Query 012823
Match_columns 456
No_of_seqs 115 out of 1181
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:40:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 6.7E-56 1.4E-60 446.4 33.1 397 38-451 57-465 (467)
2 KOG1304 Amino acid transporter 100.0 1.9E-53 4E-58 408.7 31.7 387 35-450 41-449 (449)
3 KOG1303 Amino acid transporter 100.0 4.9E-52 1.1E-56 406.4 29.9 397 36-453 33-437 (437)
4 PF01490 Aa_trans: Transmembra 100.0 8.2E-53 1.8E-57 422.1 -1.7 387 39-447 1-408 (409)
5 KOG1305 Amino acid transporter 100.0 3.4E-47 7.3E-52 370.7 25.5 404 38-454 3-409 (411)
6 PLN03074 auxin influx permease 100.0 4.9E-46 1.1E-50 372.9 32.7 385 35-454 40-455 (473)
7 KOG4303 Vesicular inhibitory a 100.0 2.2E-39 4.7E-44 293.4 6.6 388 36-454 112-518 (524)
8 COG0814 SdaC Amino acid permea 100.0 9.5E-33 2E-37 273.2 32.6 394 36-446 4-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 8.3E-24 1.8E-28 208.2 36.3 368 39-439 1-391 (394)
10 PRK10483 tryptophan permease; 99.9 4.2E-23 9.1E-28 201.1 34.9 376 36-443 6-403 (414)
11 PRK09664 tryptophan permease T 99.9 1.7E-22 3.6E-27 196.7 34.0 374 39-443 7-404 (415)
12 PRK15132 tyrosine transporter 99.9 8.2E-23 1.8E-27 200.1 30.9 370 41-443 3-392 (403)
13 TIGR00837 araaP aromatic amino 99.9 4.4E-23 9.6E-28 204.6 28.1 347 47-418 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 2E-21 4.3E-26 189.2 31.4 380 45-445 23-441 (443)
15 TIGR00814 stp serine transport 99.9 1.1E-19 2.4E-24 178.5 26.2 371 44-436 6-396 (397)
16 KOG1287 Amino acid transporter 99.7 1.3E-15 2.8E-20 148.8 21.9 372 35-425 8-393 (479)
17 PRK10655 potE putrescine trans 99.6 2.7E-12 5.8E-17 129.8 35.8 241 36-295 3-245 (438)
18 PRK10249 phenylalanine transpo 99.6 3.3E-12 7.1E-17 129.7 36.4 356 35-416 17-393 (458)
19 TIGR00912 2A0309 spore germina 99.6 4.1E-13 8.8E-18 132.2 27.5 340 39-415 1-351 (359)
20 TIGR00905 2A0302 transporter, 99.6 3.2E-12 7E-17 130.4 34.7 246 37-296 5-255 (473)
21 TIGR03810 arg_ornith_anti argi 99.6 7.5E-12 1.6E-16 127.5 35.3 360 39-418 1-380 (468)
22 TIGR00911 2A0308 L-type amino 99.6 2.7E-12 5.8E-17 132.0 31.7 250 35-298 38-294 (501)
23 PRK10644 arginine:agmatin anti 99.6 1.9E-11 4.1E-16 123.9 37.2 245 35-298 4-250 (445)
24 PRK10435 cadB lysine/cadaverin 99.6 8.8E-12 1.9E-16 125.8 32.8 243 36-298 2-246 (435)
25 PRK15049 L-asparagine permease 99.6 2.6E-11 5.6E-16 124.2 36.2 358 36-417 25-405 (499)
26 PRK11049 D-alanine/D-serine/gl 99.6 2.2E-11 4.7E-16 124.1 35.5 242 34-295 15-267 (469)
27 TIGR00909 2A0306 amino acid tr 99.6 3.6E-12 7.9E-17 128.6 28.6 301 38-353 2-309 (429)
28 PRK11021 putative transporter; 99.5 4.1E-11 8.8E-16 120.2 34.9 226 42-293 2-231 (410)
29 PRK11387 S-methylmethionine tr 99.5 5.4E-11 1.2E-15 121.4 36.0 244 36-298 11-265 (471)
30 PRK10238 aromatic amino acid t 99.5 3.3E-11 7.1E-16 122.3 33.7 355 36-417 9-385 (456)
31 PRK10746 putative transport pr 99.5 9.3E-11 2E-15 119.0 36.6 360 35-418 6-388 (461)
32 TIGR01773 GABAperm gamma-amino 99.5 4E-11 8.7E-16 121.8 33.1 241 36-296 9-258 (452)
33 TIGR00906 2A0303 cationic amin 99.5 3.7E-11 8.1E-16 124.3 32.2 371 36-416 25-409 (557)
34 PF13520 AA_permease_2: Amino 99.5 5.8E-11 1.2E-15 119.8 31.9 293 41-357 1-307 (426)
35 PRK10836 lysine transporter; P 99.5 5.2E-10 1.1E-14 114.7 38.7 243 36-298 12-264 (489)
36 PRK11357 frlA putative fructos 99.5 1.6E-10 3.6E-15 117.1 34.4 239 36-295 5-251 (445)
37 TIGR00913 2A0310 amino acid pe 99.5 8.4E-10 1.8E-14 113.0 38.8 237 38-293 1-251 (478)
38 TIGR00908 2A0305 ethanolamine 99.5 5.1E-10 1.1E-14 113.4 35.7 234 36-293 4-245 (442)
39 TIGR00930 2a30 K-Cl cotranspor 99.5 6.4E-11 1.4E-15 128.3 30.5 249 36-295 73-336 (953)
40 PF03845 Spore_permease: Spore 99.4 1.4E-10 2.9E-15 112.3 26.7 286 40-354 1-293 (320)
41 PRK10580 proY putative proline 99.4 2.7E-09 5.9E-14 108.5 37.5 239 36-294 6-254 (457)
42 PRK10197 gamma-aminobutyrate t 99.3 1.1E-08 2.4E-13 103.6 35.2 336 51-416 4-366 (446)
43 COG0531 PotE Amino acid transp 99.3 2.8E-08 6E-13 101.5 36.0 364 36-418 9-389 (466)
44 KOG3832 Predicted amino acid t 99.2 4.1E-10 9E-15 96.2 13.2 223 41-270 12-303 (319)
45 COG1113 AnsP Gamma-aminobutyra 99.2 4.3E-08 9.4E-13 95.1 26.9 356 36-417 10-388 (462)
46 TIGR03428 ureacarb_perm permea 99.1 4.1E-07 8.8E-12 93.1 34.8 258 36-299 10-273 (475)
47 TIGR00907 2A0304 amino acid pe 99.1 3.6E-07 7.8E-12 93.7 31.3 255 36-299 9-277 (482)
48 PRK15238 inner membrane transp 99.1 3.5E-06 7.7E-11 86.6 38.5 247 36-295 4-267 (496)
49 COG0833 LysP Amino acid transp 99.0 8.8E-07 1.9E-11 88.0 30.5 354 37-414 42-424 (541)
50 KOG1286 Amino acid transporter 99.0 5.6E-08 1.2E-12 99.2 21.4 366 36-414 27-419 (554)
51 TIGR00910 2A0307_GadC glutamat 99.0 7.5E-06 1.6E-10 84.3 35.5 234 38-292 3-247 (507)
52 TIGR03813 put_Glu_GABA_T putat 98.9 1.9E-05 4.1E-10 80.9 35.9 52 248-299 202-254 (474)
53 COG3949 Uncharacterized membra 98.8 6.2E-06 1.3E-10 76.8 25.7 102 43-145 5-109 (349)
54 TIGR00800 ncs1 NCS1 nucleoside 98.7 5.8E-05 1.3E-09 76.4 30.4 356 39-414 12-385 (442)
55 PRK11375 allantoin permease; P 98.6 0.0001 2.3E-09 75.1 31.4 322 69-414 57-399 (484)
56 PF00324 AA_permease: Amino ac 98.6 3.6E-07 7.7E-12 93.6 13.2 238 50-301 6-262 (478)
57 TIGR02119 panF sodium/pantothe 98.5 0.0011 2.3E-08 67.9 33.4 148 35-201 36-188 (471)
58 PRK09442 panF sodium/panthothe 98.4 0.0022 4.7E-08 65.8 34.8 148 35-201 37-189 (483)
59 PRK12488 acetate permease; Pro 98.4 0.0026 5.6E-08 66.2 35.6 147 35-202 63-212 (549)
60 PF00474 SSF: Sodium:solute sy 98.3 0.00095 2.1E-08 66.9 28.8 145 37-201 4-151 (406)
61 TIGR02711 symport_actP cation/ 98.3 0.0045 9.7E-08 64.5 33.7 145 36-201 64-211 (549)
62 COG1457 CodB Purine-cytosine p 98.3 0.0031 6.6E-08 62.5 29.3 265 106-416 85-360 (442)
63 TIGR00813 sss transporter, SSS 98.2 0.0032 6.8E-08 63.2 30.2 145 38-202 2-148 (407)
64 KOG1289 Amino acid transporter 98.2 0.0037 8.1E-08 62.6 29.6 63 238-300 250-313 (550)
65 COG0591 PutP Na+/proline sympo 98.2 0.0064 1.4E-07 62.3 32.4 110 36-145 35-149 (493)
66 TIGR02358 thia_cytX probable h 98.1 0.016 3.4E-07 57.6 31.3 300 69-412 26-328 (386)
67 TIGR00796 livcs branched-chain 97.9 0.025 5.4E-07 55.6 32.3 316 49-414 3-346 (378)
68 PRK09395 actP acetate permease 97.9 0.042 9.1E-07 57.3 35.3 147 35-201 65-213 (551)
69 COG1953 FUI1 Cytosine/uracil/t 97.9 0.035 7.6E-07 55.4 28.5 356 36-414 36-413 (497)
70 PRK11017 codB cytosine permeas 97.8 0.051 1.1E-06 54.3 31.3 203 68-300 38-244 (404)
71 PRK00701 manganese transport p 97.7 0.082 1.8E-06 53.3 31.2 51 89-140 82-132 (439)
72 TIGR03648 Na_symport_lg probab 97.7 0.1 2.2E-06 54.5 33.4 147 35-201 28-176 (552)
73 PRK15419 proline:sodium sympor 97.5 0.16 3.4E-06 52.5 32.5 146 35-201 36-191 (502)
74 PF02133 Transp_cyt_pur: Perme 97.5 0.003 6.5E-08 64.0 15.2 353 38-414 6-374 (440)
75 PRK10484 putative transporter; 97.5 0.19 4.1E-06 52.2 35.2 90 35-125 34-124 (523)
