BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012819
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 350 bits (899), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 170/262 (64%), Positives = 204/262 (77%), Gaps = 7/262 (2%)
Query: 30 DKITVLPGQPTNVDFNQYSGYVSVNQQAGRALFYWLIESPASRKPESRPLILWLNGGPGC 89
D+I LPGQP VDF+ YSGY++V++ AGR+LFY L E+P +P PL+LWLNGGPGC
Sbjct: 9 DRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPA--PLVLWLNGGPGC 65
Query: 90 SSVAYGAAEEIGPFRIRPDGKTLYLNPYSWNKLANLLFLESPAGVGFSYTNTTSDLYTAG 149
SSVAYGA+EE+G FR++P G L LN Y WNK+AN+LFL+SPAGVGFSYTNT+SD+YT+G
Sbjct: 66 SSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSG 125
Query: 150 DGRTAEDAYTFLVNWFERFPQYKHTDFYIAGESYAGHYVPQLSQIVYERNKGIANPEINF 209
D RTA D+Y FL WFERFP YK+ DFYIAGESYAGHYVP+LSQ+V+ R+K NP IN
Sbjct: 126 DNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH-RSK---NPVINL 181
Query: 210 KGFMVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRSLRIACESGSSEHPSLDCMTALKSA 269
KGFMVGN + DDYHDYVGTFE+WW HG++SD TYR L+ AC S HPS C A A
Sbjct: 182 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVA 241
Query: 270 EMEQGNIDPYSIFTRPCNGTAS 291
EQGNID YS++T CN T+S
Sbjct: 242 TAEQGNIDMYSLYTPVCNITSS 263
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 348 bits (893), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 168/258 (65%), Positives = 201/258 (77%), Gaps = 7/258 (2%)
Query: 30 DKITVLPGQPTNVDFNQYSGYVSVNQQAGRALFYWLIESPASRKPESRPLILWLNGGPGC 89
D+I LPGQP VDF+ YSGY++V++ AGR+LFY L E+P +P PL+LWLNGGPGC
Sbjct: 5 DRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPA--PLVLWLNGGPGC 61
Query: 90 SSVAYGAAEEIGPFRIRPDGKTLYLNPYSWNKLANLLFLESPAGVGFSYTNTTSDLYTAG 149
SSVAYGA+EE+G FR++P G L LN Y WNK+AN+LFL+SPAGVGFSYTNT+SD+YT+G
Sbjct: 62 SSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSG 121
Query: 150 DGRTAEDAYTFLVNWFERFPQYKHTDFYIAGESYAGHYVPQLSQIVYERNKGIANPEINF 209
D RTA D+Y FL WFERFP YK+ DFYIAGESYAGHYVP+LSQ+V+ R+K NP IN
Sbjct: 122 DNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH-RSK---NPVINL 177
Query: 210 KGFMVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRSLRIACESGSSEHPSLDCMTALKSA 269
KGFMVGN + DDYHDYVGTFE+WW HG++SD TYR L+ AC S HPS C A A
Sbjct: 178 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVA 237
Query: 270 EMEQGNIDPYSIFTRPCN 287
EQGNID YS++T CN
Sbjct: 238 TAEQGNIDMYSLYTPVCN 255
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 348 bits (893), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 168/258 (65%), Positives = 201/258 (77%), Gaps = 7/258 (2%)
Query: 30 DKITVLPGQPTNVDFNQYSGYVSVNQQAGRALFYWLIESPASRKPESRPLILWLNGGPGC 89
D+I LPGQP VDF+ YSGY++V++ AGR+LFY L E+P +P PL+LWLNGGPGC
Sbjct: 4 DRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPA--PLVLWLNGGPGC 60
Query: 90 SSVAYGAAEEIGPFRIRPDGKTLYLNPYSWNKLANLLFLESPAGVGFSYTNTTSDLYTAG 149
SSVAYGA+EE+G FR++P G L LN Y WNK+AN+LFL+SPAGVGFSYTNT+SD+YT+G
