564|consen 31 IRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDML 107 (604)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34445566777788888888888888888888888888888888888886665666788888888888877766543
No 124
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.92 E-value=1.6e+02 Score=35.66 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhHHHhcCcchhhhhhHH
Q 012816 334 AKVKEMMAVLKDVESAQIDVDWLRNIL 360 (456)
Q Consensus 334 ~dL~ea~~~L~dL~~agfKVDWLekKL 360 (456)
.+|..+...|..|+...-|..=|+..|
T Consensus 691 ~el~~le~eL~~le~~~~kf~~l~~ql 717 (1174)
T KOG0933|consen 691 KELEALERELKSLEAQSQKFRDLKQQL 717 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444433
No 125
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.62 E-value=1.8e+02 Score=29.54 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=31.8
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHH
Q 012816 327 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 362 (456)
Q Consensus 327 pl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeE 362 (456)
|++.+-+.||.++....+-|+..-+.+|--+.|+.-
T Consensus 111 PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~ 146 (248)
T cd07619 111 PLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQ 146 (248)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Confidence 568888999999999999999999999999999863
No 126
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=60.55 E-value=1.3e+02 Score=32.10 Aligned_cols=38 Identities=8% Similarity=0.084 Sum_probs=19.5
Q ss_pred HHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhh
Q 012816 346 VESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANC 383 (456)
Q Consensus 346 L~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~ 383 (456)
|....-.|++|+.+|.-....+.+-.+.+.++....+.
T Consensus 279 L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL 316 (432)
T TIGR00237 279 LHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRK 316 (432)
T ss_pred HHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 44455556777777754444443333444444444433
No 127
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=60.53 E-value=45 Score=39.66 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=7.5
Q ss_pred CCcchhhHHHH
Q 012816 72 NPYHECGEHCF 82 (456)
Q Consensus 72 NpyHeC~~~C~ 82 (456)
.-|-+|.+.|-
T Consensus 55 ~qYF~Cd~ncG 65 (1243)
T KOG0971|consen 55 VQYFECDENCG 65 (1243)
T ss_pred eeeEecCCCcc
Confidence 45777777774
No 128
>PRK12704 phosphodiesterase; Provisional
Probab=60.11 E-value=1.4e+02 Score=33.08 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 012816 394 LESQMNELALKEKEVA 409 (456)
Q Consensus 394 LEe~l~eL~qKekev~ 409 (456)
|+...+.|.++++++.
T Consensus 98 Le~r~e~Lekke~eL~ 113 (520)
T PRK12704 98 LDRKLELLEKREEELE 113 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 129
>PRK00106 hypothetical protein; Provisional
Probab=59.79 E-value=1.1e+02 Score=34.03 Aligned_cols=52 Identities=12% Similarity=0.278 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816 394 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 448 (456)
Q Consensus 394 LEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~ 448 (456)
|+.....|.++++++.. +..++..+..+|+.....+++.+.....++++..|
T Consensus 113 LekRee~LekrE~eLe~---kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 113 LDRKDENLSSKEKTLES---KEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333444444444333 33333333344444444444444444445544433
No 130
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=59.42 E-value=67 Score=33.50 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816 399 NELALKEKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 399 ~eL~qKekev~d~~~rv~e~k~RL~~LE 426 (456)
.-|++.++||+.+++-|+-|+..|.+-.
T Consensus 117 LALKEARkEIkQLkQvieTmrssL~ekD 144 (305)
T PF15290_consen 117 LALKEARKEIKQLKQVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 3466777889999999999999998653
No 131
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=59.27 E-value=2.2e+02 Score=33.11 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=25.8
Q ss_pred HHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 012816 316 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 358 (456)
Q Consensus 316 Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLek 358 (456)
|+.-++.+++.. +.+...|.+....+..|..- |+||+.
T Consensus 284 L~~~L~e~Q~qL--e~a~~als~q~eki~~L~e~---l~aL~~ 321 (717)
T PF09730_consen 284 LLSNLQESQKQL--EHAQGALSEQQEKINRLTEQ---LDALRK 321 (717)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---HHHHhh
Confidence 555555555554 66777888887777777733 688877
No 132
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=59.18 E-value=2.5e+02 Score=33.53 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=10.1
Q ss_pred HHhhhHHhHHHHHHHHHHHHHh
Q 012816 407 EVAGLKESVAKTKARLSDLELE 428 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~e 428 (456)
.+++..++|.+.+.|+-+|++-
T Consensus 387 l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 387 LQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHHhhhhhhhc
Confidence 3333444555555554444443
No 133
>PRK14127 cell division protein GpsB; Provisional
Probab=59.13 E-value=81 Score=28.31 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDL 425 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~L 425 (456)
+...-+.++....++...+.++..+++++.++..|+..+
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333333333333344444444444444444444444433
No 134
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.03 E-value=57 Score=26.92 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 393 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 393 ELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.|+..++.|-+...+... .=...++++..+..++..|-.....+++||+..
T Consensus 4 ~Le~kle~Li~~~~~L~~---EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKS---ENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444 335566777777788888888888888888754
No 135
>PRK14139 heat shock protein GrpE; Provisional
Probab=58.91 E-value=20 Score=34.62 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 012816 414 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 455 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~l 455 (456)
++.++++++-++..+..+..+++.-=+....+|...+|+.+|
T Consensus 47 e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~L 88 (185)
T PRK14139 47 KAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESL 88 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555544444444455555444444444
No 136
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=58.81 E-value=1.6e+02 Score=27.54 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hHHhHHHHHHHHHHHHHh
Q 012816 389 STKKELESQMNELALKEKEVAG-LKESVAKTKARLSDLELE 428 (456)
Q Consensus 389 ~~kkELEe~l~eL~qKekev~d-~~~rv~e~k~RL~~LE~e 428 (456)
..+++-++=+.++.++..+|.+ .++.+..+++.-+.|+.+
T Consensus 104 ~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~~~~ 144 (145)
T PF14942_consen 104 QRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEMEKK 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3446666667888888888888 577777777776666643
No 137
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=58.74 E-value=1.6e+02 Score=27.89 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHH
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQA 438 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~ 438 (456)
+..+..+|+++-..+.....|+.-..-......+++..|+.+...|=++...
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555566666777777777777777555443
No 138
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=58.58 E-value=1.6e+02 Score=32.03 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhhHHHHHHH
Q 012816 419 KARLSDLELESNRLEQIIQA 438 (456)
Q Consensus 419 k~RL~~LE~ess~L~~~v~~ 438 (456)
.+-+..|.+...++..++..
T Consensus 298 edL~~DL~eDl~k~~etf~l 317 (424)
T PF03915_consen 298 EDLLSDLKEDLKKASETFAL 317 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555543
No 139
>PRK14158 heat shock protein GrpE; Provisional
Probab=58.30 E-value=21 Score=34.67 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=30.6
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 408 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 408 v~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
+.+.++++.++++++.++..+..++.+++.-=+..+.+|...+|+-+||
T Consensus 49 l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lL 97 (194)
T PRK14158 49 LAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEIL 97 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666777777666666666666666666666666655554
No 140
>PRK14153 heat shock protein GrpE; Provisional
Probab=58.30 E-value=17 Score=35.39 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=30.8
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 407 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
++.++++++.+++.++.++..+..++.++..--+....+|....|+.+||
T Consensus 41 ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LL 90 (194)
T PRK14153 41 ETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLL 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555666666666666666666666666666666666666665554
No 141
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=57.94 E-value=1.7e+02 Score=27.52 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh-------hhhHHHHHHHHHHhhhhhhhHHHHHHhhHH
Q 012816 313 LECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW-------LRNILNEISEAIEFSTQHQTIDAAKANCVN 385 (456)
Q Consensus 313 mn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDW-------LekKLeEV~Eare~~~~~~~~e~eKe~~dr 385 (456)
++.|++-|-.||+ ++..+..+|.+|...-.-|.. .||= |+..|..-.+...++..|++-++.....-.
T Consensus 8 iE~LInrInelQQ--aKKk~~EELgEa~~l~eaL~~---ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~ 82 (134)
T PF15233_consen 8 IEDLINRINELQQ--AKKKSSEELGEAQALWEALQR---ELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQ 82 (134)
T ss_pred HHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5789999999999 589999999998776544432 2333 334444444555566666663322211100
Q ss_pred HH--HH-HHHHHHHHHHHHHHHHHHHhh
Q 012816 386 LL--ES-TKKELESQMNELALKEKEVAG 410 (456)
Q Consensus 386 ~~--e~-~kkELEe~l~eL~qKekev~d 410 (456)
.+ +- .+-+.+.+|++|-.+-|..=+
T Consensus 83 ~~~~eck~R~~fe~qLE~lm~qHKdLwe 110 (134)
T PF15233_consen 83 TLLQECKLRLDFEEQLEDLMGQHKDLWE 110 (134)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 134555566666555554433
No 142
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=57.67 E-value=88 Score=32.54 Aligned_cols=46 Identities=11% Similarity=0.288 Sum_probs=26.2
Q ss_pred HHHHHHHhHHHhcCc--chhhhhhHHHHHHHH--HHhhhhhhhHHHHHHh
Q 012816 337 KEMMAVLKDVESAQI--DVDWLRNILNEISEA--IEFSTQHQTIDAAKAN 382 (456)
Q Consensus 337 ~ea~~~L~dL~~agf--KVDWLekKLeEV~Ea--re~~~~~~~~e~eKe~ 382 (456)
...+....+|++.-| +|.=|+.+|++|..- -+|++....|++..+.
T Consensus 26 ~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~ke 75 (291)
T KOG4466|consen 26 SNLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKE 75 (291)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 333444444444433 456677777777643 3677777776666543
No 143
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=57.38 E-value=2.8e+02 Score=30.85 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=31.0
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHH
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEA 366 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ea 366 (456)
..-++.-+..|...|..|..|--.|.=|.++|+...+.
T Consensus 237 nk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 237 NKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578889999999999998888888888888877665
No 144
>PRK14155 heat shock protein GrpE; Provisional
Probab=56.92 E-value=15 Score=35.99 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 414 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
++.+++.++-++..+..++.+++.-=+....+|...+|+.+||
T Consensus 28 e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LL 70 (208)
T PRK14155 28 EVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLL 70 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555555555565555555544
No 145
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=56.82 E-value=1.9e+02 Score=32.02 Aligned_cols=11 Identities=9% Similarity=0.392 Sum_probs=4.3
Q ss_pred HHHhhhhhhhc
Q 012816 436 IQATQSKVTKF 446 (456)
Q Consensus 436 v~~~kSKV~kf 446 (456)
|..++-.++.|
T Consensus 142 l~Pl~e~l~~f 152 (475)
T PRK10361 142 LSPLREQLDGF 152 (475)
T ss_pred HhhHHHHHHHH
Confidence 33334444433
No 146
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=56.80 E-value=1e+02 Score=27.21 Aligned_cols=55 Identities=13% Similarity=0.299 Sum_probs=31.3
Q ss_pred cccccCcccchhHHHHHHHHHHHHHH-HH-hcchhhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 296 DIAANCNLESNSMRAYYLECLCSVVQ-EL-QSTSLMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 296 DIAsnf~lKs~~lRs~ymn~Ll~LIe-tL-~kspl~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
++|.-+.+.-..+| +|-. .+||. .- ..+.-+..+.++|..+. .+..|+..||.++
T Consensus 4 e~a~~~gvs~~tlR-~Ye~--~GLl~~~~r~~~g~R~Y~~~~l~~l~-~I~~l~~~G~sl~ 60 (124)
T TIGR02051 4 ELAKAAGVNVETIR-YYER--KGLLPEPDRPEGGYRRYPEETVKRLR-FIKRAQELGFSLE 60 (124)
T ss_pred HHHHHHCcCHHHHH-HHHH--CCCCCCCccCCCCCEeECHHHHHHHH-HHHHHHHCCCCHH
Confidence 44555555555554 3422 23332 11 12334668888888774 7777999999654
No 147
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=56.49 E-value=56 Score=28.35 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=36.5
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTID-AAKANCVNLLESTKKELESQMNELALKEKE 407 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e-~eKe~~dr~~e~~kkELEe~l~eL~qKeke 407 (456)
+-.+.+|+..+ ..+..|++.||-| .||.+.... +.+.+ ...+.....++...+++++++.+|......
T Consensus 36 R~Y~~~d~~~l-~~I~~lr~~G~sl-------~eI~~~l~~---~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 104 (116)
T cd04769 36 RVYDAQHVECL-RFIKEARQLGFTL-------AELKAIFAG---HEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLAR 104 (116)
T ss_pred eeeCHHHHHHH-HHHHHHHHcCCCH-------HHHHHHHhc---cccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777654 4566678899965 444433322 11110 000111234555556666665555555555
Q ss_pred Hhhh
Q 012816 408 VAGL 411 (456)
Q Consensus 408 v~d~ 411 (456)
+...
T Consensus 105 l~~~ 108 (116)
T cd04769 105 LDAF 108 (116)
T ss_pred HHHH
Confidence 5443
No 148
>PRK14144 heat shock protein GrpE; Provisional
Probab=56.28 E-value=14 Score=36.19 Aligned_cols=52 Identities=10% Similarity=0.160 Sum_probs=37.0
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 405 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 405 ekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
++++.++++++.++++++.++..+..++.+++.-=+....+|...+|+.+||
T Consensus 51 ~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LL 102 (199)
T PRK14144 51 EEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALL 102 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566677778888888888888777777777777777777776665
No 149
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.12 E-value=1.6e+02 Score=32.39 Aligned_cols=71 Identities=18% Similarity=0.133 Sum_probs=44.0
Q ss_pred hhhHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHhH------------HHHHHHHHHHHHhhhhHHHHHH
Q 012816 373 HQTIDAAKANCVNLLEST---KKELESQMNELALKEKEVAGLKESV------------AKTKARLSDLELESNRLEQIIQ 437 (456)
Q Consensus 373 ~~~~e~eKe~~dr~~e~~---kkELEe~l~eL~qKekev~d~~~rv------------~e~k~RL~~LE~ess~L~~~v~ 437 (456)
++++.++-+.+|.+.+.- -+++|+..+||.+.+.+......++ .+.-.+|..|.++...|+++..
T Consensus 154 ~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~ 233 (446)
T KOG4438|consen 154 YQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENAN 233 (446)
T ss_pred HHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666655333222 2667777777766665544322222 2234678888888899999888
Q ss_pred Hhhhhh
Q 012816 438 ATQSKV 443 (456)
Q Consensus 438 ~~kSKV 443 (456)
++++++
T Consensus 234 ~LktqI 239 (446)
T KOG4438|consen 234 CLKTQI 239 (446)
T ss_pred HHHHHH
Confidence 888875
No 150
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.07 E-value=65 Score=29.63 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhh
Q 012816 417 KTKARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 417 e~k~RL~~LE~ess~L~~~v~~~k 440 (456)
++...+.+|+.+...|...|..++
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 151
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.76 E-value=1.3e+02 Score=25.72 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=19.9
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 411 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
+..+++.+..++.+++.....+.+.+..++.+++.
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555655555565556666665554
No 152
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.75 E-value=4e+02 Score=32.52 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=9.2
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhH
Q 012816 408 VAGLKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 408 v~d~~~rv~e~k~RL~~LE~ess~L 432 (456)
+.+++..+.++++.+...+.+..++
T Consensus 845 ~~~l~~e~~~l~~kv~~~~~~~~~~ 869 (1174)
T KOG0933|consen 845 ISSLKSELGNLEAKVDKVEKDVKKA 869 (1174)
T ss_pred HHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 3333333333333333333333333
No 153
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=55.68 E-value=85 Score=27.42 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816 382 NCVNLLESTKKELESQ--MNELALKEKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 382 ~~dr~~e~~kkELEe~--l~eL~qKekev~d~~~rv~e~k~RL~~LE 426 (456)
..++++...+++|+-+ -.++...+.++.+.+-++.++.++|..+.
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445566666666654 46666666666666666666666666554
No 154
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=55.68 E-value=1.7e+02 Score=30.07 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 012816 334 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 334 ~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ear 367 (456)
.||..+-..-++|++.|-.|-=|=.+=.++.+.|
T Consensus 117 ~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R 150 (267)
T PF10234_consen 117 QDLKAARQLASEITQRGASLYDLLGKEVELREER 150 (267)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHH
Confidence 4556666666667766665533333333444444
No 155
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=55.56 E-value=49 Score=27.76 Aligned_cols=28 Identities=14% Similarity=0.359 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 012816 415 VAKTKARLSDLELESNRLEQIIQATQSK 442 (456)
Q Consensus 415 v~e~k~RL~~LE~ess~L~~~v~~~kSK 442 (456)
++++...|.+|+....+....|..++++
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444443
No 156
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.53 E-value=99 Score=30.25 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=5.4
Q ss_pred chhhhhhHHHHHH
Q 012816 352 DVDWLRNILNEIS 364 (456)
Q Consensus 352 KVDWLekKLeEV~ 364 (456)
.|.=|++.|+++.
T Consensus 94 rlp~le~el~~l~ 106 (206)
T PRK10884 94 RVPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 157
>PHA03158 hypothetical protein; Provisional
Probab=55.52 E-value=1.1e+02 Score=30.59 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=43.6
Q ss_pred EEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcch
Q 012816 272 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS 327 (456)
Q Consensus 272 v~VnGFqVl~Sqv~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~ksp 327 (456)
|.||||+|+..-.++..+|-.--|- .+++++.=+...+.-||.--..-|++.
T Consensus 202 V~vnG~~V~y~sLpf~ERl~Rs~pP----WCv~t~~EK~~~~kQllka~kkc~~~s 253 (273)
T PHA03158 202 VNINGKHVRFDDLPFMERIKRSGPP----WCIKTAKEKAAILKQLLKAAKKCCKNS 253 (273)
T ss_pred EEecCEEEEeccCcHHHHHhccCCC----cEeecHHHhHHHHHHHHHHHHHHhcch
Confidence 8999999999999999998766553 678888888888888888777777766
No 158
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.44 E-value=2.5e+02 Score=28.89 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHH----HHHHHHHHH
Q 012816 392 KELESQMNELALKEKEVAGLKESVAK----TKARLSDLE 426 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d~~~rv~e----~k~RL~~LE 426 (456)
+++.+.-.++.+.++++++++++|.+ .+.|+-.+.
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444445555554444433 344444444
No 159
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=55.43 E-value=1.4e+02 Score=34.88 Aligned_cols=101 Identities=21% Similarity=0.314 Sum_probs=72.6
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----HHHHh
Q 012816 336 VKEMMAVLKDVESAQIDVDWLRNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALK-----EKEVA 409 (456)
Q Consensus 336 L~ea~~~L~dL~~agfKVDWLekKLeEV~Ear-e~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qK-----ekev~ 409 (456)
...|..++.--+.|--.+.=|+..|+.+...+ -+=++..-++.+-..|.+.++..+.|-|..+.+...+ ++.-.
T Consensus 9 ~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~ 88 (769)
T PF05911_consen 9 AKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKS 88 (769)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34577778888888888889999999987665 3334567788888888888888887777766554433 23333
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 012816 410 GLKESVAKTKARLSDLELESNRLEQII 436 (456)
Q Consensus 410 d~~~rv~e~k~RL~~LE~ess~L~~~v 436 (456)
++..++.+...+|..+..+...|...|
T Consensus 89 ~le~~l~e~~~~l~~~~~e~~~l~~~l 115 (769)
T PF05911_consen 89 ELEAKLAELSKRLAESAAENSALSKAL 115 (769)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 566788888888888877777776543
No 160
>KOG3427 consensus Polyglutamine tract-binding protein PQBP-1 [Transcription]
Probab=55.42 E-value=4.5 Score=40.02 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=25.5
Q ss_pred CCCcCCCCCCCCCCCcchhhHHHHhhhhcc
Q 012816 59 EGRKVDPTCIKASNPYHECGEHCFKRNGEA 88 (456)
Q Consensus 59 ~~~~~~p~cpna~NpyHeC~~~C~~~~~~~ 88 (456)
++-.++-.|||..|.||-|..||.++...|
T Consensus 74 es~~~~~~~~~k~n~~~r~~~~~~~k~~rg 103 (222)
T KOG3427|consen 74 ESYHGYKLCPNKYNIYHRCSLYCVNKFNRG 103 (222)
T ss_pred ccccccccCccccchhhhhhhhhccccccC
Confidence 334467899999999999999999988776
No 161
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=55.33 E-value=39 Score=28.97 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=11.8
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHH
Q 012816 405 EKEVAGLKESVAKTKARLSDLEL 427 (456)
Q Consensus 405 ekev~d~~~rv~e~k~RL~~LE~ 427 (456)
..++...+++|.++.+||..|+.
T Consensus 7 ~~eieK~k~Kiae~Q~rlK~Le~ 29 (83)
T PF14193_consen 7 RAEIEKTKEKIAELQARLKELEA 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555553
No 162
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=55.25 E-value=1.2e+02 Score=32.22 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHHh
Q 012816 414 SVAKTKARLSDLELE 428 (456)
Q Consensus 414 rv~e~k~RL~~LE~e 428 (456)
++.+..+.|.+++.+
T Consensus 84 ~~~~~~~~~~~~~~~ 98 (418)
T TIGR00414 84 ELTELSAALKALEAE 98 (418)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 163
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=55.04 E-value=66 Score=34.55 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=48.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 012816 304 ESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 358 (456)
Q Consensus 304 Ks~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLek 358 (456)
+.-.=+.++-+.+...++.|-...-.++|++.|.+|...+..+.+++.|+.=|..
T Consensus 133 kde~s~~y~~~~~~~~~e~lEe~~g~~iT~e~L~da~~r~N~~rea~~k~~kL~~ 187 (379)
T COG1775 133 KDEPSVKYWHNELDKFKELLEELTGNEITEEKLRDAIARYNRLREALAKLYKLAK 187 (379)
T ss_pred ccchhHhHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3333388999999999999999998999999999999999999999888877665
No 164
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=55.01 E-value=1.2e+02 Score=31.77 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=69.2
Q ss_pred hcccccccCcccchhHHH---------HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHH
Q 012816 293 RYGDIAANCNLESNSMRA---------YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEI 363 (456)
Q Consensus 293 KHpDIAsnf~lKs~~lRs---------~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV 363 (456)
|.|+|-..|...+.-+|- .+||..++-|.||+..+ +.+-.-++.--++|-|+.|--|.-|+|+
T Consensus 175 K~~elq~eft~nseTqr~l~kngetLl~alnfFIsSvnTl~nkT--------i~DTL~Ti~qyEsARiEyDayR~Dle~~ 246 (341)
T KOG3876|consen 175 KSPELQEEFTYNSETQRLLGKNGETLLGALNFFISSVNTLVNKT--------IEDTLMTIKQYESARIEYDAYRTDLEEL 246 (341)
T ss_pred cCHHHHHHhCcCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHhhhhhhhhhhhhhhHHHh
Confidence 444444444444443332 56788888899998777 3445667778889999999999999988
Q ss_pred HHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 012816 364 SEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 428 (456)
Q Consensus 364 ~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~e 428 (456)
...=+-.----.++...+ .-.+.+.+-|++..+.+-|.+=..+ .||.-|-..|.-|+.-
T Consensus 247 ~l~P~~~~t~~~le~aq~----~~q~hkekYeKlrnDvaiKmkfLeE--NrIkVmh~QL~llhnA 305 (341)
T KOG3876|consen 247 TLGPRDALTKNLLEGAQE----KFQAHKEKYEKLRNDVAIKMKFLEE--NRIKVMHKQLELLHNA 305 (341)
T ss_pred cCCccccccccccHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHH
Confidence 322111000011122221 1223334444444455555444444 5777777777666643
No 165
>PRK14162 heat shock protein GrpE; Provisional
Probab=54.90 E-value=26 Score=34.08 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=30.2
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 408 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 408 v~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
+..++.++.++++++-++..+..++.+++.-=+....+|...+|+.+||
T Consensus 48 l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LL 96 (194)
T PRK14162 48 IADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVL 96 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445556666666666666666666666666666666666665554
No 166
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=54.68 E-value=1.6e+02 Score=29.66 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=32.5
Q ss_pred chhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHH
Q 012816 326 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 362 (456)
Q Consensus 326 spl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeE 362 (456)
.|++.+.+.||.++....+-|+..-+++|-.+.|+..
T Consensus 110 ~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~ 146 (246)
T cd07618 110 DPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQ 146 (246)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHh
Confidence 3568888999999999999999999999999999864
No 167
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=54.55 E-value=51 Score=26.28 Aligned_cols=50 Identities=32% Similarity=0.493 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh--h-----HHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 012816 391 KKELESQMNELALKEKEVAG--L-----KESVAKTKARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 391 kkELEe~l~eL~qKekev~d--~-----~~rv~e~k~RL~~LE~ess~L~~~v~~~k 440 (456)
.++++....++...++.+.. + .+-|...+++|.+++.+...|...|..|+
T Consensus 10 ~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 10 EKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444444444444443 1 34567889999999999999988887764
No 168
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=54.38 E-value=1.2e+02 Score=25.01 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHhhhhHHH
Q 012816 414 SVAKTKARLSDLELESNRLEQ 434 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~ 434 (456)
.+.+.+.++..++.+...|..
T Consensus 48 ~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 48 QIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443
No 169
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=54.34 E-value=2.1e+02 Score=27.68 Aligned_cols=36 Identities=6% Similarity=0.031 Sum_probs=16.0
Q ss_pred HHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhh
Q 012816 335 KVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQH 373 (456)
Q Consensus 335 dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~ 373 (456)
+|.++-..|..+.... -=|+.++++.......+...
T Consensus 39 ~l~~ar~~lA~~~a~~---k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 39 TLVEVRTTSARTIADK---KELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443211 23455555555544433333
No 170
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.34 E-value=52 Score=30.27 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=10.1
Q ss_pred HHHhhhHHhHHHHHHHHHHHHH
Q 012816 406 KEVAGLKESVAKTKARLSDLEL 427 (456)
Q Consensus 406 kev~d~~~rv~e~k~RL~~LE~ 427 (456)
..+..++..+.++.+||..|..
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444455555555443
No 171
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=54.25 E-value=97 Score=23.70 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=29.3
Q ss_pred HHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012816 340 MAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVA 409 (456)
Q Consensus 340 ~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~ 409 (456)
...+..++.+||- |+||.+...+.+.-.. ........+....+++++++.+|.+.+..+.
T Consensus 4 L~~I~~~r~lGfs-------L~eI~~~l~l~~~~~~---~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 4 LQFIRRLRELGFS-------LEEIRELLELYDQGDP---PCADRRALLEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHHHHHHTT---------HHHHHHHHHHCCSHCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-------HHHHHHHHhccCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778889995 4566555544332111 1111123455555666666665555554443
No 172
>PRK14151 heat shock protein GrpE; Provisional
Probab=54.22 E-value=22 Score=33.89 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 012816 418 TKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 455 (456)
Q Consensus 418 ~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~l 455 (456)
+++++-++..+..++.++..-=+....+|...+|+.+|
T Consensus 39 l~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~L 76 (176)
T PRK14151 39 AKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDL 76 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 173
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=53.91 E-value=74 Score=36.32 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=10.9
Q ss_pred chhHHHHHHHHHHHHHH
Q 012816 305 SNSMRAYYLECLCSVVQ 321 (456)
Q Consensus 305 s~~lRs~ymn~Ll~LIe 321 (456)
|..+|..+|-+++-+|-
T Consensus 24 S~~~r~~w~~~~l~iil 40 (907)
T KOG2264|consen 24 SAFLRFIWFVFILYIIL 40 (907)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 55677777776555543
No 174
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=53.67 E-value=1.7e+02 Score=26.27 Aligned_cols=61 Identities=25% Similarity=0.232 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH---------HHH----HHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAK---------TKA----RLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e---------~k~----RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.++.++.++.+.+.++...+.+..+...+..+ +.. -+.+++.++..|.+.+.+-..-|+.|
T Consensus 56 ~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~F 129 (150)
T PF07200_consen 56 ELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDF 129 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34555555555555555555544443333322 233 34455666666644443333333333
No 175
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=53.52 E-value=2.6e+02 Score=28.44 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=28.9
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012816 354 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL 411 (456)
Q Consensus 354 DWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~ 411 (456)
+-|-.|=+|+.+..++.-.+ ...+..|..++.++|..=+++.|.++..+++
T Consensus 50 ~Ll~~kd~ef~~llkla~eq-------~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~a 100 (272)
T KOG4552|consen 50 KLLDSKDDEFKTLLKLAPEQ-------QKREQLMRTLEAHVEKRDEVIQQLQKNLKSA 100 (272)
T ss_pred HHHHhccHHHHHHHHHhHhH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455666666555543322 2234456666666666666666666666664
No 176
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=53.51 E-value=35 Score=31.31 Aligned_cols=8 Identities=63% Similarity=0.825 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 012816 360 LNEISEAI 367 (456)
Q Consensus 360 LeEV~Ear 367 (456)
+.||.+.+
T Consensus 5 ~kEi~~l~ 12 (121)
T PF03310_consen 5 IKEISELI 12 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444333
No 177
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=53.45 E-value=4.4 Score=43.99 Aligned_cols=124 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred eccchHHHHHHHhhcccccccCccc--------------chhHHHHHHHHHHHHHHHHhcch-----hhhccHHHHHHHH
Q 012816 280 RASISSILQSIISRYGDIAANCNLE--------------SNSMRAYYLECLCSVVQELQSTS-----LMQMTKAKVKEMM 340 (456)
Q Consensus 280 l~Sqv~iV~~IFeKHpDIAsnf~lK--------------s~~lRs~ymn~Ll~LIetL~ksp-----l~eLS~~dL~ea~ 340 (456)
..-+-.+|++|++---|+...-... ...+...=|+-|...||+||++. ++++-.+||..|.