76 TIGR02121 Na_Pro_sym sodium/pr 97.5 0.18 3.9E-06 51.8 32.6 146 36-201 33-187 (487)
77 TIGR00835 agcS amino acid carr 97.4 0.18 3.9E-06 50.2 25.4 84 39-123 45-138 (425)
78 COG1914 MntH Mn2+ and Fe2+ tra 97.3 0.22 4.7E-06 49.5 26.5 81 363-443 323-408 (416)
79 PF02554 CstA: Carbon starvati 97.2 0.037 8.1E-07 53.2 17.7 105 40-144 51-156 (376)
80 COG4147 DhlC Predicted symport 96.7 0.7 1.5E-05 45.9 26.8 184 91-297 93-294 (529)
81 COG0733 Na+-dependent transpor 96.2 1.5 3.3E-05 43.5 22.7 53 230-282 204-257 (439)
82 PRK15015 carbon starvation pro 96.2 0.12 2.7E-06 53.2 14.0 99 45-143 87-186 (701)
83 KOG1288 Amino acid transporter 96.1 0.4 8.7E-06 49.5 16.9 56 242-297 296-352 (945)
84 COG1966 CstA Carbon starvation 95.5 1.7 3.8E-05 44.0 18.4 104 40-143 51-155 (575)
85 KOG2466 Uridine permease/thiam 95.5 1.9 4.2E-05 43.0 18.2 267 35-311 50-332 (572)
86 KOG2082 K+/Cl- cotransporter K 95.0 5.7 0.00012 41.9 21.0 108 37-145 111-222 (1075)
87 KOG2083 Na+/K+ symporter [Inor 94.9 0.053 1.2E-06 54.9 6.0 229 38-293 27-277 (643)
88 PF01566 Nramp: Natural resist 94.8 4.5 9.7E-05 39.7 21.3 62 82-144 23-84 (358)
89 TIGR00796 livcs branched-chain 92.6 1.4 3.1E-05 43.4 11.2 98 49-147 198-300 (378)
90 PF00209 SNF: Sodium:neurotran 92.1 17 0.00036 37.8 26.9 70 41-110 5-79 (523)
91 PF05525 Branch_AA_trans: Bran 91.7 16 0.00034 36.7 28.6 324 41-414 3-352 (427)
92 PRK15433 branched-chain amino 86.6 38 0.00082 34.1 29.0 329 42-414 9-355 (439)
93 PF05525 Branch_AA_trans: Bran 85.3 5.9 0.00013 39.7 9.4 99 50-148 205-307 (427)
94 PF01235 Na_Ala_symp: Sodium:a 81.1 63 0.0014 32.3 25.8 52 36-88 14-66 (416)
95 COG4145 PanF Na+/panthothenate 77.6 74 0.0016 31.2 27.0 110 36-147 36-152 (473)
96 PRK15433 branched-chain amino 75.2 24 0.00051 35.5 9.8 97 50-146 209-309 (439)
97 COG1114 BrnQ Branched-chain am 72.8 66 0.0014 32.0 11.8 99 50-148 207-309 (431)
98 TIGR00909 2A0306 amino acid tr 72.3 1.1E+02 0.0024 30.6 17.6 48 101-148 263-310 (429)
99 TIGR00906 2A0303 cationic amin 70.7 1.4E+02 0.0031 31.2 17.0 45 102-146 299-343 (557)
100 TIGR01197 nramp NRAMP (natural 69.3 1.3E+02 0.0027 30.0 27.6 83 48-134 11-96 (390)
101 PLN02680 carbon-monoxide oxyge 67.4 1E+02 0.0022 28.2 11.5 96 238-345 48-143 (232)
102 PHA02764 hypothetical protein; 66.6 1.2E+02 0.0027 29.0 22.2 88 36-128 9-103 (399)
103 COG1115 AlsT Na+/alanine sympo 64.8 1.6E+02 0.0035 29.6 24.2 327 36-400 58-422 (452)
104 KOG3659 Sodium-neurotransmitte 63.5 2E+02 0.0043 30.2 16.8 88 41-129 82-174 (629)
105 KOG1289 Amino acid transporter 62.4 1.2E+02 0.0026 31.3 11.7 49 98-146 321-369 (550)
106 PRK10263 DNA translocase FtsK; 49.5 3.2E+02 0.0068 31.8 13.2 27 271-297 20-46 (1355)
107 PF05805 L6_membrane: L6 membr 46.9 56 0.0012 28.8 5.7 65 388-452 43-117 (195)
108 KOG4812 Golgi-associated prote 45.4 40 0.00086 30.5 4.6 71 372-446 160-244 (262)
109 PF13520 AA_permease_2: Amino 44.4 3.3E+02 0.0072 27.0 12.6 46 104-149 260-305 (426)
110 COG0814 SdaC Amino acid permea 43.4 3.3E+02 0.0072 27.3 11.6 141 271-415 221-373 (415)
111 PF02028 BCCT: BCCT family tra 42.2 3E+02 0.0066 28.3 11.1 236 171-407 8-261 (485)
112 TIGR00907 2A0304 amino acid pe 42.1 3.9E+02 0.0085 27.2 16.6 46 102-147 289-335 (482)
113 PRK13183 psbN photosystem II r 41.3 33 0.00072 22.3 2.6 30 274-303 6-35 (46)
114 TIGR03810 arg_ornith_anti argi 40.6 4.1E+02 0.0088 27.0 12.3 45 104-148 266-310 (468)
115 PF12794 MscS_TM: Mechanosensi 39.3 3.7E+02 0.008 26.1 11.6 37 271-307 45-81 (340)
116 PF02468 PsbN: Photosystem II 37.6 32 0.00069 22.1 2.1 29 275-303 4-32 (43)
117 CHL00020 psbN photosystem II p 37.6 29 0.00062 22.2 1.8 29 275-303 4-32 (43)
118 KOG2349 Na+:iodide/myo-inosito 36.3 2.3E+02 0.005 29.8 9.1 90 35-126 41-132 (585)
119 PRK10644 arginine:agmatin anti 36.0 4.5E+02 0.0098 26.4 11.5 45 100-144 258-302 (445)
120 PRK10655 potE putrescine trans 35.0 4.8E+02 0.01 26.1 11.8 46 101-146 257-302 (438)
121 KOG1287 Amino acid transporter 34.4 2.5E+02 0.0053 28.8 8.8 38 105-143 276-313 (479)
122 KOG2592 Tumor differentially e 33.6 2.1E+02 0.0045 28.2 7.7 74 369-447 115-200 (426)
123 PF03169 OPT: OPT oligopeptide 33.5 2.4E+02 0.0053 30.0 9.3 77 36-114 349-427 (624)
124 PRK09928 choline transport pro 31.6 6.9E+02 0.015 26.9 20.0 105 37-141 89-218 (679)
125 TIGR00905 2A0302 transporter, 30.2 6E+02 0.013 25.8 11.9 48 101-148 266-314 (473)
126 TIGR03750 conj_TIGR03750 conju 30.1 2.8E+02 0.0061 22.0 8.7 47 58-104 35-81 (111)
127 cd08763 Cyt_b561_CYB561 Verteb 29.0 1.2E+02 0.0026 25.4 4.8 32 417-448 33-64 (143)
128 PHA02680 ORF090 IMV phosphoryl 28.2 2.6E+02 0.0057 21.0 5.8 64 246-310 17-81 (91)
129 PF03348 Serinc: Serine incorp 27.7 4.4E+02 0.0095 26.6 9.4 40 368-407 112-156 (429)
130 PF10716 NdhL: NADH dehydrogen 27.2 1.5E+02 0.0033 21.9 4.3 53 385-438 11-65 (81)
131 PF11990 DUF3487: Protein of u 27.1 3.4E+02 0.0073 22.0 8.4 62 39-101 19-81 (121)
132 TIGR00908 2A0305 ethanolamine 26.8 6.5E+02 0.014 25.2 14.6 46 101-146 259-306 (442)
133 PRK11021 putative transporter; 25.3 6.7E+02 0.015 24.8 10.8 46 102-147 246-291 (410)
134 PF00902 TatC: Sec-independent 24.8 3.8E+02 0.0082 24.0 7.8 34 320-353 59-92 (215)
135 PRK10435 cadB lysine/cadaverin 24.7 7.2E+02 0.016 24.9 12.5 46 100-145 254-299 (435)
136 PRK11387 S-methylmethionine tr 24.5 7.5E+02 0.016 25.1 11.2 47 101-147 274-320 (471)
137 TIGR00930 2a30 K-Cl cotranspor 24.1 1.1E+03 0.024 26.8 16.9 33 116-148 386-418 (953)
138 COG1114 BrnQ Branched-chain am 23.9 7.5E+02 0.016 24.8 30.3 124 273-414 227-354 (431)
139 PLN02351 cytochromes b561 fami 23.9 5.7E+02 0.012 23.5 11.8 75 263-346 73-147 (242)
140 PRK09928 choline transport pro 23.0 9.7E+02 0.021 25.8 15.3 81 273-353 138-227 (679)
141 PF05915 DUF872: Eukaryotic pr 23.0 4E+02 0.0086 21.3 7.5 67 41-107 39-112 (115)
142 PRK10921 twin-arginine protein 22.8 2.8E+02 0.0061 25.8 6.6 34 320-353 66-99 (258)
143 KOG1291 Mn2+ and Fe2+ transpor 22.7 8.3E+02 0.018 24.9 12.4 53 362-414 354-408 (503)
144 PF08019 DUF1705: Domain of un 22.5 4.5E+02 0.0098 22.1 7.4 17 401-417 72-88 (156)
145 TIGR02840 spore_YtaF putative 20.7 5E+02 0.011 23.1 7.6 59 36-94 121-179 (206)
146 TIGR00267 conserved hypothetic 20.4 1.3E+02 0.0029 25.8 3.7 31 38-68 84-114 (169)
147 cd08766 Cyt_b561_ACYB-1_like P 20.3 4.8E+02 0.01 21.8 6.9 73 265-345 32-104 (144)
148 PF11085 YqhR: Conserved membr 20.2 5.6E+02 0.012 22.1 7.2 64 53-128 47-112 (173)
149 COG5249 RER1 Golgi protein inv 20.1 4.6E+02 0.01 21.8 6.4 41 73-114 139-179 (180)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=6.7e-56 Score=446.41 Aligned_cols=397 Identities=22% Similarity=0.321 Sum_probs=315.8
Q ss_pred CCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHH
Q 012823 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGR 117 (456)
