Query 012816
Match_columns 456
No_of_seqs 144 out of 158
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 16:47:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 93.2 1.2 4.2E-05 45.4 13.9 55 389-443 527-581 (597)
2 1c1g_A Tropomyosin; contractIl 91.0 3.4 0.00012 36.0 12.3 19 414-432 84-102 (284)
3 2dfs_A Myosin-5A; myosin-V, in 90.9 1.9 6.5E-05 49.1 13.1 60 386-445 985-1048(1080)
4 3mq9_A Bone marrow stromal ant 90.0 2.7 9.4E-05 42.0 12.1 73 350-431 396-468 (471)
5 3hnw_A Uncharacterized protein 89.9 3.5 0.00012 36.6 11.4 41 386-426 90-130 (138)
6 3na7_A HP0958; flagellar bioge 87.6 3.3 0.00011 39.2 10.3 48 393-440 91-138 (256)
7 1m1j_B Fibrinogen beta chain; 87.6 2.6 9E-05 44.2 10.4 53 272-325 40-93 (464)
8 3hnw_A Uncharacterized protein 87.5 6.3 0.00022 34.9 11.3 55 383-437 80-134 (138)
9 3na7_A HP0958; flagellar bioge 86.3 11 0.00039 35.5 13.2 40 387-426 92-131 (256)
10 3vkg_A Dynein heavy chain, cyt 86.3 11 0.00039 47.7 16.4 50 310-361 1895-1944(3245)
11 3ol1_A Vimentin; structural ge 84.6 16 0.00056 31.2 12.2 14 348-361 45-58 (119)
12 4etp_A Kinesin-like protein KA 82.3 2.7 9.1E-05 42.8 7.4 60 387-446 5-64 (403)
13 3mq7_A Bone marrow stromal ant 81.7 22 0.00075 31.4 11.8 78 355-441 29-106 (121)
14 1wle_A Seryl-tRNA synthetase; 79.8 15 0.0005 38.6 12.1 40 407-446 117-156 (501)
15 3iv1_A Tumor susceptibility ge 79.1 16 0.00053 30.0 9.4 64 354-426 10-73 (78)
16 1c1g_A Tropomyosin; contractIl 79.0 31 0.0011 29.9 13.3 33 404-436 102-134 (284)
17 2dfs_A Myosin-5A; myosin-V, in 77.3 8.3 0.00028 44.0 9.9 9 22-30 453-461 (1080)
18 1m1j_C Fibrinogen gamma chain; 77.0 13 0.00044 38.3 10.4 59 387-445 79-137 (409)
19 2ve7_C Kinetochore protein NUF 76.8 24 0.00083 33.7 11.7 60 386-445 142-201 (250)
20 3qne_A Seryl-tRNA synthetase, 75.8 10 0.00034 39.9 9.4 37 410-446 75-111 (485)
21 3v6i_A V-type ATP synthase sub 75.8 41 0.0014 30.0 12.3 73 376-448 19-95 (187)
22 3s4r_A Vimentin; alpha-helix, 75.6 31 0.001 28.5 10.5 38 405-442 55-92 (93)
23 3nmd_A CGMP dependent protein 75.0 8.8 0.0003 31.1 6.8 47 387-447 21-67 (72)
24 1i84_S Smooth muscle myosin he 74.2 12 0.0004 42.7 10.1 14 275-288 718-731 (1184)
25 3ghg_A Fibrinogen alpha chain; 73.0 7.7 0.00026 41.5 7.7 48 400-447 103-151 (562)
26 3oja_B Anopheles plasmodium-re 71.9 19 0.00066 36.6 10.3 37 411-447 542-578 (597)
27 2b5u_A Colicin E3; high resolu 71.8 21 0.00073 38.1 10.6 62 386-447 315-376 (551)
28 1i84_S Smooth muscle myosin he 71.6 17 0.00059 41.3 10.7 8 22-29 480-487 (1184)
29 4ani_A Protein GRPE; chaperone 70.8 5.8 0.0002 37.7 5.6 58 399-456 59-116 (213)
30 1ic2_A Tropomyosin alpha chain 70.5 39 0.0013 26.9 10.7 65 374-445 9-73 (81)
31 2dq0_A Seryl-tRNA synthetase; 69.9 43 0.0015 34.5 12.3 38 410-447 73-110 (455)
32 3u06_A Protein claret segregat 69.1 11 0.00037 38.6 7.7 45 402-446 20-64 (412)
33 2dc3_A Cytoglobin; myoglobin, 68.6 66 0.0022 28.8 12.9 67 283-356 45-127 (193)
34 1u5p_A Spectrin alpha chain, b 68.3 50 0.0017 28.9 10.9 23 281-303 32-54 (216)
35 3gp4_A Transcriptional regulat 68.3 59 0.002 28.1 11.7 26 329-355 39-64 (142)
36 1ic2_A Tropomyosin alpha chain 68.2 44 0.0015 26.6 10.5 9 356-364 4-12 (81)
37 4h22_A Leucine-rich repeat fli 67.8 59 0.002 28.0 10.7 70 368-444 13-82 (103)
38 3ghg_A Fibrinogen alpha chain; 67.4 35 0.0012 36.7 11.1 14 354-367 92-105 (562)
39 3swk_A Vimentin; cytoskeleton, 67.4 49 0.0017 26.9 11.6 79 356-440 5-83 (86)
40 3r2p_A Apolipoprotein A-I; amp 67.1 18 0.00061 32.6 7.9 18 426-443 147-164 (185)
41 1ses_A Seryl-tRNA synthetase; 67.0 25 0.00084 35.9 9.8 37 410-446 68-104 (421)
42 2v71_A Nuclear distribution pr 66.9 81 0.0028 29.5 12.4 93 352-447 11-115 (189)
43 3u1c_A Tropomyosin alpha-1 cha 66.7 55 0.0019 27.2 11.9 11 422-432 81-91 (101)
44 3ghg_B Fibrinogen beta chain; 65.5 13 0.00046 39.0 7.5 153 272-440 36-190 (461)
45 3oja_A Leucine-rich immune mol 65.1 50 0.0017 33.0 11.4 37 407-443 436-472 (487)
46 3a7p_A Autophagy protein 16; c 64.9 84 0.0029 28.6 11.9 63 374-436 71-133 (152)
47 3vem_A Helicase protein MOM1; 64.3 28 0.00095 30.5 8.1 33 421-455 80-112 (115)
48 3lss_A Seryl-tRNA synthetase; 62.8 72 0.0025 33.5 12.5 35 412-446 109-144 (484)
49 2wt7_B Transcription factor MA 62.1 48 0.0016 27.7 8.9 26 321-347 9-34 (90)
50 1lwu_C Fibrinogen gamma chain; 61.9 16 0.00056 36.5 7.1 29 414-442 27-55 (323)
51 3uul_A Utrophin; spectrin repe 61.9 57 0.0019 25.7 10.7 6 354-359 16-21 (118)
52 2b9c_A Striated-muscle alpha t 61.5 89 0.003 27.8 12.4 42 404-445 85-126 (147)
53 2oqq_A Transcription factor HY 60.6 21 0.00073 26.3 5.7 35 403-437 7-41 (42)
54 2dq3_A Seryl-tRNA synthetase; 59.7 52 0.0018 33.5 10.5 36 411-446 73-108 (425)
55 1jf3_A Monomer hemoglobin comp 59.6 23 0.0008 29.7 6.8 43 284-326 28-76 (147)
56 2w83_C C-JUN-amino-terminal ki 59.6 33 0.0011 28.1 7.3 18 365-382 17-34 (77)
57 3pt8_A Hemoglobin II; oxygen c 59.2 25 0.00087 29.8 7.0 42 284-325 28-83 (152)
58 1x79_B RAB GTPase binding effe 59.0 72 0.0025 27.6 9.8 15 335-349 21-35 (112)
59 1q08_A Zn(II)-responsive regul 58.3 66 0.0023 25.3 9.2 15 340-354 6-20 (99)
60 1nfn_A Apolipoprotein E3; lipi 57.8 1.1E+02 0.0039 27.9 12.1 15 280-294 22-36 (191)
61 1mba_A Myoglobin; oxygen stora 57.8 25 0.00084 29.6 6.6 43 284-326 27-82 (147)
62 3uun_A Dystrophin; triple heli 57.7 67 0.0023 25.2 12.3 6 354-359 16-21 (119)
63 3s84_A Apolipoprotein A-IV; fo 57.4 54 0.0019 31.7 9.8 117 320-448 134-252 (273)
64 3u59_A Tropomyosin beta chain; 57.2 81 0.0028 26.0 12.0 23 414-436 73-95 (101)
65 1deq_A Fibrinogen (alpha chain 56.8 65 0.0022 33.3 10.5 6 294-299 41-46 (390)
66 3ghg_C Fibrinogen gamma chain; 56.8 44 0.0015 34.6 9.4 57 388-444 80-136 (411)
67 1it2_A Hemoglobin; hagfish, de 56.6 21 0.00073 30.4 6.1 42 284-325 35-88 (146)
68 2fxo_A Myosin heavy chain, car 56.2 96 0.0033 26.5 13.1 41 405-445 82-122 (129)
69 3pt8_B Hemoglobin III; oxygen 56.0 23 0.00078 30.1 6.2 42 284-325 28-83 (152)
70 3iv1_A Tumor susceptibility ge 55.6 79 0.0027 25.9 8.9 62 382-446 11-72 (78)
71 2p22_C Protein SRN2; endosome, 55.6 71 0.0024 29.7 9.8 51 387-437 88-152 (192)
72 2ocy_A RAB guanine nucleotide 55.4 1.2E+02 0.0042 27.5 12.3 23 423-445 111-133 (154)
73 3tnu_B Keratin, type II cytosk 55.4 65 0.0022 27.5 9.0 14 354-367 11-24 (129)
74 2jee_A YIIU; FTSZ, septum, coi 55.2 88 0.003 25.8 10.3 12 356-367 11-22 (81)
75 2zs0_A Extracellular giant hem 54.5 27 0.00094 29.4 6.4 43 284-326 29-80 (140)
76 1fzc_C Fibrin; blood coagulati 54.2 6.4 0.00022 39.4 2.7 49 397-445 2-50 (319)
77 1gqe_A Release factor 2, RF2; 53.8 1.3E+02 0.0044 30.7 12.2 33 334-367 9-41 (365)
78 2fxo_A Myosin heavy chain, car 53.7 1.1E+02 0.0036 26.3 14.0 51 387-440 74-124 (129)
79 4hrt_B Hemoglobin B chain; oxy 53.2 19 0.00064 30.9 5.2 42 284-325 37-89 (152)
80 2l5g_B Putative uncharacterize 52.3 23 0.0008 26.1 4.7 28 402-429 12-39 (42)
81 2jee_A YIIU; FTSZ, septum, coi 52.3 70 0.0024 26.4 8.1 14 418-431 53-66 (81)
82 3lax_A Phenylacetate-coenzyme 51.4 7 0.00024 31.3 2.1 32 268-302 3-34 (109)
83 3uux_B Mitochondrial division 51.3 99 0.0034 30.1 10.3 43 392-444 180-222 (242)
84 2wtg_A Globin-like protein; me 50.5 1.3E+02 0.0046 26.5 10.7 44 284-327 32-88 (159)
85 2dq0_A Seryl-tRNA synthetase; 50.5 93 0.0032 32.1 10.7 24 407-430 77-100 (455)
86 1ses_A Seryl-tRNA synthetase; 50.3 73 0.0025 32.4 9.8 27 405-431 70-96 (421)
87 3oja_A Leucine-rich immune mol 50.3 99 0.0034 30.9 10.7 7 355-361 367-373 (487)
88 1hlm_A Hemoglobin (cyano Met); 49.9 23 0.0008 30.2 5.3 43 283-325 36-91 (159)
89 1wle_A Seryl-tRNA synthetase; 49.6 1.4E+02 0.0048 31.3 12.0 23 407-429 124-146 (501)
90 1yhu_C Hemoglobin B1A chain; g 49.4 50 0.0017 28.0 7.3 64 284-354 34-108 (148)
91 3trt_A Vimentin; cytoskeleton, 48.8 83 0.0028 24.3 7.9 21 408-428 51-71 (77)
92 1sct_A Hemoglobin II (carbonmo 48.5 37 0.0013 28.8 6.3 43 284-326 35-88 (150)
93 2lhb_A Hemoglobin V (cyano Met 48.2 40 0.0014 28.6 6.5 43 284-326 35-91 (149)
94 1gmj_A ATPase inhibitor; coile 47.9 1.1E+02 0.0037 25.4 8.6 29 399-427 51-79 (84)
95 2xu6_A MDV1 coiled coil; prote 47.5 72 0.0025 25.8 7.4 43 392-444 24-66 (72)
96 2zs0_C Extracellular giant hem 47.2 41 0.0014 28.5 6.4 57 284-347 33-98 (147)
97 1x9f_B Erythrocruorin, globin 46.7 42 0.0014 28.3 6.4 43 284-326 31-82 (145)
98 2ocy_A RAB guanine nucleotide 46.3 1.7E+02 0.0058 26.5 11.4 34 413-446 115-148 (154)
99 2bk9_A CG9734-PA; oxygen trans 45.6 51 0.0018 28.0 6.8 41 284-324 25-77 (153)
100 1yhu_D Hemoglobin B2 chain; gl 45.4 52 0.0018 27.9 6.8 43 284-326 33-84 (149)
101 1cun_A Protein (alpha spectrin 44.9 1.5E+02 0.0052 25.5 12.5 22 281-302 29-50 (213)
102 1dkg_A Nucleotide exchange fac 44.6 46 0.0016 30.8 6.7 40 417-456 57-96 (197)
103 1deq_A Fibrinogen (alpha chain 44.6 1.5E+02 0.005 30.7 10.8 22 387-408 136-157 (390)
104 1m1j_C Fibrinogen gamma chain; 44.6 2.1E+02 0.0072 29.4 12.2 13 335-347 39-51 (409)
105 1yhu_B Giant hemoglobins B cha 44.4 44 0.0015 28.0 6.1 43 284-326 31-82 (144)
106 4ad8_A DNA repair protein RECN 44.3 1.7E+02 0.0057 29.8 11.4 46 272-320 129-177 (517)
107 3i00_A HIP-I, huntingtin-inter 44.1 81 0.0028 27.4 7.8 45 384-431 14-58 (120)
108 1q06_A Transcriptional regulat 43.5 75 0.0026 27.0 7.5 25 329-354 37-61 (135)
109 2no2_A HIP-I, huntingtin-inter 43.5 1.5E+02 0.0051 25.1 10.3 47 386-432 55-101 (107)
110 1gdj_A Leghemoglobin (deoxy); 43.2 1.4E+02 0.0049 24.8 13.0 68 284-357 27-108 (153)
111 3lb2_A Dehaloperoxidase A; glo 43.1 25 0.00086 30.2 4.4 43 284-326 18-73 (137)
112 4emc_A Monopolin complex subun 43.0 85 0.0029 29.5 8.2 58 377-434 12-69 (190)
113 2zs0_B Extracellular giant hem 43.0 52 0.0018 27.6 6.4 43 284-326 29-80 (142)
114 1sct_B Hemoglobin II (carbonmo 42.9 31 0.0011 29.3 4.9 42 284-325 36-88 (151)
115 2vyw_A Hemoglobin; trematode, 42.8 47 0.0016 28.4 6.1 43 284-326 30-85 (148)
116 1x9f_A Globin IV, extracellula 42.6 46 0.0016 28.5 6.0 57 284-347 36-101 (151)
117 2nrl_A Myoglobin; transport pr 42.6 1.5E+02 0.0053 24.9 10.0 42 284-325 23-77 (147)
118 3vkg_A Dynein heavy chain, cyt 42.5 1.4E+02 0.0047 38.4 12.1 58 387-444 2016-2073(3245)
119 1h97_A Globin-3; HET: HEM; 1.1 42.5 41 0.0014 28.8 5.7 42 284-325 29-83 (147)
120 1gmj_A ATPase inhibitor; coile 42.0 1.2E+02 0.0041 25.2 8.0 22 419-440 57-78 (84)
121 3o0z_A RHO-associated protein 41.4 2.1E+02 0.0074 26.3 11.5 77 368-445 70-154 (168)
122 1hlb_A Hemoglobin (deoxy); oxy 41.4 17 0.00057 31.1 3.0 43 283-325 36-91 (158)
123 1q08_A Zn(II)-responsive regul 41.2 80 0.0027 24.8 6.8 6 449-454 82-87 (99)
124 2v66_B Nuclear distribution pr 40.9 1.8E+02 0.006 25.1 10.9 13 350-362 16-28 (111)
125 1m1j_B Fibrinogen beta chain; 40.5 3.2E+02 0.011 28.6 12.9 9 418-426 180-188 (464)
126 2vhb_A Hemoglobin; heme, respi 40.3 1.6E+02 0.0054 24.4 10.6 44 284-327 26-72 (146)
127 3tnu_A Keratin, type I cytoske 39.7 1.5E+02 0.0052 25.3 8.8 14 354-367 13-26 (131)
128 1fxk_A Prefoldin; archaeal pro 39.6 1.4E+02 0.0049 23.8 9.4 32 413-444 72-103 (107)
129 3g46_A Globin-1; oxygen transp 39.6 57 0.0019 27.7 6.1 43 284-326 34-87 (146)
130 3etw_A Adhesin A; antiparallel 39.5 1.9E+02 0.0066 25.2 10.3 52 396-447 48-102 (119)
131 2yy0_A C-MYC-binding protein; 39.3 30 0.001 26.1 3.8 12 412-423 39-50 (53)
132 1ci6_A Transcription factor AT 39.2 1.3E+02 0.0044 23.0 7.8 35 403-437 27-61 (63)
133 1b0b_A Hemoglobin; hemoprotein 38.8 39 0.0013 28.3 4.9 42 284-325 26-81 (142)
134 3htk_A Structural maintenance 38.6 1.2E+02 0.0039 22.4 7.7 22 389-410 30-51 (60)
135 1kd8_B GABH BLL, GCN4 acid bas 38.0 46 0.0016 23.8 4.2 23 414-436 9-31 (36)
136 1ith_A Hemoglobin (cyano Met); 37.9 38 0.0013 28.4 4.6 41 284-324 27-80 (141)
137 1x3k_A Hemoglobin component V; 37.9 74 0.0025 27.2 6.6 42 284-325 29-83 (152)
138 2c0k_A Hemoglobin; oxygen tran 37.4 64 0.0022 27.4 6.1 41 284-324 25-78 (151)
139 3bas_A Myosin heavy chain, str 37.0 1.7E+02 0.0057 23.7 10.8 27 415-441 58-84 (89)
140 2a01_A Apolipoprotein A-I; fou 37.0 1.1E+02 0.0037 28.7 8.1 13 431-443 195-207 (243)
141 4etp_A Kinesin-like protein KA 36.8 57 0.002 33.1 6.5 10 387-396 26-35 (403)
142 1cqx_A Flavohemoprotein; globi 36.4 3E+02 0.01 26.6 11.4 43 284-326 26-71 (403)
143 1x9f_D Globin C, hemoglobin ch 36.4 73 0.0025 26.6 6.2 43 284-326 29-80 (140)
144 1yhu_A Hemoglobin A1 chain; gl 36.4 62 0.0021 27.5 5.8 43 284-326 29-80 (145)
145 3gpv_A Transcriptional regulat 36.3 2E+02 0.007 24.7 9.2 25 329-354 53-77 (148)
146 2lem_A Apolipoprotein A-I; lip 36.2 2.6E+02 0.0088 25.7 12.4 38 329-366 30-69 (216)
147 1deb_A APC protein, adenomatou 36.2 1.4E+02 0.0047 22.9 6.9 33 411-443 22-54 (54)
148 2zqm_A Prefoldin beta subunit 36.1 1.7E+02 0.0059 23.6 9.9 33 413-445 77-109 (117)
149 3ubc_A Hemoglobin-like flavopr 36.0 85 0.0029 25.7 6.5 44 284-327 25-68 (131)
150 1kd8_B GABH BLL, GCN4 acid bas 35.9 60 0.002 23.2 4.5 32 387-418 3-34 (36)
151 1nfn_A Apolipoprotein E3; lipi 35.8 45 0.0015 30.5 5.1 17 427-443 165-181 (191)
152 1x9f_C Erythrocruorin, globin 35.7 58 0.002 27.8 5.6 58 284-348 37-103 (153)
153 1x46_A Globin chain, hemoglobi 35.6 74 0.0025 26.8 6.1 42 284-325 27-81 (150)
154 2w83_C C-JUN-amino-terminal ki 35.6 1.8E+02 0.0063 23.8 8.5 14 416-429 61-74 (77)
155 4fla_A Regulation of nuclear P 35.5 2.4E+02 0.0082 25.2 9.7 13 315-327 26-38 (152)
156 2yy0_A C-MYC-binding protein; 35.4 48 0.0017 25.0 4.4 6 387-392 21-26 (53)
157 1sfc_D Protein (SNAP-25B), pro 35.3 1.7E+02 0.0059 23.4 8.7 39 411-449 48-86 (87)
158 1jeb_A Hemoglobin zeta chain; 34.7 80 0.0027 26.4 6.2 42 284-325 27-76 (142)
159 3lss_A Seryl-tRNA synthetase; 34.6 2E+02 0.0067 30.2 10.3 25 408-432 113-137 (484)
160 3q8t_A Beclin-1; autophagy, AT 34.5 2E+02 0.0067 23.8 12.5 31 416-446 63-93 (96)
161 3u1c_A Tropomyosin alpha-1 cha 34.3 2E+02 0.0068 23.8 13.1 20 374-393 12-31 (101)
162 3uul_A Utrophin; spectrin repe 34.2 1.7E+02 0.0057 22.9 11.4 32 336-367 18-49 (118)
163 1bin_A Leghemoglobin A; heme, 34.2 40 0.0014 27.8 4.2 67 284-358 27-104 (143)
164 3p8c_E Probable protein brick1 34.2 1.5E+02 0.0052 24.1 7.3 47 399-445 23-70 (75)
165 1lhs_A Myoglobin; oxygen stora 33.8 30 0.001 29.7 3.4 42 284-325 26-81 (153)
166 3d1k_A Hemoglobin subunit alph 33.8 95 0.0032 26.1 6.5 42 284-325 26-76 (142)
167 3mq7_A Bone marrow stromal ant 33.7 1.5E+02 0.0052 26.1 7.8 17 330-346 28-44 (121)
168 1t3j_A Mitofusin 1; coiled coi 33.7 1.6E+02 0.0055 24.9 7.7 49 384-432 42-90 (96)
169 2b9c_A Striated-muscle alpha t 33.6 2.5E+02 0.0087 24.8 11.2 32 414-445 74-105 (147)
170 3uun_A Dystrophin; triple heli 33.2 1.7E+02 0.0058 22.7 11.2 32 336-367 18-49 (119)
171 2efr_A General control protein 33.1 2.7E+02 0.0094 25.1 13.3 17 392-408 73-89 (155)
172 4dnd_A Syntaxin-10, SYN10; str 33.1 1.5E+02 0.0051 25.8 7.8 24 399-422 105-128 (130)
173 4dk0_A Putative MACA; alpha-ha 32.8 1.7E+02 0.0058 27.7 8.8 17 439-455 148-164 (369)
174 2xzr_A Immunoglobulin-binding 32.8 2.4E+02 0.0082 24.3 11.8 45 393-437 63-107 (114)
175 3mvc_A Globin protein 6; oxyge 32.8 2.2E+02 0.0076 24.6 8.9 44 284-327 28-79 (161)
176 3s4r_A Vimentin; alpha-helix, 32.6 2.1E+02 0.0071 23.5 10.2 38 385-422 56-93 (93)
177 4dbg_B Ring finger protein 31; 32.5 1.2E+02 0.004 28.0 7.2 47 317-367 15-61 (162)
178 3kqg_A Langerin, C-type lectin 32.3 49 0.0017 28.3 4.5 34 395-428 5-38 (182)
179 4h22_A Leucine-rich repeat fli 32.2 2.4E+02 0.0083 24.2 9.2 31 331-367 16-46 (103)
180 1a6m_A Myoglobin; heme protein 31.5 2.4E+02 0.0081 23.9 11.0 43 284-326 26-82 (151)
181 3nmd_A CGMP dependent protein 31.3 1.2E+02 0.0041 24.5 6.2 13 399-411 47-59 (72)
182 1ash_A Hemoglobin (OXY); oxyge 31.2 93 0.0032 27.5 6.2 44 284-327 28-84 (150)
183 1q1f_A Neuroglobin; globin fol 31.1 1.2E+02 0.004 25.2 6.6 43 284-326 25-82 (151)
184 3pp5_A BRK1, protein brick1; t 31.0 1.7E+02 0.0059 23.6 7.2 39 406-444 30-69 (73)
185 2qyw_A Vesicle transport throu 30.8 2.3E+02 0.0077 23.4 8.2 20 391-410 55-74 (102)
186 3mq9_A Bone marrow stromal ant 30.7 4E+02 0.014 26.3 14.1 58 389-446 401-469 (471)
187 2aze_B Transcription factor E2 30.7 61 0.0021 27.4 4.7 57 391-451 8-67 (106)
188 3lay_A Zinc resistance-associa 30.7 1.6E+02 0.0055 26.9 7.9 35 412-450 112-146 (175)
189 3bom_B Hemoglobin subunit beta 30.6 83 0.0028 26.8 5.7 41 284-324 25-79 (147)
190 1f5n_A Interferon-induced guan 30.4 5.2E+02 0.018 27.5 15.1 16 427-442 567-582 (592)
191 3bom_A Hemoglobin subunit alph 30.3 1E+02 0.0035 25.9 6.2 53 284-346 27-88 (143)
192 3etw_A Adhesin A; antiparallel 29.9 2.5E+02 0.0085 24.5 8.5 50 390-439 10-60 (119)
193 3qne_A Seryl-tRNA synthetase, 29.8 1.9E+02 0.0065 30.4 9.2 20 410-429 82-101 (485)
194 2iak_A Bullous pemphigoid anti 29.6 3E+02 0.01 24.5 9.7 81 283-363 51-143 (224)
195 2eqb_B RAB guanine nucleotide 29.4 2.6E+02 0.0089 23.7 8.3 12 353-364 7-18 (97)
196 2r80_B Hemoglobin subunit beta 29.3 52 0.0018 27.8 4.2 41 284-324 25-79 (146)
197 3d1k_B Hemoglobin subunit beta 29.3 81 0.0028 26.8 5.4 41 284-324 25-79 (146)
198 2a01_A Apolipoprotein A-I; fou 29.3 3.5E+02 0.012 25.2 12.8 29 413-441 154-183 (243)
199 3qh9_A Liprin-beta-2; coiled-c 29.3 2.4E+02 0.0083 23.3 8.0 30 379-408 41-70 (81)
200 4fla_A Regulation of nuclear P 29.1 3.1E+02 0.011 24.4 13.5 22 411-432 119-140 (152)
201 1out_A Hemoglobin I; heme, oxy 28.7 1E+02 0.0036 26.0 6.0 41 284-324 27-76 (143)
202 2w72_C Human hemoglobin A; iro 28.6 70 0.0024 26.7 4.8 42 284-325 26-75 (141)
203 2zs0_D Extracellular giant hem 28.6 2.4E+02 0.0083 24.0 8.3 59 284-349 33-98 (145)
204 3r2p_A Apolipoprotein A-I; amp 28.5 2.2E+02 0.0076 25.3 8.4 9 319-327 30-38 (185)
205 1xq5_A Hemoglobin alpha-1 chai 28.4 66 0.0022 27.2 4.6 41 284-324 27-76 (143)
206 3ci9_A Heat shock factor-bindi 28.2 1E+02 0.0035 23.0 5.0 31 397-427 14-45 (48)
207 1out_B Hemoglobin I; heme, oxy 27.7 83 0.0028 26.8 5.2 41 284-324 25-79 (146)
208 2dq3_A Seryl-tRNA synthetase; 27.7 79 0.0027 32.1 5.8 22 408-429 77-98 (425)
209 3nr7_A DNA-binding protein H-N 27.4 1.9E+02 0.0066 23.7 7.0 10 352-361 25-34 (86)
210 2lw1_A ABC transporter ATP-bin 27.2 2.4E+02 0.0082 22.5 8.3 47 389-435 26-78 (89)
211 2e7s_A RAB guanine nucleotide 27.2 92 0.0032 27.8 5.4 15 387-401 65-79 (135)
212 2pnv_A Small conductance calci 27.1 72 0.0025 23.4 3.9 25 411-435 14-38 (43)
