Query 012820
Match_columns 456
No_of_seqs 321 out of 2132
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:52:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 7E-47 2.4E-51 378.9 25.3 293 107-436 7-303 (320)
2 3v5u_A Uncharacterized membran 99.8 1.5E-19 5.3E-24 180.8 14.9 143 290-438 4-147 (320)
3 2oar_A Large-conductance mecha 23.7 37 0.0013 30.2 2.2 32 347-378 31-69 (174)
4 2kdc_A Diacylglycerol kinase; 18.0 3.7E+02 0.013 22.1 7.2 40 97-136 44-84 (121)
5 3arc_L Photosystem II reaction 14.3 2.6E+02 0.0088 18.1 4.0 30 197-226 6-35 (37)
6 3gia_A Uncharacterized protein 9.9 6.2E+02 0.021 24.4 7.6 20 249-268 407-426 (444)
7 3lae_A UPF0053 protein HI0107; 6.9 1.5E+02 0.0051 22.2 1.0 24 128-151 20-51 (81)
8 3l1l_A Arginine/agmatine antip 6.6 1.1E+03 0.039 22.3 7.9 14 251-264 417-430 (445)
9 3llb_A Uncharacterized protein 6.2 1.6E+02 0.0054 22.2 0.8 17 136-152 36-52 (83)
10 2fvh_A Urease gamma subunit; p 5.4 1.2E+03 0.042 19.0 5.7 46 383-428 18-64 (120)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=7e-47 Score=378.88 Aligned_cols=293 Identities=18% Similarity=0.180 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--Ccccchhhhhcc-chhHHHHHHHHhhcCCcceehhhhhhHHHHHHHHHH
Q 012820 107 WVFALSLLGLAPLAERVSFLTEQIAYFTG--PTVGGLMNATCG-NATELIIALFALYENKIHVLKYSLLGSVLSNLLLVL 183 (456)
Q Consensus 107 ~vF~~~~laiipla~~l~~a~e~la~~~G--~~vGGll~a~~g-n~pElivsi~Al~~g~~~ia~gsilGSil~nllLvl 183 (456)
..|+++++.+++.++++++++|++|+++| +.+.|++++++| |+||+++++.|..+|++|+++||++|||++|+++++
T Consensus 7 ~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillvl 86 (320)
T 3v5u_A 7 GYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLVL 86 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHHH
Confidence 45788999999999999999999999999 899999999999 799999999999999999999999999999999999
Q ss_pred HHHHHhccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccchhHHHHHHHHHHHHHHHHhh
Q 012820 184 GTSLLCGGLANIREEQRYDRKQADVNSLLLLLGLLCQMLPLLFRYAAEPGTFPADSILQLSRASSILMLLAYVAYIFFQL 263 (456)
Q Consensus 184 G~~~l~gg~~~~~~~q~~~~~~a~~~~~ll~lav~~lllP~~~~~~~~~~~~~~~~~~~lsr~~siiLl~~Y~~yl~f~l 263 (456)
|++.++++++ .++.+.+ + ..+++++.+.+ ++ + ..| + ++|++|++|+.+|+.|++|++
T Consensus 87 G~~~li~p~~---v~~~~~~-d----~~~~l~~~~~l-~~--~---------~~~--g-is~~~g~~Ll~~Y~~yl~~~~ 143 (320)
T 3v5u_A 87 GLSAIISPII---VDKNLQK-N----ILVYLLFVIFA-AV--I---------GID--G-FSWIDGVVLLILFIIYLRWTV 143 (320)
T ss_dssp HHHHHHSCBC---CCHHHHH-H----HHHHHHHHHHH-HH--H---------TTT--C-BCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccc---ccHHHHH-H----HHHHHHHHHHH-HH--H---------HHc--c-cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875 2333322 2 22233332221 11 1 123 3 899999999999999999999
Q ss_pred hhccccccCCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhhCCCccceeeehhhhccchhHHHH
Q 012820 264 KTHRKLFESQEEDEDEDEEKAVIGFWSAFSWLVGMTAIIAVLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAG 343 (456)
