Query 012817
Match_columns 456
No_of_seqs 251 out of 3523
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:37:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1462 Translation initiation 100.0 4.5E-56 9.7E-61 411.9 27.3 414 1-455 8-426 (433)
2 COG0448 GlgC ADP-glucose pyrop 100.0 7.2E-50 1.6E-54 378.0 26.6 335 2-432 5-363 (393)
3 KOG1322 GDP-mannose pyrophosph 100.0 1.1E-48 2.4E-53 356.2 27.8 329 2-445 9-348 (371)
4 COG1208 GCD1 Nucleoside-diphos 100.0 1.1E-47 2.5E-52 375.8 35.9 313 2-408 1-324 (358)
5 PRK05293 glgC glucose-1-phosph 100.0 1.5E-47 3.3E-52 382.3 32.7 349 2-446 3-379 (380)
6 KOG1461 Translation initiation 100.0 1.3E-46 2.9E-51 368.4 32.9 376 3-449 25-420 (673)
7 PRK00844 glgC glucose-1-phosph 100.0 7E-46 1.5E-50 372.2 33.4 353 2-431 5-382 (407)
8 PRK02862 glgC glucose-1-phosph 100.0 6.7E-46 1.4E-50 374.0 31.5 367 2-447 3-424 (429)
9 PLN02241 glucose-1-phosphate a 100.0 4E-45 8.7E-50 369.4 32.9 363 2-443 3-420 (436)
10 PRK00725 glgC glucose-1-phosph 100.0 4.7E-44 1E-48 360.2 31.6 342 2-430 15-393 (425)
11 KOG1460 GDP-mannose pyrophosph 100.0 5.1E-44 1.1E-48 320.1 22.3 364 1-439 1-396 (407)
12 TIGR01208 rmlA_long glucose-1- 100.0 2.8E-42 6E-47 340.8 34.9 338 4-440 1-351 (353)
13 TIGR02091 glgC glucose-1-phosp 100.0 1.2E-42 2.5E-47 344.8 30.5 335 5-428 1-358 (361)
14 TIGR02092 glgD glucose-1-phosp 100.0 5E-43 1.1E-47 348.2 27.7 339 2-449 2-356 (369)
15 COG1207 GlmU N-acetylglucosami 100.0 3.4E-41 7.3E-46 318.4 29.9 352 1-448 1-389 (460)
16 PRK14358 glmU bifunctional N-a 100.0 4.9E-40 1.1E-44 336.1 32.8 349 1-448 6-391 (481)
17 PRK14355 glmU bifunctional N-a 100.0 4.6E-39 1E-43 328.6 36.4 347 2-446 3-387 (459)
18 PRK14352 glmU bifunctional N-a 100.0 9.1E-38 2E-42 320.6 34.6 348 2-447 4-390 (482)
19 PRK14356 glmU bifunctional N-a 100.0 8.2E-38 1.8E-42 319.7 33.0 343 3-443 6-368 (456)
20 PRK09451 glmU bifunctional N-a 100.0 9.5E-38 2.1E-42 318.8 32.0 347 1-447 4-385 (456)
21 TIGR01173 glmU UDP-N-acetylglu 100.0 3.1E-37 6.7E-42 315.4 34.8 334 3-437 1-354 (451)
22 PRK14353 glmU bifunctional N-a 100.0 1.7E-36 3.7E-41 309.1 35.5 349 2-448 5-397 (446)
23 PRK14354 glmU bifunctional N-a 100.0 3.8E-36 8.3E-41 307.7 35.0 337 1-438 1-358 (458)
24 PRK14359 glmU bifunctional N-a 100.0 8.6E-36 1.9E-40 302.7 36.1 197 1-244 1-203 (430)
25 PRK14357 glmU bifunctional N-a 100.0 1.8E-35 3.8E-40 301.8 30.5 176 3-225 1-179 (448)
26 PRK14360 glmU bifunctional N-a 100.0 5E-34 1.1E-38 291.4 34.9 182 3-226 2-187 (450)
27 COG1209 RfbA dTDP-glucose pyro 100.0 3.7E-34 8.1E-39 257.0 20.6 235 3-331 1-237 (286)
28 TIGR01105 galF UTP-glucose-1-p 100.0 9.8E-32 2.1E-36 256.5 23.2 235 2-329 3-276 (297)
29 PF00483 NTP_transferase: Nucl 100.0 1.2E-31 2.6E-36 252.2 20.5 237 4-331 1-247 (248)
30 cd06425 M1P_guanylylT_B_like_N 100.0 1.6E-30 3.4E-35 242.2 23.3 228 3-330 1-233 (233)
31 cd06428 M1P_guanylylT_A_like_N 100.0 2E-30 4.3E-35 245.0 23.0 230 5-328 1-256 (257)
32 PRK15480 glucose-1-phosphate t 100.0 5.7E-30 1.2E-34 243.8 24.1 207 1-245 1-211 (292)
33 PRK10122 GalU regulator GalF; 100.0 5.1E-30 1.1E-34 245.4 23.8 238 2-331 3-279 (297)
34 cd04198 eIF-2B_gamma_N The N-t 100.0 5.8E-30 1.3E-34 234.8 20.7 211 3-220 1-214 (214)
35 cd02538 G1P_TT_short G1P_TT_sh 100.0 2.9E-29 6.2E-34 234.7 23.7 233 3-329 1-237 (240)
36 TIGR01207 rmlA glucose-1-phosp 100.0 4.4E-29 9.6E-34 237.4 22.8 203 4-245 1-207 (286)
37 cd04197 eIF-2B_epsilon_N The N 100.0 4.3E-29 9.3E-34 229.7 20.5 203 3-220 1-217 (217)
38 TIGR02623 G1P_cyt_trans glucos 100.0 1E-28 2.2E-33 232.3 22.3 225 4-331 1-246 (254)
39 cd02541 UGPase_prokaryotic Pro 100.0 2.9E-28 6.3E-33 231.7 22.0 235 3-329 1-264 (267)
40 cd04189 G1P_TT_long G1P_TT_lon 100.0 1.2E-27 2.5E-32 223.4 24.2 233 3-331 1-235 (236)
41 TIGR01099 galU UTP-glucose-1-p 100.0 6.2E-28 1.3E-32 228.5 22.0 206 3-243 1-235 (260)
42 cd06422 NTP_transferase_like_1 100.0 8.4E-28 1.8E-32 222.0 20.3 194 4-244 1-197 (221)
43 PRK13389 UTP--glucose-1-phosph 100.0 2.6E-27 5.6E-32 227.0 23.0 232 3-329 9-279 (302)
44 cd02524 G1P_cytidylyltransfera 100.0 4.5E-27 9.7E-32 221.5 21.6 225 5-331 1-247 (253)
45 cd02507 eIF-2B_gamma_N_like Th 100.0 4.5E-27 9.9E-32 215.9 19.9 206 3-220 1-216 (216)
46 cd06426 NTP_transferase_like_2 100.0 1.6E-26 3.5E-31 213.3 22.2 194 5-244 1-194 (220)
47 cd04181 NTP_transferase NTP_tr 100.0 1.3E-26 2.8E-31 213.4 21.1 200 5-244 1-201 (217)
48 cd06915 NTP_transferase_WcbM_l 99.9 2.1E-26 4.6E-31 212.8 21.9 198 5-244 1-198 (223)
49 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 6.7E-24 1.5E-28 197.3 20.6 197 5-244 1-207 (231)
50 COG1210 GalU UDP-glucose pyrop 99.9 2.7E-23 6E-28 187.1 20.2 209 3-244 5-241 (291)
51 cd02508 ADP_Glucose_PP ADP-glu 99.9 4.5E-24 9.7E-29 193.9 15.2 168 5-244 1-185 (200)
52 cd02509 GDP-M1P_Guanylyltransf 99.9 1.6E-23 3.5E-28 198.8 18.4 193 3-226 1-208 (274)
53 cd02523 PC_cytidylyltransferas 99.9 6.4E-23 1.4E-27 190.5 19.8 194 5-243 1-202 (229)
54 TIGR01479 GMP_PMI mannose-1-ph 99.9 8.3E-21 1.8E-25 192.8 21.3 193 3-226 1-210 (468)
55 cd02540 GT2_GlmU_N_bac N-termi 99.9 1.7E-20 3.6E-25 174.2 21.0 198 5-245 1-206 (229)
56 COG0836 {ManC} Mannose-1-phosp 99.8 2.2E-19 4.7E-24 165.7 18.3 194 2-224 1-210 (333)
57 cd02517 CMP-KDO-Synthetase CMP 99.8 5.7E-19 1.2E-23 165.0 20.4 182 2-225 1-191 (239)
58 PRK05450 3-deoxy-manno-octulos 99.8 1.8E-18 3.9E-23 162.3 22.7 186 1-225 1-194 (245)
59 PRK15460 cpsB mannose-1-phosph 99.8 4.2E-18 9.2E-23 171.3 19.6 195 1-225 4-218 (478)
60 PRK13368 3-deoxy-manno-octulos 99.8 7.4E-18 1.6E-22 157.4 19.5 181 1-223 1-187 (238)
61 COG1213 Predicted sugar nucleo 99.7 5E-16 1.1E-20 137.9 15.1 114 2-124 3-119 (239)
62 PLN02917 CMP-KDO synthetase 99.7 5.6E-15 1.2E-19 141.0 19.6 182 1-223 46-236 (293)
63 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 1.7E-15 3.7E-20 139.1 13.7 138 308-448 44-195 (231)
64 cd05636 LbH_G1P_TT_C_like Puta 99.6 6.1E-15 1.3E-19 129.2 14.9 106 341-446 31-162 (163)
65 cd05636 LbH_G1P_TT_C_like Puta 99.6 1.2E-14 2.6E-19 127.4 15.4 111 341-451 13-149 (163)
66 PF12804 NTP_transf_3: MobA-li 99.6 5E-15 1.1E-19 129.4 11.5 118 5-137 1-122 (160)
67 COG4750 LicC CTP:phosphocholin 99.6 7E-15 1.5E-19 125.0 8.6 103 3-115 1-105 (231)
68 TIGR00454 conserved hypothetic 99.6 3.8E-14 8.3E-19 126.0 12.9 122 3-137 1-125 (183)
69 cd04745 LbH_paaY_like paaY-lik 99.6 8.1E-14 1.7E-18 120.9 14.3 98 351-448 6-113 (155)
70 TIGR02287 PaaY phenylacetic ac 99.6 7E-14 1.5E-18 124.7 14.1 102 347-448 10-121 (192)
71 cd04652 LbH_eIF2B_gamma_C eIF- 99.6 3.8E-14 8.2E-19 108.7 10.7 79 366-444 2-80 (81)
72 PRK00155 ispD 2-C-methyl-D-ery 99.5 3.5E-13 7.7E-18 124.8 18.0 120 1-130 2-125 (227)
73 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 1.2E-13 2.5E-18 130.0 14.9 104 344-447 28-154 (254)
74 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 9.3E-14 2E-18 130.0 13.9 112 344-455 128-266 (338)
75 PRK13627 carnitine operon prot 99.5 1.5E-13 3.3E-18 122.9 14.4 102 347-448 12-123 (196)
76 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 1.5E-13 3.3E-18 129.2 15.1 103 344-446 10-135 (254)
77 TIGR00453 ispD 2-C-methyl-D-er 99.5 4.5E-13 9.9E-18 123.2 17.8 115 5-130 2-120 (217)
78 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 1.8E-13 3.8E-18 123.5 14.3 103 344-446 14-134 (193)
79 TIGR00466 kdsB 3-deoxy-D-manno 99.5 3.9E-13 8.4E-18 125.1 16.9 186 5-225 2-194 (238)
80 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 3.2E-13 6.9E-18 130.7 16.5 87 343-429 101-210 (324)
81 COG0663 PaaY Carbonic anhydras 99.5 1.4E-13 3E-18 117.6 12.0 108 341-450 13-126 (176)
82 cd04646 LbH_Dynactin_6 Dynacti 99.5 2.9E-13 6.3E-18 118.2 14.2 68 381-448 39-118 (164)
83 TIGR01852 lipid_A_lpxA acyl-[a 99.5 3.1E-13 6.6E-18 127.1 15.2 103 345-447 28-153 (254)
84 TIGR01852 lipid_A_lpxA acyl-[a 99.5 6.6E-13 1.4E-17 124.8 16.4 66 382-447 103-171 (254)
85 cd02516 CDP-ME_synthetase CDP- 99.5 1.1E-12 2.5E-17 120.6 16.8 120 4-132 2-127 (218)
86 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 3E-13 6.6E-18 103.7 10.8 79 348-427 2-80 (81)
87 PLN02296 carbonate dehydratase 99.5 6.1E-13 1.3E-17 124.4 14.9 104 344-449 57-172 (269)
88 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 3.5E-13 7.6E-18 126.2 13.1 104 343-446 121-239 (338)
89 cd00710 LbH_gamma_CA Gamma car 99.5 7.9E-13 1.7E-17 116.1 14.4 106 345-450 20-135 (167)
90 cd00710 LbH_gamma_CA Gamma car 99.5 9.6E-13 2.1E-17 115.6 14.7 109 342-451 5-119 (167)
91 PRK05289 UDP-N-acetylglucosami 99.5 6.7E-13 1.4E-17 125.0 14.3 16 381-396 81-96 (262)
92 cd04650 LbH_FBP Ferripyochelin 99.5 1.1E-12 2.3E-17 113.5 13.9 97 351-447 6-112 (154)
93 cd03356 LbH_G1P_AT_C_like Left 99.5 5.2E-13 1.1E-17 101.9 10.5 76 366-441 2-78 (79)
94 cd04182 GT_2_like_f GT_2_like_ 99.5 7.5E-13 1.6E-17 118.5 13.1 120 3-135 1-125 (186)
95 PRK00892 lpxD UDP-3-O-[3-hydro 99.5 1.8E-12 3.9E-17 127.2 16.8 13 207-219 52-64 (343)
96 cd03353 LbH_GlmU_C N-acetyl-gl 99.4 1.3E-12 2.9E-17 117.8 13.8 84 365-448 52-161 (193)
97 cd04645 LbH_gamma_CA_like Gamm 99.4 1.4E-12 3.1E-17 112.9 13.4 87 362-448 16-112 (153)
98 cd05824 LbH_M1P_guanylylT_C Ma 99.4 1.2E-12 2.7E-17 100.0 11.3 77 348-424 2-79 (80)
99 PRK05289 UDP-N-acetylglucosami 99.4 1.3E-12 2.8E-17 123.1 13.5 67 382-448 107-176 (262)
100 PLN02472 uncharacterized prote 99.4 2.4E-12 5.2E-17 118.8 15.0 104 342-447 62-177 (246)
101 TIGR03308 phn_thr-fam phosphon 99.4 2.1E-12 4.5E-17 116.7 14.3 100 349-449 6-144 (204)
102 PRK09382 ispDF bifunctional 2- 99.4 8.1E-12 1.8E-16 123.0 19.5 127 1-140 4-133 (378)
103 TIGR03310 matur_ygfJ molybdenu 99.4 1.4E-12 3E-17 117.1 13.1 120 5-136 2-125 (188)
104 PRK14353 glmU bifunctional N-a 99.4 1.5E-12 3.3E-17 133.0 14.6 106 344-449 279-416 (446)
105 COG2266 GTP:adenosylcobinamide 99.4 1.5E-12 3.2E-17 110.4 11.9 110 3-127 1-112 (177)
106 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 1.7E-12 3.6E-17 127.4 14.1 14 382-395 205-218 (343)
107 cd04651 LbH_G1P_AT_C Glucose-1 99.4 1.5E-12 3.3E-17 104.7 11.1 77 353-431 3-79 (104)
108 PRK13385 2-C-methyl-D-erythrit 99.4 1.4E-12 3E-17 121.1 12.4 127 1-134 1-131 (230)
109 cd04745 LbH_paaY_like paaY-lik 99.4 3.4E-12 7.4E-17 110.7 14.1 97 344-440 17-123 (155)
110 cd05787 LbH_eIF2B_epsilon eIF- 99.4 1.5E-12 3.2E-17 99.4 10.3 76 366-441 2-78 (79)
111 PRK12461 UDP-N-acetylglucosami 99.4 3.3E-12 7.2E-17 119.2 14.7 15 382-396 79-93 (255)
112 cd02513 CMP-NeuAc_Synthase CMP 99.4 1.8E-12 3.9E-17 119.7 12.7 124 2-139 1-136 (223)
113 cd04646 LbH_Dynactin_6 Dynacti 99.4 4.1E-12 8.9E-17 111.0 14.1 101 344-444 16-132 (164)
114 TIGR01853 lipid_A_lpxD UDP-3-O 99.4 2.9E-12 6.2E-17 124.0 13.7 40 356-395 132-172 (324)
115 cd03356 LbH_G1P_AT_C_like Left 99.4 3E-12 6.4E-17 97.7 10.8 78 347-425 1-79 (79)
116 COG1212 KdsB CMP-2-keto-3-deox 99.4 7.8E-12 1.7E-16 109.9 14.4 184 1-225 2-192 (247)
117 PRK12461 UDP-N-acetylglucosami 99.4 5.6E-12 1.2E-16 117.7 14.3 85 364-448 78-172 (255)
118 cd04650 LbH_FBP Ferripyochelin 99.4 9.9E-12 2.1E-16 107.5 14.7 104 344-447 17-131 (154)
119 COG0663 PaaY Carbonic anhydras 99.4 3.5E-12 7.6E-17 109.0 11.5 94 345-438 29-132 (176)
120 TIGR02287 PaaY phenylacetic ac 99.4 4.7E-12 1E-16 112.9 12.9 96 345-440 26-131 (192)
121 PLN02296 carbonate dehydratase 99.4 8.1E-12 1.7E-16 116.9 15.0 97 344-440 69-181 (269)
122 KOG1461 Translation initiation 99.4 8.4E-13 1.8E-17 131.3 8.8 88 342-430 330-418 (673)
123 cd02503 MobA MobA catalyzes th 99.4 1.9E-12 4.2E-17 115.5 10.5 112 3-133 1-115 (181)
124 COG1207 GlmU N-acetylglucosami 99.4 6.6E-13 1.4E-17 127.0 7.5 117 330-446 277-412 (460)
125 TIGR01173 glmU UDP-N-acetylglu 99.4 2.1E-12 4.6E-17 132.2 11.7 101 344-445 278-379 (451)
126 cd03350 LbH_THP_succinylT 2,3, 99.4 1.8E-11 4E-16 104.1 14.6 93 345-437 13-117 (139)
127 PLN02728 2-C-methyl-D-erythrit 99.4 5E-12 1.1E-16 117.9 12.1 120 3-132 25-149 (252)
128 COG1043 LpxA Acyl-[acyl carrie 99.4 5.8E-12 1.3E-16 111.5 11.4 114 341-454 5-147 (260)
129 cd05824 LbH_M1P_guanylylT_C Ma 99.4 9.2E-12 2E-16 95.2 11.0 76 361-441 3-79 (80)
130 PLN02472 uncharacterized prote 99.4 1.2E-11 2.6E-16 114.1 13.7 97 344-440 76-188 (246)
131 TIGR03202 pucB xanthine dehydr 99.4 7.7E-12 1.7E-16 112.5 12.2 119 4-132 2-127 (190)
132 cd03350 LbH_THP_succinylT 2,3, 99.4 2.2E-11 4.7E-16 103.6 14.2 96 349-449 5-111 (139)
133 cd03358 LbH_WxcM_N_like WcxM-l 99.4 9.5E-12 2.1E-16 102.9 11.6 99 349-448 2-102 (119)
134 PRK00317 mobA molybdopterin-gu 99.4 6.6E-12 1.4E-16 113.2 11.6 115 1-132 2-120 (193)
135 cd04651 LbH_G1P_AT_C Glucose-1 99.3 7.3E-12 1.6E-16 100.7 10.4 80 370-450 2-81 (104)
136 PRK14358 glmU bifunctional N-a 99.3 5.3E-12 1.2E-16 129.6 11.7 107 345-452 288-420 (481)
137 PRK09451 glmU bifunctional N-a 99.3 5E-12 1.1E-16 129.5 11.4 104 344-448 282-411 (456)
138 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 3.3E-11 7.1E-16 109.8 15.5 33 415-447 151-184 (205)
139 TIGR00965 dapD 2,3,4,5-tetrahy 99.3 1.7E-11 3.7E-16 112.9 13.6 32 398-429 174-206 (269)
140 PRK02726 molybdopterin-guanine 99.3 9.2E-12 2E-16 112.8 11.7 112 1-128 6-120 (200)
141 TIGR03570 NeuD_NnaD sugar O-ac 99.3 3.8E-11 8.3E-16 108.8 15.9 98 346-448 88-188 (201)
142 PF01128 IspD: 2-C-methyl-D-er 99.3 2.2E-11 4.7E-16 110.9 13.8 118 4-133 2-125 (221)
143 PRK13627 carnitine operon prot 99.3 1.8E-11 3.9E-16 109.6 12.9 76 365-440 51-133 (196)
144 cd05635 LbH_unknown Uncharacte 99.3 2.2E-11 4.8E-16 97.0 11.9 86 344-431 10-96 (101)
145 cd05787 LbH_eIF2B_epsilon eIF- 99.3 1.6E-11 3.5E-16 93.5 10.5 77 348-425 2-79 (79)
146 cd03360 LbH_AT_putative Putati 99.3 5.9E-11 1.3E-15 106.9 16.0 98 346-448 85-185 (197)
147 TIGR00965 dapD 2,3,4,5-tetrahy 99.3 2.6E-11 5.6E-16 111.7 13.3 70 369-438 129-210 (269)
148 PRK14356 glmU bifunctional N-a 99.3 8.6E-12 1.9E-16 127.8 11.2 99 345-444 287-386 (456)
149 TIGR02665 molyb_mobA molybdopt 99.3 1.6E-11 3.5E-16 110.0 11.3 117 3-134 1-121 (186)
150 cd04649 LbH_THP_succinylT_puta 99.3 4.4E-11 9.4E-16 99.6 12.7 73 344-417 6-88 (147)
151 cd04645 LbH_gamma_CA_like Gamm 99.3 4.2E-11 9.1E-16 103.7 13.3 100 344-443 16-126 (153)
152 COG1211 IspD 4-diphosphocytidy 99.3 2.1E-11 4.7E-16 110.3 11.5 124 1-133 3-132 (230)
153 cd03359 LbH_Dynactin_5 Dynacti 99.3 5.9E-11 1.3E-15 103.6 13.4 99 343-441 25-135 (161)
154 PRK14359 glmU bifunctional N-a 99.3 2.6E-11 5.7E-16 123.4 12.5 29 300-329 205-233 (430)
155 PRK14360 glmU bifunctional N-a 99.3 1.6E-11 3.4E-16 125.7 10.7 68 345-412 262-346 (450)
156 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.3 3.4E-11 7.4E-16 110.7 11.8 105 336-441 89-204 (231)
157 TIGR03584 PseF pseudaminic aci 99.3 1.2E-10 2.6E-15 107.1 15.2 121 5-139 2-133 (222)
158 PRK11830 dapD 2,3,4,5-tetrahyd 99.3 5.2E-11 1.1E-15 110.9 12.8 76 361-436 130-217 (272)
159 cd05635 LbH_unknown Uncharacte 99.3 1.2E-10 2.5E-15 92.9 12.7 85 362-448 10-96 (101)
160 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 1.8E-10 3.9E-15 104.9 15.7 68 381-448 93-167 (205)
161 KOG1462 Translation initiation 99.3 1.8E-11 4E-16 115.3 9.1 96 341-437 330-425 (433)
162 cd03360 LbH_AT_putative Putati 99.3 8.1E-11 1.8E-15 106.0 13.1 84 341-424 86-172 (197)
163 cd03359 LbH_Dynactin_5 Dynacti 99.3 1.3E-10 2.8E-15 101.4 13.8 66 381-446 43-122 (161)
164 PRK11830 dapD 2,3,4,5-tetrahyd 99.3 4.9E-11 1.1E-15 111.0 11.7 32 415-446 177-209 (272)
165 PRK14357 glmU bifunctional N-a 99.3 2.7E-11 5.9E-16 123.9 10.9 104 342-446 252-373 (448)
166 TIGR03570 NeuD_NnaD sugar O-ac 99.2 9.2E-11 2E-15 106.3 13.1 88 343-430 91-187 (201)
167 PRK14355 glmU bifunctional N-a 99.2 6.7E-11 1.5E-15 121.2 12.6 108 343-451 284-417 (459)
168 COG2068 Uncharacterized MobA-r 99.2 1.2E-10 2.6E-15 101.8 12.0 116 2-129 5-125 (199)
169 PRK14352 glmU bifunctional N-a 99.2 1.1E-10 2.4E-15 120.3 13.8 69 380-448 357-434 (482)
170 cd04649 LbH_THP_succinylT_puta 99.2 2.6E-10 5.7E-15 95.0 13.1 96 347-450 3-108 (147)
171 PRK14354 glmU bifunctional N-a 99.2 1.2E-10 2.6E-15 119.5 11.7 64 380-443 316-380 (458)
172 COG0746 MobA Molybdopterin-gua 99.2 1.1E-10 2.3E-15 104.2 9.7 111 1-130 3-116 (192)
173 PRK14489 putative bifunctional 99.1 3.2E-10 6.9E-15 112.2 12.1 121 2-135 5-127 (366)
174 TIGR03308 phn_thr-fam phosphon 99.1 6.6E-10 1.4E-14 100.4 12.1 95 345-445 19-146 (204)
175 cd03358 LbH_WxcM_N_like WcxM-l 99.1 6.3E-10 1.4E-14 91.9 11.0 48 392-440 62-110 (119)
176 PRK10092 maltose O-acetyltrans 99.1 1.8E-09 3.9E-14 95.7 13.9 79 345-426 59-153 (183)
177 TIGR03536 DapD_gpp 2,3,4,5-tet 99.1 9.3E-10 2E-14 102.3 12.4 32 345-376 178-209 (341)
178 TIGR03536 DapD_gpp 2,3,4,5-tet 99.1 8.7E-10 1.9E-14 102.5 11.8 53 343-395 182-239 (341)
179 COG1208 GCD1 Nucleoside-diphos 99.1 6.6E-10 1.4E-14 109.4 11.6 68 358-425 256-324 (358)
180 PRK05293 glgC glucose-1-phosph 99.1 7.8E-10 1.7E-14 110.6 11.4 77 370-448 283-359 (380)
181 PRK10191 putative acyl transfe 99.1 1.6E-09 3.5E-14 92.0 11.0 96 346-446 42-142 (146)
182 TIGR02092 glgD glucose-1-phosp 99.1 8.6E-10 1.9E-14 109.8 11.0 83 350-435 277-359 (369)
183 COG0448 GlgC ADP-glucose pyrop 99.1 6.8E-10 1.5E-14 106.6 9.6 95 348-450 270-364 (393)
184 PRK00560 molybdopterin-guanine 99.0 1.4E-09 3E-14 98.2 10.8 100 2-122 8-112 (196)
185 PRK09527 lacA galactoside O-ac 99.0 2.3E-09 5.1E-14 96.2 12.1 51 343-396 59-111 (203)
186 cd02518 GT2_SpsF SpsF is a gly 99.0 1.9E-09 4.1E-14 100.3 11.9 117 5-134 2-121 (233)
187 TIGR02091 glgC glucose-1-phosp 99.0 1.2E-09 2.7E-14 108.4 11.3 83 365-448 279-361 (361)
188 COG2171 DapD Tetrahydrodipicol 99.0 1.5E-09 3.2E-14 98.4 10.0 67 381-447 139-216 (271)
189 PRK14490 putative bifunctional 99.0 1.7E-09 3.7E-14 107.2 11.3 107 2-125 174-283 (369)
190 TIGR03535 DapD_actino 2,3,4,5- 99.0 4.6E-09 1E-13 97.3 12.8 49 397-446 199-256 (319)
191 COG1043 LpxA Acyl-[acyl carrie 99.0 2.1E-09 4.5E-14 95.5 9.8 69 382-450 83-155 (260)
192 cd03357 LbH_MAT_GAT Maltose O- 99.0 3.6E-09 7.8E-14 93.1 11.3 50 344-396 47-98 (169)
193 PLN02694 serine O-acetyltransf 99.0 2.4E-09 5.3E-14 99.7 10.5 90 345-440 160-255 (294)
194 PRK10502 putative acyl transfe 99.0 3.4E-09 7.3E-14 94.3 10.9 49 344-396 56-107 (182)
195 TIGR01172 cysE serine O-acetyl 99.0 2.7E-09 5.9E-14 93.0 10.1 89 345-439 61-155 (162)
196 PRK14500 putative bifunctional 99.0 3.2E-09 6.9E-14 103.4 11.5 108 3-127 161-271 (346)
197 PRK11132 cysE serine acetyltra 99.0 7.8E-09 1.7E-13 96.4 13.6 91 344-440 140-236 (273)
198 KOG1460 GDP-mannose pyrophosph 99.0 2.1E-09 4.5E-14 98.1 9.2 92 354-450 285-390 (407)
199 TIGR03535 DapD_actino 2,3,4,5- 99.0 5.3E-09 1.2E-13 96.8 12.1 89 350-447 164-263 (319)
200 PRK10502 putative acyl transfe 99.0 5.1E-09 1.1E-13 93.1 11.2 67 381-447 72-158 (182)
201 PLN02357 serine acetyltransfer 98.9 7.2E-09 1.6E-13 99.3 11.3 99 345-448 226-330 (360)
202 PRK11132 cysE serine acetyltra 98.9 7.1E-09 1.5E-13 96.7 10.9 90 350-447 134-227 (273)
203 PRK00725 glgC glucose-1-phosph 98.9 4.2E-09 9.2E-14 106.6 9.9 73 376-449 323-395 (425)
204 PRK09677 putative lipopolysacc 98.9 1.9E-08 4.1E-13 90.3 13.0 51 346-396 44-101 (192)
205 PRK00844 glgC glucose-1-phosph 98.9 6.7E-09 1.4E-13 104.7 11.0 71 377-448 312-382 (407)
206 cd03354 LbH_SAT Serine acetylt 98.9 1.7E-08 3.6E-13 80.8 11.1 79 348-431 5-89 (101)
207 TIGR01208 rmlA_long glucose-1- 98.9 8.2E-09 1.8E-13 102.2 10.8 87 356-448 247-339 (353)
208 PLN02241 glucose-1-phosphate a 98.9 7.6E-09 1.7E-13 105.1 10.9 98 346-445 316-435 (436)
209 PLN02694 serine O-acetyltransf 98.9 7.4E-09 1.6E-13 96.5 9.2 65 381-447 181-246 (294)
210 PRK02862 glgC glucose-1-phosph 98.9 8.4E-09 1.8E-13 104.5 10.3 74 375-449 303-395 (429)
211 COG1083 NeuA CMP-N-acetylneura 98.9 1.8E-08 4E-13 88.2 10.8 130 1-140 2-136 (228)
212 cd04647 LbH_MAT_like Maltose O 98.9 2.7E-08 5.9E-13 80.7 10.9 83 348-430 4-92 (109)
213 cd05825 LbH_wcaF_like wcaF-lik 98.9 2.2E-08 4.8E-13 80.9 10.2 16 381-396 24-39 (107)
214 cd00208 LbetaH Left-handed par 98.9 2.2E-08 4.8E-13 75.7 9.7 32 367-398 4-36 (78)
215 KOG1322 GDP-mannose pyrophosph 98.8 4.5E-09 9.8E-14 97.5 6.4 90 336-431 261-351 (371)
216 PRK10191 putative acyl transfe 98.8 2.7E-08 5.7E-13 84.5 10.5 82 346-427 48-140 (146)
217 cd03354 LbH_SAT Serine acetylt 98.8 2.8E-08 6.1E-13 79.5 10.1 83 359-449 4-90 (101)
218 PRK09677 putative lipopolysacc 98.8 4.6E-08 9.9E-13 87.8 12.5 68 381-448 66-165 (192)
219 TIGR01172 cysE serine O-acetyl 98.8 3.8E-08 8.2E-13 85.8 11.6 34 414-447 113-147 (162)
220 PLN02739 serine acetyltransfer 98.8 2.6E-08 5.6E-13 94.8 10.3 90 345-440 205-300 (355)
221 cd04647 LbH_MAT_like Maltose O 98.8 4.8E-08 1E-12 79.2 10.6 86 359-447 3-92 (109)
222 PRK09527 lacA galactoside O-ac 98.8 6E-08 1.3E-12 87.1 11.2 32 399-430 133-165 (203)
223 cd00208 LbetaH Left-handed par 98.8 6.5E-08 1.4E-12 73.1 9.5 32 348-379 3-34 (78)
224 cd04180 UGPase_euk_like Eukary 98.7 1.2E-08 2.5E-13 96.2 5.8 64 4-73 2-76 (266)
225 PLN02739 serine acetyltransfer 98.7 4.3E-08 9.3E-13 93.3 9.5 35 344-378 210-246 (355)
226 PF02348 CTP_transf_3: Cytidyl 98.7 1.4E-07 3E-12 86.6 11.2 112 5-132 2-120 (217)
227 COG1045 CysE Serine acetyltran 98.7 9.3E-08 2E-12 83.0 9.1 85 344-433 66-156 (194)
228 COG2171 DapD Tetrahydrodipicol 98.7 6E-08 1.3E-12 88.1 8.1 50 381-430 157-216 (271)
229 PLN02357 serine acetyltransfer 98.6 1.7E-07 3.6E-12 90.1 10.6 86 342-427 229-326 (360)
230 KOG3121 Dynactin, subunit p25 98.6 4.5E-08 9.8E-13 79.4 5.2 97 344-443 38-149 (184)
231 cd05825 LbH_wcaF_like wcaF-lik 98.6 7.5E-07 1.6E-11 72.0 11.8 35 397-431 56-91 (107)
232 PRK10092 maltose O-acetyltrans 98.6 4.1E-07 8.9E-12 80.7 11.0 96 344-440 72-172 (183)
233 cd03357 LbH_MAT_GAT Maltose O- 98.6 4.4E-07 9.6E-12 79.8 10.8 36 397-432 118-154 (169)
234 COG1045 CysE Serine acetyltran 98.6 3E-07 6.5E-12 79.9 9.1 83 342-424 70-164 (194)
235 KOG3121 Dynactin, subunit p25 98.5 1.6E-07 3.5E-12 76.2 4.9 88 362-451 38-139 (184)
236 cd04193 UDPGlcNAc_PPase UDPGlc 98.5 8.5E-06 1.8E-10 78.8 17.6 133 2-139 15-194 (323)
237 KOG4042 Dynactin subunit p27/W 98.4 2E-07 4.2E-12 76.4 4.1 103 346-448 9-130 (190)
238 cd03349 LbH_XAT Xenobiotic acy 98.4 1.3E-06 2.8E-11 74.5 9.3 43 397-440 73-116 (145)
239 COG1861 SpsF Spore coat polysa 98.4 1.8E-06 3.8E-11 76.3 10.0 117 1-134 1-125 (241)
240 cd03349 LbH_XAT Xenobiotic acy 98.3 5.7E-06 1.2E-10 70.5 10.4 34 414-447 73-107 (145)
241 PTZ00339 UDP-N-acetylglucosami 98.2 8E-05 1.7E-09 75.4 18.4 65 2-71 106-186 (482)
242 KOG4750 Serine O-acetyltransfe 98.2 1.9E-06 4.1E-11 75.8 5.2 80 345-429 148-233 (269)
243 TIGR02353 NRPS_term_dom non-ri 98.2 9.9E-06 2.1E-10 86.6 10.5 65 382-446 618-690 (695)
244 KOG4042 Dynactin subunit p27/W 98.1 2.5E-06 5.4E-11 70.0 3.8 100 341-443 28-143 (190)
245 TIGR02353 NRPS_term_dom non-ri 98.1 1.2E-05 2.5E-10 86.1 9.5 31 399-429 162-193 (695)
246 COG0110 WbbJ Acetyltransferase 98.0 3.9E-05 8.4E-10 68.8 10.4 85 363-447 67-158 (190)
247 PLN02474 UTP--glucose-1-phosph 98.0 0.0031 6.7E-08 63.6 23.6 191 3-225 80-309 (469)
248 KOG4750 Serine O-acetyltransfe 97.9 2.9E-05 6.2E-10 68.5 6.2 33 414-446 200-233 (269)
249 COG0110 WbbJ Acetyltransferase 97.8 8.7E-05 1.9E-09 66.5 8.6 35 397-431 124-159 (190)
250 PRK00576 molybdopterin-guanine 97.7 0.00014 3E-09 64.5 8.2 96 23-131 2-105 (178)
251 COG4801 Predicted acyltransfer 97.7 0.00014 3E-09 64.6 7.7 80 369-448 22-103 (277)
252 cd00897 UGPase_euk Eukaryotic 97.5 0.013 2.8E-07 56.0 19.0 191 3-225 4-233 (300)
253 COG4801 Predicted acyltransfer 97.3 0.001 2.2E-08 59.2 8.2 95 348-443 19-115 (277)
254 PF14602 Hexapep_2: Hexapeptid 97.1 0.00069 1.5E-08 42.0 3.3 9 384-392 5-13 (34)
255 PLN02435 probable UDP-N-acetyl 96.8 0.11 2.5E-06 52.9 18.1 194 3-224 117-363 (493)
256 PRK13412 fkp bifunctional fuco 96.7 0.0087 1.9E-07 65.5 10.3 62 377-438 333-396 (974)
257 PF01704 UDPGP: UTP--glucose-1 96.7 0.089 1.9E-06 52.9 16.7 132 3-139 57-228 (420)
258 TIGR03552 F420_cofC 2-phospho- 96.6 0.009 1.9E-07 53.7 7.8 85 33-127 29-117 (195)
259 cd06424 UGGPase UGGPase cataly 96.2 0.024 5.2E-07 54.4 8.8 62 5-71 3-76 (315)
260 COG4284 UDP-glucose pyrophosph 96.2 0.31 6.7E-06 48.8 16.5 40 3-46 106-146 (472)
261 PF07959 Fucokinase: L-fucokin 96.0 0.015 3.4E-07 58.5 6.9 51 370-420 274-324 (414)
262 PLN02830 UDP-sugar pyrophospho 95.6 1 2.2E-05 47.6 18.2 131 3-139 129-311 (615)
263 cd00761 Glyco_tranf_GTA_type G 95.6 0.21 4.6E-06 41.5 11.2 96 29-126 3-102 (156)
264 PF07959 Fucokinase: L-fucokin 95.2 0.033 7.1E-07 56.1 5.7 51 386-436 273-323 (414)
265 PF00535 Glycos_transf_2: Glyc 94.4 0.4 8.6E-06 40.7 9.8 108 28-137 3-114 (169)
266 cd04195 GT2_AmsE_like GT2_AmsE 88.0 6.8 0.00015 34.6 10.9 100 28-129 3-108 (201)
267 cd04186 GT_2_like_c Subfamily 87.9 7.7 0.00017 32.6 10.8 96 29-129 3-102 (166)
268 PF01983 CofC: Guanylyl transf 87.8 0.56 1.2E-05 42.7 3.5 109 3-127 1-114 (217)
269 cd04179 DPM_DPG-synthase_like 87.3 4.6 0.0001 35.0 9.2 103 29-135 3-113 (185)
270 PRK13412 fkp bifunctional fuco 86.8 0.84 1.8E-05 50.5 4.7 56 362-417 335-392 (974)
271 cd06423 CESA_like CESA_like is 85.1 8.7 0.00019 32.3 9.6 98 29-129 3-106 (180)
272 cd04188 DPG_synthase DPG_synth 83.5 8.5 0.00018 34.4 9.2 104 29-135 3-116 (211)
273 cd06439 CESA_like_1 CESA_like_ 83.5 19 0.00041 33.1 11.8 105 22-130 26-138 (251)
274 cd06442 DPM1_like DPM1_like re 83.1 7.3 0.00016 35.0 8.7 102 29-134 3-111 (224)
275 PF04519 Bactofilin: Polymer-f 83.1 1.8 4E-05 34.1 4.0 61 386-448 36-97 (101)
276 PRK10073 putative glycosyl tra 81.6 12 0.00025 36.6 9.9 102 29-135 12-119 (328)
277 cd06427 CESA_like_2 CESA_like_ 81.5 23 0.0005 32.4 11.5 105 29-136 7-119 (241)
278 cd04184 GT2_RfbC_Mx_like Myxoc 80.9 16 0.00035 32.1 9.9 94 35-132 15-115 (202)
279 cd02510 pp-GalNAc-T pp-GalNAc- 79.3 33 0.00072 32.7 12.2 101 29-131 4-113 (299)
280 COG1920 Predicted nucleotidylt 79.2 6.1 0.00013 34.8 6.0 112 3-135 1-118 (210)
281 COG1664 CcmA Integral membrane 78.4 9.3 0.0002 32.4 6.9 32 399-430 86-117 (146)
282 PRK11204 N-glycosyltransferase 77.7 18 0.00039 36.5 10.2 97 28-128 59-161 (420)
283 KOG2388 UDP-N-acetylglucosamin 77.3 2.5 5.4E-05 42.5 3.6 38 3-44 98-138 (477)
284 cd02525 Succinoglycan_BP_ExoA 76.9 15 0.00033 33.4 8.8 100 29-133 6-113 (249)
285 cd06433 GT_2_WfgS_like WfgS an 76.5 21 0.00046 31.0 9.3 96 29-129 4-103 (202)
286 PRK10018 putative glycosyl tra 75.2 51 0.0011 31.3 11.9 98 29-128 11-112 (279)
287 PTZ00260 dolichyl-phosphate be 74.5 40 0.00087 32.9 11.3 107 29-135 76-199 (333)
288 cd04192 GT_2_like_e Subfamily 74.3 28 0.00061 31.1 9.7 102 28-131 2-112 (229)
289 cd06434 GT2_HAS Hyaluronan syn 73.4 38 0.00082 30.6 10.4 95 29-127 6-103 (235)
290 cd06437 CESA_CaSu_A2 Cellulose 71.9 61 0.0013 29.3 11.4 97 29-125 7-111 (232)
291 PRK14583 hmsR N-glycosyltransf 71.8 29 0.00062 35.4 10.0 98 27-128 79-182 (444)
292 TIGR03111 glyc2_xrt_Gpos1 puta 71.8 42 0.0009 34.2 11.1 97 28-128 54-158 (439)
293 PLN02726 dolichyl-phosphate be 71.5 41 0.0009 30.8 10.2 105 29-135 15-127 (243)
294 cd04187 DPM1_like_bac Bacteria 69.7 54 0.0012 28.2 10.1 54 79-133 57-111 (181)
295 cd06435 CESA_NdvC_like NdvC_li 69.2 50 0.0011 29.8 10.2 98 28-128 3-111 (236)
296 KOG2978 Dolichol-phosphate man 68.7 83 0.0018 27.9 10.3 105 33-138 17-125 (238)
297 cd04196 GT_2_like_d Subfamily 68.6 41 0.00089 29.6 9.4 97 28-127 3-105 (214)
298 cd06421 CESA_CelA_like CESA_Ce 66.4 98 0.0021 27.7 12.0 98 28-128 6-111 (234)
299 cd02526 GT2_RfbF_like RfbF is 65.2 59 0.0013 29.3 9.8 85 32-123 7-97 (237)
300 COG1664 CcmA Integral membrane 64.4 25 0.00055 29.8 6.4 70 378-448 48-118 (146)
301 TIGR03472 HpnI hopanoid biosyn 64.1 90 0.0019 30.9 11.5 101 28-130 46-155 (373)
302 PRK10714 undecaprenyl phosphat 64.0 58 0.0012 31.7 9.9 55 79-134 67-122 (325)
303 TIGR03469 HonB hopene-associat 58.7 1.4E+02 0.003 29.7 11.8 105 28-133 45-165 (384)
304 PF04519 Bactofilin: Polymer-f 58.0 23 0.00049 27.8 4.8 29 402-430 68-96 (101)
305 cd06438 EpsO_like EpsO protein 55.5 1.4E+02 0.0029 25.8 10.8 96 28-128 2-108 (183)
306 cd04185 GT_2_like_b Subfamily 55.2 86 0.0019 27.4 8.8 91 34-127 9-105 (202)
307 cd02522 GT_2_like_a GT_2_like_ 54.9 96 0.0021 27.5 9.2 95 28-131 4-102 (221)
308 TIGR01556 rhamnosyltran L-rham 54.7 1E+02 0.0022 28.9 9.7 91 35-130 8-102 (281)
309 cd02520 Glucosylceramide_synth 54.0 1.5E+02 0.0033 25.9 11.2 96 29-126 7-111 (196)
310 PF07302 AroM: AroM protein; 53.0 1.1E+02 0.0024 27.9 8.9 97 5-114 91-189 (221)
311 cd06420 GT2_Chondriotin_Pol_N 52.6 1.1E+02 0.0023 26.1 8.9 95 29-126 3-104 (182)
312 PF13641 Glyco_tranf_2_3: Glyc 51.5 53 0.0011 29.5 6.9 103 28-132 6-117 (228)
313 PRK11498 bcsA cellulose syntha 50.9 1.8E+02 0.0039 32.5 11.7 101 28-136 265-373 (852)
314 PF10111 Glyco_tranf_2_2: Glyc 48.7 1.7E+02 0.0038 27.5 10.2 37 88-124 74-111 (281)
315 COG1215 Glycosyltransferases, 47.5 1.5E+02 0.0033 29.7 10.3 102 28-132 59-168 (439)
316 TIGR03030 CelA cellulose synth 46.6 2.5E+02 0.0054 30.8 12.1 96 28-128 136-255 (713)
317 cd04191 Glucan_BSP_ModH Glucan 44.4 2.7E+02 0.0058 25.9 11.8 106 28-136 4-129 (254)
318 cd06436 GlcNAc-1-P_transferase 43.4 1.8E+02 0.004 25.3 8.9 95 29-126 3-114 (191)
319 KOG2638 UDP-glucose pyrophosph 42.6 27 0.00058 34.7 3.4 42 399-440 449-495 (498)
320 PF09837 DUF2064: Uncharacteri 42.0 89 0.0019 25.5 6.1 84 40-129 1-88 (122)
321 cd06913 beta3GnTL1_like Beta 1 40.0 2.7E+02 0.0058 24.7 11.7 101 29-131 3-114 (219)
322 cd02511 Beta4Glucosyltransfera 39.6 2.9E+02 0.0062 24.9 10.5 87 35-130 13-100 (229)
323 PRK10063 putative glycosyl tra 38.2 3.2E+02 0.007 25.2 11.1 90 34-129 13-109 (248)
324 PRK13915 putative glucosyl-3-p 36.2 3.2E+02 0.0068 26.3 9.9 106 29-137 37-153 (306)
325 COG1216 Predicted glycosyltran 33.8 1.8E+02 0.004 27.7 7.9 103 30-135 11-118 (305)
326 COG1581 Ssh10b Archaeal DNA-bi 32.1 2E+02 0.0044 21.9 5.8 51 26-76 4-58 (91)
327 PF13704 Glyco_tranf_2_4: Glyc 32.1 2.1E+02 0.0045 21.6 6.6 25 35-59 5-29 (97)
328 PF13562 NTP_transf_4: Sugar n 28.0 2E+02 0.0043 24.6 6.2 49 5-57 2-50 (156)
329 TIGR00285 DNA-binding protein 25.5 1.5E+02 0.0033 22.6 4.4 34 29-62 4-39 (87)
330 PF05060 MGAT2: N-acetylglucos 25.2 1.7E+02 0.0038 28.7 5.9 57 15-72 24-82 (356)
331 PRK05782 bifunctional sirohydr 24.0 1.4E+02 0.003 29.3 5.0 53 2-56 5-71 (335)
332 PRK10481 hypothetical protein; 23.7 5.7E+02 0.012 23.4 10.3 83 36-125 118-203 (224)
333 PF02641 DUF190: Uncharacteriz 23.1 1.1E+02 0.0024 23.9 3.5 27 31-57 16-42 (101)
334 TIGR03455 HisG_C-term ATP phos 20.3 1.7E+02 0.0037 23.0 4.0 49 7-56 47-95 (100)
No 1
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-56 Score=411.94 Aligned_cols=414 Identities=33% Similarity=0.575 Sum_probs=322.6
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
|+|||||+|||.|+||--+ +...||||||++|+|||+|+|.+|.++|+++++|++.+.+ .+++++.+.+...-++..-
T Consensus 8 ~efqavV~a~~ggt~~p~~-~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e-~~~i~~al~~~~~l~~~~~ 85 (433)
T KOG1462|consen 8 SEFQAVVLAGGGGTRMPEV-TSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDE-KLDIESALGSNIDLKKRPD 85 (433)
T ss_pred HHhhhheeecCCceechhh-hhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHH-HHHHHHHHhcCCccccccc
Confidence 3689999999999999666 8899999999999999999999999999999999998654 3577877765443333322
Q ss_pred EEEccC----CcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCccc
Q 012817 81 VATVPE----DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (456)
Q Consensus 81 ~~~~~~----~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~ 156 (456)
++..+. ..||+++|+.....+..+||+++.||++++.++..++++++..++.+.+++.... +.....|.+.+
T Consensus 86 ~v~ip~~~~~d~gtadsLr~Iy~kikS~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~----s~~~~pgqk~k 161 (433)
T KOG1462|consen 86 YVEIPTDDNSDFGTADSLRYIYSKIKSEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNAL----SEVPIPGQKGK 161 (433)
T ss_pred EEEeecccccccCCHHHHhhhhhhhccCCEEEEecccccCCCcHHHHHHHhccChhHhHHhcccc----ccccccCcccc
Confidence 333332 4699999999999998889999999999999999999999998888776666322 12222333322
Q ss_pred CCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccc
Q 012817 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD 236 (456)
Q Consensus 157 ~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d 236 (456)
+...+.++..+++++++.+.....+.++++.++..++|++|+++..+++.++++|+|++++++ ++.+.++..||+.|
T Consensus 162 --~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d-~l~~~~sisSfk~~ 238 (433)
T KOG1462|consen 162 --KKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVID-LLSEKESISSFKAD 238 (433)
T ss_pred --cccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHH-HHhcCCcceeeccc
Confidence 234568899999999988887766788889999999999999999999999999999999996 56777788999999
Q ss_pred hhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcc
Q 012817 237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL 316 (456)
Q Consensus 237 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i 316 (456)
|+|++++.|++..+...+.-. .-. +.+... + +.|.-...+..+|++|..+....+.++
T Consensus 239 f~P~lvkkQ~q~~~~~~~~~~---------~~l--------~t~~~~-~----~d~~~~~~d~ik~y~~~~p~e~~~~ra 296 (433)
T KOG1462|consen 239 FLPYLVKKQFQKNPPLKKNET---------SIL--------PTPNLN-N----PDGIHSPDDRIKCYAYILPTESLFVRA 296 (433)
T ss_pred ccchhhhhhhhcCCCcccccc---------ccc--------CCcccc-C----cccccCcccceeeeEEEccCccceEEe
Confidence 999999999876544321100 000 000100 0 000000011368899999988888899
Q ss_pred cCHHHHHHHhHhh-hccccccCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEE
Q 012817 317 NSIQAFMDINRDV-IGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV 395 (456)
Q Consensus 317 ~~~~~y~~~~~~~-l~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i 395 (456)
+++..|+++|++- +..-+ . ....+...+.. ...+|..++++++|.|++++.|+.|+||.+|.||+.++|
T Consensus 297 NtL~~y~eiN~~k~~~~l~---~-----e~~~~k~~~~~--~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v 366 (433)
T KOG1462|consen 297 NTLLSYMEINRDKKLKKLC---S-----EAKFVKNYVKK--VALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKV 366 (433)
T ss_pred cchHHHHhhhHHHHHHHhc---c-----ccccccchhhh--eeccchhhccCCCceecccceeeeeeecCCccccCCcEE
Confidence 9999999999632 11110 0 01111111111 145678899999999999999999999999999999999
Q ss_pred eCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcCCeeeecc
Q 012817 396 VNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKE 455 (456)
Q Consensus 396 ~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~~~~~~~ 455 (456)
.+|+||+||+||+++.|+|||||.++.||+|+.|.+|.||+|.+|.++....++++...+
T Consensus 367 ~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yvVeak~~~~~ev~~~~~ 426 (433)
T KOG1462|consen 367 ANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYVVEAKGKHGGEVLVSNE 426 (433)
T ss_pred EeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCCcEEcccccccccEeeccc
Confidence 999999999999999999999999999999999999999999999999999999987654
No 2
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-50 Score=378.01 Aligned_cols=335 Identities=24% Similarity=0.386 Sum_probs=267.4
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhh---hccCcc
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA---AYVDRL 77 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~---~~~~~~ 77 (456)
++.|+|||||.|+||.|| |..++||-+||+|| +||+++|+++.++|+.+|.|++.++..+ +..|++. |.+++.
T Consensus 5 ~~laiILaGg~G~rL~~L-T~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~S--L~~Hi~~G~~w~l~~~ 81 (393)
T COG0448 5 NVLAIILAGGRGSRLSPL-TKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHS--LNDHIGRGWPWDLDRK 81 (393)
T ss_pred ceEEEEEcCCCCCccchh-hhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhH--HHHHhhCCCccccccc
Confidence 467999999999999999 99999999999998 8999999999999999999999877654 3333332 323332
Q ss_pred ceEEEEcc------C---CcChHHHHHHHHhcC---CCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCC
Q 012817 78 HVEVATVP------E---DVGTAGALRAIAHHL---TAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL 145 (456)
Q Consensus 78 ~i~~~~~~------~---~~gt~~al~~~~~~l---~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~ 145 (456)
.-.+...+ . ..||++|+++-+..+ ..++++++.||++++.|++.|+++|.+.+|++|+++.+++..+
T Consensus 82 ~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~e- 160 (393)
T COG0448 82 NGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREE- 160 (393)
T ss_pred cCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHh-
Confidence 22222211 1 258999999865443 4578999999999999999999999999999999999998654
Q ss_pred ccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817 146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (456)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~ 225 (456)
+++||++.+|++++++. +.|++..+ .....++++|+|+|++++|.++|.
T Consensus 161 --------------as~fGim~~D~~~~i~~-F~eKp~~~----------------~~~~~laSMgiYIf~~~~L~~~L~ 209 (393)
T COG0448 161 --------------ASRFGVMNVDENGRIIE-FVEKPADG----------------PPSNSLASMGIYIFNTDLLKELLE 209 (393)
T ss_pred --------------hhhcCceEECCCCCEEe-eeeccCcC----------------CcccceeeeeeEEEcHHHHHHHHH
Confidence 66799999999998654 44322210 012237999999999999999986
Q ss_pred cC----ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCccee
Q 012817 226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 301 (456)
Q Consensus 226 ~~----~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (456)
+. .+..+|.+|+||.+++++ .
T Consensus 210 ~~~~~~~~~~DfgkdiIp~~~~~~-------------------------------------------------------~ 234 (393)
T COG0448 210 EDAKDPNSSHDFGKDIIPKLLERG-------------------------------------------------------K 234 (393)
T ss_pred HHhcccCccccchHHHHHHHHhcC-------------------------------------------------------C
Confidence 42 346889999999987643 2
Q ss_pred eEEEEecCcchhhcccCHHHHHHHhHhhhccccccCCC----cccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCe
Q 012817 302 CCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGY----NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCS 377 (456)
Q Consensus 302 ~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~----~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~ 377 (456)
+++| ++.+||++++|+++||++|++++...+.++.+ +..+. .-..|++.+..+..+ .+++|++||.|.. +
T Consensus 235 v~AY--~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~-~~~~pPak~~~~s~v-~nSLv~~GciI~G--~ 308 (393)
T COG0448 235 VYAY--EFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTK-NKNLPPAKFVNDSEV-SNSLVAGGCIISG--T 308 (393)
T ss_pred EEEE--eccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeec-CCCCCCceEecCceE-eeeeeeCCeEEEe--E
Confidence 4566 78999999999999999999999866555432 12222 223567777666665 7899999999986 8
Q ss_pred EeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCe
Q 012817 378 VKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDC 432 (456)
Q Consensus 378 i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~ 432 (456)
|.+|+|+.++.|+++|.|.+|+||++|.||++|.|++|||.++|.|++|++|.+.
T Consensus 309 V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 309 VENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred EEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 9999999999999999999999999999999999999999999999999888644
No 3
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.1e-48 Score=356.21 Aligned_cols=329 Identities=21% Similarity=0.389 Sum_probs=230.3
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~ 81 (456)
.|+||||-||.|+||+|| |.++|||++|++++|||+|.+++|.++|+++|++++++... .+..++...+..++.+++
T Consensus 9 ~vkaiILvGG~GTRLrPL-T~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~--sl~~~~~k~y~~~lgVei 85 (371)
T KOG1322|consen 9 SVKAIILVGGYGTRLRPL-TLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSE--SLNRHLSKAYGKELGVEI 85 (371)
T ss_pred ceeEEEEecCCCceeece-eccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcH--HHHHHHHHHhhhccceEE
Confidence 489999999999999999 99999999999999999999999999999999999987643 222223222333455655
Q ss_pred EE--ccCCcChHHHHHHHHhcC---CCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCccc
Q 012817 82 AT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (456)
Q Consensus 82 ~~--~~~~~gt~~al~~~~~~l---~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~ 156 (456)
.. +.++.++++.+..+.+.+ .+.+|+|+++|++++.++.+|+++|++++++.|+++.++..
T Consensus 86 ~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vde-------------- 151 (371)
T KOG1322|consen 86 LASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDE-------------- 151 (371)
T ss_pred EEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccC--------------
Confidence 54 556666666665555554 23379999999999999999999999999999999987752
Q ss_pred CCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccc
Q 012817 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD 236 (456)
Q Consensus 157 ~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d 236 (456)
|+.||++..|+++.++.++.| |+. ...++.+|+|+|+|++++|..++.. -.|+.++
T Consensus 152 ---pSkyGvv~~d~~~grV~~F~E-----KPk-------------d~vsnkinaGiYi~~~~vL~ri~~~---ptSiekE 207 (371)
T KOG1322|consen 152 ---PSKYGVVVIDEDTGRVIRFVE-----KPK-------------DLVSNKINAGIYILNPEVLDRILLR---PTSIEKE 207 (371)
T ss_pred ---ccccceEEEecCCCceeEehh-----Cch-------------hhhhccccceEEEECHHHHhHhhhc---ccchhhh
Confidence 677999999996666677764 321 2246778999999999999988632 3669999
Q ss_pred hhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcc
Q 012817 237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL 316 (456)
Q Consensus 237 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i 316 (456)
++|.+++. ++.++| ..++||.++
T Consensus 208 ifP~~a~~-------------------------------------------------------~~l~a~--~l~gfWmDI 230 (371)
T KOG1322|consen 208 IFPAMAEE-------------------------------------------------------HQLYAF--DLPGFWMDI 230 (371)
T ss_pred hhhhhhhc-------------------------------------------------------CceEEE--ecCchhhhc
Confidence 99987653 234455 568999999
Q ss_pred cCHHHHHHHhHhhhccccccCC-----CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECC
Q 012817 317 NSIQAFMDINRDVIGEANHLSG-----YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGS 391 (456)
Q Consensus 317 ~~~~~y~~~~~~~l~~~~~~~~-----~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~ 391 (456)
+++++|++....+++..+.... ...+..+..+.+.+.+|.+|.|++|+ +||.+|+|++
T Consensus 231 Gqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~v-----------------vIG~r~~i~~ 293 (371)
T KOG1322|consen 231 GQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNV-----------------VIGPRVRIED 293 (371)
T ss_pred CCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCCc-----------------eECCCcEecC
Confidence 9999999997776653322110 01111233333444444333333333 5555666666
Q ss_pred CcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEec-CeEECCCCEECCCcE
Q 012817 392 NVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCE 445 (456)
Q Consensus 392 ~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~ 445 (456)
+++|.+|+++.++.++..++|..++++.++.||.++.|+ .|+||++++|..--.
T Consensus 294 gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~ 348 (371)
T KOG1322|consen 294 GVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDY 348 (371)
T ss_pred ceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEecccc
Confidence 666666666666666666666666666666666555554 355555555544333
No 4
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-47 Score=375.80 Aligned_cols=313 Identities=23% Similarity=0.437 Sum_probs=224.6
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~ 81 (456)
.|+|||||||.|+||+|+ |..+||||+|++|||||+|+|++|.++|++++++.+++. .+++++++.+.+....++.+
T Consensus 1 ~mkavILagG~GtRLrPl-T~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~--~~~i~~~~~d~~~~~~~I~y 77 (358)
T COG1208 1 PMKAVILAGGYGTRLRPL-TDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYL--GEQIEEYFGDGEGLGVRITY 77 (358)
T ss_pred CceEEEEeCCcccccccc-ccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccc--hHHHHHHHhcccccCCceEE
Confidence 489999999999999999 999999999999999999999999999999999999876 45788888775434456888
Q ss_pred EEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCC
Q 012817 82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG 161 (456)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (456)
+.+.++.||+++|+.+.+.+..++|++++||.+++.++..++++|+++++.+++.....+. +.
T Consensus 78 ~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~-----------------~~ 140 (358)
T COG1208 78 VVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD-----------------PS 140 (358)
T ss_pred EecCCcCccHHHHHHHHHhcCCCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC-----------------CC
Confidence 8888889999999999999977899999999999999999999999998888877766542 35
Q ss_pred cccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccchhHHH
Q 012817 162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYL 241 (456)
Q Consensus 162 ~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d~l~~l 241 (456)
.||++.+++++..+..+.+++..+ ...++++++|+|+|++++|..+ +. ....++..|++|.+
T Consensus 141 ~~Gvv~~~~~~~~v~~f~ekp~~~----------------~~~~~~in~Giyi~~~~v~~~i-~~-~~~~~~~~~~~~~l 202 (358)
T COG1208 141 EFGVVETDDGDGRVVEFREKPGPE----------------EPPSNLINAGIYIFDPEVFDYI-EK-GERFDFEEELLPAL 202 (358)
T ss_pred cCceEEecCCCceEEEEEecCCCC----------------CCCCceEEeEEEEECHHHhhhc-cc-CCcccchhhHHHHH
Confidence 689998885544566665432100 2357899999999999999833 32 23456667899999
Q ss_pred hHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHHH
Q 012817 242 VRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQA 321 (456)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~~ 321 (456)
++.+. .++.| ...+||.+++++++
T Consensus 203 ~~~~~------------------------------------------------------~v~~~--~~~g~W~dig~p~d 226 (358)
T COG1208 203 AAKGE------------------------------------------------------DVYGY--VFEGYWLDIGTPED 226 (358)
T ss_pred HhCCC------------------------------------------------------cEEEE--EeCCeEEeCCCHHH
Confidence 87542 12344 45679999999999
Q ss_pred HHHHhHhhhccccccCCC-----------cccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEEC
Q 012817 322 FMDINRDVIGEANHLSGY-----------NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIG 390 (456)
Q Consensus 322 y~~~~~~~l~~~~~~~~~-----------~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig 390 (456)
|.+++..++......... ..+.++.++++++.|++++.|++++.||++|.|++++.|.+|+|.++|.|+
T Consensus 227 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~ 306 (358)
T COG1208 227 LLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIG 306 (358)
T ss_pred HHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEEC
Confidence 999999887533211100 112234444444444444444444444444444444444444444444444
Q ss_pred CCcEEeCeEECCCCEECC
Q 012817 391 SNVKVVNSVVMNHVTIGD 408 (456)
Q Consensus 391 ~~~~i~~s~i~~~~~ig~ 408 (456)
+++.|.+|+|+.+|+||.
T Consensus 307 ~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 307 HGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CCCEEeeeEEcCCcEECC
Confidence 444444444444444444
No 5
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.5e-47 Score=382.27 Aligned_cols=349 Identities=22% Similarity=0.354 Sum_probs=269.3
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc---cCcc
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY---VDRL 77 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~---~~~~ 77 (456)
+|+|||||||.|+||+|+ |..+||||+|++|| |||+|+|++|.++|+++++|++++. .+.+.+++.+.. .+..
T Consensus 3 ~m~avILAaG~GtRl~pl-T~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~ 79 (380)
T PRK05293 3 EMLAMILAGGQGTRLGKL-TKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQ--PLELNNHIGIGSPWDLDRI 79 (380)
T ss_pred cEEEEEECCCCCcccchh-hcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCC--HHHHHHHHhCCCcccccCC
Confidence 499999999999999999 99999999999999 8999999999999999999999865 346677664321 1110
Q ss_pred --ceEE----EEccC---CcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCC
Q 012817 78 --HVEV----ATVPE---DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL 145 (456)
Q Consensus 78 --~i~~----~~~~~---~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~ 145 (456)
.+.+ ..+.+ +.||+++++.+.+.+. +++|+|++||.+++.++.++++.|++.++++++++...+..+
T Consensus 80 ~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~- 158 (380)
T PRK05293 80 NGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE- 158 (380)
T ss_pred CCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhh-
Confidence 1222 22222 3799999999988875 367999999999999999999999998898888876654322
Q ss_pred ccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817 146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (456)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~ 225 (456)
+..|+++.+|++++ +..+.+ |+. ...++++++|+|+|++++|..+++
T Consensus 159 --------------~~~yG~v~~d~~g~-V~~~~e-----Kp~-------------~~~~~~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 159 --------------ASRFGIMNTDENMR-IVEFEE-----KPK-------------NPKSNLASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred --------------ccccCEEEECCCCc-EEEEEe-----CCC-------------CCCcceeeeEEEEEcHHHHHHHHH
Confidence 56789999987765 444543 210 112567899999999999977664
Q ss_pred cC----ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCccee
Q 012817 226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 301 (456)
Q Consensus 226 ~~----~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (456)
+. .+..++.+|+++++++++ .+
T Consensus 206 ~~~~~~~~~~~~~~d~i~~l~~~~------------------------------------------------------~~ 231 (380)
T PRK05293 206 EDEKNPNSSHDFGKNVIPLYLEEG------------------------------------------------------EK 231 (380)
T ss_pred HHhhcCCchhhhHHHHHHHHhhcC------------------------------------------------------Ce
Confidence 31 223456678899887643 23
Q ss_pred eEEEEecCcchhhcccCHHHHHHHhHhhhccccccCC---CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeE
Q 012817 302 CCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSG---YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV 378 (456)
Q Consensus 302 ~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~---~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i 378 (456)
+.+| ...+||.+++++++|++++++++........ ...+.....+.+.+.|++++.| .++.|+++|.|+. .+
T Consensus 232 v~~~--~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v 306 (380)
T PRK05293 232 LYAY--PFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--TV 306 (380)
T ss_pred EEEE--EeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--ee
Confidence 3445 4467999999999999999988765433211 0111123345566777777777 5778888888863 56
Q ss_pred eeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC-----eEECCCCEECCCcEE
Q 012817 379 KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-----CQVGQGYVVSAGCEY 446 (456)
Q Consensus 379 ~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~-----~~i~~~~~v~~~~~~ 446 (456)
.+|+||++|.||++|+|.+|+|+++|.||++|.|.+|+|++++.|++++.+.+ .+||+++.|++++.+
T Consensus 307 ~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 307 EHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred cceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence 78999999999999999999999999999999999999999999999999976 889999999998876
No 6
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-46 Score=368.42 Aligned_cols=376 Identities=27% Similarity=0.490 Sum_probs=308.6
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhh--hccCc-cce
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA--AYVDR-LHV 79 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~--~~~~~-~~i 79 (456)
+|||++|.-..+||+|+ |...|+.|||++|.|||+|+|++|..+|+.+|+|+|+.+ +.++.+|+.. |.... +.+
T Consensus 25 LqAIllaDsf~trF~Pl-t~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~--~~qi~e~i~~sew~~~~~~~v 101 (673)
T KOG1461|consen 25 LQAILLADSFETRFRPL-TLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAH--AAQIIEYIEKSEWYLPMSFIV 101 (673)
T ss_pred eEEEEEeccchhccccc-ccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEeccc--HHHHHHHHhhccccccccceE
Confidence 69999999999999999 999999999999999999999999999999999999855 3466666654 33221 123
Q ss_pred EEEEccCCcChHHHHHHHH-hcCCCCcEEEEcCCcccCCChhHHHHHHHhc-----CceEEEEEeecccCCCccCCCCCC
Q 012817 80 EVATVPEDVGTAGALRAIA-HHLTAKDVLVVSGDLVSDVPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGSSGA 153 (456)
Q Consensus 80 ~~~~~~~~~gt~~al~~~~-~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~-----~a~~t~~~~~~~~~~~~~~~~~~~ 153 (456)
..+...+.+..++++|..- +.+...+|++++||.+++.+|.+++++|+.+ ++.||+++.+...
T Consensus 102 ~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st----------- 170 (673)
T KOG1461|consen 102 VTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESST----------- 170 (673)
T ss_pred EEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEecccc-----------
Confidence 3333334588899999884 5566789999999999999999999999664 5668887766420
Q ss_pred cccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcccccc
Q 012817 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSL 233 (456)
Q Consensus 154 ~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~ 233 (456)
+.....-++.+|+.+..++|+.+...-+....++..++...+.+.+++++.+++|-+|++.++. ++.+|++|+ .
