Query 012822
Match_columns 456
No_of_seqs 264 out of 1881
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:54:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 5.5E-47 1.9E-51 373.3 35.8 410 43-455 6-426 (460)
2 3mkt_A Multi antimicrobial ext 99.9 7.9E-21 2.7E-25 186.5 18.1 208 43-251 232-446 (460)
3 2k1k_A Ephrin type-A receptor 27.8 60 0.0021 18.5 2.9 18 227-244 14-31 (38)
4 2jwa_A Receptor tyrosine-prote 22.4 1.1E+02 0.0037 18.1 3.3 9 243-251 30-38 (44)
5 2ks1_B Epidermal growth factor 21.0 1.4E+02 0.0048 17.6 4.3 12 240-251 27-38 (44)
6 1pw4_A Glycerol-3-phosphate tr 18.2 5.3E+02 0.018 23.2 17.9 29 50-78 253-281 (451)
7 4hkr_A Calcium release-activat 17.8 4.1E+02 0.014 21.7 16.4 81 80-161 56-144 (214)
8 4gc0_A D-xylose-proton symport 16.4 6.2E+02 0.021 23.2 12.4 17 199-215 407-423 (491)
9 1pw4_A Glycerol-3-phosphate tr 10.7 8.6E+02 0.029 21.8 30.9 14 326-339 302-315 (451)
10 3o7q_A L-fucose-proton symport 10.7 8.5E+02 0.029 21.7 27.8 310 25-375 2-348 (438)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=5.5e-47 Score=373.30 Aligned_cols=410 Identities=22% Similarity=0.353 Sum_probs=376.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 012822 43 ASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRY 122 (456)
Q Consensus 43 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 122 (456)
..++..|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++.. +...+..|++.+..+.+++++|++|+
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~-~~~~~~~g~~~~~~~~is~~~g~~~~ 84 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSILFGVGLLMALVPVVAQLNGAGRQ 84 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHH-HHHHHHHHHHHHHGGGCTTTTSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 34678899999999999999999999999999999999999999999999988 77778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHHH
Q 012822 123 EMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAY 202 (456)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (456)
++.++.++.++.+..++++++.++..+.++++.+++.+++..+.+..|+++..++.++..+....++.+++.||++.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999988877677888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-h---CCccchhHHHHHHHHHHHHHHHHHHHHhcccccc-c-ccCCChhhHhhHHHHHHHH
Q 012822 203 ISAATLVLHLLLSWLVVYK-F---GAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKH-T-WTGFSVQAFSGICEFLKLS 276 (456)
Q Consensus 203 ~~~~~~~~~i~l~~~li~~-~---~~g~~g~~~a~~i~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 276 (456)
.++++.++|+++++++++. + ++|+.|+++++.+++.+..++.+++.+++++.++ + +.++...+++.+|++++++
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence 9999999999999999975 4 5899999999999999999998888877643322 1 1222233346789999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012822 277 GSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTS 356 (456)
Q Consensus 277 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~i~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 356 (456)
+|..+++....+.+..++.+++.+|+ .++++|++++++.++..++..+++++..|.+++++|++|.|++++..+++.+
T Consensus 245 ~p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~ 322 (460)
T 3mkt_A 245 FPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM 322 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999975 4467999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHH
Q 012822 357 ISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGVAVGCGWQAFVAYVNIACYYIVGI 436 (456)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 436 (456)
+...++++.++++.++++++.++|++|+++.+.+..++++++++.++++++.+..+++++.||+|.+++.++++.|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 402 (460)
T 3mkt_A 323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL 402 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHhh----cC-CCcceeec
Q 012822 437 PLGCLLGFK----FN-FGAKVKIR 455 (456)
Q Consensus 437 ~l~~~l~~~----~~-~G~~G~~~ 455 (456)
|+++++.+. ++ +|+.|+|.
