Query 012821
Match_columns 456
No_of_seqs 166 out of 301
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 16:53:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012821.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012821hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rk8b_ d.232.1.1 (B:) Mago na 44.0 2.6 0.00019 34.6 0.4 20 49-68 24-43 (141)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 14.1 1.1E+02 0.0083 26.6 5.7 65 184-252 3-67 (248)
3 d2iuba2 f.17.3.1 (A:286-349) M 9.2 2.1E+02 0.015 19.0 4.7 47 397-443 13-61 (64)
4 d1q90a3 f.23.23.1 (A:248-292) 6.8 2.4E+02 0.017 18.1 3.5 29 268-296 4-32 (45)
5 d1vf5c3 f.23.23.1 (C:250-286) 6.3 2E+02 0.015 17.7 2.9 29 267-295 4-32 (37)
6 d2bvca2 d.128.1.1 (A:105-478) 3.9 1.4E+02 0.011 27.4 1.3 67 3-89 221-292 (374)
7 d1iwga8 f.35.1.1 (A:513-566,A: 3.7 9.4E+02 0.068 19.2 8.5 32 187-218 158-189 (222)
8 d1iwga7 f.35.1.1 (A:7-37,A:331 3.4 9.5E+02 0.069 18.8 10.8 42 187-228 140-183 (199)
9 d1vlba1 a.56.1.1 (A:81-193) Al 2.8 1.5E+02 0.011 22.7 0.2 13 69-81 63-75 (113)
10 d2j6ba1 d.321.1.1 (A:1-109) Af 2.4 1.7E+02 0.012 22.4 -0.0 17 37-53 78-94 (109)
No 1
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=44.00 E-value=2.6 Score=34.61 Aligned_cols=20 Identities=50% Similarity=0.818 Sum_probs=8.2
Q ss_pred eecCccccccCCCCCCCCch
Q 012821 49 FRSSKRNYYHNNSNYKNNNV 68 (456)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~ 68 (456)
+|+.-|-.|-|||||||.+.
T Consensus 24 fr~dG~lrYaNnSnYknd~~ 43 (141)
T d1rk8b_ 24 FRPDGKLRYANNSNYKNDTM 43 (141)
T ss_dssp ECTTCEEEEEC--------C
T ss_pred ecCCCeeeeecccCccchhh
Confidence 45566677899999999864
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=14.09 E-value=1.1e+02 Score=26.64 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=43.2
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhcchhHHHHhcchhHHHHHHHHHHHhcCcccchhhhHHHHHhhheee
Q 012821 184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII 252 (456)
Q Consensus 184 ~~f~i~allD~l~~~L~~ia~~~ts~s~~~mLrq~~Ip~T~llS~iFLkrRy~~~q~lGv~lVi~Gvii 252 (456)
.|++++|++++++-....... ..++ + .+--..++.+++.-++|+.||...++|+-=.++.+.+.+
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~--~~~~-~-~~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fv 67 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMY--AQGE-Y-LFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFV 67 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHH--GGGC-H-HHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH--Hcch-H-HHHHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHH
Confidence 467889999988766554322 2222 1 123355677888889999999999999865555555444
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=9.23 E-value=2.1e+02 Score=19.02 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=14.6
Q ss_pred HHhhhhhhhhh--ccccccccCCCCCCchhhHHHHHHHHHhhhhccCCC
Q 012821 397 STFSVPISVYV--FTLPLPYLGVASSLPTGFVAGAVILVMGLLIYSWTP 443 (456)
Q Consensus 397 ~svr~pLsi~~--f~l~~~~~G~~~~~~~~~liG~vilv~G~liYn~~~ 443 (456)
..+-.|++.+. |+.-+..+++.+..++.+++-.+.++++.++|-+..
T Consensus 13 t~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~f~ 61 (64)
T d2iuba2 13 ATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFK 61 (64)
T ss_dssp HHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444655553 232222223332233333333334445555554443
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.78 E-value=2.4e+02 Score=18.09 Aligned_cols=29 Identities=28% Similarity=0.170 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012821 268 GIFWSLLMIVSFLLQAADTVLKEVIFLDA 296 (456)
Q Consensus 268 ~iig~lLiilS~i~~A~~~V~eEk~fk~y 296 (456)
.+.|.+++..+-++.-+.-|+|-|-|.+-
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888999999998764
No 5
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.32 E-value=2e+02 Score=17.74 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012821 267 AGIFWSLLMIVSFLLQAADTVLKEVIFLD 295 (456)
Q Consensus 267 ~~iig~lLiilS~i~~A~~~V~eEk~fk~ 295 (456)
..+.|.+.+..+-++.-+.-|+|-|-+.+
T Consensus 4 ~Rv~gl~~F~~~v~laQi~lVlKKKQ~Ek 32 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQLMLILKKKQVEK 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888889999888765
No 6
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.89 E-value=1.4e+02 Score=27.36 Aligned_cols=67 Identities=27% Similarity=0.312 Sum_probs=41.6
Q ss_pred ccccccccccCCCccccCCCCCCCCCccceeccc-----ccccCCCCceeEeecCccccccCCCCCCCCchhhhhhhchh
Q 012821 3 SCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRD-----HHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAA 77 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (456)
.+||||..|..+|....=+. .||...+.++..- .++-+|+| ++- .| -|+.-|+-.