Sbjct: 61 SSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSG 120
Query: 150 DGRTAEDAYTFLVNWFERFPQYKHTDFYIAGESYAGHYVPQLSQIVYERNKGIANPEINF 209
D RTA D+Y FL WFERFP YK+ DFYIAGESYAGHYVP+LSQ+V+ R+K NP IN
Sbjct: 121 DNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH-RSK---NPVINL 176
Query: 210 KGFMVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRSLRIACESGSSEHPSLDCMTALKSA 269
KGFMVGN + DDYHDYVGTFE+WW HG++SD TYR L+ AC S HPS C A A
Sbjct: 177 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVA 236
Query: 270 EMEQGNIDPYSIFTRPCN 287
EQGNID YS++T CN
Sbjct: 237 TAEQGNIDMYSLYTPVCN 254
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 348 bits (892), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 168/258 (65%), Positives = 201/258 (77%), Gaps = 7/258 (2%)
Query: 30 DKITVLPGQPTNVDFNQYSGYVSVNQQAGRALFYWLIESPASRKPESRPLILWLNGGPGC 89
D+I LPGQP VDF+ YSGY++V++ AGR+LFY L E+P +P PL+LWLNGGPGC
Sbjct: 9 DRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPA--PLVLWLNGGPGC 65
Query: 90 SSVAYGAAEEIGPFRIRPDGKTLYLNPYSWNKLANLLFLESPAGVGFSYTNTTSDLYTAG 149
SSVAYGA+EE+G FR++P G L LN Y WNK+AN+LFL+SPAGVGFSYTNT+SD+YT+G
Sbjct: 66 SSVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSG 125
Query: 150 DGRTAEDAYTFLVNWFERFPQYKHTDFYIAGESYAGHYVPQLSQIVYERNKGIANPEINF 209
D RTA D+Y FL WFERFP YK+ DFYIAGESYAGHYVP+LSQ+V+ R+K NP IN
Sbjct: 126 DNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH-RSK---NPVINL 181
Query: 210 KGFMVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRSLRIACESGSSEHPSLDCMTALKSA 269
KGFMVGN + DDYHDYVGTFE+WW HG++SD TYR L+ AC S HPS C A A
Sbjct: 182 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVA 241
Query: 270 EMEQGNIDPYSIFTRPCN 287
EQGNID YS++T CN
Sbjct: 242 TAEQGNIDMYSLYTPVCN 259
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 282 bits (721), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 139/265 (52%), Positives = 183/265 (69%), Gaps = 6/265 (2%)
Query: 23 SLADQDKDKITVLPGQPTNVDFNQYSGYVSVNQQAGRALFYWLIESPASRKPESRPLILW 82
L Q+ D+I LPGQP V F Y GYV+++ GRAL+YW E+ + + L+LW
Sbjct: 1 QLQQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAP-LVLW 59
Query: 83 LNGGPGCSSVAYGAAEEIGPFRIRPDGKTLYLNPYSWNKLANLLFLESPAGVGFSYTNTT 142
LNGGPGCSS+ GA +E+G FR+ +G++L LN Y+WNK AN+LF ESPAGVGFSY+NT+
Sbjct: 60 LNGGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTS 119
Query: 143 SDLYTAGDGRTAEDAYTFLVNWFERFPQYKHTDFYIAGESYAGHYVPQLSQIVYERNKGI 202
SDL + GD + A+D YTFLV WFERFP Y + +FYIAGES GH++PQLSQ+VY RN+
Sbjct: 120 SDL-SMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVY-RNRN- 174
Query: 203 ANPEINFKGFMVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRSLRIACESGSSEHPSLDC 262
+P INF+G +V + +T+D+ D +G FE WW HGLISD T S C S HP+ +C
Sbjct: 175 NSPFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPEC 234
Query: 263 MTALKSAEMEQGNIDPYSIFTRPCN 287
A EQGNI+PY+I+T C+
Sbjct: 235 TEVWNKALAEQGNINPYTIYTPTCD 259