T Consensus 403 ~l~~~l~~~~~~~~~~~G~~G~~~ 426 (460)
T 3mkt_A 403 PTGYILGMTNWLTEQPLGAKGFWL 426 (460)
T ss_dssp HHHHHHHHHHTSSCCSSHHHHHHH
T ss_pred HHHHHHHhhhhccccccCchhHHH
Confidence 999999987 66 79999873
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.86 E-value=7.9e-21 Score=186.52 Aligned_cols=208 Identities=15% Similarity=0.086 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 012822 43 ASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRY 122 (456)
Q Consensus 43 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 122 (456)
.+++..|++++.++|.+++++...+...+|+.+++++|++++|+|+++.++.+ +...+..+++++..|.+++++|++|+
T Consensus 232 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~-~~~~~~~~~~~a~~p~i~~~~g~~~~ 310 (460)
T 3mkt_A 232 PQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSS-LVFMFPMSIGAAVSIRVGHKLGEQDT 310 (460)
T ss_dssp STTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 34567789999999999999999999999999999999999999999999999 77789999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhHH
Q 012822 123 EMLGVYMQRATFVLLATGVPVMMV-YIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSA 201 (456)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (456)
|+.++..+.+..+...++++++++ ..+.+++..++..|++..+.+..++++.++..++.+++....+.+++.||+|.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 390 (460)
T 3mkt_A 311 KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIF 390 (460)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 999999999999999999998865 7888999998888888888899999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHh----hC-CccchhHHHHHHHHHHHHHHHHHHHHhc
Q 012822 202 YISAATL-VLHLLLSWLVVYK----FG-AGLIGASLVLSLSWYIIVGAQFAYILMS 251 (456)
Q Consensus 202 ~~~~~~~-~~~i~l~~~li~~----~~-~g~~g~~~a~~i~~~i~~~~~~~~~~~~ 251 (456)
+.++++. ++++++++++.+. .+ +|+.|+++++.+++.+..++..+.++|.
T Consensus 391 ~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 391 HRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 9999999999887 56 8999999999999999988876655543
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=27.84 E-value=60 Score=18.47 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=7.7
Q ss_pred chhHHHHHHHHHHHHHHH
Q 012822 227 IGASLVLSLSWYIIVGAQ 244 (456)
Q Consensus 227 ~g~~~a~~i~~~i~~~~~ 244 (456)
.|+.++.+.+-.+...+.
T Consensus 14 AGiVvG~v~gv~li~~l~ 31 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGIL 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 344444444444333333
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.45 E-value=1.1e+02 Score=18.10 Aligned_cols=9 Identities=11% Similarity=-0.311 Sum_probs=3.9
Q ss_pred HHHHHHHhc
Q 012822 243 AQFAYILMS 251 (456)
Q Consensus 243 ~~~~~~~~~ 251 (456)
....|++|+
T Consensus 30 ~~~~~~RRR 38 (44)
T 2jwa_A 30 VFGILIKRR 38 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHhheehh
Confidence 333455544
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=21.00 E-value=1.4e+02 Score=17.62 Aligned_cols=12 Identities=0% Similarity=-0.150 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhc
Q 012822 240 IVGAQFAYILMS 251 (456)
Q Consensus 240 ~~~~~~~~~~~~ 251 (456)
..+..+++++|+
T Consensus 27 i~~~~~~~~RRr 38 (44)
T 2ks1_B 27 VALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh
Confidence 333334444443
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=18.22 E-value=5.3e+02 Score=23.23 Aligned_cols=29 Identities=28% Similarity=0.317 Sum_probs=12.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Q 012822 50 LLVRLAAPAVFVYLINNLMSLSTRVFCGH 78 (456)
Q Consensus 50 ~~~~~~~p~~~~~~~~~~~~~i~~~~i~~ 78 (456)
.++...+..+...............++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (451)
T 1pw4_A 253 LLWYIAIANVFVYLLRYGILDWSPTYLKE 281 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333444433
No 7
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=17.84 E-value=4.1e+02 Score=21.72 Aligned_cols=81 Identities=14% Similarity=-0.008 Sum_probs=47.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh--------hcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012822 80 GNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQA--------YGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCK 151 (456)
Q Consensus 80 g~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~vs~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (456)
.+.-+..|+....+.- ....+..-+++-+.|-+-.. ..+...++.+.++...+.++..+++++.+.-+..-
T Consensus 56 p~~LLi~fav~Ttllv-~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall 134 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLV-AVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAIL 134 (214)
T ss_dssp ---CHHHHHHHHHHHH-HHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445778888777766 45555555555554444322 22345678899999999999988888776644444
Q ss_pred HHHHHcCCCH
Q 012822 152 PMLILLGEST 161 (456)
Q Consensus 152 ~i~~~~~~~~ 161 (456)
-++.++..+.