T Consensus 171 ----~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~s-LF~dNFDyq-~ 244 (673)
T KOG1461|consen 171 ----RETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLS-LFTDNFDYQ-T 244 (673)
T ss_pred ----ccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHH-Hhhhcccce-e
Confidence 0122345778999998899997533334457788889999999999999999999999999997 557788898 8
Q ss_pred ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchh
Q 012817 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 313 (456)
Q Consensus 234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~ 313 (456)
+.||+.-++-+.+. +.+++.++.+...|.
T Consensus 245 r~DfV~GvL~~dil---------------------------------------------------g~kI~~~~~~~~~yA 273 (673)
T KOG1461|consen 245 RDDFVRGVLVDDIL---------------------------------------------------GYKIHVHVLSSIDYA 273 (673)
T ss_pred hhhhhhhhhhhhhc---------------------------------------------------CCeEEEEEcChhhhh
Confidence 88998877543221 156777777777799
Q ss_pred hcccCHHHHHHHhHhhhccccc-------cCC---CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEE
Q 012817 314 VRLNSIQAFMDINRDVIGEANH-------LSG---YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI 383 (456)
Q Consensus 314 ~~i~~~~~y~~~~~~~l~~~~~-------~~~---~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~I 383 (456)
.++.++++|..+++++|.+-.. +.+ +.+...+.+-+|.+++...+.++.++.||.++.||.++.|.||+|
T Consensus 274 ~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVI 353 (673)
T KOG1461|consen 274 ARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVI 353 (673)
T ss_pred hhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEecccccccCCCeeeccee
Confidence 9999999999999999875432 111 223345677789999999999999999999999999999999999
Q ss_pred CCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcCC
Q 012817 384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGE 449 (456)
Q Consensus 384 g~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~~ 449 (456)
|.||.||.+++|.+|.||.+|+||+||.|++|+|+++|.|++++.+ ++|+||.+++|+++.++.-.
T Consensus 354 G~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 354 GANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred cCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence 9999999999999999999999999999999999999999999999 58999999999998876654
No 7
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=7e-46 Score=372.17 Aligned_cols=353 Identities=21% Similarity=0.317 Sum_probs=254.0
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-cCccce
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRLHV 79 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~~~~i 79 (456)
+|+|||||||.|+||+|| |..+||||+|++|| |||+|+|++|.++|+++++|++++. .+.+.+|+.+.+ ..++..
T Consensus 5 ~~~avILAaG~GtRl~PL-T~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~ 81 (407)
T PRK00844 5 KVLAIVLAGGEGKRLMPL-TADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYK--SHSLDRHISQTWRLSGLLG 81 (407)
T ss_pred ceEEEEECCCCCCccchh-hcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHHhCcCccccCC
Confidence 489999999999999999 99999999999999 9999999999999999999999866 346666664321 222222
Q ss_pred EEEEc-c--C------CcChHHHHHHHHhcCCC---CcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCcc
Q 012817 80 EVATV-P--E------DVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSE 147 (456)
Q Consensus 80 ~~~~~-~--~------~~gt~~al~~~~~~l~~---~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~ 147 (456)
.++.. + + +.||+++++.+.+.+.+ ++|++++||.+++.++.+++++|++.++++|+++...+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~--- 158 (407)
T PRK00844 82 NYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREE--- 158 (407)
T ss_pred CeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHH---
Confidence 33321 1 1 48999999999888743 34999999999999999999999999999988887654222
Q ss_pred CCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhc-
Q 012817 148 AGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ- 226 (456)
Q Consensus 148 ~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~- 226 (456)
+..|+++.+|++++ +..+.+++...+.. + ....+.++++|+|+|++++|..++++
T Consensus 159 ------------~~~~Gvv~~d~~g~-v~~~~eKp~~~~~~--~---------~~~~~~~~~~Giyi~~~~~l~~~l~~~ 214 (407)
T PRK00844 159 ------------ASAFGVIEVDPDGR-IRGFLEKPADPPGL--P---------DDPDEALASMGNYVFTTDALVDALRRD 214 (407)
T ss_pred ------------cccCCEEEECCCCC-EEEEEECCCCcccc--c---------CCCCCcEEEeEEEEEeHHHHHHHHHHh
Confidence 56799999998776 44554432111100 0 01135689999999999998665553
Q ss_pred ---CccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeE
Q 012817 227 ---KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC 303 (456)
Q Consensus 227 ---~~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (456)
+....++.+|++|.+++++......... ... .|..
T Consensus 215 ~~~~~~~~~~~~dii~~l~~~~~v~~~~~~~------------------------------~~~---~g~n--------- 252 (407)
T PRK00844 215 AADEDSSHDMGGDIIPRLVERGRAYVYDFST------------------------------NEV---PGAT--------- 252 (407)
T ss_pred hcCCcccccchhhHHHHHhccCeEEEEEccc------------------------------ccc---cccc---------
Confidence 2234567789999998754221110000 000 0000
Q ss_pred EEEecCcchhhcccCHHHHHHHhHhhhccccccCCCc----ccCCCceeCCCCEe-CCC--cEECCCCEECCCCEECCCC
Q 012817 304 VYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYN----FSAQNNIIHPSAEL-GSK--TTVGPHCMLGEGSQMGDKC 376 (456)
Q Consensus 304 ~yi~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~~----~~~~~~~i~~~~~i-~~~--~~i~~~~~i~~~~~I~~~~ 376 (456)
....+||.+++++++|+++++++|.+......+. ..+... ..|++.+ +.. ..+.+++.|+++|.|+ ++
T Consensus 253 ---~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~ 327 (407)
T PRK00844 253 ---ERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSP-NLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GA 327 (407)
T ss_pred ---cCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCC-CCCCceEecCCCccceEEeCEEcCCCEEC-Ce
Confidence 0236899999999999999999997544322110 011111 1233332 222 1244678999999998 89
Q ss_pred eEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC
Q 012817 377 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD 431 (456)
Q Consensus 377 ~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~ 431 (456)
.|.+|+||++|.|+++|+|.+|+|+++|+||++|.|.+|+|++++.|+++++|.+
T Consensus 328 ~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 328 TVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred eeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 9999999999999999999999999999999999999999999999998887754
No 8
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=6.7e-46 Score=373.97 Aligned_cols=367 Identities=23% Similarity=0.368 Sum_probs=268.1
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-cCcc--
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRL-- 77 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~~~-- 77 (456)
+++|||||||.|+||+|| |..+||||+|++|| |||+|+|++|.++|+++++|++++. .+.+.+++.+.+ ....
T Consensus 3 ~~~AVILAaG~GtRL~PL-T~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~--~~~i~~~l~~~~~~~~~~~ 79 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPL-TKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFN--SASLNRHISQTYNFDGFSG 79 (429)
T ss_pred cEEEEEECCCCCCcchhh-hcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCC--HHHHHHHHhcCcCccccCC
Confidence 579999999999999999 89999999999999 9999999999999999999999865 335666664321 1111
Q ss_pred c-eEEEE--c--cC---CcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCc
Q 012817 78 H-VEVAT--V--PE---DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLS 146 (456)
Q Consensus 78 ~-i~~~~--~--~~---~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~ 146 (456)
. +.+.. + .+ .+||+++++.+.+.+. +++|+|++||.+++.++.++++.|++.++++|+++.+.+..+
T Consensus 80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~-- 157 (429)
T PRK02862 80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKD-- 157 (429)
T ss_pred CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhh--
Confidence 1 12221 1 11 2799999999988774 367999999999999999999999999999998886654222
Q ss_pred cCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccc--cccccchHHHhhcce-eEEecCCccceEEeechHHHHHH
Q 012817 147 EAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELE--KDTRIRKSILRAVGQ-MDIRADLMDAHMYAFNRSVLQEV 223 (456)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~--k~~~~~~~~~~~~~~-~~~~~~~~~~giYi~~~~vl~~~ 223 (456)
+..||++.+|+++++ ..+.+++..+ +...++..++...+. .....+++++|+|+|++++|..+
T Consensus 158 -------------~~~yG~i~~d~~g~V-~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~ 223 (429)
T PRK02862 158 -------------ASGFGLMKTDDDGRI-TEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDL 223 (429)
T ss_pred -------------cccceEEEECCCCcE-EEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHH
Confidence 557999999987764 4555433211 111122222221111 11234588999999999999877
Q ss_pred HhcCccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeE
Q 012817 224 LDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC 303 (456)
Q Consensus 224 ~~~~~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (456)
+.+.+++.++.+|++|++++. .++.
T Consensus 224 l~~~~~~~~~~~dil~~l~~~-------------------------------------------------------~~v~ 248 (429)
T PRK02862 224 LNKNPEYTDFGKEIIPEAIRD-------------------------------------------------------YKVQ 248 (429)
T ss_pred HHHCCChhhhHHHHHHHHhcc-------------------------------------------------------CcEE
Confidence 766544567778999987542 1234
Q ss_pred EEEecCcchhhcccCHHHHHHHhHhhh-ccccccCCCc---ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe
Q 012817 304 VYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLSGYN---FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK 379 (456)
Q Consensus 304 ~yi~~~~~~~~~i~~~~~y~~~~~~~l-~~~~~~~~~~---~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~ 379 (456)
+| ...+||.+++++++|++++++++ ...+....+. .+.....+.|.+.+. ++.+ .+++||++|.| +++.|+
T Consensus 249 ~~--~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~-~~~~-~~~~ig~~~~i-~~~~i~ 323 (429)
T PRK02862 249 SY--LFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLL-DATI-TESIIAEGCII-KNCSIH 323 (429)
T ss_pred EE--EeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCcccc-ccEE-EeCEECCCCEE-CCcEEE
Confidence 45 45789999999999999999988 3222221110 011123345555553 5566 36899999999 889999
Q ss_pred eeEECCCCEECCCcEEeCeEECC-------------------CCEECCCcEEcCeEECCCCEECCCcEec----------
Q 012817 380 RSVIGRHCRIGSNVKVVNSVVMN-------------------HVTIGDGCSIQGSVICSNAQLQERVALK---------- 430 (456)
Q Consensus 380 ~s~Ig~~~~ig~~~~i~~s~i~~-------------------~~~ig~~~~i~~~ii~~~~~I~~~~~i~---------- 430 (456)
+|+||++|.||++|.|.+|+|++ ++.||++|.|.+|+|+++|.||+++.|.
T Consensus 324 ~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~ 403 (429)
T PRK02862 324 HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADR 403 (429)
T ss_pred EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCCCcccccc
Confidence 99999999999999999999987 6999999999999999999999999984
Q ss_pred ---CeEECCC-CEECCCcEEc
Q 012817 431 ---DCQVGQG-YVVSAGCEYK 447 (456)
Q Consensus 431 ---~~~i~~~-~~v~~~~~~~ 447 (456)
+++|++| ++|+.++.+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~ 424 (429)
T PRK02862 404 EDQGFYIRDGIVVVVKNAVIP 424 (429)
T ss_pred cccceEeeCCEEEEcCCcCCC
Confidence 3455555 5566655544
No 9
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=4e-45 Score=369.36 Aligned_cols=363 Identities=20% Similarity=0.365 Sum_probs=261.6
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-cC-c--
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VD-R-- 76 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~-~-- 76 (456)
+|+|||||||+|+||+|| |..+||||+|++|| |||+|+|++|.++|+++++|++++.. +.+.+|+.+.+ .+ .
T Consensus 3 ~~~aIIlA~G~gtRl~Pl-T~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~--~~i~~~l~~~~~~~~~~~ 79 (436)
T PLN02241 3 SVAAIILGGGAGTRLFPL-TKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNS--ASLNRHLSRAYNFGNGGN 79 (436)
T ss_pred ceEEEEEeCCCCCcchhh-hcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCH--HHHHHHHhccCCCCCCcc
Confidence 599999999999999999 99999999999997 99999999999999999999998653 45666665422 11 0
Q ss_pred ---cceEEEE--cc-----CCcChHHHHHHHHhcCC------CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeec
Q 012817 77 ---LHVEVAT--VP-----EDVGTAGALRAIAHHLT------AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSV 140 (456)
Q Consensus 77 ---~~i~~~~--~~-----~~~gt~~al~~~~~~l~------~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~ 140 (456)
..+.+.. +. .+.|++++++.++..+. +++|++++||.+++.++.+++++|++.++++|+++.+.
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v 159 (436)
T PLN02241 80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPV 159 (436)
T ss_pred cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEec
Confidence 0122221 21 25799999988765442 47899999999999999999999999999999988776
Q ss_pred ccCCCccCCCCCCcccCCCCCcccEEEecCCCcEEEEeeccccccc--ccccchHHHhhcc-eeEEecCCccceEEeech
Q 012817 141 PVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVG-QMDIRADLMDAHMYAFNR 217 (456)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k--~~~~~~~~~~~~~-~~~~~~~~~~~giYi~~~ 217 (456)
+.++ +..|+++.+|++++ +..+.+++..++ ...++..++...+ .....++++++|+|+|++
T Consensus 160 ~~~~---------------~~~ygvv~~d~~~~-v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~ 223 (436)
T PLN02241 160 DESR---------------ASDFGLMKIDDTGR-IIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKK 223 (436)
T ss_pred chhh---------------cCcceEEEECCCCC-EEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEH
Confidence 5322 56799999987766 555654332111 0111111111000 111124789999999999
Q ss_pred HHHHHHHhcCc-cccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCC
Q 012817 218 SVLQEVLDQKD-KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPV 296 (456)
Q Consensus 218 ~vl~~~~~~~~-~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (456)
++|..++++.. ...++.+|+++.+++++
T Consensus 224 ~~l~~ll~~~~~~~~~~~~dil~~l~~~g--------------------------------------------------- 252 (436)
T PLN02241 224 DVLLKLLRWRFPTANDFGSEIIPGAIKEG--------------------------------------------------- 252 (436)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHhhcC---------------------------------------------------
Confidence 99976765432 22356678888887543
Q ss_pred CcceeeEEEEecCcchhhcccCHHHHHHHhHhhhccccccCCC----cccCCCceeCCCCEeCCCcEECCCCEECCCCEE
Q 012817 297 RRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGY----NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQM 372 (456)
Q Consensus 297 ~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~----~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I 372 (456)
.++++| ...+||.+++++++|++++++++...+....+ ..... ....|++.+ .++.+.+ ++|+++|.|
T Consensus 253 ---~~v~~~--~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~-~~~~~~~~~-~~~~i~~-s~I~~~~~I 324 (436)
T PLN02241 253 ---YNVQAY--LFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTS-PRFLPPSKI-EDCRITD-SIISHGCFL 324 (436)
T ss_pred ---CeEEEE--eeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCccccc-CCCCCCcEe-cCCeEEE-eEEcCCcEE
Confidence 234455 45689999999999999999998754322110 11111 222255555 3555644 899999999
Q ss_pred CCCCeEeeeEECCCCEECCCcEEeCeEECCC-------------------CEECCCcEEcCeEECCCCEECCCcEec---
Q 012817 373 GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH-------------------VTIGDGCSIQGSVICSNAQLQERVALK--- 430 (456)
Q Consensus 373 ~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~-------------------~~ig~~~~i~~~ii~~~~~I~~~~~i~--- 430 (456)
+ +|.|++|+|+++|.||++|+|.+|++++. ++||++|.+++++|+++|.||+++.+.
T Consensus 325 ~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~ 403 (436)
T PLN02241 325 R-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKD 403 (436)
T ss_pred c-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEEeccc
Confidence 9 99999999999999999999999998773 389999999999999999999999884
Q ss_pred ----CeEECCCCEECCC
Q 012817 431 ----DCQVGQGYVVSAG 443 (456)
Q Consensus 431 ----~~~i~~~~~v~~~ 443 (456)
..++|+++.|++|
T Consensus 404 ~~~~~~~~~~~~~~~~~ 420 (436)
T PLN02241 404 GVQEADREEEGYYIRSG 420 (436)
T ss_pred ccCCccccccccEEeCC
Confidence 1244555555555
No 10
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4.7e-44 Score=360.15 Aligned_cols=342 Identities=19% Similarity=0.283 Sum_probs=250.1
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcc-hHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-cCcc--
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRP-VLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRL-- 77 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkp-li~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~~~-- 77 (456)
+++|||||||.|+||+|+ |..+||||+|++|+| ||+|+|++|.++|+++++|++++.. +.+.+++.+.+ ..+.
T Consensus 15 ~~~aVILAaG~GtRl~pL-T~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~--~~i~~~~~~~~~~~~~~~ 91 (425)
T PRK00725 15 DTLALILAGGRGSRLKEL-TDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKA--HSLIRHIQRGWSFFREEL 91 (425)
T ss_pred ceEEEEECCCCCCcchhh-hCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCH--HHHHHHHHhhhcccccCC
Confidence 578999999999999999 889999999999997 9999999999999999999998653 35666664421 1010
Q ss_pred --ceEEEE-------ccCCcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCC
Q 012817 78 --HVEVAT-------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL 145 (456)
Q Consensus 78 --~i~~~~-------~~~~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~ 145 (456)
.+.+.. ++.+.||+++++.+.+.+. +++|+|++||.+++.++.+++++|.+.++++|+++.+.+..+
T Consensus 92 ~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~- 170 (425)
T PRK00725 92 GEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREE- 170 (425)
T ss_pred CCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhh-
Confidence 111111 1224799999999988775 357999999999999999999999999999998887654222
Q ss_pred ccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817 146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (456)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~ 225 (456)
+..||++.+|++++ +..+.|++..+.. .+ ....+.++++|+|+|++++|..++.
T Consensus 171 --------------~~~yG~v~~d~~~~-V~~~~EKp~~~~~--~~---------~~~~~~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 171 --------------ASAFGVMAVDENDR-ITAFVEKPANPPA--MP---------GDPDKSLASMGIYVFNADYLYELLE 224 (425)
T ss_pred --------------cccceEEEECCCCC-EEEEEECCCCccc--cc---------cCccceEEEeeEEEEeHHHHHHHHH
Confidence 56799999998766 4555543211100 00 0112568999999999999866654
Q ss_pred c---C-ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCccee
Q 012817 226 Q---K-DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 301 (456)
Q Consensus 226 ~---~-~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (456)
+ . ....++.+|++|++++++-.
T Consensus 225 ~~~~~~~~~~~~~~dii~~l~~~~~v------------------------------------------------------ 250 (425)
T PRK00725 225 EDAEDPNSSHDFGKDIIPKIVEEGKV------------------------------------------------------ 250 (425)
T ss_pred HhhcCCCccchhhHHHHHHHhccCcE------------------------------------------------------
Confidence 3 1 12346678999998865421
Q ss_pred eEEEEe---------cCcchhhcccCHHHHHHHhHhhhccccccCCCc----ccCCCceeCCCCEe---CCCc-EECCCC
Q 012817 302 CCVYIA---------SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYN----FSAQNNIIHPSAEL---GSKT-TVGPHC 364 (456)
Q Consensus 302 ~~~yi~---------~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~~----~~~~~~~i~~~~~i---~~~~-~i~~~~ 364 (456)
.+|.. ...+||.+++++++|++++++++........+. ..+.. ...|++.+ +.++ .+..++
T Consensus 251 -~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~-~~~~~~~~~~~~~~~~~~~~~s 328 (425)
T PRK00725 251 -YAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQ-EQLPPAKFVFDRSGRRGMAINS 328 (425)
T ss_pred -EEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCC-CCCCCCeEeccCCCCcceEEeC
Confidence 11211 235899999999999999999986543222110 00111 12233332 1121 123589
Q ss_pred EECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEec
Q 012817 365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK 430 (456)
Q Consensus 365 ~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~ 430 (456)
+|+++|.| ++|.|++|+|+++|.||++|+|.+|+||++|.||++|.|.+|+|+++|.|+++++|.
T Consensus 329 ~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~ 393 (425)
T PRK00725 329 LVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIG 393 (425)
T ss_pred EEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEEC
Confidence 99999999 789999999999999999999999999999999999999999999999999887775
No 11
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-44 Score=320.14 Aligned_cols=364 Identities=20% Similarity=0.381 Sum_probs=267.7
Q ss_pred CCceEEEEecC--CCCCCcCCCCCCCcccccccCCcchHHHHHHHHHH-CCCCEEEEEecCchhhHHHHhhh---hhhcc
Q 012817 1 MDFQVVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWI---SAAYV 74 (456)
Q Consensus 1 m~~~aiIlagG--~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~-~gi~~v~iv~~~~~~~~~i~~~~---~~~~~ 74 (456)
|+++||||.|| +|+||+|| ..+.||||+|++|+|||+|.|+.+++ .|..+++++.-+++. .+..|+ ++.+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPL-Sf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~--~f~~fis~~~~e~- 76 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPL-SFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEER--VFTDFISAIQQEF- 76 (407)
T ss_pred CceEEEEEecCCCCCcccccc-ccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccch--HHHHHHHHHHhhc-
Confidence 88999999998 79999999 89999999999999999999999987 579999999765532 344443 2222
Q ss_pred CccceEEEEccCCcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCC
Q 012817 75 DRLHVEVATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSS 151 (456)
Q Consensus 75 ~~~~i~~~~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~ 151 (456)
+..++|..++.+.||++.|+...+++- .+.+++++||..++.++.+|++.|++.++.++++..+...++
T Consensus 77 -~~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~------- 148 (407)
T KOG1460|consen 77 -KVPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQ------- 148 (407)
T ss_pred -ccchhhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhH-------
Confidence 345777767778999999998877652 456999999999999999999999999999999998876433
Q ss_pred CCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcccc
Q 012817 152 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQ 231 (456)
Q Consensus 152 ~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~ 231 (456)
..+||.+..|+.+..++|+++ |+- +.-|+.+|+|+|+|++++|..+-+- .
T Consensus 149 --------asnfG~lV~dP~t~evlHYve-----KPs-------------TfvSd~InCGvYlF~~eif~~i~~v----~ 198 (407)
T KOG1460|consen 149 --------ASNFGCLVEDPSTGEVLHYVE-----KPS-------------TFVSDIINCGVYLFTPEIFNAIAEV----Y 198 (407)
T ss_pred --------hhccCeeeecCCcCceEEeec-----Ccc-------------hhhhcccceeEEEecHHHHHHHHHH----H
Confidence 567999999998888999984 321 4468999999999999999766321 1
Q ss_pred ccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcc
Q 012817 232 SLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK 311 (456)
Q Consensus 232 s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~ 311 (456)
..++|.+... + ++. .+.+.+. ++ -.+..+. +.+ +....++++| ...+
T Consensus 199 ~q~~~~~~~~-~-~~~---~l~~g~~----d~----------------irLeqDv-lsp-----Lag~k~lY~y--~t~~ 245 (407)
T KOG1460|consen 199 RQRQDLLEVE-K-DLP---LLQPGPA----DF----------------IRLEQDV-LSP-----LAGSKQLYAY--ETTD 245 (407)
T ss_pred HHHHhhhhhh-h-ccc---ccCCCcc----ce----------------EEeechh-hhh-----hcCCCceEEE--eccc
Confidence 1112211110 0 000 0000000 00 0000000 111 0112445555 6789
Q ss_pred hhhcccCHHHHHHHhHhhhcc--c---ccc---CC-CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeE
Q 012817 312 YCVRLNSIQAFMDINRDVIGE--A---NHL---SG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV 382 (456)
Q Consensus 312 ~~~~i~~~~~y~~~~~~~l~~--~---~~~---~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~ 382 (456)
||..+.+..+-..+++-+|.+ . ..+ .+ ..++-.+++|+|+|.+++.+.||+|+.||+++.||++++|++|+
T Consensus 246 fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sI 325 (407)
T KOG1460|consen 246 FWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESI 325 (407)
T ss_pred HHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeee
Confidence 999999887766666665541 1 011 12 23556789999999999999999999999999999999999999
Q ss_pred ECCCCEECCCcEEeCeEECCCCEECCCcEEcC--------------eEECCCCEECCCcEecCeEECCCCE
Q 012817 383 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG--------------SVICSNAQLQERVALKDCQVGQGYV 439 (456)
Q Consensus 383 Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~--------------~ii~~~~~I~~~~~i~~~~i~~~~~ 439 (456)
|-++|.|.+|+++-+|+|+.++.||..+++++ +|.|..|.+++.+.+.+|++-++-.
T Consensus 326 Il~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp~k~ 396 (407)
T KOG1460|consen 326 ILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLPNKE 396 (407)
T ss_pred eccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEecCCc
Confidence 99999999999999999999999999999974 6677777777777766666555443
No 12
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=2.8e-42 Score=340.85 Aligned_cols=338 Identities=20% Similarity=0.313 Sum_probs=230.9
Q ss_pred eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (456)
Q Consensus 4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 83 (456)
+|||||||.|+||+|+ |..+||||+|++|||||+|+|+++.++|++++++++++.. .+.+.+++.+.......+.++.
T Consensus 1 kaiIlAaG~gtRl~pl-t~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 78 (353)
T TIGR01208 1 KALILAAGKGTRLRPL-TFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVT-GEEIKEIVGEGERFGAKITYIV 78 (353)
T ss_pred CEEEECCcCcCccCcc-ccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCC-HHHHHHHHhcccccCceEEEEE
Confidence 6899999999999999 9999999999999999999999999999999999998622 3466666654222223345555
Q ss_pred ccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcc
Q 012817 84 VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY 163 (456)
Q Consensus 84 ~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (456)
+....|++++++.+++++.++++++++||.+++.++.++++.|++.++++++++.+.+ + +..|
T Consensus 79 ~~~~~G~~~al~~a~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~--~---------------~~~~ 141 (353)
T TIGR01208 79 QGEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR--D---------------PTAF 141 (353)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC--C---------------hhhC
Confidence 5567899999999999887678999999999999999999999999999888876543 2 4568
Q ss_pred cEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc---cccccccchhHH
Q 012817 164 NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVLPY 240 (456)
Q Consensus 164 ~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~---~~~s~~~d~l~~ 240 (456)
+++.+|+++ .+..+.+ |+. ...++++++|+|+|++.+++.+ .+.. ..+....|+++.
T Consensus 142 g~~~~~~~~-~v~~~~e-----kp~-------------~~~~~~~~~Giy~~~~~l~~~l-~~~~~~~~~e~~l~d~l~~ 201 (353)
T TIGR01208 142 GVAVLEDGK-RILKLVE-----KPK-------------EPPSNLAVVGLYMFRPLIFEAI-KNIKPSWRGELEITDAIQW 201 (353)
T ss_pred eEEEEcCCC-cEEEEEE-----CCC-------------CCCccceEEEEEEECHHHHHHH-HhcCCCCCCcEEHHHHHHH
Confidence 888886444 3555543 211 1135678999999999877644 3211 111123577877
Q ss_pred HhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHH
Q 012817 241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ 320 (456)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~ 320 (456)
+++++ .++.+| ...+||.++++++
T Consensus 202 l~~~g------------------------------------------------------~~v~~~--~~~g~w~digt~~ 225 (353)
T TIGR01208 202 LIEKG------------------------------------------------------YKVGGS--KVTGWWKDTGKPE 225 (353)
T ss_pred HHHcC------------------------------------------------------CeEEEE--EeCcEEEeCCCHH
Confidence 76543 234455 5578999999999
Q ss_pred HHHHHhHhhhcccc-ccCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEE----
Q 012817 321 AFMDINRDVIGEAN-HLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV---- 395 (456)
Q Consensus 321 ~y~~~~~~~l~~~~-~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i---- 395 (456)
+|+++++.++.+.. .+.+ +.....+.+.+.|++++.| .++.|.+.|.||++|.|.+++|+++|.||++|.|
T Consensus 226 dl~~a~~~ll~~~~~~~~~---i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~ 301 (353)
T TIGR01208 226 DLLDANRLILDEVEREVQG---VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAE 301 (353)
T ss_pred HHHHHHHHHHhhcccccCC---cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeE
Confidence 99999999987421 1111 1223344444555555555 4444444444555554444444444444444443
Q ss_pred -eCeEECCCCEECCC-cEEcCeEECCCCEECCCcEec---CeEECCCCEE
Q 012817 396 -VNSVVMNHVTIGDG-CSIQGSVICSNAQLQERVALK---DCQVGQGYVV 440 (456)
Q Consensus 396 -~~s~i~~~~~ig~~-~~i~~~ii~~~~~I~~~~~i~---~~~i~~~~~v 440 (456)
.+|+|++++.|+.+ +.+.+++|++++.|++++.+. +.++|..+.|
T Consensus 302 i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~ 351 (353)
T TIGR01208 302 VEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQV 351 (353)
T ss_pred EEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCcee
Confidence 46666666766666 366677777777777776664 2455555554
No 13
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=1.2e-42 Score=344.83 Aligned_cols=335 Identities=24% Similarity=0.365 Sum_probs=216.4
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhcc-Cc---cce
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR---LHV 79 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~-~~---~~i 79 (456)
|||||||.|+||+|+ |...||||+|++|+ |||+|++++|.++|+++++|++++.. +.+..++.+.+. .+ ..+
T Consensus 1 aiILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPL-TKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKS--HSLNRHIQRGWDFDGFIDGFV 77 (361)
T ss_pred CEEeCCCCCCccchh-hhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccCh--HHHHHHHHhccCccCccCCCE
Confidence 699999999999999 99999999999999 89999999999999999999998653 356666653221 11 123
Q ss_pred EEEE--c--c---CCcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCC
Q 012817 80 EVAT--V--P---EDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAG 149 (456)
Q Consensus 80 ~~~~--~--~---~~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~ 149 (456)
++.. + . ...|++++++.+++.+. +++|++++||.+++.++.++++.|++.++++++++...+..+
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~----- 152 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKE----- 152 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHh-----
Confidence 3321 1 1 13799999998877764 356999999999999999999999988888888877654222
Q ss_pred CCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC--
Q 012817 150 SSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-- 227 (456)
Q Consensus 150 ~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~-- 227 (456)
+..|+++.+|++++ +..+.+++...+. . .. .....++++|+|+|++++|..++.+.
T Consensus 153 ----------~~~~g~v~~d~~~~-v~~~~ekp~~~~~-----~--~~----~~~~~~~~~Giyi~~~~~l~~~l~~~~~ 210 (361)
T TIGR02091 153 ----------ASRFGVMQVDEDGR-IVDFEEKPANPPS-----I--PG----MPDFALASMGIYIFDKDVLKELLEEDAD 210 (361)
T ss_pred ----------cccccEEEECCCCC-EEEEEECCCCccc-----c--cc----cccccEEeeeEEEEcHHHHHHHHHHHhh
Confidence 55789999987766 4455432110000 0 00 00123789999999999986565431
Q ss_pred --ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEE
Q 012817 228 --DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVY 305 (456)
Q Consensus 228 --~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 305 (456)
....++.+|+++.+++++ ++++|
T Consensus 211 ~~~~~~~~~~d~l~~l~~~~-------------------------------------------------------~v~~~ 235 (361)
T TIGR02091 211 DPESSHDFGKDIIPRALEEG-------------------------------------------------------SVQAY 235 (361)
T ss_pred cCCcccccHHHHHHHHhhcC-------------------------------------------------------ceEEE
Confidence 123456678888887532 23445
Q ss_pred EecCcchhhcccCHHHHHHHhHhhhccccccCCC----cccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeee
Q 012817 306 IASNSKYCVRLNSIQAFMDINRDVIGEANHLSGY----NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS 381 (456)
Q Consensus 306 i~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~----~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s 381 (456)
...+||.+++++++|++++++++......... ...+....+.|++.+++++.+ +++.||++|.|+++ +|.+|
T Consensus 236 --~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s 311 (361)
T TIGR02091 236 --LFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHS 311 (361)
T ss_pred --eeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEEcc
Confidence 33589999999999999999998754322110 000112233444444444433 34455555555543 44455
Q ss_pred EECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcE
Q 012817 382 VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVA 428 (456)
Q Consensus 382 ~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~ 428 (456)
+|+++|.|+++|.|.+|+|++++.||+++.|.+|+|++++.|++++.
T Consensus 312 ~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~ 358 (361)
T TIGR02091 312 VLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVV 358 (361)
T ss_pred EECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCE
Confidence 55555555555555555555555555555555555555544444433
No 14
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=5e-43 Score=348.22 Aligned_cols=339 Identities=18% Similarity=0.289 Sum_probs=217.7
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccce-
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV- 79 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i- 79 (456)
+|+|||||||+|+||+|| |..+||||+|++|| |||+|+|++|.++|+++++|++++... +++++|+.+........
T Consensus 2 ~~~avila~g~gtRL~PL-T~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~-~~I~~~l~~~~~~~~~~~ 79 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPL-TKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKER-QSLFDHLGSGREWDLHRK 79 (369)
T ss_pred cEEEEEECCCCCcccccc-ccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcH-HHHHHHHhCCCCCCcccc
Confidence 589999999999999999 99999999999999 999999999999999999999987521 26777775421111111
Q ss_pred -----EEEEccCC-c--ChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccC
Q 012817 80 -----EVATVPED-V--GTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEA 148 (456)
Q Consensus 80 -----~~~~~~~~-~--gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~ 148 (456)
.+..++.. . |++++++.+.+.+. +++|++++||.+++.++.+++++|++.++++|+++.+++..+
T Consensus 80 ~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~---- 155 (369)
T TIGR02092 80 RDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPAD---- 155 (369)
T ss_pred cCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHH----
Confidence 12233333 3 55667777777663 467999999999999999999999999999999887654212
Q ss_pred CCCCCcccCCCCCcc-cEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC
Q 012817 149 GSSGAKDKTKKPGRY-NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK 227 (456)
Q Consensus 149 ~~~~~~~~~~~~~~~-~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~ 227 (456)
+..| +++..|++++ +..+.+ ++.. .....+++|+|+|++++|..++++.
T Consensus 156 -----------~~~~g~vv~~~~~g~-v~~~~~----~~~~--------------~~~~~~~~Giyi~~~~~l~~~l~~~ 205 (369)
T TIGR02092 156 -----------ASEYDTILRFDESGK-VKSIGQ----NLNP--------------EEEENISLDIYIVSTDLLIELLYEC 205 (369)
T ss_pred -----------ccccCcEEEEcCCCC-EEeccc----cCCC--------------CCcceeeeeEEEEEHHHHHHHHHHH
Confidence 3456 4556766654 333321 1100 0123568999999999876665431
Q ss_pred --ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEE
Q 012817 228 --DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVY 305 (456)
Q Consensus 228 --~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 305 (456)
.....+..|+++++++. ..+++|
T Consensus 206 ~~~~~~~~~~d~i~~~~~~-------------------------------------------------------~~v~~~ 230 (369)
T TIGR02092 206 IQRGKLTSLEELIRENLKE-------------------------------------------------------LNINAY 230 (369)
T ss_pred hhcCccccHHHHHHHHhcc-------------------------------------------------------CcEEEE
Confidence 11122234666665531 123344
Q ss_pred EecCcchhhcccCHHHHHHHhHhhhccccccCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECC
Q 012817 306 IASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGR 385 (456)
Q Consensus 306 i~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~ 385 (456)
...+||.+++++++|.++++++++....... +.... ..+.....+.+++ .|++++.|.+|+||+
T Consensus 231 --~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~--~~~~~------~~~~~~~~~~~p~------~i~~~~~i~~~~Ig~ 294 (369)
T TIGR02092 231 --EYTGYLANINSVKSYYKANMDLLDPQNFQSL--FYSSQ------GPIYTKVKDEPPT------YYAENSKVENSLVAN 294 (369)
T ss_pred --ecCCceeEcCCHHHHHHHHHHHhCCcchhhh--cCCCC------CceeeccCCCCCc------EEcCCCEEEEeEEcC
Confidence 4578999999999999999999875422110 00000 0000000111222 333334444556666
Q ss_pred CCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcCC
Q 012817 386 HCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE 449 (456)
Q Consensus 386 ~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~ 449 (456)
+|.|+ +.|.+|+|+++|.||++|.|.+|+|++++.|++++.+.+|+|++++.|++++.+.+.
T Consensus 295 ~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 295 GCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred CCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence 66664 245666666666666666666666666666666666666666666666666666554
No 15
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.4e-41 Score=318.45 Aligned_cols=352 Identities=22% Similarity=0.318 Sum_probs=230.1
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
|++.+||||+|.|+|| .+..||-|.|++||||++|+++.+...+.+++.++.++. .+.+++.+.+.. ++.
T Consensus 1 ~~~~~vILAAGkGTRM----kS~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~--ae~V~~~~~~~~----~v~ 70 (460)
T COG1207 1 MSLSAVILAAGKGTRM----KSDLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHG--AEQVREALAERD----DVE 70 (460)
T ss_pred CCceEEEEecCCCccc----cCCCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCC--HHHHHHHhcccc----Cce
Confidence 7899999999999999 677999999999999999999999999999999999866 457777665432 488
Q ss_pred EEEccCCcChHHHHHHHHhcC-CC--CcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcc
Q 012817 81 VATVPEDVGTAGALRAIAHHL-TA--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKD 155 (456)
Q Consensus 81 ~~~~~~~~gt~~al~~~~~~l-~~--~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~ 155 (456)
++.|.+++||++|+.++.+++ .+ .++||++|| +++...|+++++.|.+.++.++++++..+
T Consensus 71 ~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~-------------- 136 (460)
T COG1207 71 FVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELD-------------- 136 (460)
T ss_pred EEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcC--------------
Confidence 999999999999999999988 33 359999999 67777899999999999999999988765
Q ss_pred cCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhc----Ccccc
Q 012817 156 KTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ----KDKFQ 231 (456)
Q Consensus 156 ~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~----~~~~~ 231 (456)
+|..||-+..++++. +..++| +|+..-.++ .-..+|+|+|+|....|.++|.+ |...+
T Consensus 137 ---dP~GYGRIvr~~~g~-V~~IVE----~KDA~~eek----------~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgE 198 (460)
T COG1207 137 ---DPTGYGRIVRDGNGE-VTAIVE----EKDASEEEK----------QIKEINTGIYAFDGAALLRALPKLSNNNAQGE 198 (460)
T ss_pred ---CCCCcceEEEcCCCc-EEEEEE----cCCCCHHHh----------cCcEEeeeEEEEcHHHHHHHHHHhccccccCc
Confidence 378899999998776 556665 343322222 12357999999999988888864 22344
Q ss_pred ccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcc
Q 012817 232 SLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK 311 (456)
Q Consensus 232 s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~ 311 (456)
-+.+|++..+..++... .++..+...
T Consensus 199 YYLTDvI~i~~~~g~~V------------------------------------------------------~a~~~~d~~ 224 (460)
T COG1207 199 YYLTDVIAIARNEGEKV------------------------------------------------------RAVHVDDEE 224 (460)
T ss_pred EeHHHHHHHHHhCCCeE------------------------------------------------------EEEecCchH
Confidence 55677777665443221 222112111
Q ss_pred hhhcccCHHHHHHHh--------Hhhhcccccc--CCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeee
Q 012817 312 YCVRLNSIQAFMDIN--------RDVIGEANHL--SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS 381 (456)
Q Consensus 312 ~~~~i~~~~~y~~~~--------~~~l~~~~~~--~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s 381 (456)
-...+|+......+. ..++.....+ ....++.....|++.+.|.+++.+.+++.||++|+||++|.|++|
T Consensus 225 E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds 304 (460)
T COG1207 225 EVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDS 304 (460)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEee
Confidence 222334333322221 1122111111 112233444444444444444444444555555555555555555
Q ss_pred EECCCCE-----------------ECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCC
Q 012817 382 VIGRHCR-----------------IGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAG 443 (456)
Q Consensus 382 ~Ig~~~~-----------------ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~ 443 (456)
.|++++. |||.+.++ +|.|+++++||..+.+.++.||+++.+++-++|.++.||+++.||+|
T Consensus 305 ~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAG 384 (460)
T COG1207 305 VIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAG 384 (460)
T ss_pred EEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccc
Confidence 5554444 44444444 44455555555555555555555555555556666677777777777
Q ss_pred cEEcC
Q 012817 444 CEYKG 448 (456)
Q Consensus 444 ~~~~~ 448 (456)
++..+
T Consensus 385 tItcN 389 (460)
T COG1207 385 TITCN 389 (460)
T ss_pred eEEEc
Confidence 65443
No 16
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.9e-40 Score=336.08 Aligned_cols=349 Identities=17% Similarity=0.220 Sum_probs=248.5
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
|+|+|||||||.|+||++ ..||+|+|++|||||+|+|++|.++|+++++|++++.. +.+.+++.. .++.
T Consensus 6 ~~~~avILAaG~gtRl~~----~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~--~~i~~~~~~-----~~i~ 74 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS----ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGA--EQVEAALQG-----SGVA 74 (481)
T ss_pred CCceEEEECCCCCCcCCC----CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCH--HHHHHHhcc-----CCcE
Confidence 689999999999999964 48999999999999999999999999999999998652 356655532 2356
Q ss_pred EEEccCCcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCccc
Q 012817 81 VATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (456)
Q Consensus 81 ~~~~~~~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~ 156 (456)
++.++.+.|++++++.+++.+. ++++++++||. +.+.+++++++.|++.++++++++.+.+.
T Consensus 75 ~v~~~~~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~-------------- 140 (481)
T PRK14358 75 FARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPD-------------- 140 (481)
T ss_pred EecCCCcCCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCC--------------
Confidence 6666667899999999888774 35699999994 66778999999999999998888766542
Q ss_pred CCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHH---HHHHHhcCcccccc
Q 012817 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSV---LQEVLDQKDKFQSL 233 (456)
Q Consensus 157 ~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~v---l~~~~~~~~~~~s~ 233 (456)
+.+||++.+|++++ +..+.|+++..+ . +..++++++|+|+|++++ ++.+.......+.+
T Consensus 141 ---~~~yG~v~~d~~g~-v~~~~Ek~~~~~----~----------~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~ 202 (481)
T PRK14358 141 ---ATGYGRIVRGADGA-VERIVEQKDATD----A----------EKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYY 202 (481)
T ss_pred ---CCCceEEEECCCCC-EEEEEECCCCCh----h----------HhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEE
Confidence 45699999998775 455554221000 0 012356899999999655 43321111111222
Q ss_pred ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchh
Q 012817 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 313 (456)
Q Consensus 234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~ 313 (456)
.+|+++.+.+++. ++.+| +..++|
T Consensus 203 l~d~i~~~~~~g~------------------------------------------------------~i~~~--~~~~~~ 226 (481)
T PRK14358 203 LTDLLGLYRAGGA------------------------------------------------------QVRAF--KLSDPD 226 (481)
T ss_pred HHHHHHHHHHCCC------------------------------------------------------eEEEE--ecCCHH
Confidence 3588888876542 23344 344567
Q ss_pred hcccCHHHHHHHhHh-hhcccc---------cc-CC-CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeee
Q 012817 314 VRLNSIQAFMDINRD-VIGEAN---------HL-SG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS 381 (456)
Q Consensus 314 ~~i~~~~~y~~~~~~-~l~~~~---------~~-~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s 381 (456)
..++...+|+..+++ ++.+.. .+ ++ ..++.++..|++++.|++++.|.+++.||++|.|+++|.|++|
T Consensus 227 ~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~s 306 (481)
T PRK14358 227 EVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDS 306 (481)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeee
Confidence 666665555444443 332211 01 11 1223566777777888888888888888999999999999889
Q ss_pred EECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEe-----------------cCeEECCCCEECCC
Q 012817 382 VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL-----------------KDCQVGQGYVVSAG 443 (456)
Q Consensus 382 ~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i-----------------~~~~i~~~~~v~~~ 443 (456)
+|+++|.|+++++|.+++|++++.||+++.+. +++|++++.|++++.| .+++||+++.|+++
T Consensus 307 vI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~ 386 (481)
T PRK14358 307 VLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAG 386 (481)
T ss_pred EECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCC
Confidence 99999999999988888888888888888886 7888888888876553 45667777777777
Q ss_pred cEEcC
Q 012817 444 CEYKG 448 (456)
Q Consensus 444 ~~~~~ 448 (456)
+.+.+
T Consensus 387 ~~i~~ 391 (481)
T PRK14358 387 TIVAN 391 (481)
T ss_pred EEEeC
Confidence 66643
No 17
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.6e-39 Score=328.60 Aligned_cols=347 Identities=18% Similarity=0.305 Sum_probs=254.9
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~ 81 (456)
++.|||||||.|+||+ ...||+|+|++|+|||+|+|++|.++|++++++++++.. +.+.+++.+. ..+.+
T Consensus 3 ~~~avIlAaG~g~Rl~----~~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~--~~i~~~~~~~----~~i~~ 72 (459)
T PRK14355 3 NLAAIILAAGKGTRMK----SDLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQA--EKVREHFAGD----GDVSF 72 (459)
T ss_pred cceEEEEcCCCCcccC----CCCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCH--HHHHHHhccC----CceEE
Confidence 4899999999999994 468999999999999999999999999999999998652 3555555432 13556
Q ss_pred EEccCCcChHHHHHHHHhcCCC--CcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817 82 ATVPEDVGTAGALRAIAHHLTA--KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (456)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~l~~--~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (456)
..++...|++++++.+++.+.+ ++|+++.||. +.+.+++++++.|.+.+++++++..+.. +
T Consensus 73 ~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~--~------------- 137 (459)
T PRK14355 73 ALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLE--N------------- 137 (459)
T ss_pred EecCCCCCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcC--C-------------
Confidence 5566678999999999888753 6799999995 5677899999999888888887765542 1
Q ss_pred CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----ccccc
Q 012817 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSL 233 (456)
Q Consensus 158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s~ 233 (456)
+..|+.+.+|++++ +..+.+ |+...+. ...++++++|+|+|++++|.+.++... ..+..
T Consensus 138 --~~~~g~v~~d~~g~-v~~~~e-----k~~~~~~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~ 200 (459)
T PRK14355 138 --PFGYGRIVRDADGR-VLRIVE-----EKDATPE---------ERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYY 200 (459)
T ss_pred --CCcCCEEEEcCCCC-EEEEEE-----cCCCChh---------HhhccEEEEEEEEEeHHHHHHHHHHcCccccCCcee
Confidence 45688888887776 444543 2110000 012467899999999997655554211 11223
Q ss_pred ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcch-
Q 012817 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY- 312 (456)
Q Consensus 234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~- 312 (456)
.+|+++.+++++ .++.+| +..+|
T Consensus 201 ~~d~i~~l~~~g------------------------------------------------------~~v~~~--~~~~~~ 224 (459)
T PRK14355 201 LTDIVAMAAAEG------------------------------------------------------LRCLAF--PVADPD 224 (459)
T ss_pred HHHHHHHHHHCC------------------------------------------------------CeEEEE--EcCCHH
Confidence 458888887643 234455 33455
Q ss_pred -hhcccCHHHHHHHhHhhhcccc---------ccCCC-cccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeee
Q 012817 313 -CVRLNSIQAFMDINRDVIGEAN---------HLSGY-NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS 381 (456)
Q Consensus 313 -~~~i~~~~~y~~~~~~~l~~~~---------~~~~~-~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s 381 (456)
|.+++++++|+++++.++.... .++.. ..+++++.|++++.|++++.|++++.||++|.|+++|.|.+|
T Consensus 225 ~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~ 304 (459)
T PRK14355 225 EIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGC 304 (459)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCC
Confidence 8899999999999765543210 11221 245566777788888888888888899999999999999999
Q ss_pred EECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-----------------CeEECCCCEECCC
Q 012817 382 VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-----------------DCQVGQGYVVSAG 443 (456)
Q Consensus 382 ~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-----------------~~~i~~~~~v~~~ 443 (456)
+||++|.|++++.|.+|+|++++.||+++.+. ++.|++++.||.++.+. ++.||+++.||++
T Consensus 305 ~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~ 384 (459)
T PRK14355 305 RIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCG 384 (459)
T ss_pred EEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccc
Confidence 99999999999999999999999999998886 78888888877765433 4556666666666
Q ss_pred cEE
Q 012817 444 CEY 446 (456)
Q Consensus 444 ~~~ 446 (456)
+.+
T Consensus 385 ~~~ 387 (459)
T PRK14355 385 TIT 387 (459)
T ss_pred eee
Confidence 543
No 18
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.1e-38 Score=320.62 Aligned_cols=348 Identities=18% Similarity=0.244 Sum_probs=232.4
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~ 81 (456)
++.|||||||.|+||+| ..||+|+|++|||||+|+|++|.+++++++++++++.. +.+.+++.+.. ..+.+
T Consensus 4 ~~~avILAaG~gtRm~~----~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~~---~~~~~ 74 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRS----DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDR--ERVAPAVAELA---PEVDI 74 (482)
T ss_pred CceEEEEcCCCCCcCCC----CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCH--HHHHHHhhccC---CccEE
Confidence 46799999999999964 58999999999999999999999999999999998653 35555554321 12445
Q ss_pred EEccCCcChHHHHHHHHhcCC---CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCccc
Q 012817 82 ATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (456)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~ 156 (456)
..++...|++++++.+++.+. ++++++++||. +...++.++++.|++.++.++++..+..
T Consensus 75 ~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~--------------- 139 (482)
T PRK14352 75 AVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD--------------- 139 (482)
T ss_pred EeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC---------------
Confidence 555667899999999988875 25699999995 5567899999999888887777655432
Q ss_pred CCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc----ccc
Q 012817 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQS 232 (456)
Q Consensus 157 ~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~----~~s 232 (456)
++..|+.+..|++++ +..+.+++.... . +...+++++|+|+|++++|..++.+... ...
T Consensus 140 --~p~~yg~~~~~~~g~-V~~~~EKp~~~~-----~---------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~ 202 (482)
T PRK14352 140 --DPTGYGRILRDQDGE-VTAIVEQKDATP-----S---------QRAIREVNSGVYAFDAAVLRSALARLSSDNAQGEL 202 (482)
T ss_pred --CCCCCCEEEECCCCC-EEEEEECCCCCH-----H---------HhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcE
Confidence 255788888887776 455543221100 0 1124568999999999999766543111 122
Q ss_pred cccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcch
Q 012817 233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY 312 (456)
Q Consensus 233 ~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~ 312 (456)
...|+++++++.+ .++.+| +..+|
T Consensus 203 ~l~d~i~~l~~~g------------------------------------------------------~~V~~~--~~~g~ 226 (482)
T PRK14352 203 YLTDVLAIAREAG------------------------------------------------------HRVGAH--HADDS 226 (482)
T ss_pred eHHHHHHHHHHCC------------------------------------------------------CeEEEE--ecCCc
Confidence 3468888887643 233445 56789
Q ss_pred hhcccCHHHH------HHHhHhhhcccc----c-cC-CCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee
Q 012817 313 CVRLNSIQAF------MDINRDVIGEAN----H-LS-GYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 380 (456)
Q Consensus 313 ~~~i~~~~~y------~~~~~~~l~~~~----~-~~-~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~ 380 (456)
|.+++.++.| ..+++.++.... . +. ...++.++++|++++.|++++.|++++.||++|.|+++|.|.+
T Consensus 227 w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~ 306 (482)
T PRK14352 227 AEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTD 306 (482)
T ss_pred ceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEec
Confidence 9988877665 334444443211 1 11 1234456667777777777777777777777777777777776
Q ss_pred eEECCCCEECCCcEEeCeEECCCCEE------------------CCCcEEcCeEECCCCEECCCcEecCeEECCCCEECC
Q 012817 381 SVIGRHCRIGSNVKVVNSVVMNHVTI------------------GDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA 442 (456)
Q Consensus 381 s~Ig~~~~ig~~~~i~~s~i~~~~~i------------------g~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~ 442 (456)
++||++|.|++ +.+.+++|++++.| |.++.+.+|+|++++.|++.+.+.+++||+++.|++
T Consensus 307 ~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~ 385 (482)
T PRK14352 307 VTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGA 385 (482)
T ss_pred CEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECC
Confidence 66666655532 33444444444444 444444455555666666666666777888888888
Q ss_pred CcEEc
Q 012817 443 GCEYK 447 (456)
Q Consensus 443 ~~~~~ 447 (456)
++.+.
T Consensus 386 ~~~i~ 390 (482)
T PRK14352 386 SSVFV 390 (482)
T ss_pred CcEEe
Confidence 77654
No 19
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.2e-38 Score=319.71 Aligned_cols=343 Identities=17% Similarity=0.212 Sum_probs=237.9
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
+.|||||||.|+|| ....||+|+|++|||||+|++++|...+++++++++++. .+.+.+++.+ ..+.++
T Consensus 6 ~~aiILAaG~gtR~----~~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~-----~~~~~v 74 (456)
T PRK14356 6 TGALILAAGKGTRM----HSDKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHR--ADMVRAAFPD-----EDARFV 74 (456)
T ss_pred eeEEEEcCCCCccC----CCCCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhccc-----cCceEE
Confidence 78999999999999 557999999999999999999999999999999998754 2345554432 235666
Q ss_pred EccCCcChHHHHHHHHhcCC---CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817 83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (456)
Q Consensus 83 ~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (456)
.++.+.|++++++.+++.+. .+++++++||. +...+++.+++.|+ +++++++....+ +
T Consensus 75 ~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~--~------------- 137 (456)
T PRK14356 75 LQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLP--D------------- 137 (456)
T ss_pred EcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcC--C-------------
Confidence 66667899999999987774 36799999995 55677999998876 556666665543 2
Q ss_pred CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc----cccc
Q 012817 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSL 233 (456)
Q Consensus 158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~----~~s~ 233 (456)
+..|+++..+ +++ +..+.++.+.... . ....+.++++|+|+|++++|..+++...+ ....
T Consensus 138 --~~~~g~v~~~-~g~-V~~~~ek~~~~~~----~--------~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ 201 (456)
T PRK14356 138 --PGAYGRVVRR-NGH-VAAIVEAKDYDEA----L--------HGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYY 201 (456)
T ss_pred --CCCceEEEEc-CCe-EEEEEECCCCChH----H--------hhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEE
Confidence 5568887663 554 4454432111000 0 01135678999999999998766543211 1122
Q ss_pred ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchh
Q 012817 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 313 (456)
Q Consensus 234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~ 313 (456)
.+|+++.+.+.+ .++.+|......+|
T Consensus 202 ltd~i~~~~~~g------------------------------------------------------~~v~~~~~~~~~~~ 227 (456)
T PRK14356 202 ITDLVGLAVAEG------------------------------------------------------MNVLGVNCGEDPNL 227 (456)
T ss_pred HHHHHHHHHHCC------------------------------------------------------CeEEEEEcCCcCeE
Confidence 357777765432 22334422222357
Q ss_pred hcccCHHHHHHHhHhhhccc--------ccc--CCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEE
Q 012817 314 VRLNSIQAFMDINRDVIGEA--------NHL--SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI 383 (456)
Q Consensus 314 ~~i~~~~~y~~~~~~~l~~~--------~~~--~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~I 383 (456)
.+++++++|..+...+..+. ..+ ....++++.+.+++++.|.+++.|++++.||++|.|+++|.|.+++|
T Consensus 228 ~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i 307 (456)
T PRK14356 228 LGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVV 307 (456)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEE
Confidence 89999999988765443211 111 11234455666667777777777777888999999999999988999
Q ss_pred CCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEECCC
Q 012817 384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAG 443 (456)
Q Consensus 384 g~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~ 443 (456)
|++|.|++++.|.+|+|+++|.||+++.|. +++|+++++|++++.+.+++|++++.++++
T Consensus 308 ~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~ 368 (456)
T PRK14356 308 SSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHL 368 (456)
T ss_pred CCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEeccc
Confidence 999999998888888888888888888886 788888888887776655555554444333
No 20
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.5e-38 Score=318.82 Aligned_cols=347 Identities=16% Similarity=0.229 Sum_probs=221.6
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
|+|++||||||.|+||+ ...||+|+|++|||||+|+++.|..++++++++++++.. +.+++++.+ ..+.
T Consensus 4 ~~~~aiIlAaG~gtRl~----~~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~--~~i~~~~~~-----~~~~ 72 (456)
T PRK09451 4 SAMSVVILAAGKGTRMY----SDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGG--DLLKQTLAD-----EPLN 72 (456)
T ss_pred CCceEEEEcCCCCCcCC----CCCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCH--HHHHHhhcc-----CCcE
Confidence 36899999999999995 468999999999999999999999999999999998542 355555532 1356
Q ss_pred EEEccCCcChHHHHHHHHhcCC-CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817 81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (456)
Q Consensus 81 ~~~~~~~~gt~~al~~~~~~l~-~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (456)
+..+++..|++++++.+++.+. ++.+++++||. +.+.++.++++.|.+.+ +++++.+.+ +
T Consensus 73 ~i~~~~~~Gt~~al~~a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~--~------------- 135 (456)
T PRK09451 73 WVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLD--N------------- 135 (456)
T ss_pred EEECCCCCCcHHHHHHHHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcC--C-------------
Confidence 6666667899999999988775 35799999995 66778999998886544 334443332 2
Q ss_pred CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----ccccc
Q 012817 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSL 233 (456)
Q Consensus 158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s~ 233 (456)
+..|+++.. +++ .+..+.|++.... . ...++++++|+|+|++++|.++++... ..+.+
T Consensus 136 --~~~yG~v~~-~~g-~V~~~~EKp~~~~-----~---------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~ 197 (456)
T PRK09451 136 --PTGYGRITR-ENG-KVVGIVEQKDATD-----E---------QRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYY 197 (456)
T ss_pred --CCCceEEEe-cCC-eEEEEEECCCCCh-----H---------HhhccEEEEEEEEEEHHHHHHHHHhcCCccccCcee
Confidence 556888744 455 4556654321110 0 112457899999999998876664321 12224
Q ss_pred ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEe----cC
Q 012817 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA----SN 309 (456)
Q Consensus 234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~----~~ 309 (456)
.+|+++.+++++.. +.+|.. ..
T Consensus 198 l~d~i~~~i~~g~~------------------------------------------------------v~~~~~~~~~~~ 223 (456)
T PRK09451 198 ITDIIALAHQEGRE------------------------------------------------------IVAVHPQRLSEV 223 (456)
T ss_pred HHHHHHHHHHCCCe------------------------------------------------------EEEEecCCHHHh
Confidence 46999998876531 222210 12
Q ss_pred cch--hhcccCHHHHHHHhH--hhhcccccc-CCC-cccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEE
Q 012817 310 SKY--CVRLNSIQAFMDINR--DVIGEANHL-SGY-NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI 383 (456)
Q Consensus 310 ~~~--~~~i~~~~~y~~~~~--~~l~~~~~~-~~~-~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~I 383 (456)
.+| |.+++++++|+++++ .++.....+ ++. ....+...+++++.|++++.|.+++.||++|.|+++|.|.+|+|
T Consensus 224 ~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~i 303 (456)
T PRK09451 224 EGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVI 303 (456)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEE
Confidence 445 667999999999874 233221111 110 01112334455555555555555556666666666666655666
Q ss_pred CCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCC-----------------cEecCeEECCCCEECCCcE
Q 012817 384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQER-----------------VALKDCQVGQGYVVSAGCE 445 (456)
Q Consensus 384 g~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~-----------------~~i~~~~i~~~~~v~~~~~ 445 (456)
+++|.|++++.|.+|+|+++++||+++.|. +++|++++.||++ +.+.+|.||+++.|++++.
T Consensus 304 g~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~ 383 (456)
T PRK09451 304 GDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTI 383 (456)
T ss_pred cCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccccccEECCCCEEcCCeE
Confidence 666666666666655555555555555554 5555555554444 4445567777777776665
Q ss_pred Ec
Q 012817 446 YK 447 (456)
Q Consensus 446 ~~ 447 (456)
+.
T Consensus 384 ~~ 385 (456)
T PRK09451 384 TC 385 (456)
T ss_pred Ee
Confidence 43
No 21
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=3.1e-37 Score=315.40 Aligned_cols=334 Identities=21% Similarity=0.303 Sum_probs=231.2
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
|+|||||||.|+||+| ..||+|+|++|+|||+|+++++.++|+++++|++++. .+.+.+++.++ ++.+.
T Consensus 1 m~aiIlAaG~g~R~~~----~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~--~~~i~~~~~~~-----~i~~~ 69 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS----DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHG--AEQVRKALANR-----DVNWV 69 (451)
T ss_pred CeEEEEcCCCCcccCC----CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhcCC-----CcEEE
Confidence 7899999999999964 5899999999999999999999999999999998865 23565555442 35565
Q ss_pred EccCCcChHHHHHHHHhcCCC-CcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCC
Q 012817 83 TVPEDVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (456)
Q Consensus 83 ~~~~~~gt~~al~~~~~~l~~-~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (456)
.++...|++++++.+++.+.+ ++++++.||. +.+.++..+++.|.+.+ +++++.+.+ +
T Consensus 70 ~~~~~~G~~~ai~~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~--~~~~~~~~~--~--------------- 130 (451)
T TIGR01173 70 LQAEQLGTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQNG--ITLLTAKLP--D--------------- 130 (451)
T ss_pred EcCCCCchHHHHHHHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhCC--EEEEEEecC--C---------------
Confidence 555668999999999988853 5799999995 55668999999887643 555554432 1
Q ss_pred CCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc----cccccc
Q 012817 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSLKQ 235 (456)
Q Consensus 160 ~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~----~~s~~~ 235 (456)
+..|+.+..|++++ +..+.++.... +.. ....++++|+|+|++++|..++++..+ .+.+..
T Consensus 131 ~~~~g~v~~d~~g~-v~~~~ek~~~~-----~~~---------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~ 195 (451)
T TIGR01173 131 PTGYGRIIRENDGK-VTAIVEDKDAN-----AEQ---------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLT 195 (451)
T ss_pred CCCCCEEEEcCCCC-EEEEEEcCCCC-----hHH---------hcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHH
Confidence 44588888887766 44444321100 000 013467899999999997665543211 112235
Q ss_pred chhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcch--h
Q 012817 236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY--C 313 (456)
Q Consensus 236 d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~--~ 313 (456)
|+++.+++++. ++..| +..+| |
T Consensus 196 ~~~~~l~~~g~------------------------------------------------------~v~~~--~~~~~~~~ 219 (451)
T TIGR01173 196 DVIALAVADGE------------------------------------------------------TVRAV--QVDDSDEV 219 (451)
T ss_pred HHHHHHHHCCC------------------------------------------------------eEEEE--EcCChhhe
Confidence 77777765431 23344 33455 6
Q ss_pred hcccCHHHHHHHhHhhhc--------ccccc--CCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEE
Q 012817 314 VRLNSIQAFMDINRDVIG--------EANHL--SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI 383 (456)
Q Consensus 314 ~~i~~~~~y~~~~~~~l~--------~~~~~--~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~I 383 (456)
.++++++++...+..+.. .+..+ .....+.+.+.|++++.|++++.|++++.||++|.|+++|.|.+++|
T Consensus 220 ~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i 299 (451)
T TIGR01173 220 LGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVI 299 (451)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEe
Confidence 778888887665443221 11111 11223456667777788888888888888888888888888888888
Q ss_pred CCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCC
Q 012817 384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQG 437 (456)
Q Consensus 384 g~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~ 437 (456)
|++|.|++++.|.+|+|+++|.||+++.|. +++|+++|.|++++.+.++.|+++
T Consensus 300 ~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~ 354 (451)
T TIGR01173 300 GSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKG 354 (451)
T ss_pred cCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCC
Confidence 888888888888888888888888888886 677777777777665544444433
No 22
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.7e-36 Score=309.11 Aligned_cols=349 Identities=17% Similarity=0.229 Sum_probs=219.7
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~ 81 (456)
++.|||||||.|+||+ ...||+|+|++|||||+|++++|..+++++++|++++.. +.+.+++.+.. ..+.+
T Consensus 5 ~~~aiILAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~--~~i~~~~~~~~---~~~~~ 75 (446)
T PRK14353 5 TCLAIILAAGEGTRMK----SSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGA--EAVAAAAAKIA---PDAEI 75 (446)
T ss_pred cceEEEEcCCCCCccC----CCCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCH--HHHHHHhhccC---CCceE
Confidence 5789999999999994 357999999999999999999999999999999998653 34555553321 12344
Q ss_pred EEccCCcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817 82 ATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (456)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (456)
.......|++++++.+++.+. ++++++++||. +...+++.+++. .+.+++++++..+.. +
T Consensus 76 ~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~-~~~~~~~~i~~~~~~--~------------- 139 (446)
T PRK14353 76 FVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRER-LADGADVVVLGFRAA--D------------- 139 (446)
T ss_pred EEcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHh-HhcCCcEEEEEEEeC--C-------------
Confidence 445566899999999988773 56799999995 555578888874 445667766655432 1
Q ss_pred CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----ccccc
Q 012817 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSL 233 (456)
Q Consensus 158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s~ 233 (456)
+..|+.+.. ++++ +..+.+++..+. . ...+.++++|+|+|+++.|..++++.. ....+
T Consensus 140 --~~~~g~~~~-~~g~-v~~~~ek~~~~~-----~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 201 (446)
T PRK14353 140 --PTGYGRLIV-KGGR-LVAIVEEKDASD-----E---------ERAITLCNSGVMAADGADALALLDRVGNDNAKGEYY 201 (446)
T ss_pred --CCcceEEEE-CCCe-EEEEEECCCCCh-----H---------HhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEe
Confidence 456787766 3444 455543211100 0 012356789999999987755554311 11122
Q ss_pred ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchh
Q 012817 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 313 (456)
Q Consensus 234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~ 313 (456)
..|.++++++.+ .++..|.. ...+|
T Consensus 202 ~~d~~~~l~~~g------------------------------------------------------~~v~~~~~-~~~~~ 226 (446)
T PRK14353 202 LTDIVAIARAEG------------------------------------------------------LRVAVVEA-PEDEV 226 (446)
T ss_pred HHHHHHHHHHCC------------------------------------------------------CeEEEEec-Chhhc
Confidence 356677776543 22334421 23579
Q ss_pred hcccCHHHHHHHhHhh---------hccccccCC-CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEE
Q 012817 314 VRLNSIQAFMDINRDV---------IGEANHLSG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI 383 (456)
Q Consensus 314 ~~i~~~~~y~~~~~~~---------l~~~~~~~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~I 383 (456)
.+++++++|..++..+ +....-+.+ ..++++...|++++.|++++.|++++.|+++|.|++++.|.+++|
T Consensus 227 ~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~I 306 (446)
T PRK14353 227 RGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHV 306 (446)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEE
Confidence 9999999998776422 221100111 123344555666666666666666666666666666666666677
Q ss_pred CCCCEECCCcEEe-CeEECCCCEECCCcEEcC-----------------eEECCCCEECCCcEe--------cCeEECCC
Q 012817 384 GRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG-----------------SVICSNAQLQERVAL--------KDCQVGQG 437 (456)
Q Consensus 384 g~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~-----------------~ii~~~~~I~~~~~i--------~~~~i~~~ 437 (456)
|++|.||+++.|. +|+|+++|.||+++.+.+ ++|+++|.||+++++ .+++||++
T Consensus 307 g~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~ 386 (446)
T PRK14353 307 GEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAG 386 (446)
T ss_pred CCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCC
Confidence 7777777777766 666666666666665544 455555555555443 13455555
Q ss_pred CEECCCcEEcC
Q 012817 438 YVVSAGCEYKG 448 (456)
Q Consensus 438 ~~v~~~~~~~~ 448 (456)
+.|++++.+..
T Consensus 387 ~~ig~~~~i~~ 397 (446)
T PRK14353 387 AFIGSNSALVA 397 (446)
T ss_pred cEECCCCEEeC
Confidence 55555554443
No 23
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.8e-36 Score=307.69 Aligned_cols=337 Identities=20% Similarity=0.325 Sum_probs=218.1
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
|+++|||||||.|+||+ ..+||+|+|++|||||+|+|++|.+++++++++++++.. +.+.+++.+ . +.
T Consensus 1 m~~~avIlAaG~g~Rl~----~~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~--~~i~~~~~~----~--~~ 68 (458)
T PRK14354 1 MNRYAIILAAGKGTRMK----SKLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGA--EEVKEVLGD----R--SE 68 (458)
T ss_pred CCceEEEEeCCCCcccC----CCCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCH--HHHHHHhcC----C--cE
Confidence 89999999999999994 468999999999999999999999999999999987653 345555432 1 34
Q ss_pred EEEccCCcChHHHHHHHHhcCCC--CcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCccc
Q 012817 81 VATVPEDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (456)
Q Consensus 81 ~~~~~~~~gt~~al~~~~~~l~~--~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~ 156 (456)
+..++...|++++++.+++++.+ +.++++.|| ++.+.+++++++.|.+.++++++++...+ +
T Consensus 69 ~~~~~~~~g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~--~------------ 134 (458)
T PRK14354 69 FALQEEQLGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAE--N------------ 134 (458)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcC--C------------
Confidence 55555678999999999888753 569999999 46677899999999888888887766543 1
Q ss_pred CCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----cccc
Q 012817 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQS 232 (456)
Q Consensus 157 ~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s 232 (456)
+..|+++..|+++++ ..+.+ |+.. ... .....++++|+|+|+++.|.+.+++.. ....