Q Consensus 38 ~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~ 117 (456)
-...+..++++|++|+++|+|+|++|++|+++||+.|++++++++.++.||.+++.++.++.+..+|+|++++++||+++
T Consensus 57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~ 136 (467)
T PTZ00206 57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGS 136 (467)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhh
Q 012823 118 ALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTS 197 (456)
Q Consensus 118 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 197 (456)
+++++++.+.++|.|++|+++.+|.++.+++... . .++.+.. +..+. +..++++++++|++++|++++++++|
T Consensus 137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~----~-~~~~~~~-~~~r~-~~~~i~~~i~lPLs~~r~i~~L~~~S 209 (467)
T PTZ00206 137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTN----A-PDFLKQK-SGNRL-LTSLMWLCFMLPLVIPRHIDSLRYVS 209 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----c-cchhhhc-cCcEE-eeeehhhhHhhhcccccchHHHHHHH
Confidence 9999999999999999999999999987765310 0 1111111 11222 23344566899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CC----CCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc
Q 012823 198 ALSVGLAIVFVVITAGVAIVKTIDGSISM---PC----LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT 270 (456)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~ 270 (456)
.+++. ++++.++.+. ++...++..+. .+ ..++........+.+.++|+++|||.||.+++++++|||||+
T Consensus 210 ~i~~~-~i~~~vi~iv--i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t 286 (467)
T PTZ00206 210 TIAVS-FMVYLVIVIV--VHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRS 286 (467)
T ss_pred HHHHH-HHHHHHhhhh--hhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccc
Confidence 99984 3333333221 12222221110 00 011111112234578899999999999999999999999865
Q ss_pred --chhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 012823 271 --QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLN 348 (456)
Q Consensus 271 --~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~ 348 (456)
|+.++...++.+++++|..+|++||+.||+++++|++.|+++.+ ++...+.++...+.+..+||++.+|+|+.
T Consensus 287 ~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~-----~~~~~v~~~~~~~~v~~sypL~~~p~r~~ 361 (467)
T PTZ00206 287 VGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVN-----EPAIMVGFVGVLVKLFVSYALLGMACRNA 361 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCC-----CchhhHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 88899999999999999999999999999999999999995432 45667888889999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhh---cCCCCcchhh
Q 012823 349 LDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRD---THGIATKNDR 425 (456)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~---~~~~~~~~~~ 425 (456)
+++.+.++.++ .+.+++...+..+...+.++|+++|+++.+++++||++++.++|++|+++|++. ++++..++++
T Consensus 362 i~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~ 439 (467)
T PTZ00206 362 LYDVIGWDARK--VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYY 439 (467)
T ss_pred HHHHhCCCccc--CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHH
Confidence 99887443322 233344444555666778999999999999999999999999999999999983 2222334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012823 426 LASWLMISLAVSSSTVAVSSDIYSIF 451 (456)
Q Consensus 426 ~~~~~i~~~g~~~~v~~~~~~i~~i~ 451 (456)
+.++.++++|+++.+.|||+++++.+
T Consensus 440 ~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 440 ISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHhheEEecchhHhhHHh
Confidence 78999999999999999999999976
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-53 Score=408.69 Aligned_cols=387 Identities=20% Similarity=0.316 Sum_probs=321.5
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCCHHHHH
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA------SKSATYSGVV 108 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~------~~~~~y~~l~ 108 (456)
.+.++..|..++..|+.|.++|+|+|++|+||+++||+.|.+..+++++++.||.+.+++|.++ .+.-+|++.+
T Consensus 41 ~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~ 120 (449)
T KOG1304|consen 41 RDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETA 120 (449)
T ss_pred ccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHH
Confidence 3456679999999999999999999999999999999999999999999999999999999862 3346788777
Q ss_pred HHH----------cchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHH
Q 012823 109 ADA----------FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTL 178 (456)
Q Consensus 109 ~~~----------~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (456)
+.+ +|+++|.+++..++++++|.|++|+++++++++++... .. +..+..+.+ +. +..
T Consensus 121 ~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~----------~~-~~~~s~~~~-i~-~~~ 187 (449)
T KOG1304|consen 121 ESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE----------HS-PGVLSVRLY-IL-IQL 187 (449)
T ss_pred HHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc----------cC-CCCccHHHH-HH-HHH
Confidence 665 48999999999999999999999999999999887751 11 111223333 32 345
Q ss_pred HHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhc
Q 012823 179 FVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHN 258 (456)
Q Consensus 179 ~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~ 258 (456)
...++++++|+++.|..+|.++.++ +++.+++..++..+... +..+.|.+. ++.++...+|+.+|||.++..
T Consensus 188 ~~~lll~~Ir~Lk~Lsp~Sl~Anv~----~~~g~~ii~~y~~~~~~-~~~~~~~~~---~~~~~~lf~GtaifafEGig~ 259 (449)
T KOG1304|consen 188 PPLLLLNLIRNLKILSPFSLFANVF----ILVGLAIIMYYLVQDLP-PTSDLPAVT---GWSGLPLFFGTAIFAFEGIGM 259 (449)
T ss_pred HHHHHHHHHHhhHHhhHHHHHHHHH----HHHHHHHHHHHHHhccC-Ccccccccc---chhhhHHHHHHHHHHhccceE
Confidence 5777888888877777777776642 33333344555555533 334444443 355566779999999999999
Q ss_pred hhHHHhhcCCCcchh---HHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 012823 259 IHPIENELKDPTQIK---SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLM 335 (456)
Q Consensus 259 ~~~i~~~m~~p~~~~---~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 335 (456)
+.|++++||+|++++ +++..+|.+++++|..+|++||++||+++++.++.|+|++ ++.+.+|+++++..+
T Consensus 260 VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~-------~l~~~Vkl~~ai~I~ 332 (449)
T KOG1304|consen 260 VLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQE-------ILSQTVKLLLAIAIF 332 (449)
T ss_pred EEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCcc-------HHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999984 899999999999999
Q ss_pred HhhhhhhhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhh
Q 012823 336 LVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRD 415 (456)
Q Consensus 336 ~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~ 415 (456)
++||++++|..+.+++.+.++-. .+.+++..+..|..+++.+.++|..+|+++.+++++|+++++.+++++|++++++.