213 4g1v_A Flavohemoglobin; three 27.1 3.8E+02 0.013 25.9 10.4 43 285-327 27-72 (399)
214 1n7s_D SNAP-25A; neuronal snar 26.7 2E+02 0.007 21.6 7.9 36 412-447 30-65 (66)
215 2oif_A Horvu GLB1, non-legume 26.7 2.8E+02 0.0097 23.2 11.0 67 284-358 34-117 (162)
216 1l4a_D S-SNAP25 fusion protein 26.3 1.6E+02 0.0055 23.8 6.3 37 412-448 50-86 (87)
217 3gxs_A Phenylacetate-coenzyme 26.2 28 0.00097 28.0 1.8 33 268-303 3-35 (109)
218 3u06_A Protein claret segregat 26.0 98 0.0033 31.6 6.1 14 354-367 6-19 (412)
219 2wy4_A Single domain haemoglob 25.9 2.7E+02 0.0092 22.7 11.8 43 285-327 26-71 (140)
220 1spg_A Hemoglobin; carbon mono 25.6 1.7E+02 0.006 24.6 6.8 54 284-347 27-90 (144)
221 1gd2_E Transcription factor PA 25.5 1.2E+02 0.004 24.2 5.2 10 392-401 32-41 (70)
222 1cg5_A Protein (hemoglobin); o 25.3 96 0.0033 26.1 5.1 40 284-323 26-74 (141)
223 1go4_E MAD1 (mitotic arrest de 25.0 90 0.0031 26.5 4.7 32 414-445 13-44 (100)
224 1x79_B RAB GTPase binding effe 24.8 3.4E+02 0.012 23.5 9.0 24 414-437 46-69 (112)
225 1m1j_A Fibrinogen alpha subuni 24.8 6.5E+02 0.022 26.7 12.0 15 354-368 93-107 (491)
226 1g6u_A Domain swapped dimer; d 24.7 68 0.0023 23.6 3.4 25 421-445 21-45 (48)
227 1v4x_B Hemoglobin beta chain; 24.4 87 0.003 26.6 4.7 41 284-324 25-79 (146)
228 2aa1_B Hemoglobin beta-C chain 24.1 97 0.0033 26.3 4.9 41 284-324 25-79 (146)
229 1m1j_A Fibrinogen alpha subuni 24.1 5.8E+02 0.02 27.1 11.4 45 386-433 108-152 (491)
230 3iyk_A VP5; icosahedral virus; 23.7 7E+02 0.024 26.7 13.0 51 315-367 73-130 (526)
231 1dip_A Delta-sleep-inducing pe 23.3 46 0.0016 27.3 2.5 29 407-435 16-44 (78)
232 1gvh_A Flavohemoprotein; oxido 23.3 3.5E+02 0.012 26.0 9.3 44 284-327 26-72 (396)
233 4hrt_A Globin-2 A chain; oxyge 23.3 1.6E+02 0.0054 25.0 6.1 42 284-325 35-87 (150)
234 1gcv_B Hemoglobin; oxygen stor 23.1 1.4E+02 0.0049 25.2 5.8 42 284-325 25-70 (136)
235 3efg_A Protein SLYX homolog; x 23.1 2E+02 0.007 23.0 6.3 23 404-426 40-62 (78)
236 4e81_A Chaperone protein DNAK; 23.1 4.4E+02 0.015 24.2 10.7 18 330-347 118-135 (219)
237 2no2_A HIP-I, huntingtin-inter 22.9 3.4E+02 0.012 22.8 12.0 15 387-401 27-41 (107)
238 3hh0_A Transcriptional regulat 22.9 3.1E+02 0.011 23.6 8.0 25 329-354 41-65 (146)
239 1u4q_A Spectrin alpha chain, b 22.9 4.4E+02 0.015 24.1 12.2 137 284-425 141-320 (322)
240 3u59_A Tropomyosin beta chain; 22.7 3.2E+02 0.011 22.3 13.3 20 374-393 12-31 (101)
241 1r8e_A Multidrug-efflux transp 22.6 1.9E+02 0.0064 26.4 6.9 24 330-354 44-67 (278)
242 2a3d_A Protein (de novo three- 22.6 87 0.003 24.7 3.9 41 409-449 5-48 (73)
243 2r80_A Hemoglobin subunit alph 22.4 1.1E+02 0.0036 25.9 4.8 41 284-324 26-74 (141)
244 1fxk_C Protein (prefoldin); ar 22.4 2.6E+02 0.0088 23.4 7.2 16 333-348 31-46 (133)
245 1lwu_C Fibrinogen gamma chain; 21.9 2E+02 0.007 28.6 7.4 8 417-424 44-51 (323)
246 3lay_A Zinc resistance-associa 21.6 2E+02 0.007 26.2 6.8 8 389-396 96-103 (175)
247 4etp_B Spindle POLE BODY-assoc 21.5 2.3E+02 0.0078 28.8 7.6 54 387-447 12-65 (333)
248 4e61_A Protein BIM1; EB1-like 21.4 1.6E+02 0.0055 25.3 5.7 36 394-429 6-41 (106)
249 4b9q_A Chaperone protein DNAK; 21.4 4.6E+02 0.016 27.4 10.3 19 329-347 505-523 (605)
250 3o0z_A RHO-associated protein 21.2 4.8E+02 0.017 23.9 12.3 49 368-416 52-100 (168)
251 3mkb_A Hemoglobin subunit alph 21.1 2.3E+02 0.008 24.1 6.8 54 284-347 26-87 (140)
252 2zvf_A Alanyl-tRNA synthetase; 21.1 2.5E+02 0.0084 24.2 7.0 19 353-371 6-24 (171)
253 3caz_A BAR protein; thermo-aci 21.0 4.7E+02 0.016 25.1 9.3 14 413-426 149-162 (294)
254 2ovc_A Potassium voltage-gated 21.0 91 0.0031 21.8 3.3 23 417-439 7-29 (33)
255 3ol1_A Vimentin; structural ge 20.9 3.8E+02 0.013 22.6 9.9 81 354-440 23-103 (119)
256 1c7c_A Protein (deoxyhemoglobi 20.8 1.6E+02 0.0055 27.6 6.1 41 284-324 168-216 (283)
257 2vxg_A LD41624, GE-1, CG6181-P 20.8 56 0.0019 28.9 2.8 57 281-362 26-85 (139)
258 3ilw_A DNA gyrase subunit A; D 20.3 7E+02 0.024 26.2 11.3 104 16-134 37-156 (470)
259 2w72_B Human hemoglobin A; iro 20.2 2.7E+02 0.0091 23.4 6.9 62 284-355 25-102 (146)
260 1et1_A Parathyroid hormone; he 20.2 83 0.0028 22.2 2.9 22 338-363 10-31 (34)
261 2b5u_A Colicin E3; high resolu 20.1 8.3E+02 0.028 26.3 11.8 34 329-367 289-322 (551)
262 3a6m_A Protein GRPE, HSP-70 co 20.1 3.8 0.00013 37.6 -5.0 50 407-456 27-76 (177)
263 3lof_A Heat shock 70 kDa prote 20.0 3.5E+02 0.012 21.9 8.7 24 329-358 32-55 (113)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.16 E-value=1.2 Score=45.42 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 012816 389 STKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 443 (456)
Q Consensus 389 ~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV 443 (456)
..+++++++.+++...++++.+++.+++++++++.++..+.+.+.+-+..+..|+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555666666667777777777778888777777777655444444443
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=91.03 E-value=3.4 Score=36.05 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHhhhhH
Q 012816 414 SVAKTKARLSDLELESNRL 432 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L 432 (456)
++..+..++..++.+...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 84 DVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.87 E-value=1.9 Score=49.06 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhH----HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESV----AKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv----~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
.+..+.+|+++.-+++....+|.++..++. .++.+++..|+.+...|.+.+.++.+.+.+
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333 355577777888888888888887765443
No 4
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.98 E-value=2.7 Score=42.00 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=38.1
Q ss_pred CcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 012816 350 QIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES 429 (456)
Q Consensus 350 gfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~es 429 (456)
.=...||+++|+|+...- .+++.+-..|-+.+-++..-||. +.+|-++.|++...+|++....|.+++.+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDA---EKAQGQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhH------HHHHHHhhhcchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567888888766544 44444445555555555555543 334444455554444455544444444443
Q ss_pred hh
Q 012816 430 NR 431 (456)
Q Consensus 430 s~ 431 (456)
.+
T Consensus 467 ~~ 468 (471)
T 3mq9_A 467 ER 468 (471)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 5
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.94 E-value=3.5 Score=36.56 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE 426 (456)
.+..++.++.+....+....+++.++++++.++..++++||
T Consensus 90 E~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 90 EIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.62 E-value=3.3 Score=39.18 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 012816 393 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 393 ELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~k 440 (456)
|++....++....+++.++..++.+.-+++..++.....+...+..++
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~ 138 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE 138 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344443444444444444444444444444444444443333
No 7
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=87.61 E-value=2.6 Score=44.17 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=18.3
Q ss_pred EEeccEEeeccchHHH-HHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhc
Q 012816 272 VSVGKYHVRASISSIL-QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQS 325 (456)
Q Consensus 272 v~VnGFqVl~Sqv~iV-~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~k 325 (456)
|+-+||+++|..++.- ++=.++++--|-+|+.-++.|=++|=. =|.|-.+|.+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~c~~~~~~~G~~CPT-tC~l~D~L~k 93 (464)
T 1m1j_B 40 ISGTGYQPRPPKQDKQAMKKGPIIYPDAGGCKHPLDELGVLCPT-GCELQTTLLK 93 (464)
T ss_dssp -----------------------CCCCCSCEECSSTTTCEEEEC-TTHHHHHHHH
T ss_pred cCCCCcCCCCCCCcchhhccCcccCCCCCCccccCCCccCcCCC-ccHHHHHHHH
Confidence 7789999999888775 444555555577777766665554422 3666666653
No 8
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.47 E-value=6.3 Score=34.87 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 012816 383 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 437 (456)
Q Consensus 383 ~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~ 437 (456)
.+..++.+.+|+...-.+|.....+.......+++.+.++..|+.+..+|+..+.
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666677777777777777777777777777777777777777777765544
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.34 E-value=11 Score=35.47 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE 426 (456)
+.++.+||+..-......++++.++-+++.+..+.+..++
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~ 131 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444344433333333333
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.31 E-value=11 Score=47.66 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 012816 310 AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 361 (456)
Q Consensus 310 s~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLe 361 (456)
+.||+.|-.-...|.+.- ++|.. .......-|.-|.++.-.|+=|+..|.
T Consensus 1895 ~syLeli~~y~~ll~~K~-~el~~-~~~rl~~GL~KL~et~~~V~~l~~~L~ 1944 (3245)
T 3vkg_A 1895 RHYLDFINQVVLLINEKR-DQLEE-EQLHLNIGLKKLRDTEAQVKDLQVSLA 1944 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457776666555555444 44433 122222333333344444444444443
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.63 E-value=16 Score=31.21 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=5.5
Q ss_pred hcCcchhhhhhHHH
Q 012816 348 SAQIDVDWLRNILN 361 (456)
Q Consensus 348 ~agfKVDWLekKLe 361 (456)
++.--++.++.|++
T Consensus 45 n~~~~~edfk~KyE 58 (119)
T 3ol1_A 45 NLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH
Confidence 33333344444443
No 12
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=82.32 E-value=2.7 Score=42.78 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
+.+++.+|+...+++.+.+.++++++.++.++.++|.+.+.++-+|.-.+.++|.+|+=|
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 445556666666666777777777788889999999999999999999999999887655
No 13
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.69 E-value=22 Score=31.35 Aligned_cols=78 Identities=22% Similarity=0.275 Sum_probs=49.5
Q ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 012816 355 WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 434 (456)
Q Consensus 355 WLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~ 434 (456)
-|+..|....+.- ...+.+-..|-+.+..++.-|+++ -++.++.+++++..|+.+...|.+++++..+|..
T Consensus 29 lLq~qLTqAQe~l------~~~eaQAaTCNqTV~tL~~SL~~e---kaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 29 LLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDAE---KAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555444322 233444556777777777666643 3444667778778888888888888888887766
Q ss_pred HHHHhhh
Q 012816 435 IIQATQS 441 (456)
Q Consensus 435 ~v~~~kS 441 (456)
-...+..
T Consensus 100 ~~~~~~~ 106 (121)
T 3mq7_A 100 ENQVLSV 106 (121)
T ss_dssp HHHHHHH
T ss_pred hchhhhh
Confidence 5554444
No 14
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=79.76 E-value=15 Score=38.65 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=24.8
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 407 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
++.++++++.+++++|.+|+.+...++..+..+=..+=+.
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3344566677777777777777777766665554444443
No 15
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=79.06 E-value=16 Score=30.03 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=37.4
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 012816 354 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 354 DWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE 426 (456)
|=|+.||.|...-- ++.++.-+ .....+....++|+.++..|.+.+.++.. -|.-++++..+|+
T Consensus 10 DKLRrrl~E~~~q~-----qaEl~sLr-rT~~EL~~G~~KL~~mi~~l~~E~~~l~~---ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 10 DKLRWRMKEEMDRA-----QAELNALK-RTEEDLKKGHQKLEEMVTRLDQEVAEVDK---NIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 55677776543322 12222222 23345666678888888888777776666 5556666666555
No 16
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=79.04 E-value=31 Score=29.87 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=13.2
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 012816 404 KEKEVAGLKESVAKTKARLSDLELESNRLEQII 436 (456)
Q Consensus 404 Kekev~d~~~rv~e~k~RL~~LE~ess~L~~~v 436 (456)
...++.++..++.+...+|..++.....+...+
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 134 (284)
T 1c1g_A 102 AQERLATALQKLEEAEKAADESERGMKVIESRA 134 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444433333333
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.30 E-value=8.3 Score=43.96 Aligned_cols=9 Identities=11% Similarity=0.165 Sum_probs=4.8
Q ss_pred hHHHHHHHh
Q 012816 22 CGERCFKRN 30 (456)
Q Consensus 22 Cs~~C~~~~ 30 (456)
|..||-+++
T Consensus 453 cINy~NEkL 461 (1080)
T 2dfs_A 453 CINYANEKL 461 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhHHH
Confidence 555555544
No 18
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=76.98 E-value=13 Score=38.34 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
.+.+.+...+|++++.+.|..+....++|..++..|..++.+...|.+.|..+..++..
T Consensus 79 ~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 79 IEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 34445666777777777777777777777888888777776667776666666665543
No 19
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=76.81 E-value=24 Score=33.72 Aligned_cols=60 Identities=5% Similarity=-0.036 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
..++.-++.|+.++++.+++.+..+++.++.+++.++.+.+.+.....+.+..|.-+|.+
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~ 201 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSK 201 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 345555666777777777777777777788888888777776666555566666666554
No 20
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=75.83 E-value=10 Score=39.92 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=23.3
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 410 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 410 d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
++++++.+++++|.+||.+...++..+..+=..+=+.
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 111 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNI 111 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455667777777777777777766665554444443
No 21
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=75.75 E-value=41 Score=29.98 Aligned_cols=73 Identities=8% Similarity=0.125 Sum_probs=41.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHhH---HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816 376 IDAAKANCVNLLESTKKELESQMNELALK-EKEVAGLKESV---AKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 448 (456)
Q Consensus 376 ~e~eKe~~dr~~e~~kkELEe~l~eL~qK-ekev~d~~~rv---~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~ 448 (456)
+.++++.-+.++++.+++.+...++..++ +.+....++|+ ..+..|+..|.....=+...+..++.++..|.+
T Consensus 19 ~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~L~~~~~ 95 (187)
T 3v6i_A 19 LQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREALEALPQ 95 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 33444445556666666666554433332 23333332332 455666666776666677777777777777754
No 22
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=75.56 E-value=31 Score=28.54 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=25.0
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 012816 405 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 442 (456)
Q Consensus 405 ekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSK 442 (456)
+.++.+++.+|.+....=++|+.+...|..-+..+|.|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666666666666666666666666665
No 23
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.05 E-value=8.8 Score=31.10 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
+.+++..|++..++|.+++..+++ ...+|.+.+. .|..+++.+++|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~e-------LEk~L~ekd~-------eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDE-------LELELDQKDE-------LIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 555555566555666665544433 4444444443 3444677777773
No 24
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=74.18 E-value=12 Score=42.67 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=7.3
Q ss_pred ccEEeeccchHHHH
Q 012816 275 GKYHVRASISSILQ 288 (456)
Q Consensus 275 nGFqVl~Sqv~iV~ 288 (456)
.||.++..+.++++
T Consensus 718 ~Gfp~R~~~~~F~~ 731 (1184)
T 1i84_S 718 QGFPNRIVFQEFRQ 731 (1184)
T ss_dssp HSCCEEEEHHHHHH
T ss_pred hcCcccccHHHHHH
Confidence 45555555554444
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.98 E-value=7.7 Score=41.54 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=29.7
Q ss_pred HHHHHHHHHh-hhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 400 ELALKEKEVA-GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 400 eL~qKekev~-d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
++...-.|+. |++.+|..++.+|.+--....-|..+|.++.+||.|++
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555 46666666666665554555566777777777777653
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.93 E-value=19 Score=36.62 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=19.9
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 411 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
.++++.+++.++.+.+....++.+-+..++.++.+++
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555543
No 27
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=71.83 E-value=21 Score=38.06 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
-++.+++++|+-..||.+.++.++..++|+...-.=+..+.++.-.+.++|.++.-=+++|.