T Consensus 135 ---~~~~g~v~~d~~~~V-~~~~e-----k~~~-~~~--------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~ 196 (458)
T PRK14354 135 ---PTGYGRIIRNENGEV-EKIVE-----QKDA-TEE--------EKQIKEINTGTYCFDNKALFEALKKISNDNAQGEY 196 (458)
T ss_pred ---CCCceEEEEcCCCCE-EEEEE-----CCCC-ChH--------HhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 445788878877664 44432 2110 000 112456899999999986555543211 0111
Q ss_pred cccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcch
Q 012817 233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY 312 (456)
Q Consensus 233 ~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~ 312 (456)
...|.++.+++.+ .++.+| ...++
T Consensus 197 ~~~d~~~~l~~~g------------------------------------------------------~~v~~~--~~~g~ 220 (458)
T PRK14354 197 YLTDVIEILKNEG------------------------------------------------------EKVGAY--QTEDF 220 (458)
T ss_pred eHHHHHHHHHHCC------------------------------------------------------CeEEEE--ecCCc
Confidence 2356666665432 223344 23334
Q ss_pred hh--cccCHHHHHHHhHhh---hc-----cccc-cCC-CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee
Q 012817 313 CV--RLNSIQAFMDINRDV---IG-----EANH-LSG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 380 (456)
Q Consensus 313 ~~--~i~~~~~y~~~~~~~---l~-----~~~~-~~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~ 380 (456)
|. ++++++++..++..+ +. .... +.. ..++++++.|++++.|++++.|++++.||++|.|++++.|.+
T Consensus 221 ~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~ 300 (458)
T PRK14354 221 EESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVD 300 (458)
T ss_pred ceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEec
Confidence 44 556777776654322 11 1111 111 123455666666666666666666777777777777777777
Q ss_pred eEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCC
Q 012817 381 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGY 438 (456)
Q Consensus 381 s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~ 438 (456)
++||++|.|++ +.+.+++|+++|.||++|.|. +++|++++.|++++.|.++.|++++
T Consensus 301 ~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~ 358 (458)
T PRK14354 301 STIGDGVTITN-SVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGT 358 (458)
T ss_pred cEECCCCEEEE-EEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCC
Confidence 77777776653 455566666666666666665 5666666666555555443333333
No 24
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.6e-36 Score=302.74 Aligned_cols=197 Identities=21% Similarity=0.342 Sum_probs=132.1
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
|+++|||||||.|+||++ .+||+|+|++|+|||+|+++.|..+ +++++|++++. .+.+.+++.+.+. .+.
T Consensus 1 m~~~aiIlAaG~GtRl~~----~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~--~~~i~~~~~~~~~---~v~ 70 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS----SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQ--KERIKEAVLEYFP---GVI 70 (430)
T ss_pred CCccEEEEcCCCCccCCC----CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCC--HHHHHHHHHhcCC---ceE
Confidence 899999999999999954 6999999999999999999999887 68888888765 3466666654321 355
Q ss_pred EEEccC--CcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817 81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (456)
Q Consensus 81 ~~~~~~--~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~ 158 (456)
+..+++ ..|++++++.+.. ..++|++++||.... ..+.++.+.+.++++++.+.+.+ +
T Consensus 71 ~~~~~~~~~~gt~~al~~~~~--~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~--~-------------- 130 (430)
T PRK14359 71 FHTQDLENYPGTGGALMGIEP--KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLA--D-------------- 130 (430)
T ss_pred EEEecCccCCCcHHHHhhccc--CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcC--C--------------
Confidence 655443 3789999877432 257899999996321 23455556666777777666543 1
Q ss_pred CCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----cccccc
Q 012817 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSLK 234 (456)
Q Consensus 159 ~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s~~ 234 (456)
+..|+.+..| +++ +..+.++....+ -...+.+.++|+|+|++++|..+++... ....+.
T Consensus 131 -~~~~g~v~~d-~g~-v~~i~e~~~~~~--------------~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l 193 (430)
T PRK14359 131 -PKGYGRVVIE-NGQ-VKKIVEQKDANE--------------EELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYL 193 (430)
T ss_pred -CccCcEEEEc-CCe-EEEEEECCCCCc--------------ccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceeh
Confidence 4457877665 444 455543211100 0112457899999999999987754221 122234
Q ss_pred cchhHHHhHh
Q 012817 235 QDVLPYLVRS 244 (456)
Q Consensus 235 ~d~l~~l~~~ 244 (456)
+|+++.+++.
T Consensus 194 ~d~i~~l~~~ 203 (430)
T PRK14359 194 TDIIALAIEK 203 (430)
T ss_pred hhHHHHHHHc
Confidence 5777777654
No 25
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.8e-35 Score=301.82 Aligned_cols=176 Identities=22% Similarity=0.396 Sum_probs=131.5
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
|+|||||||.|+||+ ..+||+|+|++|||||+|+|+++.+.+ ++++|++++.. +.+.+++.+ .+.+.
T Consensus 1 m~avIlA~G~gtRl~----~~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~--~~i~~~~~~------~~~~~ 67 (448)
T PRK14357 1 MRALVLAAGKGTRMK----SKIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEA--ELVKKLLPE------WVKIF 67 (448)
T ss_pred CeEEEECCCCCccCC----CCCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCH--HHHHHhccc------ccEEE
Confidence 789999999999994 468999999999999999999999875 88999887553 345554432 24455
Q ss_pred EccCCcChHHHHHHHHhcCC-CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCC
Q 012817 83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (456)
Q Consensus 83 ~~~~~~gt~~al~~~~~~l~-~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (456)
.++...|++++++.+++++. ++.+++++||. +.+.+++++++.|++.++++++++.+.. +
T Consensus 68 ~~~~~~g~~~ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~-----------------~ 130 (448)
T PRK14357 68 LQEEQLGTAHAVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE-----------------D 130 (448)
T ss_pred ecCCCCChHHHHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC-----------------C
Confidence 55667899999999998885 46799999994 6777899999999988999988877653 1
Q ss_pred CCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (456)
Q Consensus 160 ~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~ 225 (456)
+..|+++.+| +++ + .+.+ ++.. +.. ....+++++|+|+|++++|.++++
T Consensus 131 ~~~~g~v~~d-~g~-v-~~~e-----~~~~-~~~--------~~~~~~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 131 PTGYGRIIRD-GGK-Y-RIVE-----DKDA-PEE--------EKKIKEINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred CCCcEEEEEc-CCe-E-EEEE-----CCCC-ChH--------HhcCcEEEeEEEEEEHHHHHHHHH
Confidence 5578988877 444 3 3332 1100 000 001346899999999999766554
No 26
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5e-34 Score=291.42 Aligned_cols=182 Identities=24% Similarity=0.364 Sum_probs=136.4
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
+.+||||||.|+||+ ...||+|+|++|||||+|+|++|.++++.+++|++++.. +.+.+++.+. ..+.++
T Consensus 2 ~~~iIlAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~----~~i~~v 71 (450)
T PRK14360 2 LAVAILAAGKGTRMK----SSLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQA--EEVEQSLAHL----PGLEFV 71 (450)
T ss_pred ceEEEEeCCCCccCC----CCCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCH--HHHHHHhccc----CCeEEE
Confidence 789999999999994 468999999999999999999999999999999988653 3455554331 135566
Q ss_pred EccCCcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817 83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (456)
Q Consensus 83 ~~~~~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~ 158 (456)
.++...|++++++.+++.+. ++++++++||. +.+.+++++++.|++.+++++++..+.. +
T Consensus 72 ~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~--~-------------- 135 (450)
T PRK14360 72 EQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP--N-------------- 135 (450)
T ss_pred EeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC--C--------------
Confidence 55566899999998888774 35699999995 6677899999999988888877665432 2
Q ss_pred CCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhc
Q 012817 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (456)
Q Consensus 159 ~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~ 226 (456)
+..|+.+.+|+++++ ..+.++..... ....++++++|+|+|+++.|.+++++
T Consensus 136 -~~~~g~~~~d~~g~v-~~~~ek~~~~~--------------~~~~~~~~~~Giy~f~~~~l~~~~~~ 187 (450)
T PRK14360 136 -PKGYGRVFCDGNNLV-EQIVEDRDCTP--------------AQRQNNRINAGIYCFNWPALAEVLPK 187 (450)
T ss_pred -CCCccEEEECCCCCE-EEEEECCCCCh--------------hHhcCcEEEEEEEEEEHHHHHHHHhh
Confidence 456888888887764 44443211100 01135688999999999888777643
No 27
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.7e-34 Score=256.96 Aligned_cols=235 Identities=21% Similarity=0.345 Sum_probs=190.4
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
|++||||||.||||+|+ |...||+|+|+.+||||+|.|+.|..+|+++|.|++++++ ...+++++.+......+++|.
T Consensus 1 mKgiILAgG~GTRL~Pl-T~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~-~~~~~~llGdgs~~gv~itY~ 78 (286)
T COG1209 1 MKGVILAGGSGTRLRPL-TRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPED-KPTFKELLGDGSDFGVDITYA 78 (286)
T ss_pred CCcEEecCcCccccccc-cccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCc-hhhhhhhhcCccccCcceEEE
Confidence 78999999999999999 9999999999999999999999999999999999998654 346777666644445678899
Q ss_pred EccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCc
Q 012817 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (456)
Q Consensus 83 ~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (456)
.|+++.|.++|+..+.+++.+++|+++.||.++..++.++++.+.+.+++++++++++. +|++
T Consensus 79 ~Q~~p~GlA~Av~~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~-----------------dP~r 141 (286)
T COG1209 79 VQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD-----------------DPSR 141 (286)
T ss_pred ecCCCCcHHHHHHHHHhhcCCCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC-----------------Cccc
Confidence 99999999999999999998899999999976666999999999998899999998876 2889
Q ss_pred ccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc--ccccccchhHH
Q 012817 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK--FQSLKQDVLPY 240 (456)
Q Consensus 163 ~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~--~~s~~~d~l~~ 240 (456)
||++.+|++++ +..+.| |+. .+.|+++-+|+|+|.+++|..+-.-.++ .+--.+|.+.+
T Consensus 142 fGV~e~d~~~~-v~~l~E-----KP~-------------~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~ 202 (286)
T COG1209 142 YGVVEFDEDGK-VIGLEE-----KPK-------------EPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDL 202 (286)
T ss_pred ceEEEEcCCCc-EEEeEE-----CCC-------------CCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHH
Confidence 99999998884 556653 321 3468999999999999999755321111 12223688888
Q ss_pred HhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHH
Q 012817 241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ 320 (456)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~ 320 (456)
+++++.. ... ....++|.+.++++
T Consensus 203 ~i~~G~~------------------------------------------------------~~~--~~~~G~WlDtGt~~ 226 (286)
T COG1209 203 YIEKGYL------------------------------------------------------VVA--ILIRGWWLDTGTPE 226 (286)
T ss_pred HHHcCcE------------------------------------------------------EEE--EEccceEEecCChh
Confidence 8775532 111 13456999999999
Q ss_pred HHHHHhHhhhc
Q 012817 321 AFMDINRDVIG 331 (456)
Q Consensus 321 ~y~~~~~~~l~ 331 (456)
++.++++.+..
T Consensus 227 slleA~~~i~~ 237 (286)
T COG1209 227 SLLEANNFVRT 237 (286)
T ss_pred hHHHHHHHHHH
Confidence 99999988765
No 28
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=9.8e-32 Score=256.46 Aligned_cols=235 Identities=15% Similarity=0.294 Sum_probs=173.4
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc--------
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-------- 73 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-------- 73 (456)
+|+|||||||.|+||+|+ |...||||+|++|||||+|+++++..+|+++++|++++. .+.+.+|+.+.+
T Consensus 3 ~mkavILAaG~GTRL~Pl-T~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~--~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHAS--KNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred ceEEEEECCCCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCC--hHHHHHHHhchHHHHHHHHH
Confidence 699999999999999999 999999999999999999999999999999999999865 335666554311
Q ss_pred --------------cCccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccC--------CChhHHHHHHHhcCc
Q 012817 74 --------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA 131 (456)
Q Consensus 74 --------------~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~--------~~l~~~l~~~~~~~a 131 (456)
.....+.++.++++.||++|++.+.+.+.+++|+++.||.+++ .++.++++.|.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~ 159 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred hcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCC
Confidence 0123466777888899999999999999767899999998876 489999999987777
Q ss_pred eEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEec----CCCcE--EEEeecccccccccccchHHHhhcceeEEec
Q 012817 132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQF--LLHIATGAELEKDTRIRKSILRAVGQMDIRA 205 (456)
Q Consensus 132 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d----~~~~~--l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 205 (456)
.++++. ..+ ++ +.+||++.+| +++++ +..+.| |+.. + ....+
T Consensus 160 ~~~~~~-~~~-~~---------------~~~yGvv~~~~~~d~~g~v~~I~~~~E-----KP~~-~---------~~~~s 207 (297)
T TIGR01105 160 SQVLAK-RMP-GD---------------LSEYSVIQTKEPLDREGKVSRIVEFIE-----KPDQ-P---------QTLDS 207 (297)
T ss_pred cEEEEE-EcC-CC---------------CccceEEEecccccCCCCeeeEeEEEE-----CCCC-c---------ccCCc
Confidence 664433 322 12 5679999984 34542 344443 3210 0 01246
Q ss_pred CCccceEEeechHHHHHHHhcCcc---ccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcc
Q 012817 206 DLMDAHMYAFNRSVLQEVLDQKDK---FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF 282 (456)
Q Consensus 206 ~~~~~giYi~~~~vl~~~~~~~~~---~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (456)
+++++|+|+|++++|..+ +.... .....+|+++.+++++
T Consensus 208 ~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~~ltd~i~~l~~~~------------------------------------- 249 (297)
T TIGR01105 208 DLMAVGRYVLSADIWAEL-ERTEPGAWGRIQLTDAIAELAKKQ------------------------------------- 249 (297)
T ss_pred CEEEEEEEEECHHHHHHH-hcCCCCCCCeeeHHHHHHHHHhcC-------------------------------------
Confidence 789999999999999755 33211 1112358888887532
Q ss_pred cccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHHHHHHHhHhh
Q 012817 283 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (456)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~ 329 (456)
++.+| ...++|.+++++++|.+++.++
T Consensus 250 ------------------~v~~~--~~~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 250 ------------------SVDAM--LMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred ------------------CEEEE--EeccEEECCCCHHHHHHHHHHH
Confidence 23445 3468999999999999998875
No 29
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=1.2e-31 Score=252.17 Aligned_cols=237 Identities=28% Similarity=0.539 Sum_probs=180.6
Q ss_pred eEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
+|||||||.|+||+|+ |...||||+|++|+ |||+|+|++|.++|++++++++.... .+++.+++.+......++.++
T Consensus 1 kavIla~G~GtRl~pl-t~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~-~~~i~~~~~~~~~~~~~i~~i 78 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPL-TDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYK-EEQIEEHLGSGYKFGVKIEYI 78 (248)
T ss_dssp EEEEEEESCCGGGTTT-TTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTT-HHHHHHHHTTSGGGTEEEEEE
T ss_pred CEEEECCCCCccCchh-hhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecc-cccccccccccccccccceee
Confidence 6999999999999999 99999999999999 99999999999999999666665332 346777776643223457788
Q ss_pred EccCCcChHHHHHHHHhcCCCCc----EEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817 83 TVPEDVGTAGALRAIAHHLTAKD----VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (456)
Q Consensus 83 ~~~~~~gt~~al~~~~~~l~~~~----~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~ 158 (456)
.++++.||+++++.+.+.+..+. |++++||++++.++.++++.|++.++++++.+...+..+
T Consensus 79 ~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------- 144 (248)
T PF00483_consen 79 VQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVED-------------- 144 (248)
T ss_dssp EESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSG--------------
T ss_pred ecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccc--------------
Confidence 78888999999999998887554 999999999999999999999999885444333333222
Q ss_pred CCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh---cCcccccccc
Q 012817 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD---QKDKFQSLKQ 235 (456)
Q Consensus 159 ~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~---~~~~~~s~~~ 235 (456)
++.||++.+|++++ +..+.| |+-. ...+.++++|+|+|++++|..+++ +......+..
T Consensus 145 -~~~~g~v~~d~~~~-V~~~~E-----KP~~------------~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (248)
T PF00483_consen 145 -PSRYGVVEVDEDGR-VIRIVE-----KPDN------------PNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLT 205 (248)
T ss_dssp -GGGSEEEEEETTSE-EEEEEE-----SCSS------------HSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHH
T ss_pred -cccceeeeecccee-EEEEec-----cCcc------------cccceeccCceEEEcchHHHHHhhhhhccchhhhHHH
Confidence 56799999998775 455543 3210 001668899999999999987743 3334566678
Q ss_pred chhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcc--hh
Q 012817 236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK--YC 313 (456)
Q Consensus 236 d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~--~~ 313 (456)
|+++.+++++. ...+| ...+ +|
T Consensus 206 d~i~~~~~~~~------------------------------------------------------~~~~~--~~~~~~~w 229 (248)
T PF00483_consen 206 DAIPKLLEQGK------------------------------------------------------KVYAF--IFEGNAYW 229 (248)
T ss_dssp HHHHHHHHTTC------------------------------------------------------EEEEE--EHSSEE-E
T ss_pred HHHHHHHHcCC------------------------------------------------------ceEEE--EecCCeEE
Confidence 99999887542 12233 2344 89
Q ss_pred hcccCHHHHHHHhHhhhc
Q 012817 314 VRLNSIQAFMDINRDVIG 331 (456)
Q Consensus 314 ~~i~~~~~y~~~~~~~l~ 331 (456)
.+++++++|++++++++.
T Consensus 230 ~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 230 IDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp EETSSHHHHHHHHHHHHS
T ss_pred EECCCHHHHHHHHHHHhc
Confidence 999999999999998864
No 30
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.97 E-value=1.6e-30 Score=242.19 Aligned_cols=228 Identities=21% Similarity=0.401 Sum_probs=176.6
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
|++||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++++|++++.. +.+.+++.++. ...++.+.
T Consensus 1 m~~iIlAaG~g~R~~~l-t~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~--~~~~~~l~~~~-~~~~~~i~ 76 (233)
T cd06425 1 MKALILVGGYGTRLRPL-TLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRP--EDMVPFLKEYE-KKLGIKIT 76 (233)
T ss_pred CcEEEecCCCccccCcc-ccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCH--HHHHHHHhccc-ccCCeEEE
Confidence 78999999999999999 8999999999999999999999999999999999998653 35556665431 12234444
Q ss_pred E--ccCCcChHHHHHHHHhcCCC--CcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817 83 T--VPEDVGTAGALRAIAHHLTA--KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (456)
Q Consensus 83 ~--~~~~~gt~~al~~~~~~l~~--~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~ 158 (456)
. +....|++++++.+.+.+.. +++++++||.+++.++.++++.|++.++++++++.+.+.
T Consensus 77 ~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 140 (233)
T cd06425 77 FSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED---------------- 140 (233)
T ss_pred eccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC----------------
Confidence 3 44568999999999888753 679999999999999999999999999999988876431
Q ss_pred CCCcccEEEecC-CCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccch
Q 012817 159 KPGRYNIIGMDP-TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDV 237 (456)
Q Consensus 159 ~~~~~~iv~~d~-~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d~ 237 (456)
+..|+++.+|+ +++ +..+.+ |+. ...++++++|+|+|++++|..+. . ...++..|+
T Consensus 141 -~~~~g~v~~d~~~~~-v~~~~e-----kp~-------------~~~~~~~~~Giyi~~~~~l~~l~-~--~~~~~~~~~ 197 (233)
T cd06425 141 -PSKYGVVVHDENTGR-IERFVE-----KPK-------------VFVGNKINAGIYILNPSVLDRIP-L--RPTSIEKEI 197 (233)
T ss_pred -ccccCeEEEcCCCCE-EEEEEE-----CCC-------------CCCCCEEEEEEEEECHHHHHhcc-c--Ccccchhhh
Confidence 45689999987 554 555543 211 11256789999999999997553 2 234566788
Q ss_pred hHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhccc
Q 012817 238 LPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLN 317 (456)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~ 317 (456)
++.+++++ ++.+| +..++|.+++
T Consensus 198 ~~~l~~~~-------------------------------------------------------~v~~~--~~~g~w~dig 220 (233)
T cd06425 198 FPKMASEG-------------------------------------------------------QLYAY--ELPGFWMDIG 220 (233)
T ss_pred HHHHHhcC-------------------------------------------------------CEEEE--eeCCEEEcCC
Confidence 99887532 23455 4578999999
Q ss_pred CHHHHHHHhHhhh
Q 012817 318 SIQAFMDINRDVI 330 (456)
Q Consensus 318 ~~~~y~~~~~~~l 330 (456)
++++|+++++.+|
T Consensus 221 t~~~~~~a~~~~l 233 (233)
T cd06425 221 QPKDFLKGMSLYL 233 (233)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999987653
No 31
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.97 E-value=2e-30 Score=244.97 Aligned_cols=230 Identities=24% Similarity=0.385 Sum_probs=172.9
Q ss_pred EEEEecC--CCCCCcCCCCCCCcccccccCCcchHHHHHHHHHH-CCCCEEEEEecCchhhHHHHhhhhhhc-cCccceE
Q 012817 5 VVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAY-VDRLHVE 80 (456)
Q Consensus 5 aiIlagG--~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~-~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~~~~i~ 80 (456)
||||||| .|+||+|+ |..+||||+|++|||||+|+|++|.+ +|+++++|++++.. +.+..++.+.. .....+.
T Consensus 1 ~iIla~G~~~GtRl~pl-t~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~--~~i~~~l~~~~~~~~~~i~ 77 (257)
T cd06428 1 AVILVGGPQKGTRFRPL-SLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPE--SVFSDFISDAQQEFNVPIR 77 (257)
T ss_pred CEEEccCCCCCcccCCc-cCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCH--HHHHHHHHhcccccCceEE
Confidence 6899999 89999999 99999999999999999999999999 69999999998642 35566654421 1123344
Q ss_pred EEEccCCcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817 81 VATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (456)
Q Consensus 81 ~~~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (456)
+..+.+..||+++++.+.+.+. +++|+|++||++++.++.++++.|++.++++|+++.+.+.++
T Consensus 78 ~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~------------- 144 (257)
T cd06428 78 YLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQ------------- 144 (257)
T ss_pred EecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccc-------------
Confidence 5445557899999999988774 367999999999999999999999999999998887653222
Q ss_pred CCCCcccEEEec-CCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC---------
Q 012817 158 KKPGRYNIIGMD-PTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK--------- 227 (456)
Q Consensus 158 ~~~~~~~iv~~d-~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~--------- 227 (456)
+..|+++.+| ++++ +..+.+ |+. ...++++++|+|+|++++|..+....
T Consensus 145 --~~~yg~v~~d~~~g~-v~~~~E-----kp~-------------~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~ 203 (257)
T cd06428 145 --ASNYGCIVEDPSTGE-VLHYVE-----KPE-------------TFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQL 203 (257)
T ss_pred --cccccEEEEeCCCCe-EEEEEe-----CCC-------------CcccceEEEEEEEECHHHHHHHhhhcccccccccc
Confidence 5578999888 4554 556654 211 11356899999999999986554211
Q ss_pred ---------ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCc
Q 012817 228 ---------DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRR 298 (456)
Q Consensus 228 ---------~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (456)
..+.++.+|+++.++++
T Consensus 204 ~~~~~~~~~~~~~~~~~d~~~~l~~~------------------------------------------------------ 229 (257)
T cd06428 204 GDDNNREGRAEVIRLEQDVLTPLAGS------------------------------------------------------ 229 (257)
T ss_pred ccccccccccceeeehhhhhhHHhcc------------------------------------------------------
Confidence 12233445777766542
Q ss_pred ceeeEEEEecCcchhhcccCHHHHHHHhHh
Q 012817 299 THKCCVYIASNSKYCVRLNSIQAFMDINRD 328 (456)
Q Consensus 299 ~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~ 328 (456)
.++.+| ...+||.+++++++|+++|+.
T Consensus 230 -~~v~~~--~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 230 -GKLYVY--KTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred -CCEEEe--cCCCeeecCCCHHHHHhHhhc
Confidence 123455 668999999999999999875
No 32
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.97 E-value=5.7e-30 Score=243.75 Aligned_cols=207 Identities=20% Similarity=0.332 Sum_probs=157.9
Q ss_pred CC-ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817 1 MD-FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (456)
Q Consensus 1 m~-~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i 79 (456)
|+ |+|||||||.|+||+|+ |...||||+|++|||||+|+|++|..+|+++|+|++.+.. .+.+++++.+......++
T Consensus 1 m~~~kaIILAgG~GtRL~Pl-T~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~-~~~~~~~l~~g~~~g~~i 78 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPV-TMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGLNL 78 (292)
T ss_pred CCceEEEEECCCcccccCcc-cCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCc-hHHHHHHHcCccccCcee
Confidence 65 99999999999999999 9999999999999999999999999999999998876442 245666665432223456
Q ss_pred EEEEccCCcChHHHHHHHHhcCCCCcEEEEcCC-cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817 80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (456)
Q Consensus 80 ~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D-~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~ 158 (456)
.+..++.+.|+++++..+.+.+.+++++++.|| ++++.++.++++.|.+.++++|+++++++
T Consensus 79 ~y~~q~~~~Gta~Al~~a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~----------------- 141 (292)
T PRK15480 79 QYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN----------------- 141 (292)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC-----------------
Confidence 677777789999999999998876678888899 45688999999999888888888877653
Q ss_pred CCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc--ccccccc
Q 012817 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK--FQSLKQD 236 (456)
Q Consensus 159 ~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~--~~s~~~d 236 (456)
+|.+||++.+|+++++ ..+.| |+. .+.++++++|+|+|+++++..+..-..+ .+-..+|
T Consensus 142 ~p~~yGvv~~d~~g~v-~~i~E-----KP~-------------~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd 202 (292)
T PRK15480 142 DPERYGVVEFDQNGTA-ISLEE-----KPL-------------QPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITD 202 (292)
T ss_pred CcccCcEEEECCCCcE-EEEEE-----CCC-------------CCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHH
Confidence 2668999999987764 45543 321 1247789999999999998754211111 1111257
Q ss_pred hhHHHhHhc
Q 012817 237 VLPYLVRSQ 245 (456)
Q Consensus 237 ~l~~l~~~~ 245 (456)
+++.+++++
T Consensus 203 ~~~~~l~~g 211 (292)
T PRK15480 203 INRIYMEQG 211 (292)
T ss_pred HHHHHHhcC
Confidence 888776643
No 33
>PRK10122 GalU regulator GalF; Provisional
Probab=99.97 E-value=5.1e-30 Score=245.38 Aligned_cols=238 Identities=15% Similarity=0.270 Sum_probs=174.6
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc--------
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-------- 73 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-------- 73 (456)
+|+|||||||.|+||+|+ |..+||||+|++|||||+|+++++.++|+++|+|++++.. +.+.+|+...+
T Consensus 3 ~mkavIlAaG~GtRl~Pl-T~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~--~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASK--NAVENHFDTSYELESLLEQ 79 (297)
T ss_pred ceEEEEECCcCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCh--HHHHHHHhcchhHHHHHhh
Confidence 589999999999999999 9999999999999999999999999999999999998653 35555553211
Q ss_pred --------------cCccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccC--------CChhHHHHHHHhcCc
Q 012817 74 --------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA 131 (456)
Q Consensus 74 --------------~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~--------~~l~~~l~~~~~~~a 131 (456)
.....+.++.++++.||+++++.+.+++.+++|+++.||.+++ .++.++++.|.+.++
T Consensus 80 ~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~ 159 (297)
T PRK10122 80 RVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred cchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHhCC
Confidence 0123456777778899999999999998767899999997765 479999999988887
Q ss_pred eEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEec----CCCc--EEEEeecccccccccccchHHHhhcceeEEec
Q 012817 132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQ--FLLHIATGAELEKDTRIRKSILRAVGQMDIRA 205 (456)
Q Consensus 132 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d----~~~~--~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 205 (456)
+++++ ...+. + +..||++.+| +++. .+..+.+ |+.. + ....+
T Consensus 160 ~~~~~-~~~~~-~---------------~~~yGvv~~d~~~~~~g~v~~I~~~~E-----Kp~~-~---------~~~~s 207 (297)
T PRK10122 160 SQVLA-KRMPG-D---------------LSEYSVIQTKEPLDREGKVSRIVEFIE-----KPDQ-P---------QTLDS 207 (297)
T ss_pred cEEEE-EECCC-C---------------CCCceEEEecCcccCCCCeeeEEEEEE-----CCCC-c---------ccCCc
Confidence 75443 33321 2 5679999986 3443 2344443 3210 0 01136
Q ss_pred CCccceEEeechHHHHHHHhcCc-c-ccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCccc
Q 012817 206 DLMDAHMYAFNRSVLQEVLDQKD-K-FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH 283 (456)
Q Consensus 206 ~~~~~giYi~~~~vl~~~~~~~~-~-~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (456)
+++++|+|+|++++|..+..... . .....+|+++.+++++
T Consensus 208 ~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~ltd~i~~l~~~~-------------------------------------- 249 (297)
T PRK10122 208 DLMAVGRYVLSADIWPELERTEPGAWGRIQLTDAIAELAKKQ-------------------------------------- 249 (297)
T ss_pred cEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHHHHHHHhCC--------------------------------------
Confidence 78999999999999986643111 1 1223358888876532
Q ss_pred ccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHHHHHHHhHhh-hc
Q 012817 284 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-IG 331 (456)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~-l~ 331 (456)
++.+| ...++|.+++++++|.+++.++ +.
T Consensus 250 -----------------~v~~~--~~~G~w~DiG~p~~~~~a~~~~~~~ 279 (297)
T PRK10122 250 -----------------SVDAM--LMTGDSYDCGKKMGYMQAFVKYGLR 279 (297)
T ss_pred -----------------CEEEE--EeCCEEEcCCCHHHHHHHHHHHHhc
Confidence 23455 4578999999999999999887 54
No 34
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=5.8e-30 Score=234.83 Aligned_cols=211 Identities=40% Similarity=0.650 Sum_probs=169.7
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-cCc--cce
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDR--LHV 79 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~~--~~i 79 (456)
|+|||||||.|+||+|+ +...||+|+|++|+|||+|+++++.++|+++++|++++.. .+.+++++.+.. ... ...
T Consensus 1 ~~aVILAgG~g~R~~pl-t~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~-~~~i~~~l~~~~~~~~~~~~~ 78 (214)
T cd04198 1 FQAVILAGGGGSRLYPL-TDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEE-QAEISTYLRSFPLNLKQKLDE 78 (214)
T ss_pred CEEEEEeCCCCCcCCcc-ccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHH-HHHHHHHHHhcccccCcceeE
Confidence 68999999999999999 8899999999999999999999999999999999998543 234566554321 011 112
Q ss_pred EEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCC
Q 012817 80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (456)
Q Consensus 80 ~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (456)
.+.......|++++++.+.+.+ .++|++++||++++.++.++++.|++.++.+|+++++.+..+... +.+.+.+.
T Consensus 79 ~~~~~~~~~gt~~al~~~~~~i-~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~----~~~~~~~~ 153 (214)
T cd04198 79 VTIVLDEDMGTADSLRHIRKKI-KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQK----GGKGKSKK 153 (214)
T ss_pred EEecCCCCcChHHHHHHHHhhc-CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCccccc----CCcccccC
Confidence 2222345689999999998887 578999999999999999999999999999999988765432111 11112233
Q ss_pred CCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHH
Q 012817 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (456)
Q Consensus 160 ~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl 220 (456)
+..+.++.+|++++.++++.+..+.+++..++..+++++|++.+++++.|+|+|+|++++|
T Consensus 154 ~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 154 ADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 4567899999999899999876677778888999999999999999999999999999874
No 35
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.97 E-value=2.9e-29 Score=234.75 Aligned_cols=233 Identities=19% Similarity=0.279 Sum_probs=172.0
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
|+|||||||.|+||+|+ |..+||||+|++|+|||+|+|+++.++|+++++++++... .+.+.+++.+.......+.+.
T Consensus 1 m~~iIlAaG~gtRl~pl-t~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~~l~~~~~~~~~i~~~ 78 (240)
T cd02538 1 MKGIILAGGSGTRLYPL-TKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPED-LPLFKELLGDGSDLGIRITYA 78 (240)
T ss_pred CeEEEEcCcCcccCCcc-ccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcch-HHHHHHHHhcccccCceEEEe
Confidence 68999999999999999 9999999999999999999999999999999999886432 235566664322122334444
Q ss_pred EccCCcChHHHHHHHHhcCCCCcEEEEcCCc-ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCC
Q 012817 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG 161 (456)
Q Consensus 83 ~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~-i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (456)
.++...|++++++.+.+.+.+++++++.||. +.+.++.++++.|.+.++++++++.+.+ + +.
T Consensus 79 ~~~~~~G~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~ 141 (240)
T cd02538 79 VQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN--D---------------PE 141 (240)
T ss_pred eCCCCCCHHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC--c---------------hh
Confidence 4455689999999999888767799999995 5567899999999888888888876643 1 45
Q ss_pred cccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC---ccccccccchh
Q 012817 162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK---DKFQSLKQDVL 238 (456)
Q Consensus 162 ~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~---~~~~s~~~d~l 238 (456)
.|+++.+|++++ +..+.+++. ...++++++|+|+|++++|+. +++. ........|++
T Consensus 142 ~~g~v~~d~~g~-v~~~~ekp~------------------~~~~~~~~~Giyi~~~~~l~~-l~~~~~~~~~~~~l~d~~ 201 (240)
T cd02538 142 RYGVVEFDENGR-VLSIEEKPK------------------KPKSNYAVTGLYFYDNDVFEI-AKQLKPSARGELEITDVN 201 (240)
T ss_pred cCceEEecCCCc-EEEEEECCC------------------CCCCCeEEEEEEEECHHHHHH-HHhcCCCCCCeEEhHHHH
Confidence 689999998775 455553211 112457899999999999864 4321 11112235888
Q ss_pred HHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcccC
Q 012817 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNS 318 (456)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~ 318 (456)
+.+++++. ..++..+..+||.++++
T Consensus 202 ~~l~~~g~-------------------------------------------------------~~~~~~~~~g~w~digt 226 (240)
T cd02538 202 NEYLEKGK-------------------------------------------------------LSVELLGRGFAWLDTGT 226 (240)
T ss_pred HHHHHhCC-------------------------------------------------------eEEEEeCCCcEEEeCCC
Confidence 88876431 12232244589999999
Q ss_pred HHHHHHHhHhh
Q 012817 319 IQAFMDINRDV 329 (456)
Q Consensus 319 ~~~y~~~~~~~ 329 (456)
+++|+++++.+
T Consensus 227 ~~~~~~a~~~~ 237 (240)
T cd02538 227 HESLLEASNFV 237 (240)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 36
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.97 E-value=4.4e-29 Score=237.38 Aligned_cols=203 Identities=20% Similarity=0.339 Sum_probs=155.2
Q ss_pred eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (456)
Q Consensus 4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 83 (456)
+|||||||.|+||+|+ |...||||+|++|||||+|+|+.+..+|+++++|++.... .+.+++++.+.....+++.+..
T Consensus 1 kaIILAgG~GtRL~pl-T~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~-~~~~~~~lg~g~~~g~~i~~~~ 78 (286)
T TIGR01207 1 KGIILAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGVNLSYAV 78 (286)
T ss_pred CEEEECCCCCccCCcc-cCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCc-HHHHHHHhccccccCceEEEEE
Confidence 5899999999999999 9999999999999999999999999999999998886432 2355666654322234566676
Q ss_pred ccCCcChHHHHHHHHhcCCCCcEEEEcCC-cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCc
Q 012817 84 VPEDVGTAGALRAIAHHLTAKDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (456)
Q Consensus 84 ~~~~~gt~~al~~~~~~l~~~~~lv~~~D-~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (456)
++++.|++++++.+.+.+.+++++++.|| .+++.++.++++.|.+.++++++++.+++ + |.+
T Consensus 79 q~~~~Gta~al~~a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~---------------p~~ 141 (286)
T TIGR01207 79 QPSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--D---------------PER 141 (286)
T ss_pred ccCCCCHHHHHHHHHHHhCCCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--C---------------HHH
Confidence 77789999999999999876778888999 45688999999999888888888887654 2 667
Q ss_pred ccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC-c--cccccccchhH
Q 012817 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-D--KFQSLKQDVLP 239 (456)
Q Consensus 163 ~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~-~--~~~s~~~d~l~ 239 (456)
||++.+|++++ +..+.| |+. ...++++++|+|+|++++++.+ .+. . ...-..+|+++
T Consensus 142 yGvv~~d~~g~-V~~i~E-----Kp~-------------~~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~eitdv~~ 201 (286)
T TIGR01207 142 YGVVEFDSNGR-AISIEE-----KPA-------------QPKSNYAVTGLYFYDNRVVEIA-RQLKPSARGELEITDLNR 201 (286)
T ss_pred CceEEECCCCe-EEEEEE-----CCC-------------CCCCCEEEEEEEEEchHHHHHH-hhcCCCCCCcEeHHHHHH
Confidence 99999998775 445543 321 1236789999999999997644 321 1 11112358888
Q ss_pred HHhHhc
Q 012817 240 YLVRSQ 245 (456)
Q Consensus 240 ~l~~~~ 245 (456)
.+++++
T Consensus 202 ~~l~~g 207 (286)
T TIGR01207 202 VYLEEG 207 (286)
T ss_pred HHHHcC
Confidence 877643
No 37
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=4.3e-29 Score=229.75 Aligned_cols=203 Identities=27% Similarity=0.445 Sum_probs=158.8
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCc-----c
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDR-----L 77 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~-----~ 77 (456)
|+|||||||.|+||+|+ |..+||||+|++|+|||+|+|++|.++|+++|+|++++. .+.+.+|+.+..... .
T Consensus 1 ~~aiIla~G~g~Rl~pl-t~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~--~~~i~~~l~~~~~~~~~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPL-TKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSH--SDQIKEYIEKSKWSKPKSSLM 77 (217)
T ss_pred CeEEEEcCCCccccccc-ccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCC--HHHHHHHHhhccccccccCcc
Confidence 68999999999999999 999999999999999999999999999999999999864 346777776532111 2
Q ss_pred ceEEEEccCCcChHHHHHHHH--hcCCCCcEEEEcCCcccCCChhHHHHHHHhc-----CceEEEEEeecccCCCccCCC
Q 012817 78 HVEVATVPEDVGTAGALRAIA--HHLTAKDVLVVSGDLVSDVPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGS 150 (456)
Q Consensus 78 ~i~~~~~~~~~gt~~al~~~~--~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~-----~a~~t~~~~~~~~~~~~~~~~ 150 (456)
.+.+...++..+++++++... ..+ .++|++++||++++.++.++++.|++. ++++|+++.+.+..+..
T Consensus 78 ~i~~~~~~~~~~~~~al~~~~~~~~~-~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~---- 152 (217)
T cd04197 78 IVIIIMSEDCRSLGDALRDLDAKGLI-RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRT---- 152 (217)
T ss_pred eEEEEeCCCcCccchHHHHHhhcccc-CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCcccc----
Confidence 355555566688999887653 334 478999999999999999999999884 88899888776532110
Q ss_pred CCCcccCCCCCcccEEEecCCCcEEEEeeccccccc--ccccchHHHhhcceeEEecCCccceEEeechHHH
Q 012817 151 SGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (456)
Q Consensus 151 ~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k--~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl 220 (456)
+....++++.+|+++..++++.+++...+ ...++..++.+++++.+++++.++|+|+|++++|
T Consensus 153 -------~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 153 -------RRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred -------ccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 01224678888877445667776554332 2457888899999999999999999999999875
No 38
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.97 E-value=1e-28 Score=232.35 Aligned_cols=225 Identities=19% Similarity=0.337 Sum_probs=171.8
Q ss_pred eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccC--cc----
Q 012817 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVD--RL---- 77 (456)
Q Consensus 4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~--~~---- 77 (456)
+|||||||.|+||+|+ |..+||||+|++|||||+|+++.+.++|+++|+|++++.. +.+.+++.+.... .+
T Consensus 1 kavilaaG~gtRl~~~-t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~ 77 (254)
T TIGR02623 1 KAVILAGGLGTRISEE-THLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKG--YVIKEYFANYFLHMSDVTFHM 77 (254)
T ss_pred CEEEEcCccccccCcc-ccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCH--HHHHHHHHhhhhcccCeeEEe
Confidence 5899999999999999 9999999999999999999999999999999999998653 3455555432110 11
Q ss_pred ---------------ceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeeccc
Q 012817 78 ---------------HVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142 (456)
Q Consensus 78 ---------------~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~ 142 (456)
.+.+..+.++.||+++++.+.+.+.+++|++++||.+++.++.++++.|.+.++++|+++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~--- 154 (254)
T TIGR02623 78 ADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDDEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ--- 154 (254)
T ss_pred cccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCCCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec---
Confidence 12233344558999999999998876789999999999999999999999999998876542
Q ss_pred CCCccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHH
Q 012817 143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE 222 (456)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~ 222 (456)
+ +..||++.+|+ + .+..+.+ |+.. .+.++++|+|+|++++|.
T Consensus 155 -~---------------~~~yG~v~~d~-~-~V~~~~E-----kp~~--------------~~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 155 -P---------------PGRFGALDLEG-E-QVTSFQE-----KPLG--------------DGGWINGGFFVLNPSVLD- 196 (254)
T ss_pred -C---------------CCcccEEEECC-C-eEEEEEe-----CCCC--------------CCCeEEEEEEEEcHHHHh-
Confidence 1 45689998885 4 4556653 3210 145789999999999995
Q ss_pred HHhcCccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceee
Q 012817 223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC 302 (456)
Q Consensus 223 ~~~~~~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (456)
.++.. ..++.+|+++.+++++ ++
T Consensus 197 ~l~~~--~~~~~~d~i~~l~~~~-------------------------------------------------------~v 219 (254)
T TIGR02623 197 LIDGD--ATVWEQEPLETLAQRG-------------------------------------------------------EL 219 (254)
T ss_pred hcccc--CchhhhhHHHHHHhCC-------------------------------------------------------CE
Confidence 44432 2356789999987642 23
Q ss_pred EEEEecCcchhhcccCHHHHHHHhHhhhc
Q 012817 303 CVYIASNSKYCVRLNSIQAFMDINRDVIG 331 (456)
Q Consensus 303 ~~yi~~~~~~~~~i~~~~~y~~~~~~~l~ 331 (456)
.+| ...+||.+++++++|.+++..+-.
T Consensus 220 ~~~--~~~g~w~dIgt~~~~~~~~~~~~~ 246 (254)
T TIGR02623 220 SAY--EHSGFWQPMDTLRDKNYLEELWES 246 (254)
T ss_pred EEE--eCCCEEecCCchHHHHHHHHHHHc
Confidence 345 457899999999999888876643
No 39
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.96 E-value=2.9e-28 Score=231.67 Aligned_cols=235 Identities=17% Similarity=0.281 Sum_probs=168.9
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-c-------
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V------- 74 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~------- 74 (456)
|+|||||||.|+||+|+ |..+||||+|++|||||+|+|+++.++|+++++|++++.. +.+..++.+.+ .
T Consensus 1 mkaiIlAaG~gtRl~pl-t~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~ 77 (267)
T cd02541 1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGK--RAIEDHFDRSYELEETLEKK 77 (267)
T ss_pred CeEEEEcCCCCccCCCc-ccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCch--HHHHHHhCCcHHHHHHHHhc
Confidence 68999999999999999 9999999999999999999999999999999999998653 34444443211 0
Q ss_pred -------------CccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCC---ChhHHHHHHHhcCceEEEEEe
Q 012817 75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC 138 (456)
Q Consensus 75 -------------~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~a~~t~~~~ 138 (456)
....+.+..++...|++++++.+.+.+..+++++++||.++.. ++.++++.|++.++++ +++.
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 156 (267)
T cd02541 78 GKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVE 156 (267)
T ss_pred ccHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEE
Confidence 0223445555667999999999999887678999999965543 4999999998877664 4444
Q ss_pred ecccCCCccCCCCCCcccCCCCCcccEEEecCC---CcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEee
Q 012817 139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT---KQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF 215 (456)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~---~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~ 215 (456)
..+.+ ++..|+++.+|++ ...+..+.+++..+ ...+.++++|+|+|
T Consensus 157 ~~~~~---------------~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~----------------~~~~~~~~~Giyi~ 205 (267)
T cd02541 157 EVPPE---------------DVSKYGIVKGEKIDGDVFKVKGLVEKPKPE----------------EAPSNLAIVGRYVL 205 (267)
T ss_pred EcChh---------------cCccceEEEeecCCCCceEEeEEEECCCCC----------------CCCCceEEEEEEEc
Confidence 43321 1456899999862 22455665422110 11356789999999
Q ss_pred chHHHHHHHhcCc--cccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCC
Q 012817 216 NRSVLQEVLDQKD--KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGS 293 (456)
Q Consensus 216 ~~~vl~~~~~~~~--~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (456)
++++|..+..... .......|+++++++.+
T Consensus 206 ~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~------------------------------------------------ 237 (267)
T cd02541 206 TPDIFDILENTKPGKGGEIQLTDAIAKLLEEE------------------------------------------------ 237 (267)
T ss_pred CHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC------------------------------------------------
Confidence 9999876643111 11122347777776532
Q ss_pred CCCCcceeeEEEEecCcchhhcccCHHHHHHHhHhh
Q 012817 294 APVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (456)
Q Consensus 294 ~~~~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~ 329 (456)
++.+| ...+||.+++++++|+++++++
T Consensus 238 -------~v~~~--~~~g~w~digt~~~y~~a~~~~ 264 (267)
T cd02541 238 -------PVYAY--VFEGKRYDCGNKLGYLKATVEF 264 (267)
T ss_pred -------CEEEE--EeeeEEEeCCCHHHHHHHHHHH
Confidence 23455 4468999999999999999986
No 40
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.96 E-value=1.2e-27 Score=223.41 Aligned_cols=233 Identities=20% Similarity=0.321 Sum_probs=174.5
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
|+|||||||.|+||+|+ +...||+|+|++|+|||+|+++++.++|+++++|+++.. .+.+.+++.+.......+.++
T Consensus 1 m~avIlAaG~g~Rl~pl-t~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~--~~~~~~~~~~~~~~~~~i~~~ 77 (236)
T cd04189 1 MKGLILAGGKGTRLRPL-TYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPT--GEEIKEALGDGSRFGVRITYI 77 (236)
T ss_pred CeEEEECCCcccccccc-ccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCC--HHHHHHHhcchhhcCCeEEEE
Confidence 78999999999999999 889999999999999999999999999999999999864 345666665432122345555
Q ss_pred EccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCc
Q 012817 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (456)
Q Consensus 83 ~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (456)
.+....|++++++.+...+.++++++++||.+++.++.++++.|.+.++++++++.+.+ + +..
T Consensus 78 ~~~~~~g~~~sl~~a~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~~ 140 (236)
T cd04189 78 LQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE--D---------------PRR 140 (236)
T ss_pred ECCCCCChHHHHHHHHHhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC--C---------------ccc
Confidence 55556899999999998886578999999999999999999999998888888776643 1 456
Q ss_pred ccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc--cccccccchhHH
Q 012817 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD--KFQSLKQDVLPY 240 (456)
Q Consensus 163 ~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~--~~~s~~~d~l~~ 240 (456)
|+++.+|++ .+..+.+ |+. ...+.+.++|+|+|++++|..+..... .......|+++.
T Consensus 141 ~g~~~~d~~--~v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~ 200 (236)
T cd04189 141 FGVAVVDDG--RIVRLVE-----KPK-------------EPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQW 200 (236)
T ss_pred ceEEEEcCC--eEEEEEE-----CCC-------------CCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHH
Confidence 788888743 4445442 211 112457899999999999875522111 111112577887
Q ss_pred HhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHH
Q 012817 241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ 320 (456)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~ 320 (456)
+++++ .++.+| +..++|.++++++
T Consensus 201 ~i~~g------------------------------------------------------~~v~~~--~~~~~~~~i~t~~ 224 (236)
T cd04189 201 LIDRG------------------------------------------------------RRVGYS--IVTGWWKDTGTPE 224 (236)
T ss_pred HHHcC------------------------------------------------------CcEEEE--EcCceEEeCCCHH
Confidence 77543 223444 4467899999999
Q ss_pred HHHHHhHhhhc
Q 012817 321 AFMDINRDVIG 331 (456)
Q Consensus 321 ~y~~~~~~~l~ 331 (456)
+|.++++.+++
T Consensus 225 dl~~a~~~~l~ 235 (236)
T cd04189 225 DLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 41
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.96 E-value=6.2e-28 Score=228.54 Aligned_cols=206 Identities=16% Similarity=0.263 Sum_probs=147.3
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhcc--------
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-------- 74 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~-------- 74 (456)
|+|||||||.|+||+|+ |..+||||+|++|||||+|+|+++.++|+++++|++++.. +.+.+|+.+.+.
T Consensus 1 m~avIlAaG~gtRl~pl-t~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~--~~i~~~~~~~~~~~~~~~~~ 77 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGK--RAIEDHFDTSYELEHQLEKR 77 (260)
T ss_pred CeEEEEcccCcccCCCc-ccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcH--HHHHHHhcccHHHHHHHHhh
Confidence 68999999999999999 9999999999999999999999999999999999998663 345555432110
Q ss_pred -------------CccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCC---ChhHHHHHHHhcCceEEEEEe
Q 012817 75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC 138 (456)
Q Consensus 75 -------------~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~a~~t~~~~ 138 (456)
....+.+..+....|++++++.+.+.+.++++++++||.++.. ++.++++.|.+.++++ +++.
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~ 156 (260)
T TIGR01099 78 GKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVE 156 (260)
T ss_pred hhHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEE
Confidence 0122344445567899999999998886678999999966543 7999999999888876 4444
Q ss_pred ecccCCCccCCCCCCcccCCCCCcccEEEecC---CCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEee
Q 012817 139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP---TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF 215 (456)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~---~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~ 215 (456)
..+.++ +..|+++.+|. ++..+..+.+++..+ ...++++++|+|+|
T Consensus 157 ~~~~~~---------------~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~----------------~~~~~~~~~Giyi~ 205 (260)
T TIGR01099 157 EVPKEE---------------VSKYGVIDGEGVEEGLYEIKDMVEKPKPE----------------EAPSNLAIVGRYVL 205 (260)
T ss_pred ECChhh---------------cccCceEEeccccCCceeEEEEEECCCCC----------------CCCCceEEEEEEEC
Confidence 433212 56789998873 323455665432101 11356789999999
Q ss_pred chHHHHHHHhcCcc--ccccccchhHHHhH
Q 012817 216 NRSVLQEVLDQKDK--FQSLKQDVLPYLVR 243 (456)
Q Consensus 216 ~~~vl~~~~~~~~~--~~s~~~d~l~~l~~ 243 (456)
++++|..+.....+ ......|+++.+++
T Consensus 206 ~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~ 235 (260)
T TIGR01099 206 TPDIFDLLEETPPGAGGEIQLTDALRKLLE 235 (260)
T ss_pred CHHHHHHHHhCCCCCCCceeHHHHHHHHHh
Confidence 99998866432211 11223477777765
No 42
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.96 E-value=8.4e-28 Score=222.03 Aligned_cols=194 Identities=18% Similarity=0.275 Sum_probs=146.2
Q ss_pred eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (456)
Q Consensus 4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 83 (456)
+|||||||.|+||+|+ |..+||+|+|++|+|||+|+|++|.++|+++|+|++++. .+.+.+++.+ ......+.+..
T Consensus 1 kaiIlaaG~g~Rl~pl-t~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~-~~~~~~i~~~~ 76 (221)
T cd06422 1 KAMILAAGLGTRMRPL-TDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHL--ADQIEAHLGD-SRFGLRITISD 76 (221)
T ss_pred CEEEEcCCCCCccccc-cCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCC--HHHHHHHHhc-ccCCceEEEec
Confidence 5899999999999999 999999999999999999999999999999999999865 3456666654 11122333433
Q ss_pred cc-CCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHH--hcCceEEEEEeecccCCCccCCCCCCcccCCCC
Q 012817 84 VP-EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHR--RHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP 160 (456)
Q Consensus 84 ~~-~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~--~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (456)
+. +..|++++++.+++.+.++++++++||++++.++.++++.|. +.++.+++...+.+ + +
T Consensus 77 ~~~~~~g~~~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~ 139 (221)
T cd06422 77 EPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP--G---------------H 139 (221)
T ss_pred CCCcccccHHHHHHHHHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC--C---------------C
Confidence 33 457999999999998866789999999999999999999998 45666666554432 1 4
Q ss_pred CcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccchhHH
Q 012817 161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240 (456)
Q Consensus 161 ~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d~l~~ 240 (456)
..|+++.+|+++++ ..+. +++ ...++++|+|+|++++|..+... ....+|+++.
T Consensus 140 ~~~g~v~~d~~~~v-~~~~-----~~~----------------~~~~~~~Giyi~~~~~l~~l~~~----~~~~~d~~~~ 193 (221)
T cd06422 140 NGVGDFSLDADGRL-RRGG-----GGA----------------VAPFTFTGIQILSPELFAGIPPG----KFSLNPLWDR 193 (221)
T ss_pred CCcceEEECCCCcE-eecc-----cCC----------------CCceEEEEEEEEcHHHHhhCCcC----cccHHHHHHH
Confidence 56788888877653 3332 221 12578999999999999765322 1223578888
Q ss_pred HhHh
Q 012817 241 LVRS 244 (456)
Q Consensus 241 l~~~ 244 (456)
++++
T Consensus 194 l~~~ 197 (221)
T cd06422 194 AIAA 197 (221)
T ss_pred HHHc
Confidence 7753
No 43
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.96 E-value=2.6e-27 Score=227.04 Aligned_cols=232 Identities=13% Similarity=0.227 Sum_probs=170.1
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhcc--------
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-------- 74 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~-------- 74 (456)
|+|||+|||.|+||+|+ |..+||+|+|++|||||+|+|+++.++|+++++|++++.. +.+.+++.+.+.
T Consensus 9 ~~aiIlaaG~g~Rl~~~-t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPA-TKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSK--NSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred eEEEEECCcCCccCCCc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCH--HHHHHHHccchhhhhhhhhh
Confidence 78999999999999999 9999999999999999999999999999999999998653 345555543110
Q ss_pred --------------CccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccC--------CChhHHHHHHHhcCce
Q 012817 75 --------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDAV 132 (456)
Q Consensus 75 --------------~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~--------~~l~~~l~~~~~~~a~ 132 (456)
....+.+..+.+..|++++++.+.+.+.+++|+++.||.+++ .++.++++.|.+.+++
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~ 165 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS 165 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence 012244455566799999999998888667899999997653 7999999999888776
Q ss_pred EEEEEeecccCCCccCCCCCCcccCCCCCcccEEEecCC----C--cEEEEeecccccccccccchHHHhhcceeEEecC
Q 012817 133 VTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT----K--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRAD 206 (456)
Q Consensus 133 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~----~--~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 206 (456)
++++...+ + +..||++..|.. + ..+..+.|++..+ ...++
T Consensus 166 -tl~~~~~~--~---------------~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~----------------~~~s~ 211 (302)
T PRK13389 166 -QIMVEPVA--D---------------VTAYGVVDCKGVELAPGESVPMVGVVEKPKAD----------------VAPSN 211 (302)
T ss_pred -EEEEEEcc--c---------------CCcceEEEecCcccccCCcceEEEEEECCCCC----------------CCCcc
Confidence 56555442 2 567899988641 1 2355555422100 11356
Q ss_pred CccceEEeechHHHHHHHhcCc---cccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCccc
Q 012817 207 LMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH 283 (456)
Q Consensus 207 ~~~~giYi~~~~vl~~~~~~~~---~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (456)
++++|+|+|++++|. +++... ..+.+.+|+++++++++
T Consensus 212 ~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~-------------------------------------- 252 (302)
T PRK13389 212 LAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKE-------------------------------------- 252 (302)
T ss_pred EEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcC--------------------------------------
Confidence 799999999999985 443321 12233468888887532
Q ss_pred ccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHHHHHHHhHhh
Q 012817 284 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (456)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~ 329 (456)
++.+| ...++|.+++++++|.+++.++
T Consensus 253 -----------------~v~~~--~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 253 -----------------TVEAY--HMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred -----------------CEEEE--EeeeEEEeCCCHHHHHHHHHHH
Confidence 23345 4578999999999999998875
No 44
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.95 E-value=4.5e-27 Score=221.52 Aligned_cols=225 Identities=18% Similarity=0.314 Sum_probs=168.1
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccC--ccce---
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVD--RLHV--- 79 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~--~~~i--- 79 (456)
|||||||.|+||+|+ |..+||||+|++|+|||+|+++.+..+|+++++|++++.. +.+.+++.+.... .+.+
T Consensus 1 aiilaaG~g~Rl~pl-t~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~~ 77 (253)
T cd02524 1 VVILAGGLGTRLSEE-TELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKG--HVIKEYFLNYFLHNSDVTIDLG 77 (253)
T ss_pred CEEEecCCccccCCc-cCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCH--HHHHHHHHhhhhhcCceeEeec
Confidence 699999999999999 9999999999999999999999999999999999998653 4566666543211 1111
Q ss_pred ----------------EEEEccCCcChHHHHHHHHhcCCC-CcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeeccc
Q 012817 80 ----------------EVATVPEDVGTAGALRAIAHHLTA-KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142 (456)
Q Consensus 80 ----------------~~~~~~~~~gt~~al~~~~~~l~~-~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~ 142 (456)
.++......+++++++.+.+.+.+ ++|++++||.+++.++.++++.|...++++|+++.. +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~-~- 155 (253)
T cd02524 78 TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH-P- 155 (253)
T ss_pred ccceeeecccccccceeecccCcccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec-C-
Confidence 111112246789999999998865 789999999999999999999999989988876642 1
Q ss_pred CCCccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHH
Q 012817 143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE 222 (456)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~ 222 (456)
+..|+++.+|+++++ ..+.+ |+. ..+.++++|+|+|++++|..
T Consensus 156 -----------------~~~~g~v~~d~~g~V-~~~~e-----kp~--------------~~~~~i~~Giyi~~~~l~~~ 198 (253)
T cd02524 156 -----------------PGRFGELDLDDDGQV-TSFTE-----KPQ--------------GDGGWINGGFFVLEPEVFDY 198 (253)
T ss_pred -----------------CCcccEEEECCCCCE-EEEEE-----CCC--------------CCCceEEEEEEEECHHHHHh
Confidence 345788999987764 44432 211 01346889999999999865
Q ss_pred HHhcCccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceee
Q 012817 223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC 302 (456)
Q Consensus 223 ~~~~~~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (456)
+... ..++..|+++.+++++ ++
T Consensus 199 l~~~---~~~~~~d~l~~li~~~-------------------------------------------------------~v 220 (253)
T cd02524 199 IDGD---DTVFEREPLERLAKDG-------------------------------------------------------EL 220 (253)
T ss_pred hccc---cchhhHHHHHHHHhcC-------------------------------------------------------CE
Confidence 5322 2344568888887642 22
Q ss_pred EEEEecCcchhhcccCHHHHHHHhHhhhc
Q 012817 303 CVYIASNSKYCVRLNSIQAFMDINRDVIG 331 (456)
Q Consensus 303 ~~yi~~~~~~~~~i~~~~~y~~~~~~~l~ 331 (456)
.+| ...+||.+++++.+|.++...+..
T Consensus 221 ~~~--~~~g~w~~I~t~~~~~~~~~~~~~ 247 (253)
T cd02524 221 MAY--KHTGFWQCMDTLRDKQTLEELWNS 247 (253)
T ss_pred EEE--ecCCEEEeCcCHHHHHHHHHHHHc
Confidence 344 456799999999999988866543
No 45
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=4.5e-27 Score=215.88 Aligned_cols=206 Identities=33% Similarity=0.506 Sum_probs=154.0
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhcc----Cccc
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV----DRLH 78 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~----~~~~ 78 (456)
|+|||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++++|++++... .+..++.+... ....
T Consensus 1 ~~avIlagg~g~rl~pl-t~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPL-TSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQ--AIIEHLLKSKWSSLSSKMI 77 (216)
T ss_pred CeEEEEeCCCccccCcc-ccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHH--HHHHHHHhcccccccCCce
Confidence 68999999999999999 89999999999999999999999999999999999986643 34444433211 1112
Q ss_pred eEEEE--ccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHH--HHhcCceEEEEEeecccCCCccCCCCCCc
Q 012817 79 VEVAT--VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAA--HRRHDAVVTAMICSVPVSGLSEAGSSGAK 154 (456)
Q Consensus 79 i~~~~--~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~--~~~~~a~~t~~~~~~~~~~~~~~~~~~~~ 154 (456)
+.+.. +.+..|++++++.+.+.+ .++|++++||++++.++.+++++ +...++++++.+...+......
T Consensus 78 v~~~~~~~~~~~Gta~~l~~~~~~i-~~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~------- 149 (216)
T cd02507 78 VDVITSDLCESAGDALRLRDIRGLI-RSDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTE------- 149 (216)
T ss_pred EEEEEccCCCCCccHHHHHHHhhcC-CCCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCcc-------
Confidence 33332 334689999999998888 57899999999999999999965 4445566665555544322110
Q ss_pred ccCCCCCcccEEEecCCC--cEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHH
Q 012817 155 DKTKKPGRYNIIGMDPTK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (456)
Q Consensus 155 ~~~~~~~~~~iv~~d~~~--~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl 220 (456)
..+....++++.+|+++ .+++++.+..+..+...++..+++++|++.+++++.|+|+|+|++++|
T Consensus 150 -~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 150 -QSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred -ccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 00124567899999987 445566554433333445899999999999999999999999999874
No 46
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.95 E-value=1.6e-26 Score=213.30 Aligned_cols=194 Identities=22% Similarity=0.418 Sum_probs=145.0
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 84 (456)
|||||||.|+||+|+ +.+.||+|+|++|+|||+|+|++|.++|+++++|++++. .+.+.+++.+.......+.+..+
T Consensus 1 ~vIlaaG~g~R~~pl-t~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~~~~~~~~i~~~~~ 77 (220)
T cd06426 1 VVIMAGGKGTRLRPL-TENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYL--AEMIEDYFGDGSKFGVNISYVRE 77 (220)
T ss_pred CEEecCCCccccCcc-cCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccC--HHHHHHHHCCccccCccEEEEEC
Confidence 689999999999999 999999999999999999999999999999999999865 33566665442111233444444
Q ss_pred cCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCccc
Q 012817 85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN 164 (456)
Q Consensus 85 ~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (456)
+.+.|+++++..+.+.. ++++++++||++++.++..+++.|+..++++++++..... +..|+
T Consensus 78 ~~~~g~~~~l~~~~~~~-~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~g 139 (220)
T cd06426 78 DKPLGTAGALSLLPEKP-TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-----------------QVPYG 139 (220)
T ss_pred CCCCcchHHHHHHHhhC-CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC-----------------CCcce
Confidence 45689999998776655 5789999999999999999999999888888887765321 34588
Q ss_pred EEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccchhHHHhHh
Q 012817 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS 244 (456)
Q Consensus 165 iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d~l~~l~~~ 244 (456)
++..|+ ++ +..+.+ |+. .+.++++|+|+|+++++..+ .+.. ..+ ..|+++.++++
T Consensus 140 ~~~~d~-~~-v~~~~e-----k~~---------------~~~~~~~Giy~~~~~~~~~i-~~~~-~~~-l~~~~~~~i~~ 194 (220)
T cd06426 140 VVETEG-GR-ITSIEE-----KPT---------------HSFLVNAGIYVLEPEVLDLI-PKNE-FFD-MPDLIEKLIKE 194 (220)
T ss_pred EEEECC-CE-EEEEEE-----CCC---------------CCCeEEEEEEEEcHHHHhhc-CCCC-CcC-HHHHHHHHHHC
Confidence 888885 44 445542 211 13567899999999998754 3222 122 35778777654
No 47
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.95 E-value=1.3e-26 Score=213.41 Aligned_cols=200 Identities=29% Similarity=0.494 Sum_probs=153.7
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 84 (456)
|||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++++|++++. .+.+.+++.+.......+.+..+
T Consensus 1 aiIlaaG~g~R~~~~-t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~--~~~i~~~~~~~~~~~~~i~~~~~ 77 (217)
T cd04181 1 AVILAAGKGTRLRPL-TDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYL--GEQIEEYFGDGSKFGVNIEYVVQ 77 (217)
T ss_pred CEEecCCcccccccc-ccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHcChhhcCceEEEEeC
Confidence 689999999999999 899999999999999999999999999999999999864 33566665442211233555555
Q ss_pred cCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCccc
Q 012817 85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN 164 (456)
Q Consensus 85 ~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (456)
+...|++++++.+++.+.++++++++||++++.++.++++.|.+.++++++++.+.+ + +..|+
T Consensus 78 ~~~~g~~~al~~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~~~~ 140 (217)
T cd04181 78 EEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--D---------------PSRYG 140 (217)
T ss_pred CCCCccHHHHHHhhhhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--C---------------CCcce
Confidence 556899999999998886678999999999999999999999999999888887643 1 55688
Q ss_pred EEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc-cccccccchhHHHhH
Q 012817 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-KFQSLKQDVLPYLVR 243 (456)
Q Consensus 165 iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~-~~~s~~~d~l~~l~~ 243 (456)
++.+|++++ +..+.+ |+. ...+.++++|+|+|++++|+. +++.. ...++..|+++.+++
T Consensus 141 ~v~~d~~~~-v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~~~~~~~l~~ 200 (217)
T cd04181 141 VVELDDDGR-VTRFVE-----KPT-------------LPESNLANAGIYIFEPEILDY-IPEILPRGEDELTDAIPLLIE 200 (217)
T ss_pred EEEEcCCCc-EEEEEE-----CCC-------------CCCCCEEEEEEEEECHHHHHh-hhhcCCcccccHHHHHHHHHh
Confidence 999988765 445543 211 001467899999999999854 44321 224556688888775
Q ss_pred h
Q 012817 244 S 244 (456)
Q Consensus 244 ~ 244 (456)
+
T Consensus 201 ~ 201 (217)
T cd04181 201 E 201 (217)
T ss_pred c
Confidence 3
No 48
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.95 E-value=2.1e-26 Score=212.85 Aligned_cols=198 Identities=30% Similarity=0.477 Sum_probs=149.2
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 84 (456)
|||||||.|+||+|+ +...||+|+|++|+|||+|+++++.++|+++++|++++.. +.+.+++.+.......+.+...
T Consensus 1 aiIlaaG~g~R~~~~-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~--~~i~~~~~~~~~~~~~~~~~~~ 77 (223)
T cd06915 1 AVILAGGLGTRLRSV-VKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLA--EQIEEYFGDGYRGGIRIYYVIE 77 (223)
T ss_pred CEEecCCcccccCcc-cCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCH--HHHHHHHcCccccCceEEEEEC
Confidence 699999999999999 8999999999999999999999999999999999997542 3555555432111122334444
Q ss_pred cCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCccc
Q 012817 85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN 164 (456)
Q Consensus 85 ~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (456)
....|++++++.+++.+.++++++++||++++.++.++++.|++.++++++++.+.+. +..|+
T Consensus 78 ~~~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 140 (223)
T cd06915 78 PEPLGTGGAIKNALPKLPEDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-----------------ASRYG 140 (223)
T ss_pred CCCCcchHHHHHHHhhcCCCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC-----------------CCcce
Confidence 5568999999999998866889999999988899999999998888888877766431 34578
Q ss_pred EEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccchhHHHhHh
Q 012817 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS 244 (456)
Q Consensus 165 iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d~l~~l~~~ 244 (456)
.+.+|++++ +..+.+ |+. ...+.++++|+|+|++++|..+... ..++.+|+++++++.
T Consensus 141 ~v~~d~~~~-v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~l~~~~~~---~~~~~~~~~~~l~~~ 198 (223)
T cd06915 141 NVTVDGDGR-VIAFVE-----KGP-------------GAAPGLINGGVYLLRKEILAEIPAD---AFSLEADVLPALVKR 198 (223)
T ss_pred eEEECCCCe-EEEEEe-----CCC-------------CCCCCcEEEEEEEECHHHHhhCCcc---CCChHHHHHHHHHhc
Confidence 888887765 445542 211 0135678999999999999755322 234556888877653
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.92 E-value=6.7e-24 Score=197.34 Aligned_cols=197 Identities=17% Similarity=0.253 Sum_probs=139.9
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhh-HHHHhhhhhhccCccceEEEE
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA-LRVGGWISAAYVDRLHVEVAT 83 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~-~~i~~~~~~~~~~~~~i~~~~ 83 (456)
+||||||.|+||+|+ |...||||+|++|+|||+|+|+.+.++|+++++++++..... +++..++... ..++.+..