T Consensus 390 ~~~~G~Lv~~iletkk~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~ 469 (539)
T PF10243_consen 390 EEEHGGLVQKILETKKELEKSANSEEKEEKEQSLAASKKERESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQ 469 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhcCHHHHHHHHHHHHHhhcccccccccccccchhhhccchhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 4456678999998766554433332 23455566899999999999876 4555556665555
Q ss_pred HHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 012816 341 AVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKA 420 (456)
Q Consensus 341 ~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~ 420 (456)
..|. .|-. |.+. .-+.|..++...+.. ++-...+|++.+.+|+|-+.+|..+++
T Consensus 470 ~El~---------~W~~-------e~~~---~~~~l~~e~~~t~~~-------~~pl~~~L~ele~~I~~~~~~i~~~ka 523 (539)
T PF10243_consen 470 KELE---------MWRS-------EYRQ---HAEALQEEQSITDEA-------LEPLKAQLAELEQQIKDQQDKICAVKA 523 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH---------HHHH-------HHHH---HHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 2422 1111 112222233222222 233334555667777777777777777
Q ss_pred HHHHHHHhh
Q 012816 421 RLSDLELES 429 (456)
Q Consensus 421 RL~~LE~es 429 (456)
.+-+=+...
T Consensus 524 ~Il~Ne~~i 532 (539)
T PF10243_consen 524 NILKNEEKI 532 (539)
T ss_dssp ---------
T ss_pred HHHhhHHHH
Confidence 765544433
No 178
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=53.24 E-value=91 Score=26.82 Aligned_cols=56 Identities=13% Similarity=0.385 Sum_probs=32.9
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 295 GDIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 295 pDIAsnf~lKs~~lRs~ymn~Ll~LIetL~--kspl~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
+++|.-|.+.-..+| +|-+. +||..-. .+.-+-.+.++|..+ ..+..|++.||-|+
T Consensus 4 ~e~a~~~gvs~~tlr-~ye~~--gll~~~~r~~~gyR~Y~~~~l~~l-~~I~~lr~~G~sL~ 61 (113)
T cd01109 4 KEVAEKTGLSADTLR-YYEKE--GLLPPVKRDENGIRDFTEEDLEWL-EFIKCLRNTGMSIK 61 (113)
T ss_pred HHHHHHHCcCHHHHH-HHHHC--CCCCCCCcCCCCCccCCHHHHHHH-HHHHHHHHcCCCHH
Confidence 455555555555555 44332 3332111 122367888888866 56667899999765
No 179
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.17 E-value=1.4e+02 Score=36.26 Aligned_cols=56 Identities=27% Similarity=0.375 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 442 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSK 442 (456)
++..+..|+....||..-+.++.++.-++.+++.+|.+.|.....|.+.+--+..+
T Consensus 699 ~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 699 LEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555555554444444433
No 180
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=53.12 E-value=65 Score=36.44 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=10.8
Q ss_pred hhhhhhHHHHHHHHH
Q 012816 353 VDWLRNILNEISEAI 367 (456)
Q Consensus 353 VDWLekKLeEV~Ear 367 (456)
++||+++|.++...-
T Consensus 269 ~~fL~~qL~~l~~~L 283 (726)
T PRK09841 269 LEFLQRQLPEVRSEL 283 (726)
T ss_pred HHHHHHHHHHHHHHH
Confidence 478888888776544
No 181
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.34 E-value=1.7e+02 Score=33.60 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=12.5
Q ss_pred ccCCCCCCCCCCCCCcceeeccccc
Q 012816 230 TEDGGEDIPSPADGSRNFSFSGIDL 254 (456)
Q Consensus 230 ~~~~g~~~~~~~~es~~Fs~~~i~~ 254 (456)
.+-.|+++.. .++..|+++++.+
T Consensus 260 ldldGevl~~--~S~r~~~~~eVve 282 (652)
T COG2433 260 LDLDGEVLDL--ESRRGIDRSEVVE 282 (652)
T ss_pred EecCCcEEee--eccccCCHHHHHH
Confidence 3445665544 4566666665444
No 182
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.11 E-value=2.2e+02 Score=32.31 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 392 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.+++.|..|..+...++.++...+..+...+-+++++..+ .+..+..|+-.|
T Consensus 332 ~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~---~f~~le~~~~~~ 383 (581)
T KOG0995|consen 332 EDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIED---FFKELEKKFIDL 383 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHH
Confidence 5566666666666666666666666666666666655444 333444444444
No 183
>PRK14163 heat shock protein GrpE; Provisional
Probab=52.07 E-value=28 Score=34.48 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 413 ESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 413 ~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
+++.+++.+|-++..+..++.+++.-=+..+.+|-...|+-+||
T Consensus 54 ~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LL 97 (214)
T PRK14163 54 TALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELL 97 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555555555544443
No 184
>PLN02939 transferase, transferring glycosyl groups
Probab=51.94 E-value=1.9e+02 Score=34.76 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=17.3
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 012816 336 VKEMMAVLKDVESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 336 L~ea~~~L~dL~~agfKVDWLekKLeEV~Ear 367 (456)
|.++..+|.+=+..+=+++-|+.||.|-....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (977)
T PLN02939 155 LEDLEKILTEKEALQGKINILEMRLSETDARI 186 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhh
Confidence 34444555555555556666666666544333
No 185
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=51.86 E-value=2.1e+02 Score=26.78 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 012816 416 AKTKARLSDLE 426 (456)
Q Consensus 416 ~e~k~RL~~LE 426 (456)
..+++|+.+||
T Consensus 90 q~~q~kv~eLE 100 (140)
T PF10473_consen 90 QKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 186
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=51.76 E-value=1.2e+02 Score=27.21 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=18.5
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhh
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDWLR 357 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLe 357 (456)
+..+.+|+..+.-+. .++++||-|+=++
T Consensus 37 R~Y~~~~v~~l~~I~-~lr~~GfsL~eI~ 64 (131)
T cd04786 37 RDYPPETVWVLEIIS-SAQQAGFSLDEIR 64 (131)
T ss_pred eecCHHHHHHHHHHH-HHHHcCCCHHHHH
Confidence 457777777665544 4899999654333
No 187
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.73 E-value=2.2e+02 Score=27.06 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=8.7
Q ss_pred hHHhHHHHHHHHHHHHHhhh
Q 012816 411 LKESVAKTKARLSDLELESN 430 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~ess 430 (456)
++..+.+++.+|.+++.+..
T Consensus 117 l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 117 LKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 188
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=51.69 E-value=1.7e+02 Score=33.56 Aligned_cols=12 Identities=42% Similarity=0.753 Sum_probs=5.5
Q ss_pred CCCChhhhHHHHH
Q 012816 15 ASNPYHECGERCF 27 (456)
Q Consensus 15 asNpyHeCs~~C~ 27 (456)
.-|||-+ ..+|-
T Consensus 109 ~~~P~ee-A~~~A 120 (652)
T COG2433 109 KLNPYEE-AYACA 120 (652)
T ss_pred CCChHHH-HHHHH
Confidence 4556544 33443
No 189
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=51.51 E-value=2.3e+02 Score=31.33 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 012816 398 MNELALKEKE 407 (456)
Q Consensus 398 l~eL~qKeke 407 (456)
.+.|..++++
T Consensus 96 ~e~Lekre~~ 105 (514)
T TIGR03319 96 MESLDKKEEN 105 (514)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 190
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=51.31 E-value=1.6e+02 Score=25.47 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=29.2
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 405 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 405 ekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
...+.++..|++.+..++..|+.....|.+.+..++++++..
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666777777777777777777777777777776543
No 191
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.18 E-value=1.5e+02 Score=35.78 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=36.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816 354 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 354 DWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE 426 (456)
|.=++||+-+...+++-.++..+.+.-+.+++.++...+++..-+.++.+.+-....+......++..|..+.
T Consensus 661 D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k 733 (1200)
T KOG0964|consen 661 DQKRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIK 733 (1200)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 3345555555555555555555555555555555555555555555554444444444444444444443333
No 192
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=51.18 E-value=89 Score=32.61 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=10.9
Q ss_pred HHHHHHhhhhHHHHHHHhhh
Q 012816 422 LSDLELESNRLEQIIQATQS 441 (456)
Q Consensus 422 L~~LE~ess~L~~~v~~~kS 441 (456)
|.++..|...|.|.|.-+|+
T Consensus 119 LKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444555556666655554
No 193
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=51.06 E-value=1.5e+02 Score=25.08 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 415 VAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 415 v~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
..+..++...+..+...++..+..+..++..
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554444444444443
No 194
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=50.91 E-value=1.6e+02 Score=29.43 Aligned_cols=55 Identities=24% Similarity=0.421 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHH------------HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 392 KELESQMNELALKEKE------------VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 392 kELEe~l~eL~qKeke------------v~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
-.||.+|+.|.-.+.+ +..+++++.|-.+|+=.||.+.++.+|.- .-.|.+++|.
T Consensus 31 ~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkY-LEEs~mrq~a 97 (205)
T PF12240_consen 31 TRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKY-LEESAMRQFA 97 (205)
T ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4455555555443332 34466777888888888888888888766 4567777773
No 195
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=50.44 E-value=95 Score=26.44 Aligned_cols=25 Identities=0% Similarity=0.029 Sum_probs=20.0
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
+..++.++ +....+..|+++||-|+
T Consensus 35 r~Y~~~~~-~~l~~I~~lr~~G~sL~ 59 (107)
T cd04777 35 YFFDEKCQ-DDLEFILELKGLGFSLI 59 (107)
T ss_pred cccCHHHH-HHHHHHHHHHHCCCCHH
Confidence 56778888 67788899999999653
No 196
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=50.21 E-value=1.3e+02 Score=34.39 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcchhhhccHHHHHHHHHHHh
Q 012816 313 LECLCSVVQELQSTSLMQMTKAKVKEMMAVLK 344 (456)
Q Consensus 313 mn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~ 344 (456)
=|+|+.=-|.|...++-+|=+.||..-...|.
T Consensus 304 eNLilENsqLLetKNALNiVKNDLIakVDeL~ 335 (832)
T KOG2077|consen 304 ENLILENSQLLETKNALNIVKNDLIAKVDELT 335 (832)
T ss_pred HHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 35555555555444444455555544433333
No 197
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=50.12 E-value=82 Score=35.03 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=9.5
Q ss_pred hhhhhHHHHHHHHHHhhhhh
Q 012816 354 DWLRNILNEISEAIEFSTQH 373 (456)
Q Consensus 354 DWLekKLeEV~Eare~~~~~ 373 (456)
..+..+++++.++.+++++.
T Consensus 46 ~~~~~~~~~~~~~l~~L~~~ 65 (646)
T PRK05771 46 RKLRSLLTKLSEALDKLRSY 65 (646)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555444433
No 198
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=49.99 E-value=1.2e+02 Score=32.33 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=11.6
Q ss_pred cCcchhhhhhHHHHHHHHH
Q 012816 349 AQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 349 agfKVDWLekKLeEV~Ear 367 (456)
+|+....|+.+|.++.+..
T Consensus 325 vg~~~~~l~~~~~~l~~~~ 343 (451)
T PF03961_consen 325 VGVDRPELKEKLEELEEEL 343 (451)
T ss_pred EecCcHHHHHHHHHHHHHH
Confidence 3666566777766665544
No 199
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=49.78 E-value=1.3e+02 Score=29.18 Aligned_cols=50 Identities=20% Similarity=0.334 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHH
Q 012816 384 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 433 (456)
Q Consensus 384 dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~ 433 (456)
...++....+|+.++.+|..+...+.++..+...++.+-..|+.+..+..
T Consensus 115 ~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 115 CQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666665555555556655555555554443
No 200
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=49.78 E-value=1.4e+02 Score=32.96 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 392 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.++++..+.|.+.+++..++.+.+..++..-.++.....++...|..++.+|++-
T Consensus 379 ~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 379 EELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444555555555555555555555555555666666666666666666653
No 201
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=49.65 E-value=4e+02 Score=29.51 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh--hhhHHHHHHHHH
Q 012816 312 YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW--LRNILNEISEAI 367 (456)
Q Consensus 312 ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDW--LekKLeEV~Ear 367 (456)
+|+-|=.|+.+|. .-=.+.|.+.......|+..||.+.= +...|.++.+..
T Consensus 209 ~~e~IP~l~~~l~-----~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l 261 (560)
T PF06160_consen 209 IMEDIPKLYKELQ-----KEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQL 261 (560)
T ss_pred HHHHhHHHHHHHH-----HHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Confidence 4444444455443 22246788888888999999998876 556666555444
No 202
>PRK10869 recombination and repair protein; Provisional
Probab=49.19 E-value=2e+02 Score=31.79 Aligned_cols=11 Identities=0% Similarity=0.184 Sum_probs=4.9
Q ss_pred eeeccccccCC
Q 012816 247 FSFSGIDLASG 257 (456)
Q Consensus 247 Fs~~~i~~~~~ 257 (456)
|-+.+|..+..
T Consensus 192 fql~Ei~~~~l 202 (553)
T PRK10869 192 YQLKELNEFAP 202 (553)
T ss_pred HHHHHHHhCCC
Confidence 44444444443
No 203
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=49.04 E-value=2.5e+02 Score=32.54 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=12.1
Q ss_pred ccEEeeccchHHHHHHHhhccc
Q 012816 275 GKYHVRASISSILQSIISRYGD 296 (456)
Q Consensus 275 nGFqVl~Sqv~iV~~IFeKHpD 296 (456)
+.+-+..++-.-+..++..++.
T Consensus 440 ~~~vIitTH~~el~~~~~~~~~ 461 (782)
T PRK00409 440 GAKIIATTHYKELKALMYNREG 461 (782)
T ss_pred CCEEEEECChHHHHHHHhcCCC
Confidence 4455556665555555555554
No 204
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=48.99 E-value=1.9e+02 Score=33.49 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 012816 400 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 441 (456)
Q Consensus 400 eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kS 441 (456)
+-.+...++++.+.|..-+-.--.+||.+.--|-+.|..+|+
T Consensus 77 ~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 77 ERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555556666666666666655554
No 205
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=48.93 E-value=2.2e+02 Score=26.35 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchh
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 452 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~ 452 (456)
.+.-.++++.....++.....++.+..+.+...++.|..+..+..++......++.+-.-+..-+|+
T Consensus 78 ~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll 144 (177)
T PF13870_consen 78 ILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALL 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 4555567777777888888888888888899999999999999999988888887777666555554
No 206
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=48.89 E-value=16 Score=37.66 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=33.5
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012816 370 STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 410 (456)
Q Consensus 370 ~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d 410 (456)
+|-..++++.+++-+|.-..+=+|-+|.+.+=+|++||-+|
T Consensus 31 YDNDPeMK~Vme~F~rqTsQRF~EYdErm~~kRqkcKEqcD 71 (299)
T PF02009_consen 31 YDNDPEMKSVMENFDRQTSQRFEEYDERMQEKRQKCKEQCD 71 (299)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence 45556677777888877778789999999999999999998
No 207
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.84 E-value=94 Score=32.02 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=18.6
Q ss_pred hccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 012816 330 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 361 (456)
Q Consensus 330 eLS~~dL~ea~~~L~dL~~agfKVDWLekKLe 361 (456)
+++.+.+..+..+...|= .|++.-+.
T Consensus 183 ~F~~e~v~~~S~Aa~~Lc------~WV~A~~~ 208 (344)
T PF12777_consen 183 DFNPEKVRKASKAAGSLC------KWVRAMVK 208 (344)
T ss_dssp TSSHHHHHHH-TTHHHHH------HHHHHHHH
T ss_pred CCCHHHHHHHhhcchHHH------HHHHHHHH
Confidence 678888888877777776 89887543
No 208
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=48.51 E-value=1.6e+02 Score=26.20 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhHHHh
Q 012816 334 AKVKEMMAVLKDVES 348 (456)
Q Consensus 334 ~dL~ea~~~L~dL~~ 348 (456)
.++..+..+|..|..
T Consensus 37 ~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 37 NELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHhhcc
Confidence 455666666666653
No 209
>PRK14157 heat shock protein GrpE; Provisional
Probab=47.74 E-value=30 Score=34.63 Aligned_cols=38 Identities=11% Similarity=0.018 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 012816 418 TKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 455 (456)
Q Consensus 418 ~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~l 455 (456)
++++|-++..+..+..++..-=+..+.+|-...|+.+|
T Consensus 96 ~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dL 133 (227)
T PRK14157 96 YLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTAL 133 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333
No 210
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=47.59 E-value=3.4e+02 Score=28.01 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=61.3
Q ss_pred HHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCc----chhhhhhHHHHH
Q 012816 288 QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQI----DVDWLRNILNEI 363 (456)
Q Consensus 288 ~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agf----KVDWLekKLeEV 363 (456)
++|=-..++....|....+.-=+.|-+-+|.=|..+.... ..+-|.+....+.++.-..| +-.||.+-+..+
T Consensus 7 ~~id~~~~~~i~~~G~~~~~~~a~~s~~iL~~v~~~d~~~----vg~~L~~L~~~~~~~dp~~~~~~~~~~~l~klf~k~ 82 (333)
T PF05816_consen 7 KQIDLTNPDAILSFGAEAQEKIAQFSDRILDRVRNKDSGE----VGELLNELRKEMDELDPSELKDEKKKGFLGKLFGKA 82 (333)
T ss_pred hhhCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----HhHHHHHHHHHHHhCChhhhhhhhhhhHHHHhhhhh
Confidence 3333344444455555555555666666665566553333 23344444444444433333 234555433322
Q ss_pred H-HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012816 364 S-EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 410 (456)
Q Consensus 364 ~-Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d 410 (456)
. -..+|+.+|+.+...=+.+-..++..+.+|......|.+...+..+
T Consensus 83 ~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~ 130 (333)
T PF05816_consen 83 KNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWE 130 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3336677888877776666555666566665555555554444333
No 211
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=47.55 E-value=4.8e+02 Score=32.64 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhHHH
Q 012816 333 KAKVKEMMAVLKDVE 347 (456)
Q Consensus 333 ~~dL~ea~~~L~dL~ 347 (456)
+.-+..|-..|.+|+
T Consensus 1611 E~~~~~a~q~~~eL~ 1625 (1758)
T KOG0994|consen 1611 EKLATSATQQLGELE 1625 (1758)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555554
No 212
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.50 E-value=5.6e+02 Score=31.19 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=13.1
Q ss_pred hcCcchhhhhhHHHHHHHHHHhhh
Q 012816 348 SAQIDVDWLRNILNEISEAIEFST 371 (456)
Q Consensus 348 ~agfKVDWLekKLeEV~Eare~~~ 371 (456)
..+.+|.-|+.|++|+.-..+|++
T Consensus 329 sLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666655555443
No 213
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=47.21 E-value=1.2e+02 Score=26.27 Aligned_cols=55 Identities=9% Similarity=0.294 Sum_probs=30.4
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 296 DIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 296 DIAsnf~lKs~~lRs~ymn~Ll~LIetL--~kspl~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
++|.-+.+.-..+| +|-+ .+||.-- ..+--+-.+.+++..+ ..+..|++.||-|.
T Consensus 5 eva~~~gvs~~tLR-yYe~--~GLl~p~~r~~~gyR~Y~~~~i~~l-~~I~~lr~~G~sl~ 61 (123)
T cd04770 5 ELAKAAGVSPDTIR-YYER--IGLLPPPQRSENGYRLYGEADLARL-RFIRRAQALGFSLA 61 (123)
T ss_pred HHHHHHCcCHHHHH-HHHH--CCCCCCCCCCCCCCccCCHHHHHHH-HHHHHHHHCCCCHH
Confidence 44455555555554 3433 2333211 1223467788888776 55566899999644
No 214
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=47.03 E-value=4.3e+02 Score=32.00 Aligned_cols=37 Identities=5% Similarity=0.167 Sum_probs=23.8
Q ss_pred hHHHhcCcch---hhhhhHHHHHHHHHHhhhhhhhHHHHH
Q 012816 344 KDVESAQIDV---DWLRNILNEISEAIEFSTQHQTIDAAK 380 (456)
Q Consensus 344 ~dL~~agfKV---DWLekKLeEV~Eare~~~~~~~~e~eK 380 (456)
.+|...|++- .=|++++..+....+.+.++.....+-
T Consensus 761 ~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY 800 (1201)
T PF12128_consen 761 QELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEY 800 (1201)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4677788864 455677777776666666666555443
No 215
>PRK14156 heat shock protein GrpE; Provisional
Probab=46.93 E-value=83 Score=30.29 Aligned_cols=49 Identities=12% Similarity=0.238 Sum_probs=32.6
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 408 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 408 v~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
+..+++++.++++++.++..+..++.++..-=+....+|....|+-+||
T Consensus 36 l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LL 84 (177)
T PRK14156 36 LELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAIL 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556667777777777777777777766666666666666665554
No 216
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=46.92 E-value=3.8e+02 Score=34.44 Aligned_cols=158 Identities=18% Similarity=0.237 Sum_probs=99.0
Q ss_pred EEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcch-hhhccHHHHHHHHHHHhHHHhcC
Q 012816 272 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS-LMQMTKAKVKEMMAVLKDVESAQ 350 (456)
Q Consensus 272 v~VnGFqVl~Sqv~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~ksp-l~eLS~~dL~ea~~~L~dL~~ag 350 (456)
|++++|.+++....-...+-+.|++.-+++- +..+-|--=++.+-+.|.... -..+...+|..+.+.|.-+.+-.
T Consensus 21 V~~d~~~~l~~k~~~~~~lk~e~~k~~v~~e----q~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~ 96 (1822)
T KOG4674|consen 21 VDVDVFKKLPKKSKDFESLKDEDGKTEVNHE----QQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSER 96 (1822)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 8899999999888888888888887766553 333444455666777766554 23566788999999999999988
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHhHHHHHHHHH
Q 012816 351 IDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG-------LKESVAKTKARLS 423 (456)
Q Consensus 351 fKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d-------~~~rv~e~k~RL~ 423 (456)
-.|-|.-.+++-+.....-.. ..+..+|......++..++||+....+....-.+++. +..|..++..-.+
T Consensus 97 ~~l~~~~~~~~~~~~~l~~~~--se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~v 174 (1822)
T KOG4674|consen 97 SNLSWEIDALKLENSQLRRAK--SELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDV 174 (1822)
T ss_pred HHHHHHHHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889998777776554432111 2222344444445555566777665555444444444 4444444444444
Q ss_pred HHHHhhhhHHHH
Q 012816 424 DLELESNRLEQI 435 (456)
Q Consensus 424 ~LE~ess~L~~~ 435 (456)
.++.+..+|.|-
T Consensus 175 s~q~k~~rl~QE 186 (1822)
T KOG4674|consen 175 SSQLKEERLEQE 186 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 455555555443
No 217
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=46.87 E-value=3e+02 Score=27.21 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHH----HHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhh
Q 012816 311 YYLECLCSVVQELQSTSLMQMTKAKV----KEMMAVLKDVESAQIDVDWLRNILNEISEAIEFS 370 (456)
Q Consensus 311 ~ymn~Ll~LIetL~kspl~eLS~~dL----~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~ 370 (456)
.|=.++..+|++.++. ..++...+ .+-..++.||.++---+.+|..|.+-..+..+-+
T Consensus 48 e~Ek~i~~~i~e~~~~--~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~ 109 (207)
T PF05010_consen 48 EYEKTIAQMIEEKQKQ--KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGY 109 (207)
T ss_pred HHHHHHHHHHHHHHhh--HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4666777778777655 35555544 3445677778877777889999998777665443
No 218
>PRK14127 cell division protein GpsB; Provisional
Probab=46.74 E-value=1.1e+02 Score=27.37 Aligned_cols=12 Identities=42% Similarity=0.457 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHh
Q 012816 417 KTKARLSDLELE 428 (456)
Q Consensus 417 e~k~RL~~LE~e 428 (456)
++-.||++||..
T Consensus 89 DiLKRls~LEk~ 100 (109)
T PRK14127 89 DILKRLSNLEKH 100 (109)
T ss_pred HHHHHHHHHHHH
Confidence 345666666644
No 219
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=46.56 E-value=1.8e+02 Score=32.79 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=21.9
Q ss_pred hccHHHHHHHHHHHhHHHhcCcchhh--hhhHHHH
Q 012816 330 QMTKAKVKEMMAVLKDVESAQIDVDW--LRNILNE 362 (456)
Q Consensus 330 eLS~~dL~ea~~~L~dL~~agfKVDW--LekKLeE 362 (456)
.-|+.+|..++.+|. .||+-|| |++||.-
T Consensus 187 s~~EkEvE~~F~~ls----L~f~~D~~TLe~R~~~ 217 (538)
T PF05781_consen 187 SASEKEVEAEFLRLS----LGFKCDRFTLEKRLKL 217 (538)
T ss_pred CCcHHHHHHHHHHHH----HHhhhhhhhHHHHHHH
Confidence 338888888888885 7999999 4666653
No 220
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=46.40 E-value=2.7e+02 Score=33.35 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=13.6
Q ss_pred HHHhcCcchhhhhhHHHHHHHHH
Q 012816 345 DVESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 345 dL~~agfKVDWLekKLeEV~Ear 367 (456)
+|.++..|+.=|-.||+|+-.++
T Consensus 338 ~LlEarrk~egfddk~~eLEKkr 360 (1265)
T KOG0976|consen 338 ALLEARRKAEGFDDKLNELEKKR 360 (1265)
T ss_pred HHHHHHHhhcchhHHHHHHHHHH
Confidence 45556666666666666654444
No 221
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=46.20 E-value=3.8e+02 Score=28.30 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=30.0
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 410 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 410 d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
....+-..+.+||.+|+-+..=|.|-+.++..|++.
T Consensus 211 k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 211 KYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466778999999999999999999999999863
No 222
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=46.08 E-value=3.3e+02 Score=35.17 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 392 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
.+++.....+.+.++.+.++..+|.++.+-|......++++++...++..-++
T Consensus 1083 ~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1083 SKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455666667777777777777666665555555555555555544443
No 223
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=46.02 E-value=1.5e+02 Score=27.14 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=30.9
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHH-h-cchhhhccHHHHHHHHHHHhHHHhcCcchhh
Q 012816 295 GDIAANCNLESNSMRAYYLECLCSVVQEL-Q-STSLMQMTKAKVKEMMAVLKDVESAQIDVDW 355 (456)
Q Consensus 295 pDIAsnf~lKs~~lRs~ymn~Ll~LIetL-~-kspl~eLS~~dL~ea~~~L~dL~~agfKVDW 355 (456)
+++|.-+.+.-..+| +|-. .+||.-- . .+--+..+.++|..+.- +..++.+||-|+=
T Consensus 11 gevAk~~Gvs~~TLR-yYE~--~GLl~p~~r~~~gyR~Y~~~~l~rl~~-I~~lr~~G~sL~e 69 (144)
T PRK13752 11 GVFAKAAGVNVETIR-FYQR--KGLLPEPDKPYGSIRRYGEADVTRVRF-VKSAQRLGFSLDE 69 (144)
T ss_pred HHHHHHHCcCHHHHH-HHHH--CCCCCCCccCCCCCeecCHHHHHHHHH-HHHHHHcCCCHHH
Confidence 344444444444444 3433 2444311 1 12246788888877654 5558899996543
No 224
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=46.00 E-value=1.5e+02 Score=28.05 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHhcCcchhhhhhHHHHHHHHH
Q 012816 346 VESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 346 L~~agfKVDWLekKLeEV~Ear 367 (456)
|..+-=.=+.|-.+|.......