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 238 bits (607), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 109/151 (72%), Positives = 129/151 (85%), Gaps = 1/151 (0%)
Query: 306 AYDPCTERYSEVYFNHPEVQKALHANVTG-ISYPWRTCSEIVGDNWTDSPLSMLPIYKEL 364
+YDPCTERYS Y+N +VQ ALHANVTG ++Y W TCS+ + +W D+P SMLPIY+EL
Sbjct: 3 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 62
Query: 365 IAAGLKIWVFSGDTDAVVPVTATRYSIDALKLPTVINWYPWYDNRKVGGWSQVYKGLTFV 424
IAAGL+IWVFSGDTDAVVP+TATRYSI AL LPT +WYPWYD+++VGGWSQVYKGLT V
Sbjct: 63 IAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLV 122
Query: 425 TVTGAGHEVPLHRPRQAFILFRSFLENKPMP 455
+V GAGHEVPLHRPRQA +LF+ FL+ KPMP
Sbjct: 123 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/151 (72%), Positives = 129/151 (85%), Gaps = 1/151 (0%)
Query: 306 AYDPCTERYSEVYFNHPEVQKALHANVTG-ISYPWRTCSEIVGDNWTDSPLSMLPIYKEL 364
+YDPCTERYS Y+N +VQ ALHANVTG ++Y W TCS+ + +W D+P SMLPIY+EL
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 365 IAAGLKIWVFSGDTDAVVPVTATRYSIDALKLPTVINWYPWYDNRKVGGWSQVYKGLTFV 424
IAAGL+IWVFSGDTDAVVP+TATRYSI AL LPT +WYPWYD+++VGGWSQVYKGLT V
Sbjct: 61 IAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLV 120
Query: 425 TVTGAGHEVPLHRPRQAFILFRSFLENKPMP 455
+V GAGHEVPLHRPRQA +LF+ FL+ KPMP
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/151 (72%), Positives = 129/151 (85%), Gaps = 1/151 (0%)
Query: 306 AYDPCTERYSEVYFNHPEVQKALHANVTG-ISYPWRTCSEIVGDNWTDSPLSMLPIYKEL 364
+YDPCTERYS Y+N +VQ ALHANVTG ++Y W TCS+ + +W D+P SMLPIY+EL
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 365 IAAGLKIWVFSGDTDAVVPVTATRYSIDALKLPTVINWYPWYDNRKVGGWSQVYKGLTFV 424
IAAGL+IWVFSGDTDAVVP+TATRYSI AL LPT +WYPWYD+++VGGWSQVYKGLT V
Sbjct: 61 IAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLV 120
Query: 425 TVTGAGHEVPLHRPRQAFILFRSFLENKPMP 455
+V GAGHEVPLHRPRQA +LF+ FL+ KPMP
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/151 (72%), Positives = 129/151 (85%), Gaps = 1/151 (0%)
Query: 306 AYDPCTERYSEVYFNHPEVQKALHANVTG-ISYPWRTCSEIVGDNWTDSPLSMLPIYKEL 364
+YDPCTERYS Y+N +VQ ALHANVTG ++Y W TCS+ + +W D+P SMLPIY+EL
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 365 IAAGLKIWVFSGDTDAVVPVTATRYSIDALKLPTVINWYPWYDNRKVGGWSQVYKGLTFV 424
IAAGL+IWVFSGDTDAVVP+TATRYSI AL LPT +WYPWYD+++VGGWSQVYKGLT V
Sbjct: 61 IAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLV 120
Query: 425 TVTGAGHEVPLHRPRQAFILFRSFLENKPMP 455
+V GAGHEVPLHRPRQA +LF+ FL+ KPMP
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 234/464 (50%), Gaps = 53/464 (11%)
Query: 28 DKDKITVLPGQPTNVDFNQYSGYVSVNQQAGRALFYWLIESPASRKPESRPLILWLNGGP 87
D+D+I LPG F QYSGY+ + L YW +ES + PE+ P++LWLNGGP
Sbjct: 3 DQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVES--QKDPENSPVVLWLNGGP 58
Query: 88 GCSSVAYGAAEEIGPFRIRPDGKTLYLNPYSWNKLANLLFLESPAGVGFSYTNTTSDLYT 147
GCSS+ G E GPF ++PDG TL NPYSWN +AN+L+LESPAGVGFSY++ Y