T Consensus 315 p~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~ 376 (551)
T 2b5u_A 315 PVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFN 376 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhh
Confidence 35666666777777777778888888888777777777777777778888888887788775
No 28
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=71.56 E-value=17 Score=41.33 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=3.6
Q ss_pred hHHHHHHH
Q 012816 22 CGERCFKR 29 (456)
Q Consensus 22 Cs~~C~~~ 29 (456)
|..||-++
T Consensus 480 ciNy~nEk 487 (1184)
T 1i84_S 480 CINYTNEK 487 (1184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 29
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=70.80 E-value=5.8 Score=37.66 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 399 NELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 399 ~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
.++...+.++.+++.++.++++++-++..+..++.++..-=+....+|...+|+-+||
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LL 116 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLL 116 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666778888888999999888888888888888888888888887765
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=70.46 E-value=39 Score=26.89 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=36.1
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 374 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 374 ~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
++++.++++.....+.+..+++..-..+.+.+. -|..+.-|+..||.+..+....+..+..|++.
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~-------ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLED-------ELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544455555555544344444444 45556666666666666666666666666654
No 31
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=69.91 E-value=43 Score=34.55 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=23.7
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 410 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 410 d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
++++++.+++++|.+|+.+...++..+..+=..+=+..
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34556666777777777777777666655555544443
No 32
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=69.11 E-value=11 Score=38.56 Aligned_cols=45 Identities=11% Similarity=0.131 Sum_probs=33.4
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 402 ALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 402 ~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.+.+.++++..+.+.+++++|.+.++++-+|.-.|.+++-.|+=|
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~ 64 (412)
T 3u06_A 20 EELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVF 64 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 333444444455777888889999999999999999998877644
No 33
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=68.64 E-value=66 Score=28.82 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=45.2
Q ss_pred chHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH-
Q 012816 283 ISSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE- 347 (456)
Q Consensus 283 qv~iV~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~- 347 (456)
-..++.++|+.||++-.-|.- .|+.++. .+|..|..+|..|.... .|..+...|...=
T Consensus 45 g~~~y~rlF~~~P~~k~~F~~f~d~~~~~~l~~n~~~~~h~~~v~~al~~~v~~Ldd~~-------~l~~~l~~L~~~H~ 117 (193)
T 2dc3_A 45 GVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPD-------KVSSVLALVGKAHA 117 (193)
T ss_dssp HHHHHHHHHHHCGGGGGGCTTTTTCCCHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHhccCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHHH
Confidence 357899999999999888864 5666665 57788888887775432 4556666665544
Q ss_pred -hcCcchhhh
Q 012816 348 -SAQIDVDWL 356 (456)
Q Consensus 348 -~agfKVDWL 356 (456)
..||+-+-.
T Consensus 118 ~~~gV~p~~f 127 (193)
T 2dc3_A 118 LKHKVEPVYF 127 (193)
T ss_dssp HTSCCCHHHH
T ss_pred HHcCCCHHHH
Confidence 346654433
No 34
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=68.28 E-value=50 Score=28.86 Aligned_cols=23 Identities=4% Similarity=0.069 Sum_probs=16.7
Q ss_pred ccchHHHHHHHhhcccccccCcc
Q 012816 281 ASISSILQSIISRYGDIAANCNL 303 (456)
Q Consensus 281 ~Sqv~iV~~IFeKHpDIAsnf~l 303 (456)
+.-+..|+.++.||-.+-.++..
T Consensus 32 g~dl~~v~~ll~kh~~le~~i~~ 54 (216)
T 1u5p_A 32 GKDLASVNNLLKKHQLLEADISA 54 (216)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34678888899999877666543
No 35
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=68.27 E-value=59 Score=28.13 Aligned_cols=26 Identities=4% Similarity=0.169 Sum_probs=18.5
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhh
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDW 355 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDW 355 (456)
+-.+.+||..+ ..+..|.+.||-|+=
T Consensus 39 R~Y~~~dl~~l-~~I~~lr~~G~sL~e 64 (142)
T 3gp4_A 39 RKFGAEDLRWI-LFTRQMRRAGLSIEA 64 (142)
T ss_dssp BCBCHHHHHHH-HHHHHHHHTTCCHHH
T ss_pred eeeCHHHHHHH-HHHHHHHHcCCCHHH
Confidence 56788888865 455667899996543
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=68.17 E-value=44 Score=26.59 Aligned_cols=9 Identities=0% Similarity=0.320 Sum_probs=3.9
Q ss_pred hhhHHHHHH
Q 012816 356 LRNILNEIS 364 (456)
Q Consensus 356 LekKLeEV~ 364 (456)
|++|+.-+.
T Consensus 4 ikkKm~~lk 12 (81)
T 1ic2_A 4 IKKKMQMLK 12 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 37
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=67.83 E-value=59 Score=27.96 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=44.2
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 368 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 368 e~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
+-+-..++++.+|.+.-=.++.++..||++-+.+++...+..+.... +.++......|...+..++..++
T Consensus 13 KAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re-------~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 13 KAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKE-------FEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888877778888888888877777777776663222 33333334444444444554443
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=67.41 E-value=35 Score=36.67 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=7.2
Q ss_pred hhhhhHHHHHHHHH
Q 012816 354 DWLRNILNEISEAI 367 (456)
Q Consensus 354 DWLekKLeEV~Ear 367 (456)
+=|+.+|....+..
T Consensus 92 E~Lr~rq~q~~dNd 105 (562)
T 3ghg_A 92 EILRGDFSSANNRD 105 (562)
T ss_dssp HTTSSHHHHHHHHH
T ss_pred HHHHHHHHhhhccc
Confidence 44555555555444
No 39
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=67.35 E-value=49 Score=26.91 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 012816 356 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 435 (456)
Q Consensus 356 LekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~ 435 (456)
|+.+++.+.-.+ +.++.+.++....++..+.+.|.++.-=...|.++.-++.-+.+.---=++||.+..-|..-
T Consensus 5 Lr~qi~~l~~e~------~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 5 LRRQVDQLTNDK------ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556666555444 44555666666667777777776554444444455555555544433335555555555555
Q ss_pred HHHhh
Q 012816 436 IQATQ 440 (456)
Q Consensus 436 v~~~k 440 (456)
|.++|
T Consensus 79 l~fLk 83 (86)
T 3swk_A 79 IAFLK 83 (86)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55554
No 40
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=67.14 E-value=18 Score=32.60 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=11.0
Q ss_pred HHhhhhHHHHHHHhhhhh
Q 012816 426 ELESNRLEQIIQATQSKV 443 (456)
Q Consensus 426 E~ess~L~~~v~~~kSKV 443 (456)
+...++|.+++..+|..+
T Consensus 147 e~lr~~l~~~~e~lk~~l 164 (185)
T 3r2p_A 147 EEMRDRARAHVDALRTHL 164 (185)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455566666666666654
No 41
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=67.02 E-value=25 Score=35.87 Aligned_cols=37 Identities=16% Similarity=-0.015 Sum_probs=20.8
Q ss_pred hhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 410 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 410 d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
++++++.+++++|.+|+.+...++..+..+=..+=+.
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455566666666666666666665555444444333
No 42
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=66.87 E-value=81 Score=29.47 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHH--------HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHH--
Q 012816 352 DVDWLRNILNEIS--------EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKAR-- 421 (456)
Q Consensus 352 KVDWLekKLeEV~--------Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~R-- 421 (456)
.+.|.+..+.+.. |.-+|-..+..++.+-+ ..++...+.+......+.+..-++..|+.+.......
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE---~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~ 87 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELE---AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY 87 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 422 --LSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 422 --L~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
+..|+.+.+.|......++-+++...
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 43
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.66 E-value=55 Score=27.20 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=4.0
Q ss_pred HHHHHHhhhhH
Q 012816 422 LSDLELESNRL 432 (456)
Q Consensus 422 L~~LE~ess~L 432 (456)
+..+|.+...|
T Consensus 81 ~~~aE~ev~~L 91 (101)
T 3u1c_A 81 AAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 44
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=65.49 E-value=13 Score=38.98 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=60.7
Q ss_pred EEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCc
Q 012816 272 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQI 351 (456)
Q Consensus 272 v~VnGFqVl~Sqv~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agf 351 (456)
|+-+||+.+|..++....-.++-+==|-+|+.-+..|=++| =.=|+|-.+|.+.- .=-+.+|.++...|..|.
T Consensus 36 ~s~~~y~~~~~~~~~~~~~~~~~~pd~g~c~~~~~~fG~yC-PTtCglad~L~kye--~~V~~dl~~Le~~l~~is---- 108 (461)
T 3ghg_B 36 ISGGGYRARPAKAAATQKKVERKAPDAGGCLHADPDLGVLC-PTGCQLQEALLQQE--RPIRNSVDELNNNVEAVS---- 108 (461)
T ss_dssp ----------------------CCCCCCCCBCSSTTTCBCE-ECHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH----
T ss_pred CCCCCcCCCCCCCccccccccccCCCCCCccccCcccCCcC-CCcchHHHHHHhcc--cchhhHHHHHHHHHHHHH----
Confidence 55689999999988877777766655888998888886654 23466666665432 112233333333333322
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhHHHHHHHHHHHHHhh
Q 012816 352 DVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG--LKESVAKTKARLSDLELES 429 (456)
Q Consensus 352 KVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d--~~~rv~e~k~RL~~LE~es 429 (456)
..=.++.+.+..++ ..-.+.+......+.+.++-.+||++.-.-++++.+ .-..|..+..-|..+..+.
T Consensus 109 ------n~Ts~a~~~v~~ik---~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i 179 (461)
T 3ghg_B 109 ------QTSSSSFQYMYLLK---DLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKI 179 (461)
T ss_dssp ------HHHHHHHTHHHHHH---HHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hhhHHHHHHHHHHH---HHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Confidence 22222223333222 111111111111133444555555565555665544 3445555555555555555
Q ss_pred hhHHHHHHHhh
Q 012816 430 NRLEQIIQATQ 440 (456)
Q Consensus 430 s~L~~~v~~~k 440 (456)
.+|++.|..+.
T Consensus 180 ~~l~~~~~~~~ 190 (461)
T 3ghg_B 180 QKLESDVSAQM 190 (461)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 55555554443
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.08 E-value=50 Score=33.04 Aligned_cols=37 Identities=3% Similarity=0.039 Sum_probs=20.8
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 012816 407 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 443 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV 443 (456)
.++..++++..++++=.+++.+..++...+..++-++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 3333444666666666666666666666665555544
No 46
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=64.85 E-value=84 Score=28.64 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=41.4
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 012816 374 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 436 (456)
Q Consensus 374 ~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v 436 (456)
..+..+....+..+..++.+|+++-+.+.....|+.-++-+...+.++|..|+.+...|=++.
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455566666666666666666677777777777777888888888777775544
No 47
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=64.34 E-value=28 Score=30.49 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 012816 421 RLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 455 (456)
Q Consensus 421 RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~l 455 (456)
.|.++|.+...-.+.+..+..|| |.+++|+|.|
T Consensus 80 ~lqe~ese~~~kkK~le~~~~kV--~mNk~LAe~F 112 (115)
T 3vem_A 80 KFHEVEAEHNTRTTKIEKDKNLV--IMNKLLANAF 112 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 47778888888888888888888 5567777765
No 48
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=62.78 E-value=72 Score=33.48 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=20.4
Q ss_pred HHh-HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 412 KES-VAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 412 ~~r-v~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.++ +.+++++|.+|+.+...++..+..+=..+-+.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 144 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNI 144 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444 56666666666666666666555554444443
No 49
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=62.06 E-value=48 Score=27.72 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=13.3
Q ss_pred HHHhcchhhhccHHHHHHHHHHHhHHH
Q 012816 321 QELQSTSLMQMTKAKVKEMMAVLKDVE 347 (456)
Q Consensus 321 etL~kspl~eLS~~dL~ea~~~L~dL~ 347 (456)
.+|+... ..||.+++..+-..=.-|+
T Consensus 9 reLN~~L-~gls~eev~~lKq~RRtlK 34 (90)
T 2wt7_B 9 RELNRHL-RGFTKDEVIRLKQKRRTLK 34 (90)
T ss_dssp HHHHTTC-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHhhh
Confidence 4455544 5666666655444433333
No 50
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=61.90 E-value=16 Score=36.52 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 012816 414 SVAKTKARLSDLELESNRLEQIIQATQSK 442 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v~~~kSK 442 (456)
+|..+++.|..++....+|.+.|..+..+
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 51
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=61.88 E-value=57 Score=25.70 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=3.1
Q ss_pred hhhhhH
Q 012816 354 DWLRNI 359 (456)
Q Consensus 354 DWLekK 359 (456)
+||..+
T Consensus 16 ~WL~e~ 21 (118)
T 3uul_A 16 TWLLSA 21 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 52
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=61.52 E-value=89 Score=27.82 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=23.5
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 404 KEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 404 Kekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
.+.+.....+|......++.+|+.+...+..++.++...-++
T Consensus 85 ~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eek 126 (147)
T 2b9c_A 85 IESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEE 126 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 333333445566666666666666666666666555544333
No 53
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=60.55 E-value=21 Score=26.27 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=26.1
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 012816 403 LKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 437 (456)
Q Consensus 403 qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~ 437 (456)
..|..+++...+..+..+|++-|+.|..-|-|++.
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 34455555566888999999999998888877653
No 54
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=59.71 E-value=52 Score=33.51 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=25.2
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 411 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
+++++.+++++|.+|+.+...++..+..+-..+=+.
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 108 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNL 108 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456777778888888888877777776655555444
No 55
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=59.65 E-value=23 Score=29.70 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=34.6
Q ss_pred hHHHHHHHhhcccccccCcc---cchhHH---HHHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNL---ESNSMR---AYYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l---Ks~~lR---s~ymn~Ll~LIetL~ks 326 (456)
..+..++|+.||++-.-|.- .|+.++ ..+|..|..+|..|...
T Consensus 28 ~~~y~rlf~~~P~~~~~F~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~ 76 (147)
T 1jf3_A 28 KECLSKFISAHPEMAAVFGFSGASDPGVAELGAKVLAQIGVAVSHLGDE 76 (147)
T ss_dssp HHHHHHHHHHCGGGTTTTTCSSTTCHHHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHhChhHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 56889999999999887764 456777 58999999998877644
No 56
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=59.58 E-value=33 Score=28.14 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=9.8
Q ss_pred HHHHhhhhhhhHHHHHHh
Q 012816 365 EAIEFSTQHQTIDAAKAN 382 (456)
Q Consensus 365 Eare~~~~~~~~e~eKe~ 382 (456)
|..+++.-.-++...|+-
T Consensus 17 EN~eLl~TKNaLnvvk~D 34 (77)
T 2w83_C 17 ENTQLLETKNALNIVKND 34 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555666643
No 57
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} SCOP: a.1.1.0 PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A* 3pt7_A* 3pi2_A*
Probab=59.17 E-value=25 Score=29.78 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=32.0
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ymn~Ll~LIetL~k 325 (456)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|..
T Consensus 28 ~~~y~rlF~~~P~~k~~F~~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 83 (152)
T 3pt8_A 28 QGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDHLDD 83 (152)
T ss_dssp HHHHHHHHHHCGGGGGGGHHHHTTSCHHHHTTCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhCchHHHHhHHHHcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999888875 6777765 567777777776654
No 58
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=59.03 E-value=72 Score=27.65 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHHHhc
Q 012816 335 KVKEMMAVLKDVESA 349 (456)
Q Consensus 335 dL~ea~~~L~dL~~a 349 (456)
+|..+...-.+|++.
T Consensus 21 qL~k~~~~r~~Le~~ 35 (112)
T 1x79_B 21 QLEKTMKDKQELEDF 35 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666654
No 59
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=58.27 E-value=66 Score=25.30 Aligned_cols=15 Identities=0% Similarity=0.288 Sum_probs=11.0
Q ss_pred HHHHhHHHhcCcchh
Q 012816 340 MAVLKDVESAQIDVD 354 (456)
Q Consensus 340 ~~~L~dL~~agfKVD 354 (456)
...+..|+.+||-|+
T Consensus 6 L~~I~~lr~lGfsL~ 20 (99)
T 1q08_A 6 LKFIRHARQLGFSLE 20 (99)
T ss_dssp HHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHCCCCHH
Confidence 456778888999654
No 60
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=57.82 E-value=1.1e+02 Score=27.86 Aligned_cols=15 Identities=7% Similarity=-0.038 Sum_probs=8.1
Q ss_pred eccchHHHHHHHhhc
Q 012816 280 RASISSILQSIISRY 294 (456)
Q Consensus 280 l~Sqv~iV~~IFeKH 294 (456)
.+|+.+-|+..|.-|
T Consensus 22 ~~s~~e~v~~~~~~y 36 (191)
T 1nfn_A 22 SGQRWELALGRFWDY 36 (191)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH
Confidence 455666666665544
No 61
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=57.76 E-value=25 Score=29.63 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=33.3
Q ss_pred hHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l----------Ks~~lRs---~ymn~Ll~LIetL~ks 326 (456)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~ 82 (147)
T 1mba_A 27 LDFLVALFEKFPDSANFFADFKGKSVADIKASPKLRDVSSRIFTRLNEFVNNAANA 82 (147)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCCHHHHHTCTTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCchHHHhhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 46889999999999988853 4556666 5788888888887644
No 62
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=57.65 E-value=67 Score=25.16 Aligned_cols=6 Identities=33% Similarity=0.922 Sum_probs=3.4
Q ss_pred hhhhhH
Q 012816 354 DWLRNI 359 (456)
Q Consensus 354 DWLekK 359 (456)
+||..+
T Consensus 16 ~WL~~~ 21 (119)
T 3uun_A 16 SWLLSA 21 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 63
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=57.43 E-value=54 Score=31.65 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 012816 320 VQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMN 399 (456)
Q Consensus 320 IetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~ 399 (456)
+++|...- .-+.++--..+...+..|. .=|++...++.+... ..+++-+....-..+.++..|+..++
T Consensus 134 leeLr~~l-~P~ae~~~~kl~~~~e~L~------~ql~~~a~~L~~~l~-----~~~eeLr~~L~p~ae~lr~~l~~~~e 201 (273)
T 3s84_A 134 VEELRRSL-APYAQDTQEKLNHQLEGLT------FQMKKNAEELKARIS-----ASAEELRQRLAPLAEDVRGNLRGNTE 201 (273)
T ss_dssp HHHHHHHH-GGGCSSCHHHHHHHHHHHH------HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTSSSCHH
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhh-hHHhHHHHHHHHHHHH-HhhhhHHHHHHHhhhhhhhccc
Q 012816 400 ELALKEKEVAG-LKESVAKTKARLSDLE-LESNRLEQIIQATQSKVTKFSQ 448 (456)
Q Consensus 400 eL~qKekev~d-~~~rv~e~k~RL~~LE-~ess~L~~~v~~~kSKV~kf~~ 448 (456)
+|..+..+... ++.++++.+.+|.-+= +....|.+.+..++-||.-|.+
T Consensus 202 ~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l~~~~~ 252 (273)
T 3s84_A 202 GLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAG 252 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhCcchh
No 64
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=57.18 E-value=81 Score=25.97 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHH
Q 012816 414 SVAKTKARLSDLELESNRLEQII 436 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v 436 (456)
++.+...++..+|.+..-|..+|
T Consensus 73 kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 73 KLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443
No 65
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.79 E-value=65 Score=33.28 Aligned_cols=6 Identities=17% Similarity=-0.019 Sum_probs=2.6
Q ss_pred cccccc
Q 012816 294 YGDIAA 299 (456)
Q Consensus 294 HpDIAs 299 (456)
.+|+..
T Consensus 41 DeDwG~ 46 (390)
T 1deq_A 41 DEDWNT 46 (390)
T ss_pred hhhccC
Confidence 344444
No 66
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=56.76 E-value=44 Score=34.60 Aligned_cols=57 Identities=7% Similarity=0.092 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 388 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 388 e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
+..-+.-.+||+|..+.+.-+......|.++++-|.........|.+.|..+..++.
T Consensus 80 ~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 80 DAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444455666666666655555556666666555555555555555555555554
No 67
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=56.62 E-value=21 Score=30.44 Aligned_cols=42 Identities=7% Similarity=0.199 Sum_probs=32.6
Q ss_pred hHHHHHHHhhcccccccCcc---------cchhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL---------ESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l---------Ks~~lRs---~ymn~Ll~LIetL~k 325 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~f~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 88 (146)
T 1it2_A 35 LNILLRFLKCFPQAQASFPKFSTKKSNLEQDPEVKHQAVVIFNKVNEIINSMDN 88 (146)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCCSCGGGCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCHHHHHHccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 57899999999999998864 7888876 566777777766654
No 68
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=56.18 E-value=96 Score=26.55 Aligned_cols=41 Identities=12% Similarity=0.243 Sum_probs=25.9
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 405 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 405 ekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
+..+.++.+|+.+..++...|...-.+|...+..++..++-
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666667777776666777777666666554
No 69
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=56.03 E-value=23 Score=30.07 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=32.4
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ymn~Ll~LIetL~k 325 (456)
..+..++|+.||++-.-|.- .|+.++. .+|..|..+|..|..
T Consensus 28 ~~~y~~lF~~~P~~k~~F~~~f~~~~~~~l~~n~~~~~h~~~v~~~l~~~v~~ldd 83 (152)
T 3pt8_B 28 TNFYMDLFKAYPDTLTPFKSLFQNVSFNQMTNHPTMKAQSLVFCNGMSSFVDNLDD 83 (152)
T ss_dssp HHHHHHHHHHCGGGGGGGTTTTTTCCHHHHTTCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHChhHHHHhhHHHcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999988874 6777776 577777777776643
No 70
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=55.61 E-value=79 Score=25.88 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 382 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 382 ~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
..++++.+.......+|..|.+-+.+..+=+.++.+|=.| |+.+...+.+.|..++-|-...
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~---l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTR---LDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666777788888888888877777776554 5566677777888888776543
No 71
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=55.61 E-value=71 Score=29.65 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhH----------HHHHHHH----HHHHHhhhhHHHHHH
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESV----------AKTKARL----SDLELESNRLEQIIQ 437 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv----------~e~k~RL----~~LE~ess~L~~~v~ 437 (456)
++..++.++++++++.+.+.+...-..+. ..+..|| .+.|.++..|.+.+.
T Consensus 88 Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~ 152 (192)
T 2p22_C 88 LHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTR 152 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555666666666666655553321111 2234444 455666777655443
No 72
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.44 E-value=1.2e+02 Score=27.49 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=12.0
Q ss_pred HHHHHhhhhHHHHHHHhhhhhhh
Q 012816 423 SDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 423 ~~LE~ess~L~~~v~~~kSKV~k 445 (456)
..+|.....|...+.+....++-
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 73
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.43 E-value=65 Score=27.52 Aligned_cols=14 Identities=14% Similarity=0.563 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHH
Q 012816 354 DWLRNILNEISEAI 367 (456)
Q Consensus 354 DWLekKLeEV~Ear 367 (456)
.|-+.|++++....
T Consensus 11 ~~y~~K~eel~~~~ 24 (129)
T 3tnu_B 11 SWYQTKYEELQQTA 24 (129)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 47777777776444
No 74
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.19 E-value=88 Score=25.78 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=5.3
Q ss_pred hhhHHHHHHHHH
Q 012816 356 LRNILNEISEAI 367 (456)
Q Consensus 356 LekKLeEV~Ear 367 (456)
|+.|+....+.+
T Consensus 11 LE~KIq~avdtI 22 (81)
T 2jee_A 11 LEAKVQQAIDTI 22 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 75
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=54.48 E-value=27 Score=29.38 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=32.0
Q ss_pred hHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~------lKs~~lRs---~ymn~Ll~LIetL~ks 326 (456)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|...
