RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012818
(456 letters)
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Drosophila melanogaster}
Length = 107
Score = 98.8 bits (246), Expect = 3e-25
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 144 EGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWR 203
E + F+ +I F+ K P + L+ L R V GG E T + W
Sbjct: 10 EAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWA 69
Query: 204 QVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKR 238
+V P + +V T + YE+ L +E +
Sbjct: 70 KVANRMQYP-SSKSVGATLKAHYERILHPFEVYTS 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Length = 117
Score = 98.5 bits (245), Expect = 4e-25
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 134 LNDIEMGEADEGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGY 193
+N++E + ++ +I F+ K P L+ L + VV GGY
Sbjct: 2 MNELE------AQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGY 55
Query: 194 EVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKR 238
E + + W +V + + P + R YE+ + YE ++
Sbjct: 56 EAICKDRRWARVAQRLNYP-PGKNIGSLLRSHYERIVYPYEMYQS 99
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator,
developmental protein, dioxygenase, iron, metal-binding,
nucleus, oxidoreductase; NMR {Homo sapiens}
Length = 96
Score = 98.0 bits (244), Expect = 4e-25
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 142 ADEGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKL 201
G+ +F+ ++ F+ K P + L+ L + V GG+E+VT K
Sbjct: 1 GPLGSRVRL-DFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKK 59
Query: 202 WRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKR 238
W +VG + YE+ L YE +
Sbjct: 60 WSKVGSRLGYLPG-KGTGSLLKSHYERILYPYELFQS 95
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein,
DNA-binding motif, protein-DNA interaction; NMR {Homo
sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Length = 107
Score = 97.6 bits (243), Expect = 6e-25
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 148 EEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVG 206
++ F+ + + +E + P + +N +++A +LGGYE +TA + W+ +
Sbjct: 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIY 61
Query: 207 ESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLPAS 248
+ T+ + R YE+ +L YE+ + + LP
Sbjct: 62 DELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPI 103
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 122
Score = 98.1 bits (244), Expect = 8e-25
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 4/120 (3%)
Query: 140 GEADEGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTAS 199
G + E + F+ +I ++ K P + L+ +L + V GG+ VV
Sbjct: 4 GSSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKD 63
Query: 200 KLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLPASSFPQPTNAGKE 259
+ W ++ V R YE+ L Y L P T+ K+
Sbjct: 64 RKWTKIATKMGFA-PGKAVGSHIRGHYERILNPYNLFLSGDSLRCLQK---PNLTSDTKD 119
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor,
transcription, transcription regulation; NMR {Mus
musculus}
Length = 121
Score = 97.2 bits (242), Expect = 1e-24
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 151 AEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESF 209
+ + I+ R + + P G L+ +R + +GG + VT K W ++ +
Sbjct: 14 VQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADML 73
Query: 210 HPPKTCTTVSWTFRIFYEKALLEYEK 235
PKT + Y + LL Y+
Sbjct: 74 RIPKTAQDRLAKLQEAYCQYLLSYDS 99
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction
domain, DNA- binding protein; NMR {Drosophila
melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Length = 128
Score = 90.5 bits (224), Expect = 4e-22
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 145 GTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWR 203
++ EF+ ++ SF ++ + P L+ +L+ V+ GG V KLW+
Sbjct: 18 NDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQ 77
Query: 204 QVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKR---LSGELQLPASS 249
++ + H P + T+ ++T R Y K L YE K+ ELQ
Sbjct: 78 EIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDG 126
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A
1ryu_A
Length = 125
Score = 89.7 bits (222), Expect = 8e-22
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Query: 143 DEGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKL 201
+ G E+ ++ +F E P +PL+ +L+ V +GG V +K
Sbjct: 15 ELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKK 74