T Consensus 1 ~iIlAaG~g~Rl~pl-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~---~~~~~i~~ 76 (231)
T cd04183 1 IIIPMAGLGSRFKKA-GYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL---APNATVVE 76 (231)
T ss_pred CEEECCcCCcccccc-CCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh---CCCCEEEE
Confidence 489999999999999 899999999999999999999999999999999998633211 2333333221 11233333
Q ss_pred -ccCCcChHHHHHHHHhcCC-CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCC
Q 012817 84 -VPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG 161 (456)
Q Consensus 84 -~~~~~gt~~al~~~~~~l~-~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (456)
+....|++++++.++..+. +++|++++||.+++.++.+++++|.+.+++.++++.... ..
T Consensus 77 ~~~~~~g~~~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------~~ 138 (231)
T cd04183 77 LDGETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS------------------HP 138 (231)
T ss_pred eCCCCCcHHHHHHHHHhhcCCCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC------------------CC
Confidence 3456899999999998885 477999999999999999999988877777766655431 33
Q ss_pred cccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechH-HHHHHHhc----Cc-cc-cccc
Q 012817 162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS-VLQEVLDQ----KD-KF-QSLK 234 (456)
Q Consensus 162 ~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~-vl~~~~~~----~~-~~-~s~~ 234 (456)
.|+++.+|+++++ ..+.+ |+. .+.++++|+|+|+++ +|...++. .. .. ....
T Consensus 139 ~~~~v~~d~~~~v-~~~~e-----k~~---------------~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 197 (231)
T cd04183 139 RWSYVKLDENGRV-IETAE-----KEP---------------ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYI 197 (231)
T ss_pred CeEEEEECCCCCE-EEeEE-----cCC---------------CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEE
Confidence 5888889887764 33432 211 245789999999987 55444331 10 11 1123
Q ss_pred cchhHHHhHh
Q 012817 235 QDVLPYLVRS 244 (456)
Q Consensus 235 ~d~l~~l~~~ 244 (456)
.|+++.++++
T Consensus 198 ~d~i~~~~~~ 207 (231)
T cd04183 198 SPLYNELILD 207 (231)
T ss_pred hHHHHHHHHc
Confidence 5777777654
No 50
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.7e-23 Score=187.10 Aligned_cols=209 Identities=15% Similarity=0.247 Sum_probs=152.8
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhh--HHH------Hhhhhhh--
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA--LRV------GGWISAA-- 72 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~--~~i------~~~~~~~-- 72 (456)
.+|||+|||.|+||-|. |...||-|||+.+||+|+|+++.+..+|+++++++++...++ +|+ ...+...
T Consensus 5 rKAViPaAGlGTRfLPA-TKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K 83 (291)
T COG1210 5 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGK 83 (291)
T ss_pred cEEEEEccCcccccccc-cccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCH
Confidence 68999999999999999 999999999999999999999999999999999999754332 121 1111110
Q ss_pred -------c--cCccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCC---ChhHHHHHHHhcCceEEEEEeec
Q 012817 73 -------Y--VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMICSV 140 (456)
Q Consensus 73 -------~--~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~a~~t~~~~~~ 140 (456)
. .....+.++.|.+++|.++|+++|.+.+.+++|.|+.+|.+... .+..|++.+.+.+..+ +.+.++
T Consensus 84 ~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~sv-i~v~ev 162 (291)
T COG1210 84 RELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSV-IGVEEV 162 (291)
T ss_pred HHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcE-EEEEEC
Confidence 0 12234667778889999999999999999999999999965543 4888999999888865 445566
Q ss_pred ccCCCccCCCCCCcccCCCCCcccEEE----ecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeec
Q 012817 141 PVSGLSEAGSSGAKDKTKKPGRYNIIG----MDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFN 216 (456)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~iv~----~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~ 216 (456)
+.++ .++||++. .+.+-..+..++|++. .-+.+|+++..|-|+++
T Consensus 163 ~~e~---------------v~kYGvi~~g~~~~~~~~~v~~~VEKP~----------------~~~APSnlai~GRYil~ 211 (291)
T COG1210 163 PPED---------------VSKYGVIDPGEPVEKGVYKVKGMVEKPK----------------PEEAPSNLAIVGRYVLT 211 (291)
T ss_pred CHHH---------------CcccceEecCccccCCeEEEEEEEECCC----------------CCCCCcceeeeeeeecC
Confidence 5433 56799987 2222123444443221 12447999999999999
Q ss_pred hHHHHHHHhcCc--cccccccchhHHHhHh
Q 012817 217 RSVLQEVLDQKD--KFQSLKQDVLPYLVRS 244 (456)
Q Consensus 217 ~~vl~~~~~~~~--~~~s~~~d~l~~l~~~ 244 (456)
+++|..+-.... ..+-+.+|.+..|++.
T Consensus 212 p~IFd~L~~~~~G~ggEiQLTDai~~L~~~ 241 (291)
T COG1210 212 PEIFDILEETKPGAGGEIQLTDAIKKLLKK 241 (291)
T ss_pred HHHHHHHhhCCCCCCCEeeHHHHHHHHHhh
Confidence 999975533211 2334457888888764
No 51
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.91 E-value=4.5e-24 Score=193.86 Aligned_cols=168 Identities=21% Similarity=0.334 Sum_probs=129.8
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCc-----cc
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDR-----LH 78 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~-----~~ 78 (456)
|||||||.|+||+|+ |.+.||+|+|++|+ |||+|+++++.++|+++++|++++. .+.+.+++.+..... ..
T Consensus 1 avILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~--~~~i~~~~~~~~~~~~~~~~~~ 77 (200)
T cd02508 1 AIILAGGEGTRLSPL-TKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYK--SRSLNDHLGSGKEWDLDRKNGG 77 (200)
T ss_pred CEEeCCCCCcccchh-hcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCC--hHHHHHHHhCCCcccCCCCCCC
Confidence 689999999999999 88999999999998 9999999999999999999999866 345666664321111 11
Q ss_pred eEEEE------ccCCcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCC
Q 012817 79 VEVAT------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAG 149 (456)
Q Consensus 79 i~~~~------~~~~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~ 149 (456)
+.+.. ++.+.||+++++.+.+.+. +++|++++||.+++.++.++++.|+++++++|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~----------- 146 (200)
T cd02508 78 LFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK----------- 146 (200)
T ss_pred EEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-----------
Confidence 33332 1345899999999988774 367999999999999999999999888777665320
Q ss_pred CCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC--
Q 012817 150 SSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-- 227 (456)
Q Consensus 150 ~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~-- 227 (456)
+++|+|+|++++|..+++..
T Consensus 147 ----------------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~ 168 (200)
T cd02508 147 ----------------------------------------------------------ASMGIYIFSKDLLIELLEEDAA 168 (200)
T ss_pred ----------------------------------------------------------hcCEEEEEEHHHHHHHHHHHhc
Confidence 36699999999987665431
Q ss_pred ccccccccchhHHHhHh
Q 012817 228 DKFQSLKQDVLPYLVRS 244 (456)
Q Consensus 228 ~~~~s~~~d~l~~l~~~ 244 (456)
....++.+|+++.++++
T Consensus 169 ~~~~~~~~d~i~~l~~~ 185 (200)
T cd02508 169 DGSHDFGKDIIPAMLKK 185 (200)
T ss_pred cCcchhHHHHHHHHhcc
Confidence 12345667899888753
No 52
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.91 E-value=1.6e-23 Score=198.79 Aligned_cols=193 Identities=21% Similarity=0.223 Sum_probs=137.8
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCC-cchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~g-kpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
|++||||||.|+||||+|....||+|+|++| +|||+|+++++... ++++++|+++... .+.+++++.+. ...+.
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~-~~~v~~~l~~~---~~~~~ 76 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEY-RFLVREQLPEG---LPEEN 76 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHH-HHHHHHHHhhc---CCCce
Confidence 6899999999999999944589999999999 99999999999998 4999999998543 23555555441 12356
Q ss_pred EEEccCCcChHHHHHHHHhcCC----CCcEEEEcCCcccC--CChhHHHHHHHh---cCceEEEEEeecccCCCccCCCC
Q 012817 81 VATVPEDVGTAGALRAIAHHLT----AKDVLVVSGDLVSD--VPPGAVTAAHRR---HDAVVTAMICSVPVSGLSEAGSS 151 (456)
Q Consensus 81 ~~~~~~~~gt~~al~~~~~~l~----~~~~lv~~~D~i~~--~~l~~~l~~~~~---~~a~~t~~~~~~~~~~~~~~~~~ 151 (456)
++.++..+||++++..+...+. ++.++|++||++.. .++.++++.+.+ .++.+|+.+.+...
T Consensus 77 ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~--------- 147 (274)
T cd02509 77 IILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRP--------- 147 (274)
T ss_pred EEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCC---------
Confidence 7767778999999988866553 35689999997765 457677765543 56677776654321
Q ss_pred CCcccCCCCCcccEEEecCCC----cEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhc
Q 012817 152 GAKDKTKKPGRYNIIGMDPTK----QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (456)
Q Consensus 152 ~~~~~~~~~~~~~iv~~d~~~----~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~ 226 (456)
.+.||++..+++. ..+..+.|+++.+ ..+.++. ....++|+|+|+|++++|...+++
T Consensus 148 --------~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~----~a~~~~~------~g~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 148 --------ETGYGYIEAGEKLGGGVYRVKRFVEKPDLE----TAKEYLE------SGNYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred --------CCCeEEEEeCCcCCCCceEEeEEEECcChH----HHHHHhh------cCCeEEECceeeeeHHHHHHHHHH
Confidence 4579999998653 1456666543221 1112211 123478999999999988777643
No 53
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.91 E-value=6.4e-23 Score=190.46 Aligned_cols=194 Identities=19% Similarity=0.259 Sum_probs=134.9
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 84 (456)
|||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++++|++++. .+.+.+++.+. .++.++..
T Consensus 1 aiIlAaG~g~Rl~~l-t~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~--~~~~~~~~~~~----~~~~~~~~ 73 (229)
T cd02523 1 AIILAAGRGSRLRPL-TEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYK--KEQIEELLKKY----PNIKFVYN 73 (229)
T ss_pred CEEEeccCccccchh-hCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccC--HHHHHHHHhcc----CCeEEEeC
Confidence 689999999999999 899999999999999999999999999999999999865 34566655432 23556654
Q ss_pred cC--CcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCc
Q 012817 85 PE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (456)
Q Consensus 85 ~~--~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (456)
+. ..|++++++.+.+++ ++++++++||++++. ++++.|.+.++++++++.+..... ...
T Consensus 74 ~~~~~~g~~~s~~~~~~~~-~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 134 (229)
T cd02523 74 PDYAETNNIYSLYLARDFL-DEDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEW---------------EDE 134 (229)
T ss_pred cchhhhCcHHHHHHHHHHc-CCCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccc---------------ccc
Confidence 44 479999999999888 578999999988754 577778888888888776522111 223
Q ss_pred ccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc------cccccccc
Q 012817 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD------KFQSLKQD 236 (456)
Q Consensus 163 ~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~------~~~s~~~d 236 (456)
+++...|. ++ +..+.+ ++.. .....+.++|+|+|+++++..+.+... ....+.+|
T Consensus 135 ~~~~~~~~-~~-v~~~~~-----k~~~------------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 195 (229)
T cd02523 135 YVKDLDDA-GV-LLGIIS-----KAKN------------LEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYED 195 (229)
T ss_pred ceeeecCc-cc-eEeecc-----cCCC------------cchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHH
Confidence 33332232 32 333322 2100 012356899999999999876543211 12233456
Q ss_pred hhHHHhH
Q 012817 237 VLPYLVR 243 (456)
Q Consensus 237 ~l~~l~~ 243 (456)
+++.+++
T Consensus 196 ~i~~l~~ 202 (229)
T cd02523 196 ALQRLIS 202 (229)
T ss_pred HHHHHHh
Confidence 7776654
No 54
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.87 E-value=8.3e-21 Score=192.83 Aligned_cols=193 Identities=19% Similarity=0.187 Sum_probs=131.0
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCC-cchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccc-eE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH-VE 80 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~g-kpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~-i~ 80 (456)
|.+||||||.|+||||+|....||+|+|+.| +|||+|++++|...++++++|+++... ...+.+++.+. ..+ .+
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~-~~~~~~~l~~~---~~~~~~ 76 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEH-RFIVAEQLREI---GKLASN 76 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHH-HHHHHHHHHHc---CCCcce
Confidence 6799999999999999944458999999977 899999999999989999999887432 22344444332 112 34
Q ss_pred EEEccCCcChHHHHHHHHhcC----CCC-cEEEEcCCcccC--CChhHHHHHH---HhcCceEEEEEeecccCCCccCCC
Q 012817 81 VATVPEDVGTAGALRAIAHHL----TAK-DVLVVSGDLVSD--VPPGAVTAAH---RRHDAVVTAMICSVPVSGLSEAGS 150 (456)
Q Consensus 81 ~~~~~~~~gt~~al~~~~~~l----~~~-~~lv~~~D~i~~--~~l~~~l~~~---~~~~a~~t~~~~~~~~~~~~~~~~ 150 (456)
++.++..+||++++..+...+ ..+ .++|++||++.. ..|.++++++ .+.++.+|+...+..
T Consensus 77 ~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~--------- 147 (468)
T TIGR01479 77 IILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTH--------- 147 (468)
T ss_pred EEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCC---------
Confidence 666777899999887664443 334 489999996543 3488888765 334555555544321
Q ss_pred CCCcccCCCCCcccEEEecCC----C-cEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817 151 SGAKDKTKKPGRYNIIGMDPT----K-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (456)
Q Consensus 151 ~~~~~~~~~~~~~~iv~~d~~----~-~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~ 225 (456)
....||++..++. + ..+..+.|+++. ...+.++. ..+.++|+|||+|+.+.|...+.
T Consensus 148 --------p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~----~~a~~~l~------~g~~~wNsGif~~~~~~ll~~l~ 209 (468)
T TIGR01479 148 --------PETGYGYIRRGEPLAGEDVYQVQRFVEKPDL----ATAQAYLE------SGDYYWNSGMFLFRASRYLAELK 209 (468)
T ss_pred --------CCCCceEEEeCCccCCCCceEEeEEEECCCh----HHHHHHHh------cCCeEEEeeEEEEEHHHHHHHHH
Confidence 1467999998842 1 345666653322 11222221 12358999999999998876664
Q ss_pred c
Q 012817 226 Q 226 (456)
Q Consensus 226 ~ 226 (456)
+
T Consensus 210 ~ 210 (468)
T TIGR01479 210 K 210 (468)
T ss_pred H
Confidence 3
No 55
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.87 E-value=1.7e-20 Score=174.22 Aligned_cols=198 Identities=27% Similarity=0.377 Sum_probs=141.3
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 84 (456)
|||||||.|+||++ ..||+|+|++|||||+|+++++.++++++++|+++.. .+.+.+++.+ .++.++..
T Consensus 1 aiIlaaG~g~R~~~----~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~--~~~i~~~~~~-----~~~~~~~~ 69 (229)
T cd02540 1 AVILAAGKGTRMKS----DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHG--AEQVKKALAN-----PNVEFVLQ 69 (229)
T ss_pred CEEEeCCCCccCCC----CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhCC-----CCcEEEEC
Confidence 69999999999953 5899999999999999999999999999999999755 2355555533 23556666
Q ss_pred cCCcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCC
Q 012817 85 PEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP 160 (456)
Q Consensus 85 ~~~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (456)
+...|++++++.++..+. .+.++++.||. +...++.++++.|.+.++++++.+.+.. + +
T Consensus 70 ~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~---------------p 132 (229)
T cd02540 70 EEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE--D---------------P 132 (229)
T ss_pred CCCCCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcC--C---------------C
Confidence 666899999999998875 46799999995 5567899999999887777776665432 2 4
Q ss_pred CcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----cccccccc
Q 012817 161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQD 236 (456)
Q Consensus 161 ~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s~~~d 236 (456)
..|+.+..|+++++ ..+.++. ... +.+ ....++++|+|+|+++.|.++++... ....+..|
T Consensus 133 ~~~~~~~~~~~~~v-~~~~ek~----~~~-~~~---------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d 197 (229)
T cd02540 133 TGYGRIIRDGNGKV-LRIVEEK----DAT-EEE---------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTD 197 (229)
T ss_pred CCccEEEEcCCCCE-EEEEECC----CCC-hHH---------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHH
Confidence 56787777776654 3443211 110 000 01356899999999887766554321 11223467
Q ss_pred hhHHHhHhc
Q 012817 237 VLPYLVRSQ 245 (456)
Q Consensus 237 ~l~~l~~~~ 245 (456)
+++.+++.+
T Consensus 198 ~~~~~~~~g 206 (229)
T cd02540 198 IIALAVADG 206 (229)
T ss_pred HHHHHHHCC
Confidence 787777643
No 56
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=2.2e-19 Score=165.71 Aligned_cols=194 Identities=22% Similarity=0.241 Sum_probs=131.2
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCC-cchHHHHHHHHHH-CCCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~g-kpli~~~l~~l~~-~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i 79 (456)
+|..||||||.|+||||||....||||+++.| +.|++.+++++.. .+..+++++|++.. ...+++.+.+........
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~-~f~v~eql~e~~~~~~~~ 79 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKY-RFIVKEQLPEIDIENAAG 79 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHH-HHHHHHHHhhhhhccccc
Confidence 47899999999999999999999999999955 8999999999987 66899999998543 334555554422222222
Q ss_pred EEEEccCCcChHHHHHHHHhcCC----CCcEEEEcCCcccCC--ChhHHHHHHHh---cCceEEEEEeecccCCCccCCC
Q 012817 80 EVATVPEDVGTAGALRAIAHHLT----AKDVLVVSGDLVSDV--PPGAVTAAHRR---HDAVVTAMICSVPVSGLSEAGS 150 (456)
Q Consensus 80 ~~~~~~~~~gt~~al~~~~~~l~----~~~~lv~~~D~i~~~--~l~~~l~~~~~---~~a~~t~~~~~~~~~~~~~~~~ 150 (456)
+..++..+.|+.++..+.-.+. +.-++|++.|++... .+.+.++...+ .+..+|....+ +.|
T Consensus 80 -illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~P---t~P----- 150 (333)
T COG0836 80 -IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPP---TRP----- 150 (333)
T ss_pred -eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCC---CCC-----
Confidence 6777888999998876643322 224899999976654 25555554332 34444443332 222
Q ss_pred CCCcccCCCCCcccEEEecC-----CCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHH
Q 012817 151 SGAKDKTKKPGRYNIIGMDP-----TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL 224 (456)
Q Consensus 151 ~~~~~~~~~~~~~~iv~~d~-----~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~ 224 (456)
.+.||++...+ ....+..++|+++ ....+.++++ -..+||+|+|+|+.+++.+-+
T Consensus 151 ---------eTGYGYIe~G~~~~~~~~~~V~~FvEKPd----~etA~~yv~s------G~y~WNSGmF~Fra~~~l~e~ 210 (333)
T COG0836 151 ---------ETGYGYIETGESIAENGVYKVDRFVEKPD----LETAKKYVES------GEYLWNSGMFLFRASVFLEEL 210 (333)
T ss_pred ---------ccCcceeecCcccccCCceEeeeeeeCCC----HHHHHHHHHc------CceEeeccceEEEHHHHHHHH
Confidence 46899998754 2445556665433 2333444432 236899999999998875544
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.83 E-value=5.7e-19 Score=165.02 Aligned_cols=182 Identities=20% Similarity=0.254 Sum_probs=120.9
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
++.+||||+|.|+|| .||+|+|++|||||+|+++.+.++ ++++++|++++ +.+.+++.+. ++.
T Consensus 1 ~~~~iIlA~g~s~R~-------~~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~----~~i~~~~~~~-----~~~ 64 (239)
T cd02517 1 KVIVVIPARYASSRL-------PGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD----ERIADAVESF-----GGK 64 (239)
T ss_pred CEEEEEecCCCCCCC-------CCCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc----HHHHHHHHHc-----CCE
Confidence 367999999999999 279999999999999999999998 89999998864 2455555432 234
Q ss_pred EEEcc--CCcChHHHHHHHHhcCCC--CcEEEEcCC--cccCCChhHHHHHHHhc-CceEEEEEeecccCCCccCCCCCC
Q 012817 81 VATVP--EDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSGA 153 (456)
Q Consensus 81 ~~~~~--~~~gt~~al~~~~~~l~~--~~~lv~~~D--~i~~~~l~~~l~~~~~~-~a~~t~~~~~~~~~~~~~~~~~~~ 153 (456)
++... ...|+++ +..+.+.+.. +.++++.|| ++...+++.+++.|... ++++++++.+.+. +...
T Consensus 65 ~~~~~~~~~~gt~~-~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~----- 136 (239)
T cd02517 65 VVMTSPDHPSGTDR-IAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISD--EEEL----- 136 (239)
T ss_pred EEEcCcccCchhHH-HHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCC--HHHc-----
Confidence 44332 2457765 5555555653 569999999 46677899999988776 6777777765432 1100
Q ss_pred cccCCCCCcccEEEecCCCcEEEEeeccccc-ccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAEL-EKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (456)
Q Consensus 154 ~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~ 225 (456)
.+...++ +..|+++.+ ..+.+.... +++.. ...+.++++|+|+|++++|..+..
T Consensus 137 ----~~~~~~~-v~~~~~~~v-~~~~~~~~~~~~~~~------------~~~~~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 137 ----FNPNVVK-VVLDKDGYA-LYFSRSPIPYPRDSS------------EDFPYYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred ----cCCCCCE-EEECCCCCE-EEecCCCCCCCCCCC------------CCCceeEEEEEEEECHHHHHHHHh
Confidence 0122334 456666654 344321100 01000 112467899999999999987754
No 58
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.82 E-value=1.8e-18 Score=162.32 Aligned_cols=186 Identities=18% Similarity=0.247 Sum_probs=121.8
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
|++.+||||+|.|+|| . +|+|+|++|+|||+|+++.|.++++++++|+++.. .+.+++.+. ++.
T Consensus 1 m~~~~iIlA~g~S~R~----~---~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~~----~i~~~~~~~-----~~~ 64 (245)
T PRK05450 1 MKFLIIIPARYASTRL----P---GKPLADIGGKPMIVRVYERASKAGADRVVVATDDE----RIADAVEAF-----GGE 64 (245)
T ss_pred CceEEEEecCCCCCCC----C---CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCcH----HHHHHHHHc-----CCE
Confidence 8899999999999999 2 69999999999999999999999999999988632 344444331 233
Q ss_pred EEE--ccCCcChHHHHHHHHhcC---CCCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCC
Q 012817 81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (456)
Q Consensus 81 ~~~--~~~~~gt~~al~~~~~~l---~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~ 153 (456)
+.. .+...|++.... +...+ ..+.++++.||. +....++++++.|+.+++++++++.+... +..
T Consensus 65 v~~~~~~~~~gt~~~~~-~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~--~~~------ 135 (245)
T PRK05450 65 VVMTSPDHPSGTDRIAE-AAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHD--AEE------ 135 (245)
T ss_pred EEECCCcCCCchHHHHH-HHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCC--HHH------
Confidence 333 233456655433 33333 234589999994 55678999999988776666665544321 110
Q ss_pred cccCCCCCcccEEEecCCCcEEEEeecccccc-cccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELE-KDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (456)
Q Consensus 154 ~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~-k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~ 225 (456)
..++..++++ +|+++++ .++.++...+ ++.. +.-...+++.++|+|+|++++|..+.+
T Consensus 136 ---~~~~~~~~v~-~d~~g~v-~~~~e~~~~~~~~~~---------~~~~~~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 136 ---AFNPNVVKVV-LDADGRA-LYFSRAPIPYGRDAF---------ADSAPTPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred ---hcCcCCCEEE-eCCCCcE-EEecCCCCCCCCCcc---------ccccCccccEEEEEEecCHHHHHHHHh
Confidence 1135567765 8877764 4444322111 0000 000123688999999999999987754
No 59
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.79 E-value=4.2e-18 Score=171.33 Aligned_cols=195 Identities=18% Similarity=0.153 Sum_probs=129.8
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCC-cchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~g-kpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i 79 (456)
|+|.+||||||.|+||||+|....||||+|++| +|||+++++++...++.+.+|+++.. ..+.+++++.+.. ....
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~-~~~~v~~ql~~~~--~~~~ 80 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQ-HRFIVAEQLRQLN--KLTE 80 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHH-HHHHHHHHHHhcC--Cccc
Confidence 678999999999999999955568999999966 79999999999988888888888743 3446666664421 1123
Q ss_pred EEEEccCCcChHHHHHHHHhcC----C--CCcEEEEcCCcccCCC--hhHHHHHHHh---cCceEEEEEeecccCCCccC
Q 012817 80 EVATVPEDVGTAGALRAIAHHL----T--AKDVLVVSGDLVSDVP--PGAVTAAHRR---HDAVVTAMICSVPVSGLSEA 148 (456)
Q Consensus 80 ~~~~~~~~~gt~~al~~~~~~l----~--~~~~lv~~~D~i~~~~--l~~~l~~~~~---~~a~~t~~~~~~~~~~~~~~ 148 (456)
+++.++..++|+.++..|...+ . +..++|+++|++.... |.+.++...+ .+..+|+...+. .|
T Consensus 81 ~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt---~P--- 154 (478)
T PRK15460 81 NIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPD---LP--- 154 (478)
T ss_pred cEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCC---CC---
Confidence 6777788899998876553322 1 2348899999765432 5555444322 245555444332 22
Q ss_pred CCCCCcccCCCCCcccEEEecCC-------C-cEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHH
Q 012817 149 GSSGAKDKTKKPGRYNIIGMDPT-------K-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (456)
Q Consensus 149 ~~~~~~~~~~~~~~~~iv~~d~~-------~-~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl 220 (456)
.+.|||+..++. + ..+..+.|+++ ....+.++.. -..+||+|||+|+.+.|
T Consensus 155 -----------eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd----~~tA~~yl~~------G~y~WNsGiF~~~a~~~ 213 (478)
T PRK15460 155 -----------ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPN----LETAQAYVAS------GEYYWNSGMFLFRAGRY 213 (478)
T ss_pred -----------CCCCCeEEeCCccccccccCceEeeEEEeCCC----HHHHHHHHHc------CCEEEecceeheeHHHH
Confidence 467999987643 1 23555654333 2233344331 24589999999999987
Q ss_pred HHHHh
Q 012817 221 QEVLD 225 (456)
Q Consensus 221 ~~~~~ 225 (456)
..-++
T Consensus 214 l~~~~ 218 (478)
T PRK15460 214 LEELK 218 (478)
T ss_pred HHHHH
Confidence 65543
No 60
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.79 E-value=7.4e-18 Score=157.42 Aligned_cols=181 Identities=20% Similarity=0.285 Sum_probs=117.8
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i 79 (456)
|++.|||||+|.|+|| . +|+|+|++|||||+|+++.+.++ ++++++|++++. .+.+++.+. ++
T Consensus 1 m~~~aiIlA~g~s~R~----~---~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~~----~i~~~~~~~-----~~ 64 (238)
T PRK13368 1 MKVVVVIPARYGSSRL----P---GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQ----RIEDAVEAF-----GG 64 (238)
T ss_pred CcEEEEEecCCCCCCC----C---CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECChH----HHHHHHHHc-----CC
Confidence 7888999999999999 2 59999999999999999999998 799999998642 445544332 23
Q ss_pred EEEEcc--CCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCc-eEEEEEeecccCCCccCCCCCCc
Q 012817 80 EVATVP--EDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA-VVTAMICSVPVSGLSEAGSSGAK 154 (456)
Q Consensus 80 ~~~~~~--~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a-~~t~~~~~~~~~~~~~~~~~~~~ 154 (456)
.+.... ...|++ .+..+.+.+..+.++++.|| ++...++.++++.+.+.+. .++.++.+.+... .
T Consensus 65 ~v~~~~~~~~~g~~-~~~~a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~--~------- 134 (238)
T PRK13368 65 KVVMTSDDHLSGTD-RLAEVMLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEE--E------- 134 (238)
T ss_pred eEEecCccCCCccH-HHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHH--H-------
Confidence 333322 234665 46667666655679999999 6778889999998876543 4555554433110 0
Q ss_pred ccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHH
Q 012817 155 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV 223 (456)
Q Consensus 155 ~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~ 223 (456)
..++..+++ .+++++++ ..+.+.. +.. -++. ...+.+.++|+|+|++++|..+
T Consensus 135 --~~~p~~~~~-~~~~~g~v-~~~~~~~---~~~-~~~~--------~~~~~~~n~giy~~~~~~l~~~ 187 (238)
T PRK13368 135 --FESPNVVKV-VVDKNGDA-LYFSRSP---IPS-RRDG--------ESARYLKHVGIYAFRRDVLQQF 187 (238)
T ss_pred --hcCcCCCEE-EECCCCCE-EEeeCCC---CCC-CCCC--------CCCceeEEEEEEEeCHHHHHHH
Confidence 001333444 44555653 3443211 100 0000 0113478999999999999865
No 61
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=5e-16 Score=137.94 Aligned_cols=114 Identities=22% Similarity=0.334 Sum_probs=90.4
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~ 81 (456)
.|+|||||||.|+||.| +.||+|+.++||++|+|++++|.++|++++++|++.. ..+.++.++.+.. +..++
T Consensus 3 ~~kavILAAG~GsRlg~----~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~-~~~lve~~l~~~~---~~~~i 74 (239)
T COG1213 3 PMKAVILAAGFGSRLGP----DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGY-RADLVEEFLKKYP---FNAKI 74 (239)
T ss_pred ceeEEEEecccccccCC----CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccc-hHHHHHHHHhcCC---cceEE
Confidence 58999999999999965 6899999999999999999999999999999999422 2346677776542 24566
Q ss_pred EEccCC--cChHHHHHHHHhcCCCCcEEEEcCCcccCCC-hhHHHH
Q 012817 82 ATVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTA 124 (456)
Q Consensus 82 ~~~~~~--~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~-l~~~l~ 124 (456)
+..+.+ .+++.+|+.|.+++. +.|+++++|+++... ++.+++
T Consensus 75 v~N~~y~ktN~~~Sl~~akd~~~-~~fii~~sD~vye~~~~e~l~~ 119 (239)
T COG1213 75 VINSDYEKTNTGYSLLLAKDYMD-GRFILVMSDHVYEPSILERLLE 119 (239)
T ss_pred EeCCCcccCCceeEEeeehhhhc-CcEEEEeCCEeecHHHHHHHHh
Confidence 665554 466899999999885 669999999988654 333443
No 62
>PLN02917 CMP-KDO synthetase
Probab=99.66 E-value=5.6e-15 Score=141.03 Aligned_cols=182 Identities=13% Similarity=0.142 Sum_probs=115.6
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCC-CEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNI-KDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi-~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i 79 (456)
|++.+||||+|.|+|| . +|+|+|++|+|||+|+++.+..++. +.++|.+. . +.+..++.+. ++
T Consensus 46 ~~i~aIIpA~G~SsR~----~---~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~-~---e~I~~~~~~~-----~v 109 (293)
T PLN02917 46 SRVVGIIPARFASSRF----E---GKPLVHILGKPMIQRTWERAKLATTLDHIVVATD-D---ERIAECCRGF-----GA 109 (293)
T ss_pred CcEEEEEecCCCCCCC----C---CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECC-h---HHHHHHHHHc-----CC
Confidence 5678999999999999 2 5999999999999999999998764 55444433 2 3455544321 23
Q ss_pred EEEEc--cCCcChHHHHHHHHhcCC--CCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCC
Q 012817 80 EVATV--PEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (456)
Q Consensus 80 ~~~~~--~~~~gt~~al~~~~~~l~--~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~ 153 (456)
.++.. ....|++++ ..+++.+. .+.++++.|| ++....++.+++.+.+. +++.+++.-.+. ++
T Consensus 110 ~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~-~~-------- 178 (293)
T PLN02917 110 DVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSL-KP-------- 178 (293)
T ss_pred EEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeec-CH--------
Confidence 34433 334577665 46666664 3569999999 67778899999988654 333332221111 11
Q ss_pred cccCCCCCcccEEE--ecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHH
Q 012817 154 KDKTKKPGRYNIIG--MDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV 223 (456)
Q Consensus 154 ~~~~~~~~~~~iv~--~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~ 223 (456)
+++..|+.+. .|++|+.+.+.+.....+++....+ ..-.+.++|+|.|+.+.|..+
T Consensus 179 ----~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~----------~~i~~~n~Giy~f~~~~L~~l 236 (293)
T PLN02917 179 ----EDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNP----------QFPYLLHLGIQSYDAKFLKIY 236 (293)
T ss_pred ----HHhcCCCceEEEECCCCeEEEeecCcCCcCCCccccc----------ccceEEEEEEEEeCHHHHHHH
Confidence 1255677774 7877766654433222233211000 012467999999999999844
No 63
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.65 E-value=1.7e-15 Score=139.12 Aligned_cols=138 Identities=19% Similarity=0.246 Sum_probs=105.3
Q ss_pred cCcchhhcccCHHHHHHHhHhhhccccccC-CCcc-cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEEC
Q 012817 308 SNSKYCVRLNSIQAFMDINRDVIGEANHLS-GYNF-SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIG 384 (456)
Q Consensus 308 ~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~-~~~~-~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig 384 (456)
...+||.++ ++|+++++++|....... .... .....+++.++.|++++.+.+++.||++|.|++++.|. +++||
T Consensus 44 ~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG 120 (231)
T TIGR03532 44 VLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIG 120 (231)
T ss_pred EEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEEC
Confidence 356899999 899999999987543100 0000 11112345556666666666667777777777777666 47999
Q ss_pred CCCEECCCcEEe-CeEECCCCEECCCcEEc---------CeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817 385 RHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ---------GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 385 ~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~---------~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~ 448 (456)
++|.|++++.|. +++|+++|.||.++.|. +++|+++|.||.+++| .+++||++++|++++.+..
T Consensus 121 ~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~ 195 (231)
T TIGR03532 121 EGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTE 195 (231)
T ss_pred CCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 999999999997 89999999999999997 4899999999999988 5899999999999998754
No 64
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.63 E-value=6.1e-15 Score=129.21 Aligned_cols=106 Identities=25% Similarity=0.409 Sum_probs=65.7
Q ss_pred ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-------
Q 012817 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ------- 413 (456)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~------- 413 (456)
.+.++.+|++++.|++++.|++++.|+++|.|++++.|.+|+|++++.|++++.+.+|+|++++.|++++.+.
T Consensus 31 ~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~ 110 (163)
T cd05636 31 YIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDDK 110 (163)
T ss_pred EEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcCCc
Confidence 3334555566666666666666666666666666666666666666666666666666666666666666652
Q ss_pred ------------------CeEECCCCEECCCcEec-CeEECCCCEECCCcEE
Q 012817 414 ------------------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY 446 (456)
Q Consensus 414 ------------------~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~ 446 (456)
+++|++++.||.++.|. ++.|++++.|++|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV 162 (163)
T cd05636 111 PVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV 162 (163)
T ss_pred ceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence 35666666666666554 5666666666666554
No 65
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.62 E-value=1.2e-14 Score=127.36 Aligned_cols=111 Identities=19% Similarity=0.296 Sum_probs=97.4
Q ss_pred ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECC
Q 012817 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS 419 (456)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~ 419 (456)
.+.+..++++++.|++++.|.++++|+++|.|++++.|+ +++||++|.|++++.|.+|+|++++.|++++.+.+++|++
T Consensus 13 ~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~ 92 (163)
T cd05636 13 TIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGE 92 (163)
T ss_pred EECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECC
Confidence 444678888999999999998999999999999999998 5999999999999999999999999999999999999999
Q ss_pred CCEECCCcEec-------------------------CeEECCCCEECCCcEEcCCee
Q 012817 420 NAQLQERVALK-------------------------DCQVGQGYVVSAGCEYKGESL 451 (456)
Q Consensus 420 ~~~I~~~~~i~-------------------------~~~i~~~~~v~~~~~~~~~~~ 451 (456)
++.|++++++. +++|++++.|+.++.+.....
T Consensus 93 ~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ 149 (163)
T cd05636 93 NVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVK 149 (163)
T ss_pred CCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcE
Confidence 99999999873 477888888888777664444
No 66
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.61 E-value=5e-15 Score=129.43 Aligned_cols=118 Identities=28% Similarity=0.439 Sum_probs=94.1
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 84 (456)
+||||||.|+|| +.||+|+|++|+|||+|+++.+.++++++|+|++++. ++..++.. .++.++..
T Consensus 1 ~vILa~G~s~Rm------g~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~~----~~~~~~~~-----~~~~~v~~ 65 (160)
T PF12804_consen 1 AVILAAGKSSRM------GGPKALLPIGGKPLIERVLEALREAGVDDIVVVTGEE----EIYEYLER-----YGIKVVVD 65 (160)
T ss_dssp EEEEESSSCGGG------TSCGGGSEETTEEHHHHHHHHHHHHTESEEEEEESTH----HHHHHHTT-----TTSEEEE-
T ss_pred CEEECCcCcccC------CCCccceeECCccHHHHHHHHhhccCCceEEEecChH----HHHHHHhc-----cCceEEEe
Confidence 699999999999 3599999999999999999999999999999999863 33333322 24666655
Q ss_pred cC-CcChHHHHHHHHhcC-CCCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEE
Q 012817 85 PE-DVGTAGALRAIAHHL-TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMI 137 (456)
Q Consensus 85 ~~-~~gt~~al~~~~~~l-~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~ 137 (456)
+. ..|+.++++.++..+ ..+++++++||+ +....+..+++.+.+.++++.+..
T Consensus 66 ~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 66 PEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred ccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 43 489999999999988 678899999996 445679999999887777765543
No 67
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=7e-15 Score=125.02 Aligned_cols=103 Identities=23% Similarity=0.404 Sum_probs=84.6
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
|+|||||||.|+||.|+ |...||+|+.+.|+|||++.|+.|.++|+.+++||+++.. +++ .|+.+. .++.++
T Consensus 1 ~nAIIlAAG~gsR~~pl-T~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlk--E~F-eYLkdK----y~vtLv 72 (231)
T COG4750 1 MNAIILAAGLGSRFVPL-TQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLK--EQF-EYLKDK----YDVTLV 72 (231)
T ss_pred CceEEEecccccccccc-cccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehH--HHH-HHHHHh----cCeEEE
Confidence 68999999999999999 9999999999999999999999999999999999999652 233 355553 468888
Q ss_pred EccCC--cChHHHHHHHHhcCCCCcEEEEcCCccc
Q 012817 83 TVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVS 115 (456)
Q Consensus 83 ~~~~~--~gt~~al~~~~~~l~~~~~lv~~~D~i~ 115 (456)
+.+.. ....-++..|.+.+. +..++.+|.+.
T Consensus 73 yN~kY~~yNn~ySlyla~d~l~--ntYiidsDnyl 105 (231)
T COG4750 73 YNPKYREYNNIYSLYLARDFLN--NTYIIDSDNYL 105 (231)
T ss_pred eCchHHhhhhHHHHHHHHHHhc--ccEEeccchHh
Confidence 76665 456688888988885 45566888553
No 68
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.56 E-value=3.8e-14 Score=126.02 Aligned_cols=122 Identities=21% Similarity=0.267 Sum_probs=92.5
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
|.+||||||+|+||.+ .||+|+|++|+|||+|+++++..++++++++++++. .+..+.++.+. ...+.
T Consensus 1 m~aIILAgG~gsRmg~-----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~--~~~~~~~l~~~-----~~~~~ 68 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG-----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPH--TPKTEEYINSA-----YKDYK 68 (183)
T ss_pred CeEEEECCccCccCCC-----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCC--HHHHHHHHhhc-----CcEEE
Confidence 6899999999999932 699999999999999999999988999999999754 23455555432 12222
Q ss_pred EccCCcChHHHHHHHHhcCC-CCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEE
Q 012817 83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMI 137 (456)
Q Consensus 83 ~~~~~~gt~~al~~~~~~l~-~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~ 137 (456)
.....|...++..+++.+. .++++++.|| ++....++.+++.+...+.....++
T Consensus 69 -~~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~ 125 (183)
T TIGR00454 69 -NASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVM 125 (183)
T ss_pred -ecCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 2455788888888887543 5689999999 5667789999998877655544333
No 69
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.56 E-value=8.1e-14 Score=120.92 Aligned_cols=98 Identities=20% Similarity=0.311 Sum_probs=67.4
Q ss_pred CCEeCCCcEECCCCEECCCCEECCCCeEe----eeEECCCCEECCCcEE-----eCeEECCCCEECCCcEEcCeEECCCC
Q 012817 351 SAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKV-----VNSVVMNHVTIGDGCSIQGSVICSNA 421 (456)
Q Consensus 351 ~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i-----~~s~i~~~~~ig~~~~i~~~ii~~~~ 421 (456)
++.+++++.+.+++.||++|.|+++|.|. ++.||++|.|+++|.| .+|+|++++.|++++.+.+++|++++
T Consensus 6 ~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~ 85 (155)
T cd04745 6 SSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNA 85 (155)
T ss_pred CeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCC
Confidence 33333334444444555555555555554 3678888888888888 46888888888888888888888888
Q ss_pred EECCCcEec-CeEECCCCEECCCcEEcC
Q 012817 422 QLQERVALK-DCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 422 ~I~~~~~i~-~~~i~~~~~v~~~~~~~~ 448 (456)
.|+.+++|. +++|+++++|++++.+..
T Consensus 86 ~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~ 113 (155)
T cd04745 86 LVGMNAVVMDGAVIGEESIVGAMAFVKA 113 (155)
T ss_pred EECCCCEEeCCCEECCCCEECCCCEeCC
Confidence 888888774 477777777777766654
No 70
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.56 E-value=7e-14 Score=124.67 Aligned_cols=102 Identities=22% Similarity=0.377 Sum_probs=76.2
Q ss_pred eeCCCCEeCCCcEECCCCEECCCCEECCCCeEe----eeEECCCCEECCCcEE-----eCeEECCCCEECCCcEEcCeEE
Q 012817 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKV-----VNSVVMNHVTIGDGCSIQGSVI 417 (456)
Q Consensus 347 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i-----~~s~i~~~~~ig~~~~i~~~ii 417 (456)
.|++++.|++++.|.+++.||++|.|+++|.|. +.+||++|.||++|.| .+|+|+++++||+++.|.+|+|
T Consensus 10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siI 89 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIV 89 (192)
T ss_pred cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEE
Confidence 344455555555555555566666666666554 4689999999999998 4689999999999999999999
Q ss_pred CCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817 418 CSNAQLQERVALK-DCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 418 ~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~ 448 (456)
+++|.||.++.+. +++||+++.|++++.+..
T Consensus 90 g~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~ 121 (192)
T TIGR02287 90 GRNALVGMNAVVMDGAVIGENSIVAASAFVKA 121 (192)
T ss_pred CCCCEECCCcccCCCeEECCCCEEcCCCEECC
Confidence 9999999998774 577777777777766554
No 71
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.56 E-value=3.8e-14 Score=108.75 Aligned_cols=79 Identities=51% Similarity=0.941 Sum_probs=60.2
Q ss_pred ECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCc
Q 012817 366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC 444 (456)
Q Consensus 366 i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~ 444 (456)
|++++.|++++.|.++.|+++|.|++++.|.+|+|++++.||+++.|.+|+|++++.|++++.+.+|+|++++.|++++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 4555666666666667777788887777887788888888888888888888888888888888888888888777764
No 72
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.54 E-value=3.5e-13 Score=124.82 Aligned_cols=120 Identities=22% Similarity=0.288 Sum_probs=89.7
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i 79 (456)
|++.+||||||.|+|| +...||+|+|++|+|||+|+++.+..++ +++++|+++.... +.+....... . ...
T Consensus 2 ~~~~~iILAaG~s~R~----g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~-~~~~~~~~~~--~-~~~ 73 (227)
T PRK00155 2 MMVYAIIPAAGKGSRM----GADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDR-PDFAELLLAK--D-PKV 73 (227)
T ss_pred CceEEEEEcCcccccc----CCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHH-HHHHHHhhcc--C-Cce
Confidence 6788999999999999 6668999999999999999999999865 8999999985431 2222211111 0 123
Q ss_pred EEEEccCCcChHHHHHHHHhcCC-CCcEEEEcCC--cccCCChhHHHHHHHhcC
Q 012817 80 EVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHD 130 (456)
Q Consensus 80 ~~~~~~~~~gt~~al~~~~~~l~-~~~~lv~~~D--~i~~~~l~~~l~~~~~~~ 130 (456)
.+. ....+..++++.+++.+. .+.++++.|| ++....++.+++.+.+.+
T Consensus 74 ~~~--~~~~~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (227)
T PRK00155 74 TVV--AGGAERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETG 125 (227)
T ss_pred EEe--CCcchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 332 333467899999988873 4568999999 677778999999887664
No 73
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.54 E-value=1.2e-13 Score=129.96 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=47.5
Q ss_pred CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-------------eeEECCCCEECCCcEEeC--------eEECC
Q 012817 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVVN--------SVVMN 402 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-------------~s~Ig~~~~ig~~~~i~~--------s~i~~ 402 (456)
+++.|++++.|++++.|++++.||++|.|++++.|. +++||++|.|+++|.|.. ++|++
T Consensus 28 ~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~ 107 (254)
T cd03351 28 PNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGN 107 (254)
T ss_pred CCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECC
Confidence 333344444444444444444444444444444443 345555555555555542 44555
Q ss_pred CCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817 403 HVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 447 (456)
Q Consensus 403 ~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~ 447 (456)
+|.|++++.|. +|+|+++|.|+.++.+. +++||+++.|++++.+.
T Consensus 108 ~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~ 154 (254)
T cd03351 108 NNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVH 154 (254)
T ss_pred CCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceEC
Confidence 55555555442 44444444444444332 34444444444443333
No 74
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.54 E-value=9.3e-14 Score=130.00 Aligned_cols=112 Identities=19% Similarity=0.385 Sum_probs=71.1
Q ss_pred CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEeC--------------------eEECC
Q 012817 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVN--------------------SVVMN 402 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~--------------------s~i~~ 402 (456)
.++.|++++.|++++.|++++.||++|+|.+++.|.+ +.||++|.|+++++|+. .+|++
T Consensus 128 ~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd 207 (338)
T COG1044 128 AGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGD 207 (338)
T ss_pred CCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECC
Confidence 3333334444444444444444444444444444543 67777777777777742 25777
Q ss_pred CCEECCCcEEc-C----eEECCCCEECCCcEe-cCeEECCCCEECCCcEEcCCeeeecc
Q 012817 403 HVTIGDGCSIQ-G----SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGESLARKE 455 (456)
Q Consensus 403 ~~~ig~~~~i~-~----~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~~~~~~~~ 455 (456)
+|.||.+++|. . ++|++++.|+..+.| ++|.||.++.|.+++-+.|.+-.++|
T Consensus 208 ~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~ 266 (338)
T COG1044 208 DVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKY 266 (338)
T ss_pred ceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCe
Confidence 78888888885 3 788888888877777 47888888888888888777655543
No 75
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.54 E-value=1.5e-13 Score=122.92 Aligned_cols=102 Identities=19% Similarity=0.328 Sum_probs=77.4
Q ss_pred eeCCCCEeCCCcEECCCCEECCCCEECCCCeEee----eEECCCCEECCCcEEe-----CeEECCCCEECCCcEEcCeEE
Q 012817 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQGSVI 417 (456)
Q Consensus 347 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~----s~Ig~~~~ig~~~~i~-----~s~i~~~~~ig~~~~i~~~ii 417 (456)
.+++++.|++++.|.+++.||++|.|+++|.|.. .+|+.+|.||++|.|+ +|+|+++++||.++.+.+|+|
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vI 91 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVI 91 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEE
Confidence 3445555555555555555555566665555543 5788888888888885 478999999999999999999
Q ss_pred CCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817 418 CSNAQLQERVALK-DCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 418 ~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~ 448 (456)
+++|.||.++++. +++||++++|++|+.+..
T Consensus 92 G~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~ 123 (196)
T PRK13627 92 GRDALVGMNSVIMDGAVIGEESIVAAMSFVKA 123 (196)
T ss_pred CCCCEECcCCccCCCcEECCCCEEcCCCEEeC
Confidence 9999999999774 788999999988887665
No 76
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.53 E-value=1.5e-13 Score=129.17 Aligned_cols=103 Identities=21% Similarity=0.381 Sum_probs=48.6
Q ss_pred CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEe-------------CeEECCCCEECCC
Q 012817 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-------------NSVVMNHVTIGDG 409 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-------------~s~i~~~~~ig~~ 409 (456)
+.+.+++++.|++++.|++++.||++|.|+++|.|.. +.||++|.|++++.|+ +++|+++|.|+++
T Consensus 10 ~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~ 89 (254)
T cd03351 10 PGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREF 89 (254)
T ss_pred CCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCc
Confidence 3333444444444444444444444444444444442 4555555555555553 3445555555555
Q ss_pred cEEc--------CeEECCCCEECCCcEe-cCeEECCCCEECCCcEE
Q 012817 410 CSIQ--------GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEY 446 (456)
Q Consensus 410 ~~i~--------~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~ 446 (456)
|.|. .++||+++.|++++.| ++|+||+++.+++++.+
T Consensus 90 ~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i 135 (254)
T cd03351 90 VTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATL 135 (254)
T ss_pred cEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccc
Confidence 5553 2445555555555555 34444444444444433
No 77
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.53 E-value=4.5e-13 Score=123.21 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=86.0
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 83 (456)
+||||||.|+|| ....||+|++++|+|||+|+++++.++ ++++++|++++... +.+...+.. ...+.++
T Consensus 2 aiIlAaG~s~R~----~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~-~~~~~~~~~----~~~~~~~- 71 (217)
T TIGR00453 2 AVIPAAGRGTRF----GSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQ-EFFQKYLVA----RAVPKIV- 71 (217)
T ss_pred EEEEcCcccccC----CCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHH-HHHHHHhhc----CCcEEEe-
Confidence 799999999999 445799999999999999999999988 79999999975421 233332221 1112332
Q ss_pred ccCCcChHHHHHHHHhcC-CCCcEEEEcCC--cccCCChhHHHHHHHhcC
Q 012817 84 VPEDVGTAGALRAIAHHL-TAKDVLVVSGD--LVSDVPPGAVTAAHRRHD 130 (456)
Q Consensus 84 ~~~~~gt~~al~~~~~~l-~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~ 130 (456)
....+..++++.+++.+ ..+.++++.|| ++....+..+++.+.+.+
T Consensus 72 -~~~~~~~~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 120 (217)
T TIGR00453 72 -AGGDTRQDSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKAG 120 (217)
T ss_pred -CCCchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 23345678899998877 55679999999 577778999999876643
No 78
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.53 E-value=1.8e-13 Score=123.50 Aligned_cols=103 Identities=21% Similarity=0.352 Sum_probs=54.2
Q ss_pred CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCC--
Q 012817 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSN-- 420 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~-- 420 (456)
+...+++++.|++.+.|++++.|+++|.|++++.|.++.|+++|.|++++.|.+|+|++++.||+++.|. +++|+++
T Consensus 14 ~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~ 93 (193)
T cd03353 14 GDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVH 93 (193)
T ss_pred CCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCE
Confidence 3444444445555555555555555555555555555555555555555555555555555555555554 4444444
Q ss_pred ---------------CEECCCcEecCeEECCCCEECCCcEE
Q 012817 421 ---------------AQLQERVALKDCQVGQGYVVSAGCEY 446 (456)
Q Consensus 421 ---------------~~I~~~~~i~~~~i~~~~~v~~~~~~ 446 (456)
+.|++.+.+.++.||.++.|++++.+
T Consensus 94 Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~ 134 (193)
T cd03353 94 IGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTIT 134 (193)
T ss_pred ECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEE
Confidence 44444444455566666666655544
No 79
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.53 E-value=3.9e-13 Score=125.06 Aligned_cols=186 Identities=17% Similarity=0.208 Sum_probs=113.5
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 84 (456)
+||||+|.|+|| .+|+|++++|||||+|+++++..+++++|+|+++.. .+...+.+. ++..+..
T Consensus 2 ~iIpA~g~s~R~-------~~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~~----~i~~~~~~~-----g~~~v~~ 65 (238)
T TIGR00466 2 VIIPARLASSRL-------PGKPLEDIFGKPMIVHVAENANESGADRCIVATDDE----SVAQTCQKF-----GIEVCMT 65 (238)
T ss_pred EEEecCCCCCCC-------CCCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCHH----HHHHHHHHc-----CCEEEEe
Confidence 799999999999 379999999999999999999988899999998643 334333321 2333321
Q ss_pred c--CCcChHHHHHHHHhcC---CCCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817 85 P--EDVGTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (456)
Q Consensus 85 ~--~~~gt~~al~~~~~~l---~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (456)
. ...|+ +.+..+.+.+ ..+.++++.|| ++....++++++.+.+.+.+++++..+... +.+ .
T Consensus 66 ~~~~~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d--~~~---------~ 133 (238)
T TIGR00466 66 SKHHNSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD--AEE---------A 133 (238)
T ss_pred CCCCCChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC--HHH---------c
Confidence 1 22343 3333343333 23458889999 677888999999886655666666555432 111 0
Q ss_pred CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (456)
Q Consensus 158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~ 225 (456)
.+|+. ..+..|.+++.+.+.++.....++.. . ....|.. ...+...|+|.|+++.|.++..
T Consensus 134 ~~p~~-vk~v~~~~g~alyfsr~~ip~~R~~~-~---~~~tpq~--~~~~~h~Giy~~~~~~L~~~~~ 194 (238)
T TIGR00466 134 FNPNA-VKVVLDSQGYALYFSRSLIPFDRDFF-A---KRQTPVG--DNLLRHIGIYGYRAGFIEEYVA 194 (238)
T ss_pred cCCCc-eEEEeCCCCeEEEecCCCCCCCCCcc-c---ccccccc--cceeEEEEEEeCCHHHHHHHHh
Confidence 11222 22344766765555443221122100 0 0000000 1135678999999999998864
No 80
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.52 E-value=3.2e-13 Score=130.65 Aligned_cols=87 Identities=21% Similarity=0.338 Sum_probs=47.5
Q ss_pred CCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-------
Q 012817 343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ------- 413 (456)
Q Consensus 343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~------- 413 (456)
++.+.+++++.|++++.|++++.||++|.|++++.|+ ++.||++|.|++++.|. +|+|+++|.|+++|.|+
T Consensus 101 ~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~ 180 (324)
T TIGR01853 101 DPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYA 180 (324)
T ss_pred CCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccce
Confidence 3334444444444444444444444455555555553 35666666666666665 56666666666666663
Q ss_pred --------------CeEECCCCEECCCcEe
Q 012817 414 --------------GSVICSNAQLQERVAL 429 (456)
Q Consensus 414 --------------~~ii~~~~~I~~~~~i 429 (456)
+++|+++|.||++++|
T Consensus 181 ~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I 210 (324)
T TIGR01853 181 HTANGGHVKIPQIGRVIIEDDVEIGANTTI 210 (324)
T ss_pred eccCCcceecCccceEEECCCcEECCCCEE
Confidence 2566666666666655
No 81
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=117.56 Aligned_cols=108 Identities=20% Similarity=0.306 Sum_probs=88.7
Q ss_pred ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-----CeEECCCCEECCCcEEcCe
Q 012817 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQGS 415 (456)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-----~s~i~~~~~ig~~~~i~~~ 415 (456)
.+++.++++|+|.|-.++.|++++.|+++++|.... .+-.||+++.|.++|+|+ .+.|+++|+||+++.|.+|
T Consensus 13 ~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc 90 (176)
T COG0663 13 KIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGC 90 (176)
T ss_pred CCCCceEECCCCEEEEeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEe
Confidence 345677888888887778888888887777776544 457999999999999997 4689999999999999999
Q ss_pred EECCCCEECCCcEec-CeEECCCCEECCCcEEcCCe
Q 012817 416 VICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGES 450 (456)
Q Consensus 416 ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~~ 450 (456)
.|+++|.||-|++|- ++.||++++|++|+.+....
T Consensus 91 ~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k 126 (176)
T COG0663 91 TIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGK 126 (176)
T ss_pred EECCCcEEecCceEeCCcEECCCcEEccCCcccCCc
Confidence 999999999999764 58999999998888876644
No 82
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.52 E-value=2.9e-13 Score=118.22 Aligned_cols=68 Identities=22% Similarity=0.458 Sum_probs=34.4
Q ss_pred eEECCCCEECCCcEEeCe-----------EECCCCEECCCcEEcCeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817 381 SVIGRHCRIGSNVKVVNS-----------VVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 381 s~Ig~~~~ig~~~~i~~s-----------~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~ 448 (456)
++||++|.|+++|.|.++ .|++++.++.++.+.+++||++|.|+.+++| +++.||++++|++++.+..
T Consensus 39 i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~ 118 (164)
T cd04646 39 IIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPS 118 (164)
T ss_pred eEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECC
Confidence 355555555555555432 3444444444555555555555555555544 2445555555554444433
No 83
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.51 E-value=3.1e-13 Score=127.08 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=47.0
Q ss_pred CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-------------eeEECCCCEECCCcEEe--------CeEECCC
Q 012817 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVV--------NSVVMNH 403 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-------------~s~Ig~~~~ig~~~~i~--------~s~i~~~ 403 (456)
.+.|++++.|++++.|.+++.||++|.|++++.|+ +++||++|.|+++|.|. +++|+++
T Consensus 28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~ 107 (254)
T TIGR01852 28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN 107 (254)
T ss_pred CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCC
Confidence 33333333334444444444444444444444443 34555555555555554 2244444
Q ss_pred CEECCCcEE-cCeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817 404 VTIGDGCSI-QGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 447 (456)
Q Consensus 404 ~~ig~~~~i-~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~ 447 (456)
+.|++++.| .+|+|++++.|++++.+. +++||++++|++++.+.
T Consensus 108 ~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~ 153 (254)
T TIGR01852 108 NLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVH 153 (254)
T ss_pred CEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEEC
Confidence 444444444 244444444444444432 34444444444444433
No 84
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.50 E-value=6.6e-13 Score=124.84 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=28.4
Q ss_pred EECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817 382 VIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 447 (456)
Q Consensus 382 ~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~ 447 (456)
+||++|.|+.++.|. +|+|++++.|+.++.+. +++|+++|.|+.++.|. ++.|+++++|++++.+.
T Consensus 103 ~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~ 171 (254)
T TIGR01852 103 RIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVS 171 (254)
T ss_pred EECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEe
Confidence 344444444444442 34444444444444443 44444444444444443 34444444444444443
No 85
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.49 E-value=1.1e-12 Score=120.63 Aligned_cols=120 Identities=20% Similarity=0.247 Sum_probs=86.6
Q ss_pred eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
.+||||||.|+||. ...||+|+|++|+|||+|+++.+..++ +++++|++++... +.... ..... ....+.++
T Consensus 2 ~~vILAaG~s~R~~----~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~-~~~~~-~~~~~-~~~~~~~~ 74 (218)
T cd02516 2 AAIILAAGSGSRMG----ADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDI-DLAKE-LAKYG-LSKVVKIV 74 (218)
T ss_pred EEEEECCcccccCC----CCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHH-HHHHH-HHhcc-cCCCeEEE
Confidence 58999999999994 337999999999999999999999876 8999999875432 12221 11111 11123333
Q ss_pred EccCCcChHHHHHHHHhcCC---CCcEEEEcCC--cccCCChhHHHHHHHhcCce
Q 012817 83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV 132 (456)
Q Consensus 83 ~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~ 132 (456)
....+..++++.+++++. .+.++++.|| ++....++.+++.+.+.++.
T Consensus 75 --~~~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~ 127 (218)
T cd02516 75 --EGGATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAA 127 (218)
T ss_pred --CCchHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcE
Confidence 334566788999988773 4568899999 67777899999988766543
No 86
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.49 E-value=3e-13 Score=103.69 Aligned_cols=79 Identities=18% Similarity=0.445 Sum_probs=72.8
Q ss_pred eCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCc
Q 012817 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 427 (456)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~ 427 (456)
|++++.|++++.+. ++.|+++|.|++++.|.+++|+++|.|++++.|.+|+|++++.|++++.+.+|+|++++.|++++
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 56777888888885 68999999999999999999999999999999999999999999999999999999999999764
No 87
>PLN02296 carbonate dehydratase
Probab=99.49 E-value=6.1e-13 Score=124.38 Aligned_cols=104 Identities=20% Similarity=0.292 Sum_probs=69.3
Q ss_pred CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-----------CeEECCCCEECCCcEE
Q 012817 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-----------NSVVMNHVTIGDGCSI 412 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-----------~s~i~~~~~ig~~~~i 412 (456)
+.++|+|++.+.+++.||++|.|+++|+|.... .+.+||++|.|+++|.|. +|+|+++|+||.+|.|
T Consensus 57 ~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~--~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI 134 (269)
T PLN02296 57 KDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL 134 (269)
T ss_pred CCCEECCCcEEEcceEECCCCEECCCCEEEcCC--CceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee
Confidence 444555555544444444444444444443221 135788888888888884 5788888888888888
Q ss_pred cCeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcCC
Q 012817 413 QGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGE 449 (456)
Q Consensus 413 ~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~~ 449 (456)
.+|+|+++|.||.+++| ++++|+++++|++|+.+...
T Consensus 135 ~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~ 172 (269)
T PLN02296 135 HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQN 172 (269)
T ss_pred cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecC
Confidence 88888888888888876 46777777777777666544
No 88
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.49 E-value=3.5e-13 Score=126.16 Aligned_cols=104 Identities=19% Similarity=0.338 Sum_probs=44.4
Q ss_pred CCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEE--------
Q 012817 343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI-------- 412 (456)
Q Consensus 343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i-------- 412 (456)
+++.+|++++.||+++.|+++++|+++|.||++|.|. +++|++++.||++|.|+ +++|+.+......+.+
T Consensus 121 g~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~ 200 (338)
T COG1044 121 GPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQI 200 (338)
T ss_pred CCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEccee
Confidence 3344444444444444444444444444444444443 24444444444444444 4444433222211111
Q ss_pred cCeEECCCCEECCCcEec-----CeEECCCCEECCCcEE
Q 012817 413 QGSVICSNAQLQERVALK-----DCQVGQGYVVSAGCEY 446 (456)
Q Consensus 413 ~~~ii~~~~~I~~~~~i~-----~~~i~~~~~v~~~~~~ 446 (456)
++.+|+++|.||+++.|+ +++|++++.|.+.+.+
T Consensus 201 g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqI 239 (338)
T COG1044 201 GRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQI 239 (338)
T ss_pred ceEEECCceEEcccceeccccccCceecCCcEEcceeEE
Confidence 135555555555555553 2444444444444333
No 89
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.48 E-value=7.9e-13 Score=116.09 Aligned_cols=106 Identities=15% Similarity=0.261 Sum_probs=71.0
Q ss_pred CceeCCCCEeCCCcEECC----CCEECCCCEECCCCeEe-----eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcC
Q 012817 345 NNIIHPSAELGSKTTVGP----HCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG 414 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~----~~~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~ 414 (456)
+..+++.+.|++++.|+. ++.||++|.|++++.|. ++.||++|.|++++.|. +++|+++|.||.+|.|.+
T Consensus 20 ~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~ 99 (167)
T cd00710 20 DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFN 99 (167)
T ss_pred eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEEC
Confidence 333444444444444433 23466666666666663 35677777777777777 477888888888888878
Q ss_pred eEECCCCEECCCcEecCeEECCCCEECCCcEEcCCe
Q 012817 415 SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGES 450 (456)
Q Consensus 415 ~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~~ 450 (456)
+.|+++|.|++++.|.++.|++++.|++++.+....
T Consensus 100 ~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~v~~~~ 135 (167)
T cd00710 100 AKVGDNCVIGHNAVVDGVEIPPGRYVPAGAVITSQT 135 (167)
T ss_pred CEECCCCEEcCCCEEeCCEeCCCCEECCCCEEcCCC
Confidence 888888888888877777778888887777766443
No 90
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.48 E-value=9.6e-13 Score=115.56 Aligned_cols=109 Identities=18% Similarity=0.331 Sum_probs=83.4
Q ss_pred cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-----CeEECCCCEECCCcEEc-Ce
Q 012817 342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQ-GS 415 (456)
Q Consensus 342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-----~s~i~~~~~ig~~~~i~-~~ 415 (456)
+++++.|+|++.|.+++.+|+++.|+++|.|+.+.. .++.||++|.|++++.|. ++.|++++.|+.++.|. .+
T Consensus 5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~-~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~ 83 (167)
T cd00710 5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEG-TPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPA 83 (167)
T ss_pred eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCC-CcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCE
Confidence 345555555555555555555555555555543321 247999999999999994 67899999999999997 59
Q ss_pred EECCCCEECCCcEecCeEECCCCEECCCcEEcCCee
Q 012817 416 VICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESL 451 (456)
Q Consensus 416 ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~~~ 451 (456)
+|+++|.||.++.|.++.||+++.|++++.+.+..+
T Consensus 84 ~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~~~i 119 (167)
T cd00710 84 YIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDGVEI 119 (167)
T ss_pred EECCCCEECCCCEEECCEECCCCEEcCCCEEeCCEe
Confidence 999999999999999999999999999999976444
No 91
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.48 E-value=6.7e-13 Score=125.00 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=7.6
Q ss_pred eEECCCCEECCCcEEe
Q 012817 381 SVIGRHCRIGSNVKVV 396 (456)
Q Consensus 381 s~Ig~~~~ig~~~~i~ 396 (456)
+.||++|.|++++.|.
T Consensus 81 v~IG~~~~I~e~~~I~ 96 (262)
T PRK05289 81 LVIGDNNTIREFVTIN 96 (262)
T ss_pred EEECCCCEECCCeEEe
Confidence 4444444444444443
No 92
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.47 E-value=1.1e-12 Score=113.52 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=59.5
Q ss_pred CCEeCCCcEECCCCEECCCCEECCCCeEee----eEECCCCEECCCcEEeC-----eEECCCCEECCCcEEcCeEECCCC
Q 012817 351 SAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVVN-----SVVMNHVTIGDGCSIQGSVICSNA 421 (456)
Q Consensus 351 ~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~----s~Ig~~~~ig~~~~i~~-----s~i~~~~~ig~~~~i~~~ii~~~~ 421 (456)
++.|++++.|.+++.||++|.|++++.|.. .+||++|.|+++|.|.. ++|++++.|++++.+.+++|++++
T Consensus 6 ~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~ 85 (154)
T cd04650 6 KAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYV 85 (154)
T ss_pred CeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCC
Confidence 333333343444444444444444454443 37777777777777763 667777777777777777777777
Q ss_pred EECCCcEe-cCeEECCCCEECCCcEEc
Q 012817 422 QLQERVAL-KDCQVGQGYVVSAGCEYK 447 (456)
Q Consensus 422 ~I~~~~~i-~~~~i~~~~~v~~~~~~~ 447 (456)
.|+.++.+ .+++|+++++|++++.+.
T Consensus 86 ~Ig~~~~i~~~~~Ig~~~~vg~~~~v~ 112 (154)
T cd04650 86 IVGMGAILLNGAKIGDHVIIGAGAVVT 112 (154)
T ss_pred EEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 77777765 356666666666665544
No 93
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.47 E-value=5.2e-13 Score=101.93 Aligned_cols=76 Identities=39% Similarity=0.691 Sum_probs=54.2
Q ss_pred ECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC-eEECCCCEEC
Q 012817 366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-CQVGQGYVVS 441 (456)
Q Consensus 366 i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~-~~i~~~~~v~ 441 (456)
|+++|.|++++.|.+++||++|.|++++.|.+|+|+++++|++++.|.+++|++++.|++++.+.+ +++++++.|+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 455555666666666677777777777777777777777777777777777777777777777765 6666666654
No 94
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.46 E-value=7.5e-13 Score=118.49 Aligned_cols=120 Identities=28% Similarity=0.380 Sum_probs=89.4
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
+.+||||||.|+||. .||+|+|++|||||+|+++.+...++++++|+++.... ....+... ..+.++
T Consensus 1 ~~~vIlAgG~s~R~g------~~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~--~~~~~~~~-----~~~~~~ 67 (186)
T cd04182 1 IAAIILAAGRSSRMG------GNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEAD--AVRAALAG-----LPVVVV 67 (186)
T ss_pred CeEEEECCCCCCCCC------CCceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHH--HHHHHhcC-----CCeEEE
Confidence 358999999999993 39999999999999999999999889999999975422 22222211 223333
Q ss_pred EccC-CcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEE
Q 012817 83 TVPE-DVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTA 135 (456)
Q Consensus 83 ~~~~-~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~ 135 (456)
..+. ..|+.++++.+++.+. .+.+++++||+ +....++.+++.+...++.+.+
T Consensus 68 ~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 125 (186)
T cd04182 68 INPDWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGIVA 125 (186)
T ss_pred eCCChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 3222 3689999999988875 56799999994 6666788998887765555433
No 95
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.46 E-value=1.8e-12 Score=127.22 Aligned_cols=13 Identities=8% Similarity=-0.133 Sum_probs=8.5
Q ss_pred CccceEEeechHH
Q 012817 207 LMDAHMYAFNRSV 219 (456)
Q Consensus 207 ~~~~giYi~~~~v 219 (456)
...++.+++++++
T Consensus 52 ~~~A~a~Iv~~d~ 64 (343)
T PRK00892 52 TTKAGAVIVSPDD 64 (343)
T ss_pred ccCCeEEEechhh
Confidence 3466777777764
No 96
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.45 E-value=1.3e-12 Score=117.78 Aligned_cols=84 Identities=11% Similarity=0.203 Sum_probs=50.2
Q ss_pred EECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECC-----------------CCEECCCcEEcCeEECCCCEECCC
Q 012817 365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMN-----------------HVTIGDGCSIQGSVICSNAQLQER 426 (456)
Q Consensus 365 ~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~-----------------~~~ig~~~~i~~~ii~~~~~I~~~ 426 (456)
.|+++|.|++++.|.+++|++++.|++++.|. +++|++ ++.+++.+.+++|+|++++.||++
T Consensus 52 ~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~ 131 (193)
T cd03353 52 TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAG 131 (193)
T ss_pred EECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCc
Confidence 45555555555555556666666665555554 444444 444444445556888999988888
Q ss_pred cEec--------CeEECCCCEECCCcEEcC
Q 012817 427 VALK--------DCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 427 ~~i~--------~~~i~~~~~v~~~~~~~~ 448 (456)
+.+. .++|++++.++.++.+..