T Consensus 29 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ld~~ 80 (140)
T 2zs0_A 29 RDLFSELFNIQGSSRALFSGVGVDDMNSAAFTAHCLRVTGALNRLISQLDQQ 80 (140)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHCHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3688999999999987774 34677775 5667777777777544
No 76
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=54.15 E-value=6.4 Score=39.35 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 397 QMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 397 ~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
||+||.+.|..|....++|..+++.|..++.+...|++.|..+..++..
T Consensus 2 ~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp --------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666777777777777777777777777777777776666666666543
No 77
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=53.81 E-value=1.3e+02 Score=30.69 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 012816 334 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 334 ~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ear 367 (456)
.+|.++...+..|. .-|+|+=|+.+++|+....
T Consensus 9 ~~~~~~~~~~~~~~-~~~~l~~~~~r~~el~~~~ 41 (365)
T 1gqe_A 9 NRIQDLTERSDVLR-GYLDYDAKKERLEEVNAEL 41 (365)
T ss_dssp HHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHh
Confidence 34444445555444 3477777888888886543
No 78
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=53.75 E-value=1.1e+02 Score=26.29 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~k 440 (456)
+...+.+|+.++.+|.....+..+ +..++...-..|+.+...|.+-|.++-
T Consensus 74 L~~~k~eLe~~l~el~~rleeeee---~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLEDEEE---MNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666554444444 444444444445555555555555443
No 79
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=53.25 E-value=19 Score=30.93 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=33.6
Q ss_pred hHHHHHHHhhcccccccCcc--------cchhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL--------ESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l--------Ks~~lRs---~ymn~Ll~LIetL~k 325 (456)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|..
T Consensus 37 ~~~y~rlF~~~P~~k~~F~~f~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd 89 (152)
T 4hrt_B 37 LMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDD 89 (152)
T ss_dssp HHHHHHHHHHCTHHHHHTGGGCCCC---CCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHhHHHhhHHhCCCCccccCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 56889999999999776664 7888777 488888888887754
No 80
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.33 E-value=23 Score=26.07 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=18.4
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 012816 402 ALKEKEVAGLKESVAKTKARLSDLELES 429 (456)
Q Consensus 402 ~qKekev~d~~~rv~e~k~RL~~LE~es 429 (456)
.....|++..+++|.+.+.||.+||.-.
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555556677777788888777654
No 81
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.32 E-value=70 Score=26.36 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhhhh
Q 012816 418 TKARLSDLELESNR 431 (456)
Q Consensus 418 ~k~RL~~LE~ess~ 431 (456)
......+|..+...
T Consensus 53 L~~en~qLk~E~~~ 66 (81)
T 2jee_A 53 LERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444333
No 82
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=51.37 E-value=7 Score=31.30 Aligned_cols=32 Identities=6% Similarity=0.173 Sum_probs=25.9
Q ss_pred ccceEEeccEEeeccchHHHHHHHhhcccccccCc
Q 012816 268 ISDSVSVGKYHVRASISSILQSIISRYGDIAANCN 302 (456)
Q Consensus 268 vsetv~VnGFqVl~Sqv~iV~~IFeKHpDIAsnf~ 302 (456)
..+.|.|+|+.|-|+.++ .++..||+++..+.
T Consensus 3 ADDmIiv~G~nv~P~eIE---~vl~~~p~v~~~~v 34 (109)
T 3lax_A 3 ADDMIILKGVNIFPIQIE---TILLQFKELGSDYL 34 (109)
T ss_dssp GGSCEEETTEEECHHHHH---HHHHTCTTEEEEEE
T ss_pred cCEEEEECCEEECHHHHH---HHHHhCCCcccceE
Confidence 345589999999999988 56889999976543
No 83
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=51.33 E-value=99 Score=30.07 Aligned_cols=43 Identities=16% Similarity=0.438 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 392 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
.||..+++.|..+++-|.+ ||+.||+..+.|+..|..++.+++
T Consensus 180 ~EID~KI~~L~~mR~~vl~----------RLA~lEqdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 180 RDIEVEVENLRQKKEKLLG----------KIANIEQNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444444555555555444 666666666666666666655544
No 84
>2wtg_A Globin-like protein; metal-binding, oxygen transport; HET: HEM; 1.50A {Caenorhabditis elegans} PDB: 2wth_A*
Probab=50.47 E-value=1.3e+02 Score=26.49 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=34.3
Q ss_pred hHHHHHHHhhcccccccCc----------ccchhHH---HHHHHHHHHHHHHHhcch
Q 012816 284 SSILQSIISRYGDIAANCN----------LESNSMR---AYYLECLCSVVQELQSTS 327 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~----------lKs~~lR---s~ymn~Ll~LIetL~ksp 327 (456)
..+..++|+.|||+..=|. .+|+.|+ ...|..|..+|..|....
T Consensus 32 ~~fy~~LF~~~Pe~r~lF~~~~~v~~~d~~~s~~f~~q~~rl~~aL~~~v~~lDd~~ 88 (159)
T 2wtg_A 32 NAFYRYFFTNFPDLRVYFKGAEKYTADDVKKSERFDKQGQRILLACHLLANVYTNEE 88 (159)
T ss_dssp HHHHHHHHHHCGGGGGGSTTCTTCCHHHHHTCHHHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHChhHHHHccCcccCCHHhhhcCHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 3578999999999999998 5677664 567777777888776554
No 85
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=50.46 E-value=93 Score=32.07 Aligned_cols=24 Identities=4% Similarity=0.212 Sum_probs=10.6
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhh
Q 012816 407 EVAGLKESVAKTKARLSDLELESN 430 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~ess 430 (456)
+++++++++.++.+.|.+++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 77 KSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 86
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=50.33 E-value=73 Score=32.42 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=13.7
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhhh
Q 012816 405 EKEVAGLKESVAKTKARLSDLELESNR 431 (456)
Q Consensus 405 ekev~d~~~rv~e~k~RL~~LE~ess~ 431 (456)
..+++++++++.++.+.|.+++.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 70 IARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555554443
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.30 E-value=99 Score=30.85 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=2.6
Q ss_pred hhhhHHH
Q 012816 355 WLRNILN 361 (456)
Q Consensus 355 WLekKLe 361 (456)
|-++.|+
T Consensus 367 ~~~~~le 373 (487)
T 3oja_A 367 QKKKALD 373 (487)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 88
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} SCOP: a.1.1.2
Probab=49.90 E-value=23 Score=30.16 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=34.7
Q ss_pred chHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 012816 283 ISSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 283 qv~iV~~IFeKHpDIAsnf~l----------Ks~~lRs---~ymn~Ll~LIetL~k 325 (456)
-..+..++|+.||++-.-|.- .|+.++. .+|+.|..+|..|..
T Consensus 36 g~~~y~rlf~~~P~~~~~F~~~~d~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 91 (159)
T 1hlm_A 36 VADVFIRIFHNDPTAQRKFPQMAGLSPAELRTSRQMHAHAIRVSALMTTYIDEMDT 91 (159)
T ss_dssp HHHHHHHHTTTCSTTTTSSTTTTTSCSTTCSCCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHCHHHHHhcccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 357889999999999988865 5677876 788888888887765
No 89
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.57 E-value=1.4e+02 Score=31.32 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=10.2
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhh
Q 012816 407 EVAGLKESVAKTKARLSDLELES 429 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~es 429 (456)
+++++++++.++.+.|.+++.+.
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 90
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=49.36 E-value=50 Score=28.03 Aligned_cols=64 Identities=8% Similarity=0.116 Sum_probs=42.7
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhc--Ccc
Q 012816 284 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESA--QID 352 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l------Ks~~lRs---~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~a--gfK 352 (456)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.... .|..+...|...=.. |++
T Consensus 34 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd~~-------~l~~~l~~L~~~H~~~~~V~ 106 (148)
T 1yhu_C 34 EEVFAALFKMVPAAKNLFTRVNVADINSPEFQGHVVRVMGGLDILINALDDIP-------TLESMLDHLAGQHAVRDGVT 106 (148)
T ss_dssp HHHHHHHHHHCGGGGGGSGGGTGGGTTSHHHHHHHHHHHHHHHHHHHGGGCHH-------HHHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHChhHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHccccCCC
Confidence 57899999999999888764 3666654 67778888887775543 455555555544332 444
Q ss_pred hh
Q 012816 353 VD 354 (456)
Q Consensus 353 VD 354 (456)
-+
T Consensus 107 p~ 108 (148)
T 1yhu_C 107 GA 108 (148)
T ss_dssp TT
T ss_pred HH
Confidence 33
No 91
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=48.77 E-value=83 Score=24.32 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=9.4
Q ss_pred HhhhHHhHHHHHHHHHHHHHh
Q 012816 408 VAGLKESVAKTKARLSDLELE 428 (456)
Q Consensus 408 v~d~~~rv~e~k~RL~~LE~e 428 (456)
+...+..|.+++-.+..|+.+
T Consensus 51 l~~~k~Ei~elrr~iq~L~~e 71 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTME 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 92
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=48.53 E-value=37 Score=28.82 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=33.5
Q ss_pred hHHHHHHHhhcccccccCcc--------cchhHHH---HHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNL--------ESNSMRA---YYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l--------Ks~~lRs---~ymn~Ll~LIetL~ks 326 (456)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~~~d~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~ 88 (150)
T 1sct_A 35 LMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDDP 88 (150)
T ss_dssp HHHHHHHHHHCGGGGGGGCTTCCGGGGGGSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHChhHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 57889999999999888863 5666664 6888888888877653
No 93
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=48.23 E-value=40 Score=28.60 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=32.9
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ymn~Ll~LIetL~ks 326 (456)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ldd~ 91 (149)
T 2lhb_A 35 VDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDT 91 (149)
T ss_dssp HHHHHHHHHHCGGGGGGCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHCHhHHHHhhhhcCCCCHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 47889999999999888852 4677764 5778888888777543
No 94
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=47.85 E-value=1.1e+02 Score=25.45 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 012816 399 NELALKEKEVAGLKESVAKTKARLSDLEL 427 (456)
Q Consensus 399 ~eL~qKekev~d~~~rv~e~k~RL~~LE~ 427 (456)
.+|..-.+++.+..+.|...+.+|.+|+.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45555555555555555556666666553
No 95
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=47.51 E-value=72 Score=25.85 Aligned_cols=43 Identities=16% Similarity=0.441 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 392 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 392 kELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
+||.-+++.|....+-+-+ ||+.||+.-+.|+..+..+..+++
T Consensus 24 ~EID~Ki~nL~~mR~ivld----------RlA~lEqdE~~LE~~l~~i~~rle 66 (72)
T 2xu6_A 24 RDIEVEVENLRQKKEKLLG----------KIANIEQNQLMLEDNLKQIDDRLD 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5566666677777766666 888899888889888888877765
No 96
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=47.16 E-value=41 Score=28.50 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=38.9
Q ss_pred hHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 012816 284 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 347 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~------lKs~~lRs---~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~ 347 (456)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|.... .|..+...|...=
T Consensus 33 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~-------~l~~~l~~L~~~H 98 (147)
T 2zs0_C 33 QAVFASLFSRDAAAQGLFSGVSADNPDSADFRAHCVRVVNGLDVAINMLNDPA-------VLNEQLAHLSAQH 98 (147)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHhccccCccCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHh
Confidence 5689999999999988774 33677776 46777777777775432 3455555554443
No 97
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=46.65 E-value=42 Score=28.31 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=32.4
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHH---HHHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNL------ESNSMR---AYYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l------Ks~~lR---s~ymn~Ll~LIetL~ks 326 (456)
..+..++|+.||++-.-|.- .|+.|+ ...|+.|..+|..|...
T Consensus 31 ~~~y~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ldd~ 82 (145)
T 1x9f_B 31 QAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQP 82 (145)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhChHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 56889999999999887763 355565 46788888888877543
No 98
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.28 E-value=1.7e+02 Score=26.52 Aligned_cols=34 Identities=6% Similarity=0.050 Sum_probs=17.2
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 413 ESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 413 ~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.|+..++.+|.+.+.-...+..-+..||.=|.+.
T Consensus 115 ~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 115 ILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555555544443
No 99
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=45.62 E-value=51 Score=27.96 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=30.8
Q ss_pred hHHHHHHHhhcccccccCccc---------chhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCNLE---------SNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~lK---------s~~lRs---~ymn~Ll~LIetL~ 324 (456)
..++.++|+.||++-.-|... |+.++. ..|..|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~l~ 77 (153)
T 2bk9_A 25 AAILTQFFNRFPSNLEKFPFRDVPLEELSGNARFRAHAGRIIRVFDESIQVLG 77 (153)
T ss_dssp HHHHHHHHHHCGGGGGGSTTTTSCGGGGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhChhHHhcCcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcc
Confidence 467999999999999888743 556664 56777777777763
No 100
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=45.36 E-value=52 Score=27.94 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=33.0
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHH---HHHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNL------ESNSMR---AYYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l------Ks~~lR---s~ymn~Ll~LIetL~ks 326 (456)
..+..++|+.||++-.-|.- .|+.++ ...|..|..+|..|...
T Consensus 33 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~ 84 (149)
T 1yhu_D 33 QAVFKDLFANVPDAVGLFGAVKGDEVNSNEFKAHCIRVVNGLDSSIGLLSDP 84 (149)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTSSSTTSHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 56899999999999887753 366677 46678888888877654
No 101
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=44.89 E-value=1.5e+02 Score=25.51 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=14.4
Q ss_pred ccchHHHHHHHhhcccccccCc
Q 012816 281 ASISSILQSIISRYGDIAANCN 302 (456)
Q Consensus 281 ~Sqv~iV~~IFeKHpDIAsnf~ 302 (456)
+.-+..|+.++.+|-.+-.++.
T Consensus 29 g~dl~~v~~ll~kh~~~~~ei~ 50 (213)
T 1cun_A 29 GRDLTGVQNLRKKHKRLEAELA 50 (213)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888877654433
No 102
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=44.64 E-value=46 Score=30.85 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 417 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 417 e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
++++++-++..+..++.++..-=+....+|...+|+-+||
T Consensus 57 ~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LL 96 (197)
T 1dkg_A 57 RERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELL 96 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888887765
No 103
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.61 E-value=1.5e+02 Score=30.74 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012816 387 LESTKKELESQMNELALKEKEV 408 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev 408 (456)
|..++.-|+.++.++.++|..|
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555
No 104
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.55 E-value=2.1e+02 Score=29.40 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=5.4
Q ss_pred HHHHHHHHHhHHH
Q 012816 335 KVKEMMAVLKDVE 347 (456)
Q Consensus 335 dL~ea~~~L~dL~ 347 (456)
+|.++...|.+|.
T Consensus 39 ~l~~LE~~l~els 51 (409)
T 1m1j_C 39 ELLEIEGLLQQAT 51 (409)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 105
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=44.40 E-value=44 Score=27.96 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=33.3
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l------Ks~~lRs---~ymn~Ll~LIetL~ks 326 (456)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|...
T Consensus 31 ~~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ldd~ 82 (144)
T 1yhu_B 31 HFIWSHVFQHSPAARDMFKRVRGDNIHTPAFRAHATRVLGGLDMCIALLDDE 82 (144)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTCSSSHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHChHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 57889999999998887764 3566665 6888888888887653
No 106
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=44.34 E-value=1.7e+02 Score=29.77 Aligned_cols=46 Identities=15% Similarity=-0.016 Sum_probs=24.7
Q ss_pred EEeccEEeeccchHHHHHHHhhccccc---ccCcccchhHHHHHHHHHHHHH
Q 012816 272 VSVGKYHVRASISSILQSIISRYGDIA---ANCNLESNSMRAYYLECLCSVV 320 (456)
Q Consensus 272 v~VnGFqVl~Sqv~iV~~IFeKHpDIA---snf~lKs~~lRs~ymn~Ll~LI 320 (456)
+.|||=.|.. ..++.++....+|. .++.+-++..|..||+.+++..
T Consensus 129 ~~ing~~v~~---~~l~~~~~~li~i~~q~~~~~l~~~~~rr~~LD~~~~~~ 177 (517)
T 4ad8_A 129 ARLSGEVVSV---RELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKE 177 (517)
T ss_dssp EESSSSBCCH---HHHHHHHTTTEEEESGGGGGTTTSHHHHHHHHHTSSHHH
T ss_pred EEECCEECCH---HHHHHHhhhheEEeCCchHHhcCCHHHHHHHHHHHhCcc
Confidence 6777765542 23444444433331 1233347777777777666544
No 107
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=44.13 E-value=81 Score=27.36 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhh
Q 012816 384 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNR 431 (456)
Q Consensus 384 dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~ 431 (456)
|..|+.++.|++..-.+|.....| .+..|..+++|+.+||.+...
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E---~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTE---SQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555555444333 344677777777777755544
No 108
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=43.52 E-value=75 Score=27.03 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=17.8
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
+-.+.+||..+. .+..|++.||-|+
T Consensus 37 R~Y~~~dl~~l~-~I~~lr~~G~sl~ 61 (135)
T 1q06_A 37 RTYTQQHLNELT-LLRQARQVGFNLE 61 (135)
T ss_dssp EECCHHHHHHHH-HHHHHHHTTCCHH
T ss_pred eeeCHHHHHHHH-HHHHHHHCCCCHH
Confidence 457888887654 4556788999765
No 109
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=43.52 E-value=1.5e+02 Score=25.08 Aligned_cols=47 Identities=32% Similarity=0.388 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L 432 (456)
.|+.++++|+....||......+.-...--..|..+|..++.+...|
T Consensus 55 ~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 55 VLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555554443333333333344555555555554443
No 110
>1gdj_A Leghemoglobin (deoxy); oxygen transport; HET: HEM; 1.70A {Lupinus luteus} SCOP: a.1.1.2 PDB: 1gdi_A* 1gdk_A* 1gdl_A* 1lh1_A* 1lh2_A* 1lh3_A* 1lh5_A* 1lh6_A* 1lh7_A* 2gdm_A* 2lh1_A* 2lh2_A* 2lh3_A* 2lh5_A* 2lh6_A* 2lh7_A*
Probab=43.24 E-value=1.4e+02 Score=24.79 Aligned_cols=68 Identities=6% Similarity=0.062 Sum_probs=43.5
Q ss_pred hHHHHHHHhhcccccccCcc---------cchhHHH---HHHHHHHHHHHHHhcchhhhc--cHHHHHHHHHHHhHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL---------ESNSMRA---YYLECLCSVVQELQSTSLMQM--TKAKVKEMMAVLKDVESA 349 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l---------Ks~~lRs---~ymn~Ll~LIetL~kspl~eL--S~~dL~ea~~~L~dL~~a 349 (456)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|....+..| .-.+|...+.. .
T Consensus 27 ~~fy~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~~~~l~~~l~~L~~~H~~------~ 100 (153)
T 1gdj_A 27 HRFFILVLEIAPAAKDLFSFLKGTSEVPQNNPELQAHAGKVFKLVYEAAIQLEVTGVVVTDATLKNLGSVHVS------K 100 (153)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHH------H
T ss_pred HHHHHHHHHHCHhHHHhhhhccCCchhhhhCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhh------c
Confidence 57889999999999987763 3677754 478888888888865331122 23445555544 2
Q ss_pred Ccchhhhh
Q 012816 350 QIDVDWLR 357 (456)
Q Consensus 350 gfKVDWLe 357 (456)
|++-++..
T Consensus 101 gV~p~~f~ 108 (153)
T 1gdj_A 101 GVADAHFP 108 (153)
T ss_dssp TCCGGGHH
T ss_pred CCCHHHHH
Confidence 55555544
No 111
>3lb2_A Dehaloperoxidase A; globin, oxidoreductase; HET: HEM; 1.06A {Amphitrite ornata} SCOP: a.1.1.2 PDB: 1ewa_A* 1ew6_A* 2qfk_A* 3kun_A* 3lb1_A* 3dr9_A* 3lb3_A* 3lb4_A* 3mou_A* 3ord_A* 3mym_A* 3k3u_A* 3o7n_A* 3kuo_A* 2qfn_A* 3myn_A* 3oj1_A* 3ok5_A* 3ixf_A*
Probab=43.12 E-value=25 Score=30.20 Aligned_cols=43 Identities=9% Similarity=0.172 Sum_probs=32.5
Q ss_pred hHHHHHHHhhcccccccCc-c---------cchhHHH---HHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCN-L---------ESNSMRA---YYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~-l---------Ks~~lRs---~ymn~Ll~LIetL~ks 326 (456)
..++.++|+.||++-.-|. + .|+.|+. ..|..|..+|..|...
T Consensus 18 ~~~l~rlF~~~P~tk~~F~~f~~~s~~~l~~n~~~~aHg~kV~~al~~~v~~ldd~ 73 (137)
T 3lb2_A 18 QDIFLAFLNKYPDERRYFKNYVGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDC 73 (137)
T ss_dssp HHHHHHHHHHSGGGGGGCTTTTTCCCC-CTTSHHHHHHHHHHHHHHHHHHHHCBTT
T ss_pred HHHHHHHHHHCHHHHHHhHHcCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 4688999999999988876 2 3577776 5677777777777554
No 112
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=43.01 E-value=85 Score=29.53 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 012816 377 DAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 434 (456)
Q Consensus 377 e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~ 434 (456)
++.-++.+.+|..+-.|..-.-.+|..+..|++.+++++...++....++...++-..
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e 69 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAE 69 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 3344555566666666666555666666677776666766666666665554444333
No 113
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=42.96 E-value=52 Score=27.61 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=31.5
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHH---HHHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNL------ESNSMR---AYYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l------Ks~~lR---s~ymn~Ll~LIetL~ks 326 (456)
..++.++|+.||++-.-|.- .|+.|+ ...|..|..+|..|...
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ldd~ 80 (142)
T 2zs0_B 29 NRIWEDLFANMPDARGLFSRVNGNDIDSSEFQAHSLRVLGGLDMCVASLDDV 80 (142)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhChHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 56899999999999887753 356555 45677777777777543
No 114
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=42.87 E-value=31 Score=29.29 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=31.4
Q ss_pred hHHHHHHHhhcccccccCcc--------cchhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL--------ESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l--------Ks~~lRs---~ymn~Ll~LIetL~k 325 (456)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 36 ~~~y~rlF~~~P~~k~~F~~f~~~~~~~~n~~~~~h~~~v~~al~~~v~~ld~ 88 (151)
T 1sct_B 36 LMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDD 88 (151)
T ss_dssp HHHHHHHHHHCHHHHHHTGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHhCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46889999999998887762 5666654 677777777776654
No 115
>2vyw_A Hemoglobin; trematode, oxygen binding; HET: HEM; 1.8A {Fasciola hepatica}
Probab=42.77 E-value=47 Score=28.43 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=32.3
Q ss_pred hHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l----------Ks~~lRs---~ymn~Ll~LIetL~ks 326 (456)
..++.++|..||++-.-|.- .|+.|+. ..|+.|..+|..|...