T Consensus 83 Lael~r~~~el~~~L~~~~~~l 104 (194)
T PF08614_consen 83 LAELYRSKGELAQQLVELNDEL 104 (194)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 3333333355556665554444
No 225
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=45.99 E-value=2.7e+02 Score=31.47 Aligned_cols=16 Identities=13% Similarity=-0.064 Sum_probs=8.9
Q ss_pred cccccccCCCCCCCCc
Q 012816 144 KKKVESENGKSFSRPE 159 (456)
Q Consensus 144 ~k~~~~~~~~~~~~~~ 159 (456)
.++-+-++.-+|++..
T Consensus 36 ~~DWIGiFKVGw~s~r 51 (546)
T PF07888_consen 36 SKDWIGIFKVGWSSTR 51 (546)
T ss_pred CCCeeEEeecCCCchh
Confidence 4555555555665554
No 226
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.91 E-value=3.8e+02 Score=30.93 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=16.8
Q ss_pred HhHHHHHHHHHHHHHh-hhhHHHH
Q 012816 413 ESVAKTKARLSDLELE-SNRLEQI 435 (456)
Q Consensus 413 ~rv~e~k~RL~~LE~e-ss~L~~~ 435 (456)
+++.+++++|.+|+.+ +.+|++.
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv 183 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKV 183 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999955 4455443
No 227
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=45.46 E-value=1.6e+02 Score=30.31 Aligned_cols=38 Identities=11% Similarity=0.308 Sum_probs=33.1
Q ss_pred cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhcc
Q 012816 294 YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 332 (456)
Q Consensus 294 HpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS 332 (456)
-|+.-.+|++-+-.++.+=...+..+|+.+|-+. +.|.
T Consensus 56 ~~~~~k~C~iG~g~~k~mtn~t~mk~IeeVq~S~-~~Lr 93 (264)
T PF07246_consen 56 MPGFNKKCRIGSGDLKEMTNKTMMKIIEEVQLSI-SNLR 93 (264)
T ss_pred CCccccCcccCCcchhhcchhhHHHHHHHHhccc-ccce
Confidence 5666689999999999999999999999999877 6665
No 228
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=45.43 E-value=46 Score=35.39 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=27.7
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012816 370 STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 410 (456)
Q Consensus 370 ~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d 410 (456)
+|-.-+++...++-++.--.+=+|.+|.|.+=+|++||-+|
T Consensus 54 YDNDPeMK~Vm~nF~rqTsQRF~EYdERM~~kRqKcKeqCD 94 (353)
T TIGR01477 54 YDNDPEMKSVMEQFDRQTSQRFEEYDERMQEKRQKCKEQCD 94 (353)
T ss_pred CCCcHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhhHHhhc
Confidence 34444555555666655556667788888888888888877
No 229
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=45.30 E-value=1.1e+02 Score=27.09 Aligned_cols=26 Identities=8% Similarity=0.157 Sum_probs=18.3
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 328 LMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 328 l~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
-+..+.++|..+.-+ ..|..+||-|+
T Consensus 36 ~R~Y~~~~l~~l~~I-~~lr~~G~sL~ 61 (126)
T cd04785 36 YRLYGAAHVERLRFI-RRARDLGFSLE 61 (126)
T ss_pred ccccCHHHHHHHHHH-HHHHHCCCCHH
Confidence 366788888766554 45899999654
No 230
>PRK14141 heat shock protein GrpE; Provisional
Probab=45.17 E-value=35 Score=33.62 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=12.4
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhccccchhh
Q 012816 421 RLSDLELESNRLEQIIQATQSKVTKFSQKSLAD 453 (456)
Q Consensus 421 RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D 453 (456)
++.++..+..++.++..-=+....+|....|+.
T Consensus 53 ~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~ 85 (209)
T PRK14141 53 RMLRLAAEMENLRKRTQRDVADARAYGIAGFAR 85 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 231
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.16 E-value=2.7e+02 Score=28.67 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=55.2
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHh----------------hhhhhhHHHHHHhhHHHHHHH
Q 012816 327 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF----------------STQHQTIDAAKANCVNLLEST 390 (456)
Q Consensus 327 pl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~----------------~~~~~~~e~eKe~~dr~~e~~ 390 (456)
||..|.+.||.++.-..+-|...-.+.|-.++|+.....--.. ..+...++++-+.....++.-
T Consensus 111 PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~ 190 (257)
T cd07620 111 PLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQC 190 (257)
T ss_pred HHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 5789999999999999999988888778888888643211000 001112334444444566666
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 012816 391 KKELESQMNELALKEKEVAG 410 (456)
Q Consensus 391 kkELEe~l~eL~qKekev~d 410 (456)
+..++..|-.|..+|-+.+.
T Consensus 191 kd~~~a~Mynfl~kE~e~a~ 210 (257)
T cd07620 191 KDQYSADLYHFATKEDSYAN 210 (257)
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 77777777777777777666
No 232
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=44.99 E-value=3.3e+02 Score=27.20 Aligned_cols=110 Identities=18% Similarity=0.306 Sum_probs=69.4
Q ss_pred cHHHHHHHHHHHhHHHhcCcchhh----hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012816 332 TKAKVKEMMAVLKDVESAQIDVDW----LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE 407 (456)
Q Consensus 332 S~~dL~ea~~~L~dL~~agfKVDW----LekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKeke 407 (456)
..+.|..|...|.+++.+.-.=+- |+.+....-+..+. +-.+++++| ++-+...++.++-...|+-++-+
T Consensus 23 aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~--~e~qLkEAk----~iaE~adrK~eEVarkL~iiE~d 96 (205)
T KOG1003|consen 23 AQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEA--QEAQLKEAK----HIAEKADRKYEEVARKLVIIEGE 96 (205)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhH
Confidence 445566666666666655432221 22222222222222 113333343 45556667777777778888877
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 408 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 408 v~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
.-...+|...-..++.+|+.+..-+..++.++..+.+++.
T Consensus 97 LE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~ 136 (205)
T KOG1003|consen 97 LERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLE 136 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh
Confidence 7777888888888999999999888888888888877753
No 233
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=44.94 E-value=3.1e+02 Score=27.47 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=26.1
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 012816 327 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 361 (456)
Q Consensus 327 pl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLe 361 (456)
|++.+=+.||.++..+.+.|+..-+.+|--+.|+.
T Consensus 123 PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~ 157 (229)
T cd07616 123 PLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLK 157 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667788888888888888888777777774
No 234
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=44.70 E-value=2.6e+02 Score=34.63 Aligned_cols=111 Identities=23% Similarity=0.281 Sum_probs=57.7
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHH----HHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 012816 336 VKEMMAVLKDVESAQIDVDWLRNILNE----ISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQ---MNELALKEKEV 408 (456)
Q Consensus 336 L~ea~~~L~dL~~agfKVDWLekKLeE----V~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~---l~eL~qKekev 408 (456)
+..+...+.|++..+-+.+=|...|.- +.--.++.+.......+.......++.+.++...+ +..|...-.+.
T Consensus 787 ~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~ 866 (1294)
T KOG0962|consen 787 VTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNEL 866 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444433 22112222222222222223334444444333333 23344444455
Q ss_pred hhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 409 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 409 ~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
++...++..--+++.+|+..-.+|..-+..+.|||...
T Consensus 867 k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~ 904 (1294)
T KOG0962|consen 867 KEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKEL 904 (1294)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 55666667777778888888888888888888887654
No 235
>PF00042 Globin: Globin plant globin signature erythrocruorin family signature alpha hemoglobin signature myoglobin signature thalassemia.; InterPro: IPR000971 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry covers most of the globin family of proteins, but it omits some bacterial globins and the protoglobins. More information about these proteins can be found at Protein of the Month: Haemoglobin [].; GO: 0005506 iron ion binding, 0020037 heme binding; PDB: 2WTH_A 2WTG_A 3A59_G 3FS4_C 3CY5_C 3D1A_B 2RI4_J 3EU1_B 1JEB_A 2Z6N_B ....
Probab=44.63 E-value=61 Score=26.50 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=30.4
Q ss_pred hHHHHHHHhhcccccccCc-c----------cchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCN-L----------ESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~-l----------Ks~~lRs---~ymn~Ll~LIetL~ 324 (456)
..+..++|++||++..-|. + .|+.++. .+|++|-.+|..|.
T Consensus 21 ~~~f~~lF~~~P~~~~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~l~ 75 (110)
T PF00042_consen 21 SEFFQRLFEEYPDYKKLFPKFKDIVPLEELKNNPEFKAHAQRVMEALDEAVDNLD 75 (110)
T ss_dssp HHHHHHHHHHSGGGGGGGTTGTTTSSHHHHTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCHHHHhhcccccccchHHHHhccchHHHHHHHHHHHHHHHHHccC
Confidence 4678899999999999998 4 3455665 56667777777663
No 236
>PRK14145 heat shock protein GrpE; Provisional
Probab=44.53 E-value=47 Score=32.48 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=31.7
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 408 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 408 v~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
+.++++++.+++.++-++..+..+..+++.-=+....+|....|+-+||
T Consensus 54 l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LL 102 (196)
T PRK14145 54 LQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELL 102 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666667777777777777777766666777776666665554
No 237
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=44.49 E-value=1.1e+02 Score=27.10 Aligned_cols=55 Identities=11% Similarity=0.274 Sum_probs=30.6
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 296 DIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 296 DIAsnf~lKs~~lRs~ymn~Ll~LIetL--~kspl~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
++|.-+.+.-..+| +|-.. +|+..- ..+--+..+.+||. ....+..|+++||-|.
T Consensus 5 e~a~~~gvs~~tlR-yYe~~--GLl~~~~r~~~g~R~Y~~~~~~-~l~~I~~lr~~G~sL~ 61 (127)
T cd01108 5 EAAKLTGLSAKMIR-YYEEI--GLIPPPSRSDNGYRVYNQRDIE-ELRFIRRARDLGFSLE 61 (127)
T ss_pred HHHHHHCcCHHHHH-HHHHC--CCCCCCCcCCCCceecCHHHHH-HHHHHHHHHHcCCCHH
Confidence 44444455444555 44333 333211 12234678888888 4556677889999654
No 238
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.31 E-value=2.4e+02 Score=31.25 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816 415 VAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 448 (456)
Q Consensus 415 v~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~ 448 (456)
++-+..|+.+|+.+.++|-..+.++||=.++..+
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklae 332 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAE 332 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455678888888888888888888887777644
No 239
>PLN02320 seryl-tRNA synthetase
Probab=44.08 E-value=1.5e+02 Score=32.95 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHHH
Q 012816 414 SVAKTKARLSDLEL 427 (456)
Q Consensus 414 rv~e~k~RL~~LE~ 427 (456)
++.++.+.|.+++.
T Consensus 145 ~i~~le~~~~~~~~ 158 (502)
T PLN02320 145 GLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 240
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=43.88 E-value=3.5e+02 Score=27.19 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=34.6
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 012816 305 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 368 (456)
Q Consensus 305 s~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare 368 (456)
-......|.++|+..|++|++.- ++.. ..+..++. .++.+||..|=+-+..+..
T Consensus 104 l~~q~~~y~~vL~~cl~~L~~li-~~~r-------l~~q~~~d--~~~~~~L~~kceam~lKLr 157 (238)
T PF14735_consen 104 LERQFATYYQVLLQCLQLLQKLI-EKHR-------LGTQAELD--KIKAEYLEAKCEAMILKLR 157 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHh-------hcchHHHh--HHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999998754 2221 12223333 3445899888887776664
No 241
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.34 E-value=7e+02 Score=30.48 Aligned_cols=71 Identities=13% Similarity=-0.015 Sum_probs=37.7
Q ss_pred EEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 012816 272 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 347 (456)
Q Consensus 272 v~VnGFqVl~Sqv~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~ 347 (456)
..|||+.|..|.++.+-.=|..-=|=---|.++-..-==+=| +=|+.|-.+- ..+..++|-..+..|.+|.
T Consensus 117 y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L----~pi~LL~eTe-kAig~~~ll~~h~eL~~lr 187 (1072)
T KOG0979|consen 117 YFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARL----SPIELLVETE-KAIGAEELLQYHIELMDLR 187 (1072)
T ss_pred eeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcC----ChHHHHHHHH-HhcCchhhHHHHHHHHHHH
Confidence 889999999988777666665544433334443222111111 1222222222 5555666666666665554
No 242
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.03 E-value=2.1e+02 Score=27.49 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhh-hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 392 KELESQMNELALKEKEVAG-LKESVAKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d-~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
++|++++++|....+...+ .-++|..++..+..+.....+.--+|-.+++=+.
T Consensus 113 ~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 113 EELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444444444444443333 2567788888887777777666555555554433
No 243
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.00 E-value=3.1e+02 Score=29.65 Aligned_cols=73 Identities=23% Similarity=0.330 Sum_probs=39.6
Q ss_pred HHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHhHH
Q 012816 338 EMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELA-LKEKEVAGLKESVA 416 (456)
Q Consensus 338 ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~-qKekev~d~~~rv~ 416 (456)
+.--.+..|.+..|+..=|+..|++..|.-. ..|..+|++|-.+-+.+. |-.....|+.+-++
T Consensus 245 e~~~~~~~LqEEr~R~erLEeqlNd~~elHq----------------~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~E 308 (395)
T PF10267_consen 245 EYQFILEALQEERYRYERLEEQLNDLTELHQ----------------NEIYNLKQELASMEEKMAYQSYERARDIWEVME 308 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Confidence 3334444455555666656666665444431 235555655544433333 34455556666777
Q ss_pred HHHHHHHHHH
Q 012816 417 KTKARLSDLE 426 (456)
Q Consensus 417 e~k~RL~~LE 426 (456)
-|..|+..||
T Consensus 309 s~qtRisklE 318 (395)
T PF10267_consen 309 SCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHH
Confidence 7777777777
No 244
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=42.83 E-value=2.8e+02 Score=27.68 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 012816 384 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKAR 421 (456)
Q Consensus 384 dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~R 421 (456)
+..+..++.+.+...+...++..++.-++..|.+++..
T Consensus 66 E~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 66 ENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555455555554443
No 245
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.82 E-value=2.7e+02 Score=30.91 Aligned_cols=14 Identities=7% Similarity=-0.102 Sum_probs=7.5
Q ss_pred eeccchHHHHHHHh
Q 012816 279 VRASISSILQSIIS 292 (456)
Q Consensus 279 Vl~Sqv~iV~~IFe 292 (456)
.+-||+++=+..++
T Consensus 325 ll~sqleSqr~y~e 338 (493)
T KOG0804|consen 325 LLTSQLESQRKYYE 338 (493)
T ss_pred hhhhhhhHHHHHHH
Confidence 55555555555444
No 246
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=42.81 E-value=6e+02 Score=31.01 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=59.9
Q ss_pred cccccccCccc---c-hhHHHHHHHHHHHHHHHHhcch-------hhhccHHHHH----HHHHHHhHHHhcCcchhhhhh
Q 012816 294 YGDIAANCNLE---S-NSMRAYYLECLCSVVQELQSTS-------LMQMTKAKVK----EMMAVLKDVESAQIDVDWLRN 358 (456)
Q Consensus 294 HpDIAsnf~lK---s-~~lRs~ymn~Ll~LIetL~ksp-------l~eLS~~dL~----ea~~~L~dL~~agfKVDWLek 358 (456)
|.-=|.|++=| | .-+|.+||-=+-.=|+.|..=. ---|+++... +--..-..|+...-+|+=|++
T Consensus 383 YA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~ 462 (1041)
T KOG0243|consen 383 YAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEK 462 (1041)
T ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335555544 2 2367788777777777775322 1135555541 112233445566677888888
Q ss_pred HHHHHHHHHH-hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012816 359 ILNEISEAIE-FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE 407 (456)
Q Consensus 359 KLeEV~Eare-~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKeke 407 (456)
.|.++.+.-- .....+.+.++++.+...+....++|+.+.+++.+....
T Consensus 463 ~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 463 QLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776542 222334455555555444444445555444444444433
No 247
>PRK14146 heat shock protein GrpE; Provisional
Probab=42.77 E-value=44 Score=32.98 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=36.8
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 406 KEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 406 kev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
.++.++++++.++++++-++..+..++.++..-=+....+|....|+-+||
T Consensus 61 ~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lL 111 (215)
T PRK14146 61 KELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFL 111 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555667777778888888888877777777777777777777766665
No 248
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=42.58 E-value=88 Score=28.64 Aligned_cols=31 Identities=35% Similarity=0.432 Sum_probs=23.5
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 012816 405 EKEVAGLKESVAKTKARLSDLELESNRLEQI 435 (456)
Q Consensus 405 ekev~d~~~rv~e~k~RL~~LE~ess~L~~~ 435 (456)
++||.-+|++|.++.+|+.+||.|.+=|...
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344456789999999999999988776543
No 249
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=42.45 E-value=1.2e+02 Score=34.86 Aligned_cols=82 Identities=29% Similarity=0.211 Sum_probs=46.1
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 012816 353 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 353 VDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L 432 (456)
+.-|+.+|.++.|..+-..++.-++...++....++...++......++.-+|.++...-+++.-.+.++.+.|++-++|
T Consensus 580 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eae~~~~e~~~~~~~~~~~~~~~~~~~~e~k~~~l 659 (664)
T KOG4568|consen 580 AAALREKLKEASENKENEVQFQRAELTLENIRHQLELECQQTKDSEAELRLKELEKQKLVEEIEFLKEQDKQNENKLTDL 659 (664)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 34566666666666665555555555555554444444333333334555555555554555666677777777776665
Q ss_pred HH
Q 012816 433 EQ 434 (456)
Q Consensus 433 ~~ 434 (456)
+.
T Consensus 660 ~~ 661 (664)
T KOG4568|consen 660 ES 661 (664)
T ss_pred Hh
Confidence 43
No 250
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=42.26 E-value=1.1e+02 Score=28.64 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhHHHhcC
Q 012816 334 AKVKEMMAVLKDVESAQ 350 (456)
Q Consensus 334 ~dL~ea~~~L~dL~~ag 350 (456)
.||..+-..+.+|++|+
T Consensus 37 ~dik~~k~~~enledA~ 53 (131)
T KOG1760|consen 37 ADIKEAKTEIENLEDAS 53 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554444
No 251
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=42.20 E-value=2.8e+02 Score=26.70 Aligned_cols=59 Identities=19% Similarity=0.347 Sum_probs=33.8
Q ss_pred hHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012816 344 KDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKAN-------CVNLLESTKKELESQMNELALKEKEVAG 410 (456)
Q Consensus 344 ~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~-------~dr~~e~~kkELEe~l~eL~qKekev~d 410 (456)
+|.=..|+.+||-..=++=| + +..|+-+.+. +-..+..++.||++...|=+.+++.++|
T Consensus 37 SdfY~~gvEfdw~~eFveyV----~----cvdLeI~~eq~a~nLe~~L~EI~~lq~ElnKiqnEn~k~ekp~Kd 102 (158)
T PF03112_consen 37 SDFYSSGVEFDWKDEFVEYV----D----CVDLEIKTEQSAENLECSLMEIDSLQTELNKIQNENKKREKPIKD 102 (158)
T ss_pred hHHHHhhhhhhHHHHHHHHH----H----HHHhhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 35566899999976544322 1 1222222222 2234556667777777777777777777
No 252
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=42.12 E-value=1.1e+02 Score=24.85 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHH
Q 012816 414 SVAKTKARLSDLEL 427 (456)
Q Consensus 414 rv~e~k~RL~~LE~ 427 (456)
.+..+..+|.+++.
T Consensus 35 ~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 35 DIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 253
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.93 E-value=1.8e+02 Score=33.68 Aligned_cols=24 Identities=4% Similarity=0.015 Sum_probs=14.2
Q ss_pred eccEEeeccchHHHHHHHhhcccc
Q 012816 274 VGKYHVRASISSILQSIISRYGDI 297 (456)
Q Consensus 274 VnGFqVl~Sqv~iV~~IFeKHpDI 297 (456)
.+.+-|..+.-.-+..+...++.+
T Consensus 434 ~g~~viitTH~~eL~~~~~~~~~v 457 (771)
T TIGR01069 434 QNAQVLITTHYKELKALMYNNEGV 457 (771)
T ss_pred cCCEEEEECChHHHHHHhcCCCCe
Confidence 355566666666666655555554
No 254
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.87 E-value=1.9e+02 Score=24.73 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhHHHhc
Q 012816 334 AKVKEMMAVLKDVESA 349 (456)
Q Consensus 334 ~dL~ea~~~L~dL~~a 349 (456)
.++.+...++..|+..
T Consensus 27 ~~~~E~~~v~~EL~~l 42 (105)
T cd00632 27 AQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4455555555555543
No 255
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=41.82 E-value=5.7e+02 Score=29.03 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=6.4
Q ss_pred hhHHHHHHHhhh
Q 012816 21 ECGERCFKRNGE 32 (456)
Q Consensus 21 eCs~~C~~~~~~ 32 (456)
++.-.|+..|..
T Consensus 36 ~~~~~cL~~I~p 47 (594)
T PF05667_consen 36 EAVVRCLRVIDP 47 (594)
T ss_pred HHHHHHHHHhCc
Confidence 444556666653
No 256
>PRK14150 heat shock protein GrpE; Provisional
Probab=41.74 E-value=57 Score=31.57 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 417 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 417 e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
+++.++-++..+..++.++..--+....+|...+|+.+||
T Consensus 56 ~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL 95 (193)
T PRK14150 56 EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELL 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666665554
No 257
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=41.71 E-value=1.4e+02 Score=25.71 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHH
Q 012816 392 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQA 438 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~ 438 (456)
+.|+.+.++|....+++.++..+|+++..=..+|...+.+|+..|..
T Consensus 52 ~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 52 EDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455556666666666666667777777777777777777766653
No 258
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=41.68 E-value=3.8e+02 Score=29.51 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816 393 ELESQMNELALKEKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 393 ELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE 426 (456)
+.+....++.....++...+..+..+..||..+.
T Consensus 387 ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ 420 (522)
T PF05701_consen 387 EAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAAL 420 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444433
No 259
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=41.66 E-value=1.6e+02 Score=27.99 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012816 361 NEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 410 (456)
Q Consensus 361 eEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d 410 (456)
+++....+.+.+|+....+-...+..+..+...+...+..|...++++..
T Consensus 12 ~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~ 61 (188)
T PF10018_consen 12 DELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRT 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555544444333334444444444444444444444333
No 260
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=41.53 E-value=3.1e+02 Score=30.03 Aligned_cols=51 Identities=25% Similarity=0.476 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHH-HHHhhhHHhHHHHHHHHHHHHHhhh-hHHHHHHHhhhhh
Q 012816 393 ELESQMNELALKE-KEVAGLKESVAKTKARLSDLELESN-RLEQIIQATQSKV 443 (456)
Q Consensus 393 ELEe~l~eL~qKe-kev~d~~~rv~e~k~RL~~LE~ess-~L~~~v~~~kSKV 443 (456)
.||++|.+|-+.. -|+..++....-|.+|+.=..-++. +|...+...+..+
T Consensus 310 rLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtri 362 (455)
T KOG3850|consen 310 RLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRI 362 (455)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554443 3566666666666666655443333 3344444444333
No 261
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=41.51 E-value=2.3e+02 Score=25.61 Aligned_cols=26 Identities=4% Similarity=0.172 Sum_probs=19.6
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 328 LMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 328 l~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
-+-.+.+||..+..+ ..|++.||-|.
T Consensus 37 yR~Y~~~~l~~l~~I-~~lr~~G~sL~ 62 (140)
T PRK09514 37 YRLYTEQDLQRLRFI-RRAKQLGFTLE 62 (140)
T ss_pred CeeeCHHHHHHHHHH-HHHHHcCCCHH
Confidence 467888888877666 46899999654
No 262
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=41.46 E-value=2.3e+02 Score=24.64 Aligned_cols=62 Identities=15% Similarity=0.281 Sum_probs=34.2
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 012816 296 DIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 368 (456)
Q Consensus 296 DIAsnf~lKs~~lRs~ymn~Ll~LIetL~--kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare 368 (456)
|+|.-+.+.-..+|-+--. +||.-.. .+.-+-.+.+||..+.-+ ..|..+||- |.+|.+...
T Consensus 5 e~A~~~gvs~~tlR~ye~~---GLl~p~~r~~~g~R~Y~~~~l~~l~~I-~~lr~~G~~-------l~~I~~~l~ 68 (107)
T cd01111 5 QLALDAGVSVHIVRDYLLR---GLLHPVARTEGGYGLFDDCALQRLRFV-RAAFEAGIG-------LDELARLCR 68 (107)
T ss_pred HHHHHHCcCHHHHHHHHHC---CCCCCCCcCCCCCeecCHHHHHHHHHH-HHHHHcCCC-------HHHHHHHHH
Confidence 4444455544445432222 3332221 122467888888876655 669999995 455555443
No 263
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=41.43 E-value=1.7e+02 Score=32.18 Aligned_cols=58 Identities=22% Similarity=0.255 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816 390 TKKELESQMNELALKEK-------------EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 448 (456)
Q Consensus 390 ~kkELEe~l~eL~qKek-------------ev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~ 448 (456)
-+.+-|++|.+|+||-- +-.+.+.|.+=-.+|+.+++-+. +|+..--+-+||+.+-.+
T Consensus 312 ek~~kE~kL~elAQkAR~~r~g~~~~~~~ked~e~~~R~eiR~~Rrke~~~~~-nlsra~~dKrsKl~r~r~ 382 (506)
T KOG2441|consen 312 EKEEKEQKLRELAQKAREERGGPQTGAIEKEDREARTREEIRRDRRKEREKDR-NLSRAAPDKRSKLQRDRG 382 (506)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHhh-hhhhhccchhhhhhhccC
Confidence 34566777788887632 23334444444478888888776 666655666777765443
No 264
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=41.42 E-value=1.4e+02 Score=26.78 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=19.6
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 012816 368 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESV 415 (456)
Q Consensus 368 e~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv 415 (456)
+++++...+++.-...-..|..+++.|.+.++|=...+-|-.-+|+|+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333333344444444444444444444443333333
No 265
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.42 E-value=4.1e+02 Score=27.21 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 012816 383 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDL 425 (456)
Q Consensus 383 ~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~L 425 (456)
++..+...++|+|-+...+..+..|+.+.++-|..-++-|...
T Consensus 91 ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka 133 (246)
T KOG4657|consen 91 IEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKA 133 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4445666677888877777777777777666666555544333
No 266
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=41.38 E-value=3.8e+02 Score=31.45 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012816 386 LLESTKKELESQMNELALKEKEVAGL 411 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~ 411 (456)
.++.+..+|++....|.++.+.+..+
T Consensus 344 dve~Lr~rle~k~~~l~kk~~~~~~~ 369 (775)
T PF10174_consen 344 DVEALRFRLEEKNSQLEKKQAQIEKL 369 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444443
No 267
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=41.17 E-value=1.7e+02 Score=29.53 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=13.5
Q ss_pred HHHHhhhhhhhccccchhhhc
Q 012816 435 IIQATQSKVTKFSQKSLADEI 455 (456)
Q Consensus 435 ~v~~~kSKV~kf~~kSl~D~l 455 (456)
.+..++..+++..-.+.+||.
T Consensus 198 ~l~~a~~~l~~~~I~AP~dG~ 218 (346)
T PRK10476 198 ALAIAELHLEDTTVRAPFDGR 218 (346)
T ss_pred HHHHHHHHhhcCEEECCCCcE
Confidence 344456666777777777775
No 268
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=41.00 E-value=1.7e+02 Score=24.94 Aligned_cols=44 Identities=23% Similarity=0.444 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 012816 393 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 436 (456)
Q Consensus 393 ELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v 436 (456)
.|+..+..|......+.++..|+.+...+|..|+.....+..++
T Consensus 22 aLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 22 ALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555666666666666777777777777777666665544
No 269
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=40.86 E-value=5e+02 Score=28.07 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=14.7
Q ss_pred HHHHHhcchhhhccHHHHHHHHHHHhHHHhc
Q 012816 319 VVQELQSTSLMQMTKAKVKEMMAVLKDVESA 349 (456)
Q Consensus 319 LIetL~kspl~eLS~~dL~ea~~~L~dL~~a 349 (456)
|+..+=-.|+..+=+..=..+...|.+.+.+
T Consensus 17 lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a 47 (445)
T PRK13428 17 LVWRFVVPPVRRLMAARQDTVRQQLAESATA 47 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344555444445555555555544
No 270
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=40.78 E-value=5e+02 Score=29.60 Aligned_cols=63 Identities=13% Similarity=0.269 Sum_probs=47.2
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhh
Q 012816 305 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFS 370 (456)
Q Consensus 305 s~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~ 370 (456)
|..+|...|-+||. -.+|..+|+.++|..+|.+|+..|..=-.--.-.|| +-++|......|+
T Consensus 456 n~~~R~slmi~ll~-~d~~~~P~~~d~s~eel~~a~~llk~e~~~l~~dd~--q~~~ec~s~~~~l 518 (617)
T KOG0050|consen 456 NDAPRVSLMIVLLA-YDTLNYPPFKDFSQEELDNAYDLLKQEAEELVSDDY--QFLKECLSRMQYL 518 (617)
T ss_pred hhhhhhHHHHHHHH-hcccCCCCCCCCCHHHHHHHHHHHHHHHHhcChHHH--HHHHHHHHHHHHH
Confidence 46677777666554 478889999999999999999998764444444567 7778877777666
No 271
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=40.76 E-value=3.3e+02 Score=25.92 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHhH---HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816 379 AKANCVNLLESTKKELESQMNEL-ALKEKEVAGLKESV---AKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 448 (456)
Q Consensus 379 eKe~~dr~~e~~kkELEe~l~eL-~qKekev~d~~~rv---~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~ 448 (456)
++...+..+..++++.++..++. ...+.++...++|+ ..+..|+..|+....=|...+..++.++..+.+
T Consensus 25 A~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~e~L~~l~~ 98 (185)
T PRK01194 25 YSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEHLMNITK 98 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 33334445666666666555433 33344444455555 566788888888777888888888888877753
No 272
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=40.74 E-value=4.9e+02 Score=28.61 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=13.7
Q ss_pred HHhhhHHhHHHHHHHHHHHHHh
Q 012816 407 EVAGLKESVAKTKARLSDLELE 428 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~e 428 (456)
...|+.+-++.|.-||+.||+-
T Consensus 347 RaRdIqEalEscqtrisKlEl~ 368 (455)
T KOG3850|consen 347 RARDIQEALESCQTRISKLELQ 368 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777653
No 273
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=40.62 E-value=1.4e+02 Score=26.12 Aligned_cols=26 Identities=8% Similarity=0.284 Sum_probs=18.4
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 328 LMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 328 l~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
-+..+.+||..+.- +..|+.+||-|.