Sbjct: 59 GCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYA 115
Query: 148 AGDGRTAEDAYTFLVNWFERFPQYKHTDFYIAGESYAGHYVPQLSQIVYERNKGIANPEI 207
D A+ + L ++F FP+YK+ ++ GESYAG Y+P L+ +V + +P +
Sbjct: 116 TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLV------MQDPSM 169
Query: 208 NFKGFMVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRSLRIACESGSS----EHPSLDCM 263
N +G VGN ++ + + + HGL+ + + SL+ C S + ++ L+C+
Sbjct: 170 NLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECV 229
Query: 264 TALKSAEMEQGN--IDPYSIFTRPCNGTASLRR------------NLRGHYPW------- 302
T L+ GN ++ Y+++ G S R N+ P
Sbjct: 230 TNLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQA 289
Query: 303 MSRAYD------PCTERY-SEVYFNHPEVQKALHANVTGISYPWRTCSEIVGDNWTDSPL 355
+ R+ D PCT + Y N+P V+KAL N+ W C+ +V +
Sbjct: 290 LLRSGDKVRMDPPCTNTTAASTYLNNPYVRKAL--NIPEQLPQWDMCNFLVNLQYRRLYR 347
Query: 356 SMLPIYKELIAA-GLKIWVFSGDTDAVVPVTATRYSIDALKLPTVINWYPWY-----DNR 409
SM Y +L+++ +I +++GD D + +D+L + PW
Sbjct: 348 SMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGE 407
Query: 410 KVGGWSQVYKGLTFVTVTGAGHEVPLHRPRQAFILFRSFLENKP 453
++ G+ + + + F+T+ GAGH VP +P AF +F FL +P
Sbjct: 408 QIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 451
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/154 (58%), Positives = 114/154 (74%), Gaps = 4/154 (2%)
Query: 307 YDPCTERYSEVYFNHPEVQKALHANVTGI-SYPWRTCSEIVGDNWTDSPLSMLPIYKELI 365
YDPC S Y N PEVQ ALHANV+GI YPW CS + D W + +LP+Y+ELI
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 366 AAGLKIWVFSGDTDAVVPVTATRYSIDALKLPTVINWYPWY---DNRKVGGWSQVYKGLT 422
AGL++WV+SGDTD+VVPV++TR S+ AL+LP +WYPWY R+VGGWS Y+GLT
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLT 123
Query: 423 FVTVTGAGHEVPLHRPRQAFILFRSFLENKPMPS 456
+VTV GAGH VP+HRP QAF+LF+ FL+ +PMP+
Sbjct: 124 YVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMPA 157
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/267 (38%), Positives = 155/267 (58%), Gaps = 20/267 (7%)
Query: 28 DKDKITVLPGQPTNVDFNQYSGYVSVNQQAGRALFYWLIESPASRKPESRPLILWLNGGP 87
D+D+I LPG F QYSGY+ + L YW +ES + PE+ P++LWLNGGP
Sbjct: 5 DQDEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVES--QKDPENSPVVLWLNGGP 60
Query: 88 GCSSVAYGAAEEIGPFRIRPDGKTLYLNPYSWNKLANLLFLESPAGVGFSYTNTTSDLYT 147
GCSS+ G E GPF ++PDG TL NPYSWN +AN+L+LESPAGVGFSY++ Y
Sbjct: 61 GCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYA 117
Query: 148 AGDGRTAEDAYTFLVNWFERFPQYKHTDFYIAGESYAGHYVPQLSQIVYERNKGIANPEI 207
D A+ + L ++F FP+YK+ ++ GESYAG Y+P L+ +V + +P +
Sbjct: 118 TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLV------MQDPSM 171
Query: 208 NFKGFMVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRSLRIACESGSS----EHPSLDCM 263
N +G VGN ++ + + + HGL+ + + SL+ C S + ++ L+C+
Sbjct: 172 NLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECV 231
Query: 264 TALKSAEMEQGN--IDPYSIFTRPCNG 288
T L+ GN ++ Y+++ PC G