T Consensus 30 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~ 85 (148)
T 2vyw_A 30 VSIYKTLFAAHPEYISYFSKLQGLTKDNVGQSEGIRYYGRTLGEELIRLLKAASNP 85 (148)
T ss_dssp HHHHHHHHHHCGGGGGGSGGGTTCCTTTGGGCSHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 57899999999999887752 4555654 5788888888766543
No 116
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=42.64 E-value=46 Score=28.49 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=38.6
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 012816 284 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 347 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l------Ks~~lRs---~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~ 347 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.... .|..+...|...=
T Consensus 36 ~~~~~rlF~~~P~~k~~F~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~-------~l~~~l~~L~~~H 101 (151)
T 1x9f_A 36 RAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTL-------VLQSHLGHLADQH 101 (151)
T ss_dssp HHHHHHHHHHCGGGGGGGTTTTTTSTTSSHHHHHHHHHHHHHHHHHTTTTCHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHh
Confidence 47899999999999887753 3777765 56777777777665432 3555555555443
No 117
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=42.56 E-value=1.5e+02 Score=24.95 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=32.8
Q ss_pred hHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l----------Ks~~lRs---~ymn~Ll~LIetL~k 325 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 23 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 77 (147)
T 2nrl_A 23 GLVLTRLFKEHPETQKLFPKFAGIAQADIAGNAAVSAHGATVLKKLGELLKAKGS 77 (147)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTCCGGGTTTCHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHCHhHHHHhhhhcCCCHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57889999999999887753 6777765 577888888777654
No 118
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.51 E-value=1.4e+02 Score=38.45 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
+..+.+++++..+.|.+++.+++++.+++.+.++.+.++-.+-.+|+..+...+.|++
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555544444444444444444443
No 119
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A*
Probab=42.47 E-value=41 Score=28.77 Aligned_cols=42 Identities=7% Similarity=0.207 Sum_probs=30.8
Q ss_pred hHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l----------Ks~~lRs---~ymn~Ll~LIetL~k 325 (456)
..++.++|..||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 83 (147)
T 1h97_A 29 LGAYHALFTAHPQYISHFSRLEGHTIENVMQSEGIKHYARTLTEAIVHMLKEISN 83 (147)
T ss_dssp HHHHHHHHHHCGGGGGGSGGGTTCCTTTGGGSHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccCC
Confidence 57899999999999887762 3777765 466666666665543
No 120
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=42.02 E-value=1.2e+02 Score=25.18 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHhh
Q 012816 419 KARLSDLELESNRLEQIIQATQ 440 (456)
Q Consensus 419 k~RL~~LE~ess~L~~~v~~~k 440 (456)
...|.+||....++.+.|..|+
T Consensus 57 ~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 57 AKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444443
No 121
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=41.39 E-value=2.1e+02 Score=26.28 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=34.8
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHhHHHHHHHHHHHHHhhhhHHH----HHHHh
Q 012816 368 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL----KESVAKTKARLSDLELESNRLEQ----IIQAT 439 (456)
Q Consensus 368 e~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~----~~rv~e~k~RL~~LE~ess~L~~----~v~~~ 439 (456)
+++.-+..++.++.... .+.+...+|+..+..|....+.+++- ...-...-+||..||.+.+.++. -+..+
T Consensus 70 e~~~LQa~L~qEr~~r~-q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKal 148 (168)
T 3o0z_A 70 DYYQLQAILEAERRDRG-HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSL 148 (168)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44445555666654432 33333333333333333322222221 11223445677777776666652 24445
Q ss_pred hhhhhh
Q 012816 440 QSKVTK 445 (456)
Q Consensus 440 kSKV~k 445 (456)
+.+.++
T Consensus 149 Q~~~eq 154 (168)
T 3o0z_A 149 QQRLEQ 154 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 122
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=41.38 E-value=17 Score=31.13 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=33.6
Q ss_pred chHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 012816 283 ISSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 283 qv~iV~~IFeKHpDIAsnf~l----------Ks~~lRs---~ymn~Ll~LIetL~k 325 (456)
-..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 36 g~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld~ 91 (158)
T 1hlb_A 36 VTDVFIRIFAYDPSAQNKFPQMAGMSASQLRSSRQMQAHAIRVSSIMSEYVEELDS 91 (158)
T ss_dssp HHHHHHHHHHHCTHHHHTSGGGTTCCHHHHTTCHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHCHHHHHHhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCc
Confidence 357899999999999888865 6777776 677777777776654
No 123
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=41.16 E-value=80 Score=24.81 Aligned_cols=6 Identities=17% Similarity=0.208 Sum_probs=2.8
Q ss_pred cchhhh
Q 012816 449 KSLADE 454 (456)
Q Consensus 449 kSl~D~ 454 (456)
|++++.
T Consensus 82 C~i~~~ 87 (99)
T 1q08_A 82 CSILEA 87 (99)
T ss_dssp CHHHHH
T ss_pred CcchHH
Confidence 554443
No 124
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.92 E-value=1.8e+02 Score=25.14 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=6.4
Q ss_pred CcchhhhhhHHHH
Q 012816 350 QIDVDWLRNILNE 362 (456)
Q Consensus 350 gfKVDWLekKLeE 362 (456)
++.+|=++.|+..
T Consensus 16 ~~E~e~~k~K~~~ 28 (111)
T 2v66_B 16 KYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555543
No 125
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.52 E-value=3.2e+02 Score=28.63 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 012816 418 TKARLSDLE 426 (456)
Q Consensus 418 ~k~RL~~LE 426 (456)
++.+|.+||
T Consensus 180 l~~ki~~l~ 188 (464)
T 1m1j_B 180 LHKKIQKLE 188 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 126
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=40.31 E-value=1.6e+02 Score=24.45 Aligned_cols=44 Identities=2% Similarity=0.138 Sum_probs=29.1
Q ss_pred hHHHHHHHhhcccccccCcccchhH---HHHHHHHHHHHHHHHhcch
Q 012816 284 SSILQSIISRYGDIAANCNLESNSM---RAYYLECLCSVVQELQSTS 327 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~lKs~~l---Rs~ymn~Ll~LIetL~ksp 327 (456)
..+..++|+.||++..-|.--|+.+ ....+..|..+|..|....
T Consensus 26 ~~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~l~~~l~~~v~~ld~~~ 72 (146)
T 2vhb_A 26 TTFYKNLFAKHPEVRPLFDMGRQESLEQPKALAMTVLAAAQNIENLP 72 (146)
T ss_dssp HHHHHHHHHHCGGGGGGC--------CCCCCHHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHHChHHHHhcCcchhhhhHHHHHHHHHHHHHHHhccChH
Confidence 3577889999999999887644433 2467888888888776543
No 127
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.69 E-value=1.5e+02 Score=25.32 Aligned_cols=14 Identities=14% Similarity=0.584 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHH
Q 012816 354 DWLRNILNEISEAI 367 (456)
Q Consensus 354 DWLekKLeEV~Ear 367 (456)
.|-+.|++++....
T Consensus 13 ~~y~~K~eel~~~~ 26 (131)
T 3tnu_A 13 EWFFTKTEELNREV 26 (131)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 47777877776544
No 128
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=39.62 E-value=1.4e+02 Score=23.76 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 413 ESVAKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 413 ~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
.++..+..++..|+.....+...+..++.++.
T Consensus 72 ~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 72 EKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555443
No 129
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=39.56 E-value=57 Score=27.66 Aligned_cols=43 Identities=9% Similarity=0.295 Sum_probs=32.1
Q ss_pred hHHHHHHHhhcccccccCc-c-------cchhHHH---HHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCN-L-------ESNSMRA---YYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~-l-------Ks~~lRs---~ymn~Ll~LIetL~ks 326 (456)
..+..++|+.||++-.-|. + .|+.++. ..|..|..+|..|...
T Consensus 34 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~ 87 (146)
T 3g46_A 34 VALMTTLFADNQETIGYFKRLGDVSQGMANDKLRGHSITLMYALQNFIDQLDNP 87 (146)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHCHHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3688999999999987776 3 4666655 5778888888877443
No 130
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=39.51 E-value=1.9e+02 Score=25.20 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhH-Hh--HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 396 SQMNELALKEKEVAGLK-ES--VAKTKARLSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 396 e~l~eL~qKekev~d~~-~r--v~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
++...+.+++.+|...+ .+ -.++.+-+.+++.....|...|..-..+|+.|.
T Consensus 48 ~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE 102 (119)
T 3etw_A 48 QVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFE 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444421 11 257788888889899999999999999999994
No 131
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.26 E-value=30 Score=26.08 Aligned_cols=12 Identities=42% Similarity=0.412 Sum_probs=5.6
Q ss_pred HHhHHHHHHHHH
Q 012816 412 KESVAKTKARLS 423 (456)
Q Consensus 412 ~~rv~e~k~RL~ 423 (456)
.+++.+.+.||.
T Consensus 39 ~~~~~el~~~l~ 50 (53)
T 2yy0_A 39 VEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 334445555544
No 132
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.21 E-value=1.3e+02 Score=23.03 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=22.0
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 012816 403 LKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 437 (456)
Q Consensus 403 qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~ 437 (456)
..+.++.++..+-.+++.++..|+.+..-|.+.|.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555667777777777777777665543
No 133
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=38.77 E-value=39 Score=28.26 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=30.6
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ymn~Ll~LIetL~k 325 (456)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 26 ~~~~~rlF~~~P~~~~~F~~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 81 (142)
T 1b0b_A 26 PEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDN 81 (142)
T ss_dssp HHHHHHHHHHCHHHHHTTTTTTTTCCGGGCTTSHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhCchHHHHhHHhhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccCC
Confidence 46889999999999887765 3555664 567777777776654
No 134
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.62 E-value=1.2e+02 Score=22.37 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 012816 389 STKKELESQMNELALKEKEVAG 410 (456)
Q Consensus 389 ~~kkELEe~l~eL~qKekev~d 410 (456)
..+..+....++|.....+|..
T Consensus 30 ~~k~~~~~~~~~l~~~~~~I~~ 51 (60)
T 3htk_A 30 KAKEKINEIFEKLNTIRDEVIK 51 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 135
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=38.03 E-value=46 Score=23.81 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHH
Q 012816 414 SVAKTKARLSDLELESNRLEQII 436 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v 436 (456)
+|++...+...|+.+..+|...+
T Consensus 9 KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh
Confidence 45555555555555666554443
No 136
>1ith_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.50A {Urechis caupo} SCOP: a.1.1.2
Probab=37.93 E-value=38 Score=28.42 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=30.6
Q ss_pred hHHHHHHHhhcccccccCc----------ccchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCN----------LESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~----------lKs~~lRs---~ymn~Ll~LIetL~ 324 (456)
..++.++|+.||++-.=|. ..|+.++. ..|+.|..+|..|.
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 80 (141)
T 1ith_A 27 DSIFFKYLTAYPGDLAFFHKFSSVPLYGLRSNPAYKAQTLTVINYLDKVVDALG 80 (141)
T ss_dssp HHHHHHHHHHSGGGGGGCTTTTTSCGGGGGGCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChHHHHHhHhhcCCCHHHHhhCHHHHHHHHHHHHHHHHHHHHcc
Confidence 5688999999999988776 33676665 56677777776664
No 137
>1x3k_A Hemoglobin component V; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.64A {Tokunagayusurika akamusi} PDB: 2zwj_A* 3a5a_A* 3a5b_A* 3a5g_A* 3a9m_A* 3arj_A* 3ark_A* 3arl_A*
Probab=37.90 E-value=74 Score=27.20 Aligned_cols=42 Identities=5% Similarity=0.224 Sum_probs=29.8
Q ss_pred hHHHHHHHhhcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l----------Ks~~lRs---~ymn~Ll~LIetL~k 325 (456)
..++.++|+.||++-.-|.- .|+.++. ..|..|..+|..|..
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~~~~~~ah~~~v~~~l~~~v~~ldd 83 (152)
T 1x3k_A 29 NTVFYNYLKKYPSNQDKFETLKGHPLDEVKDTANFKLIAGRIFTIFDNCVKNVGN 83 (152)
T ss_dssp HHHHHHHHHHSGGGGGGSTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHChhHHHHhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 47889999999999988862 3666665 455555566666643
No 138
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=37.43 E-value=64 Score=27.44 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=31.5
Q ss_pred hHHHHHHHhhcccccccCc-c---------cchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCN-L---------ESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~-l---------Ks~~lRs---~ymn~Ll~LIetL~ 324 (456)
..++.++|+.||++-.-|. + .|+.+|. ..|..|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld 78 (151)
T 2c0k_A 25 VEMLKRYFKKYPHNLNHFPWFKEIPFDDLPENARFKTHGTRILRQVDEGVKALS 78 (151)
T ss_dssp HHHHHHHHHHCGGGGGGCHHHHTSCGGGGGGCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCHHHHHHHHHhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 5788999999999987775 1 4555554 57888888888876
No 139
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.01 E-value=1.7e+02 Score=23.72 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 012816 415 VAKTKARLSDLELESNRLEQIIQATQS 441 (456)
Q Consensus 415 v~e~k~RL~~LE~ess~L~~~v~~~kS 441 (456)
+.+..+|..+|...-..|+..|.++..
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 140
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=36.98 E-value=1.1e+02 Score=28.69 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=5.7
Q ss_pred hHHHHHHHhhhhh
Q 012816 431 RLEQIIQATQSKV 443 (456)
Q Consensus 431 ~L~~~v~~~kSKV 443 (456)
+|...+..++.|+
T Consensus 195 kl~~~~e~lr~~l 207 (243)
T 2a01_A 195 KATEHLSTLSEKA 207 (243)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444444
No 141
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.77 E-value=57 Score=33.05 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 012816 387 LESTKKELES 396 (456)
Q Consensus 387 ~e~~kkELEe 396 (456)
++.++.++++
T Consensus 26 ~~~~~~~~~~ 35 (403)
T 4etp_A 26 IKDTELGMKE 35 (403)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 142
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=36.44 E-value=3e+02 Score=26.57 Aligned_cols=43 Identities=5% Similarity=0.149 Sum_probs=34.0
Q ss_pred hHHHHHHHhhcccccccCcccchhH---HHHHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNLESNSM---RAYYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~lKs~~l---Rs~ymn~Ll~LIetL~ks 326 (456)
..+..++|+.||++-.-|.--++.+ ....++.|..+|.-|...
T Consensus 26 ~~fy~rlf~~~P~~~~~F~~~~~~~~~~~~~~~~~l~~~~~~ld~~ 71 (403)
T 1cqx_A 26 KCFYQRMFEAHPELKNVFNMAHQEQGQQQQALARAVYAYAENIEDP 71 (403)
T ss_dssp HHHHHHHHHHCGGGGGTSCCSCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhChHHHhhCcccchhhHHHHHHHHHHHHHHHHhccCH
Confidence 3677889999999999888765544 668888888888877644
No 143
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=36.44 E-value=73 Score=26.57 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=32.5
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l------Ks~~lRs---~ymn~Ll~LIetL~ks 326 (456)
..+..++|+.||++-.-|.- .|+.|+. ..|+.|..+|..|...
T Consensus 29 ~~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ld~~ 80 (140)
T 1x9f_D 29 LELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTP 80 (140)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhChhHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 46889999999999887753 3566665 5788888888877653
No 144
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=36.42 E-value=62 Score=27.45 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=31.1
Q ss_pred hHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~------lKs~~lRs---~ymn~Ll~LIetL~ks 326 (456)
..++.++|+.||++-.-|. ..|+.|+. ..|..|..+|..|...
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ldd~ 80 (145)
T 1yhu_A 29 DALWRNVFNYAPNARDIFESVNSKDMASPEFKAHIARVLGGLDRVISMLDNQ 80 (145)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHTTTTCH
T ss_pred HHHHHHHHHcCHHHHHhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 4788999999999877664 23566654 5677777777766543
No 145
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=36.26 E-value=2e+02 Score=24.72 Aligned_cols=25 Identities=4% Similarity=0.116 Sum_probs=18.1
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
+..+.+||..+.. +..|.+.||-|+
T Consensus 53 R~Y~~~dl~~l~~-I~~lr~~G~sL~ 77 (148)
T 3gpv_A 53 RIFNEEALKYLEM-ILCLKNTGMPIQ 77 (148)
T ss_dssp EEBCHHHHHHHHH-HHHHHTTTCCHH
T ss_pred eecCHHHHHHHHH-HHHHHHcCCCHH
Confidence 5678888886554 566688999654
No 146
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=36.18 E-value=2.6e+02 Score=25.67 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=21.0
Q ss_pred hhccHHHHHHHHHHH--hHHHhcCcchhhhhhHHHHHHHH
Q 012816 329 MQMTKAKVKEMMAVL--KDVESAQIDVDWLRNILNEISEA 366 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L--~dL~~agfKVDWLekKLeEV~Ea 366 (456)
..|-.++|..=++++ ..+..+.=-+++|+.+|.-+.+.
T Consensus 30 ~~l~~sel~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~~e 69 (216)
T 2lem_A 30 SQFESSSLGQQLNLNLLENWDTLGSTVSQLQERLGPLTRD 69 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCCCCSSHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 455555554433332 33455555568888888775433
No 147
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=36.16 E-value=1.4e+02 Score=22.92 Aligned_cols=33 Identities=18% Similarity=0.485 Sum_probs=24.8
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 012816 411 LKESVAKTKARLSDLELESNRLEQIIQATQSKV 443 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV 443 (456)
+|..+.+-..+|..||.+-++++..+.-+++|+
T Consensus 22 LrrEL~dNS~~lskLE~ets~mKevlk~lq~~i 54 (54)
T 1deb_A 22 LRQELEDNSNHLTKLETEASNMKEVLKQLQGSI 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHcccC
Confidence 444556667788888888888888888777764
No 148
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.11 E-value=1.7e+02 Score=23.62 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=17.3
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 413 ESVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 413 ~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
.|+..+..++..|+.....+.+.+..++.++..
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555544
No 149
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=35.99 E-value=85 Score=25.71 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=32.6
Q ss_pred hHHHHHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHhcch
Q 012816 284 SSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS 327 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~lKs~~lRs~ymn~Ll~LIetL~ksp 327 (456)
..+..++|+.||++-.-|.-....=....|..|..+|..|....
T Consensus 25 ~~fy~rlf~~~P~~k~~F~~d~~~h~~~l~~al~~~v~~ld~~~ 68 (131)
T 3ubc_A 25 LLFYANLFKEEPTVSVLFQNPISSQSRKLMQVLGILVQGIDNLE 68 (131)
T ss_dssp HHHHHHHHHHCGGGGGGCCSCHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHhChHHHHHccccHHHHHHHHHHHHHHHHHhCCChH
Confidence 35688999999999888876433445567888888888775544
No 150
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.85 E-value=60 Score=23.22 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKT 418 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~ 418 (456)
|..++.++|+.+.+....+.+|.-+++-+.++
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 44455555555555555555555544444443
No 151
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=35.76 E-value=45 Score=30.54 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHhhhhh
Q 012816 427 LESNRLEQIIQATQSKV 443 (456)
Q Consensus 427 ~ess~L~~~v~~~kSKV 443 (456)
...++|.+.+..++.++
T Consensus 165 elk~~l~~~veel~~~L 181 (191)
T 1nfn_A 165 GAREGAERGLSAIRERL 181 (191)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444444
No 152
>1x9f_C Erythrocruorin, globin III, extracellular, globin C; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_C*
Probab=35.72 E-value=58 Score=27.76 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=38.5
Q ss_pred hHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh
Q 012816 284 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 348 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~------lKs~~lRs---~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~ 348 (456)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|.... .|..+...|...=.
T Consensus 37 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~-------~l~~~l~~L~~~H~ 103 (153)
T 1x9f_C 37 RLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPP-------ALDAALDHLAHQHE 103 (153)
T ss_dssp HHHHHHHHHHSTTHHHHTGGGTGGGTTSHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHhhhhcCccCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhhc
Confidence 5789999999999887764 34666663 45777777777765433 35555555554443
No 153
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=35.59 E-value=74 Score=26.80 Aligned_cols=42 Identities=10% Similarity=0.164 Sum_probs=33.5
Q ss_pred hHHHHHHHhhcccccccCcc----c------chhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL----E------SNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l----K------s~~lRs---~ymn~Ll~LIetL~k 325 (456)
..+..++|+.||++-.-|.- . |+.++. ..|..|..+|..|..
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 81 (150)
T 1x46_A 27 VDILYNFFKSYPASQAKFSAFAGKDLESLKDTAPFALHATRIVSVINEAIALMGV 81 (150)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCHHHHHhhHhccCCCHHHHhhChHHHHHHHHHHHHHHHHHHHccC
Confidence 88999999999999988862 1 555654 678888888888866
No 154
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.57 E-value=1.8e+02 Score=23.80 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=3.4
Q ss_pred HHHHHHHHHHHHhh
Q 012816 416 AKTKARLSDLELES 429 (456)
Q Consensus 416 ~e~k~RL~~LE~es 429 (456)
+.++.|+.+||.+.
T Consensus 61 ~r~~~ri~elEeEl 74 (77)
T 2w83_C 61 LKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHC-------
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555443
No 155
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=35.54 E-value=2.4e+02 Score=25.19 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=7.2
Q ss_pred HHHHHHHHHhcch
Q 012816 315 CLCSVVQELQSTS 327 (456)
Q Consensus 315 ~Ll~LIetL~ksp 327 (456)
-|+.+++.|++++
T Consensus 26 elik~L~~le~sa 38 (152)
T 4fla_A 26 ELIKALQDLENAA 38 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccc
Confidence 3555555665555
No 156
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.41 E-value=48 Score=24.95 Aligned_cols=6 Identities=17% Similarity=0.202 Sum_probs=2.2
Q ss_pred HHHHHH
Q 012816 387 LESTKK 392 (456)
Q Consensus 387 ~e~~kk 392 (456)
++.+++
T Consensus 21 ~eaLk~ 26 (53)
T 2yy0_A 21 IELLRL 26 (53)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 157
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=35.30 E-value=1.7e+02 Score=23.42 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=28.1
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 012816 411 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 449 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~k 449 (456)
....+..=-..|.++.....+..-+|.....++.++..+
T Consensus 48 ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 48 MGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 345666667778888877777777888888888877643
No 158
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=34.66 E-value=80 Score=26.41 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=31.8
Q ss_pred hHHHHHHHhhcccccccCc-----ccchhHH---HHHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCN-----LESNSMR---AYYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~-----lKs~~lR---s~ymn~Ll~LIetL~k 325 (456)
..+..++|+.||++-.-|. ..|+.|+ ...|+.|..+|.-|..
T Consensus 27 ~~~y~rlF~~~P~~k~~F~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ld~ 76 (142)
T 1jeb_A 27 TETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHGSKVVAAVGDAVKSIDD 76 (142)
T ss_dssp HHHHHHHHHHCGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCccHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Confidence 3788999999999988776 3456676 4577888888776644
No 159
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=34.59 E-value=2e+02 Score=30.23 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=16.5
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhhhH
Q 012816 408 VAGLKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 408 v~d~~~rv~e~k~RL~~LE~ess~L 432 (456)
++++++++.++.+.|.+++.+...+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777665543
No 160
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=34.46 E-value=2e+02 Score=23.79 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 416 AKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 416 ~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.+.+..|-+++++.--|.-.+.+...-+++.