Query: 202 WRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLPASS 249
WR++ + + T ++ + + + Y + L +E E S
Sbjct: 75 WRELATNLNVG-TSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFS 121
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain,
DNA binding protein; NMR {Saccharomyces cerevisiae}
SCOP: a.4.3.1 PDB: 1kn5_A
Length = 123
Score = 86.2 bits (213), Expect = 1e-20
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 147 PEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQV 205
++ FMK + ++ + P+ +N L+ V + GG + VT ++ W V
Sbjct: 16 NKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMV 75
Query: 206 GESFHPPKTCTTVSWTFRIFYEKALLEYEKH-KRLSGELQLPASSFPQP 253
+ Y + LL YE+H G + A QP
Sbjct: 76 AQRLQISDYQQL-----ESIYFRILLPYERHMISQEGIKETQAKRILQP 119
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer,
AT-rich interaction domain, NESG, ARID, cytopla binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 145
Score = 85.2 bits (210), Expect = 5e-20
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 10/130 (7%)
Query: 110 TPIPHGESSTSKAEDESVRKSKNWLNDIEMGEADEGTPEEQAEFMKEIESFYRENALEF- 168
H + + L +++ ++ EF+ ++ SF ++
Sbjct: 4 HHHHHSHMPDHGDWTYEEQFKQ--LYELD-------GDPKRKEFLDDLFSFMQKRGTPVN 54
Query: 169 KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEK 228
+ P + L+ L+ V GG V KLWR++ + + P + T+ ++T R Y K
Sbjct: 55 RIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMK 114
Query: 229 ALLEYEKHKR 238
L YE KR
Sbjct: 115 YLYPYECEKR 124
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding,
DNA binding protein; NMR {Saccharomyces cerevisiae}
Length = 116
Score = 79.2 bits (195), Expect = 3e-18
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 143 DEGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKL 201
E ++ FMK + ++ + P+ +N L+ V + GG + VT ++
Sbjct: 13 TELNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQ 72
Query: 202 WRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKR 238
W V + Y + LL YE+H
Sbjct: 73 WSMVAQRLQISDYQQL-----ESIYFRILLPYERHMI 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 4e-11
Identities = 64/403 (15%), Positives = 112/403 (27%), Gaps = 165/403 (40%)
Query: 82 TDELPESTSKTNGDDTHVENEPKTNTS--------VTPIPHGESSTSKAEDESVRKS--- 130
LPE T DD EP T V+ + E S D+ +
Sbjct: 38 NKILPEPTEGFAADD-----EPTTPAELVGKFLGYVSSLV--EPSKVGQFDQVLNLCLTE 90
Query: 131 --KNWL--NDI-----EMGEADEGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCL 181
+L NDI ++ + ++ T + E I+++ + +P
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKEL---IKNYITARIMAKRPFDKKSNS---- 143
Query: 182 KLWRAV----VRL----GG--------------YEV----------VTASKLWRQVGESF 209
L+RAV +L GG Y+ +A L + +
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 210 HPPKTCTT----VSWTFRIFYEKALLEYEKHKRLSGELQLP-----AS---SFP-----Q 252
K T + W L P S S P Q
Sbjct: 204 DAEKVFTQGLNILEW------------------LENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 253 PTN--AGKEASGYQTPGSSRAR--------------------------RDAAARAMQ--- 281
+ + G+ TPG R+ + +A+
Sbjct: 246 LAHYVVTAKLLGF-TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 282 --GWHAQRLLGHGEVAEPIIKD-----KSLPSPARREKQLKNIGLPK----------NRT 324
G + + I++D + +PSP L L + N
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-----MLSISNLTQEQVQDYVNKTNSH 359
Query: 325 LDSAEKA--ALTEADKQ-IITEIVDVGPPAD--WVKINVREAK 362
L + ++ +L K +++ GPP + + +R+AK
Sbjct: 360 LPAGKQVEISLVNGAKNLVVS-----GPPQSLYGLNLTLRKAK 397
Score = 35.4 bits (81), Expect = 0.052
Identities = 30/180 (16%), Positives = 46/180 (25%), Gaps = 75/180 (41%)
Query: 313 QLKNIGLPKNRTLDSAEKAALTEADKQI-------ITEIVDVGPPADWV--------KIN 357
Q + +G+ +T +A + AD I +IV P + +I
Sbjct: 1627 QEQGMGMDLYKTSKAA-QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 358 VREAKDCYEVYA---LVPGLLREEVRVQS------DPAGRLVITGEPEQVDNP------- 401
+ +E L + +E+ S G L T + Q P
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-QFTQ---PALTLMEK 1741
Query: 402 --------WGITPFKKVVILPSRIDPLQTSAVVSLHGRLYGLKLGERQIYEGRDWNYVAL 453
G+ P A G LGE Y AL
Sbjct: 1742 AAFEDLKSKGLIPADATF------------A---------GHSLGE----------YAAL 1770
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 41.3 bits (97), Expect = 5e-05
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 356 INVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGIT--PFKKVVIL 413
V + V V EE+ V+ + + E+ + G F + L
Sbjct: 4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVG-DHVEVHARHEERPDEHGFIAREFHRRYRL 62
Query: 414 PSRIDPLQTSAVVSLHGRL 432
P +DP ++ +S G L