T Consensus 36 yR~Y~~~~l~~l~~-I~~lr~~G~sL~ 61 (127)
T cd04784 36 YRLYDEEHLERLLF-IRRCRSLDMSLD 61 (127)
T ss_pred CeecCHHHHHHHHH-HHHHHHcCCCHH
Confidence 46778888876554 566888999543
No 274
>PRK14159 heat shock protein GrpE; Provisional
Probab=40.59 E-value=50 Score=31.70 Aligned_cols=38 Identities=11% Similarity=0.244 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhh
Q 012816 417 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADE 454 (456)
Q Consensus 417 e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~ 454 (456)
+++.++-++..+..++.++..-=+....+|...+|+-+
T Consensus 41 elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~ 78 (176)
T PRK14159 41 ELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKD 78 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 275
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.44 E-value=2.3e+02 Score=26.04 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=11.0
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHH
Q 012816 402 ALKEKEVAGLKESVAKTKARLSD 424 (456)
Q Consensus 402 ~qKekev~d~~~rv~e~k~RL~~ 424 (456)
...++....+++|+.++++.|-.
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555443
No 276
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=40.44 E-value=1.7e+02 Score=32.14 Aligned_cols=85 Identities=13% Similarity=0.246 Sum_probs=39.5
Q ss_pred chHHHHHHHhhcccccccCcccch-hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 012816 283 ISSILQSIISRYGDIAANCNLESN-SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 361 (456)
Q Consensus 283 qv~iV~~IFeKHpDIAsnf~lKs~-~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLe 361 (456)
+.++-..|-++|.|++.++.--.. ..| ...|..=|..+.+.-+.+-...+|.++...+..|+..=-...++-.-|+
T Consensus 27 k~eV~~~I~~~y~df~~~~~~~~~L~~~---~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~ 103 (593)
T PF06248_consen 27 KEEVHSMINKKYSDFSPSLQSAKDLIER---SKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE 103 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888899988876543322 222 1223332322222222344455666666655555542222233333333
Q ss_pred HHHHHHHhh
Q 012816 362 EISEAIEFS 370 (456)
Q Consensus 362 EV~Eare~~ 370 (456)
.+.+.-+.+
T Consensus 104 ~L~~i~~~l 112 (593)
T PF06248_consen 104 QLQEIDELL 112 (593)
T ss_pred HHHHHHHHH
Confidence 443333333
No 277
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=40.35 E-value=1.4e+02 Score=26.48 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=19.0
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 327 SLMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 327 pl~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
.-+-.+.++|..+.-+ ..|+++||-|.
T Consensus 35 gyR~Y~~~~l~~l~~I-~~lr~lG~sL~ 61 (127)
T TIGR02047 35 NYRVYTVGHVERLAFI-RNCRTLDMSLA 61 (127)
T ss_pred CCCcCCHHHHHHHHHH-HHHHHcCCCHH
Confidence 3467888888776554 45789999543
No 278
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=40.34 E-value=2.4e+02 Score=34.74 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=5.7
Q ss_pred hhhHHHHHHHHH
Q 012816 356 LRNILNEISEAI 367 (456)
Q Consensus 356 LekKLeEV~Ear 367 (456)
+-+.|+|+.+..
T Consensus 466 ~~keL~e~i~~l 477 (1317)
T KOG0612|consen 466 MDKELEETIEKL 477 (1317)
T ss_pred HHHHHHHHHHHH
Confidence 444555554444
No 279
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=40.29 E-value=2.7e+02 Score=24.79 Aligned_cols=25 Identities=0% Similarity=0.101 Sum_probs=18.0
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
+..+.+++..+ ..+..|++.||-|+
T Consensus 37 R~Y~~~~~~~l-~~I~~lr~~G~sL~ 61 (133)
T cd04787 37 RLYSEKDLSRL-RFILSARQLGFSLK 61 (133)
T ss_pred eeCCHHHHHHH-HHHHHHHHcCCCHH
Confidence 46777777766 56667889999543
No 280
>PLN02678 seryl-tRNA synthetase
Probab=40.20 E-value=2.7e+02 Score=30.41 Aligned_cols=86 Identities=8% Similarity=0.032 Sum_probs=34.8
Q ss_pred HhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 012816 343 LKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARL 422 (456)
Q Consensus 343 L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL 422 (456)
..-|..-|+.++++..-|.-=.+.|++..+...+..++...-+.|..++.. -++.....++++.+++++.++...|
T Consensus 19 ~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~----~~~~~~l~~~~~~Lk~ei~~le~~~ 94 (448)
T PLN02678 19 RESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIA----KEDATELIAETKELKKEITEKEAEV 94 (448)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555433333333344444444444444444333333221100 0111112223333444555555555
Q ss_pred HHHHHhhhhH
Q 012816 423 SDLELESNRL 432 (456)
Q Consensus 423 ~~LE~ess~L 432 (456)
.+++.+...+
T Consensus 95 ~~~~~~l~~~ 104 (448)
T PLN02678 95 QEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 281
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=39.90 E-value=7.2e+02 Score=29.62 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=19.9
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012816 373 HQTIDAAKANCVNLLESTKKELESQMNELAL 403 (456)
Q Consensus 373 ~~~~e~eKe~~dr~~e~~kkELEe~l~eL~q 403 (456)
.+++.+-|..++..+...+.|+++-|.++..
T Consensus 482 d~~l~~~kq~~d~e~~rik~ev~eal~~~k~ 512 (861)
T PF15254_consen 482 DQELLENKQQFDIETTRIKIEVEEALVNVKS 512 (861)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666776677777777776655443
No 282
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.88 E-value=1.1e+02 Score=33.81 Aligned_cols=48 Identities=17% Similarity=0.346 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 012816 392 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 442 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSK 442 (456)
.|||++|+.| +.|+.....+..+...+|.+||.+...|...+..++++
T Consensus 79 sELEKqLaaL---rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 79 AQMQKQYEEI---RRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHH---HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4444444444 22333222345566667777777777776665444443
No 283
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=39.51 E-value=2.9e+02 Score=24.91 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 441 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kS 441 (456)
++.++.++++...++...+.....+..++......|..+.++..++...+...+.
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t 129 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT 129 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334334444444444444445555555555555444444433
No 284
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=39.49 E-value=6.2e+02 Score=28.80 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=15.5
Q ss_pred HHHHHHHhhcccccccCcccchhHHHHHHHHH
Q 012816 285 SILQSIISRYGDIAANCNLESNSMRAYYLECL 316 (456)
Q Consensus 285 ~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~L 316 (456)
..+..+-+|-++.-. +|..+|+-.|-..
T Consensus 159 ~~~EaL~ekLk~~~e----en~~lr~k~~llk 186 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEE----ENTQLRSKAMLLK 186 (596)
T ss_pred HHHHHHHhhcCChHH----HHHHHHHHHHHHH
Confidence 445555556555433 4677777655443
No 285
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.48 E-value=3.8e+02 Score=26.27 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=6.1
Q ss_pred hhhhhhhHHHHHHhh
Q 012816 369 FSTQHQTIDAAKANC 383 (456)
Q Consensus 369 ~~~~~~~~e~eKe~~ 383 (456)
+...+..+..+.++.
T Consensus 54 L~~e~~~l~~e~e~L 68 (251)
T PF11932_consen 54 LLAEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 286
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=39.41 E-value=3.9e+02 Score=30.77 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHhhhhH
Q 012816 414 SVAKTKARLSDLELESNRL 432 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L 432 (456)
+...+.++|..|+.....|
T Consensus 190 ~~~~~~~q~~~le~ki~~l 208 (629)
T KOG0963|consen 190 EEQNLQEQLEELEKKISSL 208 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 287
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=39.29 E-value=4.7e+02 Score=30.51 Aligned_cols=12 Identities=17% Similarity=0.025 Sum_probs=4.9
Q ss_pred HHHHHhhccccc
Q 012816 287 LQSIISRYGDIA 298 (456)
Q Consensus 287 V~~IFeKHpDIA 298 (456)
+.+++.++-||+
T Consensus 355 ~~~e~~k~~di~ 366 (698)
T KOG0978|consen 355 KDRESQKERDIL 366 (698)
T ss_pred HHHHhhhhHhHH
Confidence 333444444443
No 288
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.27 E-value=1e+02 Score=34.14 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 012816 400 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 443 (456)
Q Consensus 400 eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV 443 (456)
.+.+.|+++++++..+..|...+..++.+..+|+..+.-|+..|
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444
No 289
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.14 E-value=4.5e+02 Score=30.08 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhH-HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 388 ESTKKELESQMNELALKEKEVAGLKESV-AKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 388 e~~kkELEe~l~eL~qKekev~d~~~rv-~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
|..+.|+-.|-..|++.-+...| .|+ .++.+++..||-+.+....-..-+.+=|++
T Consensus 390 EqkkEec~kme~qLkkAh~~~dd--ar~~pe~~d~i~~le~e~~~y~de~~kaqaevdr 446 (654)
T KOG4809|consen 390 EQKKEECSKMEAQLKKAHNIEDD--ARMNPEFADQIKQLEKEASYYRDECGKAQAEVDR 446 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHh--hhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333 344 667788888887777766655545544443
No 290
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.94 E-value=2.3e+02 Score=23.60 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=5.1
Q ss_pred hHHhHHHHHHHH
Q 012816 411 LKESVAKTKARL 422 (456)
Q Consensus 411 ~~~rv~e~k~RL 422 (456)
|.+||..+-++|
T Consensus 58 ~~~rl~~LL~kl 69 (72)
T PF06005_consen 58 WQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 344444444443
No 291
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=38.78 E-value=3.9e+02 Score=26.29 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=7.9
Q ss_pred hhccHHHHHHHHHHHhHHH
Q 012816 329 MQMTKAKVKEMMAVLKDVE 347 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~ 347 (456)
+..-++++.+|...|..+.
T Consensus 148 ~~~Ae~El~~A~~LL~~v~ 166 (264)
T PF06008_consen 148 RQNAEDELKEAEDLLSRVQ 166 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 292
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=38.71 E-value=95 Score=29.87 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARL 422 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL 422 (456)
.++...+.|+..+..+.+.+..|+|+.+++.++++.|
T Consensus 122 kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 122 KLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555444443
No 293
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=38.69 E-value=2.1e+02 Score=24.60 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=37.8
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012816 328 LMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE 407 (456)
Q Consensus 328 l~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKeke 407 (456)
-+..+.+++..+ ..+..|...||-|. +|..... .... +.....++...++|+.++.+|.+....
T Consensus 37 yR~Y~~~~i~~l-~~I~~lr~~G~sl~-------~i~~l~~---~~~~-----~~~~~~l~~~~~~l~~~i~~l~~~~~~ 100 (108)
T cd01107 37 YRYYSAEQLERL-NRIKYLRDLGFPLE-------EIKEILD---ADND-----DELRKLLREKLAELEAEIEELQRILRL 100 (108)
T ss_pred ccccCHHHHHHH-HHHHHHHHcCCCHH-------HHHHHHh---cCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888877 47788888999553 4433322 1111 112234555556666655555555554
Q ss_pred Hhh
Q 012816 408 VAG 410 (456)
Q Consensus 408 v~d 410 (456)
+.+
T Consensus 101 l~~ 103 (108)
T cd01107 101 LED 103 (108)
T ss_pred HHH
Confidence 444
No 294
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=38.59 E-value=1.6e+02 Score=26.81 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 416 AKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 416 ~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
.++..||.++...-..|..++..+-.|++
T Consensus 68 ~~~~~rl~~~r~r~~~L~hR~l~v~~~~e 96 (141)
T PF13874_consen 68 LETSARLEEARRRHQELSHRLLRVLRKQE 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 295
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=38.42 E-value=2.6e+02 Score=24.55 Aligned_cols=25 Identities=8% Similarity=0.194 Sum_probs=18.7
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcch
Q 012816 328 LMQMTKAKVKEMMAVLKDVESAQIDV 353 (456)
Q Consensus 328 l~eLS~~dL~ea~~~L~dL~~agfKV 353 (456)
-+..+.+||..+. .+..|++.||-|
T Consensus 36 yR~Y~~~~l~~l~-~I~~lr~~G~sL 60 (126)
T cd04783 36 YRRYPEETVTRLR-FIKRAQELGFTL 60 (126)
T ss_pred CeecCHHHHHHHH-HHHHHHHcCCCH
Confidence 3667888887764 566789999965
No 296
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=38.38 E-value=2.2e+02 Score=32.68 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhh
Q 012816 333 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFST 371 (456)
Q Consensus 333 ~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~ 371 (456)
.++--....++.-.+...+=+.||..-++-+...+++-+
T Consensus 175 ~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~ 213 (775)
T TIGR00763 175 KDELQEVLETVNIEKRLKKALELLKKELELLKLQNKITK 213 (775)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555666666665555555433
No 297
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=38.31 E-value=2.6e+02 Score=24.21 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=4.7
Q ss_pred HHHHHHHHhHHH
Q 012816 336 VKEMMAVLKDVE 347 (456)
Q Consensus 336 L~ea~~~L~dL~ 347 (456)
+.+...++..|.
T Consensus 33 ~~E~~~v~~eL~ 44 (110)
T TIGR02338 33 LKEAEKALEELE 44 (110)
T ss_pred HHHHHHHHHHHH
Confidence 333334444433
No 298
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.18 E-value=1.8e+02 Score=29.76 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=34.4
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHH----HHHHHHHHhhhhHHH
Q 012816 368 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTK----ARLSDLELESNRLEQ 434 (456)
Q Consensus 368 e~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k----~RL~~LE~ess~L~~ 434 (456)
.+...+++.+++.....+.+ .+.+++....+.+.++..|+.+...++..-+ .-...+|.+...|.+
T Consensus 34 ~~a~~~q~~k~~~~~~~r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~ 103 (247)
T COG3879 34 MLAAVFQTSKGESVRRARDL-DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRM 103 (247)
T ss_pred HHHHHHhhccCcchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 34444555555555444445 4555555555666666666666555555554 333444444444443
No 299
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=38.15 E-value=5e+02 Score=27.26 Aligned_cols=30 Identities=10% Similarity=0.220 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 012816 414 SVAKTKARLSDLELESNRLEQIIQATQSKV 443 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v~~~kSKV 443 (456)
+..++-+.+.++-.+...++.-+..++.++
T Consensus 208 eade~he~~ve~~~~~~e~~ee~~~~~~el 237 (294)
T COG1340 208 EADELHEEFVELSKKIDELHEEFRNLQNEL 237 (294)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 300
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=38.01 E-value=4.2e+02 Score=26.59 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=8.6
Q ss_pred cccccCcccchhH
Q 012816 296 DIAANCNLESNSM 308 (456)
Q Consensus 296 DIAsnf~lKs~~l 308 (456)
|++++.+...|.-
T Consensus 124 D~vAd~ra~TPta 136 (319)
T PF02601_consen 124 DFVADLRAPTPTA 136 (319)
T ss_pred HHHHHhhCCCHHH
Confidence 6667777777653
No 301
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=37.79 E-value=5.2e+02 Score=29.23 Aligned_cols=62 Identities=26% Similarity=0.404 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhh----------HHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 012816 361 NEISEAIEFSTQHQTIDAAKANC----------VNLLESTK----KELESQMNELALKEKEVAGLKESVAKTKARL 422 (456)
Q Consensus 361 eEV~Eare~~~~~~~~e~eKe~~----------dr~~e~~k----kELEe~l~eL~qKekev~d~~~rv~e~k~RL 422 (456)
+.|.||+++...-+++++++... ...|+.++ -.|+.+-.+...+|.|++-+++++.+++..|
T Consensus 285 e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 285 EKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34566777777777777765321 11222222 3355555677777777777777776665544
No 302
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=37.77 E-value=11 Score=41.79 Aligned_cols=126 Identities=18% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHH--HHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHH
Q 012816 311 YYLECLCSVVQELQSTSLMQMTKAKVKEM--MAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLE 388 (456)
Q Consensus 311 ~ymn~Ll~LIetL~kspl~eLS~~dL~ea--~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e 388 (456)
.+++.|+.|+..|.-.|.....+.+|... ...-..|...- ++||+..++++.+.+. .....+.
T Consensus 167 ~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~--l~~L~~~~~~L~~~k~-------------~r~~~~~ 231 (619)
T PF03999_consen 167 ELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDEN--LEKLQELLQELEEEKE-------------EREEKLQ 231 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHH--HHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 45677788888888777213334444331 12223333333 3788877776665542 1111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-------h-hHHhHHHHHHHHHHHH-HhhhhHHHHHHHhhhhhhhccccch
Q 012816 389 STKKELESQMNELALKEKEVA-------G-LKESVAKTKARLSDLE-LESNRLEQIIQATQSKVTKFSQKSL 451 (456)
Q Consensus 389 ~~kkELEe~l~eL~qKekev~-------d-~~~rv~e~k~RL~~LE-~ess~L~~~v~~~kSKV~kf~~kSl 451 (456)
.+..+|...-.-|..-+.+.. . -..-|..++..|.+|+ ++...|...|..++..+..+-++.+
T Consensus 232 ~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~ 303 (619)
T PF03999_consen 232 ELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCH 303 (619)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 333333322222222222222 1 1234566777777777 6777778888888888877655443
No 303
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=37.64 E-value=7.7e+02 Score=29.95 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=25.6
Q ss_pred HHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHH
Q 012816 286 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQE 322 (456)
Q Consensus 286 iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIet 322 (456)
.+..+-++|.||.+.+.---+.+...+...+-.+-..
T Consensus 367 ~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~ 403 (1201)
T PF12128_consen 367 QLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQ 403 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778899999888877777777776555554444
No 304
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=37.63 E-value=3.7e+02 Score=25.59 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=13.2
Q ss_pred chhhhhhHHHHHHHHH-HhhhhhhhHHH
Q 012816 352 DVDWLRNILNEISEAI-EFSTQHQTIDA 378 (456)
Q Consensus 352 KVDWLekKLeEV~Ear-e~~~~~~~~e~ 378 (456)
.++.|++-|++|.... +.++....++.
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665333 44444444433
No 305
>PRK14147 heat shock protein GrpE; Provisional
Probab=37.54 E-value=56 Score=31.09 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 012816 388 ESTKKELESQMNELALKEKEVAGLKESVAKT 418 (456)
Q Consensus 388 e~~kkELEe~l~eL~qKekev~d~~~rv~e~ 418 (456)
+.+++++++....+.+...+....|.|...-
T Consensus 28 ~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE 58 (172)
T PRK14147 28 ESLRSEIALVKADALRERADLENQRKRIARD 58 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333444444444444444333
No 306
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=37.53 E-value=2e+02 Score=26.05 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Q 012816 361 NEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKA 420 (456)
Q Consensus 361 eEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~ 420 (456)
+||.......+.......+.......+.++.+..+..|+=|.+|..++.+++..|.++|+
T Consensus 51 ~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 51 EEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
No 307
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=37.37 E-value=3.9e+02 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=20.4
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 411 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
|....+....+|.+||.++... +|+.+-.|
T Consensus 187 ~~~~~~~~~~~~Q~lEe~Ri~~------lk~~l~~~ 216 (236)
T cd07651 187 WNREWKAALDDFQDLEEERIQF------LKSNCWTF 216 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 6667777788888888776554 55555544
No 308
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=37.21 E-value=3.2e+02 Score=24.75 Aligned_cols=26 Identities=12% Similarity=0.358 Sum_probs=18.6
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 328 LMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 328 l~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
-+..+.++|..+. .+..|+.+||.|+
T Consensus 36 yR~Y~~~~l~~l~-~I~~lr~~G~sl~ 61 (135)
T PRK10227 36 YRTYTQQHLNELT-LLRQARQVGFNLE 61 (135)
T ss_pred cccCCHHHHHHHH-HHHHHHHCCCCHH
Confidence 4677888887665 5566889999543
No 309
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=36.95 E-value=68 Score=25.11 Aligned_cols=18 Identities=22% Similarity=0.505 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012816 393 ELESQMNELALKEKEVAG 410 (456)
Q Consensus 393 ELEe~l~eL~qKekev~d 410 (456)
.+.+++.+|.+|++...+
T Consensus 23 did~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 23 DIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555554443
No 310
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=36.72 E-value=2.6e+02 Score=29.12 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=11.2
Q ss_pred hhhhhhHHHHHHHHH
Q 012816 353 VDWLRNILNEISEAI 367 (456)
Q Consensus 353 VDWLekKLeEV~Ear 367 (456)
.+||+.+|.++....
T Consensus 173 ~~fl~~ql~~~~~~l 187 (444)
T TIGR03017 173 ALWFVQQIAALREDL 187 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 378888888877655
No 311
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=36.66 E-value=44 Score=29.36 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=26.5
Q ss_pred HHHHHHhcchhhhccHHHHHHHHHHHhHHHh
Q 012816 318 SVVQELQSTSLMQMTKAKVKEMMAVLKDVES 348 (456)
Q Consensus 318 ~LIetL~kspl~eLS~~dL~ea~~~L~dL~~ 348 (456)
-||+.|.+.+ .+||++|+.-|..++.|++.
T Consensus 42 rIv~IL~K~k-~dltddD~~hMrkVV~yv~r 71 (92)
T PF11338_consen 42 RIVEILRKRK-TDLTDDDYEHMRKVVGYVKR 71 (92)
T ss_pred HHHHHHhcCc-ccCCHHHHHHHHHHHHHHHH
Confidence 3778888888 99999999999999999873
No 312
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=36.41 E-value=6.9e+02 Score=28.41 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=11.9
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 012816 402 ALKEKEVAGLKESVAKTKARLSDLELES 429 (456)
Q Consensus 402 ~qKekev~d~~~rv~e~k~RL~~LE~es 429 (456)
.++..+++.+++++.++.+.+..-+...
T Consensus 443 ~~~~~~ik~~r~~~k~~~~e~~~Kee~~ 470 (594)
T PF05667_consen 443 KQKLQEIKELREEIKEIEEEIRQKEELY 470 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333333
No 313
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=36.10 E-value=5.3e+02 Score=32.09 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLS 423 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~ 423 (456)
++..-+.++++++.+.++...+.+..+++...+..|.
T Consensus 513 l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le 549 (1317)
T KOG0612|consen 513 LEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLE 549 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333444555555555555555554444444444433
No 314
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=36.06 E-value=4.6e+02 Score=26.24 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=32.8
Q ss_pred chhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHH
Q 012816 326 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEI 363 (456)
Q Consensus 326 spl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV 363 (456)
.||+.+-+.+|.++...-+-|+..-+.+|-.+.|+...
T Consensus 110 ~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka 147 (244)
T cd07595 110 SPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAA 147 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Confidence 35677888999999999999999999999999999754
No 315
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=36.02 E-value=5.6e+02 Score=28.20 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=7.3
Q ss_pred HHhcCcchhhhhhHH
Q 012816 346 VESAQIDVDWLRNIL 360 (456)
Q Consensus 346 L~~agfKVDWLekKL 360 (456)
|+.+.=+|.+|+..|
T Consensus 220 leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 220 LEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444455555444
No 316
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=35.99 E-value=2.5e+02 Score=27.03 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH-----HHHHHHHHH
Q 012816 353 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT-----KARLSDLEL 427 (456)
Q Consensus 353 VDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~-----k~RL~~LE~ 427 (456)
|.|+|+|++-|--.-+-+.+.+. .+++|+++-++-...+.++-+.+-.++.++ +-|+..||.
T Consensus 86 v~~vRkkID~vNreLkpl~~~cq-------------KKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEE 152 (159)
T PF04949_consen 86 VEMVRKKIDSVNRELKPLGQSCQ-------------KKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEE 152 (159)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHH
Q 012816 428 ESNRLE 433 (456)
Q Consensus 428 ess~L~ 433 (456)
=+..|+
T Consensus 153 Lsk~ie 158 (159)
T PF04949_consen 153 LSKEIE 158 (159)
T ss_pred HHhhcc
No 317
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=35.79 E-value=26 Score=38.69 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=31.5
Q ss_pred cccccccceEEeccEEeeccchHHHHHHHhhcccccccCccc
Q 012816 263 EAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLE 304 (456)
Q Consensus 263 E~~Svvsetv~VnGFqVl~Sqv~iV~~IFeKHpDIAsnf~lK 304 (456)
.+..+.+|-+.++||||-|..+ ..++-.||+|+--|-+-
T Consensus 425 ~IvdR~KdlIk~~G~qv~P~Ei---E~vL~~hP~V~eaaVvg 463 (537)
T KOG1176|consen 425 YIVDRSKDLIKYGGEQVSPAEI---EAVLLTHPDVLEAAVVG 463 (537)
T ss_pred EEecchhhheeeCCEEeCHHHH---HHHHHhCCCccEEEEEc
Confidence 6777888889999999999885 56799999997655443
No 318
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.55 E-value=3.8e+02 Score=25.12 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=10.4
Q ss_pred hccHHHHHHHHHHHhHHHhcC
Q 012816 330 QMTKAKVKEMMAVLKDVESAQ 350 (456)
Q Consensus 330 eLS~~dL~ea~~~L~dL~~ag 350 (456)
.+|...=.-+..+|.++-...
T Consensus 15 Gft~~QAe~i~~~l~~~l~~~ 35 (177)
T PF07798_consen 15 GFTEEQAEAIMKALREVLNDS 35 (177)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 355555555555555544433
No 319
>PRK14164 heat shock protein GrpE; Provisional
Probab=35.54 E-value=51 Score=32.71 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHH
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTK 419 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k 419 (456)
+..+++++++....|.+...+....|.|...-+
T Consensus 79 ~~~le~el~el~d~llR~~AE~eN~RkR~~rE~ 111 (218)
T PRK14164 79 ASTVEAQLAERTEDLQRVTAEYANYRRRTERER 111 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555566666666655554333
No 320
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.39 E-value=2e+02 Score=23.33 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=3.7
Q ss_pred HhHHHHHHHHHHHH
Q 012816 413 ESVAKTKARLSDLE 426 (456)
Q Consensus 413 ~rv~e~k~RL~~LE 426 (456)
.++..+.+||..++
T Consensus 39 ~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 39 RQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHT-----
T ss_pred HHHHHHHHHHHHhc
Confidence 33344444444433
No 321
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=35.26 E-value=5.5e+02 Score=30.56 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=25.2
Q ss_pred chhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHH
Q 012816 326 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 362 (456)
Q Consensus 326 spl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeE 362 (456)
-..++..+.+..+|.+.|.-+- .||..+|++
T Consensus 649 ~~~~e~~k~~re~a~N~LE~~l------~e~q~~l~d 679 (902)
T KOG0104|consen 649 FVQKEKEKSEREEASNELEAFL------FELQDKLDD 679 (902)
T ss_pred HHHhhhhHHHHHHHHHHHHHHH------HHHHHHhcC
Confidence 3347788888888888887764 999999998
No 322
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=35.25 E-value=1.8e+02 Score=23.23 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHhhhHHhHHHHHHHHHHHHHhhhhHH-HHHHHhhhhhhhc
Q 012816 388 ESTKKELESQMNELA-----LKEKEVAGLKESVAKTKARLSDLELESNRLE-QIIQATQSKVTKF 446 (456)
Q Consensus 388 e~~kkELEe~l~eL~-----qKekev~d~~~rv~e~k~RL~~LE~ess~L~-~~v~~~kSKV~kf 446 (456)
..+..+|...+..+. ++...+.++...+.+..+=|.+|++|...+. ..-..+++||+.|
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~y 66 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSY 66 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
No 323
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=35.03 E-value=2.8e+02 Score=29.78 Aligned_cols=16 Identities=13% Similarity=0.190 Sum_probs=7.0
Q ss_pred hhhHHhHHHHHHHHHH
Q 012816 409 AGLKESVAKTKARLSD 424 (456)
Q Consensus 409 ~d~~~rv~e~k~RL~~ 424 (456)
.+++++++++.++|..
