Query 012821
Match_columns 456
No_of_seqs 166 out of 301
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.0 0.0012 4E-08 56.0 6.7 71 185-255 32-103 (110)
2 2i68_A Protein EMRE; transmemb 96.7 0.0015 5.2E-08 57.7 5.0 71 185-255 32-103 (137)
3 2i68_A Protein EMRE; transmemb 77.0 2.1 7.2E-05 37.3 4.1 70 369-443 35-105 (137)
4 3b5d_A Multidrug transporter E 70.0 17 0.00059 29.9 8.0 70 369-443 35-105 (110)
5 1oo0_A MAGO nashi protein; RNA 42.5 5.1 0.00017 35.2 -0.1 21 48-68 26-46 (147)
6 2hac_A T-cell surface glycopro 5.5 2.9E+02 0.0099 18.2 1.6 25 213-237 6-30 (33)
7 3euj_B Chromosome partition pr 3.9 2E+02 0.0069 25.1 0.0 23 131-153 4-29 (152)
8 3goe_A DNA repair protein RAD6 3.9 3.7E+02 0.013 21.2 1.5 42 37-80 3-44 (82)
9 2iub_A CORA, divalent cation t 3.8 8.8E+02 0.03 23.4 4.7 16 430-445 345-360 (363)
10 2dzr_A General transcription f 3.8 2.1E+02 0.0073 23.4 0.0 40 29-76 29-74 (99)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.03 E-value=0.0012 Score=55.99 Aligned_cols=71 Identities=24% Similarity=0.210 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcchhHH-HHhcchhHHHHHHHHHHHhcCcccchhhhHHHHHhhheeeEEe
Q 012821 185 PFVAVGLLEALAAATGMAAGAILSGASI-PILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVA 255 (456)
Q Consensus 185 ~f~i~allD~l~~~L~~ia~~~ts~s~~-~mLrq~~Ip~T~llS~iFLkrRy~~~q~lGv~lVi~Gviivv~ 255 (456)
+.+....+..++-.+...++.+.|.+.- .+.++...+++++++++++|.+.+..|++|+.++++|+++...
T Consensus 32 ~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3445556677777777788899999965 5559999999999999999999999999999999999887644
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.70 E-value=0.0015 Score=57.68 Aligned_cols=71 Identities=24% Similarity=0.224 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcchh-HHHHhcchhHHHHHHHHHHHhcCcccchhhhHHHHHhhheeeEEe
Q 012821 185 PFVAVGLLEALAAATGMAAGAILSGA-SIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVA 255 (456)
Q Consensus 185 ~f~i~allD~l~~~L~~ia~~~ts~s-~~~mLrq~~Ip~T~llS~iFLkrRy~~~q~lGv~lVi~Gviivv~ 255 (456)
++++..++..++..+...++...|.+ .+.+.++...+++++++++|+|.+++..|++|++++++|++++..
T Consensus 32 ~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp --CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34566677888888888999999999 455559999999999999999999999999999999999988754
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=77.03 E-value=2.1 Score=37.33 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHH-HHhhhhhhhhhccccccccCCCCCCchhhHHHHHHHHHhhhhccCCC
Q 012821 369 LFVLVNMGFNISLLHLLKISSAIVSSLA-STFSVPISVYVFTLPLPYLGVASSLPTGFVAGAVILVMGLLIYSWTP 443 (456)
Q Consensus 369 lyii~ni~~N~~~~~v~K~~SA~~~~lv-~svr~pLsi~~f~l~~~~~G~~~~~~~~~liG~vilv~G~liYn~~~ 443 (456)
+.+++..+..++....+|+.+.....-+ ..+. |+.+.+++..+ +||. +++.+++|.++++.|+++-+..+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~-pv~~~l~g~l~--lgE~--ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVG-IVLISLLSWGF--FGQR--LDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHH-HHHHHHHHHHH--HC--------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH-HHHHHHHHHHH--hCCC--CCHHHHHHHHHHHHHHHHHhcCC
Confidence 4445555566666667787766655444 3433 44444444333 3554 77889999999999999998754
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=69.99 E-value=17 Score=29.92 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHH-HHhhhhhhhhhccccccccCCCCCCchhhHHHHHHHHHhhhhccCCC
Q 012821 369 LFVLVNMGFNISLLHLLKISSAIVSSLA-STFSVPISVYVFTLPLPYLGVASSLPTGFVAGAVILVMGLLIYSWTP 443 (456)
Q Consensus 369 lyii~ni~~N~~~~~v~K~~SA~~~~lv-~svr~pLsi~~f~l~~~~~G~~~~~~~~~liG~vilv~G~liYn~~~ 443 (456)
+.++.......+.....|+.+.-...-+ ..+. |+.+.+.+..+ +|| +.++.+++|..+++.|+++-+..+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~-~v~~~l~~~~~--~~E--~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVG-IVLISLLSWGF--FGQ--RLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHH-HHHHHHHHHHH--hCC--CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344445555555666777665554443 4444 33333333332 355 478899999999999999998765
No 5
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A
Probab=42.49 E-value=5.1 Score=35.23 Aligned_cols=21 Identities=48% Similarity=0.735 Sum_probs=16.8
Q ss_pred EeecCccccccCCCCCCCCch
Q 012821 48 LFRSSKRNYYHNNSNYKNNNV 68 (456)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~ 68 (456)
=+|+..|-.|-|||||||.+.