T Consensus 63 n~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 63 SEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666666666666666666655554
No 161
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=34.32 E-value=2e+02 Score=23.79 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=8.2
Q ss_pred hhHHHHHHhhHHHHHHHHHH
Q 012816 374 QTIDAAKANCVNLLESTKKE 393 (456)
Q Consensus 374 ~~~e~eKe~~dr~~e~~kkE 393 (456)
++++.++++.....+.+..+
T Consensus 12 ~~lk~e~e~a~drae~~e~~ 31 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEAD 31 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333433333
No 162
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=34.21 E-value=1.7e+02 Score=22.90 Aligned_cols=32 Identities=6% Similarity=0.098 Sum_probs=18.8
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 012816 336 VKEMMAVLKDVESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 336 L~ea~~~L~dL~~agfKVDWLekKLeEV~Ear 367 (456)
|.++...|......|-.++=++..|.+.....
T Consensus 18 L~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~ 49 (118)
T 3uul_A 18 LLSAEDTFQEQDDISDDVEDVKEQFATHETFM 49 (118)
T ss_dssp HHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 34445555555666777766666666554444
No 163
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=34.20 E-value=40 Score=27.75 Aligned_cols=67 Identities=7% Similarity=0.075 Sum_probs=43.3
Q ss_pred hHHHHHHHhhcccccccCcc-------cchhHH---HHHHHHHHHHHHHHhcchhhhc-cHHHHHHHHHHHhHHHhcCcc
Q 012816 284 SSILQSIISRYGDIAANCNL-------ESNSMR---AYYLECLCSVVQELQSTSLMQM-TKAKVKEMMAVLKDVESAQID 352 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-------Ks~~lR---s~ymn~Ll~LIetL~kspl~eL-S~~dL~ea~~~L~dL~~agfK 352 (456)
..+..++|+.||++..-|.- .|+.++ ...|..|..+|..|.... .+ ....|...+.. .|++
T Consensus 27 ~~fy~rlf~~~P~~~~~F~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~--~~~~~~~l~~~H~~------~gv~ 98 (143)
T 1bin_A 27 VVFYTSILEKAPAAKDLFSFLANGVDPTNPKLTGHAEKLFALVRDSAGQLKASG--TVVADAALGSVHAQ------KAVT 98 (143)
T ss_dssp HHHHHHHHHHCTTHHHHSGGGTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHS--CCCCCHHHHHHHTT------TTCC
T ss_pred HHHHHHHHHHChHHHHHhHhcccCccccCHHHHHHHHHHHHHHHHHHHHCCChH--HHHHHHHHHHHHHh------cCCC
Confidence 35677999999999987765 577774 457888888888887644 22 11125555543 3666
Q ss_pred hhhhhh
Q 012816 353 VDWLRN 358 (456)
Q Consensus 353 VDWLek 358 (456)
-+|..-
T Consensus 99 p~~f~~ 104 (143)
T 1bin_A 99 DPQFVV 104 (143)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 164
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=34.15 E-value=1.5e+02 Score=24.09 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhHHhH-HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 399 NELALKEKEVAGLKESV-AKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 399 ~eL~qKekev~d~~~rv-~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
+-+..--..+.++=.+. ..|+.||..|+.+...|+..|..+..||..
T Consensus 23 e~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 23 EIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445566655566 558999999999999999999999999865
No 165
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=33.81 E-value=30 Score=29.66 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=33.1
Q ss_pred hHHHHHHHhhcccccccCc----c-------cchhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCN----L-------ESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~----l-------Ks~~lRs---~ymn~Ll~LIetL~k 325 (456)
..++.++|+.||++-.-|. + .|+.++. ..|+.|..+|..|..
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 81 (153)
T 1lhs_A 26 QEVIIRLFQLHPETQERFAKFKNLTTIDALKSSEEVKKHGTTVLTALGRILKQKNN 81 (153)
T ss_dssp HHHHHHHHHHCHHHHTTCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHChhHHHHhHhhcCCCcHHHHcCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 5788999999999988876 3 6777776 677888888877654
No 166
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=33.81 E-value=95 Score=26.07 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=30.7
Q ss_pred hHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~------lKs~~lRs---~ymn~Ll~LIetL~k 325 (456)
..++.++|+.||++-.=|. ..|+.++. ..|+.|..+|..|..
T Consensus 26 ~~~~~rlF~~~P~~~~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld~ 76 (142)
T 3d1k_A 26 NDALSRMIVVYPQTKIYFSHWPDVTPGSPNIKAHGKKVMGGIALAVSKIDD 76 (142)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3678999999999876664 34677776 567777777776643
No 167
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.68 E-value=1.5e+02 Score=26.06 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=8.5
Q ss_pred hccHHHHHHHHHHHhHH
Q 012816 330 QMTKAKVKEMMAVLKDV 346 (456)
Q Consensus 330 eLS~~dL~ea~~~L~dL 346 (456)
.|=+..|..|...|.+-
T Consensus 28 ~lLq~qLTqAQe~l~~~ 44 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDV 44 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 168
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=33.66 E-value=1.6e+02 Score=24.90 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 012816 384 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 384 dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L 432 (456)
...+.....+|+.++..|..+-..+..+..+..-++.+-..|+.+..+-
T Consensus 42 c~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455666677776666666665555555555555555555555444443
No 169
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=33.56 E-value=2.5e+02 Score=24.84 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 414 SVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
+..+..-+|+-++.+..+...+...+-+|+..
T Consensus 74 KyeE~~RKl~~~E~dLeraeeRae~aE~k~~e 105 (147)
T 2b9c_A 74 KYEEVARKLVIIESDLERAEERAELSEGKCAE 105 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555543
No 170
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=33.25 E-value=1.7e+02 Score=22.73 Aligned_cols=32 Identities=9% Similarity=0.109 Sum_probs=18.5
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 012816 336 VKEMMAVLKDVESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 336 L~ea~~~L~dL~~agfKVDWLekKLeEV~Ear 367 (456)
|.++...|......|-.++=++..|.+.....
T Consensus 18 L~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~ 49 (119)
T 3uun_A 18 LLSAEDTLQAQGEISNDVEVVKDQFHTHEGYM 49 (119)
T ss_dssp HHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34455556666667776666666665544443
No 171
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.12 E-value=2.7e+02 Score=25.08 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012816 392 KELESQMNELALKEKEV 408 (456)
Q Consensus 392 kELEe~l~eL~qKekev 408 (456)
...+++++.|..+.+++
T Consensus 73 d~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444454444443
No 172
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=33.09 E-value=1.5e+02 Score=25.80 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHH
Q 012816 399 NELALKEKEVAGLKESVAKTKARL 422 (456)
Q Consensus 399 ~eL~qKekev~d~~~rv~e~k~RL 422 (456)
.||.....-|.+++.+|.+|+..|
T Consensus 105 ~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 105 GDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555566666665554
No 173
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=32.83 E-value=1.7e+02 Score=27.72 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=9.0
Q ss_pred hhhhhhhccccchhhhc
Q 012816 439 TQSKVTKFSQKSLADEI 455 (456)
Q Consensus 439 ~kSKV~kf~~kSl~D~l 455 (456)
++..+.+..-.+.+||.
T Consensus 148 a~~~l~~~~i~AP~~G~ 164 (369)
T 4dk0_A 148 AETNLGYTKITSPIDGT 164 (369)
T ss_dssp HHHTTCCSSCCCSCCSC
T ss_pred HHHHhhcCEEECCCCeE
Confidence 44444555555666654
No 174
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=32.81 E-value=2.4e+02 Score=24.29 Aligned_cols=45 Identities=20% Similarity=0.429 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 012816 393 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 437 (456)
Q Consensus 393 ELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~ 437 (456)
-|..|...+..-.+||+.+..+++++..+.--+|.+..+|.+.+.
T Consensus 63 RlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 63 RLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444445555566666666777777777778888888776553
No 175
>3mvc_A Globin protein 6; oxygen sensor, heme-binding protein, C. elegans, OXY transport, electron transport; HET: HEM; 1.40A {Caenorhabditis elegans}
Probab=32.76 E-value=2.2e+02 Score=24.60 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=31.1
Q ss_pred hHHHHHHHhhcccccccCcccc-----hhHHH---HHHHHHHHHHHHHhcch
Q 012816 284 SSILQSIISRYGDIAANCNLES-----NSMRA---YYLECLCSVVQELQSTS 327 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~lKs-----~~lRs---~ymn~Ll~LIetL~ksp 327 (456)
..+..++|+.||++-.=|.... +.||. ..|++|-.+|..|....
T Consensus 28 ~~~f~rLF~~~P~~k~lF~~~~~~~~~~~~~~Ha~rv~~~l~~~V~~Ldd~~ 79 (161)
T 3mvc_A 28 ISIFRNSFFKNPEIRQMIMFGTKNEGHERLKKHAQLFTVLMDDLIANLDSPS 79 (161)
T ss_dssp HHHHHHHHHHCHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHhChhHHHHhccCcccCCcHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 5789999999999877765422 22332 57788888888876543
No 176
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=32.61 E-value=2.1e+02 Score=23.51 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 012816 385 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARL 422 (456)
Q Consensus 385 r~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL 422 (456)
..|..+++.|+....+-++.+.++..+..-+.+++.+|
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34555555555555555555555555444444444443
No 177
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=32.49 E-value=1.2e+02 Score=27.97 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=35.2
Q ss_pred HHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 012816 317 CSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 317 l~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ear 367 (456)
|.||+.|..--...+|-++|.-|+ .... .+.-++||++.|-.+.+.+
T Consensus 15 l~lV~liREaEk~GfspEEV~aAl-~~~g---~~~P~~WLk~ewp~ll~~V 61 (162)
T 4dbg_B 15 LQLVSMIREGEAAGACPEEIFSAL-QYSG---TEVPLQWLRSELPYVLEMV 61 (162)
T ss_dssp HHHHHTTSTTCCSCCCHHHHHHHH-HHHT---CCCCHHHHHHHSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-HhcC---CCCcHHHHHHHHHHHHHHH
Confidence 557777777777889999988777 3332 6779999999887665544
No 178
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=32.35 E-value=49 Score=28.33 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 012816 395 ESQMNELALKEKEVAGLKESVAKTKARLSDLELE 428 (456)
Q Consensus 395 Ee~l~eL~qKekev~d~~~rv~e~k~RL~~LE~e 428 (456)
..++..|++....+..+..+|.+++.+|.++...
T Consensus 5 ~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~ 38 (182)
T 3kqg_A 5 NAQIPELKSDLEKASALNTKIRALQGSLENMSKL 38 (182)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555666666666655543
No 179
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.24 E-value=2.4e+02 Score=24.17 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=22.7
Q ss_pred ccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 012816 331 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 331 LS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ear 367 (456)
+|+..|.+=-++|.|- ||-|+.+|+|.-|..
T Consensus 16 VsnAQLDNEKsal~Yq------VdlLKD~LEe~eE~~ 46 (103)
T 4h22_A 16 VSNAQLDNEKTNFMYQ------VDTLKDMLLELEEQL 46 (103)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 4556666666677664 599999999888766
No 180
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=31.50 E-value=2.4e+02 Score=23.87 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=32.5
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ymn~Ll~LIetL~ks 326 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld~~ 82 (151)
T 1a6m_A 26 QDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHH 82 (151)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHChhHHHHhHhhcCCCcHHHhcCCHHHHHHHHHHHHHHHHHHHccCCH
Confidence 57889999999998877742 4556665 5788888888877654
No 181
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.25 E-value=1.2e+02 Score=24.53 Aligned_cols=13 Identities=31% Similarity=0.268 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhhh
Q 012816 399 NELALKEKEVAGL 411 (456)
Q Consensus 399 ~eL~qKekev~d~ 411 (456)
.+|.+++.++.++
T Consensus 47 k~L~ekd~eI~~L 59 (72)
T 3nmd_A 47 LELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 182
>1ash_A Hemoglobin (OXY); oxygen storage; HET: HEM; 2.15A {Ascaris suum} SCOP: a.1.1.2
Probab=31.23 E-value=93 Score=27.45 Aligned_cols=44 Identities=5% Similarity=0.058 Sum_probs=31.4
Q ss_pred hHHHHHHHhhcccccccCc----------ccchhHHH---HHHHHHHHHHHHHhcch
Q 012816 284 SSILQSIISRYGDIAANCN----------LESNSMRA---YYLECLCSVVQELQSTS 327 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~----------lKs~~lRs---~ymn~Ll~LIetL~ksp 327 (456)
..+...+|+.|||+..=|. .+|+.|+. ..|+.|..+|..|....
T Consensus 28 ~~fy~~LF~~~Pe~r~~F~~~~~~~~~d~~~s~~f~~q~~rl~~aL~~~i~~lDd~~ 84 (150)
T 1ash_A 28 IDLYKHMFENYPPLRKYFKSREEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRE 84 (150)
T ss_dssp HHHHHHHHHHCGGGGGGSTTTTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHChhHHHHhhhcccCChhhhhcCHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3578899999999999885 33675655 56666666676665543
No 183
>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*
Probab=31.12 E-value=1.2e+02 Score=25.21 Aligned_cols=43 Identities=5% Similarity=0.067 Sum_probs=31.9
Q ss_pred hHHHHHHHhhcccccccCccc------------chhHH---HHHHHHHHHHHHHHhcc
Q 012816 284 SSILQSIISRYGDIAANCNLE------------SNSMR---AYYLECLCSVVQELQST 326 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~lK------------s~~lR---s~ymn~Ll~LIetL~ks 326 (456)
..+..++|+.||++-.-|... |+.++ ...|..|..+|..|...
T Consensus 25 ~~~y~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~ 82 (151)
T 1q1f_A 25 TVLFARLFALEPSLLPLFQYNGRQFSSPEDSLSSPEFLDHIRKVMLVIDAAVTNVEDL 82 (151)
T ss_dssp HHHHHHHHHHCGGGGGGCCBTTBCCSSHHHHTTCHHHHHHHHHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHChHHHHhCCccccccccHHHHhhChHHHHHHHHHHHHHHHHHHhcCCH
Confidence 578899999999999988753 33344 35677787888777654
No 184
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=31.05 E-value=1.7e+02 Score=23.63 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=28.0
Q ss_pred HHHhhhHHhH-HHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 012816 406 KEVAGLKESV-AKTKARLSDLELESNRLEQIIQATQSKVT 444 (456)
Q Consensus 406 kev~d~~~rv-~e~k~RL~~LE~ess~L~~~v~~~kSKV~ 444 (456)
..+.++=.+. .-|+.||..|+.+...|+..+..+..||.
T Consensus 30 ~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 30 QKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444544455 45788888888888888888888888874
No 185
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=30.84 E-value=2.3e+02 Score=23.42 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 012816 391 KKELESQMNELALKEKEVAG 410 (456)
Q Consensus 391 kkELEe~l~eL~qKekev~d 410 (456)
++.|++-.+=|.|.+.|+..
T Consensus 55 e~~ldEA~eLl~qMelE~r~ 74 (102)
T 2qyw_A 55 DEKQQEANETLAEMEEELRY 74 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444
No 186
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.74 E-value=4e+02 Score=26.29 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH-----------HhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 012816 389 STKKELESQMNELALKEKEVAGLK-----------ESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 446 (456)
Q Consensus 389 ~~kkELEe~l~eL~qKekev~d~~-----------~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf 446 (456)
.+.|+|.+-.+.|.+.+++..-+. .++..-..|+.+||.+.++|++.|.++..-|++.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555566666666654332 2232334688999999999999998888877653
No 187
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=30.73 E-value=61 Score=27.42 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH---HHHHhhhhhhhccccch
Q 012816 391 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ---IIQATQSKVTKFSQKSL 451 (456)
Q Consensus 391 kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~---~v~~~kSKV~kf~~kSl 451 (456)
.+.|+.++.+|.+.|+++.+ .|..+...|.+|-.......- |-.++++ +..|.+.++
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~---~i~~~~~~l~~lted~~n~~~aYVT~~Di~~-i~~f~~qtv 67 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDH---LMNICTTQLRLLSEDTDSQRLAYVTCQDLRS-IADPAEQMV 67 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCHHHHHHCEEEHHHHHT-TSCTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccccceecHHHHhc-CcCCCcCeE
Confidence 34556666677777777776 677777777777654322110 1134444 555666554
No 188
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.66 E-value=1.6e+02 Score=26.89 Aligned_cols=35 Identities=3% Similarity=0.010 Sum_probs=16.4
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 012816 412 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 450 (456)
Q Consensus 412 ~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kS 450 (456)
.++|.+...++.+|..+... .-..+.-++.+. |-+
T Consensus 112 eakI~aL~~Ei~~Lr~qL~~---~R~k~~~em~Ke-Gip 146 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLDE---QRVKRDVAMAQA-GIP 146 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHT-TCC
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-CCC
Confidence 45555555555555533222 222344455554 443
No 189
>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B* 3bcq_B* 1spg_B*
Probab=30.58 E-value=83 Score=26.78 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=29.6
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ymn~Ll~LIetL~ 324 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 79 (147)
T 3bom_B 25 PQALARLLIVSPWTQRHFSTFGNLSTPAAIMGNPAVAKHGKTVMHGLDRAVQNLD 79 (147)
T ss_dssp HHHHHHHHHHSGGGGGGCGGGSCCSSHHHHHTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCccHHHHccccccCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHh
Confidence 57899999999999877753 4566655 56677777766553
No 190
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.44 E-value=5.2e+02 Score=27.50 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=7.7
Q ss_pred HhhhhHHHHHHHhhhh
Q 012816 427 LESNRLEQIIQATQSK 442 (456)
Q Consensus 427 ~ess~L~~~v~~~kSK 442 (456)
.++..|.+-|.+|+-.
T Consensus 567 ~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 567 KESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444555555544
No 191
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=30.25 E-value=1e+02 Score=25.95 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=35.5
Q ss_pred hHHHHHHHhhcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHH
Q 012816 284 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV 346 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~------lKs~~lRs---~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL 346 (456)
..++.++|+.||++-.=|. ..|+.++. ..|+.|..+|..|.. |..+...|...
T Consensus 27 ~~~~~rlF~~~P~~~~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld~----------l~~~l~~L~~~ 88 (143)
T 3bom_A 27 EQALSRMLVVYPQTKAYFSHWASVAPGSAPVKKHGITIMNQIDDCVGHMDD----------LFGFLTKLSEL 88 (143)
T ss_dssp HHHHHHHHHHSGGGGGGCTTSSCCSTTCHHHHHHHHHHHHHHHHHHTTTTC----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHHh----------HHHHHHHHHHH
Confidence 3678999999999877664 34677776 466777777665533 55555555544
No 192
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=29.89 E-value=2.5e+02 Score=24.52 Aligned_cols=50 Identities=22% Similarity=0.200 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHH-HHHHHHHHHhhhhHHHHHHHh
Q 012816 390 TKKELESQMNELALKEKEVAGLKESVAKT-KARLSDLELESNRLEQIIQAT 439 (456)
Q Consensus 390 ~kkELEe~l~eL~qKekev~d~~~rv~e~-k~RL~~LE~ess~L~~~v~~~ 439 (456)
.-..||.++.-|.++|.+.=..+..+.+. ..+|..+..+...|+.++..+
T Consensus 10 ~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i 60 (119)
T 3etw_A 10 ELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRL 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544433333222 555666655555555555433
No 193
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.81 E-value=1.9e+02 Score=30.36 Aligned_cols=20 Identities=5% Similarity=0.043 Sum_probs=8.2
Q ss_pred hhHHhHHHHHHHHHHHHHhh
Q 012816 410 GLKESVAKTKARLSDLELES 429 (456)
Q Consensus 410 d~~~rv~e~k~RL~~LE~es 429 (456)
++++++.++.++|.+++.+.
T Consensus 82 ~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 194
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=29.56 E-value=3e+02 Score=24.48 Aligned_cols=81 Identities=11% Similarity=0.140 Sum_probs=40.1
Q ss_pred chHHHHHHHhhcccccccCcccchhHHHHHH----------HHHHHHHHHHhcc--hhhhccHHHHHHHHHHHhHHHhcC
Q 012816 283 ISSILQSIISRYGDIAANCNLESNSMRAYYL----------ECLCSVVQELQST--SLMQMTKAKVKEMMAVLKDVESAQ 350 (456)
Q Consensus 283 qv~iV~~IFeKHpDIAsnf~lKs~~lRs~ym----------n~Ll~LIetL~ks--pl~eLS~~dL~ea~~~L~dL~~ag 350 (456)
-...|+..+.||-.+-.....-.+.+..... ..|-.-++.|+.. .|.+++............++.++-
T Consensus 51 Dl~~v~~ll~kh~~~e~ei~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le~l~~F~~~~~ 130 (224)
T 2iak_A 51 DLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLHNFVTRAT 130 (224)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888777666554444433221 0111111111110 123444433333334444444444
Q ss_pred cchhhhhhHHHHH
Q 012816 351 IDVDWLRNILNEI 363 (456)
Q Consensus 351 fKVDWLekKLeEV 363 (456)
--..||..+...+
T Consensus 131 ~~~~Wi~eke~~~ 143 (224)
T 2iak_A 131 NELIWLNEKEESE 143 (224)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4578998888754
No 195
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.39 E-value=2.6e+02 Score=23.67 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=5.3
Q ss_pred hhhhhhHHHHHH
Q 012816 353 VDWLRNILNEIS 364 (456)
Q Consensus 353 VDWLekKLeEV~ 364 (456)
++-|+.+|..+.
T Consensus 7 ~e~lre~l~~le 18 (97)
T 2eqb_B 7 YNQLKEDYNTLK 18 (97)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 196
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=29.35 E-value=52 Score=27.83 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=30.9
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ymn~Ll~LIetL~ 324 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~~l~~~v~~ld 79 (146)
T 2r80_B 25 AEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGGGGGCCCSSHHHHHHCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChhHHHHHHHhcCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHh
Confidence 57899999999998877753 5666665 47777777777664
No 197
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Probab=29.33 E-value=81 Score=26.76 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=30.7
Q ss_pred hHHHHHHHhhcccccccCc----c-------cchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCN----L-------ESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~----l-------Ks~~lRs---~ymn~Ll~LIetL~ 324 (456)
..++.++|+.||++-.-|. + .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 3d1k_B 25 PKALSRCLVVYPWTQRYFSGFGNLYNAEGIMSNANVAAHGIKVLHGLDRGMKNMD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSSCCSSHHHHHHCHHHHHHHHHHHHHTHHHHHTGG
T ss_pred HHHHHHHHHHCHhHHHHhcccccCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999988775 3 3566665 47777777777654
No 198
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=29.30 E-value=3.5e+02 Score=25.18 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHH-HHHhhhhHHHHHHHhhh
Q 012816 413 ESVAKTKARLSD-LELESNRLEQIIQATQS 441 (456)
Q Consensus 413 ~rv~e~k~RL~~-LE~ess~L~~~v~~~kS 441 (456)
.++.+++++|.- .+....+|.+.+..++.