Q Consensus 264 ~th~~~f~~~~~~~~~~~e~~~~s~~~~i~~Lvi~~~~i~~~a~~lV~si~~ia~~~gis~~~iGlillpi~tslpE~~~ 343 (456)
++|++. ++ + +|++++.+.++.+.+++++++++..+++++|++++.+++.+|+|+.++|+|++|++||+||+++
T Consensus 144 ~~~~~~----~~-~--~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~ 216 (320)
T 3v5u_A 144 KNGSAE----IE-E--NNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMV 216 (320)
T ss_dssp HHTBC--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHH
T ss_pred Hhcccc----cc-c--ccccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHH
Confidence 998751 11 1 1223345678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccHHHHHhhHHHHHHHhHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHhCCccchHHHHHHH
Q 012820 344 SIIFAFKNKLDISLGVALGSATQISMFVVPLCVVIAWIIGVYMDLDFSLLETGSLAFTIIIVAFTLQDGTSHYMKGVVLF 423 (456)
Q Consensus 344 ai~aa~kg~~dlaig~~iGS~i~~~l~vip~~vli~~~~g~~~~l~f~~~~~~~l~lsvl~~~~~~~~g~~~~~~G~~Ll 423 (456)
++.++|||+.|+|+||++|||+||+++++|+..++. |++++ .+|...++.+.+++.+.++|||.+|+||.+|+
T Consensus 217 sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~li~-----p~~~~--~~d~~~~l~~~~ll~~~~~~~~i~~~eG~~ll 289 (320)
T 3v5u_A 217 SLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFM-----HLPAE--NVQMAVLVIMSLLLYLFAKYSKIGRWQGILFL 289 (320)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHS-----CBCCC--HHHHHHHHHHHHHHHHHHHHSCBSHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHHhhc-----cccch--HHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHH
Confidence 999999999999999999999999999999988875 45543 56665544444444447789999999999999
Q ss_pred HHHHH-HHHHHHHc
Q 012820 424 LCYIA-IAACFFVH 436 (456)
Q Consensus 424 ~~Y~i-~~~~~~~~ 436 (456)
++|++ |+...+..
T Consensus 290 ~~Y~~~y~~~~~~~ 303 (320)
T 3v5u_A 290 ALYIIAIASLRMGG 303 (320)
T ss_dssp HHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999 98776643
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.81 E-value=1.5e-19 Score=180.76 Aligned_cols=143 Identities=19% Similarity=0.182 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHhhhCCCccceeeehhhhccchhHHHHHHHHHHhCCCccHHHHHhhHHHHHHH
Q 012820 290 SAFSWLVGMTAIIAVLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVALGSATQISM 369 (456)
Q Consensus 290 ~~i~~Lvi~~~~i~~~a~~lV~si~~ia~~~gis~~~iGlillpi~tslpE~~~ai~aa~kg~~dlaig~~iGS~i~~~l 369 (456)
..+.+++++++++..++++++++.+.+++++|+|+.++|+|++|+|||+||+++++.++++|+.|+++||++|||++|++
T Consensus 4 ~~~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nil 83 (320)
T 3v5u_A 4 LGVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIG 83 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHccC
Q 012820 370 FVVPLCVVIAWIIGVYMDLDFS-LLETGSLAFTIIIVAFTLQDGTSHYMKGVVLFLCYIAIAACFFVHKI 438 (456)
Q Consensus 370 ~vip~~vli~~~~g~~~~l~f~-~~~~~~l~lsvl~~~~~~~~g~~~~~~G~~Ll~~Y~i~~~~~~~~~~ 438 (456)
+++|+..++++ +..+.. ..+...++++.++..+...|+ .+|++|.+|+.+|++|+...+....