T Consensus 26 Efr~dG~lrYaNnSnYknd~~ 46 (147)
T 1oo0_A 26 EFRPDGKLRYANNSNYKNDTM 46 (147)
T ss_dssp EECTTSEEEEEEECCTTSSCC
T ss_pred EecCCCeEEEeccCCCcCCee
Confidence 356677778999999999864
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=5.47 E-value=2.9e+02 Score=18.16 Aligned_cols=25 Identities=16% Similarity=0.531 Sum_probs=16.5
Q ss_pred HHhcchhHHHHHHHHHHHhcCcccc
Q 012821 213 PILSQTFLVWQILLSIIFLGRRYRV 237 (456)
Q Consensus 213 ~mLrq~~Ip~T~llS~iFLkrRy~~ 237 (456)
-+|.+...+.-.++..+|+|-|+.+
T Consensus 6 YiLDgiL~iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 6 YLLDGILFIYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred eehHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566666666667777777777654
No 7
>3euj_B Chromosome partition protein MUKF; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_E*
Probab=3.92 E-value=2e+02 Score=25.07 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHhC---cCCChhHHHHHHH
Q 012821 131 NRVLYKLALV---PLKHYPFFLAQLA 153 (456)
Q Consensus 131 N~V~~K~~~~---~~f~yPff~~~~m 153 (456)
|+++....-+ ..|++||+++..-
T Consensus 4 NRvFsQRLRqSi~~Yfd~pW~Lt~A~ 29 (152)
T 3euj_B 4 NRVFGQRLRQSIQNYFSSPWLLYTAK 29 (152)
T ss_dssp --------------------------
T ss_pred hHHHHHHHHHHHHHhccCchhhhhcc
Confidence 5555554333 4688999987653
No 8
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=3.90 E-value=3.7e+02 Score=21.24 Aligned_cols=42 Identities=29% Similarity=0.285 Sum_probs=26.5
Q ss_pred ccccCCCCceeEeecCccccccCCCCCCCCchhhhhhhchhhhc
Q 012821 37 HHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAAAER 80 (456)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
||-.|.|- ++++||||...-+ -+--.|..++=+++|-..+++
T Consensus 3 ~~~~~~~~-~~~~~~~~~~dl~-f~I~~~t~v~kLi~ayc~~~~ 44 (82)
T 3goe_A 3 HHHHHKLI-TLLLRSSKSEDLR-LSIPVDFTVKDLIKRYCTEVK 44 (82)
T ss_dssp TTCCCCEE-EEEEEESSSCCEE-EEEETTSBHHHHHHHHHHHHT
T ss_pred ccchhHHH-HHhhhccCCCCeE-EEecCCCCHHHHHHHHHHHcC
Confidence 44456654 7999999953222 222346778889988776543
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=3.84 E-value=8.8e+02 Score=23.41 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=8.1
Q ss_pred HHHHHhhhhccCCCCC
Q 012821 430 VILVMGLLIYSWTPTA 445 (456)
Q Consensus 430 vilv~G~liYn~~~~~ 445 (456)
++++++.++|-+..++
T Consensus 345 ~m~~i~~~~~~~Fkrk 360 (363)
T 2iub_A 345 VMGVIAVIMVVYFKKK 360 (363)
T ss_dssp HHHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3444555566555443
No 10
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=3.78 E-value=2.1e+02 Score=23.37 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=26.8
Q ss_pred ccceecccccccC------CCCceeEeecCccccccCCCCCCCCchhhhhhhch
Q 012821 29 PVSCYLRDHHANQ------RLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAA 76 (456)
Q Consensus 29 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (456)
+|-+|-++...|+ -||.+|-||.+ ++|.-.+..||.+|+.
T Consensus 29 pV~VPY~~i~~np~av~V~GLPegIpFr~P--------~~ygi~~Le~IL~~~~ 74 (99)
T 2dzr_A 29 PVQVPYKRIKSNPGSVIIEGLPPGIPFRKP--------CTFGSQNLERILAVAD 74 (99)
T ss_dssp CCCCCHHHHHHCSSSEEEESCCTTCCSSCG--------GGSCHHHHHHHHHHTT
T ss_pred ceeCCHHHHhcCCCeEEEecCCCCCcccCC--------CcccHHHHHHHHHhcc
Confidence 4444555544443 57888877654 4677788999999854
Done!