T Consensus 154 ~~veelk~~l~P~~ee~r~kl~~~~~el~~ 183 (243)
T 2a01_A 154 AHVDALRTHLAPYSDELRQRLAARLEALKE 183 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444444442 23444444555555554
No 199
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=29.29 E-value=2.4e+02 Score=23.27 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=12.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012816 379 AKANCVNLLESTKKELESQMNELALKEKEV 408 (456)
Q Consensus 379 eKe~~dr~~e~~kkELEe~l~eL~qKekev 408 (456)
++--.++-+.+.+.||-....-|..++.++
T Consensus 41 ErlQyEkKLKsTK~El~~Lq~qLe~kd~ei 70 (81)
T 3qh9_A 41 ERNQYEWKLKATKAEVAQLQEQVALKDAEI 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhHHHH
Confidence 333344444444444444433343333333
No 200
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=29.09 E-value=3.1e+02 Score=24.45 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=10.0
Q ss_pred hHHhHHHHHHHHHHHHHhhhhH
Q 012816 411 LKESVAKTKARLSDLELESNRL 432 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~ess~L 432 (456)
.+.++.+.+..|.++..-..+|
T Consensus 119 ~e~~leeyK~Kl~rv~~vkkeL 140 (152)
T 4fla_A 119 KEKKLEEYKQKLARVTQVRKEL 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444454444444444443
No 201
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=28.74 E-value=1e+02 Score=26.04 Aligned_cols=41 Identities=10% Similarity=0.201 Sum_probs=29.4
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l------Ks~~lRs---~ymn~Ll~LIetL~ 324 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|.-|.
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~~~~~h~~~v~~al~~~v~~ld 76 (143)
T 1out_A 27 AEALGRMLTAYPQTKTYFSHWADLSPGSGPVKKHGGIIMGAIGKAVGLMD 76 (143)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCccHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHH
Confidence 57889999999998876643 4566654 66677777776553
No 202
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=28.64 E-value=70 Score=26.73 Aligned_cols=42 Identities=7% Similarity=0.141 Sum_probs=31.3
Q ss_pred hHHHHHHHhhcccccccCc-----ccchhHHH---HHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCN-----LESNSMRA---YYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~-----lKs~~lRs---~ymn~Ll~LIetL~k 325 (456)
..+..++|+.||++-.-|. ..|+.++. ..|..|..+|..|..
T Consensus 26 ~~~y~rlF~~~P~~~~~F~~~d~~~~~~~~~~h~~~v~~al~~~v~~ld~ 75 (141)
T 2w72_C 26 AEAYERMFLSFPTTKTYFPHFDLSHGSAQVKGQGKKVADALTNAVAHVDD 75 (141)
T ss_dssp HHHHHHHHHHCGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHChhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4788999999999988776 34566654 677777777776643
No 203
>2zs0_D Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2zfo_D* 2zs1_D* 2d2m_D* 2d2n_D*
Probab=28.59 E-value=2.4e+02 Score=23.98 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=37.6
Q ss_pred hHHHHHHHhhcccccccCc----ccchhHHHH---HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhc
Q 012816 284 SSILQSIISRYGDIAANCN----LESNSMRAY---YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESA 349 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~----lKs~~lRs~---ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~a 349 (456)
..++.++|+.||++-.-|. ..|+.++.- .|..|..+|.-|... +.|..+...|...=..
T Consensus 33 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~aH~~~v~~~l~~~v~~ldd~-------~~l~~~l~~L~~~H~~ 98 (145)
T 2zs0_D 33 VAIFDVFFTSSGVSPSMFPGGGDSSSAEFLAQVSRVISGADIAINSLTNR-------ATCDSLLSHLNAQHKA 98 (145)
T ss_dssp HHHHHHHHHHHCCCGGGSGGGGCTTSHHHHHHHHHHHHHHHHHHHTTTSH-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHhcc
Confidence 5789999999999988774 457778654 445555555555432 3355555555554433
No 204
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=28.48 E-value=2.2e+02 Score=25.35 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=4.7
Q ss_pred HHHHHhcch
Q 012816 319 VVQELQSTS 327 (456)
Q Consensus 319 LIetL~ksp 327 (456)
.++.|+++.
T Consensus 30 ~ve~l~~se 38 (185)
T 3r2p_A 30 YVSQFEGSA 38 (185)
T ss_dssp HHHHHHHSH
T ss_pred HHHHHHcch
Confidence 345555554
No 205
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=28.44 E-value=66 Score=27.17 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=30.6
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l------Ks~~lRs---~ymn~Ll~LIetL~ 324 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~d~~~~n~~~~~h~~~v~~al~~~v~~ld 76 (143)
T 1xq5_A 27 SDALSRMLAVYPQTKTYFSHWKDLSPGSAPVNKHGKTIMGGIVDAVASID 76 (143)
T ss_dssp HHHHHHHHHHCGGGGGGGTTCSCCSTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHh
Confidence 37889999999999877753 4777765 56777777776654
No 206
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=28.15 E-value=1e+02 Score=23.01 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhh-hHHhHHHHHHHHHHHHH
Q 012816 397 QMNELALKEKEVAG-LKESVAKTKARLSDLEL 427 (456)
Q Consensus 397 ~l~eL~qKekev~d-~~~rv~e~k~RL~~LE~ 427 (456)
.|..|..+-+.|.+ +-.|+.+|-.||-+||.
T Consensus 14 LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~ 45 (48)
T 3ci9_A 14 LLQQMQDKFQTISDQIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 33444444445544 45677888888777763
No 207
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_B*
Probab=27.75 E-value=83 Score=26.76 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=30.1
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ymn~Ll~LIetL~ 324 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~d~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 1out_B 25 PLALARVLIVYPWTQRYFGSFGNVSTPAAIMGNPKVAAHGKVVCGALDKAVKNMG 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGCGGGCCCSSHHHHHHCHHHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHhhcCHhHHHHHHHhCCCCcHHHhccCHHHHHHHHHHHHHHHHHHHhHh
Confidence 57899999999999887753 3666665 56666777666553
No 208
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.65 E-value=79 Score=32.15 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=9.3
Q ss_pred HhhhHHhHHHHHHHHHHHHHhh
Q 012816 408 VAGLKESVAKTKARLSDLELES 429 (456)
Q Consensus 408 v~d~~~rv~e~k~RL~~LE~es 429 (456)
++++++++.++.+.+.+++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444433
No 209
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=27.42 E-value=1.9e+02 Score=23.70 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=5.0
Q ss_pred chhhhhhHHH
Q 012816 352 DVDWLRNILN 361 (456)
Q Consensus 352 KVDWLekKLe 361 (456)
.|+||+.-|+
T Consensus 25 ~le~Lee~le 34 (86)
T 3nr7_A 25 TLETLEEMLE 34 (86)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3556554443
No 210
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.23 E-value=2.4e+02 Score=22.52 Aligned_cols=47 Identities=21% Similarity=0.145 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh------hHHhHHHHHHHHHHHHHhhhhHHHH
Q 012816 389 STKKELESQMNELALKEKEVAG------LKESVAKTKARLSDLELESNRLEQI 435 (456)
Q Consensus 389 ~~kkELEe~l~eL~qKekev~d------~~~rv~e~k~RL~~LE~ess~L~~~ 435 (456)
.+.++|+..-.++...+.+|+| .-.++.++-.+|..++.+...+..+
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444455543 1245555666666665555554443
No 211
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.21 E-value=92 Score=27.81 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 012816 387 LESTKKELESQMNEL 401 (456)
Q Consensus 387 ~e~~kkELEe~l~eL 401 (456)
.+..+..|+.++++|
T Consensus 65 aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 65 AEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 212
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=27.15 E-value=72 Score=23.38 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=13.0
Q ss_pred hHHhHHHHHHHHHHHHHhhhhHHHH
Q 012816 411 LKESVAKTKARLSDLELESNRLEQI 435 (456)
Q Consensus 411 ~~~rv~e~k~RL~~LE~ess~L~~~ 435 (456)
+..|-+++..||..||.+...|...
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 213
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=27.11 E-value=3.8e+02 Score=25.88 Aligned_cols=43 Identities=5% Similarity=0.141 Sum_probs=33.0
Q ss_pred HHHHHHHhhcccccccCcccchhH---HHHHHHHHHHHHHHHhcch
Q 012816 285 SILQSIISRYGDIAANCNLESNSM---RAYYLECLCSVVQELQSTS 327 (456)
Q Consensus 285 ~iV~~IFeKHpDIAsnf~lKs~~l---Rs~ymn~Ll~LIetL~ksp 327 (456)
.+..++|+.||++-.-|..-|+.+ ..+.+..|+.++..|....
T Consensus 27 ~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~l~~~l~~~~~~ld~~~ 72 (399)
T 4g1v_A 27 TFYKNMLTEHTELLNIFNRTNQKVGAQPNALATTVLAAAKNIDDLS 72 (399)
T ss_dssp HHHHHHHHHCGGGGGTSCHHHHHTSSHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHHHHHHhChhHHhhCCCccccchHHHHHHHHHHHHHHHhccCHH
Confidence 468899999999999888655443 4568888888888876543
No 214
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=26.69 E-value=2e+02 Score=21.56 Aligned_cols=36 Identities=8% Similarity=0.188 Sum_probs=23.6
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 412 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 412 ~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
...+..=-..|.+++....+..-+|.....++.+|.
T Consensus 30 g~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 30 GNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 335555556677777777776667777777777664
No 215
>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin, barley, ligand binding, non- symbiotic, symbiotic, evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB: 2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* 3qqq_A* 3qqr_A*
Probab=26.67 E-value=2.8e+02 Score=23.22 Aligned_cols=67 Identities=6% Similarity=0.070 Sum_probs=45.8
Q ss_pred hHHHHHHHhhcccccccCcc---------cchhHH---HHHHHHHHHHHHHHhcchhhhc-----cHHHHHHHHHHHhHH
Q 012816 284 SSILQSIISRYGDIAANCNL---------ESNSMR---AYYLECLCSVVQELQSTSLMQM-----TKAKVKEMMAVLKDV 346 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l---------Ks~~lR---s~ymn~Ll~LIetL~kspl~eL-----S~~dL~ea~~~L~dL 346 (456)
..+..++|+.||++-.-|.. .|+.++ ..+|..|..+|..|.... .| .-.+|...+..
T Consensus 34 ~~fy~rlf~~~P~~k~~F~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~--~l~~~~~~l~~Lg~~H~~---- 107 (162)
T 2oif_A 34 LRFFLKIFEIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAG--KITVRETTLKRLGGTHLK---- 107 (162)
T ss_dssp HHHHHHHHHHCGGGGGGCHHHHTCCSCGGGCHHHHHHHHHHHHHHHHHHHTHHHHT--SCCCSSSCHHHHHHHHHH----
T ss_pred HHHHHHHHHHChHHHHhcccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHcCCHH--hhhhHHHHHHHHHHHHHh----
Confidence 46788899999999988864 678775 457888888888886643 33 44555555554
Q ss_pred HhcCcchhhhhh
Q 012816 347 ESAQIDVDWLRN 358 (456)
Q Consensus 347 ~~agfKVDWLek 358 (456)
.||+-+|...
T Consensus 108 --~gV~p~~f~~ 117 (162)
T 2oif_A 108 --YGVADGHFEV 117 (162)
T ss_dssp --TTCCHHHHHH
T ss_pred --cCCCHHHHHH
Confidence 2555555443
No 216
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=26.27 E-value=1.6e+02 Score=23.81 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=25.6
Q ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 012816 412 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 448 (456)
Q Consensus 412 ~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~ 448 (456)
...+..=-..|.++..+..++.-+|...-.++.++..
T Consensus 50 g~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 50 GNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666677777777777777777777777777754
No 217
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=26.17 E-value=28 Score=27.97 Aligned_cols=33 Identities=6% Similarity=0.175 Sum_probs=25.5
Q ss_pred ccceEEeccEEeeccchHHHHHHHhhcccccccCcc
Q 012816 268 ISDSVSVGKYHVRASISSILQSIISRYGDIAANCNL 303 (456)
Q Consensus 268 vsetv~VnGFqVl~Sqv~iV~~IFeKHpDIAsnf~l 303 (456)
..+.+.|+|+.|.|++++. ++..||.++..+.+
T Consensus 3 ~~D~Iiv~G~nv~P~eIE~---~l~~~p~v~~~~~v 35 (109)
T 3gxs_A 3 ADDMIILKGVNIFPIQIET---ILLQFKELGSDYLI 35 (109)
T ss_dssp GGSCEEETTEEECHHHHHH---HHHTCTTEEEEEEE
T ss_pred ccCEEEECCEEECHHHHHH---HHHhCCCcCCcEEE
Confidence 3456899999999998765 56679999866543
No 218
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.96 E-value=98 Score=31.56 Aligned_cols=14 Identities=7% Similarity=0.021 Sum_probs=6.4
Q ss_pred hhhhhHHHHHHHHH
Q 012816 354 DWLRNILNEISEAI 367 (456)
Q Consensus 354 DWLekKLeEV~Ear 367 (456)
+=|+.-|+++.+..
T Consensus 6 ~~l~~el~~~~~~~ 19 (412)
T 3u06_A 6 AALSTEVVHLRQRT 19 (412)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 219
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=25.87 E-value=2.7e+02 Score=22.69 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=32.4
Q ss_pred HHHHHHHhhcccccccCcc---cchhHHHHHHHHHHHHHHHHhcch
Q 012816 285 SILQSIISRYGDIAANCNL---ESNSMRAYYLECLCSVVQELQSTS 327 (456)
Q Consensus 285 ~iV~~IFeKHpDIAsnf~l---Ks~~lRs~ymn~Ll~LIetL~ksp 327 (456)
.+..++|+.||++..-|.- +...-+...|+.|..+|.-|....
T Consensus 26 ~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~~~~~l~~~v~~ld~~~ 71 (140)
T 2wy4_A 26 EFYKIMFNDYPEVKPMFNMEKQISGEQPKALAMAILMAAKNIENLE 71 (140)
T ss_dssp HHHHHHHHHCGGGGGGSCHHHHHTSHHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHHHHHHHChHHHHhcCcCcccHHHHHHHHHHHHHHHHHhccCHH
Confidence 5677999999999998852 223345688888888888887654
No 220
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=25.62 E-value=1.7e+02 Score=24.64 Aligned_cols=54 Identities=7% Similarity=0.204 Sum_probs=36.0
Q ss_pred hHHHHHHHhhcccccccCcc-------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 012816 284 SSILQSIISRYGDIAANCNL-------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 347 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-------Ks~~lRs---~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~ 347 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|.-|.. |..+...|...=
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ld~----------l~~~l~~L~~~H 90 (144)
T 1spg_A 27 AEALGRMLVSFPQTKIYFSEWGQDLGPQTPQVRNHGAVIMAAVGKAVKSIDN----------LVGGLSQLSELH 90 (144)
T ss_dssp HHHHHHHHHHCGGGGGGGTTSCSCSSTTSHHHHHHHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHhHHh----------HHHHHHHHHHHH
Confidence 57889999999998776642 3555654 577777777776533 455555555443
No 221
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.52 E-value=1.2e+02 Score=24.15 Aligned_cols=10 Identities=50% Similarity=0.610 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 012816 392 KELESQMNEL 401 (456)
Q Consensus 392 kELEe~l~eL 401 (456)
++||.++.+|
T Consensus 32 ~~LE~~v~~l 41 (70)
T 1gd2_E 32 KALETQVVTL 41 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 222
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=25.34 E-value=96 Score=26.13 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=28.3
Q ss_pred hHHHHHHHhhcccccccCcc------cchhHHH---HHHHHHHHHHHHH
Q 012816 284 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQEL 323 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l------Ks~~lRs---~ymn~Ll~LIetL 323 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~f~~~~~~n~~~~~h~~~v~~al~~~v~~l 74 (141)
T 1cg5_A 26 ADALARLFELHPQTKTYFSKFSGFEACNEQVKKHGKRVMNALADATHHL 74 (141)
T ss_dssp HHHHHHHHHHCGGGGGGGTTCSCCSTTSHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHCchHHHHhHHhCCCCCCCHhHHHHHHHHHHHHHHHHHhH
Confidence 46899999999998876643 3777776 4566666655544
No 223
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.97 E-value=90 Score=26.54 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 414 SVAKTKARLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
.+...+.++..|+++..+|.+.+..+..++++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444
No 224
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.84 E-value=3.4e+02 Score=23.45 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHH
Q 012816 414 SVAKTKARLSDLELESNRLEQIIQ 437 (456)
Q Consensus 414 rv~e~k~RL~~LE~ess~L~~~v~ 437 (456)
+|.+..++...-|.....|-+.+.
T Consensus 46 qV~~L~~~~q~sE~~L~~Lqq~fs 69 (112)
T 1x79_B 46 QISALVLRAQASEILLEELQQGLS 69 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 225
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.82 E-value=6.5e+02 Score=26.74 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=7.6
Q ss_pred hhhhhHHHHHHHHHH
Q 012816 354 DWLRNILNEISEAIE 368 (456)
Q Consensus 354 DWLekKLeEV~Eare 368 (456)
+-|+.++..+...--
T Consensus 93 ~~lk~~~~q~~dndn 107 (491)
T 1m1j_A 93 NILKPGLEGAQQLDE 107 (491)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchh
Confidence 445555555554443
No 226
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.74 E-value=68 Score=23.65 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=13.2
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhh
Q 012816 421 RLSDLELESNRLEQIIQATQSKVTK 445 (456)
Q Consensus 421 RL~~LE~ess~L~~~v~~~kSKV~k 445 (456)
.|..||-+...|++.+..+|||+.-
T Consensus 21 elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555556666543
No 227
>1v4x_B Hemoglobin beta chain; oxygen transport, heme, respiratory protein, erythrocyte, ROOT effect, SWIM bladder, oxygen storage/transport complex; HET: HEM; 1.60A {Thunnus thynnus} SCOP: a.1.1.2 PDB: 1v4u_B* 1v4w_B*
Probab=24.45 E-value=87 Score=26.57 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=30.1
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ymn~Ll~LIetL~ 324 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~s~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 1v4x_B 25 PKALARCLIVYPWTQRYFGAYGDLSTPDAIKGNAKIAAHGVKVLHGLDRAVKNMD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSCCCSSHHHHHTCHHHHHHHHHHHHTTHHHHHCTT
T ss_pred HHHHHHHHHHCHhHHHHHHhhcCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhhh
Confidence 57899999999999887753 4567765 56677777766553
No 228
>2aa1_B Hemoglobin beta-C chain; ROOT effect, cooperativity, antarctic FISH, oxygen storage/transport complex; HET: HEM; 1.80A {Trematomus newnesi} SCOP: a.1.1.2 PDB: 1xq5_B* 3bj1_B* 3bj2_B* 3bj3_B*
Probab=24.14 E-value=97 Score=26.32 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=29.1
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-----------Ks~~lRs---~ymn~Ll~LIetL~ 324 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 2aa1_B 25 PATLARCLVVYPWTQRYFGKFGNLYNAAAIAQNAMVSKHGTTILNGLDRAVKNMD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGCGGGCCCSSHHHHHHCHHHHHHHHHHHHTTHHHHHCTT
T ss_pred HHHHHHHHHHCccHHHHHHHhcCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHH
Confidence 57899999999998877743 3466654 56667777666553
No 229
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.07 E-value=5.8e+02 Score=27.12 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHH
Q 012816 386 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 433 (456)
Q Consensus 386 ~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~ 433 (456)
.+.+.-.+||..+..|.++-..-- .+|..++.-|.++--+-.+|+
T Consensus 108 ~~~e~S~eLe~ri~yIK~kVd~qi---~~IrvLq~~l~~q~skIQRLE 152 (491)
T 1m1j_A 108 NYGHVSTELRRRIVTLKQRVATQV---NRIKALQNSIQEQVVEMKRLE 152 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555544322221 344444444444443333443
No 230
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=23.65 E-value=7e+02 Score=26.72 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcc-------hhhhhhHHHHHHHHH
Q 012816 315 CLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQID-------VDWLRNILNEISEAI 367 (456)
Q Consensus 315 ~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfK-------VDWLekKLeEV~Ear 367 (456)
+||++.-+.+..| .-||-.+. .+...|.+|++..-. =.|..+|+.+..++.
T Consensus 73 VilNV~G~~~~~p-DPLsPgE~-~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v 130 (526)
T 3iyk_A 73 VLLNVLGSGEEIP-DPLSPGER-GIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEV 130 (526)
T ss_pred HHHHhcccCCCCC-CCCCHhHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888887 88887764 355556666544321 146666666555544
No 231
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=23.34 E-value=46 Score=27.31 Aligned_cols=29 Identities=34% Similarity=0.383 Sum_probs=22.1
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHH
Q 012816 407 EVAGLKESVAKTKARLSDLELESNRLEQI 435 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~ess~L~~~ 435 (456)
||.-+|++|.+..+|..+||.|.+-|...
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33446778888999999999888877654
No 232
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=23.26 E-value=3.5e+02 Score=25.98 Aligned_cols=44 Identities=5% Similarity=0.225 Sum_probs=34.0
Q ss_pred hHHHHHHHhhcccccccCcccch---hHHHHHHHHHHHHHHHHhcch
Q 012816 284 SSILQSIISRYGDIAANCNLESN---SMRAYYLECLCSVVQELQSTS 327 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~lKs~---~lRs~ymn~Ll~LIetL~ksp 327 (456)
..+..++|+.||++-.-|.--|+ .-....++.|..++.-|....
T Consensus 26 ~~fy~~lf~~~P~~~~~F~~~~~~~~~q~~~l~~~l~~~~~~ld~~~ 72 (396)
T 1gvh_A 26 AHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLP 72 (396)
T ss_dssp HHHHHHHHHHCGGGGGTSCCCTTCCSHHHHHHHHHHHHHHTTGGGGG
T ss_pred HHHHHHHHHhChhHHhhCCCcchhhHHHHHHHHHHHHHHHHhccChH
Confidence 35678899999999999987554 346788888888888776543
No 233
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=23.26 E-value=1.6e+02 Score=25.05 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=31.4
Q ss_pred hHHHHHHHhhcccccccCcc--------cchhHH---HHHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL--------ESNSMR---AYYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l--------Ks~~lR---s~ymn~Ll~LIetL~k 325 (456)
..+..++|+.||++-.-|.- .|+.++ ...|..|..+|..|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~~~H~~~v~~al~~~v~~ldd 87 (150)
T 4hrt_A 35 LMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDD 87 (150)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGCCGGGGGGSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 36889999999999877653 244553 4688888888888755
No 234
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=23.12 E-value=1.4e+02 Score=25.17 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=31.3
Q ss_pred hHHHHHHHhhcccccccCcc-cch---hHHHHHHHHHHHHHHHHhc
Q 012816 284 SSILQSIISRYGDIAANCNL-ESN---SMRAYYLECLCSVVQELQS 325 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-Ks~---~lRs~ymn~Ll~LIetL~k 325 (456)
..++.++|+.||++-.-|.- .++ .=....|+.|...|.-|..
