Query 012822
Match_columns 456
No_of_seqs 264 out of 1881
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 16:54:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012822.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012822hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 77.7 21 0.0015 30.8 18.4 28 223-250 406-433 (447)
2 d1nkzb_ f.3.1.1 (B:) Light-har 16.4 79 0.0058 16.7 4.0 34 343-376 7-40 (41)
3 d1pv7a_ f.38.1.2 (A:) Lactose 10.9 3.6E+02 0.026 21.3 16.6 7 224-230 376-382 (417)
4 d1lghb_ f.3.1.1 (B:) Light-har 10.7 1E+02 0.0073 16.7 2.4 32 343-374 10-41 (43)
5 d1ijdb_ f.3.1.1 (B:) Light-har 7.7 1.7E+02 0.012 15.2 3.7 31 343-373 8-38 (40)
6 d1jo5a_ f.3.1.1 (A:) Light-har 4.6 1.7E+02 0.012 16.2 1.4 33 343-375 15-47 (48)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 4.3 7.5E+02 0.055 19.0 6.2 58 185-242 96-154 (261)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 4.2 4.7E+02 0.034 16.5 8.9 17 269-285 70-86 (100)
9 d2yvxa3 f.57.1.1 (A:276-448) M 3.6 7.1E+02 0.052 17.7 6.9 35 112-146 62-98 (173)
10 d1j1va_ a.4.12.2 (A:) Chromoso 3.3 4.2E+02 0.031 16.6 3.0 34 321-354 38-71 (94)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=77.67 E-value=21 Score=30.80 Aligned_cols=28 Identities=14% Similarity=-0.021 Sum_probs=14.1
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHh
Q 012822 223 GAGLIGASLVLSLSWYIIVGAQFAYILM 250 (456)
Q Consensus 223 ~~g~~g~~~a~~i~~~i~~~~~~~~~~~ 250 (456)
+.|..+..+.......+..++......+
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566555555555555555544444443
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=16.40 E-value=79 Score=16.66 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012822 343 NPKAAAFSVVVVTSISFIISVVFAVIVLALRHVI 376 (456)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (456)
+.|+..+.+..+.+....+.+..=++.+...|++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4578888888899998888888777776666553
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=10.90 E-value=3.6e+02 Score=21.29 Aligned_cols=7 Identities=43% Similarity=0.619 Sum_probs=2.9
Q ss_pred CccchhH
Q 012822 224 AGLIGAS 230 (456)
Q Consensus 224 ~g~~g~~ 230 (456)
.|.....
T Consensus 376 ~g~~~~~ 382 (417)
T d1pv7a_ 376 IGFQGAY 382 (417)
T ss_dssp HCHHHHH
T ss_pred HCHHHHH
Confidence 3444433
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=10.73 E-value=1e+02 Score=16.74 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012822 343 NPKAAAFSVVVVTSISFIISVVFAVIVLALRH 374 (456)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (456)
+.++.++.+.+++.....+.+..=++.+...|
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566666777777666666666555555444
No 5
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=7.69 E-value=1.7e+02 Score=15.23 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012822 343 NPKAAAFSVVVVTSISFIISVVFAVIVLALR 373 (456)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (456)
+.|+.++.+..+.+....+.+..=++.+...
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~t 38 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLT 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Confidence 4577888888888888888777666555443
No 6
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.60 E-value=1.7e+02 Score=16.20 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012822 343 NPKAAAFSVVVVTSISFIISVVFAVIVLALRHV 375 (456)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (456)
+-++.++.+-.++.....+.++.=++.+...|+
T Consensus 15 EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566666666666666666665555555443
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.26 E-value=7.5e+02 Score=18.99 Aligned_cols=58 Identities=3% Similarity=-0.092 Sum_probs=33.2
Q ss_pred HHHHHHHH-HcCCchhHHHHHHHHHHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHH
Q 012822 185 FPIQKFLQ-AQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVG 242 (456)
Q Consensus 185 ~~~~~~l~-~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~i~~~ 242 (456)
-..+.++. +.++.|...+..-+...+.+......-+.+.+|-.+-+-++++++....+
T Consensus 96 H~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~i 154 (261)
T d3cx5c2 96 HMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAI 154 (261)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhc
Confidence 33444444 44455666565554444433333344444567888888888888876543
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.23 E-value=4.7e+02 Score=16.50 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=11.0
Q ss_pred HHHHHHHHhHHHHHHHH
Q 012822 269 ICEFLKLSGSSAVMLCL 285 (456)
Q Consensus 269 ~~~~~~~~~p~~~~~~~ 285 (456)
.-|+.-.-+|..+-..+
T Consensus 70 ~LEiiWTviP~lILi~l 86 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAI 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56777777787664443
No 9
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.62 E-value=7.1e+02 Score=17.68 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=20.2
Q ss_pred HHHhhhcCC--CcchHHHHHHHHHHHHHHHHHHHHHH
Q 012822 112 LCGQAYGAG--RYEMLGVYMQRATFVLLATGVPVMMV 146 (456)
Q Consensus 112 ~vs~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (456)
.+-|..+.+ +.++.++.+.+=...++..+..++++
T Consensus 62 i~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 62 LIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp HHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 45666777777666666666655543
No 10
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=3.34 E-value=4.2e+02 Score=16.56 Aligned_cols=34 Identities=3% Similarity=0.151 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012822 321 FMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVV 354 (456)
Q Consensus 321 ~~i~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~ 354 (456)
+.+..-......+.+++.+|.+|+.-+-+.+++.
T Consensus 38 ~yL~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kki 71 (94)
T d1j1va_ 38 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 71 (94)
T ss_dssp HHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHHH
Confidence 3334445556678899999888888777776653
Done!