T Consensus 86 ~~~~~~~~~le~~L~~ 101 (363)
T COG0216 86 KELEAKIEELEEELKI 101 (363)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 324
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=34.79 E-value=4.1e+02 Score=25.27 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012816 388 ESTKKELESQMNELALKEKEV 408 (456)
Q Consensus 388 e~~kkELEe~l~eL~qKekev 408 (456)
+.++++.+++|.+-.++-.++
T Consensus 61 e~l~a~ye~~L~~Ar~eA~~I 81 (155)
T PRK06569 61 EKLNKYYNEEIDKTNTEIDRL 81 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 325
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=34.63 E-value=1.6e+02 Score=24.62 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=33.6
Q ss_pred hHHHHHHHhhcccccccCccc---------chhHH---HHHHHHHHHHHHHHhcch
Q 012816 284 SSILQSIISRYGDIAANCNLE---------SNSMR---AYYLECLCSVVQELQSTS 327 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~lK---------s~~lR---s~ymn~Ll~LIetL~ksp 327 (456)
..+..++|++||++-.-|..- ++.++ ..++++|-.+|..|....
T Consensus 24 ~~~f~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~ 79 (140)
T cd01040 24 LEFYERLFKAHPETRALFSRFGGLSAALKGSPKFKAHGKRVLNALDEAIKNLDDLE 79 (140)
T ss_pred HHHHHHHHHHChhHHHHhHHhCCchHhHccCHHHHHHHHHHHHHHHHHHHhccChH
Confidence 467889999999998888653 45555 478888888888876654
No 326
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=34.55 E-value=2.1e+02 Score=27.82 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhh
Q 012816 415 VAKTKARLSDLELES 429 (456)
Q Consensus 415 v~e~k~RL~~LE~es 429 (456)
..+++.+|.+|+.+.
T Consensus 155 ~~e~~~~l~~l~~ei 169 (176)
T PF12999_consen 155 REELEKKLEELEKEI 169 (176)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 327
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=34.53 E-value=3.6e+02 Score=24.56 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=31.5
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHhH-HHHHHHHHHHHHhhhhHHHHH
Q 012816 374 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVA----GLKESV-AKTKARLSDLELESNRLEQII 436 (456)
Q Consensus 374 ~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~----d~~~rv-~e~k~RL~~LE~ess~L~~~v 436 (456)
+-|+.+|+.-.+.|+.-+.+.|+ |+..++...- .+..++ .++.++|..|+....+.+.-|
T Consensus 31 ~RLKQAKeEA~~Eie~yr~qrE~---efk~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~~~k~~~~V 95 (108)
T KOG1772|consen 31 RRLKQAKEEAEKEIEEYRSQREK---EFKEKESAASGSQGALEKRLEQETDDKIAGLKTSAQKNSDDV 95 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34444444444445555544443 3444444431 122233 667788888887777765544
No 328
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.50 E-value=2.7e+02 Score=23.07 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHh
Q 012816 415 VAKTKARLSDLELESNRLEQIIQAT 439 (456)
Q Consensus 415 v~e~k~RL~~LE~ess~L~~~v~~~ 439 (456)
+.+....+.+|.....++.+-+..+
T Consensus 42 ~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 42 IKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 329
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=34.25 E-value=1.9e+02 Score=25.45 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=31.8
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 295 GDIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 295 pDIAsnf~lKs~~lRs~ymn~Ll~LIetL--~kspl~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
+++|.-+.+....+| +|-. .+||--- ..+--+..|.++|..+. .+..+..+||-|+
T Consensus 4 ~e~a~~~gvs~~tlR-yYe~--~GLl~p~~r~~~gyR~Y~~~~l~~l~-~I~~lr~~G~sL~ 61 (127)
T TIGR02044 4 GQVAKLTGLSSKMIR-YYEE--KGLIPPPLRSEGGYRTYTQQHLDELR-LISRARQVGFSLE 61 (127)
T ss_pred HHHHHHHCcCHHHHH-HHHH--CCCCCCCCcCCCCCeecCHHHHHHHH-HHHHHHHCCCCHH
Confidence 345555555555555 3322 2333211 12334778888988776 5556889999544
No 330
>PLN02939 transferase, transferring glycosyl groups
Probab=34.16 E-value=6e+02 Score=30.75 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=34.2
Q ss_pred HHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHH
Q 012816 316 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISE 365 (456)
Q Consensus 316 Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~E 365 (456)
++.=-+.||..- ++=+-.|.+....++.-...++.++-|+..|+.+..
T Consensus 161 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (977)
T PLN02939 161 ILTEKEALQGKI--NILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRN 208 (977)
T ss_pred HHHHHHHHHhhH--HHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhh
Confidence 333344555443 455677888888888888999999999988886653
No 331
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=33.97 E-value=5.8e+02 Score=26.78 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=9.4
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHH
Q 012816 404 KEKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 404 Kekev~d~~~rv~e~k~RL~~LE 426 (456)
.+....++...+..|..-|..++
T Consensus 341 le~~q~~l~~~l~~~~~~L~~ve 363 (388)
T PF04912_consen 341 LESQQSDLQSQLKKWEELLNKVE 363 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444
No 332
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=33.94 E-value=4.8e+02 Score=25.82 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh-----cCcchhhhhhHHHHHHH
Q 012816 305 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES-----AQIDVDWLRNILNEISE 365 (456)
Q Consensus 305 s~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~-----agfKVDWLekKLeEV~E 365 (456)
...+-..+++.+..+++.+...+-..+...-.......+.+|.. ..+. .|+.+.|.++..
T Consensus 181 ~~~l~~~i~~~l~~~l~~l~~~~~~~lr~~~~~~l~~~i~~L~~d~~~~~~i~-~~~~~~l~~~~~ 245 (367)
T PF04286_consen 181 LDKLAEKIQDELDSLLEKLQEDPDHPLRQEIDQKLRELIERLLTDPELREKIE-ELKDKLLSELIL 245 (367)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCcccHhHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHhhhhhhHH
Confidence 44555666777777777777444344444444444444555544 2222 455555555443
No 333
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.86 E-value=3.1e+02 Score=29.34 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=8.1
Q ss_pred CcchhhhhhHHHHHHHHH
Q 012816 350 QIDVDWLRNILNEISEAI 367 (456)
Q Consensus 350 gfKVDWLekKLeEV~Ear 367 (456)
.++++=|+.+.++++..+
T Consensus 41 ~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 41 QTELEELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 334
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=33.73 E-value=5.5e+02 Score=27.47 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=17.7
Q ss_pred HHHHHHHHHhHHHhcCcchhhhhhHHHHHHHH
Q 012816 335 KVKEMMAVLKDVESAQIDVDWLRNILNEISEA 366 (456)
Q Consensus 335 dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ea 366 (456)
+|.++...+..|. -.|+|+=|+.++.++.+.
T Consensus 8 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~l~~~ 38 (367)
T PRK00578 8 RLKDLDEKLENIR-GVLDVDALKERLEELEAE 38 (367)
T ss_pred HHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHH
Confidence 3555555555554 356666666666666543
No 335
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=33.70 E-value=4.5e+02 Score=25.47 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhh-hHHhHHHHHHHHHHHHHhhhhH
Q 012816 387 LESTKKELESQMNE-LALKEKEVAG-LKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 387 ~e~~kkELEe~l~e-L~qKekev~d-~~~rv~e~k~RL~~LE~ess~L 432 (456)
....+.+.+....+ +.+..++... ...+|.+|.+|+.+|..+...|
T Consensus 57 ~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el 104 (165)
T PF09602_consen 57 LKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQEL 104 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444 2233233333 4557778888888887766665
No 336
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=33.56 E-value=1.9e+02 Score=24.47 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=19.6
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 328 LMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 328 l~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
-+-.+.+||..+.. +..|++.||.|+
T Consensus 36 yR~Y~~~~~~~l~~-I~~lr~~G~~l~ 61 (97)
T cd04782 36 YRYYTLEQFEQLDI-ILLLKELGISLK 61 (97)
T ss_pred CccCCHHHHHHHHH-HHHHHHcCCCHH
Confidence 36788888887766 456999999763
No 337
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=33.55 E-value=3.4e+02 Score=24.97 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 012816 385 NLLESTKKELESQMNELALKEKEVAG-LKESVAKTKARLSDLELESNRLEQIIQATQS 441 (456)
Q Consensus 385 r~~e~~kkELEe~l~eL~qKekev~d-~~~rv~e~k~RL~~LE~ess~L~~~v~~~kS 441 (456)
..++..-..||.++..|.++|.+..+ .+.+-+....+|..+......+...+..++.
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~ 80 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQ 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 338
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=33.46 E-value=1.4e+02 Score=27.19 Aligned_cols=48 Identities=21% Similarity=0.145 Sum_probs=30.1
Q ss_pred HHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 012816 366 AIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKE 413 (456)
Q Consensus 366 are~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~ 413 (456)
+++++++...+++.--..-+.+..+++.+.++++|=.....|-..+|+
T Consensus 3 KkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 3 KKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 345666666666665555566677777777777766666665555433
No 339
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=33.23 E-value=1.7e+02 Score=27.52 Aligned_cols=15 Identities=7% Similarity=0.224 Sum_probs=8.9
Q ss_pred chhhhhhHHHHHHHH
Q 012816 352 DVDWLRNILNEISEA 366 (456)
Q Consensus 352 KVDWLekKLeEV~Ea 366 (456)
||+||+.-+.-+-..
T Consensus 105 ki~~i~~L~~Nmhhl 119 (162)
T PF05983_consen 105 KIEDIRLLFINMHHL 119 (162)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777666554433
No 340
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.20 E-value=5.7e+02 Score=28.33 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=64.4
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhcch--hh---hccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhh
Q 012816 301 CNLESNSMRAYYLECLCSVVQELQSTS--LM---QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQT 375 (456)
Q Consensus 301 f~lKs~~lRs~ymn~Ll~LIetL~ksp--l~---eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~ 375 (456)
.+-++..+.+-|++.|--+|.+|...- |+ --|-+.|.++...++|+- .=.++.+.++.++.+++.- .
T Consensus 206 ~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l------~k~k~~~~~l~~K~~iL~e--k 277 (446)
T KOG4438|consen 206 MKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLL------QKEKSAMVELQEKAKILEE--K 277 (446)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh--H
Confidence 356688889999999999999998654 11 236678888888877775 3478888888888877651 1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012816 376 IDAAKANCVNLLESTKKELESQMNELALKEKEVAG 410 (456)
Q Consensus 376 ~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d 410 (456)
+.-. ..+...+.+..+.+++...++...|..+..
T Consensus 278 v~~~-qti~~e~~~~lk~i~~~~~e~d~~Et~~v~ 311 (446)
T KOG4438|consen 278 VTNL-QTIEKELKALLKKISSDGVEYDSLETKVVE 311 (446)
T ss_pred hHHH-HHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 1111 122333444455555555444444444443
No 341
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=33.14 E-value=3.5e+02 Score=26.96 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=23.6
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 012816 327 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 361 (456)
Q Consensus 327 pl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLe 361 (456)
||+.+-+.|+.++..+.+-|+..-+.+|-.+.|+.
T Consensus 123 pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~ 157 (229)
T cd07594 123 PLRNFLEGDMKTISKERKLLENKRLDLDACKTRVK 157 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566777777777777777777777777664
No 342
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=33.09 E-value=4.8e+02 Score=25.56 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=41.8
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE- 407 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKeke- 407 (456)
+...+..+..+...|.-.... +++=|...|+.+.....- -+..+.+++......++....+|..++.+|...-..
T Consensus 65 q~~~e~~i~~~~~~v~~~~~~--~~~~~~~~l~~L~~ri~~--L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~E 140 (247)
T PF06705_consen 65 QSKFEEQINNMQERVENQISE--KQEQLQSRLDSLNDRIEA--LEEEIQEEKEERPQDIEELNQELVRELNELQEAFENE 140 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544443332 223333333333332221 123333444444455566556666666555543322
Q ss_pred HhhhHHhHHHHHHHHHHHH
Q 012816 408 VAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 408 v~d~~~rv~e~k~RL~~LE 426 (456)
.....+|...+..||.+..
T Consensus 141 r~~R~erE~~i~krl~e~~ 159 (247)
T PF06705_consen 141 RNEREEREENILKRLEEEE 159 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2223344555555555544
No 343
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.04 E-value=2.7e+02 Score=26.05 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=7.6
Q ss_pred HhHHHHHHHHHHHHHh
Q 012816 413 ESVAKTKARLSDLELE 428 (456)
Q Consensus 413 ~rv~e~k~RL~~LE~e 428 (456)
..+++++.+..+|+.|
T Consensus 175 ~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 175 KEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444455555555443
No 344
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=33.02 E-value=6e+02 Score=29.90 Aligned_cols=62 Identities=11% Similarity=0.192 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 383 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 383 ~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
+...+....+++...+.-+..|+.+++|+...+.+.+..+.+|+.........+...+.+.+
T Consensus 231 y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe 292 (786)
T PF05483_consen 231 YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQE 292 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 33455666677777778888889999998889999999999998877766666665555544
No 345
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=32.96 E-value=4.2e+02 Score=24.86 Aligned_cols=27 Identities=7% Similarity=0.160 Sum_probs=21.0
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 327 SLMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 327 pl~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
--+-.+.+||..+ ..+..|.++||.|+
T Consensus 36 gyR~Y~~~dl~rL-~~I~~lr~~G~sL~ 62 (172)
T cd04790 36 NYRLYGERDLERL-EQICAYRSAGVSLE 62 (172)
T ss_pred CCccCCHHHHHHH-HHHHHHHHcCCCHH
Confidence 3477889999888 66677899999654
No 346
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.87 E-value=2e+02 Score=32.22 Aligned_cols=99 Identities=19% Similarity=0.166 Sum_probs=43.9
Q ss_pred chhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 012816 326 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKE 405 (456)
Q Consensus 326 spl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKe 405 (456)
+.+--||++||-+|...--+-. .=|..|=-++..+..+++.....++... ....|...+-||.++..|..+.
T Consensus 406 SDlfvLskdDl~~aL~eYP~a~------~~L~~kgr~iL~kd~lld~~~~~~~~~~--~d~~E~~~~~Le~~~~~l~~Rl 477 (536)
T KOG0500|consen 406 SDLFVLSKDDLWEALSEYPDAR------KRLEEKGRQILHKDGLLDENELGAMQDP--SDDEEKRDESLENEVVLLQLRL 477 (536)
T ss_pred ceeeEeeHHHHHHHHHhCCHHH------HHHHHHHHHHhhhccccchhhhhhccCc--ccchhHHHHHHHHHHHHHHHHH
Confidence 3446688888887765443332 1111221234444443333322221111 0112222222444444443333
Q ss_pred HHHhh-hHHhHHHHHHHHHHHHHhhhhH
Q 012816 406 KEVAG-LKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 406 kev~d-~~~rv~e~k~RL~~LE~ess~L 432 (456)
..+.+ .....+.|+.||..+|+.....
T Consensus 478 ~~i~~e~~~~~~km~qr~~~le~~~~~~ 505 (536)
T KOG0500|consen 478 ARILDEYHSSQQKMKQRLSVLEKQLKPG 505 (536)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHhhhh
Confidence 33222 2335567777777777665554
No 347
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.87 E-value=3.8e+02 Score=24.39 Aligned_cols=25 Identities=0% Similarity=0.242 Sum_probs=17.2
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
+-.+.++|..+. .+..+++.||-|+
T Consensus 36 R~Y~~~~l~~l~-~I~~lr~~G~sL~ 60 (134)
T cd04779 36 RYYDETALDRLQ-LIEHLKGQRLSLA 60 (134)
T ss_pred eeECHHHHHHHH-HHHHHHHCCCCHH
Confidence 456777776554 4466788999776
No 348
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=32.77 E-value=1.1e+03 Score=30.92 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=21.3
Q ss_pred HHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 012816 337 KEMMAVLKDVESAQIDVDWLRNILNEISEAIE 368 (456)
Q Consensus 337 ~ea~~~L~dL~~agfKVDWLekKLeEV~Eare 368 (456)
..-.+.-.-+..+..+++=|+.+|+|-.+++.
T Consensus 1315 r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~ 1346 (1930)
T KOG0161|consen 1315 REKSALENALRQLEHELDLLREQLEEEQEAKN 1346 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444556667778888888888877764
No 349
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.70 E-value=1.3e+02 Score=31.59 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHH
Q 012816 414 SVAKTKARLSDLEL 427 (456)
Q Consensus 414 rv~e~k~RL~~LE~ 427 (456)
++..+..+|.+||.
T Consensus 173 ~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 173 RIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444443
No 350
>PF13166 AAA_13: AAA domain
Probab=32.45 E-value=7.3e+02 Score=27.52 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=26.0
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 402 ALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 402 ~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
...++++..++..+......+.+|+.....+...+..+-..+..|
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 427 NSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334444444555566666666666666555555556666666666
No 351
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=32.32 E-value=7.7e+02 Score=30.15 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=4.7
Q ss_pred CCCcceeecc
Q 012816 242 DGSRNFSFSG 251 (456)
Q Consensus 242 ~es~~Fs~~~ 251 (456)
-+|.|-|+..
T Consensus 262 ~SSRSHsIFs 271 (1041)
T KOG0243|consen 262 QSSRSHSIFS 271 (1041)
T ss_pred hccccceEEE
Confidence 3455544443
No 352
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.30 E-value=8.7e+02 Score=28.32 Aligned_cols=10 Identities=40% Similarity=0.584 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 012816 392 KELESQMNEL 401 (456)
Q Consensus 392 kELEe~l~eL 401 (456)
+++++.+.+|
T Consensus 584 ~~~~~~i~~l 593 (782)
T PRK00409 584 KEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 353
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=32.26 E-value=7.8e+02 Score=30.27 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 012816 394 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 439 (456)
Q Consensus 394 LEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~ 439 (456)
+...+....|..++..+++.+|..+..+|.+-.++.+++...+..+
T Consensus 469 ~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~el 514 (1195)
T KOG4643|consen 469 LDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNEL 514 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666777777777777777777777777777775544443
No 354
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.12 E-value=3e+02 Score=22.92 Aligned_cols=9 Identities=22% Similarity=0.143 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 012816 415 VAKTKARLS 423 (456)
Q Consensus 415 v~e~k~RL~ 423 (456)
-.+|.+||.
T Consensus 55 ~~~~~~rl~ 63 (72)
T PF06005_consen 55 RNAWQERLR 63 (72)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 355
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=32.10 E-value=1.3e+02 Score=35.40 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh-------HHhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 012816 392 KELESQMNELALKEKEVAGL-------KESVAKTKARLSDLELESNRLEQIIQATQS 441 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d~-------~~rv~e~k~RL~~LE~ess~L~~~v~~~kS 441 (456)
++++....++...++.+..- .+.++.-+++|.+++.+...|.+.|..++.
T Consensus 936 K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 936 KKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444331 256677899999999999999998888773
No 356
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.95 E-value=8.8e+02 Score=28.32 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=9.5
Q ss_pred HHhcCcchhhhhhHHHHH
Q 012816 346 VESAQIDVDWLRNILNEI 363 (456)
Q Consensus 346 L~~agfKVDWLekKLeEV 363 (456)
+...-=++.||...+.++
T Consensus 331 ~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 331 LEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344456666666655
No 357
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=31.91 E-value=3e+02 Score=23.37 Aligned_cols=25 Identities=4% Similarity=0.163 Sum_probs=17.5
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
+..+.+||..+.. +..|.+.||.++
T Consensus 37 R~Y~~~dl~~l~~-I~~l~~~G~~l~ 61 (102)
T cd04775 37 RLYSEADLSRLEK-IVFLQAGGLPLE 61 (102)
T ss_pred eeeCHHHHHHHHH-HHHHHHCCCCHH
Confidence 5678888885544 445788999554
No 358
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=31.90 E-value=7.1e+02 Score=27.22 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhhH
Q 012816 419 KARLSDLELESNRL 432 (456)
Q Consensus 419 k~RL~~LE~ess~L 432 (456)
.+||.+|+....+|
T Consensus 374 ~~~~~~l~~~~~~~ 387 (582)
T PF09731_consen 374 NGRLAKLAELNSRL 387 (582)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555544
No 359
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=31.70 E-value=8e+02 Score=27.75 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=12.6
Q ss_pred ccccCcccchhHHHHHHHHHHHHH
Q 012816 297 IAANCNLESNSMRAYYLECLCSVV 320 (456)
Q Consensus 297 IAsnf~lKs~~lRs~ymn~Ll~LI 320 (456)
|...|.-.+|.+=....|.|...-
T Consensus 157 i~Is~~~~dP~~Aa~iaN~la~~Y 180 (754)
T TIGR01005 157 IAIEFRSEDPKLAAAIPDAIAAAY 180 (754)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHH
Confidence 334455556665555555555443
No 360
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.70 E-value=4e+02 Score=24.23 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=7.8
Q ss_pred HHhHHHHHHHHHHHHHhhhh
Q 012816 412 KESVAKTKARLSDLELESNR 431 (456)
Q Consensus 412 ~~rv~e~k~RL~~LE~ess~ 431 (456)
+.+|.+...++..++.....
T Consensus 151 ~~~i~~~e~~~~~~~~~~~~ 170 (218)
T cd07596 151 EEELEEAESALEEARKRYEE 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333
No 361
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=31.69 E-value=4.7e+02 Score=30.81 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhcch
Q 012816 310 AYYLECLCSVVQELQSTS 327 (456)
Q Consensus 310 s~ymn~Ll~LIetL~ksp 327 (456)
.+|+..|++.++.+-+..
T Consensus 129 ~al~~~i~~~~~~~~~l~ 146 (782)
T COG0466 129 EALVRSILSEFEEYAKLN 146 (782)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455555666666555444
No 362
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=31.68 E-value=18 Score=26.72 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.3
Q ss_pred hHHHHHHHhhcccccccCcc
Q 012816 284 SSILQSIISRYGDIAANCNL 303 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l 303 (456)
...+..|.++||||+..+.-
T Consensus 16 ~~lL~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 16 QSLLQSLCERHPEIQQEIRS 35 (38)
T ss_dssp HHHHHHHHHHSTHHHHHHHT
T ss_pred HHHHHHHHHhChhHHHHHHh
Confidence 46889999999999976543
No 363
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.65 E-value=2.2e+02 Score=33.77 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHH
Q 012816 332 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEISE 365 (456)
Q Consensus 332 S~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~E 365 (456)
-+-++..+.++=.+|+. .=+|.|=+-|..|+.-
T Consensus 391 rkkeie~rEaar~ElEk-qRqlewErar~qem~~ 423 (1118)
T KOG1029|consen 391 RKKEIERREAAREELEK-QRQLEWERARRQEMLN 423 (1118)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 34456666666666664 3467888888877753
No 364
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=31.63 E-value=3.8e+02 Score=26.98 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=17.7
Q ss_pred ccCcccchhHHHHHHHHHH---HHHHHHhcch
Q 012816 299 ANCNLESNSMRAYYLECLC---SVVQELQSTS 327 (456)
Q Consensus 299 snf~lKs~~lRs~ymn~Ll---~LIetL~ksp 327 (456)
.++..| ..||..-+.+|+ .|+..|-..|
T Consensus 71 ~~~d~K-~ELRkLnrslllnfleL~~ILi~~P 101 (223)
T KOG0570|consen 71 NNYDYK-KELRKLNRSLLLNFLELLDILIRAP 101 (223)
T ss_pred ccccHH-HHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 455555 677776666655 4566666777
No 365
>PLN02372 violaxanthin de-epoxidase
Probab=31.62 E-value=4.9e+02 Score=28.78 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHH
Q 012816 412 KESVAKTKARLSDLELESNRLEQIIQA 438 (456)
Q Consensus 412 ~~rv~e~k~RL~~LE~ess~L~~~v~~ 438 (456)
++.-.+-++-|.+|.|+.+++++.+..
T Consensus 424 ~~lskee~~~l~~~~~~~~~vek~f~~ 450 (455)
T PLN02372 424 KELSKEEKELLEKLKMEASEVEKLFGR 450 (455)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455556677788888888776643
No 366
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=31.48 E-value=22 Score=32.18 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 012816 384 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLS 423 (456)
Q Consensus 384 dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~ 423 (456)
...+..+.+++++....+.++..++...+.|...-..++.
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~ 56 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAK 56 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666777777766666655444433
No 367
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.39 E-value=3.2e+02 Score=23.30 Aligned_cols=26 Identities=0% Similarity=0.318 Sum_probs=21.0
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 328 LMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 328 l~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
-+-.+++||..+. .+..|.+.||-++
T Consensus 36 ~R~Y~~~~l~~l~-~I~~l~~~G~~l~ 61 (102)
T cd04789 36 YRLYPDSDLQRLL-LIQQLQAGGLSLK 61 (102)
T ss_pred CeeCCHHHHHHHH-HHHHHHHCCCCHH
Confidence 4678889998666 7888999999774
No 368
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=31.29 E-value=5.2e+02 Score=27.46 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHH
Q 012816 390 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 433 (456)
Q Consensus 390 ~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~ 433 (456)
+.++......+|+..+.+.......|++....|.++-++...+.
T Consensus 271 l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 271 LIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444433
No 369
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.23 E-value=2e+02 Score=28.17 Aligned_cols=19 Identities=11% Similarity=0.408 Sum_probs=11.0
Q ss_pred hHHHHHHHhhcccccccCc
Q 012816 284 SSILQSIISRYGDIAANCN 302 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~ 302 (456)
+..++.+..+|+-...+..
T Consensus 65 ~~~i~~~~~~~gG~i~~~~ 83 (262)
T PF14257_consen 65 VKKIENLVESYGGYIESSS 83 (262)
T ss_pred HHHHHHHHHHcCCEEEEEe
Confidence 4556666777765444443
No 370
>PTZ00046 rifin; Provisional
Probab=30.96 E-value=1.3e+02 Score=32.17 Aligned_cols=77 Identities=19% Similarity=0.124 Sum_probs=45.8
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHH-HHHHhhhhHHHHH-----------H
Q 012816 370 STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLS-DLELESNRLEQII-----------Q 437 (456)
Q Consensus 370 ~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~-~LE~ess~L~~~v-----------~ 437 (456)
+|-..+++...++-++.-..+=+|.+|.|.+=+|++||-+|-.-+-==.|++|. +|..+.+.|+..| .
T Consensus 51 YDNDPeMK~Vme~F~rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKDKlEKeL~ekf~tL~TdI~tddIPTCVCEK 130 (358)
T PTZ00046 51 YDNDPEMKSVMENFDRQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKDKLEKELMEKFATLQTDIQSDAIPTCVCEK 130 (358)
T ss_pred CCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhhhcccCCccccCccccccc
Confidence 455556666667776666666688888888888888888882111111244442 3444444443333 2
Q ss_pred Hhhhhhhhc
Q 012816 438 ATQSKVTKF 446 (456)
Q Consensus 438 ~~kSKV~kf 446 (456)
++--||+|+
T Consensus 131 SlADKvEK~ 139 (358)
T PTZ00046 131 SLADKVEKG 139 (358)
T ss_pred hHHHHHHHH
Confidence 566688776
No 371
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=30.87 E-value=4.8e+02 Score=24.91 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=30.7
Q ss_pred hHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcch
Q 012816 284 SSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS 327 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~ksp 327 (456)
++....-|---|.|+++|.+++| .+...-|=.||..|+..+
T Consensus 21 le~~~e~~~~Lgl~vs~F~~tsq---~~L~qrl~tLv~~L~~l~ 61 (147)
T KOG3046|consen 21 LEKFLENFRQLGLIVSNFQPTSQ---DALNQRLNTLVRGLQDLD 61 (147)
T ss_pred HHHHHHHHHHHhHhhhcCCCCcH---HHHHHHHHHHHHHhhhhH
Confidence 33334445567999999999999 777777778888877665
No 372
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.67 E-value=5.5e+02 Score=25.56 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcch----hhhhhHHHHHHHHHHhh
Q 012816 308 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDV----DWLRNILNEISEAIEFS 370 (456)
Q Consensus 308 lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKV----DWLekKLeEV~Eare~~ 370 (456)
++++++-.+=.+|+.+-.+ +.+-+--+.+|...|..++..=-++ -=|+.+|++...-.+.+
T Consensus 7 ~~~~~~a~~~~~~dk~EDp--~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~ 71 (225)
T COG1842 7 LKDLVKANINELLDKAEDP--EKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL 71 (225)
T ss_pred HHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666554 3666666667776666665432221 23445555554444333
No 373
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=30.56 E-value=1.1e+02 Score=24.07 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=20.0
Q ss_pred hhhHHhHHHHHHHHHHHHHhhhhHHH
Q 012816 409 AGLKESVAKTKARLSDLELESNRLEQ 434 (456)
Q Consensus 409 ~d~~~rv~e~k~RL~~LE~ess~L~~ 434 (456)
..++.+++++.++|.+|+.-.+.-.+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999877776544
No 374
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.47 E-value=4.3e+02 Score=28.00 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=11.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q 012816 380 KANCVNLLESTKKELESQMNELALK 404 (456)
Q Consensus 380 Ke~~dr~~e~~kkELEe~l~eL~qK 404 (456)
.+.|-..+...++.|.+..+.|.+.