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~d~~~~~h~~~v~~al~~~v~~ld~ 70 (136)
T 1gcv_B 25 TQALDRMFKVYPWTNRYFQKRTDFRSSIHAGIVVGALQDAVKHMDD 70 (136)
T ss_dssp HHHHHHHHHHSGGGGGGTTTCTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHChHHHHHhhcccCCCccHHHHHHHHHHHHHHHhHhh
Confidence 47899999999999887754 344 3455678888888876654
No 235
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.10 E-value=2e+02 Score=22.97 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=9.4
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHH
Q 012816 404 KEKEVAGLKESVAKTKARLSDLE 426 (456)
Q Consensus 404 Kekev~d~~~rv~e~k~RL~~LE 426 (456)
-.+++...+.++..+.+||..++
T Consensus 40 Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 40 ARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444445555555555544
No 236
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=23.07 E-value=4.4e+02 Score=24.20 Aligned_cols=18 Identities=6% Similarity=0.189 Sum_probs=12.4
Q ss_pred hccHHHHHHHHHHHhHHH
Q 012816 330 QMTKAKVKEMMAVLKDVE 347 (456)
Q Consensus 330 eLS~~dL~ea~~~L~dL~ 347 (456)
.||++++..|......+.
T Consensus 118 ~Ls~eeI~~m~~~a~~~~ 135 (219)
T 4e81_A 118 GLNEDEIQKMVRDAEANA 135 (219)
T ss_dssp SCCHHHHHHHHHHHHHTH
T ss_pred cccHHHHHHHHHHHHHhh
Confidence 588888888776655543
No 237
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=22.92 E-value=3.4e+02 Score=22.85 Aligned_cols=15 Identities=47% Similarity=0.722 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 012816 387 LESTKKELESQMNEL 401 (456)
Q Consensus 387 ~e~~kkELEe~l~eL 401 (456)
++..+++|+.++.++
T Consensus 27 ~e~~k~eL~~~~~~~ 41 (107)
T 2no2_A 27 LEREKKELEDSLERI 41 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 238
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.89 E-value=3.1e+02 Score=23.59 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=18.2
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
+-.+.+||..+.. +..|.++||-|+
T Consensus 41 R~Y~~~dl~~l~~-I~~lr~~G~sl~ 65 (146)
T 3hh0_A 41 RLYTKDDLYVLQQ-IQSFKHLGFSLG 65 (146)
T ss_dssp EEBCHHHHHHHHH-HHHHHHTTCCHH
T ss_pred EeeCHHHHHHHHH-HHHHHHcCCCHH
Confidence 5678888886644 566788999654
No 239
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=22.88 E-value=4.4e+02 Score=24.06 Aligned_cols=137 Identities=12% Similarity=0.193 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcccccccCcccchhHHHH--------------------HHHHHHHHHHHHhcchhhhccHHHHHHHHHHH
Q 012816 284 SSILQSIISRYGDIAANCNLESNSMRAY--------------------YLECLCSVVQELQSTSLMQMTKAKVKEMMAVL 343 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~lKs~~lRs~--------------------ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L 343 (456)
+..|+..+.+|-.+-.++....+.+... .|+.|...-..|+... .--...|..+....
T Consensus 141 l~~v~~ll~~h~~l~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~--~~R~~~L~~~~~~~ 218 (322)
T 1u4q_A 141 LTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLA--AARGQRLEESLEYQ 218 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_pred hHHHhcCcchhhhhhHHHHH---------HHHHHhhhhhhhHHHHHHhhHHHHHHHH--------------HHHHHHHHH
Q 012816 344 KDVESAQIDVDWLRNILNEI---------SEAIEFSTQHQTIDAAKANCVNLLESTK--------------KELESQMNE 400 (456)
Q Consensus 344 ~dL~~agfKVDWLekKLeEV---------~Eare~~~~~~~~e~eKe~~dr~~e~~k--------------kELEe~l~e 400 (456)
.++.++.--..||..+-..+ ..+..++++|..+..+-+.....+..+. ..|...+..
T Consensus 219 qf~~~~~~~~~Wl~~~e~~l~~~~~g~~~~~~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~ 298 (322)
T 1u4q_A 219 QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKG 298 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHH
Q 012816 401 LALKEKEVAGLKESVAKTKARLSDL 425 (456)
Q Consensus 401 L~qKekev~d~~~rv~e~k~RL~~L 425 (456)
|..+-..+.+ .+.+-+.+|.+.
T Consensus 299 l~~rw~~l~~---~~~~R~~~L~~a 320 (322)
T 1u4q_A 299 LKGKVSDLEK---AAAQRKAKLDEN 320 (322)
T ss_dssp HHHHHHHHHH---HHHHHHHHHTC-
T ss_pred HHHHHHHHHH---HHHHHHHHHhhc
No 240
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.68 E-value=3.2e+02 Score=22.35 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=8.4
Q ss_pred hhHHHHHHhhHHHHHHHHHH
Q 012816 374 QTIDAAKANCVNLLESTKKE 393 (456)
Q Consensus 374 ~~~e~eKe~~dr~~e~~kkE 393 (456)
++++.++++.....+.+..+
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~ 31 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEAD 31 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444443334444333
No 241
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=22.64 E-value=1.9e+02 Score=26.36 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=14.5
Q ss_pred hccHHHHHHHHHHHhHHHhcCcchh
Q 012816 330 QMTKAKVKEMMAVLKDVESAQIDVD 354 (456)
Q Consensus 330 eLS~~dL~ea~~~L~dL~~agfKVD 354 (456)
-.|.++|..+. .+..|++.||-|+
T Consensus 44 ~y~~~~~~~l~-~i~~l~~~g~~l~ 67 (278)
T 1r8e_A 44 YYTDSQLIHLD-LIKSLKYIGTPLE 67 (278)
T ss_dssp EEETGGGGHHH-HHHHHHHTTCCHH
T ss_pred ccCHHHHHHHH-HHHHHHHCCCCHH
Confidence 35566665544 4566678888544
No 242
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=22.60 E-value=87 Score=24.75 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=27.8
Q ss_pred hhhHHhHHHHHHHHHHH---HHhhhhHHHHHHHhhhhhhhcccc
Q 012816 409 AGLKESVAKTKARLSDL---ELESNRLEQIIQATQSKVTKFSQK 449 (456)
Q Consensus 409 ~d~~~rv~e~k~RL~~L---E~ess~L~~~v~~~kSKV~kf~~k 449 (456)
++++.|+.+++.||..| |.+....++-|....|-+.-|.|+
T Consensus 5 aefkqrlaaiktrlqalggseaelaafekeiaafeselqaykgk 48 (73)
T 2a3d_A 5 AEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGK 48 (73)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35567778888887765 455566677777777777766554
No 243
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=22.42 E-value=1.1e+02 Score=25.86 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=29.5
Q ss_pred hHHHHHHHhhcccccccCc-----ccchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCN-----LESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~-----lKs~~lRs---~ymn~Ll~LIetL~ 324 (456)
..+..++|+.||++-.=|. ..|+.|+. ..|+.|..+|..|.
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld 74 (141)
T 2r80_A 26 GEALERLFITYPQTKTYFPHFDLSHGSAQIKGHGKKVAEALVEAANHID 74 (141)
T ss_dssp HHHHHHHHHHSGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCchHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 3788999999998777665 35666665 56777777776553
No 244
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.41 E-value=2.6e+02 Score=23.37 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhHHHh
Q 012816 333 KAKVKEMMAVLKDVES 348 (456)
Q Consensus 333 ~~dL~ea~~~L~dL~~ 348 (456)
-.++..+..+|..|..
T Consensus 31 i~e~~~~~e~l~~l~~ 46 (133)
T 1fxk_C 31 ISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 3567777777777764
No 245
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.89 E-value=2e+02 Score=28.63 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 012816 417 KTKARLSD 424 (456)
Q Consensus 417 e~k~RL~~ 424 (456)
+++..|.+
T Consensus 44 ~l~~~i~~ 51 (323)
T 1lwu_C 44 RLQQQLVD 51 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 246
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.63 E-value=2e+02 Score=26.21 Aligned_cols=8 Identities=25% Similarity=0.356 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 012816 389 STKKELES 396 (456)
Q Consensus 389 ~~kkELEe 396 (456)
+.++||..
T Consensus 96 akr~EL~a 103 (175)
T 3lay_A 96 SKRYEYNA 103 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 247
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.51 E-value=2.3e+02 Score=28.76 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 012816 387 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 447 (456)
Q Consensus 387 ~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~ 447 (456)
++.++.++++..++....|+.-.+ -=+++.+-.+-+-+|+-+|..+|-|++.|.
T Consensus 12 ~~~~~~~~~~vq~kA~~~E~~Yn~-------~~dKmeqE~lrRRkLENSIdElKG~IRcFA 65 (333)
T 4etp_B 12 IAALEKEIAALEKEISKQEKFYND-------TYNTVCKELLRSRRLENSIIEQKGTMRVYA 65 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHhcCcEEEEE
Confidence 344444444443444444443333 223333344567788899999999999993
No 248
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.43 E-value=1.6e+02 Score=25.30 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 012816 394 LESQMNELALKEKEVAGLKESVAKTKARLSDLELES 429 (456)
Q Consensus 394 LEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~es 429 (456)
+-....+|++...++.++.+.+.+++..+..||.++
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkER 41 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIER 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 249
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=21.39 E-value=4.6e+02 Score=27.36 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=13.5
Q ss_pred hhccHHHHHHHHHHHhHHH
Q 012816 329 MQMTKAKVKEMMAVLKDVE 347 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~ 347 (456)
..||++++..|......+.
T Consensus 505 ~~ls~~ei~~~~~~~~~~~ 523 (605)
T 4b9q_A 505 SGLNEDEIQKMVRDAEANA 523 (605)
T ss_dssp CSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhH
Confidence 4688888888876665544
No 250
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=21.17 E-value=4.8e+02 Score=23.94 Aligned_cols=49 Identities=10% Similarity=0.201 Sum_probs=26.6
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH
Q 012816 368 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVA 416 (456)
Q Consensus 368 e~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~ 416 (456)
++-++.+.+...++..++.+-.+--.|+.+-....+-..-+.|...||.
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~ 100 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARIT 100 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456666666666666655655666555555555554444444433
No 251
>3mkb_A Hemoglobin subunit alpha; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2 PDB: 1gcv_A* 1gcw_A*
Probab=21.13 E-value=2.3e+02 Score=24.07 Aligned_cols=54 Identities=7% Similarity=0.112 Sum_probs=35.6
Q ss_pred hHHHHHHHhhcccccccCc-----ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 012816 284 SSILQSIISRYGDIAANCN-----LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 347 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~-----lKs~~lRs---~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~ 347 (456)
..++.++|..||++-.-|. ..|+.+|. ..|..|..+|.-|. ||..+...|..+=
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~~~~~~~s~~~~aHg~~v~~al~~~v~~ld----------~l~~~l~~L~~~H 87 (140)
T 3mkb_A 26 AEALARLFATHPGAKSYFDYADYSAAGAKVQLHGGKVIRAVVSAAEHDD----------DLHAHLMVLAVTH 87 (140)
T ss_dssp HHHHHHHHHHCGGGGGGCCCSCCSTTCHHHHHHHHHHHHHHHHHHTTTT----------THHHHTHHHHHHH
T ss_pred HHHHHHHHHHChHHHhhCccccCCCCCHHHHHHHHHHHHHHHHHHHChh----------hHHHHHHHHHHHh
Confidence 3568999999999876665 35788875 46666666665443 2445555665554
No 252
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.13 E-value=2.5e+02 Score=24.16 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=12.9
Q ss_pred hhhhhhHHHHHHHHHHhhh
Q 012816 353 VDWLRNILNEISEAIEFST 371 (456)
Q Consensus 353 VDWLekKLeEV~Eare~~~ 371 (456)
++|++...+.+.+....++
T Consensus 6 ~~~~~~~~~~l~~~a~~Lk 24 (171)
T 2zvf_A 6 IEAVEEMERLLREASSILR 24 (171)
T ss_dssp THHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4677777777777666655
No 253
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=21.03 E-value=4.7e+02 Score=25.11 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=5.7
Q ss_pred HhHHHHHHHHHHHH
Q 012816 413 ESVAKTKARLSDLE 426 (456)
Q Consensus 413 ~rv~e~k~RL~~LE 426 (456)
+||.--..+|...|
T Consensus 149 eKI~RNQsKLssAE 162 (294)
T 3caz_A 149 ERIERNQQKFKDAE 162 (294)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhhhHH
Confidence 34444444444433
No 254
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=21.02 E-value=91 Score=21.78 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHh
Q 012816 417 KTKARLSDLELESNRLEQIIQAT 439 (456)
Q Consensus 417 e~k~RL~~LE~ess~L~~~v~~~ 439 (456)
-|-+||.+.|...+.+++.+..+
T Consensus 7 Sm~~Rl~kVE~qv~~md~KLd~l 29 (33)
T 2ovc_A 7 SMMGRVVKVEKQVQSIEHKLDLL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999888888877766544
No 255
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.88 E-value=3.8e+02 Score=22.62 Aligned_cols=81 Identities=15% Similarity=0.236 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHH
Q 012816 354 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 433 (456)
Q Consensus 354 DWLekKLeEV~Eare~~~~~~~~e~eKe~~dr~~e~~kkELEe~l~eL~qKekev~d~~~rv~e~k~RL~~LE~ess~L~ 433 (456)
.-|+..|+++.-.+ +.++.+.++....++..+.+.|.++..-...|.++..++.-+.+.--.-++||.....|.
T Consensus 23 ~~LR~qid~~~~e~------a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 23 RELRRQVDQLTNDK------ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 34555555554433 333444444445555555555555443333444444444444443333344555555554
Q ss_pred HHHHHhh
Q 012816 434 QIIQATQ 440 (456)
Q Consensus 434 ~~v~~~k 440 (456)
.-|.++|
T Consensus 97 eEl~FLK 103 (119)
T 3ol1_A 97 EEIAFLK 103 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 256
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=20.81 E-value=1.6e+02 Score=27.63 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=31.9
Q ss_pred hHHHHHHHhhcccccccCcc-----cchhHHH---HHHHHHHHHHHHHh
Q 012816 284 SSILQSIISRYGDIAANCNL-----ESNSMRA---YYLECLCSVVQELQ 324 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-----Ks~~lRs---~ymn~Ll~LIetL~ 324 (456)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 168 ~~~~~rlF~~~P~~~~~F~~fd~~~~n~~~~~h~~~v~~al~~~v~~ld 216 (283)
T 1c7c_A 168 AEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVD 216 (283)
T ss_dssp HHHHHHHHHHCGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChhHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHhhh
Confidence 57899999999999887765 7788876 46777777776553
No 257
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=20.76 E-value=56 Score=28.87 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=33.1
Q ss_pred ccchHHHHHHHhhcc-cccccC--cccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhh
Q 012816 281 ASISSILQSIISRYG-DIAANC--NLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR 357 (456)
Q Consensus 281 ~Sqv~iV~~IFeKHp-DIAsnf--~lKs~~lRs~ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~agfKVDWLe 357 (456)
.+.+++|..+|.++. +..-+. .+=+| -+||+||+.|...- -++...|+.||+
T Consensus 26 ssd~~lv~~lc~~~dp~~~~~~~~~~Lsq-------~vLLSLiqqls~dL------------------~~~~~~Kl~WLe 80 (139)
T 2vxg_A 26 ANDLGLVEFTLRHTDSNQAFAPEGCRLEQ-------KVLLSLIQQISADM------------------TNHNELKQRYLN 80 (139)
T ss_dssp TTCHHHHHHHHHHSCHHHHTC----CCCH-------HHHHHHHHHHHHCC------------------TTCCHHHHHHHH
T ss_pred hCcHHHHHHHHHcCCHHHhcCCCCCCccH-------HHHHHHHHHHHHHh------------------ccCcHHHHHHHH
Confidence 456678888888763 211110 22233 46899998885422 124567899987
Q ss_pred hHHHH
Q 012816 358 NILNE 362 (456)
Q Consensus 358 kKLeE 362 (456)
.-+-.
T Consensus 81 ~vl~a 85 (139)
T 2vxg_A 81 EALLA 85 (139)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 258
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=20.30 E-value=7e+02 Score=26.21 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=51.6
Q ss_pred CCChhhhHHHHHHHhhhccccccc-----------cCCCCCCCcc-ccccccccCCCCcCCCCCCCCCCCcchhhHHHHh
Q 012816 16 SNPYHECGERCFKRNGEANALGFK-----------KQSDNHNGVT-EGVISVKKNEGRKVDPTCIKASNPYHECGEHCFK 83 (456)
Q Consensus 16 sNpyHeCs~~C~~~~~~~~~~~~~-----------~~s~~~~~~~-~~~~~~k~~~~~~~~p~cpna~NpyHeC~~~C~~ 83 (456)
..||+.|+...-..++.-.+.++. .|+.+-.+.. .|-||.. .+. +-|+=-|-+|-=.
T Consensus 37 ~~~~~K~ArivG~V~gkYHPHGD~SiydaiVrmAQ~f~~r~pLldgqGNFGS~-----~Gd---~aAA~RYte~rLs--- 105 (470)
T 3ilw_A 37 DRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP-----GND---PPAAMRYTEARLT--- 105 (470)
T ss_dssp TSCCEEHHHHHHHHHHHTCCCCSTHHHHHHHHHHCTTTCSSCSEEEESCCCCS-----SSC---CCCCTTSCEEEEC---
T ss_pred CCCeeehHHHHHHHHHhhCCCcHHHHHHHHHHHhhHhhcCcceeecCCCCCCC-----CCC---ccccccceeeehh---
Confidence 458999988888877644444433 2655444433 4555422 111 2256667776211
Q ss_pred hhhcccccCccccCCcc--cccccccCCCCCCC--CCCCCcccccccccccccCC
Q 012816 84 RNGEANARGVNKESGSW--SFGRKNKASDSQPG--TPLTPRAVDKVAVGGQKANG 134 (456)
Q Consensus 84 ~~~~~~~~~~~k~s~s~--~fgrk~k~s~~~p~--~P~~~~~~~~~~~~~~~~~~ 134 (456)
+++...-.--.+.-=.| +|+=+.. .|. +|..|+=.=||+.|=|++=+
T Consensus 106 ~ia~~ll~d~d~~tvdf~~nyDg~~~----EP~vlp~~iP~lLvNGs~GIavGmA 156 (470)
T 3ilw_A 106 PLAMEMLREIDEETVDFIPNYDGRVQ----EPTVLPSRFPNLLANGSGGIAVGMA 156 (470)
T ss_dssp HHHHHHHTTGGGTCSCEEECTTSSSE----EESSCCCSSCHHHHHCEECSSTTCS
T ss_pred HHHHHHHHhcCcchhcCccCcCCCcc----CCCcccccccHHHhcCCCcccccee
Confidence 11111111111111123 4554433 355 88888877777666555443
No 259
>2w72_B Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7w_B* 1qi8_B* 1j7y_B* 1dxu_B* 1a0u_B* 1a0z_B* 1gli_B* 1j7s_B* 1o1l_B* 1o1n_B* 1y0t_B* 1y0w_B* 1o1o_B* 1ye2_B* 1y35_B* 1y22_B* 1ye0_B* 1dxt_B* 1y5f_B* 1ird_B* ...
Probab=20.23 E-value=2.7e+02 Score=23.35 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=37.8
Q ss_pred hHHHHHHHhhcccccccCcc-----------cchhHHHH---HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh-
Q 012816 284 SSILQSIISRYGDIAANCNL-----------ESNSMRAY---YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES- 348 (456)
Q Consensus 284 v~iV~~IFeKHpDIAsnf~l-----------Ks~~lRs~---ymn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL~~- 348 (456)
..+..++|+.||++-.-|.- .|+.++.- .|+.|..+|.-| ++|..+...|...=.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~~l~~~v~~l----------d~l~~~l~~L~~~H~~ 94 (146)
T 2w72_B 25 GEAYGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAQGKKVLGAFSDGLAHL----------DNLKGTFATLSELHCD 94 (146)
T ss_dssp HHHHHHHHHHSGGGGGGCTTSCCCSSHHHHHHCHHHHHHHHHHHHHHHHHTTCT----------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcChhHHHHhHhhcCCCcHHHHccCHHHHHHHHHHHHHHHHHHhCH----------HHHHHHHHHHHHHhhh
Confidence 47899999999999988863 56667654 444444444322 125556665655532
Q ss_pred -cCcchhh
Q 012816 349 -AQIDVDW 355 (456)
Q Consensus 349 -agfKVDW 355 (456)
.|++-+-
T Consensus 95 k~~V~p~~ 102 (146)
T 2w72_B 95 KLHVDPEN 102 (146)
T ss_dssp TSCCCTHH
T ss_pred ccCCChHH
Confidence 4555443
No 260
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=20.15 E-value=83 Score=22.23 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=15.3
Q ss_pred HHHHHHhHHHhcCcchhhhhhHHHHH
Q 012816 338 EMMAVLKDVESAQIDVDWLRNILNEI 363 (456)
Q Consensus 338 ea~~~L~dL~~agfKVDWLekKLeEV 363 (456)
+....+.+++ +.+||+.+|++|
T Consensus 10 d~gr~~q~~~----R~~WLq~~l~~v 31 (34)
T 1et1_A 10 NLGKHLNSME----RVEWLRKKLQDV 31 (34)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHhc
Confidence 3344555555 458999999987
No 261
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.09 E-value=8.3e+02 Score=26.25 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=17.8
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 367 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLekKLeEV~Ear 367 (456)
+-|+-.+|..-...=.-. +=+||...=.|+.|..
T Consensus 289 ~ilt~~elkqrqeee~r~-----~qew~~~hp~~~Aer~ 322 (551)
T 2b5u_A 289 DVLSPDQVKQRQDEENRR-----QQEWDATHPVEAAERN 322 (551)
T ss_dssp ECCCHHHHHHHHHHHHHH-----HHHHHHHCHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHH-----HHHhhhcCcHHHHHHH
Confidence 556666665433332222 2377777666665543
No 262
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=20.07 E-value=3.8 Score=37.63 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=30.5
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 012816 407 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 456 (456)
Q Consensus 407 ev~d~~~rv~e~k~RL~~LE~ess~L~~~v~~~kSKV~kf~~kSl~D~lL 456 (456)
++.++.+++.++++++.++..+..++.++..-=+....+|...+|+-+||
T Consensus 27 ~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LL 76 (177)
T 3a6m_A 27 RLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALL 76 (177)
T ss_dssp STTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666666666666666666666666666655543
No 263
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=20.04 E-value=3.5e+02 Score=21.87 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=20.3
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 012816 329 MQMTKAKVKEMMAVLKDVESAQIDVDWLRN 358 (456)
Q Consensus 329 ~eLS~~dL~ea~~~L~dL~~agfKVDWLek 358 (456)
..|+.++...+...|.+++ +||..
T Consensus 32 ~kl~~eek~~i~~~i~e~~------~wL~~ 55 (113)
T 3lof_A 32 GKISEADKKKVLDKCQEVI------SWLDA 55 (113)
T ss_dssp TTBCHHHHHHHHHHHHHHH------HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH------HHHHc
Confidence 4689999999999999998 79865
Done!