T Consensus 135 ~WVKF~~~~~ 144 (214)
T 4hkr_A 135 CWVKFYDLSR 144 (214)
T ss_dssp HHHHHTTTCH
T ss_pred heEEeecCCc
Confidence 4556665553
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=16.43 E-value=6.2e+02 Score=23.21 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 012822 199 PSAYISAATLVLHLLLS 215 (456)
Q Consensus 199 ~~~~~~~~~~~~~i~l~ 215 (456)
-.........+.+.+..
T Consensus 407 ~~g~~~~~~~~~~~i~~ 423 (491)
T 4gc0_A 407 ALAIAVAAQWLANYFVS 423 (491)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=10.70 E-value=8.6e+02 Score=21.75 Aligned_cols=14 Identities=7% Similarity=-0.128 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 012822 326 GFNAAASVRVSNEL 339 (456)
Q Consensus 326 ~i~~~~~p~~~~~~ 339 (456)
.++......+.+.+
T Consensus 302 ~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 302 IPGTLLCGWMSDKV 315 (451)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455555554
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=10.69 E-value=8.5e+02 Score=21.70 Aligned_cols=310 Identities=6% Similarity=-0.138 Sum_probs=0.0
Q ss_pred hhhhccccchhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc--ChhHHHHHHHHHHHHHHHHHHHH
Q 012822 25 LENVLSDTNLSCFKRLQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHL--GNLELAAASLGNSGIQLFAYGLM 102 (456)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~--g~~~~~~~~~~~~i~~~~~~~~~ 102 (456)
.+...+.+..+.........++..+.+.-...-.+...............+...+ ++++.+.......+...+...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~ 81 (438)
T 3o7q_A 2 GNTSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPA 81 (438)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHH
T ss_pred CcccccccccccccccchhhhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHH
Q 012822 103 LGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYA 182 (456)
Q Consensus 103 ~g~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 182 (456)
.-+. |+-..|+.+..+.....+..+.........+.... .....+.-...+.....
T Consensus 82 G~l~--------------dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~l~G~~~~~~~~~ 137 (438)
T 3o7q_A 82 GILM--------------KKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF----------LVGLFIIAAGLGCLETA 137 (438)
T ss_dssp HHHH--------------HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHH--------------HHhcchHHHHHHHHHHHHHHHHHHhccccccHHHH----------HHHHHHHHhhHHHhhhh
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhh-CCc--------------------------cchhHHHHHH
Q 012822 183 VNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKF-GAG--------------------------LIGASLVLSL 235 (456)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~-~~g--------------------------~~g~~~a~~i 235 (456)
...........+++.+.....+....+-.++...+..... +.+ .....+...+
T Consensus 138 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 217 (438)
T 3o7q_A 138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVA 217 (438)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCChhhHhhHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHhcC------CcHHHHH
Q 012822 236 SWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFL--KLSGSSAVMLCLETWYFQILVLIAGLL------DNPELAL 307 (456)
Q Consensus 236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~av 307 (456)
...+..+........+.+.+....+.+.+..+..++++ +.-+...+..+...............+ +.++..
T Consensus 218 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~- 296 (438)
T 3o7q_A 218 IVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF- 296 (438)
T ss_dssp HHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH-
T ss_pred HHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012822 308 DSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLALRHV 375 (456)
Q Consensus 308 ~~~~~~~~i~~~~~~i~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (456)
.........+...++......+.+.++++ +.+...........+.+....+.
T Consensus 297 ------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T 3o7q_A 297 ------AANYLTGTMVCFFIGRFTGTWLISRFAPH----------KVLAAYALIAMALCLISAFAGGH 348 (438)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHSCHH----------HHHHHHHHHHHHHHHHHHHCCHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHHHHcCCc
Done!