T Consensus 333 ls~pLQ~yv~~eIi~~~i~~k~~-~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~ 411 (449)
T KOG1304|consen 333 LTYPLQFYVPIEIIEPGIRKKFS-ENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELIT 411 (449)
T ss_pred HcCchhhhhhHHHHHHhHHHhcC-cchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHH
Confidence 99999999999999987644433 22234445688999999999999999999999999999999999999999999997
Q ss_pred cCCC---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012823 416 THGI---ATKNDRLASWLMISLAVSSSTVAVSSDIYSI 450 (456)
Q Consensus 416 ~~~~---~~~~~~~~~~~i~~~g~~~~v~~~~~~i~~i 450 (456)
+++. ..+|+.+.+..++++|++.++.|||+++.|+
T Consensus 412 ~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 412 FYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred hcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 6543 4568899999999999999999999999875
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-52 Score=406.37 Aligned_cols=397 Identities=20% Similarity=0.303 Sum_probs=332.1
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCCHHHHHH
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA------SKSATYSGVVA 109 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~------~~~~~y~~l~~ 109 (456)
.++|+.|++++.++.+|.++|.|+|+||||++++||+.|++++++.++++.||.+++.+|.+. ++.++|+|+++
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~ 112 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ 112 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence 456779999999999999999999999999999999999999999999999999999999873 23467999999
Q ss_pred HHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccc
Q 012823 110 DAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRR 189 (456)
Q Consensus 110 ~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 189 (456)
++||+++++++.+++.+.++|+++.|.+..+|+++.+.++.+.+.. ... ...+ .++...+.+|++++|+
T Consensus 113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~---------~l~-~~~f-~iif~~i~~~~s~lp~ 181 (437)
T KOG1303|consen 113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN---------SLD-KQYF-IIIFGLIVLPLSQLPN 181 (437)
T ss_pred HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---------ccc-ceeh-hhhHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999988765333220 111 2223 3446679999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCC
Q 012823 190 VDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP 269 (456)
Q Consensus 190 l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p 269 (456)
+++++++|..+.+++..+..+.+..+.........+ ....+... +....++++|+++|+|.+|..+||++.+||+|
T Consensus 182 ~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~-~~~~~~~~---~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p 257 (437)
T KOG1303|consen 182 FHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAP-SGGYLDLG---TIPTVFTALGIIAFAYGGHAVLPEIQHTMKSP 257 (437)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCc-ccCcccCC---CCcchhhhhhheeeeecCCeeeeehHhhcCCc
Confidence 999999999999877777766655443322111111 11111111 11111799999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 012823 270 TQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNL 349 (456)
Q Consensus 270 ~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~ 349 (456)
++|+|++..++.+++.+|+..++.||++|||++++|++.|+.+. .++...+++++.++++.+++....|..+.+
T Consensus 258 ~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p------~~~~~~ani~i~~h~i~s~~i~a~pl~~~~ 331 (437)
T KOG1303|consen 258 PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPP------TWLIALANILIVLHLIGSYQIYAQPLFDVV 331 (437)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCc------hhHHHHHHHHHHHHHhhhhhhhhcchHHHH
Confidence 99999999999999999999999999999999999999999622 578889999999999999999999999999
Q ss_pred HHhcCCCCCC-CCCCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhhcCCCCcchhhHHH
Q 012823 350 DGLLFPYAIP-IAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLAS 428 (456)
Q Consensus 350 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~~~~~~~~~~~ 428 (456)
|+....++.. .......|.+.|..+++.+.++|..+|+|+++++++||+...++++++|+++|++.++.++...+++++
T Consensus 332 E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~ 411 (437)
T KOG1303|consen 332 EKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLN 411 (437)
T ss_pred HHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 9987533331 112344578889999999999999999999999999999999999999999999987776777788888
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhhcc
Q 012823 429 WLM-ISLAVSSSTVAVSSDIYSIFNG 453 (456)
Q Consensus 429 ~~i-~~~g~~~~v~~~~~~i~~i~~~ 453 (456)
+.. .++|++.++.+...++++++++
T Consensus 412 ~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 412 WVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 888 7999999999999999988753
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=8.2e-53 Score=422.11 Aligned_cols=387 Identities=29% Similarity=0.517 Sum_probs=322.0
Q ss_pred CCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCHHHHHHHHcch
Q 012823 39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA----SKSATYSGVVADAFGG 114 (456)
Q Consensus 39 ~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~----~~~~~y~~l~~~~~G~ 114 (456)
||.|.++++++++|+++|+|+|++|++|+++||+.|++++++++.++.||.+++.|+.++ ++..+|+|++++++||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 589999999999999999999999999999999999999999999999999999999874 5899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 012823 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (456)
++++++++++.+.++|.+++|++..+|.++++++....+ ...++. ...++..++++|++++|++++++
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-----------~~~~~~-~~~~i~~~i~~pls~~~~l~~l~ 148 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-----------LFISRY-VWIIIFALIVLPLSFLKNLKSLR 148 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc-----------cccccc-ccccccccccccccccchhhHHH
Confidence 999999999999999999999999999998887643221 011222 33344667999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc--ccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCcch
Q 012823 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPE--ISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQI 272 (456)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~ 272 (456)
+++.++.++....+.+.. +........+++..+. .....++.++++++|+++|+|.+|+++|++++|||+|+|+
T Consensus 149 ~~s~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~ 224 (409)
T PF01490_consen 149 YLSILGLFSIFYFIVIVV----IYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF 224 (409)
T ss_pred HHhhhhhhccceeeeeec----ceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc
Confidence 999999853332211111 1111111111111111 1223456789999999999999999999999999999987
Q ss_pred h---HHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 012823 273 K---SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNL 349 (456)
Q Consensus 273 ~---~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~ 349 (456)
+ ++...++.+++++|..+|+.||++||+++++|+++|++++ ++...++++++.++++.++|++.+|.++.+
T Consensus 225 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~------~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l 298 (409)
T PF01490_consen 225 KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPND------DVLIIIARILLVISLLLSYPLQLFPARNSL 298 (409)
T ss_pred cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCc------ccccccccccchhhhhhccccccchhHhhh
Confidence 7 9999999999999999999999999999999999999997 467789999999999999999999999999
Q ss_pred HHhcCCC-------CCCCCCCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhhcCCCCcc
Q 012823 350 DGLLFPY-------AIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATK 422 (456)
Q Consensus 350 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~~~~~ 422 (456)
++.+.++ ..+...++++|...|..+++.+.++|..+||++++++++|++++..++|++|+++|+|.+++++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~ 378 (409)
T PF01490_consen 299 ENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNS 378 (409)
T ss_pred hhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccc
Confidence 9998753 111223455678889999999999999999999999999999999999999999999977665433
Q ss_pred hhh-----HHHHHHHHHHHHHHHHHHHHHH
Q 012823 423 NDR-----LASWLMISLAVSSSTVAVSSDI 447 (456)
Q Consensus 423 ~~~-----~~~~~i~~~g~~~~v~~~~~~i 447 (456)
+++ .+.+..+++|+++.+.|+|+++
T Consensus 379 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 379 FGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred cceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 322 4578889999999999999875
No 5
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-47 Score=370.69 Aligned_cols=404 Identities=37% Similarity=0.613 Sum_probs=339.5
Q ss_pred CCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHH
Q 012823 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGR 117 (456)
Q Consensus 38 ~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~ 117 (456)
+++.|...+++|++|+++|+|++++|++|++.|.+.|++++.+++.++.++.+++.++.++.++.+|+++++..+|+.++
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~ty~~l~~~~~g~~g~ 82 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGERTYSSLGDLIFGKLGK 82 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCHHHHHHHHcCCCce
Confidence 56789999999999999999999999999999999999999999999999999999999988888999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhh
Q 012823 118 ALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTS 197 (456)
Q Consensus 118 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 197 (456)
....+.......| +++|++.++|.++.+... ...+++.+.+ |..|.+.+.+..+.++.|+++.|+++++++.|
T Consensus 83 ~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~-----~~~~~~~~~~-~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS 155 (411)
T KOG1305|consen 83 VDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRS-----LFLDEEGGSH-YLDRNFLILLVLLFIILPLSLLKNLDSLKYTS 155 (411)
T ss_pred eeehhhHHhhhcc-ceEEEEEEccccchhhhh-----cccccccccc-cccceeEeehHHHHHHHHHHHHHhhhhHHHHH
Confidence 6666666555555 699999999999855432 1112333333 45666655666788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc--chhHH
Q 012823 198 ALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT--QIKSI 275 (456)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~--~~~~~ 275 (456)
.+++.....++.++ +++........++..+...+...+.+.+.++|+++|+|.||+|+.++++|||+|+ |+.++
T Consensus 156 ~~s~~~~~~fv~~v----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v 231 (411)
T KOG1305|consen 156 ALSLASVVYFVVLV----VYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRV 231 (411)
T ss_pred HHHHHHHHHHHHHH----HHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHH
Confidence 99995444444333 3333332211122222222223336789999999999999999999999999998 58999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhcCC
Q 012823 276 VRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFP 355 (456)
Q Consensus 276 ~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~~~~~~~ 355 (456)
...+...+..+|...|.+||+.||+.+.+|++.+++++++....+......+..+.++++.++|+..+|+|.++++.+++
T Consensus 232 ~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~ 311 (411)
T KOG1305|consen 232 SNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFP 311 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998654444445689999999999999999999999999999887
Q ss_pred CCCC-CCCCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhhcCCCCcchhhHHHHHHHHH
Q 012823 356 YAIP-IAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISL 434 (456)
Q Consensus 356 ~~~~-~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~~~~~~~~~~~~~i~~~ 434 (456)
++.+ ..+++.|+.+++..++....+.|++.|+++.+.+++||+++..++||+|+++|++.+|+ +++++.+.+....+
T Consensus 312 ~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~ 389 (411)
T KOG1305|consen 312 YQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLIL 389 (411)
T ss_pred cCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHH
Confidence 7654 24678888999999999999999999999999999999999999999999999997776 78899999999999
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 012823 435 AVSSSTVAVSSDIYSIFNGV 454 (456)
Q Consensus 435 g~~~~v~~~~~~i~~i~~~~ 454 (456)
++...+.|++..++++..+.