Sbjct: 232 TNLQEVARIVGNSGLNIYNLYA-PCAG 257
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 197/433 (45%), Gaps = 62/433 (14%)
Query: 46 QYSGYVSVNQQAGRALFYWLIESPASRKPESRPLILWLNGGPGCSSVAYGAAEEIGPFRI 105
QY+GY+ V + + F+W ES P P+ILWLNGGPGCSS+ G E+GP I
Sbjct: 16 QYTGYLDV-EDEDKHFFFWTFES--RNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSI 71
Query: 106 RPDGKTLYLNPYSWNKLANLLFLESPAGVGFSYTNTTSDLYTAGDGRTAEDAYTFLVNWF 165
PD K + NPYSWN A ++FL+ P VGFSY+ ++ T G+ D Y FL +F
Sbjct: 72 GPDLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGK---DVYNFLELFF 127
Query: 166 ERFPQY--KHTDFYIAGESYAGHYVPQL-SQIVYERNKGIANPEINFKGFMVGNAVTD-- 220
++FP+Y K DF+IAGESYAGHY+P S+I+ +++ N ++GN +TD
Sbjct: 128 DQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDR-----NFNLTSVLIGNGLTDPL 182
Query: 221 ---DYHDYVGTFEYWWTHGL-------ISDSTYRSLRIACESGSSEHPSLDCMTALKSAE 270
+Y++ + E L + DS R L + ES C+ A
Sbjct: 183 TQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLI-ESCYDSQSVWSCVPATIYCN 241
Query: 271 MEQGNIDPYSIFTRPCNGTASLRRNLRGH---YPWMSRAYDPCTERYSEVYFNHPEVQKA 327
Q + PY R +R++ G YP + D Y N V++A
Sbjct: 242 NAQ--LAPYQ---RTGRNVYDIRKDCEGGNLCYPTLQDIDD---------YLNQDYVKEA 287
Query: 328 LHANVTGISYPWRTCSEIVGDNWTDSPLSMLPIYK---ELIAAGLKIWVFSGDTDAVVPV 384
+ A V + +C+ + N+ + M P + +L+ L I V++GD D +
Sbjct: 288 VGAEVDH----YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNW 343
Query: 385 TATRYSIDAL--------KLPTVINWYPWYDNRKVGGWSQVYKGLTFVTVTGAGHEVPLH 436
+ D L V NW + +V G + YK T++ V GH VP
Sbjct: 344 LGNKAWTDVLPWKYDEEFASQKVRNWTASITD-EVAGEVKSYKHFTYLRVFNGGHMVPFD 402
Query: 437 RPRQAFILFRSFL 449
P A + ++
Sbjct: 403 VPENALSMVNEWI 415
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 185/409 (45%), Gaps = 39/409 (9%)
Query: 62 FYWLIESPASRKPESRPLILWLNGGPGCSSVAYGAAEEIGPFRIRPDGKTLYLNPYSWNK 121
F+W + S RPLI+WLNGGPGCSS+ GA E GPFR+ DGK LYLN SW
Sbjct: 52 FFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD-GALVESGPFRVNSDGK-LYLNEGSWIS 109
Query: 122 LANLLFLESPAGVGFSYTNTTSDLYTAGDGRTAEDA-------YTFLVNWFERFPQYKHT 174
+LLF++ P G GFS D + ED FL N+F+ FP+
Sbjct: 110 KGDLLFIDQPTGTGFS-VEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTR 168
Query: 175 DFYIAGESYAGHYVPQLSQIVYERNK--GIANPEINFKGFMVGNAVTDDYHDYVGTFEYW 232
++GESYAG Y+P + + NK I + K ++GN D + +
Sbjct: 169 KIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFA 228
Query: 233 WTHGLISDS--TYRSLRIACESGSSEHPSLDCMTALKSAEMEQGNIDPYSI-FTRPCN-- 287
LI +S ++ L A E+ + S A + E NI + +TR +
Sbjct: 229 MEKKLIDESNPNFKHLTNAHENCQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQK 288
Query: 288 GTASLRR----NLRGHYPWMSRAYDPCTERYSEVYFNHPEVQKALHANVTGISYPWRTCS 343
GTA NL+ YP + P + +F+ P V +LH + I + W+ C+
Sbjct: 289 GTADCLNMYNFNLKDSYPSCGMNW-PKDISFVSKFFSTPGVIDSLHLDSDKIDH-WKECT 346
Query: 344 EIVGDNWTDSPLSMLPIY--KELIAAGLKIWVFSGDTDAVVPVTATRYSIDALKLPTVIN 401
VG + +P+S I+ L+ +G++I +F+GD D + +ID LK +
