Query 012820
Match_columns 456
No_of_seqs 321 out of 2132
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 16:52:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012820.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012820hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 8.8 3.1E+02 0.022 23.3 6.7 37 400-436 36-76 (248)
2 d2o1ra1 d.145.1.4 (A:1-78) Hyp 7.8 60 0.0044 22.6 1.0 24 128-151 17-48 (78)
3 d2oara1 f.16.1.1 (A:10-118) Ga 7.6 39 0.0029 25.7 -0.1 31 348-378 1-37 (109)
4 d2rk5a1 d.145.1.4 (A:5-88) Put 7.3 61 0.0044 22.8 0.9 24 128-151 17-48 (84)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 7.1 2.5E+02 0.018 16.5 4.0 27 197-223 6-32 (37)
6 d2p3ha1 d.145.1.4 (A:5-102) Un 5.6 85 0.0062 22.9 0.9 17 136-152 36-52 (98)
7 d2r2za1 d.145.1.4 (A:5-88) Put 5.4 89 0.0065 21.9 0.9 17 136-152 36-52 (84)
8 d2plia1 d.145.1.4 (A:5-88) Unc 5.3 92 0.0067 21.9 0.9 25 128-152 22-54 (84)
9 d2nqwa1 d.145.1.4 (A:4-90) Hyp 4.1 1.2E+02 0.009 21.1 0.8 16 136-151 41-56 (87)
10 d2nwwa1 f.49.1.1 (A:12-416) Pr 3.9 1.1E+03 0.08 20.3 11.9 25 312-338 274-298 (405)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=8.77 E-value=3.1e+02 Score=23.26 Aligned_cols=37 Identities=3% Similarity=0.028 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCcc-c---hHHHHHHHHHHHHHHHHHHHc
Q 012820 400 FTIIIVAFTLQDGTS-H---YMKGVVLFLCYIAIAACFFVH 436 (456)
Q Consensus 400 lsvl~~~~~~~~g~~-~---~~~G~~Ll~~Y~i~~~~~~~~ 436 (456)
+.+++..+++...|. . -.-|++++.+|.+|-+.+-.+
T Consensus 36 ~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~ 76 (248)
T d2r6gf1 36 ILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIA 76 (248)
T ss_dssp HHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHheEEEEEccCccceehhhhHHHHHHHHHHHhheeEEE
Confidence 334445565544443 2 246889999999987765444
No 2
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}
Probab=7.80 E-value=60 Score=22.57 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=19.0
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 012820 128 EQIAYFTG--------PTVGGLMNATCGNATE 151 (456)
Q Consensus 128 e~la~~~G--------~~vGGll~a~~gn~pE 151 (456)
+++.+.+| +|+||+++--+|.+||
T Consensus 17 ~dl~~~l~~~l~~~~~~Ti~G~v~~~lg~iP~ 48 (78)
T d2o1ra1 17 RDLNKMFNWELDTEDARTFNGLILEHLEEIPD 48 (78)
T ss_dssp HHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred HHHHHHHCCCCCCccchHHHHHHHHHhCcCCC
Confidence 55666665 5899999999998886
No 3
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.57 E-value=39 Score=25.66 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=20.6
Q ss_pred HHhCCCccHHHHHhhHHHHHH------HhHHHHHHHH
Q 012820 348 AFKNKLDISLGVALGSATQIS------MFVVPLCVVI 378 (456)
Q Consensus 348 a~kg~~dlaig~~iGS~i~~~------l~vip~~vli 378 (456)
||-|-+|+|+|.++|++...+ -++.|+...+
T Consensus 1 arGNVidLAVgvIiG~AF~~iV~slV~diimPlIg~i 37 (109)
T d2oara1 1 ARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 37 (109)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhhc
Confidence 344557999999999986322 2466766554
No 4
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=7.30 E-value=61 Score=22.76 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=18.3
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 012820 128 EQIAYFTG--------PTVGGLMNATCGNATE 151 (456)
Q Consensus 128 e~la~~~G--------~~vGGll~a~~gn~pE 151 (456)
+++.+++| +|+||+++--+|.+|+
T Consensus 17 ~dl~~~l~~~l~~~~~dTlgG~v~~~lg~iP~ 48 (84)
T d2rk5a1 17 NDFNEYFETDLESDNVDTIAGFYLTGVGTIPS 48 (84)
T ss_dssp HHHHHHHTCCCCCTTCCBHHHHHHHHHCSCCC
T ss_pred HHHHHHhCCCcccccchhHHHHHHHHhCcCCC
Confidence 44555555 5999999999998885
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.12 E-value=2.5e+02 Score=16.54 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=16.4
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHH
Q 012820 197 EEQRYDRKQADVNSLLLLLGLLCQMLP 223 (456)
Q Consensus 197 ~~q~~~~~~a~~~~~ll~lav~~lllP 223 (456)
.+|......++.+..++++.++..++.