Sbjct: 63 PPGVDPAAVTSALSPEGVL 81
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 42.6 bits (100), Expect = 5e-05
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 356 INVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITP--FKKVVIL 413
+R KD + V V EE++V+ + + G+ E+ + G F + +
Sbjct: 66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRI 124
Query: 414 PSRIDPLQTSAVVSLHGRLY------GLKLGERQI 442
P+ +DPL ++ +S G L + ER I
Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 159
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 41.0 bits (96), Expect = 7e-05
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 356 INVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGIT--PFKKVVIL 413
VR +D + ++ V E++ V+ + I G+ + + G F + L
Sbjct: 5 SEVRSDRDKFVIFLDVKHFSPEDLTVKVQE-DFVEIHGKHNERQDDHGYISREFHRRYRL 63
Query: 414 PSRIDPLQTSAVVSLHGRL 432
PS +D S +S G L
Sbjct: 64 PSNVDQSALSCSLSADGML 82
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 40.1 bits (94), Expect = 1e-04
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 362 KDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGI--TPFKKVVILPSRIDP 419
KD + V V EE++V+ + + G+ E+ + G F + +P+ +DP
Sbjct: 5 KDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRIPADVDP 63
Query: 420 LQTSAVVSLHGRL 432
L ++ +S G L
Sbjct: 64 LTITSSMSSDGVL 76
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 39.6 bits (93), Expect = 1e-04
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 360 EAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGIT--PFKKVVILPSRI 417
D + V V +E+ V++ G + ITG+ + G F + LP +
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTK-DGVVEITGKHAARQDEHGYISRCFTRKYTLPPGV 62
Query: 418 DPLQTSAVVSLHGRL 432
DP Q S+ +S G L
Sbjct: 63 DPTQVSSSLSPEGTL 77
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 38.6 bits (91), Expect = 4e-04
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 351 ADWV-KINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGE 394
A WV +++++E + + +YA +PG+ ++ VQ D G L I GE
Sbjct: 1 AQWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIRGE 44
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 38.9 bits (91), Expect = 0.001
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 349 PPADWVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGE--PEQVDNPWGIT- 405
++ I++ E +V A +PG+ +E++ + + L I + P + I
Sbjct: 52 SGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIY 110
Query: 406 -------PFKKVVILPSRIDPLQTSA 424
+ + LP+ + SA
Sbjct: 111 SEIPEEEEIYRTIKLPATVKEENASA 136
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 37.6 bits (88), Expect = 0.002
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 355 KINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGIT-----PFKK 409
+++ E V A + G +E+++ + L+I E E + +K
Sbjct: 26 PVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRK 85
Query: 410 VVILPSRIDP 419
V+ LP +
Sbjct: 86 VIRLPYNVAK 95
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 37.7 bits (88), Expect = 0.002
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 355 KINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGE 394
+++ +E + + A +PG+ +EEV+V+ + LV++GE
Sbjct: 45 RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGE 84
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 38.7 bits (89), Expect = 0.003
Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 358 VREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGIT-PFKKVVILPSR 416
++ + ++VY V EE+ +++D +LV+ + ++ + + LP
Sbjct: 107 GKDGRLHFKVYFNVKNFKAEEITIKADK-NKLVVRAQKSVACGDAAMSESVGRSIPLPPS 165
Query: 417 IDPLQTSAVVSLHGRL 432
+D A ++ L
Sbjct: 166 VDRNHIQATITTDDVL 181
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.003
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 115 GESSTSKAEDESVRKSKNW--LNDIEMGEADEGTPEEQAEFM----KEIESFYRE 163
++ E ES+RK W + E D + + E+ K++E + +
Sbjct: 75 AQADRLTQEPESIRK---WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.005
Identities = 26/178 (14%), Positives = 50/178 (28%), Gaps = 49/178 (27%)
Query: 274 DAAARAMQGWHAQRLLGHGEVAEPIIKDKSLPSPARREKQLKNIGLPKNRTLDSAEKAAL 333
D Q + + +L E + + + D K+ L
Sbjct: 8 DFETGEHQ-YQYKDILSVFE--DAFVDN-----------------FDCKDVQDM-PKSIL 46
Query: 334 TEADKQIITEIVDVGPPADWVK--INVREAKDCYEVYALVPGLLR-------EEVRVQS- 383
++ + I I+ +K V V +LR ++ +
Sbjct: 47 SKEE---IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 384 DPAGRLVITGEPEQVDNPW-GITPFKKVVILPSRIDP----------LQTSAVVSLHG 430