T Consensus 221 NSY~Rl~~~~~ap~~~~Wg~-~nR~~~iRi~~~~~~~~~~riE~R~~------da~------------aN-PYL~lAail 280 (374)
T d2bvca2 221 NSYKRLVPGYEAPINLVYSQ-RNRSACVRIPITGSNPKAKRLEFRSP------DSS------------GN-PYLAFSAML 280 (374)
T ss_dssp THHHHSSTTSSSCSBCCEEE-TCTTSSEEECCCCSCTTSCCEEECSC------CSS------------SC-HHHHHHHHH
T ss_pred chhhhcCCCCccceEEeecc-CccccceeeccccCCCccceEEecCC------Ccc------------cc-HHHHHHHHH
Confidence 57999999999887655544 5777666654321 23333433 111 11 377777777
Q ss_pred hhcccccccccc
Q 012821 78 AERSDGHEAAVG 89 (456)
Q Consensus 78 ~~~~~~~~~~~~ 89 (456)
++--+|-++...
T Consensus 281 aagl~Gi~~~l~ 292 (374)
T d2bvca2 281 MAGLDGIKNKIE 292 (374)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHhhhhhhhccc
Confidence 777788777654
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.68 E-value=9.4e+02 Score=19.20 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcchhHHHHhcch
Q 012821 187 VAVGLLEALAAATGMAAGAILSGASIPILSQT 218 (456)
Q Consensus 187 ~i~allD~l~~~L~~ia~~~ts~s~~~mLrq~ 218 (456)
.-|-+.-.+.+.+++..+...+++...++++.
T Consensus 158 ~~~i~~t~ltti~gf~pl~~~~~~g~~~~~~l 189 (222)
T d1iwga8 158 LRPILMTSLAFILGVMPLVISTGAGSGAQNAV 189 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSSCHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34556666677777777766665544444444
No 8
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.39 E-value=9.5e+02 Score=18.78 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhcchhHHHHhcchh--HHHHHHHHH
Q 012821 187 VAVGLLEALAAATGMAAGAILSGASIPILSQTF--LVWQILLSI 228 (456)
Q Consensus 187 ~i~allD~l~~~L~~ia~~~ts~s~~~mLrq~~--Ip~T~llS~ 228 (456)
.-+.+.-.+.+...+.++...+....+++++.. +...+++|.
T Consensus 140 g~~i~~s~lTt~~~f~~l~~~~~~~~~~~~~~g~~i~~gv~~s~ 183 (199)
T d1iwga7 140 QGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSV 183 (199)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666667777777766555666543 334444443
No 9
>d1vlba1 a.56.1.1 (A:81-193) Aldehyde oxidoreductase, domain 2 {Desulfovibrio gigas [TaxId: 879]}
Probab=2.83 E-value=1.5e+02 Score=22.72 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=8.8
Q ss_pred hhhhhhchhhhcc
Q 012821 69 IYIVASAAAAERS 81 (456)
Q Consensus 69 ~~~~~~~~~~~~~ 81 (456)
.-|++|+..++..
T Consensus 63 ~~I~~Av~~aa~~ 75 (113)
T d1vlba1 63 KPLVDAVMDAAAV 75 (113)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3688888776443
No 10
>d2j6ba1 d.321.1.1 (A:1-109) Afv3-109 {Acidianus filamentous virus 1 [TaxId: 235266]}
Probab=2.40 E-value=1.7e+02 Score=22.40 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=13.0
Q ss_pred ccccCCCCceeEeecCc
Q 012821 37 HHANQRLPTTLLFRSSK 53 (456)
Q Consensus 37 ~~~~~~~~~~~~~~~~~ 53 (456)
.++|+|||.|-++.++.
T Consensus 78 ~~L~~Rl~EG~Vl~t~e 94 (109)
T d2j6ba1 78 FMLKQRLPEGVVVKTTE 94 (109)
T ss_dssp EEESSCCCTTCCCCCHH
T ss_pred EEecccCCCCcccccHH
Confidence 46899999998776653
Done!