T Consensus 390 ~~~~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 390 GVLLSIIGVAVMIYDLLAKN 409 (411)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988764
No 6
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=4.9e-46 Score=372.91 Aligned_cols=385 Identities=13% Similarity=0.065 Sum_probs=304.3
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh----hcC--C-------
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR----ASK--S------- 101 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~----~~~--~------- 101 (456)
....++.|..++.+++++..+|+|+|+||++|+++||+.|++.+++.+.++.||.+++.+++. +++ .
T Consensus 40 ~~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~ 119 (473)
T PLN03074 40 SLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHV 119 (473)
T ss_pred ecccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHH
Confidence 344578999999999999999999999999999999999999999999999999999988643 111 1
Q ss_pred CCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHh
Q 012823 102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVF 181 (456)
Q Consensus 102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (456)
.+|.|+++..+||+++.+..++..+++++.|+.|++..++.+..+-+ . ...+. +.. ++.++.
T Consensus 120 ~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~---------------~-~~~~~-~~~-i~~~v~ 181 (473)
T PLN03074 120 IQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND---------------N-LDKRT-WTY-IFGACC 181 (473)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC---------------C-cCCCe-EEe-ehHHHH
Confidence 25789999999999999999999999999999999988877643211 0 11222 222 244577
Q ss_pred hccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhH
Q 012823 182 LPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHP 261 (456)
Q Consensus 182 ~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~ 261 (456)
+|++++|++++++++|.+++.+++.....++..... ++..+. .+ .+...++..++.++++++|+|.+|..+|+
T Consensus 182 ~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~---~~~~~~---~~-~~~~~~~~~~f~~~~~i~faf~g~~v~~~ 254 (473)
T PLN03074 182 ATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALS---HGQVEG---VK-HSGPTKLVLYFTGATNILYTFGGHAVTVE 254 (473)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCC---CC-CCCchhHHHHHHHHHHHHHHhcccccHHH
Confidence 788899999999999999985433332222211111 221111 11 11123566788888999999999999999
Q ss_pred HHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcc--hhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhh
Q 012823 262 IENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTL--DDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFP 339 (456)
Q Consensus 262 i~~~m~~p~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~--~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p 339 (456)
++++||||+|+++....+...++..|+.+++.||++|||++. ++.+.|+|++ .....+++++.++.+.+||
T Consensus 255 I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~-------~~~~~~~~~~~i~~~~sy~ 327 (473)
T PLN03074 255 IMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS-------GWRDAAVILMLIHQFITFG 327 (473)
T ss_pred HHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc-------hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875 4567778764 3457888999999999999
Q ss_pred hhhhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhhcCCC
Q 012823 340 IVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGI 419 (456)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~~ 419 (456)
++..|..+.+|+....+ . .++...|+..|..+++.++++|..+|+|+.+++++||++++.++|++|+++|++.++++
T Consensus 328 l~~~p~~~~~e~~~~~~-~--~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~ 404 (473)
T PLN03074 328 FACTPLYFVWEKAIGVH-D--TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSA 404 (473)
T ss_pred HHHhhHHHHHHHHhccc-c--cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 99999999988875322 1 23444578889999999999999999999999999999999999999999999844331
Q ss_pred -------------Ccch--hhHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 012823 420 -------------ATKN--DRLASWLMISL-AVSSSTVAVSSDIYSIFNGV 454 (456)
Q Consensus 420 -------------~~~~--~~~~~~~i~~~-g~~~~v~~~~~~i~~i~~~~ 454 (456)
..+| ..+.++.++++ ++++.+.|+|+++.++++++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~ 455 (473)
T PLN03074 405 SARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQI 455 (473)
T ss_pred hhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhh
Confidence 2122 35889999975 55557899999999999886
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-39 Score=293.36 Aligned_cols=388 Identities=16% Similarity=0.224 Sum_probs=315.7
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCCCHHHH
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA--------SKSATYSGV 107 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~--------~~~~~y~~l 107 (456)
+.+.+.+-+|+..|..|++=|.=+++||+|...+||+ ++..++.++.++.||..++.+|.-. ..+++|-++
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHH
Confidence 3447899999999999999999999999999999997 9999999999999999999999753 247899999
Q ss_pred HHHHcchh-HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccc
Q 012823 108 VADAFGGA-GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS 186 (456)
Q Consensus 108 ~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 186 (456)
++..+++. |.+.+.+.+.+.+..+|+.|.++.+|.+..-+|+. ++ .+.-|. ++..+.++|..+
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~----sv-----------d~~sWm-~i~~a~LLpc~F 254 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL----SV-----------DKASWM-MITSASLLPCSF 254 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC----Cc-----------cccchh-hhhhHHHhhhHH
Confidence 99988776 55889999999999999999999999997766541 11 111123 335568999999
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhh
Q 012823 187 FRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTI-DGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENE 265 (456)
Q Consensus 187 ~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~ 265 (456)
.|+++....+|.+-.+.-+++=++.+ .|.+. .+++...+ .+-..+...+..++|+++|+|..|..+|.+...
T Consensus 255 Lk~Lk~VS~lSf~ct~sH~viN~i~v---~YCLs~~~dW~wsk----v~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN 327 (524)
T KOG4303|consen 255 LKDLKIVSRLSFFCTISHLVINLIMV---LYCLSFVSDWSWSK----VTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN 327 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhcccee----EEEEEEcccCceEEEEEEEeeeceeeccccccc
Confidence 88877776666665533222222222 23222 13333322 121223344556789999999999999999999
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHH
Q 012823 266 LKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSL 345 (456)
Q Consensus 266 m~~p~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~ 345 (456)
|++|+++...+.|+-....++-..+|..||++||+.+++.+++|+|+. -+...++++.++..++|||+-++..
T Consensus 328 M~~ps~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q-------sfk~~VN~fLV~KALLSYPLPfyAA 400 (524)
T KOG4303|consen 328 MKNPSQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ-------SFKILVNLFLVVKALLSYPLPFYAA 400 (524)
T ss_pred cCChhHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc-------chhhhhhHHHHHHHHHcCCchHHHH
Confidence 999999999999999999999999999999999999999999999984 4566888999999999999999999
Q ss_pred HHHHHHhcCCCCCCCC--------CCCcch-hhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhhc
Q 012823 346 RLNLDGLLFPYAIPIA--------FDNRRF-FAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDT 416 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~ 416 (456)
.+.+++-++..-.+.+ .+.+.| +.+|..++....++|+.+|.|..+++++|++++..++||.|+++|++.+
T Consensus 401 velLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik 480 (524)
T KOG4303|consen 401 VELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIK 480 (524)
T ss_pred HHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHH
Confidence 9999998764432211 111222 4677888999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012823 417 HGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNGV 454 (456)
Q Consensus 417 ~~~~~~~~~~~~~~i~~~g~~~~v~~~~~~i~~i~~~~ 454 (456)
++.....++.....++++|+.+.+-|.|-|..++++++
T Consensus 481 ~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~ 518 (524)
T KOG4303|consen 481 EKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAI 518 (524)
T ss_pred HHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHH
Confidence 88888889999999999999999999999999988764
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-33 Score=273.22 Aligned_cols=394 Identities=20% Similarity=0.237 Sum_probs=291.6
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHcc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSA--TYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~--~y~~l~~~~~G 113 (456)
..+++.+..+++.+++++++|+|+|++|++++..|++.+++++++.+.++.++.+++.|+..+.++. ++.+++++.+|
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G 83 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLG 83 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhC
Confidence 5567889999999999999999999999999999999999999999999999999999999876665 99999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
|+++++.++.+++.+++.+.+|.+..+|.+++.+++. ++... ..|....++ .+.++.++++.++...+
T Consensus 84 ~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~----------~~~~~-~~r~~~~li-f~~~~~~l~~~~~~~~l 151 (415)
T COG0814 84 KKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQ----------FGLNP-LPRKLGSLI-FALVLAFLSWLGTLAVL 151 (415)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhh----------cccCC-cchHHHHHH-HHHHHHHHHHhchhHHH
Confidence 9999999999999999999999999999998777531 11111 234444443 44577779999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCcc--
Q 012823 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQ-- 271 (456)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~-- 271 (456)
|+.+.+... .+.+.++. ..+...+.+...-...|... ...+..+..++|+++|||+||+++|++.+|||++++
T Consensus 152 k~ts~l~~~-~v~~~~~l---~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~ 226 (415)
T COG0814 152 KITSLLVFG-KVIYLVLL---VVYLIPHWNPANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKA 226 (415)
T ss_pred HHHHHHHHH-HHHHHHHH---HHHHhcccCHHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHH
Confidence 999998874 33332222 22322221111111222111 245677889999999999999999999999998884
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCCCCCCCC-------CcccHHHHHHHHHHHHHHHHhhhhhhhH
Q 012823 272 IKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGI-------PYSSLLDDVVRVSYGIHLMLVFPIVFFS 344 (456)
Q Consensus 272 ~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~s~p~~~~~ 344 (456)
.+|+...+..+..++|..+++++|..+|+.+.++++++.++++.. ...+......++...+....|+--....