T Consensus 132 ~~~~~~~~~~~~~~vigd~~~ig~~~~i~~ 161 (193)
T cd03353 132 TITCNYDGVNKHRTVIGDNVFIGSNSQLVA 161 (193)
T ss_pred eEEeccCCccccCCEECCCeEEccCCEEeC
Confidence 7652 356666666666655443
No 97
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.45 E-value=1.4e-12 Score=112.85 Aligned_cols=87 Identities=23% Similarity=0.357 Sum_probs=54.8
Q ss_pred CCCEECCCCEECCCCeEe----eeEECCCCEECCCcEEeC-----eEECCCCEECCCcEEcCeEECCCCEECCCcEec-C
Q 012817 362 PHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVN-----SVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-D 431 (456)
Q Consensus 362 ~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i~~-----s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~-~ 431 (456)
+++.||++|.|++++.|. +++||++|.|++++.|.. ++|++++.|+.+|.+.+++|++++.|++++.+. +
T Consensus 16 g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~ 95 (153)
T cd04645 16 GDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDG 95 (153)
T ss_pred EeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCC
Confidence 333444444444444443 357777777777777765 477777777777777777777777777777664 5
Q ss_pred eEECCCCEECCCcEEcC
Q 012817 432 CQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 432 ~~i~~~~~v~~~~~~~~ 448 (456)
++|++++.|++++.+..
T Consensus 96 ~~ig~~~~ig~~~~v~~ 112 (153)
T cd04645 96 AVIGKGSIVAAGSLVPP 112 (153)
T ss_pred CEECCCCEECCCCEECC
Confidence 66666666666655543
No 98
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.45 E-value=1.2e-12 Score=100.04 Aligned_cols=77 Identities=25% Similarity=0.475 Sum_probs=54.8
Q ss_pred eCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcC-eEECCCCEEC
Q 012817 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG-SVICSNAQLQ 424 (456)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~-~ii~~~~~I~ 424 (456)
++|++.|++++.|++++.|+++|.|++++.|.+++|++++.|++++.|.+|++++++.|++++.+.+ ++|+++++|+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence 4566677777777777777777777777777777777777777777777777777777777777753 6666666554
No 99
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=123.11 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=35.0
Q ss_pred EECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817 382 VIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 382 ~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~ 448 (456)
.||++|.|+.++.|. +|+|++++.++.++.+. +++|+++|.||.++.|. ++.||++++|++++.+..
T Consensus 107 ~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~ 176 (262)
T PRK05289 107 RIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQ 176 (262)
T ss_pred EECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecceec
Confidence 455555555555554 44555555555555543 45555555555555443 455555555555555443
No 100
>PLN02472 uncharacterized protein
Probab=99.44 E-value=2.4e-12 Score=118.79 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=69.6
Q ss_pred cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-----------CeEECCCCEECCCc
Q 012817 342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-----------NSVVMNHVTIGDGC 410 (456)
Q Consensus 342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-----------~s~i~~~~~ig~~~ 410 (456)
++..+++.|++.+.+++.|++++.|+++++|.... ...+||++|.|+++|.|+ +++|+++|+||++|
T Consensus 62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~--~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s 139 (246)
T PLN02472 62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDL--NKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYS 139 (246)
T ss_pred cCCCCEECCCCEEecCEEECCCCEEcCCCEEecCC--cceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCc
Confidence 33455566666555555555555555555443221 124788888888888884 57889999999999
Q ss_pred EEcCeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817 411 SIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 447 (456)
Q Consensus 411 ~i~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~ 447 (456)
.|.+|+|+++|.||.+++|. +++|+++++|++++.+.
T Consensus 140 ~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~ 177 (246)
T PLN02472 140 LLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLP 177 (246)
T ss_pred EECCeEEcCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence 88888888888888888763 56666666666655544
No 101
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.44 E-value=2.1e-12 Score=116.66 Aligned_cols=100 Identities=14% Similarity=0.312 Sum_probs=77.2
Q ss_pred CCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc---------------
Q 012817 349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ--------------- 413 (456)
Q Consensus 349 ~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~--------------- 413 (456)
++.+.|++++.| .++.||+++.|+++|.|.+++||++|.|++++.+.+++|+++|.|++++.|.
T Consensus 6 ~~~~~I~~~a~i-~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~ 84 (204)
T TIGR03308 6 SPEPTLHPTAEL-TESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFT 84 (204)
T ss_pred CCCCeECCCcEE-eccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccc
Confidence 344455555555 3467777777777777778888888888888888888888888888887763
Q ss_pred -----------------------CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcCC
Q 012817 414 -----------------------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE 449 (456)
Q Consensus 414 -----------------------~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~ 449 (456)
+++|++++.||.+++|. +++||++++|++++.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~ 144 (204)
T TIGR03308 85 YRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD 144 (204)
T ss_pred cccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 67788888899888875 7899999999998887653
No 102
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.44 E-value=8.1e-12 Score=122.99 Aligned_cols=127 Identities=23% Similarity=0.318 Sum_probs=93.0
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i 79 (456)
|++.+||||||.|+|| +...||+|+|++|+|||+|+++.+...+ +++++|++++... +..+.+.... . .+
T Consensus 4 m~v~aIILAAG~GsRm----g~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~-~~~~~~~~~~---~-~v 74 (378)
T PRK09382 4 SDISLVIVAAGRSTRF----SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDI-AYMKKALPEI---K-FV 74 (378)
T ss_pred CcceEEEECCCCCccC----CCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHH-HHHHHhcccC---C-eE
Confidence 4578999999999999 6678999999999999999999999987 7999999875432 2222222110 1 12
Q ss_pred EEEEccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeec
Q 012817 80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSV 140 (456)
Q Consensus 80 ~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~ 140 (456)
.+ .....+..++++.+++.+.++.+++..|| ++....++.+++...+.+ ..+...++
T Consensus 75 ~~--v~gG~~r~~SV~~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~~~--a~i~~~pv 133 (378)
T PRK09382 75 TL--VTGGATRQESVRNALEALDSEYVLIHDAARPFVPKELIDRLIEALDKAD--CVLPALPV 133 (378)
T ss_pred EE--eCCCchHHHHHHHHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhcCC--eEEEEEEe
Confidence 22 34456788999999988866678999999 666677888888776543 44444443
No 103
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.44 E-value=1.4e-12 Score=117.10 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=89.0
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 84 (456)
+||||||.|+|| +.||+|+|++|+|||+|+++.+.++++++++|++++... +.+..+. . ..++.++..
T Consensus 2 ~iIla~G~s~R~------g~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~-~~~~~~~-~----~~~v~~v~~ 69 (188)
T TIGR03310 2 AIILAAGLSSRM------GQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEAD-ELVALLA-N----HSNITLVHN 69 (188)
T ss_pred eEEECCCCcccC------CCCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHH-HHHHHhc-c----CCCeEEEEC
Confidence 799999999999 369999999999999999999998899999999986532 1122221 1 123555543
Q ss_pred cCC-cChHHHHHHHHh-cCCCCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEE
Q 012817 85 PED-VGTAGALRAIAH-HLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAM 136 (456)
Q Consensus 85 ~~~-~gt~~al~~~~~-~l~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~ 136 (456)
+.. .|+.++++.+++ ....+.+++++||. +....++.+++.+...+..+++.
T Consensus 70 ~~~~~g~~~si~~~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~ 125 (188)
T TIGR03310 70 PQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP 125 (188)
T ss_pred cChhcCHHHHHHHHhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence 332 688899998887 33346799999994 55667999998887666655443
No 104
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.43 E-value=1.5e-12 Score=132.98 Aligned_cols=106 Identities=20% Similarity=0.381 Sum_probs=67.9
Q ss_pred CCceeCCCCEeCCCcEECC-----CCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-----------------CeEE
Q 012817 344 QNNIIHPSAELGSKTTVGP-----HCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-----------------NSVV 400 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~-----~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-----------------~s~i 400 (456)
++++|++++.|+.++.|++ ++.||++|+|++++.|. +++||++|.||+++.+. +++|
T Consensus 279 ~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~i 358 (446)
T PRK14353 279 PNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATI 358 (446)
T ss_pred CCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEE
Confidence 3344444444444444433 45566666666666665 46666666666665554 4555
Q ss_pred CCCCEECCCcEE-------c-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcCC
Q 012817 401 MNHVTIGDGCSI-------Q-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE 449 (456)
Q Consensus 401 ~~~~~ig~~~~i-------~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~ 449 (456)
+++|.||.++.+ . +++||++|.||.+++|. ++.||++++|++++.+...
T Consensus 359 g~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~ 416 (446)
T PRK14353 359 GAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITED 416 (446)
T ss_pred cCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECcc
Confidence 566666666554 1 57899999999998775 7899999999999887653
No 105
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.43 E-value=1.5e-12 Score=110.43 Aligned_cols=110 Identities=25% Similarity=0.407 Sum_probs=88.1
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
|.+||+|||+|+|| +. .-|||++++|||||+|+++.+.+ .+++++++++.+ ...++.++.+. .++++
T Consensus 1 m~~iiMAGGrGtRm----g~-~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~--tp~t~~~~~~~-----gv~vi 67 (177)
T COG2266 1 MMAIIMAGGRGTRM----GR-PEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPH--TPKTKEYLESV-----GVKVI 67 (177)
T ss_pred CceEEecCCccccc----CC-CcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCC--CHhHHHHHHhc-----CceEE
Confidence 57999999999999 33 66999999999999999999988 789999999755 23566666553 35555
Q ss_pred EccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHH
Q 012817 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHR 127 (456)
Q Consensus 83 ~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~ 127 (456)
. ....|...-++.+++.+. .++|++++| ++.+..++.+++.+.
T Consensus 68 ~-tpG~GYv~Dl~~al~~l~-~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 68 E-TPGEGYVEDLRFALESLG-TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred E-cCCCChHHHHHHHHHhcC-CceEEEecccccCCHHHHHHHHHHHh
Confidence 2 345789999999999996 499999999 444556888888776
No 106
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.43 E-value=1.7e-12 Score=127.43 Aligned_cols=14 Identities=36% Similarity=0.783 Sum_probs=5.4
Q ss_pred EECCCCEECCCcEE
Q 012817 382 VIGRHCRIGSNVKV 395 (456)
Q Consensus 382 ~Ig~~~~ig~~~~i 395 (456)
+||++|.||.++.|
T Consensus 205 ~Ig~~v~IGa~~~I 218 (343)
T PRK00892 205 IIGDDVEIGANTTI 218 (343)
T ss_pred EECCCcEECCCcEE
Confidence 33333333333333
No 107
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.43 E-value=1.5e-12 Score=104.73 Aligned_cols=77 Identities=29% Similarity=0.450 Sum_probs=51.3
Q ss_pred EeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC
Q 012817 353 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD 431 (456)
Q Consensus 353 ~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~ 431 (456)
.|++++.| .+++||++|.|+ ++.|.+|+|+++|.|++++.|.+|+|++++.||+++.+.+|+|++++.|++++.+.+
T Consensus 3 ~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~ 79 (104)
T cd04651 3 YIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG 79 (104)
T ss_pred eecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence 44455555 456666666666 666666777777777777777777777777777777777777777776666666543
No 108
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.42 E-value=1.4e-12 Score=121.06 Aligned_cols=127 Identities=17% Similarity=0.284 Sum_probs=91.7
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i 79 (456)
|++.+||||||.|+|| +.+.||+|++++|+|||+|+++++..++ +++++|+++.... ..+.+++.+.......+
T Consensus 1 ~~~~~iIlAaG~g~R~----g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~-~~~~~~~~~~~~~~~~~ 75 (230)
T PRK13385 1 MNYELIFLAAGQGKRM----NAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQER-KHVQDLMKQLNVADQRV 75 (230)
T ss_pred CceEEEEECCeecccc----CCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhH-HHHHHHHHhcCcCCCce
Confidence 6778999999999999 6668999999999999999999998764 8999999875432 23333333221111123
Q ss_pred EEEEccCCcChHHHHHHHHhcCCCC-cEEEEcCC--cccCCChhHHHHHHHhcCceEE
Q 012817 80 EVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT 134 (456)
Q Consensus 80 ~~~~~~~~~gt~~al~~~~~~l~~~-~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t 134 (456)
.++ ....+..++++.+++.+.++ .++++.|| ++....++++++.+.+.++.+.
T Consensus 76 ~~v--~~g~~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~ 131 (230)
T PRK13385 76 EVV--KGGTERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAIC 131 (230)
T ss_pred EEc--CCCchHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEE
Confidence 332 34455679999998877543 47888899 6777789999998877654433
No 109
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.42 E-value=3.4e-12 Score=110.70 Aligned_cols=97 Identities=14% Similarity=0.317 Sum_probs=77.7
Q ss_pred CCceeCCCCEeCCCcEECC---CCEECCCCEECCCCeE-----eeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-C
Q 012817 344 QNNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSV-----KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G 414 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~---~~~i~~~~~I~~~~~i-----~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~ 414 (456)
.+..|++++.|++++.|.. ++.||++|.|+++|.| .+++|+++|.|++++.+.+++|+++|.||.++.|. +
T Consensus 17 g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g 96 (155)
T cd04745 17 GDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDG 96 (155)
T ss_pred ccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCC
Confidence 4455566666666665543 4678888999999988 46899999999999999999999999999999996 6
Q ss_pred eEECCCCEECCCcEec-CeEECCCCEE
Q 012817 415 SVICSNAQLQERVALK-DCQVGQGYVV 440 (456)
Q Consensus 415 ~ii~~~~~I~~~~~i~-~~~i~~~~~v 440 (456)
++|++++.|++++++. ++.|++++++
T Consensus 97 ~~Ig~~~~Ig~~s~v~~~~~i~~~~~v 123 (155)
T cd04745 97 AVIGEESIVGAMAFVKAGTVIPPRSLI 123 (155)
T ss_pred CEECCCCEECCCCEeCCCCEeCCCCEE
Confidence 9999999999887775 5667777666
No 110
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.42 E-value=1.5e-12 Score=99.40 Aligned_cols=76 Identities=36% Similarity=0.716 Sum_probs=58.2
Q ss_pred ECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEec-CeEECCCCEEC
Q 012817 366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVS 441 (456)
Q Consensus 366 i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~ 441 (456)
|+++|.|++++.|.+++|+++|.|+++++|.+|+|++++.|+++++|.+++|++++.|++++.+. +++|++++.|+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig 78 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG 78 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence 45666666666666778888888888888888888888888888888888888888888776664 45555555554
No 111
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.42 E-value=3.3e-12 Score=119.23 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=7.6
Q ss_pred EECCCCEECCCcEEe
Q 012817 382 VIGRHCRIGSNVKVV 396 (456)
Q Consensus 382 ~Ig~~~~ig~~~~i~ 396 (456)
.||++|.|++++.|.
T Consensus 79 ~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 79 EIGDRNVIREGVTIH 93 (255)
T ss_pred EECCceEECCccEEe
Confidence 455555555555443
No 112
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.42 E-value=1.8e-12 Score=119.74 Aligned_cols=124 Identities=13% Similarity=0.173 Sum_probs=89.0
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
++.+||||||.|+|| . +|+|+|++|||||+|+++.+.+++ +++|+|++... .+.++..+. .....
T Consensus 1 ~~~~iIlA~G~s~R~----~---~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~----~i~~~~~~~---~~~~~ 66 (223)
T cd02513 1 KILAIIPARGGSKGI----P---GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDE----EIAEVARKY---GAEVP 66 (223)
T ss_pred CeEEEEecCCCCCCC----C---CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCcH----HHHHHHHHh---CCCce
Confidence 357999999999999 2 599999999999999999999887 78888876533 233333221 11111
Q ss_pred EEE----ccCCcChHHHHHHHHhcCCC-----CcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEee
Q 012817 81 VAT----VPEDVGTAGALRAIAHHLTA-----KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS 139 (456)
Q Consensus 81 ~~~----~~~~~gt~~al~~~~~~l~~-----~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~ 139 (456)
+.. ..+..++.++++.+++.+.. +.++++.|| ++....++++++.+.+.+++.++.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~ 136 (223)
T cd02513 67 FLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE 136 (223)
T ss_pred eeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 211 12235788889888776532 579999999 577788999999988777776555544
No 113
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.42 E-value=4.1e-12 Score=110.99 Aligned_cols=101 Identities=12% Similarity=0.162 Sum_probs=74.6
Q ss_pred CCceeCCCCEeCCCcEEC---CCCEECCCCEECCCCeEee-----------eEECCCCEECCCcEEeCeEECCCCEECCC
Q 012817 344 QNNIIHPSAELGSKTTVG---PHCMLGEGSQMGDKCSVKR-----------SVIGRHCRIGSNVKVVNSVVMNHVTIGDG 409 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~---~~~~i~~~~~I~~~~~i~~-----------s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~ 409 (456)
++..+++++.|++++.+. +++.||++|.|+++|.|.+ +.||++|.++.++.|.+++|+++|.||.+
T Consensus 16 g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~ 95 (164)
T cd04646 16 GDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESK 95 (164)
T ss_pred CceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCC
Confidence 455556666666666553 3466777777777777764 46888888888888888889999999998
Q ss_pred cEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCc
Q 012817 410 CSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGC 444 (456)
Q Consensus 410 ~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~ 444 (456)
|.|. +++|++++.||++++|. +..|+++++++.+.
T Consensus 96 a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~ 132 (164)
T cd04646 96 SFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGAD 132 (164)
T ss_pred CEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCc
Confidence 8885 78888888888887764 56677777766654
No 114
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.41 E-value=2.9e-12 Score=124.01 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=17.6
Q ss_pred CCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEE
Q 012817 356 SKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKV 395 (456)
Q Consensus 356 ~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i 395 (456)
+++.|++++.||++|.|++++.|. +++||++|.|+++|+|
T Consensus 132 ~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 132 PGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred CCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence 333333333344444444444443 3455555555555555
No 115
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.40 E-value=3e-12 Score=97.71 Aligned_cols=78 Identities=19% Similarity=0.484 Sum_probs=70.1
Q ss_pred eeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcC-eEECCCCEECC
Q 012817 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG-SVICSNAQLQE 425 (456)
Q Consensus 347 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~-~ii~~~~~I~~ 425 (456)
+|++++.|++++.+.+ +.|+++|.|++++.|.+++|+++|.|++++.|.+|+|++++.|++++.+.+ +++++++.|++
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence 3567778888888865 899999999999999999999999999999999999999999999999986 99999888873
No 116
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.40 E-value=7.8e-12 Score=109.86 Aligned_cols=184 Identities=20% Similarity=0.227 Sum_probs=127.7
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
|++.+||+|.=.++|| ..|||-.|+|+|||.|+.++..++|.++++|.+.++...+.++++. .+
T Consensus 2 ~~~~viIPAR~~STRL-------pgKPLadI~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~G---------~~ 65 (247)
T COG1212 2 MKFVVIIPARLASTRL-------PGKPLADIGGKPMIVRVAERALKSGADRVVVATDDERIAEAVQAFG---------GE 65 (247)
T ss_pred CceEEEEecchhcccC-------CCCchhhhCCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC---------CE
Confidence 6788999999999999 6799999999999999999999999999999998665444555432 33
Q ss_pred EEEccC--CcChHHHHHHHHhcCC---CCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCC
Q 012817 81 VATVPE--DVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (456)
Q Consensus 81 ~~~~~~--~~gt~~al~~~~~~l~---~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~ 153 (456)
.+..+. +.|| +.+..+.+.+. ++.++-+.|| ++....++.+++...++++++..+..+... +.+.
T Consensus 66 avmT~~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~--~ee~----- 137 (247)
T COG1212 66 AVMTSKDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITD--EEEA----- 137 (247)
T ss_pred EEecCCCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCC--HHHh-----
Confidence 333333 3455 55666655553 3458889999 677778999999988888887666655432 2221
Q ss_pred cccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (456)
Q Consensus 154 ~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~ 225 (456)
.+|+. -.+..|.+++.|++.++..+...+..-+ ...+.-.|||.|++.+|..|..
T Consensus 138 ----~nPN~-VKvV~d~~g~ALYFSRs~iP~~rd~~~~------------~p~l~HIGIYayr~~~L~~f~~ 192 (247)
T COG1212 138 ----FNPNV-VKVVLDKEGYALYFSRAPIPYGRDNFGG------------TPFLRHIGIYAYRAGFLERFVA 192 (247)
T ss_pred ----cCCCc-EEEEEcCCCcEEEEEcCCCCCcccccCC------------cchhheeehHHhHHHHHHHHHh
Confidence 12332 3356788888888887644333211000 1234456999999999988864
No 117
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.39 E-value=5.6e-12 Score=117.71 Aligned_cols=85 Identities=14% Similarity=0.283 Sum_probs=47.8
Q ss_pred CEECCCCEECCCCeEee-------eEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeE
Q 012817 364 CMLGEGSQMGDKCSVKR-------SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQ 433 (456)
Q Consensus 364 ~~i~~~~~I~~~~~i~~-------s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~ 433 (456)
+.||++|.|+++++|.+ +.||++|.+..++.|. +|.|+++|.|+.++.+. ++.|++++.|+.++.|. ++.
T Consensus 78 v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~ 157 (255)
T PRK12461 78 LEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCR 157 (255)
T ss_pred eEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCE
Confidence 33444555555555442 3444444444444443 55555555555555553 56666777777666554 577
Q ss_pred ECCCCEECCCcEEcC
Q 012817 434 VGQGYVVSAGCEYKG 448 (456)
Q Consensus 434 i~~~~~v~~~~~~~~ 448 (456)
||++++|++++.+..
T Consensus 158 IG~~a~Vg~gs~V~~ 172 (255)
T PRK12461 158 IGALAMMAGGSRISK 172 (255)
T ss_pred ECCCcEECCCceEec
Confidence 777777777766543
No 118
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.39 E-value=9.9e-12 Score=107.46 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=81.2
Q ss_pred CCceeCCCCEeCCCcEECCC---CEECCCCEECCCCeEee-----eEECCCCEECCCcEEeCeEECCCCEECCCcEEc-C
Q 012817 344 QNNIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G 414 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~i~~-----s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~ 414 (456)
++..+++++.|++++.|.+. +.||++|.|+++|.|.. ++||+++.|++++.+.+++|++++.||.++.+. +
T Consensus 17 ~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~ 96 (154)
T cd04650 17 GDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNG 96 (154)
T ss_pred eeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCC
Confidence 44455555555555555443 48888999999998875 799999999999999999999999999999995 8
Q ss_pred eEECCCCEECCCcEec-CeEECCCCE-ECCCcEEc
Q 012817 415 SVICSNAQLQERVALK-DCQVGQGYV-VSAGCEYK 447 (456)
Q Consensus 415 ~ii~~~~~I~~~~~i~-~~~i~~~~~-v~~~~~~~ 447 (456)
++|++++.|++++.+. +..++++++ .|..+.+.
T Consensus 97 ~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~ 131 (154)
T cd04650 97 AKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVV 131 (154)
T ss_pred CEECCCCEECCCCEECCCcEeCCCCEEeccCceEe
Confidence 9999999999888776 467777777 45545543
No 119
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.39 E-value=3.5e-12 Score=109.03 Aligned_cols=94 Identities=17% Similarity=0.266 Sum_probs=70.3
Q ss_pred CceeCCCCEeCCCcEEC---CCCEECCCCEECCCCeEe-----eeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-Ce
Q 012817 345 NNIIHPSAELGSKTTVG---PHCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GS 415 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~---~~~~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ 415 (456)
+..|+.++.|++++.+. .+..||++|.|.++|.|+ ++.||++|.||+++.|+.|.|+++|.||-++.|- +|
T Consensus 29 dV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~vldga 108 (176)
T COG0663 29 DVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGA 108 (176)
T ss_pred eEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecCceEeCCc
Confidence 34444444444444443 244589999999999997 4799999999999999999999999999998886 48
Q ss_pred EECCCCEECCCcEecC-eEECCCC
Q 012817 416 VICSNAQLQERVALKD-CQVGQGY 438 (456)
Q Consensus 416 ii~~~~~I~~~~~i~~-~~i~~~~ 438 (456)
.||++|.||+|+.+.. ..+.+++
T Consensus 109 ~IG~~~iVgAgalV~~~k~~p~~~ 132 (176)
T COG0663 109 VIGDGSIVGAGALVTPGKEIPGGS 132 (176)
T ss_pred EECCCcEEccCCcccCCcCCCCCe
Confidence 8888888888877764 3334333
No 120
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.39 E-value=4.7e-12 Score=112.94 Aligned_cols=96 Identities=19% Similarity=0.376 Sum_probs=71.7
Q ss_pred CceeCCCCEeCCCcEECC---CCEECCCCEECCCCeEe-----eeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-Ce
Q 012817 345 NNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GS 415 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~---~~~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ 415 (456)
+.+|++++.|++++.|.+ ++.||++|.|+++|.|+ +|+|+++|.|++++.|.+|+|+++|.||.++.+. ++
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~ 105 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGA 105 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCe
Confidence 334444444444444432 34567888888888883 5899999999999999999999999999999996 78
Q ss_pred EECCCCEECCCcEec-CeEECCCCEE
Q 012817 416 VICSNAQLQERVALK-DCQVGQGYVV 440 (456)
Q Consensus 416 ii~~~~~I~~~~~i~-~~~i~~~~~v 440 (456)
+|++++.|++++.+. +..|.+++++
T Consensus 106 ~IG~~s~Vgags~V~~~~~ip~~~l~ 131 (192)
T TIGR02287 106 VIGENSIVAASAFVKAGAEMPAQYLV 131 (192)
T ss_pred EECCCCEEcCCCEECCCCEECCCeEE
Confidence 899998888777664 4556666554
No 121
>PLN02296 carbonate dehydratase
Probab=99.39 E-value=8.1e-12 Score=116.88 Aligned_cols=97 Identities=16% Similarity=0.301 Sum_probs=75.9
Q ss_pred CCceeCCCCEeCCCcEECCC---CEECCCCEECCCCeEe-----------eeEECCCCEECCCcEEeCeEECCCCEECCC
Q 012817 344 QNNIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDG 409 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~i~-----------~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~ 409 (456)
.+..|++++.|++++.|.++ +.||++|.|+++|.|+ +++||++|.||++|.|.+|+|+++|.||.+
T Consensus 69 G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~g 148 (269)
T PLN02296 69 GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMG 148 (269)
T ss_pred cceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECCC
Confidence 34455555666555555543 3788999999999885 579999999999999999999999999999
Q ss_pred cEEc-CeEECCCCEECCCcEec-CeEECCCCEE
Q 012817 410 CSIQ-GSVICSNAQLQERVALK-DCQVGQGYVV 440 (456)
Q Consensus 410 ~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v 440 (456)
+.|. ++.|++++.|+++++|. ++.|++++++
T Consensus 149 a~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~ 181 (269)
T PLN02296 149 ATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVW 181 (269)
T ss_pred cEECCCeEECCCCEECCCCEEecCCEeCCCeEE
Confidence 9885 78888888888887775 5667777764
No 122
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=8.4e-13 Score=131.32 Aligned_cols=88 Identities=23% Similarity=0.486 Sum_probs=75.5
Q ss_pred cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCC
Q 012817 342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSN 420 (456)
Q Consensus 342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~ 420 (456)
...+..|+.++.||.++.| .|++||+||.||.+++|.+|.|++||+||+||+|++|+|+++|+|+++|.+. +|||+.+
T Consensus 330 v~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~ 408 (673)
T KOG1461|consen 330 VGANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFG 408 (673)
T ss_pred ccceEEecccccccCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeee
Confidence 3456677777777777777 6888999999999999999999999999999999999999999999999995 8999999
Q ss_pred CEECCCcEec
Q 012817 421 AQLQERVALK 430 (456)
Q Consensus 421 ~~I~~~~~i~ 430 (456)
+++|++-++.
T Consensus 409 VVv~~~~~l~ 418 (673)
T KOG1461|consen 409 VVVGRNFVLP 418 (673)
T ss_pred eEeCCCcccc
Confidence 8888665553
No 123
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.39 E-value=1.9e-12 Score=115.46 Aligned_cols=112 Identities=27% Similarity=0.356 Sum_probs=85.0
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
+.+||||||.|+|| . .||+|+|++|+|||+|+++.+... +.+++|+++.... . +. . .++.++
T Consensus 1 ~~~iILAgG~s~Rm----g--~~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~--~---~~-~-----~~~~~v 62 (181)
T cd02503 1 ITGVILAGGKSRRM----G--GDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQE--R---YA-L-----LGVPVI 62 (181)
T ss_pred CcEEEECCCccccC----C--CCceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChH--H---Hh-h-----cCCcEe
Confidence 46899999999999 3 499999999999999999999887 8999999985532 1 11 1 123444
Q ss_pred Ecc-CCcChHHHHHHHHhcCCCCcEEEEcCCc--ccCCChhHHHHHHHhcCceE
Q 012817 83 TVP-EDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV 133 (456)
Q Consensus 83 ~~~-~~~gt~~al~~~~~~l~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~ 133 (456)
..+ ...|+.++++.+++.+..+.+++++||+ +....++.+++.+ ..+.++
T Consensus 63 ~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 115 (181)
T cd02503 63 PDEPPGKGPLAGILAALRAAPADWVLVLACDMPFLPPELLERLLAAA-EEGADA 115 (181)
T ss_pred eCCCCCCCCHHHHHHHHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence 333 2478899999999888767899999994 5566788888876 334443
No 124
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.38 E-value=6.6e-13 Score=127.02 Aligned_cols=117 Identities=18% Similarity=0.308 Sum_probs=92.8
Q ss_pred hccccccCCCcccCCCceeCCC-----CEeCCCcEEC-----CCCEECCCCEECCCCeEee-eEECCCCEECCCcEEeCe
Q 012817 330 IGEANHLSGYNFSAQNNIIHPS-----AELGSKTTVG-----PHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNS 398 (456)
Q Consensus 330 l~~~~~~~~~~~~~~~~~i~~~-----~~i~~~~~i~-----~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~s 398 (456)
+..+..+.+...++.++.|+|+ +.|+.++.|. +++.|+++|.||+.+.+++ +.|++++.||+.|.+.++
T Consensus 277 I~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a 356 (460)
T COG1207 277 IEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKA 356 (460)
T ss_pred EecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecc
Confidence 4444444444455566666666 4445555443 3566788888888888886 999999999999999999
Q ss_pred EECCCCEECCCcEEcCeEECCCCEECCCcEe--------cCeEECCCCEECCCcEE
Q 012817 399 VVMNHVTIGDGCSIQGSVICSNAQLQERVAL--------KDCQVGQGYVVSAGCEY 446 (456)
Q Consensus 399 ~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i--------~~~~i~~~~~v~~~~~~ 446 (456)
.|+.++++++-+.|+++.||.++.||+|++. ..++||+++.||.++.+
T Consensus 357 ~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~L 412 (460)
T COG1207 357 TIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQL 412 (460)
T ss_pred cccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcE
Confidence 9999999999999999999999999999976 24899999999888764
No 125
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.38 E-value=2.1e-12 Score=132.19 Aligned_cols=101 Identities=19% Similarity=0.283 Sum_probs=66.3
Q ss_pred CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCE
Q 012817 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQ 422 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~ 422 (456)
++..|++++.|++++.|. ++.|+++|.|+++|.|.+++||++|.||+++.|. +++|+++|.||+++.+.+++|++++.
T Consensus 278 ~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~ 356 (451)
T TIGR01173 278 GKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSK 356 (451)
T ss_pred CceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcE
Confidence 344444444444444442 4567777777777878788888888888888887 68888888888887777666666555
Q ss_pred ECCCcEecCeEECCCCEECCCcE
Q 012817 423 LQERVALKDCQVGQGYVVSAGCE 445 (456)
Q Consensus 423 I~~~~~i~~~~i~~~~~v~~~~~ 445 (456)
|++.+.+.+|.||+++.|++++.
T Consensus 357 i~~~~~i~~~~Ig~~~~ig~~~~ 379 (451)
T TIGR01173 357 AGHLSYLGDAEIGSNVNIGAGTI 379 (451)
T ss_pred ecceeeEeeeEEcCCcEECCCeE
Confidence 55555444444444444444433
No 126
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.37 E-value=1.8e-11 Score=104.08 Aligned_cols=93 Identities=20% Similarity=0.336 Sum_probs=42.0
Q ss_pred CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEeC---------eEECCCCEECCCcEEc-
Q 012817 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCSIQ- 413 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~~---------s~i~~~~~ig~~~~i~- 413 (456)
.+.+++++.|.+.+.+..++.|+++|.|+.++.|. +++||++|.|++++.|.+ ++|++++.||.++.|.
T Consensus 13 ~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~ 92 (139)
T cd03350 13 GAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVE 92 (139)
T ss_pred CCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECC
Confidence 33333333333333344444444444444444443 245555555555555532 3444555555555543
Q ss_pred CeEECCCCEECCCcEec-CeEECCC
Q 012817 414 GSVICSNAQLQERVALK-DCQVGQG 437 (456)
Q Consensus 414 ~~ii~~~~~I~~~~~i~-~~~i~~~ 437 (456)
++.|++++.|+++++|. ++.|+++
T Consensus 93 gv~Ig~~~~Ig~g~~V~~~~~I~~~ 117 (139)
T cd03350 93 GVIVGKGAVLAAGVVLTQSTPIYDR 117 (139)
T ss_pred CCEECCCCEEcCCCEEcCCeEeccc
Confidence 45555555555544443 3444444
No 127
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.37 E-value=5e-12 Score=117.91 Aligned_cols=120 Identities=21% Similarity=0.303 Sum_probs=87.3
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~ 81 (456)
+.+||||||.|+|| +...||+|++++|+|||+|+++.+... ++++++|+++.... +.++..+... ...+.+
T Consensus 25 i~aIILAAG~gsRm----g~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~-~~~~~~~~~~---~~~i~~ 96 (252)
T PLN02728 25 VSVILLAGGVGKRM----GANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYR-DVFEEAVENI---DVPLKF 96 (252)
T ss_pred eEEEEEcccccccC----CCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHH-HHHHHHHHhc---CCceEE
Confidence 57899999999999 666899999999999999999999884 79999999974422 2333333221 112333
Q ss_pred EEccCCcChHHHHHHHHhcCCCCcEEEEcCC----cccCCChhHHHHHHHhcCce
Q 012817 82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGD----LVSDVPPGAVTAAHRRHDAV 132 (456)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D----~i~~~~l~~~l~~~~~~~a~ 132 (456)
.....+..++++.+++.+..+..+|+.+| ++....+..+++...+.++.
T Consensus 97 --v~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga~ 149 (252)
T PLN02728 97 --ALPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAA 149 (252)
T ss_pred --cCCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCeE
Confidence 34556678899999888754444556666 55566788999888777654
No 128
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.36 E-value=5.8e-12 Score=111.49 Aligned_cols=114 Identities=25% Similarity=0.486 Sum_probs=84.9
Q ss_pred ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEE------eC-------------eEE
Q 012817 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKV------VN-------------SVV 400 (456)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i------~~-------------s~i 400 (456)
.+++.++|+|+|.|++++.||+.|+|+++++|++++.|++ .+|-..++||++++| +. -+|
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence 4667888888888888888888888888888888887763 444444455554444 31 257
Q ss_pred CCCCEECCCcEEc-C-------eEECCCCEECCCcEe-cCeEECCCCEECCCcEEcCCeeeec
Q 012817 401 MNHVTIGDGCSIQ-G-------SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGESLARK 454 (456)
Q Consensus 401 ~~~~~ig~~~~i~-~-------~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~~~~~~~ 454 (456)
+++++|-+++++. + +.||+++.+.+++.| ++|+||.+++..+++.+.|++.++-
T Consensus 85 G~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD 147 (260)
T COG1043 85 GDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGD 147 (260)
T ss_pred CCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECC
Confidence 7777777777774 2 678888888888866 5999999999999999999877643
No 129
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.36 E-value=9.2e-12 Score=95.18 Aligned_cols=76 Identities=21% Similarity=0.454 Sum_probs=63.9
Q ss_pred CCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC-eEECCCCE
Q 012817 361 GPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-CQVGQGYV 439 (456)
Q Consensus 361 ~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~-~~i~~~~~ 439 (456)
++++.|++++.|+++ ++|+++|.||++++|.+|+++++++|++++.|.+|++++++.|++++.+.+ ++|++++.
T Consensus 3 ~~~~~I~~~~~i~~~-----~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 3 DPSAKIGKTAKIGPN-----VVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CCCCEECCCCEECCC-----CEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceE
Confidence 445555555555554 488999999999999999999999999999999999999999999998875 78888877
Q ss_pred EC
Q 012817 440 VS 441 (456)
Q Consensus 440 v~ 441 (456)
|+
T Consensus 78 i~ 79 (80)
T cd05824 78 IK 79 (80)
T ss_pred EC
Confidence 65
No 130
>PLN02472 uncharacterized protein
Probab=99.35 E-value=1.2e-11 Score=114.14 Aligned_cols=97 Identities=15% Similarity=0.256 Sum_probs=65.6
Q ss_pred CCceeCCCCEeCCCcEECCC---CEECCCCEECCCCeEe-----------eeEECCCCEECCCcEEeCeEECCCCEECCC
Q 012817 344 QNNIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDG 409 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~i~-----------~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~ 409 (456)
++..|++++.|++++.+.++ ..||++|.|+++|.|+ +++||++|.||++|.|.+|+|+++|.||.+
T Consensus 76 G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~ 155 (246)
T PLN02472 76 GQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQH 155 (246)
T ss_pred cCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEECCC
Confidence 34445555555555544332 4567777777777774 488999999999999988888888888888
Q ss_pred cEEc-CeEECCCCEECCCcEec-CeEECCCCEE
Q 012817 410 CSIQ-GSVICSNAQLQERVALK-DCQVGQGYVV 440 (456)
Q Consensus 410 ~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v 440 (456)
|.|. +++|++++.|++++++. +..|.++.++
T Consensus 156 svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~ 188 (246)
T PLN02472 156 SILMEGSLVETHSILEAGSVLPPGRRIPTGELW 188 (246)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence 8774 77777777777655443 3444444443
No 131
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.35 E-value=7.7e-12 Score=112.54 Aligned_cols=119 Identities=19% Similarity=0.225 Sum_probs=85.4
Q ss_pred eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhh-HHHHhhhhhhccCccceEEE
Q 012817 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA-LRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~-~~i~~~~~~~~~~~~~i~~~ 82 (456)
.+||||||.|+|| +.+|+|++++|+|||+|+++.+.+.++++++|+++..... ..+..+.. ...++.++
T Consensus 2 ~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~----~~~~~~~~ 71 (190)
T TIGR03202 2 VAIYLAAGQSRRM------GENKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLL----ADERIMLV 71 (190)
T ss_pred eEEEEcCCccccC------CCCceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhh----cCCCeEEE
Confidence 5899999999999 3589999999999999999988888899999999754211 11221111 11234444
Q ss_pred EccC-CcChHHHHHHHHhcCC---CCcEEEEcCC--cccCCChhHHHHHHHhcCce
Q 012817 83 TVPE-DVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV 132 (456)
Q Consensus 83 ~~~~-~~gt~~al~~~~~~l~---~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~ 132 (456)
..++ ..|+..+++.+++++. .+.+++++|| ++....+..+++...+....
T Consensus 72 ~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~ 127 (190)
T TIGR03202 72 CCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDD 127 (190)
T ss_pred ECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 4333 3588899999988752 4669999999 56666788888876554433
No 132
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.35 E-value=2.2e-11 Score=103.63 Aligned_cols=96 Identities=19% Similarity=0.239 Sum_probs=47.8
Q ss_pred CCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc---------CeEEC
Q 012817 349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ---------GSVIC 418 (456)
Q Consensus 349 ~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~---------~~ii~ 418 (456)
+|++.|++++.|++++.|.+.+.|+.++ .||++|.|++++.|. ++.|+++|.|+.++.++ .++|+
T Consensus 5 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~-----~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig 79 (139)
T cd03350 5 PPGAIIRDGAFIGPGAVLMMPSYVNIGA-----YVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIE 79 (139)
T ss_pred CCCcEECCCCEECCCCEECCCCEEccCC-----EECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEEC
Confidence 3444444444444444444444443333 333333333333333 33444444444444443 35666
Q ss_pred CCCEECCCcEe-cCeEECCCCEECCCcEEcCC
Q 012817 419 SNAQLQERVAL-KDCQVGQGYVVSAGCEYKGE 449 (456)
Q Consensus 419 ~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~~ 449 (456)
+++.|+++++| .++.|++++.|++++.+...
T Consensus 80 ~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~ 111 (139)
T cd03350 80 DDVFIGANCEVVEGVIVGKGAVLAAGVVLTQS 111 (139)
T ss_pred CCCEECCCCEECCCCEECCCCEEcCCCEEcCC
Confidence 66666666666 36666666666666666543
No 133
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.35 E-value=9.5e-12 Score=102.92 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=70.9
Q ss_pred CCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCc
Q 012817 349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 427 (456)
Q Consensus 349 ~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~ 427 (456)
++++.|++++.|++++.|+++|.|++++.|. +++||++|.|++++.+.++.+ .+..+...+.+++++|++++.|++++
T Consensus 2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~~~~~Ig~~~~Ig~~~ 80 (119)
T cd03358 2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWELKGTTVKRGASIGANA 80 (119)
T ss_pred CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-CccccccccccCCcEECCCcEECcCC
Confidence 4555666666666677777777777777774 478888999888888877544 33444556777788888888888888
Q ss_pred Eec-CeEECCCCEECCCcEEcC
Q 012817 428 ALK-DCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 428 ~i~-~~~i~~~~~v~~~~~~~~ 448 (456)
++. +++|++++.|++++.+..
T Consensus 81 ~v~~~~~ig~~~~i~~~~~v~~ 102 (119)
T cd03358 81 TILPGVTIGEYALVGAGAVVTK 102 (119)
T ss_pred EEeCCcEECCCCEEccCCEEeC
Confidence 774 577888888877777654
No 134
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.35 E-value=6.6e-12 Score=113.25 Aligned_cols=115 Identities=23% Similarity=0.288 Sum_probs=84.9
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
|+|.+||||||.|+|| . +.||+|+|++|+|||+|+++.+. .++++++|+++... +... .. .+.
T Consensus 2 ~~~~~vILA~G~s~Rm----~-~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~--~~~~----~~-----~~~ 64 (193)
T PRK00317 2 PPITGVILAGGRSRRM----G-GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNL--ARYA----AF-----GLP 64 (193)
T ss_pred CCceEEEEcCCCcccC----C-CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCCh--HHHH----hc-----CCc
Confidence 5789999999999999 3 47999999999999999999998 67999999887431 1111 11 122
Q ss_pred EEEccC--CcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCce
Q 012817 81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV 132 (456)
Q Consensus 81 ~~~~~~--~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~ 132 (456)
++.... ..|+..+++.+++....+.+++++|| ++....++.+++.+.+....
T Consensus 65 ~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 120 (193)
T PRK00317 65 VIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDAD 120 (193)
T ss_pred EEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCc
Confidence 332221 26788999988887766779999999 45566788888876544333
No 135
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.35 E-value=7.3e-12 Score=100.72 Aligned_cols=80 Identities=25% Similarity=0.465 Sum_probs=75.2
Q ss_pred CEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcCC
Q 012817 370 SQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE 449 (456)
Q Consensus 370 ~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~ 449 (456)
+.|++++.|.+|+||++|.|+ ++.|.+|+|++++.||+++.|.+|+|++++.|+.++.+.+++|++++.|++++.+.+.
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 567778888889999999999 9999999999999999999999999999999999999999999999999999999886
Q ss_pred e
Q 012817 450 S 450 (456)
Q Consensus 450 ~ 450 (456)
.
T Consensus 81 ~ 81 (104)
T cd04651 81 P 81 (104)
T ss_pred c
Confidence 4
No 136
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.34 E-value=5.3e-12 Score=129.64 Aligned_cols=107 Identities=14% Similarity=0.277 Sum_probs=65.6
Q ss_pred CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCC--------------
Q 012817 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDG-------------- 409 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~-------------- 409 (456)
.+.|++++.|++++.| .+++|+++|.|++++.|.+++||++|.||+++.|. +++|++++.|+++
T Consensus 288 ~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i 366 (481)
T PRK14358 288 QTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKA 366 (481)
T ss_pred CcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCccc
Confidence 3334444444444443 23445555666665555556666666666666655 4555555555554
Q ss_pred ---cEEcCeEECCCCEECCCcEec--------CeEECCCCEECCCcEEcCCeee
Q 012817 410 ---CSIQGSVICSNAQLQERVALK--------DCQVGQGYVVSAGCEYKGESLA 452 (456)
Q Consensus 410 ---~~i~~~ii~~~~~I~~~~~i~--------~~~i~~~~~v~~~~~~~~~~~~ 452 (456)
+.+++++|+++|.||+++++. +++||+++.+++++.+.+....
T Consensus 367 g~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~I 420 (481)
T PRK14358 367 GHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVV 420 (481)
T ss_pred CceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEE
Confidence 444668888999999998774 3688888888888776655543
No 137
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.34 E-value=5e-12 Score=129.48 Aligned_cols=104 Identities=13% Similarity=0.302 Sum_probs=59.9
Q ss_pred CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECC--------------
Q 012817 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGD-------------- 408 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~-------------- 408 (456)
+...|++++.|++++.|. ++.|+++|.|++++.|.+++||++|.||+++.|. +++|++++.||+
T Consensus 282 ~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~ 360 (456)
T PRK09451 282 GNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSK 360 (456)
T ss_pred cCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCc
Confidence 344455555555555552 4555555566555555555555666655555555 444554444444
Q ss_pred ---CcEEcCeEECCCCEECCCcEec--------CeEECCCCEECCCcEEcC
Q 012817 409 ---GCSIQGSVICSNAQLQERVALK--------DCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 409 ---~~~i~~~ii~~~~~I~~~~~i~--------~~~i~~~~~v~~~~~~~~ 448 (456)
.+.+++|.||++|.||+++++. .++||+++.|+.++.+..
T Consensus 361 ~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~ 411 (456)
T PRK09451 361 AGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVA 411 (456)
T ss_pred cCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeC
Confidence 4445567788888888877652 356666666666665443
No 138
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.34 E-value=3.3e-11 Score=109.82 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=13.2
Q ss_pred eEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817 415 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 447 (456)
Q Consensus 415 ~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~ 447 (456)
+.|+++|.|+.++++. +++|+++++|++++.+.
T Consensus 151 ~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~ 184 (205)
T cd03352 151 TTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVT 184 (205)
T ss_pred cEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEe
Confidence 3333333334333332 34444444444444433
No 139
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.34 E-value=1.7e-11 Score=112.87 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=16.0
Q ss_pred eEECCCCEECCCcEEc-CeEECCCCEECCCcEe
Q 012817 398 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL 429 (456)
Q Consensus 398 s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i 429 (456)
++|+++|.||.+|.|. +++|+++++||+|++|
T Consensus 174 ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI 206 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI 206 (269)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence 3455555555555553 4555555555555444
No 140
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.34 E-value=9.2e-12 Score=112.80 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=84.7
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
|++.+||||||.|+|| +.+|+|++++|+|||+|+++.+... +++++|+++..+ ....... ..+.
T Consensus 6 ~~~~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~~---~~~~~~~------~~~~ 69 (200)
T PRK02726 6 NNLVALILAGGKSSRM------GQDKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWPE---RYQSLLP------PGCH 69 (200)
T ss_pred CCceEEEEcCCCcccC------CCCceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCHH---HHHhhcc------CCCe
Confidence 5678999999999999 3589999999999999999999754 789998886432 2222111 1244
Q ss_pred EEEccC-CcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHh
Q 012817 81 VATVPE-DVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRR 128 (456)
Q Consensus 81 ~~~~~~-~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~ 128 (456)
++.... ..|+.++++.+++.+..+.+++++|| ++....++.+++....
T Consensus 70 ~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 70 WLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred EecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 443323 37899999999988876789999999 5666678888887644
No 141
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.34 E-value=3.8e-11 Score=108.84 Aligned_cols=98 Identities=23% Similarity=0.405 Sum_probs=61.0
Q ss_pred ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEE
Q 012817 346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQL 423 (456)
Q Consensus 346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I 423 (456)
..+++.+.+++++.|++++.|+++|+|++++ .||++|.|++++.|. ++.|++++.|+.++.+. ++.|++++.|
T Consensus 88 ~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~-----~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i 162 (201)
T TIGR03570 88 TLIHPSAIVSPSASIGEGTVIMAGAVINPDV-----RIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFI 162 (201)
T ss_pred EEecCCeEECCCCEECCCCEECCCCEECCCC-----EECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEE
Confidence 3444555555555555555555555554443 566666666666665 56667777777777775 6777777777
Q ss_pred CCCcEec-CeEECCCCEECCCcEEcC
Q 012817 424 QERVALK-DCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 424 ~~~~~i~-~~~i~~~~~v~~~~~~~~ 448 (456)
++++++. ++.|+++++|++++.+..
T Consensus 163 g~~~~v~~~~~i~~~~~i~~~~~v~~ 188 (201)
T TIGR03570 163 GAGATIIQGVTIGAGAIVGAGAVVTK 188 (201)
T ss_pred CCCCEEeCCCEECCCCEECCCCEECC
Confidence 7777663 677777777777777654
No 142
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.33 E-value=2.2e-11 Score=110.87 Aligned_cols=118 Identities=26% Similarity=0.388 Sum_probs=85.5
Q ss_pred eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
-+||+|||.|+|| +.+.||++++++|+|+|.|+++.+.+. .+++++|++.+.+ .+++++...+ ..+.++
T Consensus 2 ~aIilAaG~G~R~----g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~-~~~~~~~~~~-----~~v~iv 71 (221)
T PF01128_consen 2 AAIILAAGSGSRM----GSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPED-IDYVEELLSK-----KKVKIV 71 (221)
T ss_dssp EEEEEESS-STCC----TSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGG-HHHHHHHHHH-----TTEEEE
T ss_pred EEEEeCCccchhc----CcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchh-HHHHHHhhcC-----CCEEEe
Confidence 5899999999999 778999999999999999999999885 5899999997543 3455555544 234443
Q ss_pred EccCCcChHHHHHHHHhcCCCC--cEEEEcCC--cccCCChhHHHHHHHh-cCceE
Q 012817 83 TVPEDVGTAGALRAIAHHLTAK--DVLVVSGD--LVSDVPPGAVTAAHRR-HDAVV 133 (456)
Q Consensus 83 ~~~~~~gt~~al~~~~~~l~~~--~~lv~~~D--~i~~~~l~~~l~~~~~-~~a~~ 133 (456)
.......++++++++.+... .+++..+= ++....++++++..++ .++.+
T Consensus 72 --~GG~tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai 125 (221)
T PF01128_consen 72 --EGGATRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIEAAREGHGAAI 125 (221)
T ss_dssp --E--SSHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEE
T ss_pred --cCChhHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEE
Confidence 57788899999999887543 45555444 6666679999998877 55443
No 143
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.33 E-value=1.8e-11 Score=109.59 Aligned_cols=76 Identities=18% Similarity=0.349 Sum_probs=60.3
Q ss_pred EECCCCEECCCCeEe-----eeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCC
Q 012817 365 MLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQG 437 (456)
Q Consensus 365 ~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~ 437 (456)
.|+++|.|+++|.|+ +++|+++|.||+++.+.+|+|+++|.||.++.+. +++|++++.|+++++|. +..+.++
T Consensus 51 ~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~ 130 (196)
T PRK13627 51 IVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKR 130 (196)
T ss_pred EECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCC
Confidence 456677777777775 4789999999999999999999999999998885 78888888888888665 4555555
Q ss_pred CEE
Q 012817 438 YVV 440 (456)
Q Consensus 438 ~~v 440 (456)
+++
T Consensus 131 ~~~ 133 (196)
T PRK13627 131 QLL 133 (196)
T ss_pred cEE
Confidence 443
No 144
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.33 E-value=2.2e-11 Score=97.05 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=65.3
Q ss_pred CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCE
Q 012817 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQ 422 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~ 422 (456)
...++++.+.|++++.+.++++|+++|.|++++.|.+ +.||++|.||. .|.+|+|++++.+++++.|++++|++++.
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCE
Confidence 4566777777777777777777888888877777764 78888888865 56788888888888888888888888888
Q ss_pred ECCCcEecC
Q 012817 423 LQERVALKD 431 (456)
Q Consensus 423 I~~~~~i~~ 431 (456)
|++++...+
T Consensus 88 ig~~~~~~~ 96 (101)
T cd05635 88 LGAGTNNSD 96 (101)
T ss_pred ECCCceecc
Confidence 887766543
No 145
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.32 E-value=1.6e-11 Score=93.55 Aligned_cols=77 Identities=25% Similarity=0.489 Sum_probs=67.0
Q ss_pred eCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECC
Q 012817 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQE 425 (456)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~ 425 (456)
|++++.|++++.|. ++.|+++|.|++++.|.+++|++++.|++++.|.+++|++++.|++++.+. +++|++++.||+
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence 56777777778775 688999999999999999999999999999999999999999999998887 788888877763
No 146
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.32 E-value=5.9e-11 Score=106.90 Aligned_cols=98 Identities=22% Similarity=0.434 Sum_probs=55.6
Q ss_pred ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEE
Q 012817 346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQL 423 (456)
Q Consensus 346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I 423 (456)
..+++.+.+.+++.++.++.|+++|+|++++ .||++|.|++++.|. ++.|+++|.|+.++.+. +++|+++|.|
T Consensus 85 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~-----~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i 159 (197)
T cd03360 85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDA-----RIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFI 159 (197)
T ss_pred eEECCCeEECCCCEECCCCEEcCCCEECCCC-----EECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEE
Confidence 3444444444444555555555555554444 445555555555554 45556666666666664 5666666666
Q ss_pred CCCcEec-CeEECCCCEECCCcEEcC
Q 012817 424 QERVALK-DCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 424 ~~~~~i~-~~~i~~~~~v~~~~~~~~ 448 (456)
+.++.+. ++.|++++.|++++.+..
T Consensus 160 g~~~~v~~~~~ig~~~~v~~~~~v~~ 185 (197)
T cd03360 160 GAGATIIQGVTIGAGAIIGAGAVVTK 185 (197)
T ss_pred CCCCEEcCCCEECCCCEECCCCEEcC
Confidence 6666654 466677777776666554
No 147
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.32 E-value=2.6e-11 Score=111.71 Aligned_cols=70 Identities=24% Similarity=0.373 Sum_probs=36.1
Q ss_pred CCEECCCCeEee-eEECCCCEECCCcEEe-CeEEC--------CCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECC
Q 012817 369 GSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVM--------NHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQ 436 (456)
Q Consensus 369 ~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-~s~i~--------~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~ 436 (456)
++.||++|.|.. ++||++|.||++|.|. ++.|+ .+|+||++|+|+ +|.|.+++.||++++|. +++|++
T Consensus 129 ga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~ 208 (269)
T TIGR00965 129 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQ 208 (269)
T ss_pred CcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECC
Confidence 344555554443 4555555555555555 33343 345666666665 56666666665444443 344444
Q ss_pred CC
Q 012817 437 GY 438 (456)
Q Consensus 437 ~~ 438 (456)
++
T Consensus 209 ~~ 210 (269)
T TIGR00965 209 ST 210 (269)
T ss_pred CC
Confidence 33
No 148
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.31 E-value=8.6e-12 Score=127.83 Aligned_cols=99 Identities=17% Similarity=0.330 Sum_probs=56.5
Q ss_pred CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCEE
Q 012817 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQL 423 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~I 423 (456)
+..|++++.|++++.| .++.|+++|.|+++|.|.+++||++|.||+++.|. +++|+++|.||+++.+.+++|++++.+
T Consensus 287 ~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i 365 (456)
T PRK14356 287 ASRIARGAVIHSHCWL-RDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKA 365 (456)
T ss_pred ceEECCCCEECCCeEE-EeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEe
Confidence 3444444444444444 24556666666666666666666666666666665 566666666666666655555555555
Q ss_pred CCCcEecCeEECCCCEECCCc
Q 012817 424 QERVALKDCQVGQGYVVSAGC 444 (456)
Q Consensus 424 ~~~~~i~~~~i~~~~~v~~~~ 444 (456)
++++.+.+++||+++.|++++
T Consensus 366 ~~~~~ig~~~ig~~~~Ig~~~ 386 (456)
T PRK14356 366 NHLTYLGDAEIGAGANIGAGT 386 (456)
T ss_pred cccccccCeEECCCCEECCCc
Confidence 555444444444444444443
No 149
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.31 E-value=1.6e-11 Score=109.99 Aligned_cols=117 Identities=22% Similarity=0.318 Sum_probs=85.3
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
+.+||||||.|+|| + ..||+|++++|+|||+|+++.+.. .+++++|++.+... . +... ..++.++
T Consensus 1 ~~~iILAgG~s~Rm----g-~~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~--~---~~~~----~~~~~~i 65 (186)
T TIGR02665 1 ISGVILAGGRARRM----G-GRDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPE--R---YAQA----GFGLPVV 65 (186)
T ss_pred CeEEEEcCCccccC----C-CCCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHH--H---Hhhc----cCCCcEE
Confidence 35899999999999 3 259999999999999999999975 58999888864321 1 1111 1123333
Q ss_pred Ec--cCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCceEE
Q 012817 83 TV--PEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT 134 (456)
Q Consensus 83 ~~--~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t 134 (456)
.. +...|+.++++.+++.+..+.++++.|| ++....++.+++.+.+.++.++
T Consensus 66 ~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 121 (186)
T TIGR02665 66 PDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEASDADIA 121 (186)
T ss_pred ecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEE
Confidence 32 2347999999999988876789999999 4556668888887665444443
No 150
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.30 E-value=4.4e-11 Score=99.62 Aligned_cols=73 Identities=19% Similarity=0.348 Sum_probs=48.4
Q ss_pred CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe----e-eEECCCCEECCCcEEeCeEECCC----CEECCCcEEc-
Q 012817 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----R-SVIGRHCRIGSNVKVVNSVVMNH----VTIGDGCSIQ- 413 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~-s~Ig~~~~ig~~~~i~~s~i~~~----~~ig~~~~i~- 413 (456)
+.+.+.+++.|++++.|.+++++..++.|+++|.|. . ++|+++|.||+++.|. +.+..+ +.||++|+|+
T Consensus 6 ~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG~ 84 (147)
T cd04649 6 DADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLLGA 84 (147)
T ss_pred CCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEECC
Confidence 566677777777777777777777777777777665 3 6777778777777776 444444 5555555544
Q ss_pred CeEE
Q 012817 414 GSVI 417 (456)
Q Consensus 414 ~~ii 417 (456)
+|.|
T Consensus 85 ga~I 88 (147)
T cd04649 85 NSGI 88 (147)
T ss_pred CCEE
Confidence 4444
No 151
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.30 E-value=4.2e-11 Score=103.67 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=80.7
Q ss_pred CCceeCCCCEeCCCcEECC---CCEECCCCEECCCCeEee-----eEECCCCEECCCcEEeCeEECCCCEECCCcEEc-C
Q 012817 344 QNNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G 414 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~---~~~i~~~~~I~~~~~i~~-----s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~ 414 (456)
++..+++++.|++++.|.+ ++.||++|.|+++|.|.. ++||++|.|+.+|.+.+++|++++.||.++.+. +
T Consensus 16 g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~ 95 (153)
T cd04645 16 GDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDG 95 (153)
T ss_pred EeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCC
Confidence 3455566666666666644 357888999999998886 599999999999999999999999999999997 8
Q ss_pred eEECCCCEECCCcEec-CeEECCCCEE-CCC
Q 012817 415 SVICSNAQLQERVALK-DCQVGQGYVV-SAG 443 (456)
Q Consensus 415 ~ii~~~~~I~~~~~i~-~~~i~~~~~v-~~~ 443 (456)
++|++++.|++++.+. ++.+++++++ +..
T Consensus 96 ~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~ 126 (153)
T cd04645 96 AVIGKGSIVAAGSLVPPGKVIPPGSLVAGSP 126 (153)
T ss_pred CEECCCCEECCCCEECCCCEeCCCCEEeCCc
Confidence 9999999999888774 5677777776 444
No 152
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.30 E-value=2.1e-11 Score=110.27 Aligned_cols=124 Identities=22% Similarity=0.253 Sum_probs=90.2
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i 79 (456)
|++.+||||||.|+|| +...||++++++|+||++|+|+.+.... +++|+|+++..+. .++.++.. +... .
T Consensus 3 ~~~~~vilAaG~G~R~----~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~-~~~~~~~~--~~~~--~ 73 (230)
T COG1211 3 MMVSAVILAAGFGSRM----GNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDD-PYFEKLPK--LSAD--K 73 (230)
T ss_pred ceEEEEEEcCcccccc----CCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhh-HHHHHhhh--hccC--C
Confidence 4678999999999999 7789999999999999999999998765 7999999975432 35555442 1112 2
Q ss_pred EEEEccCCcChHHHHHHHHhcCC---CCcEEEEcCC--cccCCChhHHHHHHHhcCceE
Q 012817 80 EVATVPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVV 133 (456)
Q Consensus 80 ~~~~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~ 133 (456)
++....+.....++++++++.+. ++.||+..+- ++....++++++.....++.+
T Consensus 74 ~v~~v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai 132 (230)
T COG1211 74 RVEVVKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAI 132 (230)
T ss_pred eEEEecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEE
Confidence 33334677888999999998886 2335555554 666667888885544444443
No 153
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.29 E-value=5.9e-11 Score=103.57 Aligned_cols=99 Identities=23% Similarity=0.320 Sum_probs=64.9
Q ss_pred CCCceeCCCCEeCCC---cEECCCCEECCCCEECCCCeE-------eeeEECCCCEECCCcEEeCeEECCCCEECCCcEE
Q 012817 343 AQNNIIHPSAELGSK---TTVGPHCMLGEGSQMGDKCSV-------KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI 412 (456)
Q Consensus 343 ~~~~~i~~~~~i~~~---~~i~~~~~i~~~~~I~~~~~i-------~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i 412 (456)
++.+.|+|++.|.+. +.||++|.|+++|.|.+.+.+ .+++||+++.|++++.+.+++|++++.||+++.|
T Consensus 25 g~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~I 104 (161)
T cd03359 25 NGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVI 104 (161)
T ss_pred CCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEE
Confidence 344555555544433 244444444444444332211 1357999999999999999999999999998888
Q ss_pred c-CeEECCCCEECCCcEec-CeEECCCCEEC
Q 012817 413 Q-GSVICSNAQLQERVALK-DCQVGQGYVVS 441 (456)
Q Consensus 413 ~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~ 441 (456)
+ +++|++++.|++++++. ++.|+++++++
T Consensus 105 g~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~ 135 (161)
T cd03359 105 GRRCIIKDCVKILDGTVVPPDTVIPPYSVVS 135 (161)
T ss_pred cCCCEECCCcEECCCCEECCCCEeCCCCEEe
Confidence 6 78888888888776663 56666666664
No 154
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.28 E-value=2.6e-11 Score=123.35 Aligned_cols=29 Identities=7% Similarity=0.005 Sum_probs=20.8
Q ss_pred eeeEEEEecCcchhhcccCHHHHHHHhHhh
Q 012817 300 HKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (456)
Q Consensus 300 ~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~ 329 (456)
.++..|..+ ..+|.+++++++|..++..+
T Consensus 205 ~~v~~~~~~-~~~w~dI~t~~dl~~a~~~l 233 (430)
T PRK14359 205 ETIKAVFVD-EENFMGVNSKFELAKAEEIM 233 (430)
T ss_pred CeEEEEEcC-CCEEeCCCCHHHHHHHHHHH
Confidence 445555332 46899999999999887544
No 155
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.28 E-value=1.6e-11 Score=125.74 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=31.0
Q ss_pred CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee----------------eEECCCCEECCCcEEe-CeEECCCCEEC
Q 012817 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----------------SVIGRHCRIGSNVKVV-NSVVMNHVTIG 407 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~----------------s~Ig~~~~ig~~~~i~-~s~i~~~~~ig 407 (456)
...+++++.|++++.|++++.||++|.|++++.|.+ ++||++|.||+++.|. +++|+++|.||
T Consensus 262 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig 341 (450)
T PRK14360 262 TVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIG 341 (450)
T ss_pred CEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEEC
Confidence 333444444444444444444444444444444443 3444444444444444 34444444444
Q ss_pred CCcEE
Q 012817 408 DGCSI 412 (456)
Q Consensus 408 ~~~~i 412 (456)
+++.+
T Consensus 342 ~~~~i 346 (450)
T PRK14360 342 NFVEI 346 (450)
T ss_pred CCEEE
Confidence 44444
No 156
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.28 E-value=3.4e-11 Score=110.74 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=80.3
Q ss_pred cCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEeC---------eEECCCCE
Q 012817 336 LSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVN---------SVVMNHVT 405 (456)
Q Consensus 336 ~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~~---------s~i~~~~~ 405 (456)
+.....+.+++.|++++.|++++.|++++.||++|.|++++.|. +++||++|.||.++.|.+ ++|+++|.
T Consensus 89 I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~ 168 (231)
T TIGR03532 89 IEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVL 168 (231)
T ss_pred ECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcE
Confidence 33333444567777777777777777788888888888888886 689999999999999974 77888888
Q ss_pred ECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEEC
Q 012817 406 IGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVS 441 (456)
Q Consensus 406 ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v~ 441 (456)
||.++.|. ++.|++++.|++++++.+. +.+++++.
T Consensus 169 IG~gsvI~~g~~Ig~~~~IgagsvV~~d-i~~~~vv~ 204 (231)
T TIGR03532 169 IGANAVILEGVRVGKGAVVAAGAIVTED-VPPNTVVA 204 (231)
T ss_pred ECCCCEEcCCCEECCCCEECCCCEEccc-cCCCcEEE
Confidence 88888884 8888888888888877653 45555543
No 157
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.27 E-value=1.2e-10 Score=107.09 Aligned_cols=121 Identities=15% Similarity=0.214 Sum_probs=87.5
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 83 (456)
|||||+|.|+|| ..|.++|++|+|||+|+++.+.+++ +++|+|.+... .+.+...+. ...+.+..
T Consensus 2 aiIpArG~Skr~-------~~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~~----~i~~~a~~~---g~~v~~~r 67 (222)
T TIGR03584 2 AIIPARGGSKRI-------PRKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDE----EIAEVAKSY---GASVPFLR 67 (222)
T ss_pred EEEccCCCCCCC-------CCccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCCH----HHHHHHHHc---CCEeEEeC
Confidence 799999999999 2699999999999999999999887 67787766543 333333221 11121211
Q ss_pred ----ccCCcChHHHHHHHHhcCC----CCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEee
Q 012817 84 ----VPEDVGTAGALRAIAHHLT----AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS 139 (456)
Q Consensus 84 ----~~~~~gt~~al~~~~~~l~----~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~ 139 (456)
.....++.++++.+++.+. .+.++++.+| ++...+++.+++.+.+.+++..+.+.+
T Consensus 68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~ 133 (222)
T TIGR03584 68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTS 133 (222)
T ss_pred hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeec
Confidence 1234678899988877652 3559999999 666778999999998877776665554
No 158
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.27 E-value=5.2e-11 Score=110.85 Aligned_cols=76 Identities=16% Similarity=0.272 Sum_probs=40.9
Q ss_pred CCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEe---------CeEECCCCEECCCcEEc-CeEECCCCEECCCcEe
Q 012817 361 GPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL 429 (456)
Q Consensus 361 ~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~---------~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i 429 (456)
+.++.|+++|.|+.++.|++ +.||++|.|+.++.|. +++|+++|.||.+|.|. +++|+++++|+++++|
T Consensus 130 ~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV 209 (272)
T PRK11830 130 NIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFL 209 (272)
T ss_pred CCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence 33444555555555544443 3555555555555544 25566666666666663 6666666666666555
Q ss_pred c-CeEECC
Q 012817 430 K-DCQVGQ 436 (456)
Q Consensus 430 ~-~~~i~~ 436 (456)
. ++.|++
T Consensus 210 ~~gt~I~~ 217 (272)
T PRK11830 210 GQSTKIYD 217 (272)
T ss_pred cCCeEECc
Confidence 3 344443
No 159
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.26 E-value=1.2e-10 Score=92.88 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=71.2
Q ss_pred CCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCE
Q 012817 362 PHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYV 439 (456)
Q Consensus 362 ~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~ 439 (456)
+++.+++++.|++++.+. ++.||++|.|++++.|. +++|+++|.||. .+.+|+|++++.|+++++|.+++||+++.