Sbjct: 347 NSVGTKLS-NPISKPSIHLLPGLLESGIEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKG 405
Query: 402 W------YPWY-------DNRKVGGWSQVYKGLTFVTVTGAGHEVPLHR 437
+ + W D+ + G+ + + LTFV+V A H VP +
Sbjct: 406 FSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSVYNASHMVPFDK 454
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 129/433 (29%), Positives = 195/433 (45%), Gaps = 62/433 (14%)
Query: 46 QYSGYVSVNQQAGRALFYWLIESPASRKPESRPLILWLNGGPGCSSVAYGAAEEIGPFRI 105
QY+GY+ V + + F+W ES P P+ILWLNGGPGCSS+ G +GP I
Sbjct: 16 QYTGYLDVEDE-DKHFFFWTFES--RNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSSI 71
Query: 106 RPDGKTLYLNPYSWNKLANLLFLESPAGVGFSYTNTTSDLYTAGDGRTAEDAYTFLVNWF 165
PD K + NPYSWN A ++FL+ P VGFSY+ ++ T G+ D Y FL +F
Sbjct: 72 GPDLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGK---DVYNFLELFF 127
Query: 166 ERFPQY--KHTDFYIAGESYAGHYVPQL-SQIVYERNKGIANPEINFKGFMVGNAVTD-- 220
++FP+Y K DF+IAG SYAGHY+P S+I+ +++ N ++GN +TD
Sbjct: 128 DQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDR-----NFNLTSVLIGNGLTDPL 182
Query: 221 ---DYHDYVGTFEYWWTHGL-------ISDSTYRSLRIACESGSSEHPSLDCMTALKSAE 270
+Y++ + E L + DS R L + ES C+ A
Sbjct: 183 TQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLI-ESCYDSQSVWSCVPATIYCN 241
Query: 271 MEQGNIDPYSIFTRPCNGTASLRRNLRGH---YPWMSRAYDPCTERYSEVYFNHPEVQKA 327
Q + PY R +R++ G YP + D Y N V++A
Sbjct: 242 NAQ--LAPYQ---RTGRNVYDIRKDCEGGNLCYPTLQDIDD---------YLNQDYVKEA 287
Query: 328 LHANVTGISYPWRTCSEIVGDNWTDSPLSMLPIYK---ELIAAGLKIWVFSGDTDAVVPV 384
+ A V + +C+ + N+ + M P + +L+ L I V++GD D +
Sbjct: 288 VGAEVDH----YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNW 343
Query: 385 TATRYSIDAL--------KLPTVINWYPWYDNRKVGGWSQVYKGLTFVTVTGAGHEVPLH 436
+ D L V NW + +V G + YK T++ V GH VP
Sbjct: 344 LGNKAWTDVLPWKYDEEFASQKVRNWTASITD-EVAGEVKSYKHFTYLRVFNGGHMVPFD 402
Query: 437 RPRQAFILFRSFL 449
P A + ++
Sbjct: 403 VPENALSMVNEWI 415
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 309 PCTERYS-EVYFNHPEVQKALHANVTGISYPWRTCSEIVGDNWTDSPLSMLPIYKELIAA 367
PCT + Y N+P V+KAL N+ W C+ +V + SM Y +L+++
Sbjct: 4 PCTNTTAASTYLNNPYVRKAL--NIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSS 61
Query: 368 -GLKIWVFSGDTDAVVPVTATRYSIDALKLPTVINWYPWY-----DNRKVGGWSQVYKGL 421
+I +++GD D + +D+L + PW ++ G+ + + +
Sbjct: 62 QKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHI 121
Query: 422 TFVTVTGAGHEVPLHRPRQAFILFRSFLENKP 453
F+T+ GAGH VP +P AF +F FL +P
Sbjct: 122 AFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 153
>pdb|2RAW|B Chain B, Crystal Structure Of The Borealin-survivin Complex
pdb|2RAX|B Chain B, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
pdb|2RAX|F Chain F, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
pdb|2RAX|Y Chain Y, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
Length = 68
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 389 YSIDALKLPTVINWYPWYDNRKVGGWSQ 416