T Consensus 34 Q~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 34 QDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444
No 375
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=30.37 E-value=6.3e+02 Score=26.15 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 012816 391 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 391 kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~k 440 (456)
++.|..++..|..+. --..|+..++..|+++|.+..--+.-|.+++
T Consensus 147 r~~l~d~I~kLk~k~----P~s~kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 147 RRKLQDEIAKLKYKD----PQSPKLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHHHHHHHHHH-----TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 345555554443332 1345778888888888887777666665554
No 376
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=30.36 E-value=1.9e+02 Score=30.35 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=43.0
Q ss_pred cccccccCc-ccchhHHHHHHHHHHHHHHHHhcchhhhccHH---HHHHHHHHHhHHHhcCcchhhhhhHHHHHH
Q 012816 294 YGDIAANCN-LESNSMRAYYLECLCSVVQELQSTSLMQMTKA---KVKEMMAVLKDVESAQIDVDWLRNILNEIS 364 (456)
Q Consensus 294 HpDIAsnf~-lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~---dL~ea~~~L~dL~~agfKVDWLekKLeEV~ 364 (456)
|||+..... +++-.+|..+.+..-.|+..+.... -+|.+. ...++++.|.+.++++ .|++.|+|+.
T Consensus 142 h~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~-pdla~ay~akqkkl~~kl~~hdd~s----~lkkild~l~ 211 (325)
T KOG4420|consen 142 HPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEE-PDLAEAYLAKQKKLMAKLLEHDDVS----YLKKILDELA 211 (325)
T ss_pred cchhhccccCcccHHHHHHHHHHHHHHHHHHhhcC-chhhHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHH
Confidence 777776655 4567899999999988888776552 233332 3445566666666555 5666666553
No 377
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=30.33 E-value=6.6e+02 Score=29.15 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=41.2
Q ss_pred HHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHh
Q 012816 318 SVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF 369 (456)
Q Consensus 318 ~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~ 369 (456)
-.++++...- .+.+..=|..+=.++.|+..+.-++.=|+.++..|.+..+-
T Consensus 45 l~~qe~~~~l-e~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~ 95 (766)
T PF10191_consen 45 LYSQEVNASL-EETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKA 95 (766)
T ss_pred HHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555554 77788888888899999999999999999999999987643
No 378
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=30.16 E-value=3.8e+02 Score=26.50 Aligned_cols=33 Identities=15% Similarity=0.392 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 012816 332 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 332 S~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ear 367 (456)
|.+|+.....-|.-|+ +|||=|+..|+++-+..
T Consensus 70 Sr~DiarvA~lvinlE---~kvD~lee~fdd~~d~l 102 (189)
T TIGR02132 70 TKEDIANVASLVINLE---EKVDLIEEFFDDKFDEL 102 (189)
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4555555555554444 46666666666555444
No 379
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=30.13 E-value=4e+02 Score=23.75 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=17.7
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 328 LMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 328 l~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
-+-.+.+||..+..+ ..|++.||-|.
T Consensus 37 yR~Y~~~~l~~l~~I-~~lr~~G~sl~ 62 (131)
T TIGR02043 37 YRLYTDEDQKRLRFI-LKAKELGFTLD 62 (131)
T ss_pred ceecCHHHHHHHHHH-HHHHHcCCCHH
Confidence 366777887766544 45888999653
No 380
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=30.09 E-value=4.5e+02 Score=27.89 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcc---hhhhhhHHHHHHHHHHhhhhhhhHHHHHH
Q 012816 312 YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQID---VDWLRNILNEISEAIEFSTQHQTIDAAKA 381 (456)
Q Consensus 312 ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfK---VDWLekKLeEV~Eare~~~~~~~~e~eKe 381 (456)
||+.|-.+|...+... +--.+.|.++...+ ++.+.++ |.=|..+++.+.+..+-+...-+++++..
T Consensus 84 ~~~~l~~~v~d~~rri--~~~kerL~e~~ee~--~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~ 152 (319)
T KOG0796|consen 84 ALEILERFVADVDRRI--EKAKERLAETVEER--SEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQK 152 (319)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 8999999999988773 22334444443222 2333343 66677777777777766666555555543
No 381
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=30.06 E-value=2.7e+02 Score=24.81 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=6.5
Q ss_pred hhHHHHHHHhhhhhhh
Q 012816 430 NRLEQIIQATQSKVTK 445 (456)
Q Consensus 430 s~L~~~v~~~kSKV~k 445 (456)
..|+.+|..|..+|++
T Consensus 99 ~~L~~RI~~Le~~l~~ 114 (118)
T TIGR01837 99 EALSAKIEQLAVQVEE 114 (118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 382
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=29.66 E-value=6.4e+02 Score=26.01 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 012816 333 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG-- 410 (456)
Q Consensus 333 ~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d-- 410 (456)
+..|..+.+...+|+ +-||=|+++|+...--+ .-..+++++...-..++.....|..+=++|.+.-+++-+
T Consensus 133 dq~L~~I~sqQ~ELE---~~L~~lE~k~~~~~g~~----~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~ 205 (254)
T KOG2196|consen 133 DQELEFILSQQQELE---DLLDPLETKLELQSGHT----YLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMS 205 (254)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhccccch----hhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 445666666666666 34677777777632211 022333444433333444444444333444444333322
Q ss_pred -----------hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 012816 411 -----------LKESVAKTKARLSDLELESNRLEQIIQATQS 441 (456)
Q Consensus 411 -----------~~~rv~e~k~RL~~LE~ess~L~~~v~~~kS 441 (456)
+..-+-++...|.-|+.-++.|++.+..++-
T Consensus 206 ~~~d~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i~K 247 (254)
T KOG2196|consen 206 KTVDKTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKIKK 247 (254)
T ss_pred CccccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 2223356678888888888888888877763
No 383
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=29.60 E-value=4.9e+02 Score=29.20 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 012816 319 VVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQM 398 (456)
Q Consensus 319 LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l 398 (456)
.|+.|+.+. -.|++|.+|+.-+. -+....-.+|..++..||+.+
T Consensus 332 ~IqdLq~sN--------------------------~yLe~kvkeLQ~k~----------~kQqvfvDiinkLk~niEeLI 375 (527)
T PF15066_consen 332 RIQDLQCSN--------------------------LYLEKKVKELQMKI----------TKQQVFVDIINKLKENIEELI 375 (527)
T ss_pred HHHHhhhcc--------------------------HHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHH--HhhhhHHHHHHHhhhh
Q 012816 399 NELALKEKEVAGLKESVAKTKARLSDLE--LESNRLEQIIQATQSK 442 (456)
Q Consensus 399 ~eL~qKekev~d~~~rv~e~k~RL~~LE--~ess~L~~~v~~~kSK 442 (456)
++=-..-.|-.|+...+....+-|.+.+ +.-++.++-.+-+..|
T Consensus 376 edKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelk 421 (527)
T PF15066_consen 376 EDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELK 421 (527)
T ss_pred HhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 384
>PRK10698 phage shock protein PspA; Provisional
Probab=29.56 E-value=5.5e+02 Score=25.19 Aligned_cols=8 Identities=13% Similarity=-0.060 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 012816 414 SVAKTKAR 421 (456)
Q Consensus 414 rv~e~k~R 421 (456)
|-..+.+|
T Consensus 135 k~~~L~aR 142 (222)
T PRK10698 135 RQQALMLR 142 (222)
T ss_pred HHHHHHHH
Confidence 33333333
No 385
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.22 E-value=2.4e+02 Score=30.24 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 012816 385 NLLESTKKELESQMNELALKEKEVAGLKESVAKT 418 (456)
Q Consensus 385 r~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~ 418 (456)
..+..-.+||+.+.+.|.|....++....-+..|
T Consensus 242 EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k 275 (365)
T KOG2391|consen 242 EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSK 275 (365)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3566677999999999988887777633333333
No 386
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.18 E-value=3.7e+02 Score=29.48 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=11.4
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHHH
Q 012816 411 LKESVAKTKARLSDLELESNRLEQ 434 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~ess~L~~ 434 (456)
+.+.+.+++.+|..++.....++.
T Consensus 73 l~~e~~~l~~~l~~~e~~~~~~~~ 96 (429)
T COG0172 73 LIAEVKELKEKLKELEAALDELEA 96 (429)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHH
Confidence 344444455555555544444433
No 387
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=29.08 E-value=4.2e+02 Score=26.37 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 427 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ 427 (456)
.+.++..++..+..+...++.++..|+.++.+.+..+.....
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKE 124 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555666666665555555554444443
No 388
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=28.98 E-value=1.5e+02 Score=33.03 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=10.6
Q ss_pred HHHHHhhhhHHHHHH
Q 012816 423 SDLELESNRLEQIIQ 437 (456)
Q Consensus 423 ~~LE~ess~L~~~v~ 437 (456)
.+|||+..+|.+.++
T Consensus 611 ~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 611 SNLEMEIEKLKKAVL 625 (627)
T ss_pred hhhHhhHHHHHHHhh
Confidence 367788888877654
No 389
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.87 E-value=2.1e+02 Score=24.73 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=18.4
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchhhh
Q 012816 328 LMQMTKAKVKEMMAVLKDVESAQIDVDWL 356 (456)
Q Consensus 328 l~eLS~~dL~ea~~~L~dL~~agfKVDWL 356 (456)
-+..+..||..+. .+..|.+.||-++=+
T Consensus 35 ~R~Y~~~~~~~l~-~I~~lr~~G~sl~eI 62 (112)
T cd01282 35 YRDYDEAAVDRVR-QIRRLLAAGLTLEEI 62 (112)
T ss_pred CeecCHHHHHHHH-HHHHHHHcCCCHHHH
Confidence 3667777776554 555678899965433
No 390
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.83 E-value=3.9e+02 Score=26.46 Aligned_cols=43 Identities=28% Similarity=0.402 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES 429 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~es 429 (456)
.|++-.++|.++| .+.+.++++.+++..+..+++||..+....
T Consensus 104 ~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 104 YVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555543 345566667777777777777777765443
No 391
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=28.79 E-value=2.5e+02 Score=30.14 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=7.1
Q ss_pred HhHHHHHHHHHHHHHh
Q 012816 413 ESVAKTKARLSDLELE 428 (456)
Q Consensus 413 ~rv~e~k~RL~~LE~e 428 (456)
+.+.+.+.++..||.+
T Consensus 83 ~Ei~~~~~~~~~le~~ 98 (363)
T COG0216 83 EEIKELEAKIEELEEE 98 (363)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 392
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=28.68 E-value=72 Score=26.13 Aligned_cols=29 Identities=48% Similarity=0.485 Sum_probs=22.2
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 012816 407 EVAGLKESVAKTKARLSDLELESNRLEQI 435 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~ess~L~~~ 435 (456)
||.-+|++|.+..+|..+||.+..-|.+.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44456778888888999998888887553
No 393
>COG1422 Predicted membrane protein [Function unknown]
Probab=28.52 E-value=1.9e+02 Score=28.67 Aligned_cols=21 Identities=0% Similarity=-0.048 Sum_probs=14.0
Q ss_pred cchhHHHHHHHHHHHHHHHHh
Q 012816 304 ESNSMRAYYLECLCSVVQELQ 324 (456)
Q Consensus 304 Ks~~lRs~ymn~Ll~LIetL~ 324 (456)
.++++-=..+-+|.+++-++-
T Consensus 44 ~~p~lvilV~avi~gl~~~i~ 64 (201)
T COG1422 44 LPPHLVILVAAVITGLYITIL 64 (201)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 566666666777777766653
No 394
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.51 E-value=3.4e+02 Score=22.39 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 012816 390 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDL 425 (456)
Q Consensus 390 ~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~L 425 (456)
+.+|=+.-+..|..+..++.+++..++..+..|..+
T Consensus 31 L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 31 LRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444555555666666656666655555443
No 395
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.44 E-value=2.2e+02 Score=24.32 Aligned_cols=15 Identities=7% Similarity=0.209 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhHHHh
Q 012816 334 AKVKEMMAVLKDVES 348 (456)
Q Consensus 334 ~dL~ea~~~L~dL~~ 348 (456)
.++..+..+|..|..
T Consensus 30 ~e~~~~~~~l~~l~~ 44 (129)
T cd00890 30 TEYEKAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHhhc
Confidence 455566666666653
No 396
>PLN02281 chlorophyllide a oxygenase
Probab=28.44 E-value=1.8e+02 Score=32.65 Aligned_cols=58 Identities=22% Similarity=0.274 Sum_probs=42.6
Q ss_pred hhhHHHHHH--HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 012816 356 LRNILNEIS--EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 428 (456)
Q Consensus 356 LekKLeEV~--Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~e 428 (456)
|+.|..||+ .+|++ +-++++++||-...+||++.-.+|---..|+.-.-.+|+++|.-
T Consensus 105 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (536)
T PLN02281 105 LHDKVVDVLNPLAREY---------------KSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEEL 164 (536)
T ss_pred HhHHHHHHhhhHHHhh---------------hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 566677666 34433 35778888888888888888888777677888888888887743
No 397
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=28.43 E-value=1e+03 Score=27.90 Aligned_cols=57 Identities=25% Similarity=0.266 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 442 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSK 442 (456)
..+.++.++++-...|.+.+..+.+.+..+...+..+.+||.+-.+|...+..+++.
T Consensus 567 ~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 567 SLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444566666666677777777777777888888888888888887777666654
No 398
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=28.43 E-value=1.1e+02 Score=29.62 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=27.9
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 407 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
++.++..++.++++++-++..+...+.++..-=+-+..+|....|+.+||
T Consensus 44 ~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlL 93 (193)
T COG0576 44 EIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLL 93 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666666666666555555555555665555555554
No 399
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=28.28 E-value=4.9e+02 Score=27.48 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHH
Q 012816 356 LRNILNEISEAIE 368 (456)
Q Consensus 356 LekKLeEV~Eare 368 (456)
|++|+.|..+++.
T Consensus 249 l~~Ri~et~~ak~ 261 (384)
T PF03148_consen 249 LRKRIHETQEAKN 261 (384)
T ss_pred HHHHHHHHHHHHH
Confidence 6888888888884
No 400
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.28 E-value=4.4e+02 Score=28.24 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=10.9
Q ss_pred hccHHHHHHHHHHHhHHHhcCc
Q 012816 330 QMTKAKVKEMMAVLKDVESAQI 351 (456)
Q Consensus 330 eLS~~dL~ea~~~L~dL~~agf 351 (456)
+-+.+..-+.|.. .-|+.+||
T Consensus 288 eqTHtrhYElyRr-~kL~~Mgf 308 (406)
T KOG3859|consen 288 EQTHTRHYELYRR-CKLEEMGF 308 (406)
T ss_pred hhccccchHHHHH-HHHHHcCC
Confidence 3344555555543 23666776
No 401
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.22 E-value=2.7e+02 Score=24.71 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHh
Q 012816 414 SVAKTKARLSDLELESNRLEQIIQAT 439 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v~~~ 439 (456)
.+.++-+.=.+|.++...|..+|..+
T Consensus 30 ~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 30 QLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555444444433
No 402
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.16 E-value=95 Score=29.77 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=9.0
Q ss_pred hhhhhHHHHHHHHH
Q 012816 354 DWLRNILNEISEAI 367 (456)
Q Consensus 354 DWLekKLeEV~Ear 367 (456)
.=|+.||+.+.|..
T Consensus 3 eD~EsklN~AIERn 16 (166)
T PF04880_consen 3 EDFESKLNQAIERN 16 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34677777666665
No 403
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=28.15 E-value=9.2e+02 Score=27.34 Aligned_cols=102 Identities=21% Similarity=0.293 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHHHhHHHhcCcchhh--------hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH-
Q 012816 331 MTKAKVKEMMAVLKDVESAQIDVDW--------LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNEL- 401 (456)
Q Consensus 331 LS~~dL~ea~~~L~dL~~agfKVDW--------LekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL- 401 (456)
+-++-+......|.||.+-=.-|.| |..||.++.- ++-......-+.-+.+...++...++|.++++.|
T Consensus 348 ile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~--e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~Lp 425 (531)
T PF15450_consen 348 ILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKN--EWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLP 425 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444455555666553223333 5555555532 2222222222333333334444444444444333
Q ss_pred ------HHHHHHHhh-hHHhH-HHHHHHHHHHHHhhhhHHH
Q 012816 402 ------ALKEKEVAG-LKESV-AKTKARLSDLELESNRLEQ 434 (456)
Q Consensus 402 ------~qKekev~d-~~~rv-~e~k~RL~~LE~ess~L~~ 434 (456)
..++.=++. ...|| ++.++|--+..+....|..
T Consensus 426 qqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~ 466 (531)
T PF15450_consen 426 QQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELAT 466 (531)
T ss_pred HHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 333333332 23455 5666666666555555544
No 404
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=28.14 E-value=2.7e+02 Score=26.96 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhc
Q 012816 307 SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESA 349 (456)
Q Consensus 307 ~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~a 349 (456)
.--..||.-|++++-+|...-+..++..|+..+...+..|++.
T Consensus 109 v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~~~~i~~fm~~l 151 (204)
T PRK14562 109 VPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLEIMEEI 151 (204)
T ss_pred CCHHHHHhHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3456899999999999999999999999998888888777753
No 405
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=28.14 E-value=3e+02 Score=25.06 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhhhH
Q 012816 416 AKTKARLSDLELESNRL 432 (456)
Q Consensus 416 ~e~k~RL~~LE~ess~L 432 (456)
.+.++|+-+|+....+|
T Consensus 86 ~~l~~rvd~Lerqv~~L 102 (108)
T COG3937 86 DELTERVDALERQVADL 102 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555544444
No 406
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.08 E-value=8.3e+02 Score=30.07 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 392 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
.+|+.+-..|.+.+.|+.-....+.+..-+|.+++++..+.+.++..|+-++.+
T Consensus 697 ~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ 750 (1141)
T KOG0018|consen 697 LDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNK 750 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444433344444444444444444444444444444433
No 407
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=27.98 E-value=3.9e+02 Score=24.29 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHH
Q 012816 414 SVAKTKARLSDLE 426 (456)
Q Consensus 414 rv~e~k~RL~~LE 426 (456)
.++++..|+.+||
T Consensus 127 ~~~~~~~riaEle 139 (139)
T PF13935_consen 127 EIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHHhcC
Confidence 4455666666664
No 408
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=27.94 E-value=6.7e+02 Score=25.64 Aligned_cols=24 Identities=8% Similarity=-0.134 Sum_probs=17.0
Q ss_pred ccccCcccchhHHHHHHHHHHHHH
Q 012816 297 IAANCNLESNSMRAYYLECLCSVV 320 (456)
Q Consensus 297 IAsnf~lKs~~lRs~ymn~Ll~LI 320 (456)
|...+.-.+|.+=....|.|+...
T Consensus 133 i~I~~~~~dP~~A~~ian~l~~~~ 156 (362)
T TIGR01010 133 LTLNVTAFDAEEAQKINQRLLKEG 156 (362)
T ss_pred EEEEEEecCHHHHHHHHHHHHHHH
Confidence 455677778888887777777643
No 409
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=27.88 E-value=4.4e+02 Score=25.48 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=10.2
Q ss_pred HHhhhhhhhccccchhhhc
Q 012816 437 QATQSKVTKFSQKSLADEI 455 (456)
Q Consensus 437 ~~~kSKV~kf~~kSl~D~l 455 (456)
..++..+++..-.+.+||.
T Consensus 126 ~~~~~~~~~~~i~AP~~G~ 144 (322)
T TIGR01730 126 ASAQLNLRYTEIRAPFDGT 144 (322)
T ss_pred HHHHHhhccCEEECCCCcE
Confidence 3344455555556666654
No 410
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.74 E-value=7.4e+02 Score=26.11 Aligned_cols=87 Identities=18% Similarity=0.310 Sum_probs=48.4
Q ss_pred cchhhhhhHHHHHHHHH-HhhhhhhhHHHHHHhhH------------------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012816 351 IDVDWLRNILNEISEAI-EFSTQHQTIDAAKANCV------------------NLLESTKKELESQMNELALKEKEVAGL 411 (456)
Q Consensus 351 fKVDWLekKLeEV~Ear-e~~~~~~~~e~eKe~~d------------------r~~e~~kkELEe~l~eL~qKekev~d~ 411 (456)
|-++-|..||..+-+.- .+-...+.++.+....+ ..|..+-.||..+.+++.+-+.+|.-+
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899988765332 22222333332211110 112222356666666666666777777
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHH
Q 012816 412 KESVAKTKARLSDLELESNRLEQIIQ 437 (456)
Q Consensus 412 ~~rv~e~k~RL~~LE~ess~L~~~v~ 437 (456)
..+|.+...|+..+=.+...|.+.+.
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 77777777777776666666666553
No 411
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.64 E-value=6.1e+02 Score=26.74 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 417 KTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 417 e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
...+...+.+.+.+.|--.|.+++.|++.
T Consensus 224 ~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~ 252 (306)
T PF04849_consen 224 RKTEENRRQQEEITSLLSQIVDLQQRCKQ 252 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444443
No 412
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=27.63 E-value=6.1e+02 Score=25.06 Aligned_cols=29 Identities=21% Similarity=0.183 Sum_probs=20.0
Q ss_pred HHHHHHHHHhHHHhcCcchhhhhhHHHHH
Q 012816 335 KVKEMMAVLKDVESAQIDVDWLRNILNEI 363 (456)
Q Consensus 335 dL~ea~~~L~dL~~agfKVDWLekKLeEV 363 (456)
|+.++..+.+-|+..-+.+|-.+.||...
T Consensus 112 ~~k~i~k~RKkLe~rRLdyD~~ksk~~ka 140 (215)
T cd07593 112 EMKEYHSARKKLESRRLAYDAALTKSQKA 140 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66677777777777777777777666543
No 413
>PLN02943 aminoacyl-tRNA ligase
Probab=27.29 E-value=1.6e+02 Score=34.72 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-------HHhHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 012816 391 KKELESQMNELALKEKEVAGL-------KESVAKTKARLSDLELESNRLEQIIQATQS 441 (456)
Q Consensus 391 kkELEe~l~eL~qKekev~d~-------~~rv~e~k~RL~~LE~ess~L~~~v~~~kS 441 (456)
.++|++...++.+.++.+..- .+.++.-+++|.+++.+...|.+.|..+++
T Consensus 895 ~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 895 SKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444445555555554431 256677788999999999998888877764
No 414
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=27.26 E-value=6.9e+02 Score=28.06 Aligned_cols=123 Identities=23% Similarity=0.306 Sum_probs=66.3
Q ss_pred ccchHHHHHHHhhcccccccC---ccc-ch-----hHHHHHHHHHHHHHHHHhcch-----hhhccHHHHHHHHHHHhHH
Q 012816 281 ASISSILQSIISRYGDIAANC---NLE-SN-----SMRAYYLECLCSVVQELQSTS-----LMQMTKAKVKEMMAVLKDV 346 (456)
Q Consensus 281 ~Sqv~iV~~IFeKHpDIAsnf---~lK-s~-----~lRs~ymn~Ll~LIetL~ksp-----l~eLS~~dL~ea~~~L~dL 346 (456)
.-|..+|++|++-.-||...= .+. ++ ..+.--|+-|-..|++||++- |.++=.+|+.-|...|.
T Consensus 440 daqG~LVqkIlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~-- 517 (583)
T KOG3809|consen 440 DAQGALVQKILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELE-- 517 (583)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHH--
Confidence 345789999999877764321 111 11 122235888999999999875 22333333333333222
Q ss_pred HhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816 347 ESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 347 ~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE 426 (456)
-|- .+.++ ..+.+..++....-.. |-....|++.+++++|.++.|-+.++|+-+-|
T Consensus 518 -------mWr-------se~rq---~~~elq~eq~~t~~a~-------epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne 573 (583)
T KOG3809|consen 518 -------MWR-------SEQRQ---NEQELQNEQAATFGAS-------EPLYNILANLQKEINDTKEEISKARGRILNNE 573 (583)
T ss_pred -------HHH-------HHHHH---hHHHHHhhhhcccccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 121 11111 0111111111111112 22356788889999999999999998886655
Q ss_pred Hhh
Q 012816 427 LES 429 (456)
Q Consensus 427 ~es 429 (456)
...
T Consensus 574 ~rI 576 (583)
T KOG3809|consen 574 KRI 576 (583)
T ss_pred HHH
Confidence 443
No 415
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=26.99 E-value=3.1e+02 Score=31.64 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhh-hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 012816 333 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFST-QHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV--- 408 (456)
Q Consensus 333 ~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~-~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev--- 408 (456)
+++|-++-++|.-+++ =|-.|.+|+.-...++. .-..++++|. .|++..+|+|++|+.++++..+.
T Consensus 310 NsqLLetKNALNiVKN------DLIakVDeL~~E~~vLrgElea~kqak~----Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 310 NSQLLETKNALNIVKN------DLIAKVDELTCEKDVLRGELEAVKQAKL----KLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred hHHHHhhhhHHHHHHH------HHHHHHHhhccHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666665552 24455555543332221 1111112221 24555566666555544433222
Q ss_pred --hhhHHhH-HHHHHHHHHHHHhhhhH
Q 012816 409 --AGLKESV-AKTKARLSDLELESNRL 432 (456)
Q Consensus 409 --~d~~~rv-~e~k~RL~~LE~ess~L 432 (456)
++....| ++++.|..+.||-+-=+
T Consensus 380 ~~~~e~ddiPmAqRkRFTRvEMaRVLM 406 (832)
T KOG2077|consen 380 AKDDEDDDIPMAQRKRFTRVEMARVLM 406 (832)
T ss_pred hcccccccccHHHHhhhHHHHHHHHHH
Confidence 1112233 66777777777654433
No 416
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=26.98 E-value=7.6e+02 Score=26.28 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 012816 417 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 455 (456)
Q Consensus 417 e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~l 455 (456)
+....|.+++.+...+...+..++..+.+..-.+.+||.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~ 326 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGV 326 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeE
Confidence 455556666666666666666677777777777777775
No 417
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=26.28 E-value=2.4e+02 Score=32.76 Aligned_cols=39 Identities=5% Similarity=0.058 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHh
Q 012816 331 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF 369 (456)
Q Consensus 331 LS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~ 369 (456)
|+.++--+...++.-.++..+=+.+|+.-++-+...+++
T Consensus 175 l~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I 213 (784)
T PRK10787 175 LKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRI 213 (784)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444333444444445555555544444444
No 418
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=26.10 E-value=5e+02 Score=30.51 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 419 KARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 419 k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
..|+..+|.+...|...|..|...+++
T Consensus 665 e~~~~~~e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 665 ETRLKDLEAEAEELQSKISSLEEELEK 691 (769)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555554444
No 419
>PF13514 AAA_27: AAA domain
Probab=25.85 E-value=8.4e+02 Score=29.23 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 012816 399 NELALKEKEVAGLKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 399 ~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L 432 (456)
.++.....++.+++.|+..|...+..++.....|
T Consensus 736 ~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L 769 (1111)
T PF13514_consen 736 EELREALAEIRELRRRIEQMEADLAAFEEQVAAL 769 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555444443
No 420
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.70 E-value=5.4e+02 Score=25.47 Aligned_cols=21 Identities=10% Similarity=0.272 Sum_probs=18.5
Q ss_pred ccEEeeccchHHHHHHHhhcc
Q 012816 275 GKYHVRASISSILQSIISRYG 295 (456)
Q Consensus 275 nGFqVl~Sqv~iV~~IFeKHp 295 (456)
+||.|..+.=.+|+.+|+|.=
T Consensus 17 ~G~rIPr~vPasLrasf~k~~ 37 (195)
T PF12761_consen 17 DGYRIPREVPASLRASFEKEQ 37 (195)
T ss_pred cCCcCCccCCHHHHHHHhcCC
Confidence 599999999999999999864
No 421
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=25.69 E-value=7.5e+02 Score=25.46 Aligned_cols=23 Identities=4% Similarity=-0.071 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHH
Q 012816 395 ESQMNELALKEKEVAGLKESVAK 417 (456)
Q Consensus 395 Ee~l~eL~qKekev~d~~~rv~e 417 (456)
+.+..++.++..-.++++.|+.-
T Consensus 176 ~lE~~yre~~~~v~~E~K~~lDy 198 (247)
T KOG3976|consen 176 QLEATYREQLVRVAKEVKRRLDY 198 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555543
No 422
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=25.54 E-value=1.8e+02 Score=24.55 Aligned_cols=59 Identities=10% Similarity=0.251 Sum_probs=32.0
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 012816 296 DIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 358 (456)
Q Consensus 296 DIAsnf~lKs~~lRs~ymn~Ll~LIetL--~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLek 358 (456)
++|.-|.+....+| +|-. .+++.-. ..+.-+..|.+|+..+.... .|...||-++=++.