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCE
Confidence 355666666666666664 36899999999999988 688999999975 67899999999999999999999999999
Q ss_pred ECCCcEEcC
Q 012817 440 VSAGCEYKG 448 (456)
Q Consensus 440 v~~~~~~~~ 448 (456)
|++++...+
T Consensus 88 ig~~~~~~~ 96 (101)
T cd05635 88 LGAGTNNSD 96 (101)
T ss_pred ECCCceecc
Confidence 999988665
No 160
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.26 E-value=1.8e-10 Score=104.90 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=33.0
Q ss_pred eEECCCCEECCCcEEe-----CeEECCCCEECCCcEEc-CeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817 381 SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 381 s~Ig~~~~ig~~~~i~-----~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~ 448 (456)
+.|++++.|+.++.+. ++.|++++.++.++.|. ++.|++++.|+.++.+ .++.|++++.|++++.+..
T Consensus 93 v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~ 167 (205)
T cd03352 93 VIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAG 167 (205)
T ss_pred EEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeC
Confidence 3444455555544443 23444455555544443 4555555555555444 2455555555555554443
No 161
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.8e-11 Score=115.30 Aligned_cols=96 Identities=15% Similarity=0.357 Sum_probs=82.8
Q ss_pred ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCC
Q 012817 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSN 420 (456)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~ 420 (456)
..+..++++|++.|++++.| ..++||.+|.||+.++|.+|+|.+|+.||++|.|++|+|+.++.||++|.+.||+|+.+
T Consensus 330 l~g~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~ 408 (433)
T KOG1462|consen 330 LVGADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPG 408 (433)
T ss_pred ccchhhccCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCC
Confidence 34567777888888877777 67889999999999999999999999999999999999999999999999999999999
Q ss_pred CEECCCcEecCeEECCC
Q 012817 421 AQLQERVALKDCQVGQG 437 (456)
Q Consensus 421 ~~I~~~~~i~~~~i~~~ 437 (456)
=+|.++.+..+.++-++
T Consensus 409 yvVeak~~~~~ev~~~~ 425 (433)
T KOG1462|consen 409 YVVEAKGKHGGEVLVSN 425 (433)
T ss_pred cEEcccccccccEeecc
Confidence 99997777666555443
No 162
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.26 E-value=8.1e-11 Score=106.03 Aligned_cols=84 Identities=26% Similarity=0.510 Sum_probs=51.8
Q ss_pred ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEE
Q 012817 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVI 417 (456)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii 417 (456)
++++...+.+.+.++.++.|++++.|++++.||++|.|. +++|+++|.||++|.|+ ++++.++++||++|+|+ +|.|
T Consensus 86 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v 165 (197)
T cd03360 86 LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI 165 (197)
T ss_pred EECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence 334555666666666666666666666666666666664 46666666666666665 55555566666665554 5555
Q ss_pred CCCCEEC
Q 012817 418 CSNAQLQ 424 (456)
Q Consensus 418 ~~~~~I~ 424 (456)
.+++.|+
T Consensus 166 ~~~~~ig 172 (197)
T cd03360 166 IQGVTIG 172 (197)
T ss_pred cCCCEEC
Confidence 5555555
No 163
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.26 E-value=1.3e-10 Score=101.42 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=44.8
Q ss_pred eEECCCCEECCCcEEeC-------------eEECCCCEECCCcEEcCeEECCCCEECCCcEec-CeEECCCCEECCCcEE
Q 012817 381 SVIGRHCRIGSNVKVVN-------------SVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY 446 (456)
Q Consensus 381 s~Ig~~~~ig~~~~i~~-------------s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~ 446 (456)
..||++|.|+++|+|.. ++|++++.|++++.+.+++|++++.|+++++|. +++|++++.|++++.+
T Consensus 43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V 122 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVV 122 (161)
T ss_pred eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEE
Confidence 56777777777777753 368888888888888777777777777777663 4555555555444444
No 164
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.25 E-value=4.9e-11 Score=110.99 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=14.5
Q ss_pred eEECCCCEECCCcEe-cCeEECCCCEECCCcEE
Q 012817 415 SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEY 446 (456)
Q Consensus 415 ~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~ 446 (456)
++|+++|.||.+++| .+++||++++|++++.+
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV 209 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFL 209 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence 444444444444444 24444444444444443
No 165
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.25 E-value=2.7e-11 Score=123.88 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=56.1
Q ss_pred cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEE---------
Q 012817 342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI--------- 412 (456)
Q Consensus 342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i--------- 412 (456)
+++++.|++++.|++.+.|++++.||++|.|+++|.|.+|+||++|.|. .+.+.+|+|++++.||+++.|
T Consensus 252 i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~~~ig~~ 330 (448)
T PRK14357 252 IHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREGTVLKKS 330 (448)
T ss_pred EccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCcccccCC
Confidence 3444555555555555555555566666666666666555666655553 234444555555555555444
Q ss_pred ---------cCeEECCCCEECCCcEecCeEECCCCEECCCcEE
Q 012817 413 ---------QGSVICSNAQLQERVALKDCQVGQGYVVSAGCEY 446 (456)
Q Consensus 413 ---------~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~ 446 (456)
.+++|++++.+++.+++.+++||+++.|++++.+
T Consensus 331 ~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~ 373 (448)
T PRK14357 331 VKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTIT 373 (448)
T ss_pred cEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCccc
Confidence 4444444444444444455666777777666544
No 166
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.25 E-value=9.2e-11 Score=106.32 Aligned_cols=88 Identities=24% Similarity=0.452 Sum_probs=44.8
Q ss_pred CCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-C------eEECCCCEECCCcEEc-
Q 012817 343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-N------SVVMNHVTIGDGCSIQ- 413 (456)
Q Consensus 343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~------s~i~~~~~ig~~~~i~- 413 (456)
.+.+.+++.+.|++++.|++++.|++++.|+++|.|. ++.|+++|.||+++.|+ + +.|+++|.||.++.+.
T Consensus 91 ~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 170 (201)
T TIGR03570 91 HPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQ 170 (201)
T ss_pred cCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeC
Confidence 3445555555555555555555555555555555554 34555555555555544 3 4444444444444443
Q ss_pred CeEECCCCEECCCcEec
Q 012817 414 GSVICSNAQLQERVALK 430 (456)
Q Consensus 414 ~~ii~~~~~I~~~~~i~ 430 (456)
++.|++++.|++++++.
T Consensus 171 ~~~i~~~~~i~~~~~v~ 187 (201)
T TIGR03570 171 GVTIGAGAIVGAGAVVT 187 (201)
T ss_pred CCEECCCCEECCCCEEC
Confidence 44444444444444443
No 167
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.23 E-value=6.7e-11 Score=121.22 Aligned_cols=108 Identities=14% Similarity=0.234 Sum_probs=73.3
Q ss_pred CCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEE---------
Q 012817 343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI--------- 412 (456)
Q Consensus 343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i--------- 412 (456)
.+++.|++++.|++++.|+ ++.||++|.|+.++.|.+++|+++|.||+++.|. ++.|++++.||+++.+
T Consensus 284 ~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~ 362 (459)
T PRK14355 284 SGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGS 362 (459)
T ss_pred eCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCc
Confidence 3444555555555555553 5667777888888888888999999999888887 7778888877776543
Q ss_pred --------cCeEECCCCEECCCcEec--------CeEECCCCEECCCcEEcCCee
Q 012817 413 --------QGSVICSNAQLQERVALK--------DCQVGQGYVVSAGCEYKGESL 451 (456)
Q Consensus 413 --------~~~ii~~~~~I~~~~~i~--------~~~i~~~~~v~~~~~~~~~~~ 451 (456)
++++|+++|.||+++++. +++||+++.|+.++.+.....
T Consensus 363 ~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ 417 (459)
T PRK14355 363 KASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVT 417 (459)
T ss_pred eeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcE
Confidence 346777778888776542 356677777666665554433
No 168
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.23 E-value=1.2e-10 Score=101.84 Aligned_cols=116 Identities=28% Similarity=0.362 Sum_probs=94.1
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~ 81 (456)
+.-+||||+|+|+|| +.+|.|+|+.|+||++++++.+.+++++++++++++.. .+....... ..++.+
T Consensus 5 ~v~~VvLAAGrssRm------G~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~-~~~~~a~~~-----~~~~~~ 72 (199)
T COG2068 5 TVAAVVLAAGRSSRM------GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRV-AEAVEALLA-----QLGVTV 72 (199)
T ss_pred ceEEEEEcccccccC------CCcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcch-hhHHHhhhc-----cCCeEE
Confidence 467899999999999 48999999999999999999999999999999998652 222332222 234667
Q ss_pred EEccCC-cChHHHHHHHHhcCCCC--cEEEEcCC--cccCCChhHHHHHHHhc
Q 012817 82 ATVPED-VGTAGALRAIAHHLTAK--DVLVVSGD--LVSDVPPGAVTAAHRRH 129 (456)
Q Consensus 82 ~~~~~~-~gt~~al~~~~~~l~~~--~~lv~~~D--~i~~~~l~~~l~~~~~~ 129 (456)
+..++. .|.+.+++.+......+ .++++.|| .+...++..+++.+...
T Consensus 73 v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 73 VVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred EeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 766664 79999999998887644 69999999 57888999999988877
No 169
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.22 E-value=1.1e-10 Score=120.33 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=41.8
Q ss_pred eeEECCCCEECCCcEEeCeEECCCCEECCCcEEc--------CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817 380 RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ--------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 380 ~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~--------~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~ 448 (456)
+++|+.++.|+..+.+++|+|+++|.||.++.+. +++||++|.||.++.|. ++.||++++|++|+.+..
T Consensus 357 ~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~ 434 (482)
T PRK14352 357 NATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIRE 434 (482)
T ss_pred ccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcC
Confidence 3444455555554455556666666666666553 26677777777776553 567777777777765543
No 170
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.22 E-value=2.6e-10 Score=94.96 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=61.3
Q ss_pred eeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEEC----CCcEEe-CeEECCCCEECCCcEEc-C----eE
Q 012817 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIG----SNVKVV-NSVVMNHVTIGDGCSIQ-G----SV 416 (456)
Q Consensus 347 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig----~~~~i~-~s~i~~~~~ig~~~~i~-~----~i 416 (456)
.|.|.+.+...+.|+++++|.+++.+..++ .||++|.|. .++.|+ +|.|+++|.|. +.+. + +.
T Consensus 3 ~i~~~~~V~~~a~IG~GtvI~~gavV~~~a-----~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~--~~l~G~~~~pV~ 75 (147)
T cd04649 3 RIADADRVRLGAYLAEGTTVMHEGFVNFNA-----GTLGNCMVEGRISSGVIVGKGSDVGGGASIM--GTLSGGGNNVIS 75 (147)
T ss_pred EecCCCEECCCCEECCCcEECCCCEEccCC-----EECCCeEECCcccCCEEECCCCEECCCCEEE--EECCCCcccCEE
Confidence 345666666666666666666666665555 666666665 444444 44444444444 2232 4 78
Q ss_pred ECCCCEECCCcEecCeEECCCCEECCCcEEcCCe
Q 012817 417 ICSNAQLQERVALKDCQVGQGYVVSAGCEYKGES 450 (456)
Q Consensus 417 i~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~~ 450 (456)
|+++|.||.++.| ++.||++++|++|+.+...+
T Consensus 76 IG~~~~IG~ga~I-gv~IG~~~vIGaGsvV~k~t 108 (147)
T cd04649 76 IGKRCLLGANSGI-GISLGDNCIVEAGLYVTAGT 108 (147)
T ss_pred ECCCCEECCCCEE-eEEECCCCEECCCCEEeCCe
Confidence 8999999999988 78888888888887654433
No 171
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.18 E-value=1.2e-10 Score=119.50 Aligned_cols=64 Identities=23% Similarity=0.388 Sum_probs=34.3
Q ss_pred eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCC
Q 012817 380 RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAG 443 (456)
Q Consensus 380 ~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~ 443 (456)
+++||++|.||+++.|. +++|+++|+||.++.|.+++|++++.|++.+.+.+++||+++.|+++
T Consensus 316 ~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~ 380 (458)
T PRK14354 316 ESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCG 380 (458)
T ss_pred CCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCc
Confidence 45666666666666665 56666666666666555555555554444444444444444443333
No 172
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.18 E-value=1.1e-10 Score=104.17 Aligned_cols=111 Identities=23% Similarity=0.362 Sum_probs=80.9
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
|+|.+||||||+|+|| .+|+|++++||||++|+++.|.... +.++|..... .. . +.. ....
T Consensus 3 ~~~~~vILAGG~srRm-------~dK~l~~~~g~~lie~v~~~L~~~~-~~vvi~~~~~-~~-~---~~~------~g~~ 63 (192)
T COG0746 3 TPMTGVILAGGKSRRM-------RDKALLPLNGRPLIEHVIDRLRPQV-DVVVISANRN-QG-R---YAE------FGLP 63 (192)
T ss_pred CCceEEEecCCccccc-------cccccceeCCeEHHHHHHHHhcccC-CEEEEeCCCc-hh-h---hhc------cCCc
Confidence 4689999999999999 4799999999999999999998774 4455554422 11 1 111 1234
Q ss_pred EEEccCCc-ChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcC
Q 012817 81 VATVPEDV-GTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHD 130 (456)
Q Consensus 81 ~~~~~~~~-gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~ 130 (456)
++...... |+..+++.++++...+.+++++|| ++....++.++....+.+
T Consensus 64 vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 64 VVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred eeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 44333333 999999999999888899999999 455556777777665544
No 173
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.14 E-value=3.2e-10 Score=112.16 Aligned_cols=121 Identities=20% Similarity=0.284 Sum_probs=87.2
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~ 81 (456)
++.+||||||.|+|| . +.||+|+|++|+|||+|+++.+.. .+++++|++.... +.+..++. ...+..
T Consensus 5 ~i~~VILAgG~s~Rm----g-g~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~--~~~~~~~~-----~~~~i~ 71 (366)
T PRK14489 5 QIAGVILAGGLSRRM----N-GRDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDP--ARYQDLFP-----GLPVYP 71 (366)
T ss_pred CceEEEEcCCcccCC----C-CCCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCH--HHHHhhcc-----CCcEEe
Confidence 367999999999999 3 479999999999999999999975 4899998776432 12322211 111111
Q ss_pred EEccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCceEEE
Q 012817 82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (456)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~ 135 (456)
...+...|+..+++.+++.+..+.+++++|| ++....++.+++.+...++++.+
T Consensus 72 d~~~g~~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~ 127 (366)
T PRK14489 72 DILPGFQGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAV 127 (366)
T ss_pred cCCCCCCChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEE
Confidence 1112236888999999988866779999999 46666788888877666666544
No 174
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.12 E-value=6.6e-10 Score=100.40 Aligned_cols=95 Identities=23% Similarity=0.388 Sum_probs=65.9
Q ss_pred CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCe-E------------------------
Q 012817 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS-V------------------------ 399 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s-~------------------------ 399 (456)
+..|++++.|++++.|. ++.||++|.|+.++.|.++.||++|.|++++.|..+ .
T Consensus 19 ~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~ 97 (204)
T TIGR03308 19 ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDD 97 (204)
T ss_pred ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccccccccccccc
Confidence 34556666666666663 677888888888888888999999999999998732 1
Q ss_pred -------ECCCCEECCCcEEcCeEECCCCEECCCcEe-cCeEECCCCEECCCcE
Q 012817 400 -------VMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCE 445 (456)
Q Consensus 400 -------i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~ 445 (456)
...++.||++++| |.++.|.+++.| .+++|+++++|..+..
T Consensus 98 ~~~~~~~~~~~~~Ig~~~~I-----g~~~~I~~gv~Ig~~~~I~~gs~v~~~i~ 146 (204)
T TIGR03308 98 ADFFAWRRAKRVTIGHDVWI-----GHGAVILPGVTIGNGAVIAAGAVVTKDVA 146 (204)
T ss_pred ccccccccCCCeEECCCCEE-----CCCCEECCCCEECCCCEECCCCEECCCCC
Confidence 1134455555555 455555555554 5999999999876643
No 175
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.12 E-value=6.3e-10 Score=91.95 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=36.4
Q ss_pred CcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEE
Q 012817 392 NVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVV 440 (456)
Q Consensus 392 ~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v 440 (456)
++.+.+++|+++|.||.++.+. ++.|++++.|++++.+... +.+++++
T Consensus 62 ~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~~~-i~~~~~~ 110 (119)
T cd03358 62 KWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKD-VPPYALV 110 (119)
T ss_pred ccccCCcEECCCcEECcCCEEeCCcEECCCCEEccCCEEeCc-CCCCeEE
Confidence 4457788899999999998885 6888888888888877654 4544433
No 176
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.11 E-value=1.8e-09 Score=95.68 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=50.4
Q ss_pred CceeCCCCE--eCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeC-------------eEECCCCEECCC
Q 012817 345 NNIIHPSAE--LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN-------------SVVMNHVTIGDG 409 (456)
Q Consensus 345 ~~~i~~~~~--i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~-------------s~i~~~~~ig~~ 409 (456)
+++|.|... +|.++.||+++.|+.+|+|++.+.| .||++|.|+++|.|.. ..+...++||++
T Consensus 59 ~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~ 135 (183)
T PRK10092 59 EAYIEPTFRCDYGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNN 135 (183)
T ss_pred CEEEeCCEEEeecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCC
Confidence 456666663 4667777777777777777766654 8999999999999851 122344555555
Q ss_pred cEEc-CeEECCCCEECCC
Q 012817 410 CSIQ-GSVICSNAQLQER 426 (456)
Q Consensus 410 ~~i~-~~ii~~~~~I~~~ 426 (456)
|+|+ +++|.++++||++
T Consensus 136 v~IG~~a~I~~gv~IG~~ 153 (183)
T PRK10092 136 VWIGGRAVINPGVTIGDN 153 (183)
T ss_pred cEECCCCEECCCCEECCC
Confidence 5553 5555555555533
No 177
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.10 E-value=9.3e-10 Score=102.28 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=15.0
Q ss_pred CceeCCCCEeCCCcEECCCCEECCCCEECCCC
Q 012817 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKC 376 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~ 376 (456)
++.|++.+.|..++.||+++.|+++++|+.++
T Consensus 178 gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nA 209 (341)
T TIGR03536 178 GVRIADTARVRLGAYVGEGTTVMHEGFINFNA 209 (341)
T ss_pred CcEEcCCCeEcCCcEECCCCEEecCCEECcCc
Confidence 44444444444444444444444444444443
No 178
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.10 E-value=8.7e-10 Score=102.47 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=28.8
Q ss_pred CCCceeCCCCEeCCCcEECCCCEECCCCE-ECCCCe---Ee-eeEECCCCEECCCcEE
Q 012817 343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQ-MGDKCS---VK-RSVIGRHCRIGSNVKV 395 (456)
Q Consensus 343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~-I~~~~~---i~-~s~Ig~~~~ig~~~~i 395 (456)
++...|.+++.|++++.|.++++|+.++. +|..+. |. .++||++|.||.+|.|
T Consensus 182 ~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI 239 (341)
T TIGR03536 182 ADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST 239 (341)
T ss_pred cCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE
Confidence 34555555566666666655666655555 444333 22 2455556665555555
No 179
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=6.6e-10 Score=109.41 Aligned_cols=68 Identities=29% Similarity=0.543 Sum_probs=61.6
Q ss_pred cEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECC
Q 012817 358 TTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE 425 (456)
Q Consensus 358 ~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~ 425 (456)
+.+.++++|+++|.|++++.|++ ++||++|.||+++.|.+|+||++|.||+++.|.+|||+++|.||+
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 56677777777788877777775 899999999999999999999999999999999999999999997
No 180
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.07 E-value=7.8e-10 Score=110.60 Aligned_cols=77 Identities=26% Similarity=0.483 Sum_probs=53.2
Q ss_pred CEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcC
Q 012817 370 SQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 370 ~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~ 448 (456)
+.|++++.|.++.||++|.|+. .+.+|+|+++|.||++|.|.+|+|+++|.|++++.|.+|+|++++.|++++.+.+
T Consensus 283 ~~i~~~~~i~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 359 (380)
T PRK05293 283 QYIAENAKVKNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGG 359 (380)
T ss_pred CEECCCCEEecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcC
Confidence 3333444444567777777753 4667777777777777777777777777777777777777777777777777766
No 181
>PRK10191 putative acyl transferase; Provisional
Probab=99.06 E-value=1.6e-09 Score=91.97 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=61.2
Q ss_pred ceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCCcEE--eCeEECCCCEECCCcEEc-CeEECCC
Q 012817 346 NIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV--VNSVVMNHVTIGDGCSIQ-GSVICSN 420 (456)
Q Consensus 346 ~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i--~~s~i~~~~~ig~~~~i~-~~ii~~~ 420 (456)
..|++++.+++++.|++ ++.|++++.||+++ .|+++|.||+.... ..++|+++|.||.++.+. ++.|+++
T Consensus 42 ~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~-----~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~ 116 (146)
T PRK10191 42 YEIQAAATIGRRFTIHHGYAVVINKNVVAGDDF-----TIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNN 116 (146)
T ss_pred cccCCCCEECCCeEECCCCeEEECCCcEECCCC-----EECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCC
Confidence 34455555556666655 45566666666655 55566666654333 235788888888888885 6888888
Q ss_pred CEECCCcEecCeEECCCCEECCCcEE
Q 012817 421 AQLQERVALKDCQVGQGYVVSAGCEY 446 (456)
Q Consensus 421 ~~I~~~~~i~~~~i~~~~~v~~~~~~ 446 (456)
+.|++++++.+.+-....+++..+.+
T Consensus 117 ~~Igags~V~~dv~~~~~v~G~pA~~ 142 (146)
T PRK10191 117 VTVGAGSVVLDSVPDNALVVGEKARV 142 (146)
T ss_pred CEECCCCEECCccCCCcEEEccCcEE
Confidence 88888888776655555555555543
No 182
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.06 E-value=8.6e-10 Score=109.84 Aligned_cols=83 Identities=17% Similarity=0.418 Sum_probs=72.8
Q ss_pred CCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEe
Q 012817 350 PSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL 429 (456)
Q Consensus 350 ~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i 429 (456)
+.+.|++++.| ++|.||++|.|+ +.|.+|+|+++|.|+++|.|.+|+|++++.|++++.+.+|+|+++++|++++.+
T Consensus 277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~ 353 (369)
T TIGR02092 277 PPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKI 353 (369)
T ss_pred CCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEe
Confidence 56666777777 788899999997 468899999999999999999999999999999999999999999999998888
Q ss_pred cCeEEC
Q 012817 430 KDCQVG 435 (456)
Q Consensus 430 ~~~~i~ 435 (456)
.+..+.
T Consensus 354 ~~~~~~ 359 (369)
T TIGR02092 354 AGTSEQ 359 (369)
T ss_pred CCCCCc
Confidence 665433
No 183
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=6.8e-10 Score=106.58 Aligned_cols=95 Identities=24% Similarity=0.378 Sum_probs=82.5
Q ss_pred eCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCc
Q 012817 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 427 (456)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~ 427 (456)
..++..|.+.....+++.+.. .+.+.+|.|++||.|.. .|.||+|+.+++|+++|.|++|+|.++|.||.||
T Consensus 270 yd~~w~IyT~~~~~pPak~~~------~s~v~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~ 341 (393)
T COG0448 270 YDRNWPIYTKNKNLPPAKFVN------DSEVSNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGA 341 (393)
T ss_pred cCCCCceeecCCCCCCceEec------CceEeeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCC
Confidence 456666766666666666555 45578899999999965 8999999999999999999999999999999999
Q ss_pred EecCeEECCCCEECCCcEEcCCe
Q 012817 428 ALKDCQVGQGYVVSAGCEYKGES 450 (456)
Q Consensus 428 ~i~~~~i~~~~~v~~~~~~~~~~ 450 (456)
.|..++|.++++|++|+.+.+..
T Consensus 342 ~l~~aIIDk~v~I~~g~~i~~~~ 364 (393)
T COG0448 342 VLRRAIIDKNVVIGEGVVIGGDK 364 (393)
T ss_pred EEEEEEeCCCcEeCCCcEEcCCc
Confidence 99999999999999999998873
No 184
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.04 E-value=1.4e-09 Score=98.22 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=72.7
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCC-cchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~g-kpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (456)
++.+||||||.|+|| +.+|+|+|++| +|||+|+++.+... +++++|++++. ... ....
T Consensus 8 ~i~~vILAgG~s~Rm------G~~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~~----~~~----------~~~~ 66 (196)
T PRK00560 8 NIPCVILAGGKSSRM------GENKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDK----KFE----------FNAP 66 (196)
T ss_pred CceEEEECCcccccC------CCCceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECch----hcc----------cCCc
Confidence 578999999999999 47999999999 99999999999876 88999888741 111 0122
Q ss_pred EEEc--cCCcChHHHHHHHHhcCCCCcEEEEcCCc--ccCCChhHH
Q 012817 81 VATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAV 122 (456)
Q Consensus 81 ~~~~--~~~~gt~~al~~~~~~l~~~~~lv~~~D~--i~~~~l~~~ 122 (456)
++.. ....|+..++..++.....+.+++++||+ +....++.+
T Consensus 67 ~v~d~~~~~~gpl~gi~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 67 FLLEKESDLFSPLFGIINAFLTLQTPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred EEecCCCCCCCcHHHHHHHHHhcCCCeEEEEecCcCcCCHHHHHHH
Confidence 2221 22357777777776655567899999994 334445555
No 185
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.04 E-value=2.3e-09 Score=96.19 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=32.8
Q ss_pred CCCceeCCCCEe--CCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe
Q 012817 343 AQNNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV 396 (456)
Q Consensus 343 ~~~~~i~~~~~i--~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~ 396 (456)
+++++|.|.+.+ |.++.||+++.|+.+|.|.+.. +..||++|.|+++|.|.
T Consensus 59 g~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~---~I~IGd~v~Ig~~v~I~ 111 (203)
T PRK09527 59 GENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDY---TVTIGDNVLIAPNVTLS 111 (203)
T ss_pred CCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCC---CEEECCCCEECCCCEEE
Confidence 456667776665 3455555555555555553332 35899999999999886
No 186
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.04 E-value=1.9e-09 Score=100.27 Aligned_cols=117 Identities=23% Similarity=0.296 Sum_probs=80.8
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 83 (456)
|||||||.|+|| . +|+|++++|+|||+|+++.+..++ +++++|+++.....+.+..++.. .++.++.
T Consensus 2 aiIlA~G~S~R~----~---~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-----~~v~~v~ 69 (233)
T cd02518 2 AIIQARMGSTRL----P---GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-----LGVKVFR 69 (233)
T ss_pred EEEeeCCCCCCC----C---CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-----cCCeEEE
Confidence 799999999999 2 599999999999999999999987 89999998754211234443322 1234433
Q ss_pred ccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCceEE
Q 012817 84 VPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT 134 (456)
Q Consensus 84 ~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t 134 (456)
-+. .+.......+++....+.++++.|| ++....++.+++.+...+.+++
T Consensus 70 ~~~-~~~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 70 GSE-EDVLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred CCc-hhHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 222 2222222333333344679999999 6777789999998877666654
No 187
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.04 E-value=1.2e-09 Score=108.43 Aligned_cols=83 Identities=19% Similarity=0.347 Sum_probs=74.5
Q ss_pred EECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCc
Q 012817 365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC 444 (456)
Q Consensus 365 ~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~ 444 (456)
.+.+.+.|++.+.|.+|+||++|.|+++ .|.+|+|+++|.||++|.|.+|+|++++.|++++.|.+|+||+++.|++++
T Consensus 279 ~~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~ 357 (361)
T TIGR02091 279 FLPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGV 357 (361)
T ss_pred CCCCceEecCCCEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCC
Confidence 3445566677777778899999999987 889999999999999999999999999999999999999999999999999
Q ss_pred EEcC
Q 012817 445 EYKG 448 (456)
Q Consensus 445 ~~~~ 448 (456)
.+.+
T Consensus 358 ~i~~ 361 (361)
T TIGR02091 358 VIGN 361 (361)
T ss_pred EeCC
Confidence 8753
No 188
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.02 E-value=1.5e-09 Score=98.38 Aligned_cols=67 Identities=27% Similarity=0.368 Sum_probs=40.9
Q ss_pred eEECCCCEECCCcEEeCe-EECCCCEECCCcEEcC---------eEECCCCEECCCc-EecCeEECCCCEECCCcEEc
Q 012817 381 SVIGRHCRIGSNVKVVNS-VVMNHVTIGDGCSIQG---------SVICSNAQLQERV-ALKDCQVGQGYVVSAGCEYK 447 (456)
Q Consensus 381 s~Ig~~~~ig~~~~i~~s-~i~~~~~ig~~~~i~~---------~ii~~~~~I~~~~-~i~~~~i~~~~~v~~~~~~~ 447 (456)
+.++++++|.-++.++.| +|++||.||.++.|.+ ++|+++|.||+++ .+.++.+|+|++|++|+.+.
T Consensus 139 A~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~ 216 (271)
T COG2171 139 AGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFIT 216 (271)
T ss_pred cccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEe
Confidence 466666666666666533 3666666666666643 5577777777776 44566666666666665543
No 189
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.02 E-value=1.7e-09 Score=107.20 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=78.5
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~ 81 (456)
++.+||||||.|+|| +.+|+|+|++|+|||+|+++.+... +.+++|+++... ...+ .. .++.+
T Consensus 174 ~i~~iILAGG~SsRm------G~~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~----~~~~-~~-----~~v~~ 236 (369)
T PRK14490 174 PLSGLVLAGGRSSRM------GSDKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQ----AEQY-RS-----FGIPL 236 (369)
T ss_pred CceEEEEcCCccccC------CCCcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCch----hhHH-hh-----cCCcE
Confidence 467999999999999 3699999999999999999999764 788888776431 1111 11 12344
Q ss_pred EEccC-CcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHH
Q 012817 82 ATVPE-DVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAA 125 (456)
Q Consensus 82 ~~~~~-~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~ 125 (456)
+.... ..|...+++.++++...+.+++++|| ++....+..+++.
T Consensus 237 i~d~~~~~Gpl~gi~~al~~~~~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 237 ITDSYLDIGPLGGLLSAQRHHPDAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred EeCCCCCCCcHHHHHHHHHhCCCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 43332 36888888888777666789999999 5555667777765
No 190
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.01 E-value=4.6e-09 Score=97.26 Aligned_cols=49 Identities=33% Similarity=0.384 Sum_probs=26.8
Q ss_pred CeEECCCCEECCCcEEc-----C----eEECCCCEECCCcEecCeEECCCCEECCCcEE
Q 012817 397 NSVVMNHVTIGDGCSIQ-----G----SVICSNAQLQERVALKDCQVGQGYVVSAGCEY 446 (456)
Q Consensus 397 ~s~i~~~~~ig~~~~i~-----~----~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~ 446 (456)
+|+|+++|.|+.++.|. + +.||++|.||.++.| +..||++++|++|+.+
T Consensus 199 dvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVV 256 (319)
T TIGR03535 199 GVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL-GISLGDDCVVEAGLYV 256 (319)
T ss_pred CCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE-CeEECCCCEECCCCEE
Confidence 44455555555555522 2 556666666666665 5555555555555543
No 191
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.00 E-value=2.1e-09 Score=95.48 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=48.4
Q ss_pred EECCCCEECCCcEEeCeE-EC-CCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcCCe
Q 012817 382 VIGRHCRIGSNVKVVNSV-VM-NHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGES 450 (456)
Q Consensus 382 ~Ig~~~~ig~~~~i~~s~-i~-~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~~ 450 (456)
+||++|.|-++++|.... -+ .-+.||+++.+= .+.|.-+|+||.++++. ++.++.++.|+.-+.+.|-+
T Consensus 83 ~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s 155 (260)
T COG1043 83 IIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS 155 (260)
T ss_pred EECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence 777777777777777333 33 335678888874 88888888888888885 56666666666666666543
No 192
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.00 E-value=3.6e-09 Score=93.06 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=28.6
Q ss_pred CCceeCCCCEe--CCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe
Q 012817 344 QNNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV 396 (456)
Q Consensus 344 ~~~~i~~~~~i--~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~ 396 (456)
.+..+.+++.+ +.++.||+++.|+.+|.|.+.+ +..||++|.|+++|.|.
T Consensus 47 ~~~~i~~~~~~~~~~~i~IG~~v~I~~~~~i~~~~---~i~IG~~v~Ig~~~~I~ 98 (169)
T cd03357 47 ENVYIEPPFHCDYGYNIHIGDNFYANFNCTILDVA---PVTIGDNVLIGPNVQIY 98 (169)
T ss_pred CCCEEcCCEEEEeCCcCEECCCceEcCCEEEeccC---cEEECCCCEECCCCEEE
Confidence 44555555433 3344555555555554443322 34888888888888884
No 193
>PLN02694 serine O-acetyltransferase
Probab=98.99 E-value=2.4e-09 Score=99.73 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=65.9
Q ss_pred CceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEEC---CCcEEeCeEECCCCEECCCcEE-cCeEEC
Q 012817 345 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIG---SNVKVVNSVVMNHVTIGDGCSI-QGSVIC 418 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig---~~~~i~~s~i~~~~~ig~~~~i-~~~ii~ 418 (456)
.+.|+|.+.||.++.|.. +++||++|.||++|.| .++|++| ..+..++++|+++|.||.++.| +++.||
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I-----~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IG 234 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI-----LHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIG 234 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEE-----eecceeCCcccccCCCccEECCCeEECCeeEECCCCEEC
Confidence 456778888888877765 6777777777777744 4444443 3344567899999999999999 699999
Q ss_pred CCCEECCCcEecCeEECCCCEE
Q 012817 419 SNAQLQERVALKDCQVGQGYVV 440 (456)
Q Consensus 419 ~~~~I~~~~~i~~~~i~~~~~v 440 (456)
+++.||++++|... |.+++++
T Consensus 235 d~a~IGAgSVV~kd-VP~~~~v 255 (294)
T PLN02694 235 EGAKIGAGSVVLID-VPPRTTA 255 (294)
T ss_pred CCCEECCCCEECCc-CCCCcEE
Confidence 99999999988764 3444443
No 194
>PRK10502 putative acyl transferase; Provisional
Probab=98.99 E-value=3.4e-09 Score=94.30 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=29.5
Q ss_pred CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe---eeEECCCCEECCCcEEe
Q 012817 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV 396 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~---~s~Ig~~~~ig~~~~i~ 396 (456)
+++.|++++.|... .+..||++|.|++++.|. ...||++|.|++++.|.
T Consensus 56 ~~~~I~~~a~i~~~----~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~ 107 (182)
T PRK10502 56 KGVVIRPSVRITYP----WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLC 107 (182)
T ss_pred CCcEEcCCEEEecC----CeEEECCCeEECCCceecccCceEECCCcEECCCeEEE
Confidence 44455555544321 234555555566665554 36888888888888874
No 195
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.99 E-value=2.7e-09 Score=92.95 Aligned_cols=89 Identities=22% Similarity=0.313 Sum_probs=46.0
Q ss_pred CceeCCCCEeCCCcEECCC--CEECCCCEECCCCeEeeeEECCCCEECCCc---EEeCeEECCCCEECCCcEEc-CeEEC
Q 012817 345 NNIIHPSAELGSKTTVGPH--CMLGEGSQMGDKCSVKRSVIGRHCRIGSNV---KVVNSVVMNHVTIGDGCSIQ-GSVIC 418 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~~--~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~---~i~~s~i~~~~~ig~~~~i~-~~ii~ 418 (456)
...|++++.|++++.|+.+ +.|+++|.||++| .|+++|.|+... ....++|+++|.||.++.|. +++||
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~-----~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG 135 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDV-----TIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVG 135 (162)
T ss_pred CeEeCCCCEECCCeEECCCCeEEECCCCEECCCC-----EEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEEC
Confidence 3445555555555544332 3444444444443 333344443221 01235677777777777774 57777
Q ss_pred CCCEECCCcEecCeEECCCCE
Q 012817 419 SNAQLQERVALKDCQVGQGYV 439 (456)
Q Consensus 419 ~~~~I~~~~~i~~~~i~~~~~ 439 (456)
+++.|+++++|..- |.++++
T Consensus 136 ~~~~Iga~s~V~~d-vp~~~~ 155 (162)
T TIGR01172 136 ENAKIGANSVVLKD-VPPGAT 155 (162)
T ss_pred CCCEECCCCEECCC-CCCCCE
Confidence 77777777666542 344443
No 196
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.99 E-value=3.2e-09 Score=103.37 Aligned_cols=108 Identities=20% Similarity=0.282 Sum_probs=79.0
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~ 82 (456)
+.+||||||.|+|| +.+|+|+|+.|+||++|+++.+... +.+++|+++.. ...... .. .+.++
T Consensus 161 i~~IILAGGkSsRM------G~dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~----~~~~~~----~~--~v~~I 223 (346)
T PRK14500 161 LYGLVLTGGKSRRM------GKDKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPS----QWQGTP----LE--NLPTL 223 (346)
T ss_pred ceEEEEeccccccC------CCCcccceeCCccHHHHHHHHHHhh-CCEEEEEeCch----Hhhhcc----cc--CCeEE
Confidence 56899999999999 4699999999999999999998754 78998887632 111100 01 12333
Q ss_pred Ec-cCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHH
Q 012817 83 TV-PEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHR 127 (456)
Q Consensus 83 ~~-~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~ 127 (456)
.. ....|...+|+.+++....+.+++++|| ++....+..+++.+.
T Consensus 224 ~D~~~~~GPlagI~aaL~~~~~~~~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 224 PDRGESVGPISGILTALQSYPGVNWLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred eCCCCCCChHHHHHHHHHhCCCCCEEEEECCcCCCCHHHHHHHHHhhh
Confidence 22 2237999999999887766688999999 455556777777653
No 197
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.99 E-value=7.8e-09 Score=96.45 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=53.5
Q ss_pred CCceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCC---cEEeCeEECCCCEECCCcEEc-CeEE
Q 012817 344 QNNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSN---VKVVNSVVMNHVTIGDGCSIQ-GSVI 417 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~---~~i~~s~i~~~~~ig~~~~i~-~~ii 417 (456)
..+.|+|.+.||.++.|+. +++||++|.||++| .|+++|+||.. +...+.+|+++|.||.+|.|. ++.|
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv-----~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~I 214 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDV-----SILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEV 214 (273)
T ss_pred eeeEecCcceECCCeEEcCCCCeEECCCCEECCCC-----EEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEE
Confidence 3555566666665555543 33444444444444 34444444431 112246788888888888884 7888
Q ss_pred CCCCEECCCcEecCeEECCCCEE
Q 012817 418 CSNAQLQERVALKDCQVGQGYVV 440 (456)
Q Consensus 418 ~~~~~I~~~~~i~~~~i~~~~~v 440 (456)
|++|.||++++|.+. |.+++++
T Consensus 215 G~~a~IGAgSvV~~d-Vp~~~~v 236 (273)
T PRK11132 215 GRGAKIGAGSVVLQP-VPPHTTA 236 (273)
T ss_pred CCCCEECCCCEECcc-cCCCcEE
Confidence 888888888877653 4444444
No 198
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.1e-09 Score=98.07 Aligned_cols=92 Identities=14% Similarity=0.279 Sum_probs=73.3
Q ss_pred eCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC--
Q 012817 354 LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-- 431 (456)
Q Consensus 354 i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~-- 431 (456)
|-.++.|++.+.+.+.+.||+|+ .||.+++||+++++.+|+|.+++.|.+|+.+-+||||+++.||..+.+++
T Consensus 285 IigdVyIhPsakvhptAkiGPNV-----SIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~p 359 (407)
T KOG1460|consen 285 IIGDVYIHPSAKVHPTAKIGPNV-----SIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIP 359 (407)
T ss_pred EEeeeEEcCcceeCCccccCCCc-----eecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccc
Confidence 55556666666666666666665 89999999999999999999999999999999999999999999888743
Q ss_pred ------------eEECCCCEECCCcEEcCCe
Q 012817 432 ------------CQVGQGYVVSAGCEYKGES 450 (456)
Q Consensus 432 ------------~~i~~~~~v~~~~~~~~~~ 450 (456)
++.|+.+.|+.-+.+.++.
T Consensus 360 v~~s~~~~~~a~Tilga~v~v~dev~v~~s~ 390 (407)
T KOG1460|consen 360 VEPSPNLPFAALTILGADVSVEDEVIVLNSI 390 (407)
T ss_pred cccCCCCCcceeEEecccceecceeEEeeee
Confidence 4556666666666555543
No 199
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.98 E-value=5.3e-09 Score=96.85 Aligned_cols=89 Identities=25% Similarity=0.395 Sum_probs=56.1
Q ss_pred CCCEeCCCcEECCCCEECCCC-EECCCCeEeeeEECCCCEECCCcEEe-CeEECC----C----CEECCCcEEc-CeEEC
Q 012817 350 PSAELGSKTTVGPHCMLGEGS-QMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMN----H----VTIGDGCSIQ-GSVIC 418 (456)
Q Consensus 350 ~~~~i~~~~~i~~~~~i~~~~-~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~----~----~~ig~~~~i~-~~ii~ 418 (456)
-+|.|++++.|.++++|..++ +||+. .| ++.|+++|.||++|.|. ++.|+. + +.||++|+|+ +|.|
T Consensus 164 lGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I- 240 (319)
T TIGR03535 164 LGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL- 240 (319)
T ss_pred eccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE-
Confidence 344455555555555555555 45553 33 57788888888888887 555333 6 7777777776 6666
Q ss_pred CCCEECCCcEecCeEECCCCEECCCcEEc
Q 012817 419 SNAQLQERVALKDCQVGQGYVVSAGCEYK 447 (456)
Q Consensus 419 ~~~~I~~~~~i~~~~i~~~~~v~~~~~~~ 447 (456)
++.|| ++|+||.|++|.+++.+.
T Consensus 241 -GI~IG-----d~~VVGAGaVVtkgT~v~ 263 (319)
T TIGR03535 241 -GISLG-----DDCVVEAGLYVTAGTKVT 263 (319)
T ss_pred -CeEEC-----CCCEECCCCEEeCCeEEE
Confidence 56666 456666666666666543
No 200
>PRK10502 putative acyl transferase; Provisional
Probab=98.97 E-value=5.1e-09 Score=93.14 Aligned_cols=67 Identities=24% Similarity=0.256 Sum_probs=38.2
Q ss_pred eEECCCCEECCCcEEe---CeEECCCCEECCCcEEc----------------CeEECCCCEECCCcEe-cCeEECCCCEE
Q 012817 381 SVIGRHCRIGSNVKVV---NSVVMNHVTIGDGCSIQ----------------GSVICSNAQLQERVAL-KDCQVGQGYVV 440 (456)
Q Consensus 381 s~Ig~~~~ig~~~~i~---~s~i~~~~~ig~~~~i~----------------~~ii~~~~~I~~~~~i-~~~~i~~~~~v 440 (456)
..||++|.|++++.|. ...|+++|.|++++.|. ..+|+++|.||++++| .++.||++++|
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vI 151 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVV 151 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEE
Confidence 3555555555555554 34555666665555552 2456666666666655 36666666666
Q ss_pred CCCcEEc
Q 012817 441 SAGCEYK 447 (456)
Q Consensus 441 ~~~~~~~ 447 (456)
++++.+.
T Consensus 152 ga~svV~ 158 (182)
T PRK10502 152 GARSSVF 158 (182)
T ss_pred CCCCEEe
Confidence 6666543
No 201
>PLN02357 serine acetyltransferase
Probab=98.93 E-value=7.2e-09 Score=99.32 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=67.9
Q ss_pred CceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCC---cEEeCeEECCCCEECCCcEE-cCeEEC
Q 012817 345 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSN---VKVVNSVVMNHVTIGDGCSI-QGSVIC 418 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~---~~i~~s~i~~~~~ig~~~~i-~~~ii~ 418 (456)
.+.|+|.+.||.++.|.. +++||++|+||++| .|+++|+||.. ...++++|+++|.||.++.| +++.||
T Consensus 226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV-----~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IG 300 (360)
T PLN02357 226 AVDIHPGAKIGQGILLDHATGVVIGETAVVGNNV-----SILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIG 300 (360)
T ss_pred ceeeCCCCEECCCeEECCCCceEECCCCEECCCC-----EEeCCceecCccccCCccCceeCCCeEECCceEEECCeEEC
Confidence 456777777777777764 56677777777766 34444444432 12346889999999999888 589999
Q ss_pred CCCEECCCcEecCeEECCCCEECCCcEEcC
Q 012817 419 SNAQLQERVALKDCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 419 ~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~ 448 (456)
+++.||++++|.+.+-...+++|.-+.+-+
T Consensus 301 dga~IGAgSVV~~dVP~~~~v~G~PArvv~ 330 (360)
T PLN02357 301 EGAKIGAGSVVLKDVPPRTTAVGNPARLIG 330 (360)
T ss_pred CCCEECCCCEECcccCCCcEEECCCeEEEc
Confidence 999999999887654444444555555433
No 202
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.93 E-value=7.1e-09 Score=96.70 Aligned_cols=90 Identities=19% Similarity=0.348 Sum_probs=50.2
Q ss_pred CCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCC---cEEcCeEECCCCEECCC
Q 012817 350 PSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDG---CSIQGSVICSNAQLQER 426 (456)
Q Consensus 350 ~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~---~~i~~~ii~~~~~I~~~ 426 (456)
..+.+..++.|++++.||+++.|+.++.| +||++|.||++|.| +.+|++|.. +....++||++|.||+|
T Consensus 134 ~~~~~~~gidI~~~a~IG~g~~I~h~~gi---vIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGag 205 (273)
T PRK11132 134 NQISVAFQVDIHPAAKIGRGIMLDHATGI---VIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAG 205 (273)
T ss_pred hcceeeeeeEecCcceECCCeEEcCCCCe---EECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCC
Confidence 34444556666666666666666655432 66666666666666 344444421 11224556666666666
Q ss_pred cEe-cCeEECCCCEECCCcEEc
Q 012817 427 VAL-KDCQVGQGYVVSAGCEYK 447 (456)
Q Consensus 427 ~~i-~~~~i~~~~~v~~~~~~~ 447 (456)
+.| .++.||++++|++|+.+.
T Consensus 206 a~Ilggv~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 206 AKILGNIEVGRGAKIGAGSVVL 227 (273)
T ss_pred CEEcCCCEECCCCEECCCCEEC
Confidence 644 355666666666665544
No 203
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.92 E-value=4.2e-09 Score=106.57 Aligned_cols=73 Identities=21% Similarity=0.380 Sum_probs=67.3
Q ss_pred CeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcCC
Q 012817 376 CSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE 449 (456)
Q Consensus 376 ~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~ 449 (456)
+.+.+|+||++|.| ++|.|.+|+|+++|.||++|.|.+|+|+++|.|++++.|.+|+|++++.|++++.+.+.
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~ 395 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGED 395 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCC
Confidence 35668999999999 78999999999999999999999999999999999999999999999999999888754
No 204
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.92 E-value=1.9e-08 Score=90.30 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=30.7
Q ss_pred ceeCCCCEeCCCcEE----CCCCEECCCCEECCCCeEe---eeEECCCCEECCCcEEe
Q 012817 346 NIIHPSAELGSKTTV----GPHCMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV 396 (456)
Q Consensus 346 ~~i~~~~~i~~~~~i----~~~~~i~~~~~I~~~~~i~---~s~Ig~~~~ig~~~~i~ 396 (456)
..+++++.++.++++ .+...||++|.|++++.|. +..||++|.|++++.|.
T Consensus 44 I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~ 101 (192)
T PRK09677 44 INFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFIT 101 (192)
T ss_pred EEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEE
Confidence 334444555544444 2345566666666666554 46788888888887776
No 205
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.91 E-value=6.7e-09 Score=104.68 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=66.8
Q ss_pred eEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcC
Q 012817 377 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 377 ~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~ 448 (456)
.+.++.||++|.|+ ++.|.+|+|+++|.||++|.|.+|+|+++|.|+++++|.+|+|++++.|++++.+.+
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 45678999999998 999999999999999999999999999999999999999999999999999999877
No 206
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.91 E-value=1.7e-08 Score=80.78 Aligned_cols=79 Identities=25% Similarity=0.471 Sum_probs=42.9
Q ss_pred eCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCCcE---EeCeEECCCCEECCCcEEc-CeEECCCC
Q 012817 348 IHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK---VVNSVVMNHVTIGDGCSIQ-GSVICSNA 421 (456)
Q Consensus 348 i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~---i~~s~i~~~~~ig~~~~i~-~~ii~~~~ 421 (456)
|++++.|++++.++. .+.|++++.|++++ .|+.++.|+.++. +.+++|++++.|+.++.+. ++.|++++
T Consensus 5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~-----~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~ 79 (101)
T cd03354 5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNC-----TIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNV 79 (101)
T ss_pred eCCCCEECCCEEECCCCeEEECCCCEECCCC-----EEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCC
Confidence 444444444444433 33444444444444 4455555555553 4466666666666666665 46666666
Q ss_pred EECCCcEecC
Q 012817 422 QLQERVALKD 431 (456)
Q Consensus 422 ~I~~~~~i~~ 431 (456)
.|++++.|..
T Consensus 80 ~i~~~~~i~~ 89 (101)
T cd03354 80 KIGANAVVTK 89 (101)
T ss_pred EECCCCEECc
Confidence 6666655543
No 207
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.90 E-value=8.2e-09 Score=102.19 Aligned_cols=87 Identities=18% Similarity=0.358 Sum_probs=57.7
Q ss_pred CCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcE-----EcCeEECCCCEECCCc-Ee
Q 012817 356 SKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCS-----IQGSVICSNAQLQERV-AL 429 (456)
Q Consensus 356 ~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~-----i~~~ii~~~~~I~~~~-~i 429 (456)
+++.+.+++.|+++|.| .++ +|+.+|.||++|.|++|+|+++|+||++|. |.+|+|+++++|+.++ .+
T Consensus 247 ~~~~i~~~~~i~~~~~i-~~~-----~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~ 320 (353)
T TIGR01208 247 DESKIRGRVVVGEGAKI-VNS-----VIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARI 320 (353)
T ss_pred CCCEEcCCEEECCCCEE-eCC-----EEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCccee
Confidence 34445555555555555 344 444445555555555555555555555555 5689999999999884 88
Q ss_pred cCeEECCCCEECCCcEEcC
Q 012817 430 KDCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 430 ~~~~i~~~~~v~~~~~~~~ 448 (456)
.+++|++++.|++++.+.+
T Consensus 321 ~~~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 321 VDSVIGKKVRIKGNRRRPG 339 (353)
T ss_pred ecCEEcCCCEECCCccccc
Confidence 8999999999999988764
No 208
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.90 E-value=7.6e-09 Score=105.11 Aligned_cols=98 Identities=19% Similarity=0.319 Sum_probs=78.1
Q ss_pred ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECC----------------C---CEECCCcEEeCeEECCCCEE
Q 012817 346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGR----------------H---CRIGSNVKVVNSVVMNHVTI 406 (456)
Q Consensus 346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~----------------~---~~ig~~~~i~~s~i~~~~~i 406 (456)
++|++++.|+ ++.| .+++|+++|.|+++|.|.+|+|.. + +.||++|.|.+++|+++|.|
T Consensus 316 s~I~~~~~I~-~~~I-~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~I 393 (436)
T PLN02241 316 SIISHGCFLR-ECKI-EHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARI 393 (436)
T ss_pred eEEcCCcEEc-CeEE-EeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEE
Confidence 6788888888 8888 478999999999999999987744 3 38999999999999999999
Q ss_pred CCCcEEcCe-EECCCCEECCCcEec-C-eEECCCCEECCCcE
Q 012817 407 GDGCSIQGS-VICSNAQLQERVALK-D-CQVGQGYVVSAGCE 445 (456)
Q Consensus 407 g~~~~i~~~-ii~~~~~I~~~~~i~-~-~~i~~~~~v~~~~~ 445 (456)
|+++.+.++ -+.+..++|+++++. + ++||+++.+.+|+.
T Consensus 394 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 435 (436)
T PLN02241 394 GKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTV 435 (436)
T ss_pred CCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCCC
Confidence 999999743 355555556555554 3 68888888887764
No 209
>PLN02694 serine O-acetyltransferase
Probab=98.88 E-value=7.4e-09 Score=96.54 Aligned_cols=65 Identities=23% Similarity=0.442 Sum_probs=31.1
Q ss_pred eEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEe-cCeEECCCCEECCCcEEc
Q 012817 381 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYK 447 (456)
Q Consensus 381 s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~ 447 (456)
.+||++|.||++|.|.+++...++ +..+..++++|+++|.||++++| .+++||++++|++|+.+.
T Consensus 181 VVIGe~a~IGdnv~I~~~VtLGg~--g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~ 246 (294)
T PLN02694 181 VVIGETAVIGNNVSILHHVTLGGT--GKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVL 246 (294)
T ss_pred eEECCCcEECCCCEEeecceeCCc--ccccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEEC
Confidence 355555555555555422211111 22333345555555555555554 355555555555555544
No 210
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.88 E-value=8.4e-09 Score=104.53 Aligned_cols=74 Identities=18% Similarity=0.362 Sum_probs=65.0
Q ss_pred CCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECC-------------------CCEECCCcEecCeEEC
Q 012817 375 KCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS-------------------NAQLQERVALKDCQVG 435 (456)
Q Consensus 375 ~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~-------------------~~~I~~~~~i~~~~i~ 435 (456)
++.|+++.||++|.| +++.|++|+|+++|.||++|.|.+|+|+. ++.||++|.|.+|+|+
T Consensus 303 ~~~~~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 381 (429)
T PRK02862 303 DATITESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIID 381 (429)
T ss_pred ccEEEeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEEC
Confidence 567778899999999 88899999999999999999999999976 6889999999999999
Q ss_pred CCCEECCCcEEcCC
Q 012817 436 QGYVVSAGCEYKGE 449 (456)
Q Consensus 436 ~~~~v~~~~~~~~~ 449 (456)
+++.|++++.+.+.
T Consensus 382 ~~~~i~~~~~~~~~ 395 (429)
T PRK02862 382 KNARIGNNVRIVNK 395 (429)
T ss_pred CCcEECCCcEEecC
Confidence 99999999888643
No 211
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.88 E-value=1.8e-08 Score=88.23 Aligned_cols=130 Identities=12% Similarity=0.184 Sum_probs=86.0
Q ss_pred CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (456)
Q Consensus 1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i 79 (456)
|+.-|||+|.|.++|. ..|-+.+++|+|||.|+++.+.+++ +++|+|-+...+..+.-+.|..+.+..+ +.
T Consensus 2 ~~~iAiIpAR~gSKgI-------~~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~Il~~A~~ygak~~~~R-p~ 73 (228)
T COG1083 2 MKNIAIIPARGGSKGI-------KNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEAKKYGAKVFLKR-PK 73 (228)
T ss_pred cceEEEEeccCCCCcC-------CccchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHHHHHHHHHhCccccccC-Ch
Confidence 5667999999999998 5699999999999999999999998 6778777765443333333333322111 01
Q ss_pred EEEEccCCcChHHHHHHHHhcCC-C-CcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeec
Q 012817 80 EVATVPEDVGTAGALRAIAHHLT-A-KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSV 140 (456)
Q Consensus 80 ~~~~~~~~~gt~~al~~~~~~l~-~-~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~ 140 (456)
++. ++...+-+++..+.+... . +.++++.+- ++...+|++.++.+.+++.+..+.+++.
T Consensus 74 ~LA--~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~ 136 (228)
T COG1083 74 ELA--SDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVEC 136 (228)
T ss_pred hhc--cCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeec
Confidence 110 112233344555544433 3 347777776 6777899999999998887765555544
No 212
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.86 E-value=2.7e-08 Score=80.69 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=43.4
Q ss_pred eCCCCEeCCCcEECC--CCEECCCCEECCCCeEeee---EECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCC
Q 012817 348 IHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRS---VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNA 421 (456)
Q Consensus 348 i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s---~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~ 421 (456)
|++++.|++++.|.. ++.||++|.|+++|.|.++ .+..++.+.......+++|+++|.||+++.+. ++.|++++
T Consensus 4 Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~ 83 (109)
T cd04647 4 IGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGA 83 (109)
T ss_pred ECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCC
Confidence 444444444444444 5555555666555555532 23333333223333455666666666666663 66666666
Q ss_pred EECCCcEec
Q 012817 422 QLQERVALK 430 (456)
Q Consensus 422 ~I~~~~~i~ 430 (456)
.|++++.+.
T Consensus 84 ~i~~~~~v~ 92 (109)
T cd04647 84 VVGAGSVVT 92 (109)
T ss_pred EECCCCEEe
Confidence 666555555
No 213
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.86 E-value=2.2e-08 Score=80.94 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=9.5
Q ss_pred eEECCCCEECCCcEEe
Q 012817 381 SVIGRHCRIGSNVKVV 396 (456)
Q Consensus 381 s~Ig~~~~ig~~~~i~ 396 (456)
..||++|.|++++.|.
T Consensus 24 i~IG~~~~I~~~~~I~ 39 (107)
T cd05825 24 VTIGSDACISQGAYLC 39 (107)
T ss_pred eEECCCCEECCCeEee
Confidence 3566666666666553
No 214
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.86 E-value=2.2e-08 Score=75.69 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=16.6
Q ss_pred CCCCEECCCCeEee-eEECCCCEECCCcEEeCe
Q 012817 367 GEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNS 398 (456)
Q Consensus 367 ~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~s 398 (456)
+++|.|++++.|.+ +.||++|.|++++.|.++
T Consensus 4 g~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~ 36 (78)
T cd00208 4 GEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAA 36 (78)
T ss_pred CCCeEECCCCEEeCcEEECCCCEECCCCEEEec
Confidence 33333333333332 566666666666666643
No 215
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.85 E-value=4.5e-09 Score=97.52 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=68.3
Q ss_pred cCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-C
Q 012817 336 LSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G 414 (456)
Q Consensus 336 ~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~ 414 (456)
+.+.....+...++.++.|++++.||++|.|+++ ++|.+|+|-.+..++.++.|..|+++.+++||.+++|. +
T Consensus 261 i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~g------V~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~ 334 (371)
T KOG1322|consen 261 IVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDG------VRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKN 334 (371)
T ss_pred ccccEeeccccccCCccEECCCceECCCcEecCc------eEEEeeEEEccceechhHHHHhhhccccccccCceEEecc
Confidence 3333344455566777888888888877766554 55566788888999999999999999999999999886 8
Q ss_pred eEECCCCEECCCcEecC
Q 012817 415 SVICSNAQLQERVALKD 431 (456)
Q Consensus 415 ~ii~~~~~I~~~~~i~~ 431 (456)
|+||++|.|.+.-.+.+
T Consensus 335 a~lG~nV~V~d~~~vn~ 351 (371)
T KOG1322|consen 335 AVLGKNVIVADEDYVNE 351 (371)
T ss_pred cEeccceEEeccccccc
Confidence 88888888876666543
No 216
>PRK10191 putative acyl transferase; Provisional
Probab=98.84 E-value=2.7e-08 Score=84.53 Aligned_cols=82 Identities=18% Similarity=0.300 Sum_probs=43.6
Q ss_pred ceeCCCCEeCC--CcEECCCCEECCCCEECCCCeEe--------eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcC
Q 012817 346 NIIHPSAELGS--KTTVGPHCMLGEGSQMGDKCSVK--------RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG 414 (456)
Q Consensus 346 ~~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~i~--------~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~ 414 (456)
+.+++++.|++ ++.|++++.||++|.|+++++|+ .+.||++|.||+++.+. ++.|++++.||.++.+.+
T Consensus 48 a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~ 127 (146)
T PRK10191 48 ATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLD 127 (146)
T ss_pred CEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 33444444433 33444444444444444444443 14667777777766666 566666666666666665
Q ss_pred eEECCCCEECCCc
Q 012817 415 SVICSNAQLQERV 427 (456)
Q Consensus 415 ~ii~~~~~I~~~~ 427 (456)
.+......+|..+
T Consensus 128 dv~~~~~v~G~pA 140 (146)
T PRK10191 128 SVPDNALVVGEKA 140 (146)
T ss_pred ccCCCcEEEccCc
Confidence 5555445555444
No 217
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.84 E-value=2.8e-08 Score=79.48 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=52.2
Q ss_pred EECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcE---EcCeEECCCCEECCCcEec-CeEE
Q 012817 359 TVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCS---IQGSVICSNAQLQERVALK-DCQV 434 (456)
Q Consensus 359 ~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~---i~~~ii~~~~~I~~~~~i~-~~~i 434 (456)
.|++++.|++++.|+.+. .++|++++.||+++.| ++++.|+.++. ++.++|++++.|+.++.+. ++.|
T Consensus 4 ~i~~~~~ig~~~~i~~~~---~~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~I 75 (101)
T cd03354 4 DIHPGAKIGPGLFIDHGT---GIVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITI 75 (101)
T ss_pred EeCCCCEECCCEEECCCC---eEEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEE
Confidence 444444444444444321 2355666666655554 55666666664 5678888888888888775 4778
Q ss_pred CCCCEECCCcEEcCC
Q 012817 435 GQGYVVSAGCEYKGE 449 (456)
Q Consensus 435 ~~~~~v~~~~~~~~~ 449 (456)
++++.|++++.+...
T Consensus 76 g~~~~i~~~~~i~~~ 90 (101)
T cd03354 76 GDNVKIGANAVVTKD 90 (101)
T ss_pred CCCCEECCCCEECcc
Confidence 888888888777653
No 218
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.84 E-value=4.6e-08 Score=87.82 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=38.3
Q ss_pred eEECCCCEECCCcEEe---CeEECCCCEECCCcEEc----------------------------CeEECCCCEECCCcEe
Q 012817 381 SVIGRHCRIGSNVKVV---NSVVMNHVTIGDGCSIQ----------------------------GSVICSNAQLQERVAL 429 (456)
Q Consensus 381 s~Ig~~~~ig~~~~i~---~s~i~~~~~ig~~~~i~----------------------------~~ii~~~~~I~~~~~i 429 (456)
..||++|.|++++.|. +..|+++|.||.++.|. .++|+++|.||.++.|
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i 145 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTI 145 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEE
Confidence 3555555555555554 34555555555555553 1346666666666655
Q ss_pred c-CeEECCCCEECCCcEEcC
Q 012817 430 K-DCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 430 ~-~~~i~~~~~v~~~~~~~~ 448 (456)
. +++||++++|++++.+..
T Consensus 146 ~~g~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 146 LPGVSIGNGCIVGANSVVTK 165 (192)
T ss_pred cCCCEECCCCEECCCCEECc
Confidence 3 566666666666665543
No 219
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.84 E-value=3.8e-08 Score=85.77 Aligned_cols=34 Identities=9% Similarity=0.123 Sum_probs=17.0
Q ss_pred CeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817 414 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 447 (456)
Q Consensus 414 ~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~ 447 (456)
.++|+++|.|+++++|. +++||+++.|++++.+.
T Consensus 113 ~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~ 147 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVL 147 (162)
T ss_pred CCEECCCcEEcCCCEEECCcEECCCCEECCCCEEC
Confidence 34555555555555442 35555555555555443
No 220
>PLN02739 serine acetyltransferase
Probab=98.81 E-value=2.6e-08 Score=94.75 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=57.6
Q ss_pred CceeCCCCEeCCCcEEC--CCCEECCCCEECCCCeEeeeEECCCCEECCCcE---EeCeEECCCCEECCCcEE-cCeEEC
Q 012817 345 NNIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK---VVNSVVMNHVTIGDGCSI-QGSVIC 418 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~---i~~s~i~~~~~ig~~~~i-~~~ii~ 418 (456)
..-|+|.+.||.++.|. .+++||++|.||++| .|.++|+||.... -++.+|+++|.||.++.| +++.||
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv-----~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IG 279 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRV-----SILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIG 279 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCC-----EEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEEC
Confidence 55567777777777764 356666666666655 4445555543211 024678888888888888 478888
Q ss_pred CCCEECCCcEecCeEECCCCEE
Q 012817 419 SNAQLQERVALKDCQVGQGYVV 440 (456)
Q Consensus 419 ~~~~I~~~~~i~~~~i~~~~~v 440 (456)
+++.||+|++|..- |.+++++
T Consensus 280 d~aiIGAGSVV~kD-VP~~stv 300 (355)
T PLN02739 280 AGAMVAAGSLVLKD-VPSHSMV 300 (355)
T ss_pred CCCEECCCCEECCC-CCCCcEE
Confidence 88888888877643 3444443
No 221
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.80 E-value=4.8e-08 Score=79.20 Aligned_cols=86 Identities=23% Similarity=0.382 Sum_probs=48.6
Q ss_pred EECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCe---EECCCCEECCCcEEcCeEECCCCEECCCcEe-cCeEE
Q 012817 359 TVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS---VVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQV 434 (456)
Q Consensus 359 ~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s---~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i-~~~~i 434 (456)
.|++++.|++++.|... .++.||++|.|+++|.|.++ .++.++.+........++|++++.|++++.+ .++.|
T Consensus 3 ~Ig~~~~I~~~~~i~~~---~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~i 79 (109)
T cd04647 3 SIGDNVYIGPGCVISAG---GGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTI 79 (109)
T ss_pred EECCCcEECCCCEEecC---CceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEE
Confidence 34444444444444331 13577888888888887743 3333333333344456666666666666665 46666
Q ss_pred CCCCEECCCcEEc
Q 012817 435 GQGYVVSAGCEYK 447 (456)
Q Consensus 435 ~~~~~v~~~~~~~ 447 (456)
++++.+++++.+.
T Consensus 80 g~~~~i~~~~~v~ 92 (109)
T cd04647 80 GDGAVVGAGSVVT 92 (109)
T ss_pred CCCCEECCCCEEe
Confidence 6666666666655
No 222
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.78 E-value=6e-08 Score=87.13 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=13.3
Q ss_pred EECCCCEECCCcEEc-CeEECCCCEECCCcEec
Q 012817 399 VVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK 430 (456)
Q Consensus 399 ~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~ 430 (456)
+|+++|.||.++.|. ++.||+++.|+++++|.
T Consensus 133 ~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~ 165 (203)
T PRK09527 133 TIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT 165 (203)
T ss_pred EECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 334444444444443 34444444444444443
No 223
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.76 E-value=6.5e-08 Score=73.11 Aligned_cols=32 Identities=13% Similarity=0.329 Sum_probs=14.8
Q ss_pred eCCCCEeCCCcEECCCCEECCCCEECCCCeEe
Q 012817 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK 379 (456)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~ 379 (456)
+++++.|++++.+++++.||++|.|++++.|.
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~ 34 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIG 34 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEE
Confidence 34444444444444444445554444444443
No 224
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.75 E-value=1.2e-08 Score=96.17 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=48.7
Q ss_pred eEEEEecCCCCCCcCCCCCCCcccccccC---CcchHHHHHHHHHHC--------CCCEEEEEecCchhhHHHHhhhhhh
Q 012817 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------NIKDLIVVVEGADAALRVGGWISAA 72 (456)
Q Consensus 4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~---gkpli~~~l~~l~~~--------gi~~v~iv~~~~~~~~~i~~~~~~~ 72 (456)
-+|+||||.|+|| +...||+|+|++ |+|+|++.++++... ++..+++.+.+ ..+.+.+++.+.
T Consensus 2 a~viLaGG~GtRL----g~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~--t~~~t~~~l~~~ 75 (266)
T cd04180 2 AVVLLAGGLGTRL----GKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKY--THEKTQCYFEKI 75 (266)
T ss_pred EEEEECCCCcccc----CCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCch--hHHHHHHHHHHc
Confidence 3799999999999 788999999999 999999999999762 34444444432 234677777664
Q ss_pred c
Q 012817 73 Y 73 (456)
Q Consensus 73 ~ 73 (456)
.
