RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012818
(456 letters)
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer
protein {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 128
Score = 105 bits (262), Expect = 9e-28
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 145 GTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWR 203
++ EF+ ++ SF ++ + P L+ +L+ V+ GG V KLW+
Sbjct: 18 NDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQ 77
Query: 204 QVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKR-LSGELQLPAS 248
++ + H P + T+ ++T R Y K L YE K+ LS +L A+
Sbjct: 78 EIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAA 123
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 101 bits (254), Expect = 6e-27
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 148 EEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVG 206
++ F+ + + +E + P + +N +++A +LGGYE +TA + W+ +
Sbjct: 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIY 61
Query: 207 ESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLPAS 248
+ T+ + R YE+ +L YE+ + + LP
Sbjct: 62 DELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPI 103
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 92.2 bits (229), Expect = 3e-23
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 143 DEGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKL 201
+ G E+ ++ +F E A+ P +PL+ +L+ +V +GG V +K
Sbjct: 14 ELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKK 73
Query: 202 WRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGE 242
WR++ + + T ++ + + + Y + L +E +
Sbjct: 74 WRELATNLNVG-TSSSAASSLKKQYIQCLYAFECKIERGED 113
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 102
Score = 84.1 bits (208), Expect = 2e-20
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 148 EEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVG 206
++ FMK + ++ + P+ +N L+ V + GG + VT ++ W V
Sbjct: 3 KQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVA 62
Query: 207 ESFHPPKTCTTVSWTFRIFYEKALLEYEKHKR 238
+ Y + LL YE+H
Sbjct: 63 QRLQISDYQQL-----ESIYFRILLPYERHMI 89
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 33.5 bits (76), Expect = 0.013
Identities = 7/50 (14%), Positives = 21/50 (42%)
Query: 353 WVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPW 402
++ I++ E +V A +PG+ +E++ + + + +
Sbjct: 10 FMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITES 59
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 150
Score = 32.4 bits (73), Expect = 0.040
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 355 KINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPW---------GIT 405
+++ +E + + A +PG+ +EEV+V+ + LV++GE +
Sbjct: 44 RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSG 103
Query: 406 PFKKVVILPSRIDPLQTSA 424
F + L + A
Sbjct: 104 KFVRRFRLLEDAKVEEVKA 122
>d1q8ra_ d.79.6.1 (A:) Holliday junction resolvase RusA {Escherichia
coli [TaxId: 562]}
Length = 118
Score = 28.3 bits (63), Expect = 0.86
Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 13/98 (13%)
Query: 263 YQTPGSSRARRDAAARAMQGWHAQRLLGHGEVAEPIIKDKSLPSPARREKQLKNIGLPKN 322
+ + R + A L P+ P RR + L N+
Sbjct: 26 HVSAEGQAYRDNVARIIKNAMLDIGLAM------PVKIRIECHMPDRRRRDLDNLQKA-- 77
Query: 323 RTLDSAEKAALTEADKQIITEIV----DVGPPADWVKI 356
D+ KA D Q++ V + I
Sbjct: 78 -AFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114
>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated
protein 28, VPS28 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 94
Score = 26.2 bits (58), Expect = 3.2
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 117 SSTSKAEDESVRKSKNWLNDI-EMGEADEGTPEEQAEFMKEIESFY 161
+ ++ + E+ K +W+ I ++ D T + E + ++E Y
Sbjct: 42 NRVTRDDFENRSKLIDWIVRINKLSIGDTLTETQIRELLFDLELAY 87
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Plasmodium knowlesi
[TaxId: 5850]}
Length = 171
Score = 27.0 bits (60), Expect = 3.4
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 143 DEGTPEEQAEFMKEIESFYRENALEFKPPKFY-GEPLNC 180
+E P+ F + + + F +FY GE L+
Sbjct: 103 EEKKPDRVDVFKTKAQPLIKHILTNFDDFEFYMGESLDM 141
>d1lj8a4 c.2.1.6 (A:1-286) Mannitol 2-dehydrogenase {Pseudomonas
fluorescens [TaxId: 294]}
Length = 286
Score = 26.9 bits (59), Expect = 5.3
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 278 RAMQGWHAQRLLGHGEVAEPIIKDKSLPSPARREKQLKNIGLPKNRTLDSAEKAALTEAD 337
RA Q ++ L+ GE + I L S R+ + ++ E + +
Sbjct: 39 RAHQAYYTDALMNTGEGLDWSICGVGLRSEDRKARDDLA---GQDYLFTLYELGDTDDTE 95
Query: 338 KQIITEIVDVGPPAD 352
++I I D+ D
Sbjct: 96 VRVIGSISDMLLAED 110
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 26.9 bits (59), Expect = 5.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 226 YEKALLEYEKHKRLSGELQLPAS 248
+ AL E EKHK G L P++
Sbjct: 21 IKAALAELEKHKNEDGNLTEPSA 43
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
domain {Thermosynechococcus elongatus bp-1 [TaxId:
197221]}
Length = 106
Score = 25.4 bits (56), Expect = 6.3
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 146 TPEEQAEFMKEIESFYRENALE-FKPPK 172
+P ++ + + E+ S YR LE F
Sbjct: 10 SPADKRKLLDELRSIYRTIVLEYFNTDA 37
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 25.2 bits (55), Expect = 7.0
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 210 HPPKTCTTVSWTFRIFYEKALLEYEKHKRLS---GELQLPASSFPQP 253
P +S R +Y+K ++ KR + + + P P
Sbjct: 52 KPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHP 98
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA,
C-terminal domain {Synechococcus elongatus PCC 7942
[TaxId: 1140]}
Length = 106
Score = 25.4 bits (56), Expect = 7.3
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 146 TPEEQAEFMKEIESFYRENALE-FKPPK 172
E + + +++ YRE L F P
Sbjct: 7 PAYESQKLHQAMQTSYREIVLSYFSPNS 34
>d1h6qa_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 168
Score = 25.8 bits (57), Expect = 8.6
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 143 DEGTPEEQAEFMKEIESFYRENALEFKPPKFY-GEPLNC 180
E PE F K F ++ FK FY GE ++
Sbjct: 100 QESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDP 138
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.129 0.375
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,665,806
Number of extensions: 77594
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 16
Length of query: 456
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 368
Effective length of database: 1,199,356
Effective search space: 441363008
Effective search space used: 441363008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (24.7 bits)