T Consensus 5 eva~~~gvs~~tlR-~ye~--~Gll~~~~~~~~g~R~y~~~di~~l~~i~-~lr~~g~~l~~i~~ 65 (103)
T cd01106 5 EVAKLTGVSVRTLH-YYDE--IGLLKPSRRTENGYRLYTEEDLERLQQIL-FLKELGFSLKEIKE 65 (103)
T ss_pred HHHHHHCcCHHHHH-HHHH--CCCCCCCccCCCCceeeCHHHHHHHHHHH-HHHHcCCCHHHHHH
Confidence 44555566666666 3322 1222111 11223668888888776554 58888996654333
No 423
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=25.48 E-value=4.9e+02 Score=23.27 Aligned_cols=14 Identities=7% Similarity=0.387 Sum_probs=8.0
Q ss_pred hhccHHHHHHHHHH
Q 012816 329 MQMTKAKVKEMMAV 342 (456)
Q Consensus 329 ~eLS~~dL~ea~~~ 342 (456)
+.||.++|.+....
T Consensus 2 ~~lS~~eL~~Ll~d 15 (150)
T PF07200_consen 2 QDLSTEELQELLSD 15 (150)
T ss_dssp GS-TTHHHHHHHHH
T ss_pred CcCCHHHHHHHHcC
Confidence 56667777666554
No 424
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.45 E-value=4e+02 Score=22.29 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=28.5
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 012816 353 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESV 415 (456)
Q Consensus 353 VDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv 415 (456)
++-|+.||.......+-+ .-.++-+++..++|+..-+.+..+..-+.++++++
T Consensus 30 ~~~lk~Klq~ar~~i~~l----------pgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 30 TGSLKHKLQKARAAIREL----------PGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHhC----------CCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355677887776666321 11344555555555555455555555555554443
No 425
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=25.28 E-value=8.7e+02 Score=26.05 Aligned_cols=94 Identities=16% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHH-------------HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 012816 333 KAKVKEMMAVLKDVESAQIDVDWLRNILNEIS-------------EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMN 399 (456)
Q Consensus 333 ~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~-------------Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~ 399 (456)
..+|.++...|..|. .-++|+=++.+++++. .++++++.+..+...-+..+ .++...+++++..+
T Consensus 6 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~-~~~~~~~d~~~l~e 83 (364)
T TIGR00020 6 NNRIEDLTSRLDTVR-GSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLE-ELKNSLEDLSELLE 83 (364)
T ss_pred HHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_pred HH-HHHHHHHhh-hHHhHHHHHHHHHHHHHh
Q 012816 400 EL-ALKEKEVAG-LKESVAKTKARLSDLELE 428 (456)
Q Consensus 400 eL-~qKekev~d-~~~rv~e~k~RL~~LE~e 428 (456)
-+ .....++.+ +...+..+...|.+||++
T Consensus 84 l~~~e~D~e~~~~a~~e~~~l~~~l~~le~~ 114 (364)
T TIGR00020 84 LAVEEDDEETFNELDAELKALEKKLAELELR 114 (364)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
No 426
>PRK14149 heat shock protein GrpE; Provisional
Probab=25.17 E-value=1.1e+02 Score=29.90 Aligned_cols=36 Identities=8% Similarity=0.107 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARL 422 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL 422 (456)
++.+++++++....+.+...+....|.|...=++++
T Consensus 45 ~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~ 80 (191)
T PRK14149 45 KEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMA 80 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544555555555555555554433333
No 427
>COG4420 Predicted membrane protein [Function unknown]
Probab=25.10 E-value=6.9e+02 Score=24.82 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 012816 389 STKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 434 (456)
Q Consensus 389 ~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~ 434 (456)
..+++.....++|..+.......+.++.++++.|.+++.+......
T Consensus 131 kaE~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~~~~~ 176 (191)
T COG4420 131 KAEQEVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPELADEEA 176 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcccccHHH
Confidence 3455666556666666666666677888899999988887777655
No 428
>CHL00094 dnaK heat shock protein 70
Probab=25.03 E-value=4e+02 Score=29.63 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=19.7
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhh
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDW 355 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDW 355 (456)
..||.+++.++...+..+...--....
T Consensus 500 ~~ls~~~i~~~~~~~~~~~~~d~~~~~ 526 (621)
T CHL00094 500 STLPKDEVERMVKEAEKNAAEDKEKRE 526 (621)
T ss_pred hhccHHHHHHHHHHHHHhhhcchhHHH
Confidence 469999999999888887655444333
No 429
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.91 E-value=7.9e+02 Score=26.13 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=5.9
Q ss_pred cCcccchhHHHH
Q 012816 300 NCNLESNSMRAY 311 (456)
Q Consensus 300 nf~lKs~~lRs~ 311 (456)
-.+..+...|+-
T Consensus 210 ~~~~d~kDWR~h 221 (359)
T PF10498_consen 210 TIRADAKDWRSH 221 (359)
T ss_pred eccCCcchHHHH
Confidence 334445555553
No 430
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=24.89 E-value=7.2e+02 Score=24.97 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=16.4
Q ss_pred chHHHHHHHhhcccccccCccc
Q 012816 283 ISSILQSIISRYGDIAANCNLE 304 (456)
Q Consensus 283 qv~iV~~IFeKHpDIAsnf~lK 304 (456)
.+-.-+++|.+||.. ++..+.
T Consensus 58 t~ky~Rk~fGRYG~a-SgV~P~ 78 (217)
T PF10147_consen 58 TVKYKRKLFGRYGLA-SGVDPG 78 (217)
T ss_pred hHHHHHHHHHhhhhh-cCCChh
Confidence 456778999999987 777664
No 431
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.88 E-value=6.1e+02 Score=24.14 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhh
Q 012816 397 QMNELALKEKEVAGLKESVAKTKARLSDLELESN 430 (456)
Q Consensus 397 ~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess 430 (456)
....|..++.+-+.++.|-.++.-||.+|+....
T Consensus 89 lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tie 122 (159)
T PF05384_consen 89 LQVRLAMLREREKQLRERRDELERRLRNLEETIE 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444454555555554444333
No 432
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=24.87 E-value=6.5e+02 Score=25.48 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHH
Q 012816 414 SVAKTKARLSDLELESNRLEQII 436 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v 436 (456)
...++++++.+||.+.+.|.-+.
T Consensus 89 ~f~a~~edi~rlE~~i~~lgaRw 111 (231)
T COG5493 89 EFRATKEDIKRLETIITGLGARW 111 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888886666654443
No 433
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.87 E-value=5.3e+02 Score=28.29 Aligned_cols=31 Identities=35% Similarity=0.368 Sum_probs=17.7
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 012816 402 ALKEKEVAGLKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 402 ~qKekev~d~~~rv~e~k~RL~~LE~ess~L 432 (456)
.....++++++.++.+....|.+++++...+
T Consensus 71 ~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 71 EELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344455555556666666666666665554
No 434
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=24.76 E-value=1.1e+03 Score=31.76 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 012816 382 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 443 (456)
Q Consensus 382 ~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV 443 (456)
+|++...+...+|++.-++..+++.++.|+=.+..++-+.-.-++..-..|.+.|.++--|.
T Consensus 555 ~W~~~k~e~~~~L~~~ne~~i~Le~~I~~Lfk~y~~~~~e~~yi~~lK~~lk~kiK~is~k~ 616 (2757)
T TIGR01612 555 NWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKN 616 (2757)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777777777777777777555555544444444444444555555444443
No 435
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=24.74 E-value=7.2e+02 Score=24.92 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=16.8
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHH
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL 360 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLekKL 360 (456)
+.+=+.||.++..+.+-|+..-+.+|--++|+
T Consensus 125 ~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~ 156 (220)
T cd07617 125 RNFLEGDWKTISKERRLLQNRRLDLDACKARL 156 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555
No 436
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=24.65 E-value=1.6e+02 Score=25.97 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 414 SVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
++..+.+++.+|+.+...|...+..+..++.+
T Consensus 81 ~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 81 MLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 437
>PF14772 NYD-SP28: Sperm tail
Probab=24.51 E-value=4.5e+02 Score=22.45 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHh-HHHHHHHHHHHHHhhhh
Q 012816 392 KELESQMNELALKEKEVAGLKES-VAKTKARLSDLELESNR 431 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d~~~r-v~e~k~RL~~LE~ess~ 431 (456)
++|-.+++.+.+.+.++-+-+.. |.++..-|...+..+..
T Consensus 54 ~eL~~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~~deqy~~ 94 (104)
T PF14772_consen 54 QELRKEIEEQKQACERIIDRKDALIKELQQELKEADEQYVK 94 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777775443 36777777777655544
No 438
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.50 E-value=4.4e+02 Score=29.37 Aligned_cols=6 Identities=0% Similarity=0.373 Sum_probs=3.2
Q ss_pred ccHHHH
Q 012816 331 MTKAKV 336 (456)
Q Consensus 331 LS~~dL 336 (456)
||-+++
T Consensus 42 ltpee~ 47 (472)
T TIGR03752 42 LSPEEL 47 (472)
T ss_pred CCcchh
Confidence 555554
No 439
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=24.46 E-value=76 Score=32.47 Aligned_cols=81 Identities=14% Similarity=0.285 Sum_probs=56.1
Q ss_pred cccccccceEEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHH
Q 012816 263 EAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAV 342 (456)
Q Consensus 263 E~~Svvsetv~VnGFqVl~Sqv~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~ 342 (456)
|++..+..-|.=+-|+=--.....++++..+||++..--.+ ...+...-..+|-+||..|..+- .|..++.+
T Consensus 108 ElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i-~~ev~~~~~~ml~~Li~~L~~~l-------~l~~~ik~ 179 (338)
T PF04124_consen 108 ELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI-AQEVEAALQQMLSQLINQLRTPL-------KLPACIKT 179 (338)
T ss_pred hhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH-HHHHHHHHHHHHHHHHHHHcCcc-------cHHHHHHH
Confidence 55555554477778888888889999999999994432222 23344455667778888886553 57788888
Q ss_pred HhHHHhcCc
Q 012816 343 LKDVESAQI 351 (456)
Q Consensus 343 L~dL~~agf 351 (456)
+.+|+.++.
T Consensus 180 v~~Lrrl~~ 188 (338)
T PF04124_consen 180 VGYLRRLPV 188 (338)
T ss_pred HHHHHHhcc
Confidence 888887764
No 440
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=24.36 E-value=2.1e+02 Score=33.30 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-------HHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 012816 391 KKELESQMNELALKEKEVAGL-------KESVAKTKARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 391 kkELEe~l~eL~qKekev~d~-------~~rv~e~k~RL~~LE~ess~L~~~v~~~k 440 (456)
.++|++..++|...++.+..- .+.++.-+++|.+++.+...|.+.+..++
T Consensus 817 ~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 817 EKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444455555544431 24567778889999998888888776654
No 441
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=24.30 E-value=8.8e+02 Score=26.74 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=44.9
Q ss_pred HHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh-hhhHHHHH
Q 012816 285 SILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW-LRNILNEI 363 (456)
Q Consensus 285 ~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDW-LekKLeEV 363 (456)
+.|-..-.-.=|-|.++++.|..+|.+.=.+|-..-..|.. +....++. .-+-+.++++|.=+|.| |.+.|+||
T Consensus 227 e~W~~fs~~nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~----Q~~~ve~a-f~~ri~etqdar~kL~~ql~k~leEi 301 (421)
T KOG2685|consen 227 ESWAKFSGDNLDRAERERAASAALREALDQTLRETANDLRT----QADAVELA-FKKRIRETQDARNKLEWQLAKTLEEI 301 (421)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444334444567888888888887654443333333321 11111111 12457788888888888 77888888
Q ss_pred HHHH
Q 012816 364 SEAI 367 (456)
Q Consensus 364 ~Ear 367 (456)
..+-
T Consensus 302 ~~~e 305 (421)
T KOG2685|consen 302 ADAE 305 (421)
T ss_pred HHHH
Confidence 7654
No 442
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=24.21 E-value=7.5e+02 Score=24.98 Aligned_cols=101 Identities=22% Similarity=0.279 Sum_probs=53.3
Q ss_pred cccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHH
Q 012816 298 AANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTID 377 (456)
Q Consensus 298 Asnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e 377 (456)
.++++|.-...+. ||.|-..+...- .+-++.-+.++...+.+++...-.|+==..+|.++ +.-++ .+
T Consensus 29 ~~~~kL~~egA~a-----LC~l~~L~~~v~-~~~ad~l~~~~~~~~~~i~~~~~~v~~~~~~l~~~-~~~~l------~~ 95 (286)
T PF11727_consen 29 NADCKLNGEGAAA-----LCTLKDLVEKVR-NETADYLVKETEDFLGDIKLHKEQVDHRVERLRSL-EKGKL------TD 95 (286)
T ss_pred CccCccCHHHHHH-----HHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcCC------CH
Confidence 5667777666554 444444443331 34445556666666777665554443222355555 32222 11
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012816 378 AAKANCVNLLESTKKELESQMNELALKEKEVAGL 411 (456)
Q Consensus 378 ~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~ 411 (456)
...+......+.+++++.+++.........+.+.
T Consensus 96 ~~~~kl~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 129 (286)
T PF11727_consen 96 SDVKKLKEICEEAKKKNTEQLEEAKKAMEEAEET 129 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334456666777777776666666555553
No 443
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.16 E-value=6.9e+02 Score=24.51 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=17.2
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHH
Q 012816 413 ESVAKTKARLSDLELESNRLEQII 436 (456)
Q Consensus 413 ~rv~e~k~RL~~LE~ess~L~~~v 436 (456)
..|.++..+|.++..+..++.+.|
T Consensus 135 ~~i~eaE~~l~~a~~d~~r~s~~l 158 (211)
T cd07598 135 QIISQAESELQKASVDANRSTKEL 158 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888887765544
No 444
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=24.01 E-value=6.1e+02 Score=23.81 Aligned_cols=23 Identities=9% Similarity=0.224 Sum_probs=10.1
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHH
Q 012816 411 LKESVAKTKARLSDLELESNRLE 433 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~ess~L~ 433 (456)
+...+.++..|+..++.+...+.
T Consensus 168 ~~~ei~~~~~~~~~~~~~~~~is 190 (236)
T PF09325_consen 168 AENEIEEAERRVEQAKDEFEEIS 190 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 445
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.90 E-value=6.3e+02 Score=23.97 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=15.5
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 012816 405 EKEVAGLKESVAKTKARLSDLELESNRLEQI 435 (456)
Q Consensus 405 ekev~d~~~rv~e~k~RL~~LE~ess~L~~~ 435 (456)
+..+......+..++..|.+|+.+..++...
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555554433
No 446
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=23.85 E-value=2.7e+02 Score=30.26 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=10.0
Q ss_pred hhhhhHHHHHHHHHH
Q 012816 354 DWLRNILNEISEAIE 368 (456)
Q Consensus 354 DWLekKLeEV~Eare 368 (456)
.=|+.||+++.+.++
T Consensus 166 ~L~~~Rl~~L~~qi~ 180 (475)
T PF10359_consen 166 ELIQERLDELEEQIE 180 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 557777777766663
No 447
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=23.83 E-value=6.4e+02 Score=26.52 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHH-------------HHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 399 NELALKEKEVAGLKESVAKTKARLS-------------DLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 399 ~eL~qKekev~d~~~rv~e~k~RL~-------------~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
--|+.+|+||.|+..+|.+.+..+. ...+..++|..-|..-+-|++...
T Consensus 136 ~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~Q 197 (330)
T KOG2991|consen 136 MRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQ 197 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666655442 123455666666666666666543
No 448
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=23.79 E-value=6.9e+02 Score=27.73 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHH
Q 012816 361 NEISEAIEFSTQHQTIDAAKANCVNL--LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQA 438 (456)
Q Consensus 361 eEV~Eare~~~~~~~~e~eKe~~dr~--~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~ 438 (456)
.|+..+.+..+.+++..+.-+..+.. .+.+..|+++.-.|=.+..++.++...+..++..-|.+++.+..++.+--..
T Consensus 150 ~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~ 229 (447)
T KOG2751|consen 150 KEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQ 229 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhcc
Q 012816 439 TQSKVTKFS 447 (456)
Q Consensus 439 ~kSKV~kf~ 447 (456)
++.+-..|+
T Consensus 230 ~~~ey~~~~ 238 (447)
T KOG2751|consen 230 YWREYNNFQ 238 (447)
T ss_pred HHHHHHHHH
No 449
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.57 E-value=4.5e+02 Score=27.50 Aligned_cols=72 Identities=13% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 369 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 369 ~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
+|-.+|.++.+++.- ...-....++.+.++++...+..... .+..+-|.++.....++.+.|.+++..+.+|
T Consensus 36 ~Y~~yQ~~EQAr~~A-~~fA~~ld~~~~kl~~Ms~~ql~~~~-----~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 36 WYYFYQNAEQARQEA-IEFADSLDELKEKLKEMSSTQLRANI-----AKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHhcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>PHA02675 ORF104 fusion protein; Provisional
Probab=23.52 E-value=4.2e+02 Score=23.32 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 394 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 394 LEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
||+-|..|.+.-+.+.+ .-....++|.+||.-...|-+++..|--|++
T Consensus 35 le~RL~~L~k~~~~i~~---cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKID 82 (90)
T PHA02675 35 VEERLVSLLDSYKTITD---CCRETGARLDRLERHLETLREALLKLNTKID 82 (90)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444444444444 3344566888888887888888888877776
No 451
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=23.52 E-value=4.6e+02 Score=22.28 Aligned_cols=70 Identities=17% Similarity=0.310 Sum_probs=28.0
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHhH-HHHHHHHHHHHHhhh-hHHHHHHHhhhhh
Q 012816 374 QTIDAAKANCVNLLESTKKELESQMNELALKEK-EVAGLKESV-AKTKARLSDLELESN-RLEQIIQATQSKV 443 (456)
Q Consensus 374 ~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKek-ev~d~~~rv-~e~k~RL~~LE~ess-~L~~~v~~~kSKV 443 (456)
..+..+++.-+..++..+.+.++.+..+..... +.......+ .++.+++..|..... +.++.+..|=+.|
T Consensus 29 ~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~~vv~~ll~~V 101 (105)
T PF03179_consen 29 QRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEIKKSASKNKDKVVDMLLSRV 101 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444444555555555544433222221 222222233 445556666654433 3444444444433
No 452
>PRK07090 class II aldolase/adducin domain protein; Provisional
Probab=23.30 E-value=92 Score=31.07 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=50.2
Q ss_pred HHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcc-hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 012816 290 IISRYGDIAANCNLESNSMRAYYLECLCSVVQELQST-SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 361 (456)
Q Consensus 290 IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~ks-pl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLe 361 (456)
|+..||=|+..-.+..-..+..|||-.|.+.-..... .+..|+.+++.++...+..-..+-+-.+|+..++.
T Consensus 180 LL~nHGvi~~G~~l~eA~~~~~~LE~~A~i~l~a~~~G~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (260)
T PRK07090 180 LLSHHGQLVAGKSIEEACVLALLIERAARLQLLAMAAGPIKPIPPELAREAHDWISTPKRSAATFAYYARRAL 252 (260)
T ss_pred EECCCCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCHHHHHHHHHhhcCcchhHhhHHHHHHHHH
Confidence 4678999999999999999999999999986554432 34789999998886654222222223444544443
No 453
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=23.28 E-value=4.3e+02 Score=28.53 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012816 334 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELAL 403 (456)
Q Consensus 334 ~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ear-e~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~q 403 (456)
.-+.++.+.+.++.+. ++-||.++. +-+--+++|+.+|.+..-.+..+|.+|+++-+.|+.
T Consensus 104 s~~iD~EAs~~e~~Ds---------kv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLae 165 (405)
T KOG2010|consen 104 SSLIDPEASLSELRDS---------KVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAE 165 (405)
T ss_pred ccccChHHHHHHHhhh---------hhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHH
Confidence 3344555556666532 334444443 333456777778777655566666666655444443
No 454
>PRK11820 hypothetical protein; Provisional
Probab=23.18 E-value=8.4e+02 Score=25.14 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHH
Q 012816 305 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKE 338 (456)
Q Consensus 305 s~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~e 338 (456)
|..+-..|++.|-.|-+.|.. ...++-++|..
T Consensus 81 d~~l~~~y~~~l~~l~~~~~~--~~~~~l~~ll~ 112 (288)
T PRK11820 81 NEDLAKQYLEALEELKAELPE--AGEISLDDLLR 112 (288)
T ss_pred CHHHHHHHHHHHHHHHHhcCC--CCCCCHHHHhC
Confidence 666667788888777776611 01556555554
No 455
>PRK13411 molecular chaperone DnaK; Provisional
Probab=23.12 E-value=6.9e+02 Score=28.16 Aligned_cols=21 Identities=5% Similarity=0.091 Sum_probs=15.9
Q ss_pred hhccHHHHHHHHHHHhHHHhc
Q 012816 329 MQMTKAKVKEMMAVLKDVESA 349 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~a 349 (456)
..||.+++..+...+..+...
T Consensus 500 ~~ls~~ei~~~~~~~~~~~~~ 520 (653)
T PRK13411 500 GGLSSNEIERMRQEAEKYAEE 520 (653)
T ss_pred ccchHHHHHHHHHHHHHHHHh
Confidence 458999998888887766533
No 456
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=23.06 E-value=6.1e+02 Score=24.68 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES 429 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~es 429 (456)
.|+.-.++|+.++.-|...+...+.+|.+...+..+|.+.+...
T Consensus 124 eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 124 ELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555555555566666666665555443
No 457
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=23.04 E-value=5.1e+02 Score=22.57 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=21.1
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 327 SLMQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 327 pl~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
.-+-.+..+|..+. .+..|+..||-|+
T Consensus 34 gyR~Y~~~~l~~l~-~I~~lr~~G~~L~ 60 (120)
T cd04781 34 LRRQYDPQVLDRLA-LIALGRAAGFSLD 60 (120)
T ss_pred CceecCHHHHHHHH-HHHHHHHcCCCHH
Confidence 34678888888886 7789999999654
No 458
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.90 E-value=7.7e+02 Score=24.63 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHh--------hhhHHHHHHHhhhhh
Q 012816 401 LALKEKEVAGLKESVAKTKARLSDLELE--------SNRLEQIIQATQSKV 443 (456)
Q Consensus 401 L~qKekev~d~~~rv~e~k~RL~~LE~e--------ss~L~~~v~~~kSKV 443 (456)
|.....++...++-=+...+.++.++.. --.+...+.++.+|.
T Consensus 132 ~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwtDnI~il~dy~~rkf 182 (203)
T KOG3433|consen 132 LESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWTDNIFILIDYLYRKF 182 (203)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhc
Confidence 3333333333333334445555555544 334566667776654
No 459
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=22.88 E-value=7.1e+02 Score=24.21 Aligned_cols=115 Identities=10% Similarity=0.173 Sum_probs=66.2
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHh--------hHHHHHHHHHHHHHHHHH
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKAN--------CVNLLESTKKELESQMNE 400 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~--------~dr~~e~~kkELEe~l~e 400 (456)
+..--++|..+.+.|.+.+...-+.+=|++.++..-...+-+. ..+...+.. ...-+.++.+.|......
T Consensus 16 ~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~--~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~ 93 (240)
T PF12795_consen 16 QKALIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQ--KELEALKSQDAPSKEILANLSLEELEQRLSQEQAQ 93 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHhhhccccccccCcccCCHHHHHHHHHHHHHH
Confidence 3344556667777777777777777777776664432221111 111111110 112345555666666667
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 401 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 401 L~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
|...+....++..++.....|..++....+...+.+..+...+..
T Consensus 94 L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 94 LQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777777777777777777776666666666666665554
No 460
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.83 E-value=2.8e+02 Score=24.05 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhHHHh
Q 012816 333 KAKVKEMMAVLKDVES 348 (456)
Q Consensus 333 ~~dL~ea~~~L~dL~~ 348 (456)
-.++..+..+|..|..
T Consensus 29 i~e~~~~~~~L~~l~~ 44 (126)
T TIGR00293 29 IAELETAIETLEDLKG 44 (126)
T ss_pred HHHHHHHHHHHHhccc
Confidence 3455566666666653
No 461
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=22.79 E-value=6.7e+02 Score=26.65 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhhhH
Q 012816 416 AKTKARLSDLELESNRL 432 (456)
Q Consensus 416 ~e~k~RL~~LE~ess~L 432 (456)
.+|.++|+.|+....+|
T Consensus 71 ~ema~~L~~LeavLqRi 87 (324)
T PF12126_consen 71 EEMAGQLGRLEAVLQRI 87 (324)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 66777777777666665
No 462
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.77 E-value=4.1e+02 Score=23.92 Aligned_cols=40 Identities=30% Similarity=0.386 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 012816 390 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 390 ~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L 432 (456)
+++||++...+|.+-+.+|.+ =+....+-|.+|-....+|
T Consensus 30 l~~eL~~~k~el~~yk~~V~~---HF~~ta~Ll~~l~~~Y~~l 69 (128)
T PF06295_consen 30 LEQELEQAKQELEQYKQEVND---HFAQTAELLDNLTQDYQKL 69 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555554 3334444444444444444
No 463
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.75 E-value=1.4e+02 Score=31.38 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 012816 390 TKKELESQMNELALKEKEVAG 410 (456)
Q Consensus 390 ~kkELEe~l~eL~qKekev~d 410 (456)
+.+||....+||.+|+.|++-
T Consensus 65 kq~eL~~rqeEL~Rke~ELdR 85 (313)
T KOG3088|consen 65 KQAELLKKQEELRRKEQELDR 85 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 345555555666666665554
No 464
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=22.73 E-value=6.2e+02 Score=28.62 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=3.5
Q ss_pred HHHHHHhhc
Q 012816 286 ILQSIISRY 294 (456)
Q Consensus 286 iV~~IFeKH 294 (456)
+++.+.+-|
T Consensus 172 iaN~la~~Y 180 (754)
T TIGR01005 172 IPDAIAAAY 180 (754)
T ss_pred HHHHHHHHH
Confidence 333333333
No 465
>CHL00094 dnaK heat shock protein 70
Probab=22.58 E-value=6.8e+02 Score=27.90 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=6.3
Q ss_pred cCCCccCCCCCc
Q 012816 178 RSTQSVPPSENI 189 (456)
Q Consensus 178 ~~~~~~p~s~~~ 189 (456)
....++|.+...
T Consensus 408 ~~~t~iP~~~~~ 419 (621)
T CHL00094 408 PRNTTIPTKKSE 419 (621)
T ss_pred eCCCccceeeeE
Confidence 444556655543
No 466
>PRK00736 hypothetical protein; Provisional
Probab=22.53 E-value=4.3e+02 Score=21.55 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=6.5
Q ss_pred hHHhHHHHHHHHHHH
Q 012816 411 LKESVAKTKARLSDL 425 (456)
Q Consensus 411 ~~~rv~e~k~RL~~L 425 (456)
+..++..+.+||..+
T Consensus 38 L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 38 MRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444444444443
No 467
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=22.53 E-value=7.7e+02 Score=24.48 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=13.2
Q ss_pred hHHHHHHHhhhhhhhccccchhhhc
Q 012816 431 RLEQIIQATQSKVTKFSQKSLADEI 455 (456)
Q Consensus 431 ~L~~~v~~~kSKV~kf~~kSl~D~l 455 (456)
.+...+..++..+.+-.-.+.+||.