T Consensus 76 ~ 76 (266)
T cd04180 76 N 76 (266)
T ss_pred C
Confidence 4
No 225
>PLN02739 serine acetyltransferase
Probab=98.74 E-value=4.3e-08 Score=93.26 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=15.9
Q ss_pred CCceeCCCCEeC--CCcEECCCCEECCCCEECCCCeE
Q 012817 344 QNNIIHPSAELG--SKTTVGPHCMLGEGSQMGDKCSV 378 (456)
Q Consensus 344 ~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~i 378 (456)
+.+.|+++..|. .++.||+++.||++|.|..+++|
T Consensus 210 p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTI 246 (355)
T PLN02739 210 PAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTL 246 (355)
T ss_pred CCccccCceEEecCCceEECCCCEECCCCEEcCCcee
Confidence 344444444442 24444444444444444444444
No 226
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.69 E-value=1.4e-07 Score=86.62 Aligned_cols=112 Identities=20% Similarity=0.329 Sum_probs=75.2
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 83 (456)
|||+|.+.++|+ ..|.|.+++|||||+|+++++.+++ +++|+|.+.+.+. .+.+.+. . ..+..
T Consensus 2 aiIpAR~gS~rl-------p~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i----~~~~~~~---g--~~v~~ 65 (217)
T PF02348_consen 2 AIIPARGGSKRL-------PGKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEEI----DDIAEEY---G--AKVIF 65 (217)
T ss_dssp EEEEE-SSSSSS-------TTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHHH----HHHHHHT---T--SEEEE
T ss_pred EEEecCCCCCCC-------CcchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHHH----HHHHHHc---C--CeeEE
Confidence 899999999999 6799999999999999999999986 7899999886543 3333222 1 23333
Q ss_pred ccCCc-ChHHHHHHHHhcC---CCCcEEEEcCC--cccCCChhHHHHHHHhcCce
Q 012817 84 VPEDV-GTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV 132 (456)
Q Consensus 84 ~~~~~-gt~~al~~~~~~l---~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~ 132 (456)
.++.. ........+.... ..+.++.+.|| ++....+..+++.+.+...+
T Consensus 66 ~~~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 66 RRGSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp --TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred cChhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 33332 2223333333322 22368888889 56666899999999988765
No 227
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.69 E-value=9.3e-08 Score=83.01 Aligned_cols=85 Identities=25% Similarity=0.314 Sum_probs=58.2
Q ss_pred CCceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCCcEE---eCeEECCCCEECCCcEE-cCeEE
Q 012817 344 QNNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV---VNSVVMNHVTIGDGCSI-QGSVI 417 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i---~~s~i~~~~~ig~~~~i-~~~ii 417 (456)
...-|+|.|.||++..|.. +++||+.+.||++| .|.++++||..-.= ++-.|+++|.||.++.| ++-.|
T Consensus 66 ~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv-----~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~I 140 (194)
T COG1045 66 FGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDV-----TIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEI 140 (194)
T ss_pred cceeeCCCCeECCceEEcCCceEEEcceeEECCCe-----EEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEE
Confidence 3566778888877777743 55677777666666 44555555442211 23478889999998888 58889
Q ss_pred CCCCEECCCcEecCeE
Q 012817 418 CSNAQLQERVALKDCQ 433 (456)
Q Consensus 418 ~~~~~I~~~~~i~~~~ 433 (456)
|+++.||+++++-+.+
T Consensus 141 Gd~akIGA~sVVlkdV 156 (194)
T COG1045 141 GDNAKIGAGSVVLKDV 156 (194)
T ss_pred CCCCEECCCceEccCC
Confidence 9999999998875543
No 228
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.68 E-value=6e-08 Score=88.11 Aligned_cols=50 Identities=14% Similarity=0.391 Sum_probs=30.5
Q ss_pred eEECCCCEECCCcEEeC---------eEECCCCEECCCc-EEcCeEECCCCEECCCcEec
Q 012817 381 SVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGC-SIQGSVICSNAQLQERVALK 430 (456)
Q Consensus 381 s~Ig~~~~ig~~~~i~~---------s~i~~~~~ig~~~-~i~~~ii~~~~~I~~~~~i~ 430 (456)
..||+||.||.++.|.. .+|++||.||.++ .+++++||++|+|++|++|.
T Consensus 157 a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~ 216 (271)
T COG2171 157 AQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFIT 216 (271)
T ss_pred EEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEe
Confidence 46777777777776643 3556666666665 33466666666666666553
No 229
>PLN02357 serine acetyltransferase
Probab=98.65 E-value=1.7e-07 Score=90.05 Aligned_cols=86 Identities=15% Similarity=0.220 Sum_probs=48.4
Q ss_pred cCCCceeCCCCEeCC--CcEECCCCEECCCCEECCCCeEe---------eeEECCCCEECCCcEEe-CeEECCCCEECCC
Q 012817 342 SAQNNIIHPSAELGS--KTTVGPHCMLGEGSQMGDKCSVK---------RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDG 409 (456)
Q Consensus 342 ~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~i~---------~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~ 409 (456)
+++.+.|++++.|.. ++.||+++.||++|.|..+++|+ +++||++|.||.++.|. +..|++++.||.+
T Consensus 229 I~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAg 308 (360)
T PLN02357 229 IHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAG 308 (360)
T ss_pred eCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECCC
Confidence 445555555555543 44555555555555555555553 25666666666666654 5556666666666
Q ss_pred cEEcCeEECCCCEECCCc
Q 012817 410 CSIQGSVICSNAQLQERV 427 (456)
Q Consensus 410 ~~i~~~ii~~~~~I~~~~ 427 (456)
+.|.+.+....+++|.-+
T Consensus 309 SVV~~dVP~~~~v~G~PA 326 (360)
T PLN02357 309 SVVLKDVPPRTTAVGNPA 326 (360)
T ss_pred CEECcccCCCcEEECCCe
Confidence 666554444444444444
No 230
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.63 E-value=4.5e-08 Score=79.38 Aligned_cols=97 Identities=13% Similarity=0.201 Sum_probs=70.0
Q ss_pred CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-------------eeEECCCCEECCCcEEeCeEECCCCEECCCc
Q 012817 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGC 410 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-------------~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~ 410 (456)
...++..++.|..+. .++.+|..|+++..+.|+ +..||+++.|+++|++..+.|+..|.+|.++
T Consensus 38 GKtIv~~g~iIRGDL---AnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gkna 114 (184)
T KOG3121|consen 38 GKTIVEEGVIIRGDL---ANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNA 114 (184)
T ss_pred CcEEEeeCcEEeccc---ccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccce
Confidence 455556666554322 345555555555555553 3589999999999999999999999999999
Q ss_pred EEc-CeEECCCCEECCCcEec-CeEECCCCEECCC
Q 012817 411 SIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAG 443 (456)
Q Consensus 411 ~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~ 443 (456)
.|+ +|++-+.|+|-+++++. .+++.+.+.++.+
T Consensus 115 viGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~ 149 (184)
T KOG3121|consen 115 VIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGN 149 (184)
T ss_pred eEcCceEhhhheeccCCcccCcccccCCceEEcCC
Confidence 997 88888888888777775 5666666666544
No 231
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.60 E-value=7.5e-07 Score=71.96 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=17.9
Q ss_pred CeEECCCCEECCCcEEc-CeEECCCCEECCCcEecC
Q 012817 397 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD 431 (456)
Q Consensus 397 ~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~ 431 (456)
...|+++|.||.++.|. ++.|++++.|++++.+.+
T Consensus 56 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~ 91 (107)
T cd05825 56 PIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVR 91 (107)
T ss_pred CEEECCCCEECCCCEECCCCEECCCCEECCCCEEeC
Confidence 34455555555555553 455555555555555443
No 232
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.60 E-value=4.1e-07 Score=80.68 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=52.0
Q ss_pred CCceeCCCCEeCCCcEECCCC--EECCCCEECCCCeEee-eEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEEC
Q 012817 344 QNNIIHPSAELGSKTTVGPHC--MLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVIC 418 (456)
Q Consensus 344 ~~~~i~~~~~i~~~~~i~~~~--~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~ 418 (456)
.+..|++.+.|+.++.|++.+ .||++|.|+++|.|.. ....+......+..+. ...|+++|.||.+|.|. ++.||
T Consensus 72 ~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG 151 (183)
T PRK10092 72 YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIG 151 (183)
T ss_pred CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEEC
Confidence 455555555555555554443 5666666666665531 1111111111223332 55567777777777775 67777
Q ss_pred CCCEECCCcEecCeEECCCCEE
Q 012817 419 SNAQLQERVALKDCQVGQGYVV 440 (456)
Q Consensus 419 ~~~~I~~~~~i~~~~i~~~~~v 440 (456)
++++|++++++... |.+++++
T Consensus 152 ~~~vIgagsvV~~d-i~~~~i~ 172 (183)
T PRK10092 152 DNVVVASGAVVTKD-VPDNVVV 172 (183)
T ss_pred CCCEECCCCEEccc-cCCCcEE
Confidence 77777777776543 3455444
No 233
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.59 E-value=4.4e-07 Score=79.79 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=20.1
Q ss_pred CeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCe
Q 012817 397 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDC 432 (456)
Q Consensus 397 ~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~ 432 (456)
+++|+++|.||.++.|. ++.|+++|.||+++++.+.
T Consensus 118 ~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~ 154 (169)
T cd03357 118 PITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD 154 (169)
T ss_pred CcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc
Confidence 44455555555555553 5556666666666655543
No 234
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.58 E-value=3e-07 Score=79.89 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=40.3
Q ss_pred cCCCceeCCCCEeC--CCcEECCCCEECCCCEECCCCeEee---------eEECCCCEECCCcEEe-CeEECCCCEECCC
Q 012817 342 SAQNNIIHPSAELG--SKTTVGPHCMLGEGSQMGDKCSVKR---------SVIGRHCRIGSNVKVV-NSVVMNHVTIGDG 409 (456)
Q Consensus 342 ~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~i~~---------s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~ 409 (456)
+++.+.|+++..|. .++.||+.+.||++|.|..+++|+. -.||+++.||.+++|= +-.|++++.||.+
T Consensus 70 Ihp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~ 149 (194)
T COG1045 70 IHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAG 149 (194)
T ss_pred eCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCC
Confidence 34455555555553 3345555555555555555555542 2555555555555543 3334444444444
Q ss_pred cEEcCeEECCCCEEC
Q 012817 410 CSIQGSVICSNAQLQ 424 (456)
Q Consensus 410 ~~i~~~ii~~~~~I~ 424 (456)
+++-..+-.+-+++|
T Consensus 150 sVVlkdVP~~~tvvG 164 (194)
T COG1045 150 SVVLKDVPPNATVVG 164 (194)
T ss_pred ceEccCCCCCceEec
Confidence 444444333333333
No 235
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.50 E-value=1.6e-07 Score=76.24 Aligned_cols=88 Identities=19% Similarity=0.319 Sum_probs=50.2
Q ss_pred CCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCe-------------EECCCCEECCCcEEcCeEECCCCEECCCcE
Q 012817 362 PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS-------------VVMNHVTIGDGCSIQGSVICSNAQLQERVA 428 (456)
Q Consensus 362 ~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s-------------~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~ 428 (456)
+.+++.++|.|..+ +-+..||+.|.+++++.|+.+ .|+++|.|+++|.+.-+.|+..+.+|.+++
T Consensus 38 GKtIv~~g~iIRGD--LAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gknav 115 (184)
T KOG3121|consen 38 GKTIVEEGVIIRGD--LANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAV 115 (184)
T ss_pred CcEEEeeCcEEecc--cccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecccee
Confidence 33444444444321 234577777777777777643 688999999999987555555555555544
Q ss_pred ec-CeEECCCCEECCCcEEcCCee
Q 012817 429 LK-DCQVGQGYVVSAGCEYKGESL 451 (456)
Q Consensus 429 i~-~~~i~~~~~v~~~~~~~~~~~ 451 (456)
|. +|++.+-+.|-+++++--..+
T Consensus 116 iGrrCVlkdCc~ild~tVlPpet~ 139 (184)
T KOG3121|consen 116 IGRRCVLKDCCRILDDTVLPPETL 139 (184)
T ss_pred EcCceEhhhheeccCCcccCcccc
Confidence 43 344444444444444333333
No 236
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.49 E-value=8.5e-06 Score=78.84 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=82.5
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccC---CcchHHHHHHHHHHCC-----------CCEEEEEecCchhhHHHHh
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELSN-----------IKDLIVVVEGADAALRVGG 67 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~---gkpli~~~l~~l~~~g-----------i~~v~iv~~~~~~~~~i~~ 67 (456)
++.+||||||.|+|| +...||+|+|++ |+|++++.++++...+ .-.++|.++.. ..+.+.+
T Consensus 15 ~va~viLaGG~GTRL----g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~-t~~~t~~ 89 (323)
T cd04193 15 KVAVLLLAGGQGTRL----GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEA-THEETRK 89 (323)
T ss_pred CEEEEEECCCccccc----CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChh-HhHHHHH
Confidence 467899999999999 888999999998 7999999999997742 12345666533 2346777
Q ss_pred hhhhhcc---CccceEEEEccC---------------------CcChHHHHHHHH-----hcC---CCCcEEEEcCCc-c
Q 012817 68 WISAAYV---DRLHVEVATVPE---------------------DVGTAGALRAIA-----HHL---TAKDVLVVSGDL-V 114 (456)
Q Consensus 68 ~~~~~~~---~~~~i~~~~~~~---------------------~~gt~~al~~~~-----~~l---~~~~~lv~~~D~-i 114 (456)
++.+... .+-.+.+..|+. +.|.++...... +.+ .-+++.+..-|. +
T Consensus 90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L 169 (323)
T cd04193 90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL 169 (323)
T ss_pred HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence 7765221 111233332211 235544333221 222 235677777785 3
Q ss_pred cCCChhHHHHHHHhcCceEEEEEee
Q 012817 115 SDVPPGAVTAAHRRHDAVVTAMICS 139 (456)
Q Consensus 115 ~~~~l~~~l~~~~~~~a~~t~~~~~ 139 (456)
....--.++-.+.+.++++..-+.+
T Consensus 170 ~~~~Dp~~lG~~~~~~~~~~~kvv~ 194 (323)
T cd04193 170 VKVADPVFIGFCISKGADVGAKVVR 194 (323)
T ss_pred ccccCHHHhHHHHHcCCceEEEEEE
Confidence 4333444777888888888765443
No 237
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.44 E-value=2e-07 Score=76.37 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=53.5
Q ss_pred ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe----eeEECCCCEECCCcEEeCe--------------EECCCCEEC
Q 012817 346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVNS--------------VVMNHVTIG 407 (456)
Q Consensus 346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i~~s--------------~i~~~~~ig 407 (456)
..|.|+|.+...+.|.+++.|+++|++.+.+++. +-+||+|+.|.+.+.|.|. +|+.+....
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFe 88 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFE 88 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEE
Confidence 4455666665555566666666666666666553 3567777777776666541 233333332
Q ss_pred CCcEEcCeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817 408 DGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 408 ~~~~i~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~ 448 (456)
-+|...-..+|++-+|+..+++. ++.+.+|+.||++..+.+
T Consensus 89 Vgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~ 130 (190)
T KOG4042|consen 89 VGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFS 130 (190)
T ss_pred eechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEec
Confidence 23333333344444444444443 444555555555544443
No 238
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.44 E-value=1.3e-06 Score=74.53 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=25.3
Q ss_pred CeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEE
Q 012817 397 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVV 440 (456)
Q Consensus 397 ~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v 440 (456)
+++|+++|.||.+|.|. ++.|++++.|+++++|... +.+++++
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~-v~~~~v~ 116 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD-VPPYAIV 116 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc-cCCCeEE
Confidence 55666666666666663 6666666666666665543 3444433
No 239
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.43 E-value=1.8e-06 Score=76.29 Aligned_cols=117 Identities=21% Similarity=0.291 Sum_probs=82.5
Q ss_pred CCceEEEEecC-CCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccc
Q 012817 1 MDFQVVVLAGG-TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLH 78 (456)
Q Consensus 1 m~~~aiIlagG-~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~ 78 (456)
|.|-++|+.+. .++|| ..|.|+|++++|||+++|+++.++. +++++|.++..+..+.+..++.+. +
T Consensus 1 ~~~I~~IiQARmgStRL-------pgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~-----G 68 (241)
T COG1861 1 MSMILVIIQARMGSTRL-------PGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH-----G 68 (241)
T ss_pred CCcEEEEeeecccCccC-------CcchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-----C
Confidence 55656666554 45577 6799999999999999999999886 688999988554334566655442 1
Q ss_pred eEEEEccCCcChH----HHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCceEE
Q 012817 79 VEVATVPEDVGTA----GALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT 134 (456)
Q Consensus 79 i~~~~~~~~~gt~----~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t 134 (456)
..+. +|+. +....+.+..+.+.++=+.|| ++.+.-++.+++.|.+.+++-+
T Consensus 69 ~~vf-----rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 69 FYVF-----RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred eeEe-----cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence 2222 3443 333345666666678889999 5666678889999999998743
No 240
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.31 E-value=5.7e-06 Score=70.53 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=16.9
Q ss_pred CeEECCCCEECCCcEe-cCeEECCCCEECCCcEEc
Q 012817 414 GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYK 447 (456)
Q Consensus 414 ~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~ 447 (456)
+++|+++|.||.+++| .++.||++++|++++.+.
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~ 107 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT 107 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEc
Confidence 4555555555555544 345555555555554433
No 241
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.24 E-value=8e-05 Score=75.43 Aligned_cols=65 Identities=18% Similarity=0.405 Sum_probs=49.4
Q ss_pred CceEEEEecCCCCCCcCCCCCCCcccccccC---CcchHHHHHHHHHHC------------C-CCEEEEEecCchhhHHH
Q 012817 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS------------N-IKDLIVVVEGADAALRV 65 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~---gkpli~~~l~~l~~~------------g-i~~v~iv~~~~~~~~~i 65 (456)
++.+||||||.|+|| +...||+|+|++ |||++++.++++... + .-.++|.++... .+.+
T Consensus 106 kvavViLAGG~GTRL----g~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t-~~~t 180 (482)
T PTZ00339 106 EVAVLILAGGLGTRL----GSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFN-HDQT 180 (482)
T ss_pred CeEEEEECCCCcCcC----CCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcch-HHHH
Confidence 467999999999999 678999999994 899999999999764 1 234566655332 3456
Q ss_pred Hhhhhh
Q 012817 66 GGWISA 71 (456)
Q Consensus 66 ~~~~~~ 71 (456)
++++.+
T Consensus 181 ~~~f~~ 186 (482)
T PTZ00339 181 RQFLEE 186 (482)
T ss_pred HHHHHh
Confidence 666654
No 242
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.21 E-value=1.9e-06 Score=75.83 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=40.2
Q ss_pred CceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCC-cEE--eCeEECCCCEECCCcEE-cCeEEC
Q 012817 345 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSN-VKV--VNSVVMNHVTIGDGCSI-QGSVIC 418 (456)
Q Consensus 345 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~-~~i--~~s~i~~~~~ig~~~~i-~~~ii~ 418 (456)
..-|+|.+.||.+..+.. +++||+-++||+++ .|.+++.+|.. -.. ++-.|++||-||.++.| +|.-||
T Consensus 148 gvdihpaa~ig~gilldhatgvvigeTAvvg~~v-----SilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IG 222 (269)
T KOG4750|consen 148 GVDIHPAAKIGKGILLDHATGVVIGETAVVGDNV-----SILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIG 222 (269)
T ss_pred cccccchhhcccceeeccccceeecceeEeccce-----eeecceeeccccccccccCCcccCCeEEccccEEeCCeeEC
Confidence 344667777666655532 34444444444443 44444444431 111 12255666666655554 355566
Q ss_pred CCCEECCCcEe
Q 012817 419 SNAQLQERVAL 429 (456)
Q Consensus 419 ~~~~I~~~~~i 429 (456)
+|++|++|+++
T Consensus 223 egavIaAGsvV 233 (269)
T KOG4750|consen 223 EGAVIAAGSVV 233 (269)
T ss_pred CCcEEeccceE
Confidence 66666666644
No 243
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.16 E-value=9.9e-06 Score=86.61 Aligned_cols=65 Identities=25% Similarity=0.392 Sum_probs=30.9
Q ss_pred EECCCCEECCCcEEeC------eEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEE
Q 012817 382 VIGRHCRIGSNVKVVN------SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY 446 (456)
Q Consensus 382 ~Ig~~~~ig~~~~i~~------s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~ 446 (456)
.||++|.|+++|.|.. .+..++++||++|+|+ +|+|.++++||+++.|. ++++-+|..|.+++..
T Consensus 618 ~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~~s~~ 690 (695)
T TIGR02353 618 TIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRW 690 (695)
T ss_pred EECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcccCCCCEE
Confidence 5555555555555531 1223445555555554 55555555555443332 3444444444444443
No 244
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.11 E-value=2.5e-06 Score=69.98 Aligned_cols=100 Identities=13% Similarity=0.181 Sum_probs=60.0
Q ss_pred ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee--------------eEECCCCEECCCcEEeCeEECCCCEE
Q 012817 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR--------------SVIGRHCRIGSNVKVVNSVVMNHVTI 406 (456)
Q Consensus 341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~--------------s~Ig~~~~ig~~~~i~~s~i~~~~~i 406 (456)
.+++.++++|.+++...+ ++.+||+|+.|++.+.|.| -+||.+-...-+|......++++..|
T Consensus 28 ti~~gcVvHP~a~~iA~a---GPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVi 104 (190)
T KOG4042|consen 28 TIKEGCVVHPFAVFIATA---GPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVI 104 (190)
T ss_pred EecCCcEecceEEEEccc---CCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCcceE
Confidence 445566666666654333 5777888888888877653 35555555544555444456666666
Q ss_pred CCCcEEc-CeEECCCCEECCCcEecC-eEECCCCEECCC
Q 012817 407 GDGCSIQ-GSVICSNAQLQERVALKD-CQVGQGYVVSAG 443 (456)
Q Consensus 407 g~~~~i~-~~ii~~~~~I~~~~~i~~-~~i~~~~~v~~~ 443 (456)
+..|.++ ++.+.++|.||+++.+.. -.+.+++.|-.-
T Consensus 105 eskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga 143 (190)
T KOG4042|consen 105 ESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGA 143 (190)
T ss_pred eeeeEecCCcEEcCCceeccceEEecccccCCcceEEcc
Confidence 6666665 666666666666655542 244555555433
No 245
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.09 E-value=1.2e-05 Score=86.06 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=15.2
Q ss_pred EECCCCEECCCcEEc-CeEECCCCEECCCcEe
Q 012817 399 VVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL 429 (456)
Q Consensus 399 ~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i 429 (456)
+|+++|.||.+|.|. ++.|++++.|++++.+
T Consensus 162 ~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V 193 (695)
T TIGR02353 162 TLGRDAFIGTRSTLDIDTSIGDGAQLGHGSAL 193 (695)
T ss_pred EECCCcEECCCCEEcCCCEECCCCEECCCCEe
Confidence 445555555555552 4555555555544444
No 246
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.03 E-value=3.9e-05 Score=68.80 Aligned_cols=85 Identities=21% Similarity=0.302 Sum_probs=40.3
Q ss_pred CCEECCCCEECCCCeEe---eeEECCCCEECCCcEEe-CeEECCCCEECCC--cEEcCeEECCCCEECCCcEe-cCeEEC
Q 012817 363 HCMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDG--CSIQGSVICSNAQLQERVAL-KDCQVG 435 (456)
Q Consensus 363 ~~~i~~~~~I~~~~~i~---~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~--~~i~~~ii~~~~~I~~~~~i-~~~~i~ 435 (456)
+..+|.+|.++.++.+. +..||.++.+++++.|. ++..++...-..+ ...+.++||++|.||.+++| .+++||
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG 146 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIG 146 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEEC
Confidence 33344444444444421 24577777777777765 3333322222111 11124555555555555544 345555
Q ss_pred CCCEECCCcEEc
Q 012817 436 QGYVVSAGCEYK 447 (456)
Q Consensus 436 ~~~~v~~~~~~~ 447 (456)
+|++|++++.+.
T Consensus 147 ~gavigagsVVt 158 (190)
T COG0110 147 EGAVIGAGSVVT 158 (190)
T ss_pred CCcEEeeCCEEe
Confidence 555555555443
No 247
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.98 E-value=0.0031 Score=63.57 Aligned_cols=191 Identities=11% Similarity=0.112 Sum_probs=101.8
Q ss_pred ceEEEEecCCCCCCcCCCCCCCccccccc-CCcchHHHHHHHHHH----CCCC-EEEEEecCchhhHHHHhhhhhhccCc
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR 76 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi-~gkpli~~~l~~l~~----~gi~-~v~iv~~~~~~~~~i~~~~~~~~~~~ 76 (456)
+-+|.||||.|||| +...||.++|+ .|+++++..++++.. .|.. -.+|.++.. ..+...+++.++...+
T Consensus 80 ~avlkLnGGlGTrm----G~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~-T~~~T~~~l~k~~~~~ 154 (469)
T PLN02474 80 LVVLKLNGGLGTTM----GCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFN-THDDTQKIVEKYTNSN 154 (469)
T ss_pred EEEEEecCCccccc----CCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCc-hhHHHHHHHHHcCCCc
Confidence 45799999999999 88899999999 468998888877743 3433 224444322 2234455554432112
Q ss_pred cceEEEEccC------------------------CcChHH---HHHHH--HhcC---CCCcEEEEcCCcccCCChhHHHH
Q 012817 77 LHVEVATVPE------------------------DVGTAG---ALRAI--AHHL---TAKDVLVVSGDLVSDVPPGAVTA 124 (456)
Q Consensus 77 ~~i~~~~~~~------------------------~~gt~~---al~~~--~~~l---~~~~~lv~~~D~i~~~~l~~~l~ 124 (456)
.++.+..|.. +-|-++ +|+.. ++.+ .-+++.+...|.+...-=-.++.
T Consensus 155 ~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg 234 (469)
T PLN02474 155 IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILN 234 (469)
T ss_pred cceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHH
Confidence 2222221110 123332 22211 1222 23578888889754333334777
Q ss_pred HHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEecCCCc-EEEEeecccccccccccchHHHhhcceeEE
Q 012817 125 AHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIRKSILRAVGQMDI 203 (456)
Q Consensus 125 ~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~-~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 203 (456)
++.+.++++++=+.+....+ ..-|.+.. .+|+ .++.+.+.++ ....... -..
T Consensus 235 ~~~~~~~e~~~ev~~Kt~~d----------------~kgG~l~~-~dgk~~lvEysqvp~---------e~~~~f~-~~~ 287 (469)
T PLN02474 235 HLIQNKNEYCMEVTPKTLAD----------------VKGGTLIS-YEGKVQLLEIAQVPD---------EHVNEFK-SIE 287 (469)
T ss_pred HHHhcCCceEEEEeecCCCC----------------CCccEEEE-ECCEEEEEEEecCCH---------HHHHhhc-ccc
Confidence 88888888765443322111 11244332 2233 3444443221 1110000 012
Q ss_pred ecCCccceEEeechHHHHHHHh
Q 012817 204 RADLMDAHMYAFNRSVLQEVLD 225 (456)
Q Consensus 204 ~~~~~~~giYi~~~~vl~~~~~ 225 (456)
...+.|++.++|+-+.++.+++
T Consensus 288 kf~~fNtnn~w~~L~~l~~~~~ 309 (469)
T PLN02474 288 KFKIFNTNNLWVNLKAIKRLVE 309 (469)
T ss_pred cceeeeeeeEEEEHHHHHHHhh
Confidence 3456799999999999987764
No 248
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.88 E-value=2.9e-05 Score=68.52 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=21.8
Q ss_pred CeEECCCCEECCCcE-ecCeEECCCCEECCCcEE
Q 012817 414 GSVICSNAQLQERVA-LKDCQVGQGYVVSAGCEY 446 (456)
Q Consensus 414 ~~ii~~~~~I~~~~~-i~~~~i~~~~~v~~~~~~ 446 (456)
.-.|++||.||.|+. +.+..||+|++|++|+.+
T Consensus 200 hP~Igd~vliGaGvtILgnV~IGegavIaAGsvV 233 (269)
T KOG4750|consen 200 HPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVV 233 (269)
T ss_pred CCcccCCeEEccccEEeCCeeECCCcEEeccceE
Confidence 346777777777763 456777777777777654
No 249
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.81 E-value=8.7e-05 Score=66.51 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=18.4
Q ss_pred CeEECCCCEECCCcEEc-CeEECCCCEECCCcEecC
Q 012817 397 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD 431 (456)
Q Consensus 397 ~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~ 431 (456)
.++|+++|-||.++.|- +..||++++||+++++.+
T Consensus 124 ~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk 159 (190)
T COG0110 124 PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred CeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence 34555555555555553 455555555555555544
No 250
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.72 E-value=0.00014 Score=64.52 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=62.1
Q ss_pred CCcccccccCC--cchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc-cCCcChHHHHHHHHh
Q 012817 23 EVPKALLPVAN--RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV-PEDVGTAGALRAIAH 99 (456)
Q Consensus 23 ~~pK~llpi~g--kpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~-~~~~gt~~al~~~~~ 99 (456)
+.+|+|+++.| +|||+|+++.+. ..+++++|+++... ... . ..+.++.. ....|+..++..+++
T Consensus 2 G~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~~---~~~----~-----~~~~~i~d~~~g~gpl~~~~~gl~ 68 (178)
T PRK00576 2 GRDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPGQ---PLP----E-----LPAPVLRDELRGLGPLPATGRGLR 68 (178)
T ss_pred CCCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCCc---ccc----c-----CCCCEeccCCCCCCcHHHHHHHHH
Confidence 46899999999 999999999876 45899999987431 110 1 11233321 123566665554443
Q ss_pred cC---CCCcEEEEcCC--cccCCChhHHHHHHHhcCc
Q 012817 100 HL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA 131 (456)
Q Consensus 100 ~l---~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a 131 (456)
.. ..+.+++++|| ++....+..+++.+...++
T Consensus 69 ~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~~ 105 (178)
T PRK00576 69 AAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQTDA 105 (178)
T ss_pred HHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCCC
Confidence 22 34679999999 4555567777776544433
No 251
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.70 E-value=0.00014 Score=64.61 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=50.4
Q ss_pred CCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEecC-eEECCCCEECCCcEE
Q 012817 369 GSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD-CQVGQGYVVSAGCEY 446 (456)
Q Consensus 369 ~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~-~~i~~~~~v~~~~~~ 446 (456)
.+.||.++.++-.++++.+.+|+++.|...++..++.|+.+|.+. |.++++++.||.++.|.+ .++...--+++++.+
T Consensus 22 dViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~I 101 (277)
T COG4801 22 DVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVII 101 (277)
T ss_pred cEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEE
Confidence 344455555555677777777777777777777777777777774 677777777777776653 233333334444444
Q ss_pred cC
Q 012817 447 KG 448 (456)
Q Consensus 447 ~~ 448 (456)
++
T Consensus 102 eg 103 (277)
T COG4801 102 EG 103 (277)
T ss_pred ec
Confidence 44
No 252
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.52 E-value=0.013 Score=55.99 Aligned_cols=191 Identities=13% Similarity=0.125 Sum_probs=102.6
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccC-CcchHHHHHHHHHH----CCCC-EEEEEecCchhhHHHHhhhhhhccCc
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR 76 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~-gkpli~~~l~~l~~----~gi~-~v~iv~~~~~~~~~i~~~~~~~~~~~ 76 (456)
.-+|+||||.|+|| +...||.++|+. |+++++..++++.. .+.. -.+|.++.. ..+...+++.+.....
T Consensus 4 vavl~LaGG~GTRL----G~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~-T~~~T~~~l~~~~~~~ 78 (300)
T cd00897 4 LVVLKLNGGLGTSM----GCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFN-TDEDTKKILKKYAGVN 78 (300)
T ss_pred EEEEEecCCccccc----CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCc-chHHHHHHHHHcCCCc
Confidence 45799999999999 888999999995 57999999988854 3432 344444433 2334555655432211
Q ss_pred cceEEEEc--------------c---C-------CcChHHHHHHH-----HhcC---CCCcEEEEcCCcccCCChhHHHH
Q 012817 77 LHVEVATV--------------P---E-------DVGTAGALRAI-----AHHL---TAKDVLVVSGDLVSDVPPGAVTA 124 (456)
Q Consensus 77 ~~i~~~~~--------------~---~-------~~gt~~al~~~-----~~~l---~~~~~lv~~~D~i~~~~l~~~l~ 124 (456)
..+.+..| + . +.|-++..... ++.+ .-+++.+...|.+....=-.++-
T Consensus 79 ~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg 158 (300)
T cd00897 79 VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILN 158 (300)
T ss_pred cCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHH
Confidence 12222111 0 0 12333322211 1111 23578888889754432233778
Q ss_pred HHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEecCCCc-EEEEeecccccccccccchHHHhhcceeEE
Q 012817 125 AHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIRKSILRAVGQMDI 203 (456)
Q Consensus 125 ~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~-~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 203 (456)
++..+++++++=+.+.. .+. +.-|++... +|+ .++.+.+.++ ....... -..
T Consensus 159 ~~~~~~~~~~~evv~Kt--~~d--------------ek~G~l~~~-~g~~~vvEyse~p~---------e~~~~~~-~~~ 211 (300)
T cd00897 159 HMVDNKAEYIMEVTDKT--RAD--------------VKGGTLIQY-EGKLRLLEIAQVPK---------EHVDEFK-SIK 211 (300)
T ss_pred HHHhcCCceEEEEeecC--CCC--------------CcccEEEEE-CCEEEEEEeccCCH---------HHHHhhc-Ccc
Confidence 88888888775333221 211 123444332 233 3444443221 1100000 011
Q ss_pred ecCCccceEEeechHHHHHHHh
Q 012817 204 RADLMDAHMYAFNRSVLQEVLD 225 (456)
Q Consensus 204 ~~~~~~~giYi~~~~vl~~~~~ 225 (456)
.....|++.++|+-+.|+.+++
T Consensus 212 ~~~~~nt~n~~~~l~~L~~~~~ 233 (300)
T cd00897 212 KFKIFNTNNLWVNLKAVKRVVE 233 (300)
T ss_pred cceEEEEeEEEEEHHHHHHHHH
Confidence 2446788999999998887753
No 253
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.34 E-value=0.001 Score=59.21 Aligned_cols=95 Identities=20% Similarity=0.355 Sum_probs=70.9
Q ss_pred eCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEECC
Q 012817 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQE 425 (456)
Q Consensus 348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~ 425 (456)
+...+.||+++.+. ..++++....|++++|...+++.+|.|+.+|.+. |.+...+..||+++.|+ .-++..+-.||+
T Consensus 19 v~gdViIG~nS~l~-~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~ 97 (277)
T COG4801 19 VKGDVIIGKNSMLK-YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGA 97 (277)
T ss_pred EeccEEEcccceee-eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEeccccccc
Confidence 33444444444442 2246677777888888888899999999999998 66678889999999996 677778888888
Q ss_pred CcEecCeEECCCCEECCC
Q 012817 426 RVALKDCQVGQGYVVSAG 443 (456)
Q Consensus 426 ~~~i~~~~i~~~~~v~~~ 443 (456)
.+.|++..+.+|-++-.+
T Consensus 98 dV~Ieggfva~g~Ivirn 115 (277)
T COG4801 98 DVIIEGGFVAKGWIVIRN 115 (277)
T ss_pred ceEEecCeeecceEEEcC
Confidence 888888887777766443
No 254
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.08 E-value=0.00069 Score=41.97 Aligned_cols=9 Identities=56% Similarity=1.158 Sum_probs=2.5
Q ss_pred CCCCEECCC
Q 012817 384 GRHCRIGSN 392 (456)
Q Consensus 384 g~~~~ig~~ 392 (456)
|++|.||.+
T Consensus 5 G~~~~ig~~ 13 (34)
T PF14602_consen 5 GDNCFIGAN 13 (34)
T ss_dssp -TTEEE-TT
T ss_pred CCCEEECcc
Confidence 333333333
No 255
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=96.78 E-value=0.11 Score=52.87 Aligned_cols=194 Identities=11% Similarity=0.100 Sum_probs=102.7
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccC---CcchHHHHHHHHHHC--------------CC-CEEEEEecCchhhHH
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------------NI-KDLIVVVEGADAALR 64 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~---gkpli~~~l~~l~~~--------------gi-~~v~iv~~~~~~~~~ 64 (456)
.-+|+||||.|+|| +...||.+++|+ ++++++...+++... +. --.+|.++... .+.
T Consensus 117 vavvlLAGGqGTRL----G~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T-~~~ 191 (493)
T PLN02435 117 LAVVLLSGGQGTRL----GSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFT-DEA 191 (493)
T ss_pred EEEEEeCCCccccc----CCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcch-hHH
Confidence 34688899999999 888999999885 789999988886431 11 12355555332 235
Q ss_pred HHhhhhhhc--c-CccceEEEEcc---------------------CCcChHHHHHHH-----HhcC---CCCcEEEEcCC
Q 012817 65 VGGWISAAY--V-DRLHVEVATVP---------------------EDVGTAGALRAI-----AHHL---TAKDVLVVSGD 112 (456)
Q Consensus 65 i~~~~~~~~--~-~~~~i~~~~~~---------------------~~~gt~~al~~~-----~~~l---~~~~~lv~~~D 112 (456)
..+++.+.. . ..-++.+..|. .+.|.++..... ++.+ .-+++.+..-|
T Consensus 192 T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 271 (493)
T PLN02435 192 TRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVD 271 (493)
T ss_pred HHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecc
Confidence 566665421 1 11123333221 123444433222 1222 12456666667
Q ss_pred c-ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEe-cCCCc-EEEEeecccccccccc
Q 012817 113 L-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGM-DPTKQ-FLLHIATGAELEKDTR 189 (456)
Q Consensus 113 ~-i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~-d~~~~-~l~~~~~~~~~~k~~~ 189 (456)
. +....--.++-.+...++++..-+.+. .+|. +.-|++.. +.+++ .++.+.+.. +...
T Consensus 272 N~L~~~~DP~flG~~~~~~~d~~~kVv~K--~~~~--------------EkvG~i~~~~~~g~~~vvEYsEl~---~~~~ 332 (493)
T PLN02435 272 NALVRVADPTFLGYFIDKGVASAAKVVRK--AYPQ--------------EKVGVFVRRGKGGPLTVVEYSELD---QAMA 332 (493)
T ss_pred cccccccCHHHHHHHHhcCCceEEEeeec--CCCC--------------CceeEEEEecCCCCEEEEEeccCC---HHHH
Confidence 5 344444457778888888876643322 1221 12355543 33443 233443321 1100
Q ss_pred cchHHHhhcceeEEecCCccceEEeechHHHHHHH
Q 012817 190 IRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL 224 (456)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~ 224 (456)
.. ....+........|..+++|+.++|+.+.
T Consensus 333 --~~--~~~~~g~L~~~~gnI~~h~fs~~fL~~~~ 363 (493)
T PLN02435 333 --SA--INQQTGRLRYCWSNVCLHMFTLDFLNQVA 363 (493)
T ss_pred --hc--cCccccccccchhhHHHhhccHHHHHHHH
Confidence 00 00001123455678888999999998774
No 256
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=96.72 E-value=0.0087 Score=65.47 Aligned_cols=62 Identities=21% Similarity=0.162 Sum_probs=38.9
Q ss_pred eEeeeEECCCCEECCCcE-EeCeEECCCCEECCCcEEcCeE-ECCCCEECCCcEecCeEECCCC
Q 012817 377 SVKRSVIGRHCRIGSNVK-VVNSVVMNHVTIGDGCSIQGSV-ICSNAQLQERVALKDCQVGQGY 438 (456)
Q Consensus 377 ~i~~s~Ig~~~~ig~~~~-i~~s~i~~~~~ig~~~~i~~~i-i~~~~~I~~~~~i~~~~i~~~~ 438 (456)
.|.||++..++.+++++. |++|.|+.+++||++|.|.++- ...+..|.+++.|+..-++...
T Consensus 333 ~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~vpl~~~~ 396 (974)
T PRK13412 333 FVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDVVPVGDRG 396 (974)
T ss_pred EEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEEEEEcCCCc
Confidence 455666677777777633 6677777777777777777664 3345666666666554444433
No 257
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=96.71 E-value=0.089 Score=52.89 Aligned_cols=132 Identities=19% Similarity=0.241 Sum_probs=75.0
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccC-CcchHHHHHHHHHH----CCCC-EEEEEecCchhhHHHHhhhhhhccCc
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR 76 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~-gkpli~~~l~~l~~----~gi~-~v~iv~~~~~~~~~i~~~~~~~~~~~ 76 (456)
+-+|+||||.|+|| +...||.++|+. ++.+++..++++.. .+.. -.+|.++... .+..++++.+++...
T Consensus 57 vavl~LaGGlGTrl----G~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~kyfg~~ 131 (420)
T PF01704_consen 57 VAVLKLAGGLGTRL----GCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNT-HEDTRKFLEKYFGLD 131 (420)
T ss_dssp EEEEEEEESBSGCC----TESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTT-HHHHHHHHHHGCGSS
T ss_pred EEEEEEcCcccCcc----CCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCccc-HHHHHHHHHHhcCCC
Confidence 45688999999999 888999999995 56788888877754 3432 3455555332 245566665533222
Q ss_pred cceEEEEcc-----------------------C---CcChHHHHHHH-----HhcC---CCCcEEEEcCCcccCCChhHH
Q 012817 77 LHVEVATVP-----------------------E---DVGTAGALRAI-----AHHL---TAKDVLVVSGDLVSDVPPGAV 122 (456)
Q Consensus 77 ~~i~~~~~~-----------------------~---~~gt~~al~~~-----~~~l---~~~~~lv~~~D~i~~~~l~~~ 122 (456)
..+.+..|. . +.|.++..... ++.+ .-+++.+...|.+....=-.+
T Consensus 132 ~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~ 211 (420)
T PF01704_consen 132 VDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVF 211 (420)
T ss_dssp CCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHH
T ss_pred cceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHH
Confidence 222222110 0 11444322221 1111 236788888897554433347
Q ss_pred HHHHHhcCceEEEEEee
Q 012817 123 TAAHRRHDAVVTAMICS 139 (456)
Q Consensus 123 l~~~~~~~a~~t~~~~~ 139 (456)
+-.+.+.++++.+=+.+
T Consensus 212 lG~~~~~~~~~~~evv~ 228 (420)
T PF01704_consen 212 LGYMIEKNADFGMEVVP 228 (420)
T ss_dssp HHHHHHTT-SEEEEEEE
T ss_pred HHHHHhccchhheeeee
Confidence 88888888887665554
No 258
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=96.55 E-value=0.009 Score=53.67 Aligned_cols=85 Identities=21% Similarity=0.175 Sum_probs=59.7
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCC--CcEEEEc
Q 012817 33 NRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA--KDVLVVS 110 (456)
Q Consensus 33 gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~--~~~lv~~ 110 (456)
-+|||+|+++.+..+++.+++++++.. .+..+... .++.++..+ ..|...+++.+++++.. +.++++.
T Consensus 29 ~~~ll~~~l~~l~~~~~~~vvvv~~~~----~~~~~~~~-----~~v~~i~~~-~~G~~~si~~al~~~~~~~~~vlv~~ 98 (195)
T TIGR03552 29 ALAMLRDVITALRGAGAGAVLVVSPDP----ALLEAARN-----LGAPVLRDP-GPGLNNALNAALAEAREPGGAVLILM 98 (195)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCH----HHHHHHHh-----cCCEEEecC-CCCHHHHHHHHHHHhhccCCeEEEEe
Confidence 369999999999998878888887643 22222221 234454433 34899999998876643 3699999
Q ss_pred CC--cccCCChhHHHHHHH
Q 012817 111 GD--LVSDVPPGAVTAAHR 127 (456)
Q Consensus 111 ~D--~i~~~~l~~~l~~~~ 127 (456)
|| ++....++.+++.+.
T Consensus 99 ~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 99 ADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCCHHHHHHHHHhcc
Confidence 99 566778888888664
No 259
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=96.22 E-value=0.024 Score=54.45 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=45.4
Q ss_pred EEEEecCCCCCCcCCCCCCCccccccc---CCcchHHHHHHHHHHCC--------C-CEEEEEecCchhhHHHHhhhhh
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLELSN--------I-KDLIVVVEGADAALRVGGWISA 71 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi---~gkpli~~~l~~l~~~g--------i-~~v~iv~~~~~~~~~i~~~~~~ 71 (456)
+|+||||.|+|| +...||.++|+ .|+++++...+++.... . --.+|.++... .+...+++.+
T Consensus 3 ~vllaGG~GTRL----G~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~T-h~~T~~~fe~ 76 (315)
T cd06424 3 FVLVAGGLGERL----GYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDT-HSKTLKLLEE 76 (315)
T ss_pred EEEecCCCcccc----CCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCch-hHHHHHHHHH
Confidence 689999999999 88999999999 48999999998885421 1 23455555432 3456666653
No 260
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.19 E-value=0.31 Score=48.80 Aligned_cols=40 Identities=30% Similarity=0.537 Sum_probs=35.0
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccC-CcchHHHHHHHHHH
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL 46 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~-gkpli~~~l~~l~~ 46 (456)
+-+|+||||.|+|| +...||.+++|. |+++++.+.+.++.
T Consensus 106 lAvl~LaGGqGtrl----G~~gPKgl~~V~~gks~~dl~~~qIk~ 146 (472)
T COG4284 106 LAVLKLAGGQGTRL----GCDGPKGLFEVKDGKSLFDLQAEQIKY 146 (472)
T ss_pred eEEEEecCCccccc----ccCCCceeEEecCCCcHHHHHHHHHHH
Confidence 45799999999999 778999999999 89999998887753
No 261
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=96.03 E-value=0.015 Score=58.46 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=41.9
Q ss_pred CEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCC
Q 012817 370 SQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSN 420 (456)
Q Consensus 370 ~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~ 420 (456)
+.+.+++.|.+|++..++.+|++++|++|.|..+++||++|.|.++-+...
T Consensus 274 ~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~ 324 (414)
T PF07959_consen 274 SDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSW 324 (414)
T ss_pred cccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCccccc
Confidence 445666788889999999999999999999999999999999987755443
No 262
>PLN02830 UDP-sugar pyrophosphorylase
Probab=95.59 E-value=1 Score=47.57 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=76.0
Q ss_pred ceEEEEecCCCCCCcCCCCCCCccccccc---CCcchHHHHHHHHHHC-----------CC-CEEEEEecCchhhHHHHh
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLELS-----------NI-KDLIVVVEGADAALRVGG 67 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi---~gkpli~~~l~~l~~~-----------gi-~~v~iv~~~~~~~~~i~~ 67 (456)
+-+|+||||.|+|| +...||.++|+ .|+++++..++++... +. --.+|.++... .+...+
T Consensus 129 vavllLaGGlGTRL----G~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T-~~~T~~ 203 (615)
T PLN02830 129 AAFVLVAGGLGERL----GYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDT-HARTLK 203 (615)
T ss_pred EEEEEecCCccccc----CCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcch-hHHHHH
Confidence 45789999999999 88899999997 3899999999987543 11 23455555332 235556
Q ss_pred hhhhhc--c-CccceEEEEcc------------------C------CcChHHHHHHHHh------cC---CCCcEEEEcC
Q 012817 68 WISAAY--V-DRLHVEVATVP------------------E------DVGTAGALRAIAH------HL---TAKDVLVVSG 111 (456)
Q Consensus 68 ~~~~~~--~-~~~~i~~~~~~------------------~------~~gt~~al~~~~~------~l---~~~~~lv~~~ 111 (456)
++.+.. . ..-++.++.|. . +.|-++ ++.++. .+ .-+++.+..-
T Consensus 204 ~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGd-i~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 204 LLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGD-VHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccH-HHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 665421 1 11122222111 0 123333 333321 11 1245666666
Q ss_pred Cc-ccCCChhHHHHHHHhcCceEEEEEee
Q 012817 112 DL-VSDVPPGAVTAAHRRHDAVVTAMICS 139 (456)
Q Consensus 112 D~-i~~~~l~~~l~~~~~~~a~~t~~~~~ 139 (456)
|. +.....-.++-.+...++++..-+.+
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~ 311 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVP 311 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEE
Confidence 63 33333467888888888888766654
No 263
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.55 E-value=0.21 Score=41.48 Aligned_cols=96 Identities=21% Similarity=0.136 Sum_probs=61.2
Q ss_pred cccCC-cchHHHHHHHHHHCC--CCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCCc
Q 012817 29 LPVAN-RPVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (456)
Q Consensus 29 lpi~g-kpli~~~l~~l~~~g--i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~ 105 (456)
+|..| .+++.++++.+.+.+ ..+++|+.+.... .......+.................|.+.++..+++....+.
T Consensus 3 i~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ 80 (156)
T cd00761 3 IPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTD--GTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAARGEY 80 (156)
T ss_pred EeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCc--cHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhcCCE
Confidence 45555 489999999999887 6788888764422 222222221111112344445566888999888888877678
Q ss_pred EEEEcCCcccCCC-hhHHHHHH
Q 012817 106 VLVVSGDLVSDVP-PGAVTAAH 126 (456)
Q Consensus 106 ~lv~~~D~i~~~~-l~~~l~~~ 126 (456)
++++.+|.+...+ +..++..+
T Consensus 81 v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 81 ILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred EEEECCCCccCccHHHHHHHHH
Confidence 9999999777665 44443433
No 264
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=95.21 E-value=0.033 Score=56.14 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=35.3
Q ss_pred CCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECC
Q 012817 386 HCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQ 436 (456)
Q Consensus 386 ~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~ 436 (456)
.+.+.+.+.|.+|+|..++.+|+++.|++|.|+.++.||++++|.++-+..
T Consensus 273 ~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 273 PSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred ccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccc
Confidence 445566667777777777777777777777777777777777776664433
No 265
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.38 E-value=0.4 Score=40.72 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=68.9
Q ss_pred ccccCCc-chHHHHHHHHHHC--CCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCC
Q 012817 28 LLPVANR-PVLSYVLEQLELS--NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (456)
Q Consensus 28 llpi~gk-pli~~~l~~l~~~--gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~ 104 (456)
++|.-++ ..|..+|+.+.+. ...+++|+-+... +...+.+.+.......+.++..++..|.+.++..+++....+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~--d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~ 80 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGST--DETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGE 80 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-S--SSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SS
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccc--ccccccccccccccccccccccccccccccccccccccccee
Confidence 3566665 6888999988765 3456766655331 112222222211234577887777778889988888888778
Q ss_pred cEEEEcCCcccCC-ChhHHHHHHHhcCceEEEEE
Q 012817 105 DVLVVSGDLVSDV-PPGAVTAAHRRHDAVVTAMI 137 (456)
Q Consensus 105 ~~lv~~~D~i~~~-~l~~~l~~~~~~~a~~t~~~ 137 (456)
.++++..|.+... .+..+++.+.+.+.++.+..
T Consensus 81 ~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 81 YILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 8999999965554 48899999888777654443
No 266
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=88.00 E-value=6.8 Score=34.58 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=60.2
Q ss_pred ccccCCcc---hHHHHHHHHHHCC--CCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCC
Q 012817 28 LLPVANRP---VLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (456)
Q Consensus 28 llpi~gkp---li~~~l~~l~~~g--i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~ 102 (456)
++|..++. .|..+|+.+.+.. -.+++|+-.... .+...+.+... ..+.++.++..+...|.+.+.-.+++...
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss-~d~t~~~~~~~-~~~~~i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPV-TQSLNEVLEEF-KRKLPLKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCC-chhHHHHHHHH-HhcCCeEEEEcCccccHHHHHHHHHHhcC
Confidence 45666653 7999999997653 256655544221 11122212111 11223556555566888888888887776
Q ss_pred CCcEEEEcCCccc-CCChhHHHHHHHhc
Q 012817 103 AKDVLVVSGDLVS-DVPPGAVTAAHRRH 129 (456)
Q Consensus 103 ~~~~lv~~~D~i~-~~~l~~~l~~~~~~ 129 (456)
.+.++++.+|.+. +..++.+++...+.
T Consensus 81 gd~i~~lD~Dd~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 81 YDWVARMDTDDISLPDRFEKQLDFIEKN 108 (201)
T ss_pred CCEEEEeCCccccCcHHHHHHHHHHHhC
Confidence 6778999999544 44588888876543
No 267
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.92 E-value=7.7 Score=32.65 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=60.5
Q ss_pred cccCCc-chHHHHHHHHHHCC--CCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCCc
Q 012817 29 LPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (456)
Q Consensus 29 lpi~gk-pli~~~l~~l~~~g--i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~ 105 (456)
+|.-++ ..+..+++.+.+.. ..+++|+-+.... ...+.+.+.. . .+.+...+...|.+.++..+++....+.
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~--~~~~~~~~~~-~--~~~~~~~~~~~g~~~a~n~~~~~~~~~~ 77 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTD--GSVELLRELF-P--EVRLIRNGENLGFGAGNNQGIREAKGDY 77 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCc--hHHHHHHHhC-C--CeEEEecCCCcChHHHhhHHHhhCCCCE
Confidence 455554 68899999997653 4567776653321 1222222221 1 3555555667899999988888887677
Q ss_pred EEEEcCCcccCC-ChhHHHHHHHhc
Q 012817 106 VLVVSGDLVSDV-PPGAVTAAHRRH 129 (456)
Q Consensus 106 ~lv~~~D~i~~~-~l~~~l~~~~~~ 129 (456)
++++..|..... .+..+++.+.+.
T Consensus 78 i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 78 VLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred EEEECCCcEECccHHHHHHHHHHhC
Confidence 888888865544 477777765544
No 268
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=87.84 E-value=0.56 Score=42.65 Aligned_cols=109 Identities=25% Similarity=0.288 Sum_probs=52.6
Q ss_pred ceEEEEecCCC---CCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817 3 FQVVVLAGGTS---KKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (456)
Q Consensus 3 ~~aiIlagG~g---~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i 79 (456)
|.+||+.-..+ +||.|. .+-.--.=.-+-|+..++..+.. ++ +++++... .+..... ....+
T Consensus 1 m~~VIPvK~~~~aKSRLs~~----L~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d~----~v~~~a~----~~~g~ 65 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPV----LSPEEREALALAMLRDVLAALRA--VD-VVVVSRDP----EVAALAR----ARLGA 65 (217)
T ss_dssp -EEEEE---TT-TTGGGTTT----S-HHHHHHHHHHHHHHHHHHHHH---S-EEEEES------S-TTTTT-------SS
T ss_pred CeEEEEcCCCCccccccCcc----CCHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccch----hhhhhhh----hccCC
Confidence 67788874333 566432 11100000123599999999977 56 77777643 2222111 12345
Q ss_pred EEEEccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHH
Q 012817 80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHR 127 (456)
Q Consensus 80 ~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~ 127 (456)
.++..+ ..|.-.++..+......+.++++++| .+...++..++....
T Consensus 66 ~vl~d~-~~gLN~Al~~a~~~~~~~~vlvl~aDLPll~~~dl~~~l~~~~ 114 (217)
T PF01983_consen 66 EVLPDP-GRGLNAALNAALAAAGDDPVLVLPADLPLLTPEDLDALLAAAG 114 (217)
T ss_dssp EEEE----S-HHHHHHHHHH-H--S-EEEE-S--TT--HHHHHHHCT-SS
T ss_pred eEecCC-CCCHHHHHHHHHhccCCCceEEeecCCccCCHHHHHHHHhccC
Confidence 665433 47777888887544456789999999 677788998887643
No 269
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=87.26 E-value=4.6 Score=35.04 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=62.5
Q ss_pred cccCCc-chHHHHHHHHHHC----CCCEEEEEecCch-h-hHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcC
Q 012817 29 LPVANR-PVLSYVLEQLELS----NIKDLIVVVEGAD-A-ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL 101 (456)
Q Consensus 29 lpi~gk-pli~~~l~~l~~~----gi~~v~iv~~~~~-~-~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l 101 (456)
+|..+. ..|..+|+.+.+. ...+++|+-+... . .+.++++..+. ..+.++..+...|.+.++..+++..
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~----~~~~~~~~~~n~G~~~a~n~g~~~a 78 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARV----PRVRVIRLSRNFGKGAAVRAGFKAA 78 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhC----CCeEEEEccCCCCccHHHHHHHHHh
Confidence 344444 4677788888665 2566776654321 1 12333333221 1234555566688888888887777
Q ss_pred CCCcEEEEcCCccc-CCChhHHHHHHHhcCceEEE
Q 012817 102 TAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVTA 135 (456)
Q Consensus 102 ~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~a~~t~ 135 (456)
..+.++++.+|... +..++.+++...+.+.++.+
T Consensus 79 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 79 RGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 66789999999544 44588888875665665543
No 270
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=86.78 E-value=0.84 Score=50.50 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=33.0
Q ss_pred CCCEECCCCEECCCCe-EeeeEECCCCEECCCcEEeCeE-ECCCCEECCCcEEcCeEE
Q 012817 362 PHCMLGEGSQMGDKCS-VKRSVIGRHCRIGSNVKVVNSV-VMNHVTIGDGCSIQGSVI 417 (456)
Q Consensus 362 ~~~~i~~~~~I~~~~~-i~~s~Ig~~~~ig~~~~i~~s~-i~~~~~ig~~~~i~~~ii 417 (456)
-|+++..++.+++++. |.+|.|+.++.||++++|.++- ...+.+|-+++.|...=+
T Consensus 335 ~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~vpl 392 (974)
T PRK13412 335 QNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDVVPV 392 (974)
T ss_pred EeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEEEEEc
Confidence 5666666666666644 5556677777777666666553 222456666666654333
No 271
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=85.05 E-value=8.7 Score=32.31 Aligned_cols=98 Identities=22% Similarity=0.219 Sum_probs=58.8
Q ss_pred cccCCc-chHHHHHHHHHHCC--CCEEEEEecCchh--hHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCC
Q 012817 29 LPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADA--ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (456)
Q Consensus 29 lpi~gk-pli~~~l~~l~~~g--i~~v~iv~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~ 103 (456)
+|.-++ ..|..+|+.+.+.. ..+++|+-+.... .+.+.++.... ...+.+...+...|.+.++..+++....
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~n~~~~~~~~ 79 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALY---IRRVLVVRDKENGGKAGALNAGLRHAKG 79 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccc---cceEEEEEecccCCchHHHHHHHHhcCC
Confidence 455554 68888899987764 3566666543221 12233222111 1123344445568888888888888877
Q ss_pred CcEEEEcCCcccCC-ChhHHHHHHHhc
Q 012817 104 KDVLVVSGDLVSDV-PPGAVTAAHRRH 129 (456)
Q Consensus 104 ~~~lv~~~D~i~~~-~l~~~l~~~~~~ 129 (456)
+.++++.+|.+... .+..++..+.+.
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhccC
Confidence 78999999955544 477775555443
No 272
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=83.54 E-value=8.5 Score=34.44 Aligned_cols=104 Identities=21% Similarity=0.212 Sum_probs=60.7
Q ss_pred cccCCc-chHHHHHHHHHHC------CCCEEEEEecCc-hhh-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHh
Q 012817 29 LPVANR-PVLSYVLEQLELS------NIKDLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAH 99 (456)
Q Consensus 29 lpi~gk-pli~~~l~~l~~~------gi~~v~iv~~~~-~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~ 99 (456)
+|.-+. .-|..+|+.+.+. ..-+++|+-+.. +.. +.++++.... ...+.++..+...|.+.++..+++
T Consensus 3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~---~~~i~~i~~~~n~G~~~a~~~g~~ 79 (211)
T cd04188 3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKN---PALIRVLTLPKNRGKGGAVRAGML 79 (211)
T ss_pred EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhC---CCcEEEEEcccCCCcHHHHHHHHH
Confidence 444443 4566666666543 234666664322 111 2333333221 111355555566899999998888
Q ss_pred cCCCCcEEEEcCCccc-CCChhHHHHHHHhcCceEEE
Q 012817 100 HLTAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVTA 135 (456)
Q Consensus 100 ~l~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~a~~t~ 135 (456)
....+.++++.+|... ...+..+++...+.+.++.+
T Consensus 80 ~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (211)
T cd04188 80 AARGDYILFADADLATPFEELEKLEEALKTSGYDIAI 116 (211)
T ss_pred HhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 7777889999999544 44588888875555555544
No 273
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=83.51 E-value=19 Score=33.09 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=63.9
Q ss_pred CCCcc--cccccCCc-chHHHHHHHHHHCCC----CEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHH
Q 012817 22 KEVPK--ALLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGAL 94 (456)
Q Consensus 22 ~~~pK--~llpi~gk-pli~~~l~~l~~~gi----~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al 94 (456)
...|+ -++|..|. ..|..+|+.+.+... -+++|+.+.... ...+.+.+.. .. .+.++..+...|.+.++
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d--~t~~~~~~~~-~~-~v~~i~~~~~~g~~~a~ 101 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTD--GTAEIAREYA-DK-GVKLLRFPERRGKAAAL 101 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCc--cHHHHHHHHh-hC-cEEEEEcCCCCChHHHH
Confidence 34444 45677665 578888888765432 256666543221 1222222211 11 35666556667888888
Q ss_pred HHHHhcCCCCcEEEEcCCcccCC-ChhHHHHHHHhcC
Q 012817 95 RAIAHHLTAKDVLVVSGDLVSDV-PPGAVTAAHRRHD 130 (456)
Q Consensus 95 ~~~~~~l~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~ 130 (456)
..+++....+.++++.+|.+... .+.++++...+.+
T Consensus 102 n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 138 (251)
T cd06439 102 NRALALATGEIVVFTDANALLDPDALRLLVRHFADPS 138 (251)
T ss_pred HHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCC
Confidence 88888777778999999965554 4888887765433
No 274
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=83.11 E-value=7.3 Score=35.04 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=61.9
Q ss_pred cccCCc-chHHHHHHHHHHCC---CCEEEEEecCc-hhh-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCC
Q 012817 29 LPVANR-PVLSYVLEQLELSN---IKDLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (456)
Q Consensus 29 lpi~gk-pli~~~l~~l~~~g---i~~v~iv~~~~-~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~ 102 (456)
+|.-+. ..|..+|+.+.+.- ..+++|+-+.. +.. +.++++.... ..+.+.......|.+.++-.+++...
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~----~~i~~~~~~~n~G~~~a~n~g~~~a~ 78 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEY----PRVRLIVRPGKRGLGSAYIEGFKAAR 78 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhC----CceEEEecCCCCChHHHHHHHHHHcC
Confidence 455454 56788888886542 34666664422 111 2233333221 12455555667888888888888777
Q ss_pred CCcEEEEcCCcccCC-ChhHHHHHHHhcCceEE
Q 012817 103 AKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVT 134 (456)
Q Consensus 103 ~~~~lv~~~D~i~~~-~l~~~l~~~~~~~a~~t 134 (456)
.+.++++.+|..... .+..+++.....+.++.
T Consensus 79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 678889999955443 47788887555555543
No 275
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=83.08 E-value=1.8 Score=34.06 Aligned_cols=61 Identities=18% Similarity=0.314 Sum_probs=35.9
Q ss_pred CCEECCCcEEeCeEECCCCEECCCcEEcCeEEC-CCCEECCCcEecCeEECCCCEECCCcEEcC
Q 012817 386 HCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVIC-SNAQLQERVALKDCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 386 ~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~-~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~ 448 (456)
...|+.++.|...+-.+.+.|.- . +.+.+.. ..+.|...+.+.+.+-.+.-.|.+++.+.|
T Consensus 36 ~v~i~~~~~v~G~i~~~~~~i~G-~-v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~G 97 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKADDVIISG-S-VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASING 97 (101)
T ss_pred EEEEcCCCEEEEEEEEeEEEEcC-E-EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEEE
Confidence 56666666666555555555532 2 4433333 556677777776666666666666666655
No 276
>PRK10073 putative glycosyl transferase; Provisional
Probab=81.61 E-value=12 Score=36.60 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=62.6
Q ss_pred cccCC-cchHHHHHHHHHHCCCC--EEEEEecCc-hhh-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCC
Q 012817 29 LPVAN-RPVLSYVLEQLELSNIK--DLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (456)
Q Consensus 29 lpi~g-kpli~~~l~~l~~~gi~--~v~iv~~~~-~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~ 103 (456)
+|+-+ ...|..+|+.+.+.... +++|+-... +.+ +.++++.... ..+.+.. .+..|.+.+.-.+++....
T Consensus 12 IP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~----~~i~vi~-~~n~G~~~arN~gl~~a~g 86 (328)
T PRK10073 12 IPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENY----PHVRLLH-QANAGVSVARNTGLAVATG 86 (328)
T ss_pred EeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhC----CCEEEEE-CCCCChHHHHHHHHHhCCC
Confidence 55544 36889999999765433 555554322 212 2233333221 1355543 3457887777777887777
Q ss_pred CcEEEEcCC-cccCCChhHHHHHHHhcCceEEE
Q 012817 104 KDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTA 135 (456)
Q Consensus 104 ~~~lv~~~D-~i~~~~l~~~l~~~~~~~a~~t~ 135 (456)
+.++++.+| .+.+..++.+++...+.+.++.+
T Consensus 87 ~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 87 KYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred CEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 889999999 45555588888877766777644
No 277
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=81.52 E-value=23 Score=32.43 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=59.2
Q ss_pred cccCCc-chHHHHHHHHHHCCC----CEEEEEecCc-hhh-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcC
Q 012817 29 LPVANR-PVLSYVLEQLELSNI----KDLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL 101 (456)
Q Consensus 29 lpi~gk-pli~~~l~~l~~~gi----~~v~iv~~~~-~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l 101 (456)
+|.-+. -.|..+|+.+.+... -+++|+.... +.. +.++++... ....+.+.......|.+.++..+++..
T Consensus 7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~---~~~~i~~~~~~~~~G~~~a~n~g~~~a 83 (241)
T cd06427 7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLP---SIFRVVVVPPSQPRTKPKACNYALAFA 83 (241)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccC---CCeeEEEecCCCCCchHHHHHHHHHhc
Confidence 444443 467788888876432 2455554422 111 122222110 111222222223467888888888877
Q ss_pred CCCcEEEEcCCcccCC-ChhHHHHHHHhcCceEEEE
Q 012817 102 TAKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVTAM 136 (456)
Q Consensus 102 ~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~a~~t~~ 136 (456)
..+.++++.+|..... .+.++++.+.+.+.++.++
T Consensus 84 ~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 84 RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 7678899999965554 4888888876554555443
No 278
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=80.93 E-value=16 Score=32.14 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHCCC--CEEEEEecCchh--hHHH-HhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCCcEEEE
Q 012817 35 PVLSYVLEQLELSNI--KDLIVVVEGADA--ALRV-GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVV 109 (456)
Q Consensus 35 pli~~~l~~l~~~gi--~~v~iv~~~~~~--~~~i-~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~ 109 (456)
..+..+|+.+.+.-. .+++|+-+.... .+.+ ..+... ...+.+...+...|.+.++-.+++....+.++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~l 90 (202)
T cd04184 15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ----DPRIKVVFREENGGISAATNSALELATGEFVALL 90 (202)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc----CCCEEEEEcccCCCHHHHHHHHHHhhcCCEEEEE
Confidence 678888888876433 366666443211 1122 222211 1235555555667888888777777766778888
Q ss_pred cCCcccCC-ChhHHHHHH-HhcCce
Q 012817 110 SGDLVSDV-PPGAVTAAH-RRHDAV 132 (456)
Q Consensus 110 ~~D~i~~~-~l~~~l~~~-~~~~a~ 132 (456)
..|..... .+..+++.+ ...+..
T Consensus 91 d~D~~~~~~~l~~~~~~~~~~~~~~ 115 (202)
T cd04184 91 DHDDELAPHALYEVVKALNEHPDAD 115 (202)
T ss_pred CCCCcCChHHHHHHHHHHHhCCCCC
Confidence 88865554 488888876 334443
No 279
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=79.35 E-value=33 Score=32.66 Aligned_cols=101 Identities=15% Similarity=0.030 Sum_probs=61.3
Q ss_pred cccCCc--chHHHHHHHHHHCCC----CEEEEEecCchh-h-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhc
Q 012817 29 LPVANR--PVLSYVLEQLELSNI----KDLIVVVEGADA-A-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHH 100 (456)
Q Consensus 29 lpi~gk--pli~~~l~~l~~~gi----~~v~iv~~~~~~-~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~ 100 (456)
+|.-+. ..|..+|+.+.+... .+|+||=+.... . +.+.++..... ...+.++..+...|.+.+.-.+++.
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~--~~~v~vi~~~~n~G~~~a~N~g~~~ 81 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKY--LPKVKVLRLKKREGLIRARIAGARA 81 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhc--CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 455444 488888988875421 377777543211 1 12222111111 1236666556668888887777777
Q ss_pred CCCCcEEEEcCCcccC-CChhHHHHHHHhcCc
Q 012817 101 LTAKDVLVVSGDLVSD-VPPGAVTAAHRRHDA 131 (456)
Q Consensus 101 l~~~~~lv~~~D~i~~-~~l~~~l~~~~~~~a 131 (456)
...+.++++.+|.... .-|..+++...+...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 7678899999996554 458888888766544
No 280
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=79.17 E-value=6.1 Score=34.83 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=67.7
Q ss_pred ceEEEEe---cCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817 3 FQVVVLA---GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (456)
Q Consensus 3 ~~aiIla---gG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i 79 (456)
|.+||+- ++.-+||.|.-....-+-|+ .-|+-.++..+... +.+|.|++.+.+ +..+.. + .