T Consensus 6 n~q~veLNrtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 6 NRQPVELNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp SCCCBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHHHHHHHHHH
Confidence 345555555667777777776665543
No 6
>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=5.57 E-value=85 Score=22.91 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=14.5
Q ss_pred CcccchhhhhccchhHH
Q 012820 136 PTVGGLMNATCGNATEL 152 (456)
Q Consensus 136 ~~vGGll~a~~gn~pEl 152 (456)
+|+||+++.-+|.+|+-
T Consensus 36 ~Tl~G~~~~~lg~iP~~ 52 (98)
T d2p3ha1 36 ETISGLLFDHANALLKT 52 (98)
T ss_dssp CBHHHHHHHHHCSCCCT
T ss_pred cCHHHHHHHHHCcCCCC
Confidence 58999999999998863
No 7
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}
Probab=5.42 E-value=89 Score=21.91 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=14.2
Q ss_pred CcccchhhhhccchhHH
Q 012820 136 PTVGGLMNATCGNATEL 152 (456)
Q Consensus 136 ~~vGGll~a~~gn~pEl 152 (456)
+|+||+++--+|..|+.
T Consensus 36 ~TigG~i~~~lg~iP~~ 52 (84)
T d2r2za1 36 DTMAGYLITALGTIPDE 52 (84)
T ss_dssp CBHHHHHHHHHSSCCCT
T ss_pred hhHHHHHHHHhCcCCCC
Confidence 58999999888888863
No 8
>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}
Probab=5.29 E-value=92 Score=21.87 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=18.8
Q ss_pred HHHHHHhC--------CcccchhhhhccchhHH
Q 012820 128 EQIAYFTG--------PTVGGLMNATCGNATEL 152 (456)
Q Consensus 128 e~la~~~G--------~~vGGll~a~~gn~pEl 152 (456)
+++.+.+| +|+||+++--+|.+|+.
T Consensus 22 ~dl~~~~~~~l~~~~~~TigG~i~~~l~~iP~~ 54 (84)
T d2plia1 22 EDINTFFGTEYSSEEADTIGGLVIQELGHLPVR 54 (84)
T ss_dssp HHHHHHHCCCCCCSSCCBHHHHHHHHHSSCCCT
T ss_pred HHHHHHhCCCCCccccHHHHHHHHHHhCccccC
Confidence 45566665 58999999988888863
No 9
>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}
Probab=4.07 E-value=1.2e+02 Score=21.14 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=13.8
Q ss_pred CcccchhhhhccchhH
Q 012820 136 PTVGGLMNATCGNATE 151 (456)
Q Consensus 136 ~~vGGll~a~~gn~pE 151 (456)
+|+||+++--+|.+||
T Consensus 41 ~Ti~G~i~~~lg~iP~ 56 (87)
T d2nqwa1 41 DTLSGLFLEIKQELPH 56 (87)
T ss_dssp SBHHHHHHHHHCSCCC
T ss_pred eeHHHHHHHHhCcccc
Confidence 5899999988888886
No 10
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.85 E-value=1.1e+03 Score=20.34 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=18.5
Q ss_pred hHHHhHhhhCCCccceeeehhhhccch
Q 012820 312 TIEAASDSWGISVSFISIILLPIVGNA 338 (456)
Q Consensus 312 si~~ia~~~gis~~~iGlillpi~tsl 338 (456)
+++. +|+.|+++...+.+ +|+|.+.
T Consensus 274 ~~~~-~~~~gv~~~i~~fv-lPlgati 298 (405)
T d2nwwa1 274 TMRV-AKEMGISEGIYSFT-LPLGATI 298 (405)
T ss_dssp HHHH-HHTTTCCTTTHHHH-TTTTSSS
T ss_pred HHHH-HHHcCCCcccccee-cccchhe
Confidence 3443 47899999998876 6888765
Done!