T Consensus 227 ~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg 306 (415)
T COG0814 227 VRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLG 306 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhh
Confidence 999999999999999999999999999999999999999876411 0112233344444444444444444444
Q ss_pred HHHHHHHhcCCCCCC--CCCC-CcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhhcCCCCc
Q 012823 345 LRLNLDGLLFPYAIP--IAFD-NRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIAT 421 (456)
Q Consensus 345 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~~~~ 421 (456)
.++..++.+.+++.+ +... ..............+...+...+..+.+++.+|+..+..+.++.|...+.|....+..
T Consensus 307 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~ 386 (415)
T COG0814 307 LFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVY 386 (415)
T ss_pred HHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeec
Confidence 455555554331111 1111 1223344556667777888888899999999999999999999999988875544333
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 012823 422 KNDRLASWLMISLAVSSSTVAVSSD 446 (456)
Q Consensus 422 ~~~~~~~~~i~~~g~~~~v~~~~~~ 446 (456)
+.++...++++++|+.......++.
T Consensus 387 ~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 387 GGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3333688888899988887776644
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=8.3e-24 Score=208.15 Aligned_cols=368 Identities=17% Similarity=0.214 Sum_probs=255.5
Q ss_pred CCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcchhHH
Q 012823 39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGGAGR 117 (456)
Q Consensus 39 ~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~ 117 (456)
++.+.+++++.+.++++|+|+|+||.+..++|++.+++.+++++.++.++..++.|...+ ++..++.+++++.+||+++
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 457889999999999999999999999999999999999999999999999999998754 4688999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccc--ccccchhhh
Q 012823 118 ALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS--FRRVDSLRY 195 (456)
Q Consensus 118 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~l~~ 195 (456)
++..+...+..++.+++|....++.+++.+++... .+ ...+. ...+..++...+.. .|-.++...
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-~~----------~~~~~--~~~~f~~i~~~iv~~g~~~v~~~n~ 147 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG-TD----------LSPWL--SSLLFTIIFGGIVYFGTKAVDRINR 147 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC-CC----------CcHHH--HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999877753211 00 01111 11111112222222 222333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcC-CCcchhH
Q 012823 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQIKS 274 (456)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~-~p~~~~~ 274 (456)
.-+...+.++ ..++ .+ .. .+++.+......+...++.....++|+.++||..|+.+|++.+.++ |++|.+|
T Consensus 148 ~lv~~~i~~~-~~l~-----~~-~~-p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ 219 (394)
T PF03222_consen 148 VLVFGMIISF-IILV-----VY-LI-PHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRK 219 (394)
T ss_pred HHHHHHHHHH-HHHH-----HH-Hh-hhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHH
Confidence 3333321111 1111 11 11 1122221111111224567788999999999999999999999998 5558999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCC-----------Ccch--hhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhh
Q 012823 275 IVRTSITLCSTVYITTSFFGLLLFGD-----------RTLD--DVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIV 341 (456)
Q Consensus 275 ~~~~s~~i~~~~Y~~~g~~gy~~fG~-----------~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~ 341 (456)
++..+..+..++|+..-+..-..-.. +..+ ..+.+...+ ........++..+.+.+||--.
T Consensus 220 ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~i~~~~~~fa~~Ai~TSFlGv 293 (394)
T PF03222_consen 220 AIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGS------PWISILGSIFAFFAIATSFLGV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCC------cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875554332111 1111 122222221 4566778889999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCC-hHHHHHhhchhhhhhHHHhhhhhHHhhhcCCCC
Q 012823 342 FFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPS-IWDAFQFTGATAAVSVGFIFPAAIALRDTHGIA 420 (456)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~-~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~~~ 420 (456)
...++|.+.+.+..++. ..+|........+++.++|...|+ |....++.| ....++..++|+++.+|.|+++.
T Consensus 294 ~lgl~d~l~d~~k~~~~-----~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 294 YLGLFDFLADLFKLKNN-----SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHHHHHHHcCCcc-----ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 99999999998754222 222343445667888899998876 778999999 89999999999999999665433
Q ss_pred cc-----hhhHHHHHHHHHHHHHH
Q 012823 421 TK-----NDRLASWLMISLAVSSS 439 (456)
Q Consensus 421 ~~-----~~~~~~~~i~~~g~~~~ 439 (456)
++ ..+.....++++|++..
T Consensus 368 ~~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 368 KQPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred CCCeEEeCcHHHHHHHHHHHHHHH
Confidence 22 23455555555555443
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.93 E-value=4.2e-23 Score=201.11 Aligned_cols=376 Identities=15% Similarity=0.134 Sum_probs=261.4
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcch
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGG 114 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~ 114 (456)
.++++.+.+.++..+.++++|+|+|++|.+-++.|+..+++++++++.++.||+.++.|...+ ++..++.+++++.+||
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~ 85 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGK 85 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCh
Confidence 456788999999999999999999999999999999999999999999999999999998764 5667899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccc--ccccch
Q 012823 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS--FRRVDS 192 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~ 192 (456)
+|+++..+...+..++.+.+|+...++.+.+.+++. . .+. .+. ...+++.++...+.+ .|..++
T Consensus 86 ~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~-~~i-----------~~~-~~~llF~~~~~~iv~~gt~~vd~ 151 (414)
T PRK10483 86 GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-S-LNV-----------PAR-AAGFGFALLVAFVVWLSTKAVSR 151 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-C-CCC-----------cHH-HHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999999999999999998776531 0 011 011 111122222222222 234445
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--CCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCC-C
Q 012823 193 LRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPC--LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKD-P 269 (456)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~-p 269 (456)
.+..-+.+.+.+.+.. + ..... +.+.+. ..+ ......+.....++|++++||+.|+++|++.+.+++ +
T Consensus 152 ~n~~l~~~~i~~f~~~-~------~~l~~-~i~~~~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~ 222 (414)
T PRK10483 152 MTAIVLGAKVITFFLT-F------GSLLG-HVQPATLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDP 222 (414)
T ss_pred HHHHHHHHHHHHHHHH-H------HHHHh-hcCHHHHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCH
Confidence 5544444442222111 1 11111 111111 011 112223455778999999999999999999999985 4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhhhcCCCc-------c---hhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhh
Q 012823 270 TQIKSIVRTSITLCSTVYITTSFFGLLLFGDRT-------L---DDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFP 339 (456)
Q Consensus 270 ~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~-------~---~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p 339 (456)
+|.+|++..+..+..++|+..-......-+++. . +..++.+.+..+ +..+.....++..+.+.+||-
T Consensus 223 ~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~---~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 223 KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLN---SRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999997766655443211 0 111122222111 134556778888889999999
Q ss_pred hhhhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCC-hHHHHHhhchhhhhhHHHhhhhhHHhhhcCC
Q 012823 340 IVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPS-IWDAFQFTGATAAVSVGFIFPAAIALRDTHG 418 (456)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~-~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~ 418 (456)
-....++|.+.+.+..+++. . .|...-...++++.++|...|+ |-..+++.|.. ..++..++|+++.+|.||+
T Consensus 300 Gv~LGL~d~l~D~~k~~~~~--~---~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 300 GVTLGLFDYLADLFGFDDSA--M---GRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHHHhCCCCcc--c---cceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 99999999999987654431 1 1222233566899999999887 88899999976 6677789999999997754
Q ss_pred -CCcc----hhhHHHHHHHHHHHHHHHHHH
Q 012823 419 -IATK----NDRLASWLMISLAVSSSTVAV 443 (456)
Q Consensus 419 -~~~~----~~~~~~~~i~~~g~~~~v~~~ 443 (456)
..+. -.+...+..+++|+...+.-.