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpde~----~~~~a~-----~--~ 64 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPDEE----VLVPAT-----K--L 64 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh-cCCceEEcCChH----hhhhcc-----c--c
Confidence 4567764 35667886652222112111 25999999999876 789999987542 222111 1 1
Q ss_pred EEEEccCCcChHHHHHHHHhcCCC-CcEEEEcCC--cccCCChhHHHHHHHhcCceEEE
Q 012817 80 EVATVPEDVGTAGALRAIAHHLTA-KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (456)
Q Consensus 80 ~~~~~~~~~gt~~al~~~~~~l~~-~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~ 135 (456)
++.. + .....++.++++.+.. +.++|+++| ++...+++++++.... +++.+
T Consensus 65 ~vl~-d--~dLN~Ai~aa~~~~~~p~~v~vvmaDLPLl~~~~i~~~~~~~~d--~dvvi 118 (210)
T COG1920 65 EVLA-D--PDLNTAINAALDEIPLPSEVIVVMADLPLLSPEHIERALSAAKD--ADVVI 118 (210)
T ss_pred eeee-c--cchHHHHHHHHhhCCCCcceEEEecccccCCHHHHHHHHHhcCC--CcEEE
Confidence 2322 2 2245677777777653 569999999 6777889988875433 55433
No 281
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=78.40 E-value=9.3 Score=32.42 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=16.7
Q ss_pred EECCCCEECCCcEEcCeEECCCCEECCCcEec
Q 012817 399 VVMNHVTIGDGCSIQGSVICSNAQLQERVALK 430 (456)
Q Consensus 399 ~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~ 430 (456)
+..+.+.|...+.+.+-|=++...|..|+.+.
T Consensus 86 ~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~ 117 (146)
T COG1664 86 LAAERVELYPGGRVIGDITTKEITVEEGAIFE 117 (146)
T ss_pred EEeeEEEEcCCcEEeeeecccEEEEccCCEEE
Confidence 34455555555555555555555555555554
No 282
>PRK11204 N-glycosyltransferase; Provisional
Probab=77.69 E-value=18 Score=36.48 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=60.9
Q ss_pred ccccCCc-chHHHHHHHHHHCCC--CEEEEEecCch-h-hHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCC
Q 012817 28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGAD-A-ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (456)
Q Consensus 28 llpi~gk-pli~~~l~~l~~~gi--~~v~iv~~~~~-~-~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~ 102 (456)
++|.-+. ..|..+++.+.+... -+++|+-+... . .+.++++..+ ..++.++..++..|.+.++..+++...
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~----~~~v~~i~~~~n~Gka~aln~g~~~a~ 134 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQ----IPRLRVIHLAENQGKANALNTGAAAAR 134 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHh----CCcEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4665564 688999998876542 36666654221 1 1223332222 112555544566788899888888777
Q ss_pred CCcEEEEcCCcccCCC-hhHHHHHHHh
Q 012817 103 AKDVLVVSGDLVSDVP-PGAVTAAHRR 128 (456)
Q Consensus 103 ~~~~lv~~~D~i~~~~-l~~~l~~~~~ 128 (456)
.+.++++.+|.+.+.+ +..+++.+.+
T Consensus 135 ~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 135 SEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 7789999999665544 7888877654
No 283
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=77.34 E-value=2.5 Score=42.50 Aligned_cols=38 Identities=29% Similarity=0.547 Sum_probs=31.6
Q ss_pred ceEEEEecCCCCCCcCCCCCCCcccccccCC---cchHHHHHHHH
Q 012817 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN---RPVLSYVLEQL 44 (456)
Q Consensus 3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~g---kpli~~~l~~l 44 (456)
.-++++|||.|+|+ ....||.+.|++- +.++++..+.+
T Consensus 98 ~a~~llaGgqgtRL----g~~~pkg~~~~G~~~~~slf~~qae~i 138 (477)
T KOG2388|consen 98 VAVVLLAGGQGTRL----GSSGPKGCYPIGLPSGKSLFQIQAERI 138 (477)
T ss_pred ceEEEeccCceeee----ccCCCcceeecCCccccchhhhhHHHH
Confidence 45799999999999 7889999999984 56887776665
No 284
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=76.89 E-value=15 Score=33.39 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=57.4
Q ss_pred cccCCc-chHHHHHHHHHHCCC----CEEEEEecCchh--hHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcC
Q 012817 29 LPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADA--ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL 101 (456)
Q Consensus 29 lpi~gk-pli~~~l~~l~~~gi----~~v~iv~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l 101 (456)
+|.-++ +.+..+|+.+.+... -+++|+-+.... .+.++.+... ...+.++. ....|.+.++-.+++..
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~----~~~v~~i~-~~~~~~~~a~N~g~~~a 80 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK----DPRIRLID-NPKRIQSAGLNIGIRNS 80 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc----CCeEEEEe-CCCCCchHHHHHHHHHh
Confidence 444443 577888888876543 366666543221 1223332211 12244443 23356667777777777
Q ss_pred CCCcEEEEcCCcccCC-ChhHHHHHHHhcCceE
Q 012817 102 TAKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV 133 (456)
Q Consensus 102 ~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~a~~ 133 (456)
..+.++++.+|.+... .+..+++.+.+.+..+
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~ 113 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELVEALKRTGADN 113 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCE
Confidence 6677899999965544 4888888766655544
No 285
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=76.47 E-value=21 Score=31.01 Aligned_cols=96 Identities=19% Similarity=0.114 Sum_probs=55.5
Q ss_pred cccCCc-chHHHHHHHHHHCCCC--EEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCCc
Q 012817 29 LPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (456)
Q Consensus 29 lpi~gk-pli~~~l~~l~~~gi~--~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~ 105 (456)
+|.-+. ..|+.+|+.+.+.... +++|+-+... +...+.+.... .. ..+.......|.+.++..+++....+.
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~--d~~~~~~~~~~-~~--~~~~~~~~~~g~~~a~n~~~~~a~~~~ 78 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGST--DGTVDIIKKYE-DK--ITYWISEPDKGIYDAMNKGIALATGDI 78 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCC--ccHHHHHHHhH-hh--cEEEEecCCcCHHHHHHHHHHHcCCCE
Confidence 344343 5788999998765544 5555533211 11222222211 11 223333455788888888888877778
Q ss_pred EEEEcCCc-ccCCChhHHHHHHHhc
Q 012817 106 VLVVSGDL-VSDVPPGAVTAAHRRH 129 (456)
Q Consensus 106 ~lv~~~D~-i~~~~l~~~l~~~~~~ 129 (456)
++++.+|. +.+..+..+++...+.
T Consensus 79 v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 79 IGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred EEEeCCCcccCchHHHHHHHHHHhC
Confidence 89999884 5556688888554433
No 286
>PRK10018 putative glycosyl transferase; Provisional
Probab=75.25 E-value=51 Score=31.30 Aligned_cols=98 Identities=8% Similarity=0.073 Sum_probs=59.6
Q ss_pred cccCC-cchHHHHHHHHHHCCCC--EEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCCc
Q 012817 29 LPVAN-RPVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (456)
Q Consensus 29 lpi~g-kpli~~~l~~l~~~gi~--~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~ 105 (456)
+|.-+ ...|..+|+.+.+.... +++|+-+.....+.+.++..... ...+.+...+...|.+.+.-.+++....+.
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~--~~ri~~i~~~~n~G~~~a~N~gi~~a~g~~ 88 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALN--DPRITYIHNDINSGACAVRNQAIMLAQGEY 88 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcC--CCCEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 44444 35678889888655433 55555432211123444443321 123666655566888888877888777788
Q ss_pred EEEEcCCccc-CCChhHHHHHHHh
Q 012817 106 VLVVSGDLVS-DVPPGAVTAAHRR 128 (456)
Q Consensus 106 ~lv~~~D~i~-~~~l~~~l~~~~~ 128 (456)
++++.+|... +..+..+++...+
T Consensus 89 I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 89 ITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred EEEECCCCCCCccHHHHHHHHHHh
Confidence 9999999544 4458888876554
No 287
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=74.46 E-value=40 Score=32.93 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=61.1
Q ss_pred cccCC-cchHHHHHHHHHHC---------C-CCEEEEEecC-chhh-HHHHhhhhhhccCccceEEEEccCCcChHHHHH
Q 012817 29 LPVAN-RPVLSYVLEQLELS---------N-IKDLIVVVEG-ADAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALR 95 (456)
Q Consensus 29 lpi~g-kpli~~~l~~l~~~---------g-i~~v~iv~~~-~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~ 95 (456)
+|.-+ .+-|..+|+.+.+. . --+++|+-+. .+.. +.++++..+.......+.++..+...|.+.|+.
T Consensus 76 IP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~ 155 (333)
T PTZ00260 76 IPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVR 155 (333)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHH
Confidence 45444 45677777666431 1 3466666542 2222 233444332100112356665566789999999
Q ss_pred HHHhcCCCCcEEEEcCCcccC-CChhHHHHHHHh---cCceEEE
Q 012817 96 AIAHHLTAKDVLVVSGDLVSD-VPPGAVTAAHRR---HDAVVTA 135 (456)
Q Consensus 96 ~~~~~l~~~~~lv~~~D~i~~-~~l~~~l~~~~~---~~a~~t~ 135 (456)
.+++....+.++++.+|...+ .++..+++...+ .+.++.+
T Consensus 156 ~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~ 199 (333)
T PTZ00260 156 IGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVF 199 (333)
T ss_pred HHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEE
Confidence 888776667789999996544 457777776543 4444433
No 288
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=74.34 E-value=28 Score=31.14 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=56.0
Q ss_pred ccccCCc-chHHHHHHHHHHCCC----CEEEEEecCc-hhhHHHHhhhhhhccCccceEEEEccC--CcChHHHHHHHHh
Q 012817 28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGA-DAALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAH 99 (456)
Q Consensus 28 llpi~gk-pli~~~l~~l~~~gi----~~v~iv~~~~-~~~~~i~~~~~~~~~~~~~i~~~~~~~--~~gt~~al~~~~~ 99 (456)
++|..|. ..|..+|+.+..... -+++|+-+.. +....+-++.... ....+.+...+. ..|...++..+++
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~v~~~~~~~~~~~g~~~a~n~g~~ 79 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAK--PNFQLKILNNSRVSISGKKNALTTAIK 79 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhC--CCcceEEeeccCcccchhHHHHHHHHH
Confidence 3555554 578899988865432 3566554322 1111221111111 112234433332 3566677766777
Q ss_pred cCCCCcEEEEcCCcccCC-ChhHHHHHHHhcCc
Q 012817 100 HLTAKDVLVVSGDLVSDV-PPGAVTAAHRRHDA 131 (456)
Q Consensus 100 ~l~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~a 131 (456)
....+.++++.+|.+... -++.+++.+.+.+.
T Consensus 80 ~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 80 AAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred HhcCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 666678999999965544 47788876655443
No 289
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=73.37 E-value=38 Score=30.59 Aligned_cols=95 Identities=21% Similarity=0.192 Sum_probs=57.6
Q ss_pred cccCC-c-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCCcE
Q 012817 29 LPVAN-R-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDV 106 (456)
Q Consensus 29 lpi~g-k-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~ 106 (456)
+|.-| . +.|..+|+.+.+....+++|+.+.... .....+.... ....+.+.. .+..|...++..+++....+.+
T Consensus 6 Ip~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d--~~~~~l~~~~-~~~~~~v~~-~~~~g~~~a~n~g~~~a~~d~v 81 (235)
T cd06434 6 IPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDE--PYLSILSQTV-KYGGIFVIT-VPHPGKRRALAEGIRHVTTDIV 81 (235)
T ss_pred EeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCCh--HHHHHHHhhc-cCCcEEEEe-cCCCChHHHHHHHHHHhCCCEE
Confidence 44444 3 689999999977655677777653321 2222221111 111233332 3456777888777777766789
Q ss_pred EEEcCCcccCCC-hhHHHHHHH
Q 012817 107 LVVSGDLVSDVP-PGAVTAAHR 127 (456)
Q Consensus 107 lv~~~D~i~~~~-l~~~l~~~~ 127 (456)
+++.+|.....+ ++.+++.+.
T Consensus 82 ~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 82 VLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred EEECCCceeChhHHHHHHHhcc
Confidence 999999665554 778887765
No 290
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=71.93 E-value=61 Score=29.27 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=53.1
Q ss_pred cccCC-cchHHHHHHHHHHCCC----CEEEEEecCchhh-HHHHhhhhhhccCccceEEEEccCCcC-hHHHHHHHHhcC
Q 012817 29 LPVAN-RPVLSYVLEQLELSNI----KDLIVVVEGADAA-LRVGGWISAAYVDRLHVEVATVPEDVG-TAGALRAIAHHL 101 (456)
Q Consensus 29 lpi~g-kpli~~~l~~l~~~gi----~~v~iv~~~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~g-t~~al~~~~~~l 101 (456)
+|.-| ...|..+|+.+.+... -+|+|+-+..+.. +.++++..+.......+.+....+..| .+.++-.+++..
T Consensus 7 Ip~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a 86 (232)
T cd06437 7 LPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVA 86 (232)
T ss_pred EecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhC
Confidence 44444 3578889999876432 1444443322222 234443333211122344443344455 466776777777
Q ss_pred CCCcEEEEcCCcccCCC-hhHHHHH
Q 012817 102 TAKDVLVVSGDLVSDVP-PGAVTAA 125 (456)
Q Consensus 102 ~~~~~lv~~~D~i~~~~-l~~~l~~ 125 (456)
..+.++++.+|.+...+ ++.+...
T Consensus 87 ~~~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 87 KGEYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred CCCEEEEEcCCCCCChHHHHHhhhh
Confidence 77889999999766554 6664443
No 291
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=71.84 E-value=29 Score=35.43 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=62.0
Q ss_pred cccccCCc-chHHHHHHHHHHCC--CCEEEEEecCch--hhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcC
Q 012817 27 ALLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGAD--AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL 101 (456)
Q Consensus 27 ~llpi~gk-pli~~~l~~l~~~g--i~~v~iv~~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l 101 (456)
-++|..|. ..|..+++.+.+.. --+++|+.+... ..+.++++..+. ..+.++..+...|-+.++..+.+..
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~----~~v~vv~~~~n~Gka~AlN~gl~~a 154 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAED----PRLRVIHLAHNQGKAIALRMGAAAA 154 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhC----CCEEEEEeCCCCCHHHHHHHHHHhC
Confidence 45777675 56888998887643 236666654222 112333333221 1355555456678888888887777
Q ss_pred CCCcEEEEcCCcccCCC-hhHHHHHHHh
Q 012817 102 TAKDVLVVSGDLVSDVP-PGAVTAAHRR 128 (456)
Q Consensus 102 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 128 (456)
..|.++++.+|.+.+.+ +..+++.+.+
T Consensus 155 ~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 155 RSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred CCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 66789999999766554 7777776654
No 292
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=71.77 E-value=42 Score=34.23 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=59.1
Q ss_pred ccccCC-cchHHHHHHHHHHCCC--C--EEEEEecCc-hhhHHH-HhhhhhhccCccceEEEEccCCcChHHHHHHHHhc
Q 012817 28 LLPVAN-RPVLSYVLEQLELSNI--K--DLIVVVEGA-DAALRV-GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHH 100 (456)
Q Consensus 28 llpi~g-kpli~~~l~~l~~~gi--~--~v~iv~~~~-~~~~~i-~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~ 100 (456)
++|.-| ...|..+++.+.+... + +|+|+-+.. +....+ ++ ..+.. ..+.+...+...|-+.|+-.+++.
T Consensus 54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~-~~~~~---~~v~v~~~~~~~Gka~AlN~gl~~ 129 (439)
T TIGR03111 54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCR-AQNEF---PGLSLRYMNSDQGKAKALNAAIYN 129 (439)
T ss_pred EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHH-HHHhC---CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 356555 3688999999876543 2 455554322 212222 22 21211 124444445567888999888888
Q ss_pred CCCCcEEEEcCCcccCCC-hhHHHHHHHh
Q 012817 101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRR 128 (456)
Q Consensus 101 l~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 128 (456)
...+.++++.+|.+.+.+ ++++++.+.+
T Consensus 130 s~g~~v~~~DaD~~~~~d~L~~l~~~f~~ 158 (439)
T TIGR03111 130 SIGKYIIHIDSDGKLHKDAIKNMVTRFEN 158 (439)
T ss_pred ccCCEEEEECCCCCcChHHHHHHHHHHHh
Confidence 777789999999766554 7888877754
No 293
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=71.47 E-value=41 Score=30.83 Aligned_cols=105 Identities=17% Similarity=0.181 Sum_probs=59.6
Q ss_pred cccCCc-chHHHHHHHHHHC----CCCEEEEEecCc-hhh-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcC
Q 012817 29 LPVANR-PVLSYVLEQLELS----NIKDLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL 101 (456)
Q Consensus 29 lpi~gk-pli~~~l~~l~~~----gi~~v~iv~~~~-~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l 101 (456)
+|.-+. .-|..+++.+.+. .--+++|+-+.. +.. +.++++... +. ...+.+...+...|.+.++..+++..
T Consensus 15 Ip~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~-~~-~~~v~~~~~~~n~G~~~a~n~g~~~a 92 (243)
T PLN02726 15 VPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKV-YG-EDRILLRPRPGKLGLGTAYIHGLKHA 92 (243)
T ss_pred EccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHh-cC-CCcEEEEecCCCCCHHHHHHHHHHHc
Confidence 444443 4566666666432 123566664322 111 223332211 11 11244444455678888888888777
Q ss_pred CCCcEEEEcCCcccCC-ChhHHHHHHHhcCceEEE
Q 012817 102 TAKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVTA 135 (456)
Q Consensus 102 ~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~a~~t~ 135 (456)
..+.++++.+|...+. .+..+++...+.++++..
T Consensus 93 ~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 127 (243)
T PLN02726 93 SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVT 127 (243)
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence 6678999999965544 588888877666666543
No 294
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=69.69 E-value=54 Score=28.19 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=38.1
Q ss_pred eEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCC-ChhHHHHHHHhcCceE
Q 012817 79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV 133 (456)
Q Consensus 79 i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~a~~ 133 (456)
+.+.......|.+.++..+++....+.++++.+|..... .+..+++. .+.+.++
T Consensus 57 i~~i~~~~n~G~~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~ 111 (181)
T cd04187 57 VKVIRLSRNFGQQAALLAGLDHARGDAVITMDADLQDPPELIPEMLAK-WEEGYDV 111 (181)
T ss_pred EEEEEecCCCCcHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcE
Confidence 555544556788999988888777778999999965544 47778876 3444444
No 295
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=69.16 E-value=50 Score=29.84 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=56.9
Q ss_pred ccccCCc-c-hHHHHHHHHHHCCC--CEEEEEecCchh-h--HHHHhhhhhhccCccceEEEEccCCcCh-HHHHHHHHh
Q 012817 28 LLPVANR-P-VLSYVLEQLELSNI--KDLIVVVEGADA-A--LRVGGWISAAYVDRLHVEVATVPEDVGT-AGALRAIAH 99 (456)
Q Consensus 28 llpi~gk-p-li~~~l~~l~~~gi--~~v~iv~~~~~~-~--~~i~~~~~~~~~~~~~i~~~~~~~~~gt-~~al~~~~~ 99 (456)
++|.-+. | +|..+|+.+.+... -+++|+-+.... . +.++++.... ..++.++...+..|. ++++-.+++
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~---~~~i~~i~~~~~~G~~~~a~n~g~~ 79 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQL---GERFRFFHVEPLPGAKAGALNYALE 79 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHh---CCcEEEEEcCCCCCCchHHHHHHHH
Confidence 3566665 3 78999999987643 466666543221 1 1233433221 112444444444553 677777777
Q ss_pred cCC--CCcEEEEcCCcccC-CChhHHHHHHHh
Q 012817 100 HLT--AKDVLVVSGDLVSD-VPPGAVTAAHRR 128 (456)
Q Consensus 100 ~l~--~~~~lv~~~D~i~~-~~l~~~l~~~~~ 128 (456)
... .+.++++..|.+.+ ..|..++....+
T Consensus 80 ~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (236)
T cd06435 80 RTAPDAEIIAVIDADYQVEPDWLKRLVPIFDD 111 (236)
T ss_pred hcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcC
Confidence 654 35689999995544 458888877643
No 296
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=68.68 E-value=83 Score=27.92 Aligned_cols=105 Identities=13% Similarity=0.155 Sum_probs=62.7
Q ss_pred CcchHHHHHHHH-HHCCCCEEEEEecC--chhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCCcEEEE
Q 012817 33 NRPVLSYVLEQL-ELSNIKDLIVVVEG--ADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVV 109 (456)
Q Consensus 33 gkpli~~~l~~l-~~~gi~~v~iv~~~--~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~ 109 (456)
|-|++-|.+... .+.+.+--+|++.+ ++....+.+.++..+.. .++.+..-...+|.+.|...++.+...+.++++
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~-d~i~l~pR~~klGLgtAy~hgl~~a~g~fiviM 95 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGE-DNILLKPRTKKLGLGTAYIHGLKHATGDFIVIM 95 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCC-CcEEEEeccCcccchHHHHhhhhhccCCeEEEE
Confidence 346777877665 45666544444432 22122222223332221 124444344557888888888888876778888
Q ss_pred cCCccc-CCChhHHHHHHHhcCceEEEEEe
Q 012817 110 SGDLVS-DVPPGAVTAAHRRHDAVVTAMIC 138 (456)
Q Consensus 110 ~~D~i~-~~~l~~~l~~~~~~~a~~t~~~~ 138 (456)
.+|+-- +.-+.++++..++.+.+++..+.
T Consensus 96 DaDlsHhPk~ipe~i~lq~~~~~div~GTR 125 (238)
T KOG2978|consen 96 DADLSHHPKFIPEFIRLQKEGNYDIVLGTR 125 (238)
T ss_pred eCccCCCchhHHHHHHHhhccCcceeeeee
Confidence 999544 34588899888877777765543
No 297
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=68.63 E-value=41 Score=29.62 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=57.1
Q ss_pred ccccCCc-chHHHHHHHHHHCCC--CEEEEEecCc-h-hhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCC
Q 012817 28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGA-D-AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (456)
Q Consensus 28 llpi~gk-pli~~~l~~l~~~gi--~~v~iv~~~~-~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~ 102 (456)
++|.-++ ..|..+|+.+.+... -+++|+-+.. + ..+.++++.... ...+.+...+...|.+.++..++....
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~---~~~~~~~~~~~~~G~~~~~n~g~~~~~ 79 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKD---PFIIILIRNGKNLGVARNFESLLQAAD 79 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcC---CceEEEEeCCCCccHHHHHHHHHHhCC
Confidence 3455554 478888888876532 3566664422 1 112344433221 112344444556788888888877776
Q ss_pred CCcEEEEcCCccc-CCChhHHHHHHH
Q 012817 103 AKDVLVVSGDLVS-DVPPGAVTAAHR 127 (456)
Q Consensus 103 ~~~~lv~~~D~i~-~~~l~~~l~~~~ 127 (456)
.+.++++..|.+. +..+..+++...
T Consensus 80 g~~v~~ld~Dd~~~~~~l~~~~~~~~ 105 (214)
T cd04196 80 GDYVFFCDQDDIWLPDKLERLLKAFL 105 (214)
T ss_pred CCEEEEECCCcccChhHHHHHHHHHh
Confidence 6788999988544 445888887733
No 298
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=66.39 E-value=98 Score=27.69 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=56.2
Q ss_pred ccccCCc--chHHHHHHHHHHCCCC----EEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcC-hHHHHHHHHhc
Q 012817 28 LLPVANR--PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVG-TAGALRAIAHH 100 (456)
Q Consensus 28 llpi~gk--pli~~~l~~l~~~gi~----~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~g-t~~al~~~~~~ 100 (456)
.+|.-+. .++..+|+.+...... +++|+-+... +...+.+.... ....+.+...+...+ .++++..+++.
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~~~~ 82 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRR--PELRALAAELG-VEYGYRYLTRPDNRHAKAGNLNNALAH 82 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCc--hhHHHHHHHhh-cccCceEEEeCCCCCCcHHHHHHHHHh
Confidence 3565564 3788899999775443 5666644321 22222232221 111334444444444 45666677777
Q ss_pred CCCCcEEEEcCCcccCC-ChhHHHHHHHh
Q 012817 101 LTAKDVLVVSGDLVSDV-PPGAVTAAHRR 128 (456)
Q Consensus 101 l~~~~~lv~~~D~i~~~-~l~~~l~~~~~ 128 (456)
...+.++++..|.+.+. .+..+++...+
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhc
Confidence 66678899999965554 47778877655
No 299
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=65.19 E-value=59 Score=29.31 Aligned_cols=85 Identities=19% Similarity=0.141 Sum_probs=50.8
Q ss_pred CCc-chHHHHHHHHHHCCCCEEEEEecCchhh-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCC---CCcE
Q 012817 32 ANR-PVLSYVLEQLELSNIKDLIVVVEGADAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT---AKDV 106 (456)
Q Consensus 32 ~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~---~~~~ 106 (456)
.+. ..|..+|+.+.+. ..+++|+=+..+.. ....++ ...++.++..+...|.+.+.-.+++... .+.+
T Consensus 7 n~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~------~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v 79 (237)
T cd02526 7 NPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL------NSEKIELIHLGENLGIAKALNIGIKAALENGADYV 79 (237)
T ss_pred cCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc------cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEE
Confidence 445 7888889888765 55666664322211 111111 1223556655566787777776766543 3779
Q ss_pred EEEcCCcccCC-ChhHHH
Q 012817 107 LVVSGDLVSDV-PPGAVT 123 (456)
Q Consensus 107 lv~~~D~i~~~-~l~~~l 123 (456)
+++.+|...+. .+..++
T Consensus 80 ~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 80 LLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred EEECCCCCcCHhHHHHHH
Confidence 99999966554 466664
No 300
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=64.42 E-value=25 Score=29.79 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=37.1
Q ss_pred EeeeEECCC-CEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcC
Q 012817 378 VKRSVIGRH-CRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG 448 (456)
Q Consensus 378 i~~s~Ig~~-~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~ 448 (456)
+...+..++ +.|++..+|...+-.+...|. +.+.++....+.+.|..++.+.+-+=++.-.|..|+.+.|
T Consensus 48 ~~G~v~s~~~iiv~~~g~V~gei~a~~~iv~-G~v~Gni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G 118 (146)
T COG1664 48 FEGDVHSDGGIVVGESGRVEGEIEAEHLIVE-GKVEGNILAAERVELYPGGRVIGDITTKEITVEEGAIFEG 118 (146)
T ss_pred EEEEEEeCCCEEECCccEEEEEEEeCEEEEe-eEEEEEEEEeeEEEEcCCcEEeeeecccEEEEccCCEEEe
Confidence 333444444 666666666655544444443 3444455556666677666665443344444444444444
No 301
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=64.12 E-value=90 Score=30.94 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=59.1
Q ss_pred ccccCCc-chHHHHHHHHHHCCC--CEEEEEecCchh--hHHHHhhhhhhccCccceEEEEccCCcC---hHHHHHHHHh
Q 012817 28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADA--ALRVGGWISAAYVDRLHVEVATVPEDVG---TAGALRAIAH 99 (456)
Q Consensus 28 llpi~gk-pli~~~l~~l~~~gi--~~v~iv~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~g---t~~al~~~~~ 99 (456)
++|..|. +.|..+|+.+.+... -||+++.+..++ .+.++++..+ + ...+++++..+++.| ...++.++.+
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~-~-p~~~i~~v~~~~~~G~~~K~~~l~~~~~ 123 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRAD-F-PDADIDLVIDARRHGPNRKVSNLINMLP 123 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHh-C-CCCceEEEECCCCCCCChHHHHHHHHHH
Confidence 5777664 789999999876543 466665543322 1233443322 1 123355554444433 3355655666
Q ss_pred cCCCCcEEEEcCCcccCCC-hhHHHHHHHhcC
Q 012817 100 HLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHD 130 (456)
Q Consensus 100 ~l~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 130 (456)
....|.++++.+|...+.+ ++.++..+.+.+
T Consensus 124 ~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 124 HARHDILVIADSDISVGPDYLRQVVAPLADPD 155 (373)
T ss_pred hccCCEEEEECCCCCcChhHHHHHHHHhcCCC
Confidence 6666789999999665554 777777664433
No 302
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=64.02 E-value=58 Score=31.69 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=39.4
Q ss_pred eEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCccc-CCChhHHHHHHHhcCceEE
Q 012817 79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVT 134 (456)
Q Consensus 79 i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~a~~t 134 (456)
+..+......|.+.|+..++++...+.++++.+|.-. +..+.++++...+ +.++.
T Consensus 67 v~~i~~~~n~G~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~-~~DvV 122 (325)
T PRK10714 67 IVAILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADE-GYDVV 122 (325)
T ss_pred EEEEEeCCCCCHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHh-hCCEE
Confidence 3333345567888999988888776789999999554 4568889887753 46643
No 303
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=58.66 E-value=1.4e+02 Score=29.72 Aligned_cols=105 Identities=15% Similarity=0.093 Sum_probs=59.3
Q ss_pred ccccCC-cchHHHHHHHHHHCCC---CEEEEEecCc-hhh-HHHHhhhhhhccCccceEEEEccC-C---cChHHHHHHH
Q 012817 28 LLPVAN-RPVLSYVLEQLELSNI---KDLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVPE-D---VGTAGALRAI 97 (456)
Q Consensus 28 llpi~g-kpli~~~l~~l~~~gi---~~v~iv~~~~-~~~-~~i~~~~~~~~~~~~~i~~~~~~~-~---~gt~~al~~~ 97 (456)
++|.-| .+.|..+|+.+.+... -+++|+-+.. +.. +.++++..+. .....+.++..++ + .|...++..+
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~-~~~~~i~vi~~~~~~~g~~Gk~~A~n~g 123 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAY-GRGDRLTVVSGQPLPPGWSGKLWAVSQG 123 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhc-CCCCcEEEecCCCCCCCCcchHHHHHHH
Confidence 455555 4789999999976532 3666665422 212 2334333221 1111244443221 1 3555677666
Q ss_pred HhcCC-----CCcEEEEcCCcccCC-ChhHHHHHHHhcCceE
Q 012817 98 AHHLT-----AKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV 133 (456)
Q Consensus 98 ~~~l~-----~~~~lv~~~D~i~~~-~l~~~l~~~~~~~a~~ 133 (456)
.+... .+.++++.+|...+. .+.++++...+.+.++
T Consensus 124 ~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 124 IAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 65544 567999999966544 4788888877665543
No 304
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=58.01 E-value=23 Score=27.76 Aligned_cols=29 Identities=10% Similarity=0.308 Sum_probs=14.6
Q ss_pred CCCEECCCcEEcCeEECCCCEECCCcEec
Q 012817 402 NHVTIGDGCSIQGSVICSNAQLQERVALK 430 (456)
Q Consensus 402 ~~~~ig~~~~i~~~ii~~~~~I~~~~~i~ 430 (456)
+.+.|...+.+.+.+-.+...|..++.+.
T Consensus 68 ~~v~i~~~~~v~G~i~~~~l~v~~ga~i~ 96 (101)
T PF04519_consen 68 GKVEIYGTARVEGDITAGKLEVEGGASIN 96 (101)
T ss_pred ceEEEeCCEEEEEEEEECEEEEeCCCEEE
Confidence 34445555555554544445555555443
No 305
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=55.53 E-value=1.4e+02 Score=25.79 Aligned_cols=96 Identities=23% Similarity=0.232 Sum_probs=52.7
Q ss_pred ccccCCc-chHHHHHHHHHHCCC----CEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcC-
Q 012817 28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL- 101 (456)
Q Consensus 28 llpi~gk-pli~~~l~~l~~~gi----~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l- 101 (456)
++|.-+. ..|..+|+.+.+... .+++|+..... +...+..... ...+.........|.+.++..+++..
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~--D~t~~~~~~~---~~~~~~~~~~~~~gk~~aln~g~~~a~ 76 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT--DDTAQVARAA---GATVLERHDPERRGKGYALDFGFRHLL 76 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC--chHHHHHHHc---CCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 3555553 578888888876432 35666654321 1222222221 11111111233467778887776544
Q ss_pred ----CCCcEEEEcCCcccCCC-hhHHHHHHHh
Q 012817 102 ----TAKDVLVVSGDLVSDVP-PGAVTAAHRR 128 (456)
Q Consensus 102 ----~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 128 (456)
..+.++++.+|.....+ +..+++.+.+
T Consensus 77 ~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 77 NLADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred hcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 24568999999666554 7777776654
No 306
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=55.18 E-value=86 Score=27.42 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=49.8
Q ss_pred cchHHHHHHHHHHCCC--CEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhc---CCCCcEEE
Q 012817 34 RPVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHH---LTAKDVLV 108 (456)
Q Consensus 34 kpli~~~l~~l~~~gi--~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~---l~~~~~lv 108 (456)
...|..+|+.+.+... .+++|+-+... +...+.+.+. ....++.+...+...|.+.++-.+++. ...+.+++
T Consensus 9 ~~~l~~~l~sl~~q~~~~~eiiivD~~s~--d~t~~~~~~~-~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ 85 (202)
T cd04185 9 LDLLKECLDALLAQTRPPDHIIVIDNAST--DGTAEWLTSL-GDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDWIWL 85 (202)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEECCCC--cchHHHHHHh-cCCCceEEEECccccchhhHHHHHHHHHhccCCCEEEE
Confidence 3578888999876532 36666644221 1222223222 112224555555566766665544433 23456888
Q ss_pred EcCCcccCCC-hhHHHHHHH
Q 012817 109 VSGDLVSDVP-PGAVTAAHR 127 (456)
Q Consensus 109 ~~~D~i~~~~-l~~~l~~~~ 127 (456)
+..|.+.+.+ ++.+++...
T Consensus 86 ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 86 MDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred eCCCCCcChHHHHHHHHHHh
Confidence 8888666544 666666655
No 307
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=54.92 E-value=96 Score=27.48 Aligned_cols=95 Identities=22% Similarity=0.163 Sum_probs=53.3
Q ss_pred ccccCCc-chHHHHHHHHHHCC--CCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCC
Q 012817 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (456)
Q Consensus 28 llpi~gk-pli~~~l~~l~~~g--i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~ 104 (456)
++|.-+. +.|..+|+.+.+.- ..+++|+-+... +...+.+.+ ..+.+. ....|.+.++-.+++....+
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~--d~~~~~~~~-----~~~~~~--~~~~g~~~a~n~g~~~a~~~ 74 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGST--DGTVAIARS-----AGVVVI--SSPKGRARQMNAGAAAARGD 74 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCC--ccHHHHHhc-----CCeEEE--eCCcCHHHHHHHHHHhccCC
Confidence 3455554 47888888886543 346666643221 112222222 123333 34466677766677766667
Q ss_pred cEEEEcCCcccCC-ChhHHHHHHHhcCc
Q 012817 105 DVLVVSGDLVSDV-PPGAVTAAHRRHDA 131 (456)
Q Consensus 105 ~~lv~~~D~i~~~-~l~~~l~~~~~~~a 131 (456)
.++++..|..... .++.++......+.
T Consensus 75 ~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 102 (221)
T cd02522 75 WLLFLHADTRLPPDWDAAIIETLRADGA 102 (221)
T ss_pred EEEEEcCCCCCChhHHHHHHHHhhcCCc
Confidence 8899999965544 46666665554443
No 308
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=54.67 E-value=1e+02 Score=28.88 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcC---CCCcEEEEcC
Q 012817 35 PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---TAKDVLVVSG 111 (456)
Q Consensus 35 pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l---~~~~~lv~~~ 111 (456)
..|..+++.+.+. ..+++|+=+.....+.+...... ...+.++..++..|-+.+.-.+++.. ..+.++++..
T Consensus 8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~ 82 (281)
T TIGR01556 8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQ 82 (281)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECC
Confidence 4677778777654 45666664432111123322221 12366666666788888777666544 3467899999
Q ss_pred CcccCC-ChhHHHHHHHhcC
Q 012817 112 DLVSDV-PPGAVTAAHRRHD 130 (456)
Q Consensus 112 D~i~~~-~l~~~l~~~~~~~ 130 (456)
|.+... .+..+++...+.+
T Consensus 83 D~~~~~~~l~~l~~~~~~~~ 102 (281)
T TIGR01556 83 DSRPGNAFLAAQWKLLSAEN 102 (281)
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 966544 4777777665543
No 309
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=54.01 E-value=1.5e+02 Score=25.87 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=51.3
Q ss_pred cccCC-cchHHHHHHHHHHCC--CCEEEEEecCchh-h-HHHHhhhhhhccCccceEEEEccCCcCh---HHHHHHHHhc
Q 012817 29 LPVAN-RPVLSYVLEQLELSN--IKDLIVVVEGADA-A-LRVGGWISAAYVDRLHVEVATVPEDVGT---AGALRAIAHH 100 (456)
Q Consensus 29 lpi~g-kpli~~~l~~l~~~g--i~~v~iv~~~~~~-~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt---~~al~~~~~~ 100 (456)
+|.-+ .+-|..+|+.+.+.. --+++|+.+.... . +.++++.... ....+.+...+...|. +.++..+++.
T Consensus 7 ip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~n~g~~~ 84 (196)
T cd02520 7 KPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKY--PNVDARLLIGGEKVGINPKVNNLIKGYEE 84 (196)
T ss_pred EecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHC--CCCcEEEEecCCcCCCCHhHHHHHHHHHh
Confidence 45544 346778888886532 2466666543221 1 2233333221 1223445444333332 3455556666
Q ss_pred CCCCcEEEEcCCcccCC-ChhHHHHHH
Q 012817 101 LTAKDVLVVSGDLVSDV-PPGAVTAAH 126 (456)
Q Consensus 101 l~~~~~lv~~~D~i~~~-~l~~~l~~~ 126 (456)
...+.++++.+|...+. -+..+++..
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHh
Confidence 66677899999965444 477777664
No 310
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=52.96 E-value=1.1e+02 Score=27.93 Aligned_cols=97 Identities=19% Similarity=0.128 Sum_probs=59.5
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 84 (456)
.+++|-|.-..| ....| =+--.++|..++..+... .++-|++...++.+ .....|..-..++.+...
T Consensus 91 illlCTG~F~~l----~~~~~----lleP~ril~~lV~al~~~--~~vGVivP~~eQ~~---~~~~kW~~l~~~~~~a~a 157 (221)
T PF07302_consen 91 ILLLCTGEFPGL----TARNP----LLEPDRILPPLVAALVGG--HQVGVIVPLPEQIA---QQAEKWQPLGNPVVVAAA 157 (221)
T ss_pred EEEeccCCCCCC----CCCcc----eeehHHhHHHHHHHhcCC--CeEEEEecCHHHHH---HHHHHHHhcCCCeEEEEe
Confidence 467787776655 33333 223456777777777544 78999998654433 222333222234556555
Q ss_pred cCCcChHHHHHHHHhcCC--CCcEEEEcCCcc
Q 012817 85 PEDVGTAGALRAIAHHLT--AKDVLVVSGDLV 114 (456)
Q Consensus 85 ~~~~gt~~al~~~~~~l~--~~~~lv~~~D~i 114 (456)
+.+.++.+.+..|.+.+. .-+++++.|=-+
T Consensus 158 sPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGY 189 (221)
T PF07302_consen 158 SPYEGDEEELAAAARELAEQGADLIVLDCMGY 189 (221)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 555688888888877665 457999998544
No 311
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=52.61 E-value=1.1e+02 Score=26.12 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=51.2
Q ss_pred cccCCc-chHHHHHHHHHHCC--CCEEEEEecCchh-h-HHHHhhhhhhccCccceEEEEccC-CcChHHHHHHHHhcCC
Q 012817 29 LPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADA-A-LRVGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHLT 102 (456)
Q Consensus 29 lpi~gk-pli~~~l~~l~~~g--i~~v~iv~~~~~~-~-~~i~~~~~~~~~~~~~i~~~~~~~-~~gt~~al~~~~~~l~ 102 (456)
+|.-++ ..+..+|+.+.+.. ..+++|+-+.... . +.++++... ...+........ ..+.+.++-.+++...
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~g~~~a~ 79 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQ---FPIPIKHVWQEDEGFRKAKIRNKAIAAAK 79 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhh---cCCceEEEEcCCcchhHHHHHHHHHHHhc
Confidence 454444 47888999987642 3466666443221 1 122222211 011222222222 2455666666677666
Q ss_pred CCcEEEEcCCcccCCC-hhHHHHHH
Q 012817 103 AKDVLVVSGDLVSDVP-PGAVTAAH 126 (456)
Q Consensus 103 ~~~~lv~~~D~i~~~~-l~~~l~~~ 126 (456)
.+.++++.+|.+...+ +..+++.+
T Consensus 80 g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 80 GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 6789999999665544 67777655
No 312
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=51.46 E-value=53 Score=29.45 Aligned_cols=103 Identities=25% Similarity=0.263 Sum_probs=51.9
Q ss_pred ccccCCc-chHHHHHHHHHHC--CCCEEEEEecCchh--hHHHHhhhhhhccCccceEEEEccCCc---ChHHHHHHHHh
Q 012817 28 LLPVANR-PVLSYVLEQLELS--NIKDLIVVVEGADA--ALRVGGWISAAYVDRLHVEVATVPEDV---GTAGALRAIAH 99 (456)
Q Consensus 28 llpi~gk-pli~~~l~~l~~~--gi~~v~iv~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~---gt~~al~~~~~ 99 (456)
++|.-+. +.|..+|+.+... .--+++|+.+.... .+.++++..... ...+.++..+... +...++..+++
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~--~~~v~vi~~~~~~g~~~k~~a~n~~~~ 83 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYP--RVRVRVIRRPRNPGPGGKARALNEALA 83 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTG--G-GEEEEE----HHHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcC--CCceEEeecCCCCCcchHHHHHHHHHH
Confidence 4666665 6888889888653 23566666642221 122333332221 2235555444323 34577777777
Q ss_pred cCCCCcEEEEcCCcccCCC-hhHHHHHHHhcCce
Q 012817 100 HLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAV 132 (456)
Q Consensus 100 ~l~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~a~ 132 (456)
....+.++++..|.+.+.+ +..+++.+...+..
T Consensus 84 ~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~ 117 (228)
T PF13641_consen 84 AARGDYILFLDDDTVLDPDWLERLLAAFADPGVG 117 (228)
T ss_dssp H---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--
T ss_pred hcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCC
Confidence 7777789999999665544 77888877444333
No 313
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=50.93 E-value=1.8e+02 Score=32.50 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=61.3
Q ss_pred ccccCCcc--hHHHHHHHHHHCC--CC--EEEEEecCchhhHHHHhhhhhhccCccceEEEEccCC-cChHHHHHHHHhc
Q 012817 28 LLPVANRP--VLSYVLEQLELSN--IK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPED-VGTAGALRAIAHH 100 (456)
Q Consensus 28 llpi~gkp--li~~~l~~l~~~g--i~--~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~gt~~al~~~~~~ 100 (456)
++|.-|.+ ++..++..+.+.. -+ +|+|+-+.. .+...+...+ .++.++..++. .+.++++-.+++.
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS--~D~t~~la~~-----~~v~yI~R~~n~~gKAGnLN~aL~~ 337 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGG--REEFRQFAQE-----VGVKYIARPTHEHAKAGNINNALKY 337 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCC--ChHHHHHHHH-----CCcEEEEeCCCCcchHHHHHHHHHh
Confidence 46777876 6778888775532 12 566664322 2344444433 24666554443 4567888888888
Q ss_pred CCCCcEEEEcCCcccCCC-hhHHHHHHHhcCceEEEE
Q 012817 101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM 136 (456)
Q Consensus 101 l~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~a~~t~~ 136 (456)
...|.++++.+|.+...+ ++.++..+.+ +..+.++
T Consensus 338 a~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglV 373 (852)
T PRK11498 338 AKGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMM 373 (852)
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEE
Confidence 777889999999876655 5666665544 3344443
No 314
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=48.74 E-value=1.7e+02 Score=27.55 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=27.2
Q ss_pred cChHHHHHHHHhcCCCCcEEEEcCCcccCCC-hhHHHH
Q 012817 88 VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTA 124 (456)
Q Consensus 88 ~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~-l~~~l~ 124 (456)
.+.+.+.=.+.+....+.++++.+|.+...+ +..+++
T Consensus 74 f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 74 FSRAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred cCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 4777766566777777789999999776554 777777
No 315
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=47.48 E-value=1.5e+02 Score=29.67 Aligned_cols=102 Identities=21% Similarity=0.227 Sum_probs=63.6
Q ss_pred ccccCCc-c-hHHHHHHHHHHCCCC--EEEEEecCchh--hHHHHhhhhhhccCccceEEEEc-cCCcChHHHHHHHHhc
Q 012817 28 LLPVANR-P-VLSYVLEQLELSNIK--DLIVVVEGADA--ALRVGGWISAAYVDRLHVEVATV-PEDVGTAGALRAIAHH 100 (456)
Q Consensus 28 llpi~gk-p-li~~~l~~l~~~gi~--~v~iv~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~-~~~~gt~~al~~~~~~ 100 (456)
++|.-|. + .++.+++.+.+.... +++++.....+ .+.+.++.... .. ...+... ....|.+.++..++..
T Consensus 59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~-~~--~~~~~~~~~~~~gK~~al~~~l~~ 135 (439)
T COG1215 59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEY-GP--NFRVIYPEKKNGGKAGALNNGLKR 135 (439)
T ss_pred EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhc-Cc--ceEEEeccccCccchHHHHHHHhh
Confidence 4565564 5 899999999887643 67777652221 12233332221 01 1222222 3456778899888888
Q ss_pred CCCCcEEEEcCCcccCCC-hhHHHHHHHhcCce
Q 012817 101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAV 132 (456)
Q Consensus 101 l~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~a~ 132 (456)
...+.++++.+|.+...| +.+++..+......
T Consensus 136 ~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 136 AKGDVVVILDADTVPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred cCCCEEEEEcCCCCCChhHHHHHHhhhcCCCee
Confidence 776779999999776655 78888877665443
No 316
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=46.56 E-value=2.5e+02 Score=30.76 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=59.3
Q ss_pred ccccCCcc--hHHHHHHHHHHCCC----CEEEEEecCc-h---------------hhHHHHhhhhhhccCccceEEEEcc
Q 012817 28 LLPVANRP--VLSYVLEQLELSNI----KDLIVVVEGA-D---------------AALRVGGWISAAYVDRLHVEVATVP 85 (456)
Q Consensus 28 llpi~gkp--li~~~l~~l~~~gi----~~v~iv~~~~-~---------------~~~~i~~~~~~~~~~~~~i~~~~~~ 85 (456)
++|.-|.+ ++..+++.+.+..- -+|+|+-+.. + ..+.++++..+ .++.+...+
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~-----~~v~yi~r~ 210 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRK-----LGVNYITRP 210 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHH-----cCcEEEECC
Confidence 57877875 67788988876432 2566664321 0 01223333222 346666544
Q ss_pred CC-cChHHHHHHHHhcCCCCcEEEEcCCcccCCC-hhHHHHHHHh
Q 012817 86 ED-VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHRR 128 (456)
Q Consensus 86 ~~-~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 128 (456)
+. .+-++++-.++++.+.+.++++.+|.+...+ +++++..+.+
T Consensus 211 ~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~ 255 (713)
T TIGR03030 211 RNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVE 255 (713)
T ss_pred CCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHh
Confidence 44 3557888888888777889999999776655 6777776644
No 317
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=44.43 E-value=2.7e+02 Score=25.95 Aligned_cols=106 Identities=10% Similarity=0.072 Sum_probs=56.1
Q ss_pred ccccCCcc--hHHHHHHHHHH----CC---CCEEEEEecCchhhH-HH------HhhhhhhccCccceEEEEccCCcCh-
Q 012817 28 LLPVANRP--VLSYVLEQLEL----SN---IKDLIVVVEGADAAL-RV------GGWISAAYVDRLHVEVATVPEDVGT- 90 (456)
Q Consensus 28 llpi~gkp--li~~~l~~l~~----~g---i~~v~iv~~~~~~~~-~i------~~~~~~~~~~~~~i~~~~~~~~~gt- 90 (456)
|+|+.|.+ ++.-+|..+.+ .+ --+|+++ .+....+ .+ .+.. ..+.....+.+...++..|.
T Consensus 4 liP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vl-dD~~d~~~~~~~~~~~~~l~-~~~~~~~~v~~~~r~~~~g~K 81 (254)
T cd04191 4 VMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFIL-SDTRDPDIWLAEEAAWLDLC-EELGAQGRIYYRRRRENTGRK 81 (254)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEE-CCCCChHHHHHHHHHHHHHH-HHhCCCCcEEEEEcCCCCCcc
Confidence 67888875 46677776653 22 3466444 3322211 11 1111 22222334555544444444
Q ss_pred HHHHHHHHhcC--CCCcEEEEcCCcccCCC-hhHHHHHHHhcCceEEEE
Q 012817 91 AGALRAIAHHL--TAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM 136 (456)
Q Consensus 91 ~~al~~~~~~l--~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~a~~t~~ 136 (456)
++.|..++... ..+.++++.+|.+...+ +..++..+.+ +..+.++
T Consensus 82 ag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~-~~~vg~v 129 (254)
T cd04191 82 AGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEA-NPRAGII 129 (254)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHh-CCCEEEE
Confidence 45666665542 34679999999766554 7788877653 3344444
No 318
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=43.40 E-value=1.8e+02 Score=25.30 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=50.3
Q ss_pred cccCC-cchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEEEEcc---CCcChHHHHHHHHhcCC-
Q 012817 29 LPVAN-RPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP---EDVGTAGALRAIAHHLT- 102 (456)
Q Consensus 29 lpi~g-kpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~---~~~gt~~al~~~~~~l~- 102 (456)
+|.-+ ...|..+|+.+.+.. -.+|+|+-+... +...+.+. .......+.++... ...|.+.++..+++...
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~--D~t~~~~~-~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~ 79 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASD--DDTAGIVR-LAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQ 79 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECCCC--cCHHHHHh-heecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhh
Confidence 44433 468888999887654 235555554221 11112222 00011134444332 23678888877766542
Q ss_pred ----------CCcEEEEcCCcccCC-ChhHHHHHH
Q 012817 103 ----------AKDVLVVSGDLVSDV-PPGAVTAAH 126 (456)
Q Consensus 103 ----------~~~~lv~~~D~i~~~-~l~~~l~~~ 126 (456)
.+.++++.+|...+. .+..+....
T Consensus 80 ~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 80 ILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred hccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 145889999966554 466655444
No 319
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=42.57 E-value=27 Score=34.71 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=0.0
Q ss_pred EECCCCEECCCcEEcCeEE-----CCCCEECCCcEecCeEECCCCEE
Q 012817 399 VVMNHVTIGDGCSIQGSVI-----CSNAQLQERVALKDCQVGQGYVV 440 (456)
Q Consensus 399 ~i~~~~~ig~~~~i~~~ii-----~~~~~I~~~~~i~~~~i~~~~~v 440 (456)
.+..+|.+|.++.+.+++| ++...|.+|+++++++|..+..|
T Consensus 449 tVsGdV~FGknV~LkGtViIia~~~~~i~IP~gsVLEn~~v~gn~~i 495 (498)
T KOG2638|consen 449 TVSGDVWFGKNVSLKGTVIIIANEGDRIDIPDGSVLENKIVSGNLRI 495 (498)
T ss_pred EEeccEEeccceEEeeEEEEEecCCCeeecCCCCeeecceEeccccc
No 320
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=42.00 E-value=89 Score=25.52 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=37.9
Q ss_pred HHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcC--CCCcEEEEcCC--ccc
Q 012817 40 VLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL--TAKDVLVVSGD--LVS 115 (456)
Q Consensus 40 ~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l--~~~~~lv~~~D--~i~ 115 (456)
+|+.+.+...-+++|............. + +.. ....+..| ...+.++.+..+.+.. ..+.++++.+| .+.
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~-~--~~~--~~~~~~~Q-~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~ 74 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQ-L--WLP--SGFSFFPQ-QGGDLGERMANAFQQAARGYEPVVLIGSDCPDLT 74 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHH-H--HH---TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhc-c--ccC--CCCEEeec-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCC
Confidence 4677777777777777764432222221 1 111 12455544 3455666776665544 33579999999 566
Q ss_pred CCChhHHHHHHHhc
Q 012817 116 DVPPGAVTAAHRRH 129 (456)
Q Consensus 116 ~~~l~~~l~~~~~~ 129 (456)
...|.+..+...+.
T Consensus 75 ~~~l~~A~~~L~~~ 88 (122)
T PF09837_consen 75 PDDLEQAFEALQRH 88 (122)
T ss_dssp HHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHhccC
Confidence 66677777665443
No 321
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=39.96 E-value=2.7e+02 Score=24.68 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=56.5
Q ss_pred cccCC-cchHHHHHHHHHHCCC---CEEEEEecCc-hhh-HHHHhhhhhhccCccceEEEEcc----CCcChHHHHHHHH
Q 012817 29 LPVAN-RPVLSYVLEQLELSNI---KDLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVP----EDVGTAGALRAIA 98 (456)
Q Consensus 29 lpi~g-kpli~~~l~~l~~~gi---~~v~iv~~~~-~~~-~~i~~~~~~~~~~~~~i~~~~~~----~~~gt~~al~~~~ 98 (456)
+|.-+ ...|..+|+.+.+... -+++|+-+.. +.. +.++++.... ...++.+.... ...|.+.+.-.++
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~G~~~a~N~g~ 80 (219)
T cd06913 3 LPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL--EDSGVIVLVGSHNSPSPKGVGYAKNQAI 80 (219)
T ss_pred EeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC--cccCeEEEEecccCCCCccHHHHHHHHH
Confidence 44444 4688889998876432 2666664422 112 2334433221 11123443322 2357777766667
Q ss_pred hcCCCCcEEEEcCCcc-cCCChhHHHHHHHhcCc
Q 012817 99 HHLTAKDVLVVSGDLV-SDVPPGAVTAAHRRHDA 131 (456)
Q Consensus 99 ~~l~~~~~lv~~~D~i-~~~~l~~~l~~~~~~~a 131 (456)
+....+.++++.+|.+ .+..+..++....+...
T Consensus 81 ~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 81 AQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred HhcCCCEEEEECCCccCChhHHHHHHHHHHhCCC
Confidence 7666678999999954 45557777777665443
No 322
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=39.62 E-value=2.9e+02 Score=24.91 Aligned_cols=87 Identities=17% Similarity=0.090 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcc
Q 012817 35 PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV 114 (456)
Q Consensus 35 pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i 114 (456)
..|..+|+.+... .++++|+-+...+ ...+.+.+ .++.+... ...|.+.+.-.+++....+.++++.+|.+
T Consensus 13 ~~l~~~l~sl~~~-~~eiivvD~gStD--~t~~i~~~-----~~~~v~~~-~~~g~~~~~n~~~~~a~~d~vl~lDaD~~ 83 (229)
T cd02511 13 RNIERCLESVKWA-VDEIIVVDSGSTD--RTVEIAKE-----YGAKVYQR-WWDGFGAQRNFALELATNDWVLSLDADER 83 (229)
T ss_pred HHHHHHHHHHhcc-cCEEEEEeCCCCc--cHHHHHHH-----cCCEEEEC-CCCChHHHHHHHHHhCCCCEEEEEeCCcC
Confidence 5678888888644 3678777653211 11121221 12445444 55677777777777777778999999965
Q ss_pred cCCC-hhHHHHHHHhcC
Q 012817 115 SDVP-PGAVTAAHRRHD 130 (456)
Q Consensus 115 ~~~~-l~~~l~~~~~~~ 130 (456)
...+ +..+.+...+..
T Consensus 84 ~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 84 LTPELADEILALLATDD 100 (229)
T ss_pred cCHHHHHHHHHHHhCCC
Confidence 5544 555665554443
No 323
>PRK10063 putative glycosyl transferase; Provisional
Probab=38.24 E-value=3.2e+02 Score=25.16 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHH----CCC-CEEEEEec-Cchhh-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCCcE
Q 012817 34 RPVLSYVLEQLEL----SNI-KDLIVVVE-GADAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDV 106 (456)
Q Consensus 34 kpli~~~l~~l~~----~gi-~~v~iv~~-~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~ 106 (456)
...|..+|+.+.. .+. -+++|+=+ ..+.. +.++++. ...++.++..+ ..|.+.|+-.+++....+.+
T Consensus 13 ~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-----~~~~i~~i~~~-~~G~~~A~N~Gi~~a~g~~v 86 (248)
T PRK10063 13 LEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-----GIFNLRFVSEP-DNGIYDAMNKGIAMAQGRFA 86 (248)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-----ccCCEEEEECC-CCCHHHHHHHHHHHcCCCEE
Confidence 3467778877753 122 25555532 12212 2233321 11235555443 46888998888887766778
Q ss_pred EEEcCCcccCCChhHHHHHHHhc
Q 012817 107 LVVSGDLVSDVPPGAVTAAHRRH 129 (456)
Q Consensus 107 lv~~~D~i~~~~l~~~l~~~~~~ 129 (456)
+++.+|-+...+..+++.+....
T Consensus 87 ~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 87 LFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred EEEeCCcccCcCHHHHHHHHHhC
Confidence 88887755444544455554433
No 324
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=36.15 E-value=3.2e+02 Score=26.30 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=58.4
Q ss_pred cccCC-cchHHHHHHHHHHC----CCCEEEEEecCc-hhh-HHHHhhhhhhccCccceEEE-EccCCcChHHHHHHHHhc
Q 012817 29 LPVAN-RPVLSYVLEQLELS----NIKDLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVA-TVPEDVGTAGALRAIAHH 100 (456)
Q Consensus 29 lpi~g-kpli~~~l~~l~~~----gi~~v~iv~~~~-~~~-~~i~~~~~~~~~~~~~i~~~-~~~~~~gt~~al~~~~~~ 100 (456)
+|.-| ...|..+|+.+.+. ...+++|+-+.. +.. +..+++..... .. .... ..+...|.+.++..++..
T Consensus 37 IPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~-~~--~~~~~~~~~n~Gkg~A~~~g~~~ 113 (306)
T PRK13915 37 LPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVV-SR--EEILPELPPRPGKGEALWRSLAA 113 (306)
T ss_pred EecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhh-cc--hhhhhccccCCCHHHHHHHHHHh
Confidence 44444 35678888887652 245777665322 211 12222211100 00 0111 113457888888888776
Q ss_pred CCCCcEEEEcCCcc--cCCChhHHHHHHH-hcCceEEEEE
Q 012817 101 LTAKDVLVVSGDLV--SDVPPGAVTAAHR-RHDAVVTAMI 137 (456)
Q Consensus 101 l~~~~~lv~~~D~i--~~~~l~~~l~~~~-~~~a~~t~~~ 137 (456)
...+.++++.+|.. .+..+..+++... +.+.++....
T Consensus 114 a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 114 TTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred cCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 66677999999974 3446888888775 4455554443
No 325
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=33.82 E-value=1.8e+02 Score=27.73 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=57.2
Q ss_pred ccCCcchHHHHHHHHHHCCCC-EEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcC-CC-C-c
Q 012817 30 PVANRPVLSYVLEQLELSNIK-DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL-TA-K-D 105 (456)
Q Consensus 30 pi~gkpli~~~l~~l~~~gi~-~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l-~~-~-~ 105 (456)
-.+...-+...+..+.+.... +.++++.... .+...+.+...+ ...+.++...+..|-+++.-.+.... .. . .
T Consensus 11 ~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s-~d~~~~~~~~~~--~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~ 87 (305)
T COG1216 11 TYNRGEDLVECLASLAAQTYPDDVIVVVDNGS-TDGSLEALKARF--FPNVRLIENGENLGFAGGFNRGIKYALAKGDDY 87 (305)
T ss_pred ecCCHHHHHHHHHHHhcCCCCCcEEEEccCCC-CCCCHHHHHhhc--CCcEEEEEcCCCccchhhhhHHHHHHhcCCCcE
Confidence 344556778888888776543 3333332111 111222222221 12366666666677666555444332 21 2 5
Q ss_pred EEEEcCCcccCC-ChhHHHHHHHhcCceEEE
Q 012817 106 VLVVSGDLVSDV-PPGAVTAAHRRHDAVVTA 135 (456)
Q Consensus 106 ~lv~~~D~i~~~-~l~~~l~~~~~~~a~~t~ 135 (456)
+++++-|.+.+. .+.++++.+.+.+..+.+
T Consensus 88 ~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 88 VLLLNPDTVVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred EEEEcCCeeeChhHHHHHHHHHHhCCCCeEe
Confidence 999999965544 589999998887555433
No 326
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=32.13 E-value=2e+02 Score=21.90 Aligned_cols=51 Identities=20% Similarity=0.425 Sum_probs=35.2
Q ss_pred ccccccCCcchHHHHHHHHHH--CCCCEEEEEecCchhhHH--HHhhhhhhccCc
Q 012817 26 KALLPVANRPVLSYVLEQLEL--SNIKDLIVVVEGADAALR--VGGWISAAYVDR 76 (456)
Q Consensus 26 K~llpi~gkpli~~~l~~l~~--~gi~~v~iv~~~~~~~~~--i~~~~~~~~~~~ 76 (456)
+.-+-++.||...|+|.-+.+ .|.+++++-......+.. +-+.+.+.|...
T Consensus 4 envV~vG~KPvmNYVlAvlt~fn~g~~eViiKARGraIskAVDvaeivRnrf~p~ 58 (91)
T COG1581 4 ENVVLVGKKPVMNYVLAVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPD 58 (91)
T ss_pred ccEEEEcCcchHHHHHHHHHHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCCC
Confidence 355668899999999999854 679999999876654432 233345555543
No 327
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=32.08 E-value=2.1e+02 Score=21.65 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHCCCCEEEEEecCc
Q 012817 35 PVLSYVLEQLELSNIKDLIVVVEGA 59 (456)
Q Consensus 35 pli~~~l~~l~~~gi~~v~iv~~~~ 59 (456)
++|...|......|+++++|+.+..
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s 29 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGS 29 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCC
Confidence 6788889888899999999997643
No 328
>PF13562 NTP_transf_4: Sugar nucleotidyl transferase
Probab=28.00 E-value=2e+02 Score=24.65 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=35.7
Q ss_pred EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEec
Q 012817 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVE 57 (456)
Q Consensus 5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~ 57 (456)
.|++=+..-.+|.|+ |.++|-.=+.+|-..+-+++-..+. ...+..++.
T Consensus 2 iilFdd~~~~~L~Pl-t~tRPV~dlr~Gi~TlrEkwe~~l~---~~~~s~~tr 50 (156)
T PF13562_consen 2 IILFDDEARNNLLPL-TFTRPVADLRCGILTLREKWEKYLG---AATVSFHTR 50 (156)
T ss_pred EEEEcCCChhcccCc-ccccCHHHHhhhHHHHHHHHHHHcC---CCceEEEhh
Confidence 344445455679999 9999999999999999998888774 234555543
No 329
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=25.53 E-value=1.5e+02 Score=22.59 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=26.9
Q ss_pred cccCCcchHHHHHHHHHH--CCCCEEEEEecCchhh
Q 012817 29 LPVANRPVLSYVLEQLEL--SNIKDLIVVVEGADAA 62 (456)
Q Consensus 29 lpi~gkpli~~~l~~l~~--~gi~~v~iv~~~~~~~ 62 (456)
+-++.||+..|++.-+.+ .|.+++.+-......+
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKarG~aIs 39 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKARGRAIS 39 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEecchhh
Confidence 347889999999999875 5789999988755433
No 330
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=25.24 E-value=1.7e+02 Score=28.75 Aligned_cols=57 Identities=18% Similarity=0.353 Sum_probs=42.6
Q ss_pred CCcCCCCCCCcccccccCCcc-hHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhh
Q 012817 15 KLVPLVSKEVPKALLPVANRP-VLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAA 72 (456)
Q Consensus 15 rl~pl~~~~~pK~llpi~gkp-li~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~ 72 (456)
.|.|+ ....+.-++.+-+|| .+.++|+.|.++ ||.+..++.++...++++.+.+.+.
T Consensus 24 ~f~~l-~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~I 82 (356)
T PF05060_consen 24 KFGPL-ANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQSI 82 (356)
T ss_pred hcCCC-CCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHhC
Confidence 35556 556677788889996 888899999875 7999988887665566666666553
No 331
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=24.03 E-value=1.4e+02 Score=29.29 Aligned_cols=53 Identities=9% Similarity=0.209 Sum_probs=34.5
Q ss_pred CceEEEEecCCCCCCcCC-------C---CCCC----cccccccCCcchHHHHHHHHHHCCCCEEEEEe
Q 012817 2 DFQVVVLAGGTSKKLVPL-------V---SKEV----PKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56 (456)
Q Consensus 2 ~~~aiIlagG~g~rl~pl-------~---~~~~----pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~ 56 (456)
+|.++||.| .|||..-- . .... --+++.+ ..|-|...++.|...|.++++|+-
T Consensus 5 ~~~aiLLvg-HGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE~-~ePsl~eal~~l~~~G~~~IvVvP 71 (335)
T PRK05782 5 SNTAIILIG-HGSRRETFNSDMEGMANYLKEKLGVPIYLTYNEF-AEPNWRSLLNEIIKEGYRRVIIAL 71 (335)
T ss_pred CCceEEEEe-cCCCChHHHHHHHHHHHHHHhccCCceEEEEecc-CCCCHHHHHHHHHHCCCCEEEEec
Confidence 578899996 88884100 0 0111 1123333 459999999999999999987774
No 332
>PRK10481 hypothetical protein; Provisional
Probab=23.72 E-value=5.7e+02 Score=23.41 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHCCCCEEEEEecCchhhH-HHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCC--CCcEEEEcCC
Q 012817 36 VLSYVLEQLELSNIKDLIVVVEGADAAL-RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT--AKDVLVVSGD 112 (456)
Q Consensus 36 li~~~l~~l~~~gi~~v~iv~~~~~~~~-~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~--~~~~lv~~~D 112 (456)
+|..++..+.. -.++-|++.+.+... +.++|.. ....+.+.......++.+.++.+.+.+. .-+++++.|-
T Consensus 118 ~i~~lv~Al~~--g~riGVitP~~~qi~~~~~kw~~----~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~ 191 (224)
T PRK10481 118 ILPPLVAAIVG--GHQVGVIVPVEEQLAQQAQKWQV----LQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCL 191 (224)
T ss_pred hHHHHHHHhcC--CCeEEEEEeCHHHHHHHHHHHHh----cCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCC
Confidence 45666666543 389999998665432 3344332 2334445444333566667777766553 3479999997
Q ss_pred cccCCChhHHHHH
Q 012817 113 LVSDVPPGAVTAA 125 (456)
Q Consensus 113 ~i~~~~l~~~l~~ 125 (456)
-+.. ...+.++.
T Consensus 192 G~~~-~~~~~le~ 203 (224)
T PRK10481 192 GYHQ-RHRDLLQK 203 (224)
T ss_pred CcCH-HHHHHHHH
Confidence 6654 44545543
No 333
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=23.12 E-value=1.1e+02 Score=23.94 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.1
Q ss_pred cCCcchHHHHHHHHHHCCCCEEEEEec
Q 012817 31 VANRPVLSYVLEQLELSNIKDLIVVVE 57 (456)
Q Consensus 31 i~gkpli~~~l~~l~~~gi~~v~iv~~ 57 (456)
++|+|+.+++++.+.+.|+.-.++.-+
T Consensus 16 ~~g~~l~~~ll~~~~~~gi~GaTV~rg 42 (101)
T PF02641_consen 16 WGGKPLYEWLLERAREAGIAGATVFRG 42 (101)
T ss_dssp ETTEEHHHHHHHHHHHTT-SEEEEEE-
T ss_pred cCceEHHHHHHHHHHHCCCCeEEEEcc
Confidence 579999999999999999999988865
No 334
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=20.30 E-value=1.7e+02 Score=22.98 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=35.2
Q ss_pred EEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEe
Q 012817 7 VLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56 (456)
Q Consensus 7 IlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~ 56 (456)
++.|..|.-..|+ .+..-.+..-+..+..++.+++.|+++|-+.|.+.-
T Consensus 47 ilPg~~~PTVs~l-~~~~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~~ 95 (100)
T TIGR03455 47 LLPGLEGPTVSPL-ADEGWVAVHAVVDEKVVNELIDKLKAAGARDILVLP 95 (100)
T ss_pred hcCCCCCCCcCcC-CCCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEec
Confidence 3456666666777 333444455566888999999999999999988763
Done!