T Consensus 190 ~~~~~l~~a~~~l~~~~i~AP~dG~ 214 (327)
T TIGR02971 190 SALEAVQQAEALLELTYVKAPIDGR 214 (327)
T ss_pred HHHHHHHHHHHHHhcCEEECCCCeE
Confidence 3333444455555555556666664
No 468
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=22.52 E-value=4.3e+02 Score=26.91 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh-cchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHH
Q 012816 313 LECLCSVVQELQ-STSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI-EFSTQHQTIDAAKANCVNLLEST 390 (456)
Q Consensus 313 mn~Ll~LIetL~-kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ear-e~~~~~~~~e~eKe~~dr~~e~~ 390 (456)
.++||..++.|| ..| +-++.++. .+..+|+++...-+..+..+.+.
T Consensus 159 vevLL~~ae~L~~vYP--------------------------------~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ 206 (259)
T PF08657_consen 159 VEVLLRGAEKLCNVYP--------------------------------LPGAREKIAALRQRYNQLSNSIAYLEAEVAEQ 206 (259)
T ss_pred HHHHHHHHHHHHHhCC--------------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-----------------HHHHhhhHHhHHHHHHHHHHHH
Q 012816 391 KKELESQMNELALK-----------------EKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 391 kkELEe~l~eL~qK-----------------ekev~d~~~rv~e~k~RL~~LE 426 (456)
+++|+.+-...... ++.+..-.+.|.++..++.+||
T Consensus 207 ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 207 EAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred HHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
No 469
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=22.51 E-value=6.4e+02 Score=23.54 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhh--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012816 331 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQT--IDAAKANCVNLLESTKKELESQMNELALKEKEV 408 (456)
Q Consensus 331 LS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~--~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev 408 (456)
.+.++|..+ ..+..|+++|| -|+||.+.....+.... .+... ..++...++|++++++|......+
T Consensus 49 Y~~~~i~~L-~~I~~lr~lG~-------sL~eIk~ll~~~~~~~~~~~~~~~----~ll~~k~~~l~~~I~~L~~~~~~L 116 (154)
T PRK15002 49 YKRDVLRYV-AIIKIAQRIGI-------PLATIGEAFGVLPEGHTLSAKEWK----QLSSQWREELDRRIHTLVALRDEL 116 (154)
T ss_pred ECHHHHHHH-HHHHHHHHcCC-------CHHHHHHHHHHhhcCCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhH
Q 012816 409 AGLK 412 (456)
Q Consensus 409 ~d~~ 412 (456)
....
T Consensus 117 ~~~i 120 (154)
T PRK15002 117 DGCI 120 (154)
T ss_pred HHHH
No 470
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.49 E-value=8e+02 Score=26.64 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 012816 356 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 435 (456)
Q Consensus 356 LekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~ 435 (456)
|..|+-.|.|+-+=+.+-+...++.......+..-.++|..+|.-....--.++. +..-+.+=+.+++.+..++...
T Consensus 73 lq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~---~~q~LE~li~~~~EEn~~lqlq 149 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKG---DIQHLEGLIRHLREENQCLQLQ 149 (401)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHhh
Q 012816 436 IQATQ 440 (456)
Q Consensus 436 v~~~k 440 (456)
+.+++
T Consensus 150 L~~l~ 154 (401)
T PF06785_consen 150 LDALQ 154 (401)
T ss_pred HHHHH
No 471
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=22.44 E-value=5e+02 Score=29.82 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 012816 356 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 435 (456)
Q Consensus 356 LekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~ 435 (456)
|-.+|.++... |.+..-.+....+..+..+....++++..-..|.++|+.... +...|...|.+|..-++-|.+.
T Consensus 580 la~~l~~~l~~--~t~~~G~i~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~---QFtaME~~msqmnsqss~L~~~ 654 (661)
T PRK06664 580 VAKMLLEYLSP--YTQAGGIIYNKVKGLDERIADNNKKIEEYEKKLESKERKLKG---KYLTMDQTVKKMKEQSNYLKNF 654 (661)
T ss_pred HHHHHHHHHHH--HHcCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhh
Q 012816 436 IQATQ 440 (456)
Q Consensus 436 v~~~k 440 (456)
+...+
T Consensus 655 ~~~~~ 659 (661)
T PRK06664 655 NKSGR 659 (661)
T ss_pred Hhhcc
No 472
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=22.43 E-value=7.3e+02 Score=24.17 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816 353 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 353 VDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE 426 (456)
+..|++.|.++...++-+.............. +..+.++-.+.+..-.+.+.+...++..|.+.+.+..+++
T Consensus 145 ~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~--L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 145 LKRLEKELAKLKKEIEEVNRERKRRQEEAGEE--LRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 473
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.41 E-value=3.5e+02 Score=26.07 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh---------hhhHHHHHHHhh
Q 012816 391 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE---------SNRLEQIIQATQ 440 (456)
Q Consensus 391 kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~e---------ss~L~~~v~~~k 440 (456)
..|-|+...||.+.|.||.-+++-+.+-..|+++|.-+ ..+|.+.+.+++
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq 86 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQ 86 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhh
No 474
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=22.32 E-value=1e+03 Score=25.81 Aligned_cols=117 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 012816 316 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE 395 (456)
Q Consensus 316 Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELE 395 (456)
++.+|..+ +.-...+|..+...+..+. .|++.... .+++-.+.+-..++..+..+.....+++
T Consensus 310 ~~plv~~~-----q~~~e~~le~l~~~~E~~a------~~~~~~~~------~L~~f~~~~~~lwd~h~~~l~~~e~~l~ 372 (473)
T PF14643_consen 310 FLPLVGEL-----QSEFEEELEKLDKSFEELA------KQTEAQSE------DLFKFFQEAAQLWDEHRKKLSKQEEELE 372 (473)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHH------HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhh-hHHhHHHHHHHHHH------HHHhhhhHHHHHHHhhhhhhhcccc
Q 012816 396 SQMNELALKEKEVAG-LKESVAKTKARLSD------LELESNRLEQIIQATQSKVTKFSQK 449 (456)
Q Consensus 396 e~l~eL~qKekev~d-~~~rv~e~k~RL~~------LE~ess~L~~~v~~~kSKV~kf~~k 449 (456)
..++..+++-.+... ....+....+||.+ |+....+..+.|..++..-+.|++.
T Consensus 373 ~~l~~~r~~~~~~~q~~E~~Ld~~~d~lRq~s~ee~L~~~l~~~~~~Ld~Ie~~Y~~fh~~ 433 (473)
T PF14643_consen 373 KRLEQCREKHDQENQEKEAKLDIALDRLRQASSEEKLKEHLEKALDLLDQIEEEYEDFHKK 433 (473)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=22.32 E-value=5.3e+02 Score=25.97 Aligned_cols=125 Identities=19% Similarity=0.359 Sum_probs=0.0
Q ss_pred EEeeccchHHHHHHHhhcccccccCcccchhHHHHHHHHHHH-HHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh
Q 012816 277 YHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCS-VVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW 355 (456)
Q Consensus 277 FqVl~Sqv~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~-LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDW 355 (456)
|+|+.-.+.++.+|+.+| --+....-...++-||..-|. ++-.|.-..++=|+++--.+-..+|.-+. +-
T Consensus 112 ~~vL~~cl~~L~~li~~~---rl~~q~~~d~~~~~~L~~kceam~lKLr~~~~~iL~~TYTpe~v~Al~~Ir------~~ 182 (238)
T PF14735_consen 112 YQVLLQCLQLLQKLIEKH---RLGTQAELDKIKAEYLEAKCEAMILKLRVLELEILSDTYTPETVPALRKIR------DH 182 (238)
T ss_pred HHHHHHHHHHHHHHHHHH---hhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhHHHHHHHH------HH
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 012816 356 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 427 (456)
Q Consensus 356 LekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ 427 (456)
|+..+.+..... ...+..+++-. -+-...++|++..-.+.+ +|...+|-|.++++
T Consensus 183 L~~~~~~~e~~~-------------~~a~~~L~~Ye-~lg~~F~~ivreY~~l~~---~ie~k~Wal~e~~~ 237 (238)
T PF14735_consen 183 LEEAIEELEQEL-------------QKARQRLESYE-GLGPEFEEIVREYTDLQQ---EIENKRWALEEFSK 237 (238)
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHh-cccHhHHHHHHHHHHHHH---HHHHHHHHHHHhcc
No 476
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=22.24 E-value=3.4e+02 Score=28.49 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 389 STKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 389 ~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
..+++|.+++++|.+..+.+.. .+..-+.+|..|......|.+....++..+.
T Consensus 101 ~~Rk~L~~~~~el~~~k~~l~~---~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~ 153 (355)
T PF09766_consen 101 EQRKRLEEQLKELEQRKKKLQQ---ENKKKKKFLDSLPPQLKSLKKAAKPLQEYLG 153 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
No 477
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.23 E-value=4.1e+02 Score=23.94 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 395 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 395 Ee~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.+...-|.+.++.+...-..+.+++..|.+|-.+...|..--.-|+..+.++
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 478
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=22.06 E-value=1.5e+03 Score=27.59 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHH
Q 012816 307 SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNL 386 (456)
Q Consensus 307 ~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~ 386 (456)
++|....++|=..=+.-.+....+.+.+|+.+-...|.| .|+++.-+. ..++-+.+...+.
T Consensus 435 ~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d-------------~le~~~~~~------~~~~~K~e~~~~~ 495 (980)
T KOG0980|consen 435 ELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLND-------------QLEELQRAA------GRAETKTESQAKA 495 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------------HHHHHHHHH------HHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 437 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~ 437 (456)
++.+++|+...+.++.+.+..+....++-..+.++|..++...-++.-.+.
T Consensus 496 le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~ 546 (980)
T KOG0980|consen 496 LESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELV 546 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
No 479
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.99 E-value=4.3e+02 Score=27.52 Aligned_cols=61 Identities=23% Similarity=0.323 Sum_probs=0.0
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 012816 351 IDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSD 424 (456)
Q Consensus 351 fKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~ 424 (456)
+.||-|+.+|+++-|.. .-..+..+++.+++|-+-..+.....++.++++.+.+-.+-|..
T Consensus 112 yqvd~Lkd~lee~eE~~-------------~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETL-------------AQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=21.97 E-value=3.8e+02 Score=20.71 Aligned_cols=103 Identities=12% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHH
Q 012816 335 KVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG-LKE 413 (456)
Q Consensus 335 dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d-~~~ 413 (456)
.+..-...+.+|. +||...=..+ ...........++........+..++.. .+..++.|...-..+.+ .-.
T Consensus 2 ~~~~f~~~~~~l~------~Wl~~~e~~l-~~~~~~~~~~~~~~~~~~~~~~~~ei~~-~~~~l~~l~~~~~~L~~~~~~ 73 (105)
T PF00435_consen 2 QLQQFQQEADELL------DWLQETEAKL-SSSEPGSDLEELEEQLKKHKELQEEIES-RQERLESLNEQAQQLIDSGPE 73 (105)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHH-CSCTHSSSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTHT
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHH-hCCCCCCCHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHcCCC
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 414 SVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
-...++.++.+|......|...+..-+.+++.
T Consensus 74 ~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 74 DSDEIQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
No 481
>smart00721 BAR BAR domain.
Probab=21.89 E-value=6.5e+02 Score=23.39 Aligned_cols=157 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred cchHHHHHHHhhcccccccCcccchhHHHH--HHHHHHHHHH----------HHhcchhhhccHHHHHHHHHHHhHHHhc
Q 012816 282 SISSILQSIISRYGDIAANCNLESNSMRAY--YLECLCSVVQ----------ELQSTSLMQMTKAKVKEMMAVLKDVESA 349 (456)
Q Consensus 282 Sqv~iV~~IFeKHpDIAsnf~lKs~~lRs~--ymn~Ll~LIe----------tL~kspl~eLS~~dL~ea~~~L~dL~~a 349 (456)
....++..++.-+ +...+|-..+...... |-+.+..+++ ..-.++ ..+-..++.++...+.-+..+
T Consensus 69 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~kk~~~~ 146 (239)
T smart00721 69 KLSKSLGEVYEGG-DDGEGLGADSSYGKALDKLGEALKKLLQVEESLSQVKRTFILPL-LNFLLGEFKEIKKARKKLERK 146 (239)
T ss_pred HHHHHHHHHhcCC-CCccccCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhH-HHHHHHHhHHHHHHHHHHHhH
Q ss_pred CcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh-HHHHHHHHHHHH-H
Q 012816 350 QIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKES-VAKTKARLSDLE-L 427 (456)
Q Consensus 350 gfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~r-v~e~k~RL~~LE-~ 427 (456)
-++.|=.+.+|+.+....+... +.+-...+..++.++.+.+..-.+|....-.+.+.+.. +..+-..|..++ .
T Consensus 147 ~lDyD~~~~kl~~~~~~~~~~~-----~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~ 221 (239)
T smart00721 147 LLDYDSARHKLKKAKKSKEKKK-----DEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLN 221 (239)
T ss_pred HHHHHHHHHHHHHHHHhccCCh-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHhhhhhhh
Q 012816 428 ESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 428 ess~L~~~v~~~kSKV~k 445 (456)
-.....+.+..+..-++.
T Consensus 222 y~~~~~~~l~~l~~~l~~ 239 (239)
T smart00721 222 FHRESYKLLQQLQQQLDK 239 (239)
T ss_pred HHHHHHHHHHHHHHHhcC
No 482
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=21.87 E-value=6e+02 Score=27.47 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 012816 356 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 435 (456)
Q Consensus 356 LekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~ 435 (456)
+-.+|.++.+. +++..-.+....+.....+..+.++++..-..|.++|+.... |..+|..-|.+|.-..+-|.+.
T Consensus 386 ~~~~l~~~l~~--~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~---qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 386 ITTQIATNLKS--WLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKA---QFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHH--HHcCCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 012816 436 I 436 (456)
Q Consensus 436 v 436 (456)
|
T Consensus 461 ~ 461 (462)
T PRK08032 461 F 461 (462)
T ss_pred h
No 483
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=21.84 E-value=6.6e+02 Score=24.63 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHH--HhhHHHHHHH
Q 012816 313 LECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAK--ANCVNLLEST 390 (456)
Q Consensus 313 mn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eK--e~~dr~~e~~ 390 (456)
+.-|=.++.+|....+.--.-+-|..+-.+|+.+- .++.+|=.+.-++++.|.+++.+...++-..- ...|
T Consensus 90 l~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~-k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~D------ 162 (191)
T PTZ00446 90 RLTLEDNMINLENMHLHKIAVNALSYAANTHKKLN-NEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVD------ 162 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC------
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 012816 391 KKELESQMNELALKEKEVAGLKESVAKT 418 (456)
Q Consensus 391 kkELEe~l~eL~qKekev~d~~~rv~e~ 418 (456)
..||+.+|++|.+.+.+-.-+.+-|.+|
T Consensus 163 EdELe~ELe~Le~e~l~~~ll~~~~~~~ 190 (191)
T PTZ00446 163 DDEIDKELDLLKEQTMEEKLLKELIGEM 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 484
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=21.83 E-value=4.8e+02 Score=21.80 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 384 VNLLESTKKELESQM-NELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 384 dr~~e~~kkELEe~l-~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
++.+..+...|+... .-+..-+....+++.....++.+.+.|.+....|.+.|..+-..|++.
T Consensus 5 E~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 5 EKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 485
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=21.74 E-value=6.6e+02 Score=23.40 Aligned_cols=102 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHH--HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhHHHHHHHHHHHHHhhh
Q 012816 355 WLRNILNEISEAI--EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG--LKESVAKTKARLSDLELESN 430 (456)
Q Consensus 355 WLekKLeEV~Ear--e~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d--~~~rv~e~k~RL~~LE~ess 430 (456)
||-+.+..+.+.| .+...-+.++..++.........++.|++--.+-.+...+... ...+...+..--.+++....
T Consensus 42 fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~ 121 (167)
T PRK08475 42 FAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIK 121 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHhhhhhhhccccchhhhcC
Q 012816 431 RLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 431 ~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
+....+..-+.+...-...-++|+++
T Consensus 122 ~a~~~ie~Ek~~a~~elk~eii~~~~ 147 (167)
T PRK08475 122 SFEELMEFEVRKMEREVVEEVLNELF 147 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=21.72 E-value=6.2e+02 Score=28.17 Aligned_cols=82 Identities=13% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhHHHHHHHHHHHHH-----hhhhHH
Q 012816 361 NEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG--LKESVAKTKARLSDLEL-----ESNRLE 433 (456)
Q Consensus 361 eEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d--~~~rv~e~k~RL~~LE~-----ess~L~ 433 (456)
++|.+.++.+.+....+.+. +...+++.++|..+-.+..+..+..+ ..+...++...|.+++. ....+.
T Consensus 503 e~i~~~~~~~~~~~~~d~~~----~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~~~~~~i~ 578 (627)
T PRK00290 503 EEIERMVKDAEANAEEDKKR----KELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGEDKEAIK 578 (627)
T ss_pred HHHHHHHHHHHHhhhcchhH----HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q ss_pred HHHHHhhhhhhhc
Q 012816 434 QIIQATQSKVTKF 446 (456)
Q Consensus 434 ~~v~~~kSKV~kf 446 (456)
+.+..++.++..+
T Consensus 579 ~k~~~L~~~~~~~ 591 (627)
T PRK00290 579 AKTEELTQASQKL 591 (627)
T ss_pred HHHHHHHHHHHHH
No 487
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.65 E-value=3.8e+02 Score=30.98 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 012816 382 NCVNLLESTKKELESQMNELALKEKE-------VAGLKESVAKTKARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 382 ~~dr~~e~~kkELEe~l~eL~qKeke-------v~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~k 440 (456)
...|.+++.++=++.--.||.+.|.. +.+++.+|+|++.-|-+.+.+.+.|+-.|..++
T Consensus 76 s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 76 SIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
No 488
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=21.57 E-value=7.8e+02 Score=24.16 Aligned_cols=83 Identities=12% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHhHHHHHHHHHH----------H
Q 012816 357 RNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG-LKESVAKTKARLSD----------L 425 (456)
Q Consensus 357 ekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d-~~~rv~e~k~RL~~----------L 425 (456)
..||.++.++. ..+.++..+...+.+++.++++-++.+++-...-+.+.+ ++.++..-+.|... |
T Consensus 7 ~~k~q~L~dki----~~eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l 82 (207)
T PRK01005 7 QDKLKQICDAL----REETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLE 82 (207)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHhhhhh
Q 012816 426 ELESNRLEQIIQATQSKV 443 (456)
Q Consensus 426 E~ess~L~~~v~~~kSKV 443 (456)
+++..=+.+.+..+..++
T Consensus 83 ~aKqevi~~vf~~a~~~l 100 (207)
T PRK01005 83 SLKQAVENKIFRESLGEW 100 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
No 489
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.42 E-value=1.1e+03 Score=27.40 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 012816 360 LNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 439 (456)
Q Consensus 360 LeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~ 439 (456)
++-|...+|-+=.+++ -.+...-|-+..++...+.++.+|+..++|...++++-.-..+|..++...-..|.+.+..+
T Consensus 565 ~~a~~vfrEqYi~~~d--lV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L 642 (741)
T KOG4460|consen 565 SRATQVFREQYILKQD--LVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL 642 (741)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred hh
Q 012816 440 QS 441 (456)
Q Consensus 440 kS 441 (456)
.+
T Consensus 643 ~~ 644 (741)
T KOG4460|consen 643 LH 644 (741)
T ss_pred Hh
No 490
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.41 E-value=2.1e+02 Score=24.86 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHH---HhhhhHHHHHHHhhhhhhhcc
Q 012816 398 MNELALKEKEVAGLKESVAKTKARLSDLE---LESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 398 l~eL~qKekev~d~~~rv~e~k~RL~~LE---~ess~L~~~v~~~kSKV~kf~ 447 (456)
..|+...|+.++.++.+++++.-||..-+ +.+..|++-+..++++++..+
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E 56 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNE 56 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccH
No 491
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=21.30 E-value=2.5e+02 Score=24.87 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhH--HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESV--AKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv--~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
+...+.+|+...+.|++.+..-.+ || -+++.=|++|+-....|...|..+....++
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaE---Rigr~AlKaGL~eieI~d~eL~~~FeeIa~RFrk 61 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAE---RIGRIALKAGLGEIEISDAELQAAFEEIAARFRK 61 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcccccccCCHHHHHHHHHHHHHHHhc
No 492
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=21.28 E-value=1.1e+03 Score=27.40 Aligned_cols=120 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH--hcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHH
Q 012816 313 LECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE--SAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLEST 390 (456)
Q Consensus 313 mn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~--~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~ 390 (456)
|+.+++.++ ..+++..+.+|+.+=.+|+ +-|++...-+--.+-|..-.+..+..+++-.+-..|+-+++.+
T Consensus 22 le~~~~~~~-------~~~~~e~v~~~lktg~~lr~y~~~ve~~l~k~e~~Siqdyi~es~~~~~lhNqi~~cd~Vl~rm 94 (683)
T KOG1961|consen 22 LEEVLSQLQ-------ECLDDELVKEALKTGDDLREYSKQVENELRKAERKSIQDYIKESENLASLHNQIRACDSVLERM 94 (683)
T ss_pred HHHHHHHHH-------HhcchHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhHhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 012816 391 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 439 (456)
Q Consensus 391 kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~ 439 (456)
..=|..=..+|.-.-.+++-++++-.+|--||.+...-.++|++-|.++
T Consensus 95 e~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~ 143 (683)
T KOG1961|consen 95 ETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDL 143 (683)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccc
No 493
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=21.25 E-value=1.2e+03 Score=26.06 Aligned_cols=214 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred cccccccccCCCCCCCCCCCCCcceeeccccccCCCCCcc-------cccccccceEEeccEEeeccchHHHHHHHhhcc
Q 012816 223 PIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDE-------EAQSVISDSVSVGKYHVRASISSILQSIISRYG 295 (456)
Q Consensus 223 ~~p~~~~~~~~g~~~~~~~~es~~Fs~~~i~~~~~~~d~e-------E~~Svvsetv~VnGFqVl~Sqv~iV~~IFeKHp 295 (456)
.+|+++-.+..|+++..++..+..-..-.++.....-... ..++..+ ++..+=+=..+-+..+..=+-.-.
T Consensus 43 ~~p~~~~~~~~~~~t~~~~a~~~~~~~~~~~~~~~~~~~~~~p~r~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~ 120 (447)
T KOG2751|consen 43 VLPLHKPPQSQGGPTRPRGASSGDATSGKTPQESSVVVYFSPPVRDSDTEHNLS--FELGENGSDGSNTKTLSATINVLT 120 (447)
T ss_pred cCCCCCCccccCCCccCccccCccccCCcchhhccceecccCcccccccccccc--cccccccchhhhhHHHHHHHHHHH
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcc--hhhhhhHHHHHH-HHHHhhhh
Q 012816 296 DIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQID--VDWLRNILNEIS-EAIEFSTQ 372 (456)
Q Consensus 296 DIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfK--VDWLekKLeEV~-Eare~~~~ 372 (456)
+.-.-.....+..-..|.+|-=.|+..|..-- ++-+++...=...|..|+...-. ..=|...|+++. |..+++++
T Consensus 121 ~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~--~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~ 198 (447)
T KOG2751|consen 121 RLFDILSSQTQVDHPLCEECMDVLLNKLDKEV--EDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQ 198 (447)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 012816 373 HQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 373 ~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~k 440 (456)
-..++++.+.++..+.+...+-++..++-.+.-.+--+...++.+..+.|.-|+..+.--..-+.-++
T Consensus 199 lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ 266 (447)
T KOG2751|consen 199 LEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLR 266 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHH
No 494
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=21.22 E-value=3.6e+02 Score=20.65 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSD 424 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~ 424 (456)
.++.+++|| |+|+......|++ +-|.+++..|.+
T Consensus 4 dle~~KqEI---L~EvrkEl~K~K~--EIIeA~~~eL~r 37 (40)
T PF08776_consen 4 DLERLKQEI---LEEVRKELQKVKE--EIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHhc
No 495
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=21.22 E-value=6.5e+02 Score=23.14 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH----------HHHHHHHHHhhhhH
Q 012816 363 ISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT----------KARLSDLELESNRL 432 (456)
Q Consensus 363 V~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~----------k~RL~~LE~ess~L 432 (456)
..+...+=.++++|..+-+-.-..-+...+.++..|.++.....++.+.-++++++ ++=|.++..-..+|
T Consensus 26 ~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L 105 (126)
T PF09403_consen 26 ESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKL 105 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhc
Q 012816 433 EQIIQATQSKVTKF 446 (456)
Q Consensus 433 ~~~v~~~kSKV~kf 446 (456)
++-|..-...|..|
T Consensus 106 ~k~I~~~e~iI~~f 119 (126)
T PF09403_consen 106 DKEIAEQEQIIDNF 119 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 496
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=21.13 E-value=3.5e+02 Score=24.03 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhh-hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccch
Q 012816 396 SQMNELALKEKEVAG-LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 451 (456)
Q Consensus 396 e~l~eL~qKekev~d-~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl 451 (456)
..|+.|-..|+++.+ ++.=+.+...||..|+.....+......+.+..+.|.+.++
T Consensus 4 ~~m~~Ll~~E~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~d~e~yl~nPl 60 (134)
T PF08336_consen 4 ADMEKLLELEEELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKSDPEEYLSNPL 60 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcHH
No 497
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=21.06 E-value=1e+03 Score=27.27 Aligned_cols=87 Identities=14% Similarity=0.284 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH----------------HHHHHHhhhHHhHHHH
Q 012816 355 WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELA----------------LKEKEVAGLKESVAKT 418 (456)
Q Consensus 355 WLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~----------------qKekev~d~~~rv~e~ 418 (456)
+|..|..++.+.. .++.++|+..-..+..+...|.+....+. +.+.++..++.++..+
T Consensus 26 ~~qqr~~qmseev------~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L 99 (617)
T PF15070_consen 26 QWQQRMQQMSEEV------RTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESL 99 (617)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 419 KARLSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 419 k~RL~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
.++|...-.....|+......+.++..+.
T Consensus 100 ~~qlqaqv~~ne~Ls~L~~EqEerL~ELE 128 (617)
T PF15070_consen 100 EEQLQAQVENNEQLSRLNQEQEERLAELE 128 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=21.03 E-value=3.2e+02 Score=21.89 Aligned_cols=45 Identities=13% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hHHhHHHHHHHHHHHHHhhhhH
Q 012816 388 ESTKKELESQMNELALKEKEVAG-LKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 388 e~~kkELEe~l~eL~qKekev~d-~~~rv~e~k~RL~~LE~ess~L 432 (456)
.++..=++..|..|.-+=+.+.+ +-.|+.+|-.||-+||.-...|
T Consensus 2 ~elt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 2 QELTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 499
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=21.02 E-value=3.1e+02 Score=24.73 Aligned_cols=64 Identities=27% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhHHHHHHHH
Q 012816 345 DVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMN--ELALKEKEVAGLKESVAKTKARL 422 (456)
Q Consensus 345 dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~--eL~qKekev~d~~~rv~e~k~RL 422 (456)
.|++|.=-|=||+.+|+++.+++ ..+.++.++|.+... +....+.++.....++.++-..|
T Consensus 4 Tl~EA~~lLP~l~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 66 (120)
T PF09969_consen 4 TLEEANALLPLLRPILEEIRELK-----------------AELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEI 66 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 012816 423 SDL 425 (456)
Q Consensus 423 ~~L 425 (456)
.++
T Consensus 67 ~~~ 69 (120)
T PF09969_consen 67 EEL 69 (120)
T ss_pred HHc
No 500
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=20.95 E-value=1e+03 Score=27.71 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHH
Q 012816 310 AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLES 389 (456)
Q Consensus 310 s~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~ 389 (456)
+.|++-|+ +.++..||....+.|..+-.. +--.|++..|.......+.+.++.. .-|+.
T Consensus 609 ~~~~~~l~-----------~~~t~~dL~~~a~~L~~la~~-~~~~~~~~~L~~~a~~l~~~~~~~v---------~pl~~ 667 (806)
T PF05478_consen 609 SLYLEQLC-----------KPLTPVDLPSLANQLEALANS-LPNGWLRNALKNEAQNLRAIQKELV---------SPLEQ 667 (806)
T ss_pred HHHHHHHh-----------CCCCCCCHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHH---------hhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 012816 390 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 442 (456)
Q Consensus 390 ~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSK 442 (456)
...+|.+.+..|... ..++...|...-+++.++|.....--..+..-.+|
T Consensus 668 ~~~~L~~~l~~L~~~---~~~l~~~i~~ll~~v~~aq~fL~~~~~~ii~~~~~ 717 (806)
T PF05478_consen 668 LVSKLNQSLKKLDSL---SSNLQNSINILLDAVQRAQDFLRNNGSEIINNESK 717 (806)
T ss_pred HHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Done!