T Consensus 374 ~~~~~y~v~Gg~~~l~~~~~~g~~~i~~~i 403 (414)
T PRK10483 374 FGSPKFRVWGGKPMIVLILLFGVGNALVHI 403 (414)
T ss_pred CCCCCceecCCHHHHHHHHHHHHHHHHHHH
Confidence 1111 234444566666665554433
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.93 E-value=1.7e-22 Score=196.68 Aligned_cols=374 Identities=13% Similarity=0.091 Sum_probs=255.8
Q ss_pred CCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcchhHH
Q 012823 39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGGAGR 117 (456)
Q Consensus 39 ~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~ 117 (456)
+|.+...++..+.++++|+|+|++|.+-++.|+..+++++++++.++.||+.++.|...+ ++..++.+++++.+||+|+
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~ 86 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWN 86 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHH
Confidence 444778899999999999999999999999999999999999999999999999998764 4677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccc--ccccchhhh
Q 012823 118 ALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS--FRRVDSLRY 195 (456)
Q Consensus 118 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~l~~ 195 (456)
++..+...+..++.+++|+...++.+.+.+++... .+. +.+ ...++..++..++.+ .|..+..+.
T Consensus 87 ~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~-~~i----------~~~--~~~llF~~~~~~~v~~gt~~vd~~nr 153 (415)
T PRK09664 87 IISGITVAFVLYILTYAYISANGAIISETISMNLG-YHA----------NPR--IVGICTAIFVASVLWISSLAASRITS 153 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc-CCC----------cHH--HHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 99999999999999999999999999777642100 000 111 111122223333222 233444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC--CCccccc-chhhhHHHHhhhhhhhhhhhhchhHHHhhcCCC-cc
Q 012823 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCL--LPEISKQ-ASFWKLFTTFPVLVTAYICHHNIHPIENELKDP-TQ 271 (456)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~-~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p-~~ 271 (456)
.-+.+.+++. .. .+ .... .+.+.+.. .+..... ..+.....++|++++||+.|+++|++.+.+++. +|
T Consensus 154 ~l~~~~ii~f-~~-~~-----~~l~-~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~ 225 (415)
T PRK09664 154 LFLGLKIISF-VI-VF-----GSFF-FQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDK 225 (415)
T ss_pred HHHHHHHHHH-HH-HH-----HHHh-hcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHH
Confidence 4443332111 11 11 1111 11111111 1111100 113347779999999999999999999999855 58
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhh-----------cCCCcchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhh
Q 012823 272 IKSIVRTSITLCSTVYITTSFFGLLL-----------FGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPI 340 (456)
Q Consensus 272 ~~~~~~~s~~i~~~~Y~~~g~~gy~~-----------fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~ 340 (456)
.+|++..+..+..++|+..-.+.... -|+++.+. ...+.++ ..+.++.....++..+.+.+||--
T Consensus 226 ~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l-~~s~~~~---~~~~~i~~~~~~Fa~~Ai~TSFlG 301 (415)
T PRK09664 226 LIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL-VKSFLGT---KQHGIIEFCLLVFSNLAVASSFFG 301 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH-HHHHHhh---ccChHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999997754443321 22222221 1111111 012456677888888999999999
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCC-hHHHHHhhchhhhhhHHHhhhhhHHhhhcCC-
Q 012823 341 VFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPS-IWDAFQFTGATAAVSVGFIFPAAIALRDTHG- 418 (456)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~-~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~- 418 (456)
....++|.+.+.+..++++ . .|...-...++++.+++...|+ |-..+++.|.. ..++.-++|+++-+|.|++
T Consensus 302 v~LGL~D~l~D~~~~~~~~--~---~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~ 375 (415)
T PRK09664 302 VTLGLFDYLADLFKIDNSH--G---GRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKF 375 (415)
T ss_pred HHHHHHHHHHHHhCCCCcc--c---cceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 9999999999987555432 1 1222233566899999999998 88899999986 5688889999999997754
Q ss_pred CC-c---chhhHHHHHHHHHHHHHHHHHH
Q 012823 419 IA-T---KNDRLASWLMISLAVSSSTVAV 443 (456)
Q Consensus 419 ~~-~---~~~~~~~~~i~~~g~~~~v~~~ 443 (456)
.. . ...+...+..+++|++..+.-.
T Consensus 376 ~~~~y~v~GG~~~l~~~~~~g~~ii~~~~ 404 (415)
T PRK09664 376 PNQMFTVWGGNLIPAIVILFGITVILCWF 404 (415)
T ss_pred CCCCceeeCCHHHHHHHHHHHHHHHHHHH
Confidence 11 1 2356677777777776665543
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.93 E-value=8.2e-23 Score=200.09 Aligned_cols=370 Identities=17% Similarity=0.189 Sum_probs=256.8
Q ss_pred ccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcchhHHHH
Q 012823 41 ASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGGAGRAL 119 (456)
Q Consensus 41 ~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~ 119 (456)
.+.+.+++.+.+|++|+|+|+||.+..+.|++.+++++++++.+..|+.+++.|...+ ++..++.+++++.+||+++++
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 3778899999999999999999999999999999999999999999999999997654 446789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccc--ccccchhhhhh
Q 012823 120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS--FRRVDSLRYTS 197 (456)
Q Consensus 120 ~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~l~~~s 197 (456)
..+...+..+..+.+|....++.+...+++ +.+.+ .+... ...+... +.....+ .|..++....-
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~----------~~~~~-i~~~~-~~l~F~~-~~~~iv~~g~~~v~~~n~~L 149 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISD----------WTGIS-MSPTA-GVLLFTL-VAGGVVCVGTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHH----------hccCC-CChHH-HHHHHHH-HHHHHHhccHHHHHHHHHHH
Confidence 999999999999999999988888665532 11111 01111 1111111 1111222 12333343333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCC-cchhHHH
Q 012823 198 ALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP-TQIKSIV 276 (456)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p-~~~~~~~ 276 (456)
+...+..+ .... .... .+++.++... .+...+ ....++|++++||+.|+++|++.+.+++. +|.+|++
T Consensus 150 ~~~~ii~~--~~~~-----~~l~-p~~~~~~L~~-~~~~~~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i 218 (403)
T PRK15132 150 FSAKIIFL--VVML-----ALMM-PHIHKVNLLT-LPLQQG--LALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVF 218 (403)
T ss_pred HHHHHHHH--HHHH-----HHHH-HhcCHHHHhc-CCcccc--HHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHH
Confidence 33332111 1111 1111 1222221110 000011 36788999999999999999999999855 5899999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCcc----------hhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 012823 277 RTSITLCSTVYITTSFFGLLLFGDRTL----------DDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLR 346 (456)
Q Consensus 277 ~~s~~i~~~~Y~~~g~~gy~~fG~~~~----------~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~ 346 (456)
..+..+..++|+..-......-+.+.- +++++.+.+..+ ..++.....+...+.+.+||--.....+
T Consensus 219 ~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~~fa~~Ai~TSFlGv~lgl~ 295 (403)
T PRK15132 219 IIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVA---SPHVELAVHLFADLALATSFLGVALGLF 295 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHcc---ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887766553311 123333322111 1456677888888999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCC-hHHHHHhhchhhhhhHHHhhhhhHHhhhcCCC--Ccch
Q 012823 347 LNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPS-IWDAFQFTGATAAVSVGFIFPAAIALRDTHGI--ATKN 423 (456)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~-~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~~--~~~~ 423 (456)
|.+.+.+..++++ ..|.......++++.++|...|+ |....++.|. ...++.+++|+++.+|.|+++ .+.+
T Consensus 296 d~l~d~~~~~~~~-----~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~ 369 (403)
T PRK15132 296 DYLADLFQRRNTV-----GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYR 369 (403)
T ss_pred HHHHHHHccCccc-----cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCcc
Confidence 9999987543321 11333445777899999998887 5667788775 578899999999999966542 1333
Q ss_pred ---hhHHHHHHHHHHHHHHHHHH
Q 012823 424 ---DRLASWLMISLAVSSSTVAV 443 (456)
Q Consensus 424 ---~~~~~~~i~~~g~~~~v~~~ 443 (456)
.+...+..+.+|++..+.-.
T Consensus 370 v~gg~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 370 VKGGRPALALVFLCGIAVIGIQF 392 (403)
T ss_pred CCCChHHHHHHHHHHHHHHHHHH
Confidence 66778888888877766543
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.92 E-value=4.4e-23 Score=204.60 Aligned_cols=347 Identities=17% Similarity=0.166 Sum_probs=242.8
Q ss_pred HHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcchhHHHHHHHHHH
Q 012823 47 VFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAGRALLQVCIV 125 (456)
Q Consensus 47 ~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~~~~~~~~ 125 (456)
+...+++++|+|+|++|.++.+.|+..+++.+++.+.++.++...+.|...+. +..++.+++++.+||+++++..+...