P+ + EQ D + F K + SR+ P L+ + V + G
Sbjct: 104 QPSMMTRMY--IEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDG 157
Score = 34.1 bits (77), Expect = 0.13
Identities = 71/431 (16%), Positives = 112/431 (25%), Gaps = 138/431 (32%)
Query: 5 EMVDQDSLHISEANLVEASAQQQQASQQPSENGQSSCRETAEDK--PETLPSVDEVFPEK 62
EM+ Q L+ + N S + + Q+ R + K L + V
Sbjct: 200 EML-QKLLYQIDPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---- 253
Query: 63 SDAEATAGVNTKSGGGGAGTDELPESTSKTNGDDTHVENEPKTNTSVTPIPHGESSTSKA 122
+A+A N L + K D + T+ S+ +
Sbjct: 254 QNAKAWNAFN-----LSCKI--LLTTRFKQVTDF--LSAATTTHISLDHHSMTLT----- 299
Query: 123 EDESVRKSKNWLNDIEMGEADEGTPEEQ-----------AEFMKE--------------- 156
DE +L+ D P E AE +++
Sbjct: 300 PDEVKSLLLKYLD---CRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 157 ----IESFYRENAL---EFKPPKFYGE----------PLNCLK-LWRAVVRLGGYEVVTA 198
IES N L E++ K + P L +W V+ V
Sbjct: 355 LTTIIESSL--NVLEPAEYR--KMFDRLSVFPPSAHIPTILLSLIWFDVI----KSDV-- 404
Query: 199 SKLWRQVGESFHPPKTCTTVSW----TFRI------FYEKALLEYEKHKRLSGELQLPAS 248
V H K T I K EY H+ + +P +
Sbjct: 405 ----MVVVNKLH--KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 249 ----SFPQPTNAGKEAS--GYQTPGSSRARRDAAARA-------MQG--------WHAQR 287
P S G+ R R ++ W+A
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 288 ----LLGHGEVAEPIIKDKSLPSPARREKQLKNIGLPKNRT--------------LDSAE 329
L + +P I D P R + + LPK L + +
Sbjct: 519 SILNTLQQLKFYKPYICDND-PKYERLVNAILDF-LPKIEENLICSKYTDLLRIALMAED 576
Query: 330 KAALTEADKQI 340
+A EA KQ+
Sbjct: 577 EAIFEEAHKQV 587
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.21
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 10/33 (30%)
Query: 234 EKH--KRLSGELQL--PASSFPQPT---NAGKE 259
EK K+L L+L S+ P A E
Sbjct: 18 EKQALKKLQASLKLYADDSA---PALAIKATME 47
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.9 bits (66), Expect = 1.2
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 9/106 (8%)
Query: 64 DAEATAGVNTKSGGGGAGTDELPESTSKTNGDDTHVENEPKTNTSVTPIPHGESSTSKAE 123
+ + G S GG A ++ + + ++ E
Sbjct: 39 ENDEGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQE 98
Query: 124 DESVRKSKNWL--NDIEMGEADEGTPEEQAEFM----KEIESFYRE 163
ES+RK W + E D + + E+ K++E + +
Sbjct: 99 PESIRK---WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 141
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein,
hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Length = 306
Score = 29.9 bits (68), Expect = 1.5
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 287 RLLGHGEVAEPIIKDKSLPSPARREKQLKNIGLPKNRTLDSAEKAALTEADKQIIT--EI 344
LL + P + S P + IGL R +D E L D Q + +I
Sbjct: 143 FLLRELQDKVPQLPGFSWIKPCISSASIVYIGL---RDVDPPEHFILKNYDIQYFSMRDI 199
Query: 345 VDVGPPA 351
+G
Sbjct: 200 DRLGIQK 206
>2i2x_A MTAB, methyltransferase 1; TIM barrel and helix bundle (MTAB),
rossman fold and helix B (MTAC); HET: B13; 2.50A
{Methanosarcina barkeri}
Length = 461
Score = 29.2 bits (65), Expect = 2.7
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 128 RKSKNWLNDIEMGEADEGTPEEQAEFMKEIESFYRENALEFKPPKFYG 175
R L D + A E P++ +FM + + Y+ FKP YG
Sbjct: 416 RFETKALADAK--AALEALPDDMDKFMDDCLTKYKSEVKVFKPEN-YG 460
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 3.5
Identities = 27/137 (19%), Positives = 43/137 (31%), Gaps = 25/137 (18%)
Query: 285 AQRLLG--HGEVA-----EPIIKD-----------KSLPSPARREKQLKNIGLPKNRTLD 326
A LLG EV P++ D K + R+E +
Sbjct: 703 AFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIET 762
Query: 327 SAEKAALTEADKQIITEIVDVGPPADWVKINVREAKDCYEVYALVPGLLREEVRVQSDPA 386
+ E + V++ P A N++ + Y V + E+ D
Sbjct: 763 ALEHKVVNGNSADAAYAQVEIQPRA-----NIQLDFPELKPYKQVKQIAPAELEGLLDLE 817
Query: 387 GRLVITGEPEQVDNPWG 403
+V+TG E PWG
Sbjct: 818 RVIVVTGFAEV--GPWG 832
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 28.0 bits (63), Expect = 7.1
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 331 AALTEADKQII--TEIVDVGPPADWVKINVREAKDCYEVYA 369
AA+ K + + G P + EA D E YA
Sbjct: 106 AAIIRRRKHEFSAWLVHEAGKPWKEADADTAEAIDFLEYYA 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.129 0.375
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,937,463
Number of extensions: 422751
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 37
Length of query: 456
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 359
Effective length of database: 3,993,456
Effective search space: 1433650704
Effective search space used: 1433650704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (26.6 bits)