Y+I+ L+LP + W D +GGWS
Sbjct: 36 YNIEILRLPKALREMNWLDYFALGGWSH 63
>pdb|3JYR|A Chain A, Crystal Structures Of The Gach Receptor Of Streptomyces
Glaucescens Gla.O In The Unliganded Form And In Complex
With Acarbose And An Acarbose Homolog. Comparison With
Acarbose-Loaded Maltose Binding Protein Of Salmonella
Typhimurium
Length = 396
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 60 ALFYWLIESPASRKPESRPLILWLNGGPGCSSVA 93
AL +I +PA K E L++W+NG G + +A
Sbjct: 14 ALTTMMISAPALAKIEEGKLVIWINGDKGYNGLA 47
>pdb|3LEW|A Chain A, Crystal Structure Of Susd-Like Carbohydrate Binding
Protein (Yp_001298396.1) From Bacteroides Vulgatus Atcc
8482 At 1.70 A Resolution
Length = 495
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 5 QFLVL-GFLYLVLCSCFSYSLADQDKDKI 32
Q L L GFLYL L SC+S+++ D+D D +
Sbjct: 120 QALALRGFLYLHLASCYSFAI-DKDPDAV 147
>pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
pdb|1MDW|B Chain B, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
Length = 328
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 213 MVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRSLRIACESGSSEHPSLDCMTALKSAEME 272
+ G A T+ + D+ G W+ + ++ ++ A E GS S+D +A S +
Sbjct: 177 LSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVT 236
Query: 273 QGNI---DPYSIF-TRPCNGTASLRRNLRGHYPW 302
+ YS+ + SL++ +R PW
Sbjct: 237 YQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPW 270
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 213 MVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRSLRIACESGSSEHPSLDCMTALKSAEME 272
+ G A T+ + D+ G W+ + ++ ++ A E GS S+D +A S +
Sbjct: 195 LSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVT 254
Query: 273 QGNI---DPYSIF-TRPCNGTASLRRNLRGHYPW 302
+ YS+ + SL++ +R PW
Sbjct: 255 YQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPW 288
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 213 MVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRSLRIACESGSSEHPSLDCMTALKSAEME 272
+ G A T+ + D+ G W+ + ++ ++ A E GS S+D +A S +
Sbjct: 195 LSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVT 254
Query: 273 QGNI---DPYSIF-TRPCNGTASLRRNLRGHYPW 302
+ YS+ + SL++ +R PW
Sbjct: 255 YQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPW 288
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 213 MVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRSLRIACESGSSEHPSLDCMTALKSAEME 272
+ G A T+ + D+ G W+ + ++ ++ A E GS S+D +A S +
Sbjct: 195 LSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVT 254
Query: 273 QGNI---DPYSIF-TRPCNGTASLRRNLRGHYPW 302
+ YS+ + SL++ +R PW
Sbjct: 255 YQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPW 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,360,453
Number of Sequences: 62578
Number of extensions: 704142
Number of successful extensions: 1541
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 39
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)