T Consensus 84 lvlG~~~li~p-----~~v~~~~~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~~ 147 (320)
T 3v5u_A 84 LVLGLSAIISP-----IIVDKNLQKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNGS 147 (320)
T ss_dssp THHHHHHHHSC-----BCCCHHHHHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHcc-----ccccHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998874 222211 234444444444445556788 9999999999999999998776544
No 3
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=23.71 E-value=37 Score=30.16 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=21.7
Q ss_pred HHHhCC-CccHHHHHhhHHHH---HHH---hHHHHHHHH
Q 012820 347 FAFKNK-LDISLGVALGSATQ---ISM---FVVPLCVVI 378 (456)
Q Consensus 347 aa~kg~-~dlaig~~iGS~i~---~~l---~vip~~vli 378 (456)
++.||+ +|+|+|.++|++.. +.+ ++.|++.++
T Consensus 31 Fi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIgl~ 69 (174)
T 2oar_A 31 FLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 69 (174)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 456665 59999999999853 222 357766543
No 4
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=17.97 E-value=3.7e+02 Score=22.12 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=31.6
Q ss_pred HHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 012820 97 IARLNNFGR-PWVFALSLLGLAPLAERVSFLTEQIAYFTGP 136 (456)
Q Consensus 97 ~~~~~~~~~-~~vF~~~~laiipla~~l~~a~e~la~~~G~ 136 (456)
.+-+++.+. .|.+.+..+.++..++.+..+.|.+..+.++
T Consensus 44 ~~~~l~~s~~e~~~li~~i~lVl~~EllNTAIE~vvD~v~~ 84 (121)
T 2kdc_A 44 IACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGS 84 (121)
T ss_dssp HHHHCCCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334555544 6778888889999999999999999988774
No 5
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=14.34 E-value=2.6e+02 Score=18.10 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=19.2
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHH
Q 012820 197 EEQRYDRKQADVNSLLLLLGLLCQMLPLLF 226 (456)
Q Consensus 197 ~~q~~~~~~a~~~~~ll~lav~~lllP~~~ 226 (456)
.+|......++.+..++++-++..+++..|
T Consensus 6 n~q~VELNRTSLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 6 NRQPVELNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp TCCCBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceechhhHHHHHHHHHHHHHHhhhhc
Confidence 455555555677888887777776665433
No 6
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=9.90 E-value=6.2e+02 Score=24.39 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhhhccc
Q 012820 249 ILMLLAYVAYIFFQLKTHRK 268 (456)
Q Consensus 249 iiLl~~Y~~yl~f~l~th~~ 268 (456)
.++++.++.|.++..+++|+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~ 426 (444)
T 3gia_A 407 ATFIGVLIFEIIYRKVTKRT 426 (444)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 34444455555444444443
No 7
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=6.87 E-value=1.5e+02 Score=22.20 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=18.3
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 012820 128 EQIAYFTG--------PTVGGLMNATCGNATE 151 (456)
Q Consensus 128 e~la~~~G--------~~vGGll~a~~gn~pE 151 (456)
+++.+.+| +|+||++..-+|..|+
T Consensus 20 ~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~ 51 (81)
T 3lae_A 20 RDLNKMFNWELDTEDARTFNGLILEHLEEIPD 51 (81)
T ss_dssp HHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred HHHHHHhCCCCCCCCCccHHHHHHHHhCCCCC
Confidence 44555555 4999999999998886
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=6.61 E-value=1.1e+03 Score=22.35 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhhh
Q 012820 251 MLLAYVAYIFFQLK 264 (456)
Q Consensus 251 Ll~~Y~~yl~f~l~ 264 (456)
+++....|.+.+.+
T Consensus 417 ~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 417 LMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhhh
Confidence 33444455544433
No 9
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=6.23 E-value=1.6e+02 Score=22.20 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=14.2
Q ss_pred CcccchhhhhccchhHH
Q 012820 136 PTVGGLMNATCGNATEL 152 (456)
Q Consensus 136 ~~vGGll~a~~gn~pEl 152 (456)
+|+||+++.-+|..|+.
T Consensus 36 ~Tl~G~i~~~lg~iP~~ 52 (83)
T 3llb_A 36 DTVGGLVMSAFGHLPKR 52 (83)
T ss_dssp SBHHHHHHHHHSSCCCT
T ss_pred cCHHHHHHHHhCcCCCC
Confidence 58999999999988863
No 10
>2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein STR initiative, TB structural genomics consortium; 1.80A {Mycobacterium tuberculosis}
Probab=5.37 E-value=1.2e+03 Score=19.02 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=0.0
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHH
Q 012820 383 GVYMDLDFSLLETGSLAFTIIIVAFTLQDG-TSHYMKGVVLFLCYIA 428 (456)
Q Consensus 383 g~~~~l~f~~~~~~~l~lsvl~~~~~~~~g-~~~~~~G~~Ll~~Y~i 428 (456)
+.+|.|...-.|-..++.+..+.---..+| |.||-|.+.++..++.
T Consensus 18 ~~~M~LtPrE~dkLli~~Aa~LA~rR~aRGlkLN~pEAvAlIs~~il 64 (120)
T 2fvh_A 18 GSHMRLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHIL 64 (120)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred CCcCCcCchhHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHH
Done!