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999987654 57899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhhHHHHHHHH
Q 012823 126 VNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAI 205 (456)
Q Consensus 126 ~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 205 (456)
+.++..+.+|....++.+..++++. .+.. ..+.. ..+...+++.+ ...+..+...+++.+.+...+
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~----------~~~~--~~~~~-~~~~~~~v~~~-l~~~G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEY----------FGFP--WSARA-IVLIFTVLFGS-FVWLSTSAVDRITRVLIFGKI 148 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHh----------cCCC--ccHHH-HHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHH
Confidence 9999999999999998887665421 1111 11121 22222223333 334556666666666654333
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcC-CCcchhHHHHHHHHHHH
Q 012823 206 VFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQIKSIVRTSITLCS 284 (456)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~-~p~~~~~~~~~s~~i~~ 284 (456)
...+..+.....+ .+..+..|...+...+.++..+++...++|.+|.+++++.+|++ ++||.+|+...+..+++
T Consensus 149 ~~l~~~ii~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~ 223 (381)
T TIGR00837 149 IAFALVFSGLLPH-----VKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIAL 223 (381)
T ss_pred HHHHHHHHHHHhh-----ccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 2222222111111 11111112111112455678899999999999999999999997 55589999999999999
Q ss_pred HHHHHHHhhhhhhcCCCcchhhhhCCCCCCC------CCc-ccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhcCCCC
Q 012823 285 TVYITTSFFGLLLFGDRTLDDVLANFDGDLG------IPY-SSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYA 357 (456)
Q Consensus 285 ~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~------~~~-~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~~~~~~~~~ 357 (456)
++|+.+........+.+.-.+...+.++.+. ... ..+...+..+...+.+..|+.......++...+.+.+++
T Consensus 224 ~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~ 303 (381)
T TIGR00837 224 VLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDD 303 (381)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999988777766654322222211111000 000 123556777788889999999999999999887765433
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHhhcCChH-HHHHhhchhhhhhHHHhhhhhHHhhhcCC
Q 012823 358 IPIAFDNRRFFAVTAALMGFIFVGANFVPSIW-DAFQFTGATAAVSVGFIFPAAIALRDTHG 418 (456)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~-~i~~l~Ga~~~~~~~filP~~~yl~~~~~ 418 (456)
+ + .++........+++.++|.+.|+.. ..++..| ++..++.+++|+++++|.||+
T Consensus 304 ~----~-~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 304 S----K-KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred c----c-CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 2 1 1133445566788889999998866 8999999 888899999999999996654
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.91 E-value=2e-21 Score=189.16 Aligned_cols=380 Identities=16% Similarity=0.179 Sum_probs=257.1
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHcchhHHHHHHH
Q 012823 45 GAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA--SKSATYSGVVADAFGGAGRALLQV 122 (456)
Q Consensus 45 ~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~--~~~~~y~~l~~~~~G~~~~~~~~~ 122 (456)
.....+.++.+|+|+|+||-.....|.+..+++++++..+++++++.+.|.... ++..++.+++++.+||+++.+..+
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~i 102 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF 102 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHH
Confidence 346899999999999999999999999999999999999999999999997653 456799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccc--cccchhhhhhHHH
Q 012823 123 CIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISF--RRVDSLRYTSALS 200 (456)
Q Consensus 123 ~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~--~~l~~l~~~s~~~ 200 (456)
..++..+..+.+|...+.+.+++.+.+... .... .|.. ..++.++++...... |-+.+....-+..
T Consensus 103 lYff~ly~ll~aY~~~itn~l~sfl~~ql~----------~~~~-~r~l-~slifv~~l~~iv~~G~~~v~kv~~~Lv~~ 170 (443)
T PRK13629 103 LYFFAICPLLWIYGVTITNTFMTFWENQLG----------FAPL-NRGF-VALFLLLLMAFVIWFGKDLMVKVMSYLVWP 170 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------cCCc-cHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999998888888765433211 1001 1222 222222233332222 2233333333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCC--C-----CcccccchhhhHHHHhhhhhhhhhhhhchhHHHhh----cC--
Q 012823 201 VGLAIVFVVITAGVAIVKTIDGSISMPCL--L-----PEISKQASFWKLFTTFPVLVTAYICHHNIHPIENE----LK-- 267 (456)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~----m~-- 267 (456)
.+..++.. ...++. +++.+.. . |+..+.........++|++++||+.|+++|++... .+
T Consensus 171 ~i~~l~~l-------~~~LiP-~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~ 242 (443)
T PRK13629 171 FIASLVLI-------SLSLIP-YWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKD 242 (443)
T ss_pred HHHHHHHH-------HHHHHH-HcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccc
Confidence 32111111 111111 1211110 1 11111111245778899999999999999998877 53
Q ss_pred ---C--CcchhHHHHHHHHHHHHHHHHHHhhhhhhcCCCc-------chhhhhCCCCCCCC-Ccc-----cHHHHHHHHH
Q 012823 268 ---D--PTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRT-------LDDVLANFDGDLGI-PYS-----SLLDDVVRVS 329 (456)
Q Consensus 268 ---~--p~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~-------~~~il~~~~~~~~~-~~~-----~~~~~~~~i~ 329 (456)
| ++|.+|++..+..+..++|+.+.+.+...-+++. +.+++..+.+..+. ... ..+.....+.
T Consensus 243 ~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~if 322 (443)
T PRK13629 243 FGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASII 322 (443)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHH
Confidence 3 3578899999999999999999998888766432 11222222211110 001 2356677777
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhcCC--CCCCCC--CCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHH
Q 012823 330 YGIHLMLVFPIVFFSLRLNLDGLLFP--YAIPIA--FDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGF 405 (456)
Q Consensus 330 ~~i~~~~s~p~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~f 405 (456)
..+.+..||--.....+|.+..++.+ .+.+.+ .....+.....++++.++..+..=|++..+++-.|+.....+.|
T Consensus 323 a~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~ 402 (443)
T PRK13629 323 ALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLC 402 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHH
Confidence 88899999999999999998887731 111111 11111335556888899999999999999999999999999999
Q ss_pred hhhhhHHhhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 012823 406 IFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSS 445 (456)
Q Consensus 406 ilP~~~yl~~~~~~~~~~~~~~~~~i~~~g~~~~v~~~~~ 445 (456)
++|.+..+|.. .-++.+++..++++++.|++......|+
T Consensus 403 l~P~y~i~kvp-~l~~yr~~~~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 403 LLPMYAIRKAP-SLAKYRGRLDNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred HHHHHHHHccH-HHHHhCCCchhHHHHHHHHHHHHHHHHh
Confidence 99999998832 2223344557899999998877666553
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.86 E-value=1.1e-19 Score=178.55 Aligned_cols=371 Identities=16% Similarity=0.190 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCHHHHHHHHcchhHHHHHH
Q 012823 44 SGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR--ASKSATYSGVVADAFGGAGRALLQ 121 (456)
Q Consensus 44 ~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~--~~~~~~y~~l~~~~~G~~~~~~~~ 121 (456)
....+.+.++++|+|+|.+|....+.||+..++..++...++.++.+++.|... +.+..++.|++++.|||+++.+..
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~ 85 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILIT 85 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHH
Confidence 445889999999999999999999999999999999999999999999999753 334789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhhHHHH
Q 012823 122 VCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSV 201 (456)
Q Consensus 122 ~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 201 (456)
+..++..+..+.+|....++.+.+.+.+.... +. ..+ ....+ ..++.+-.......+...+++.+-+
T Consensus 86 ~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~---------~~--p~~-~i~~l-ilv~il~~iv~~G~~~i~r~~~il~ 152 (397)
T TIGR00814 86 LLYFFAIYPILLIYSVAITNDSASFLVNQLGT---------AP--PLR-GLLSL-ALILILVAIMSFGEKLLFKIMGPLV 152 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CC--cHH-HHHHH-HHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 99999999999999999998887666431100 00 111 11111 2222222233334555555544443
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHH----hhcCC----Ccchh
Q 012823 202 GLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIE----NELKD----PTQIK 273 (456)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~----~~m~~----p~~~~ 273 (456)
...+...+... ++..-+-+.+.-...|... ..+.++..+++..++||.+|+++|+.. +|.+| ++|.+
T Consensus 153 ~~~ii~l~~l~---~~lip~~~~~~L~~~p~~~--~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~ 227 (397)
T TIGR00814 153 FPLVLILVLLS---LYLIPHWNGANLTTFPSFN--GFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCL 227 (397)
T ss_pred HHHHHHHHHHH---HHHHHHcCHHHHhcCCccc--chHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHH
Confidence 21221111111 1111111111111123211 235678899999999999999999997 44542 34788
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCCcc-----hh--hhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 012823 274 SIVRTSITLCSTVYITTSFFGLLLFGDRTL-----DD--VLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLR 346 (456)
Q Consensus 274 ~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~-----~~--il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~ 346 (456)
|++..+..+.+++|+.+-+.+....+.+.. +| .+..+.+..+ ...+..+..+...+....|+--.....+
T Consensus 228 k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~---~~~i~~~~~~f~~~Ai~tSFlG~~lg~~ 304 (397)
T TIGR00814 228 RIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFN---AAWISYAGPIVAIVAISKSFFGHYLGAR 304 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcC---CcHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999988888775431 11 1221111111 1456677788888899999999999999
Q ss_pred HHHHHhcCCC-CCCCC-CCCc-chhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhhcCCCCcch
Q 012823 347 LNLDGLLFPY-AIPIA-FDNR-RFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKN 423 (456)
Q Consensus 347 ~~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~~~~~~ 423 (456)
+.+..++.+. +.+.+ .+.+ .......++++.++..|..=|++..+++-.|+.....+.|++|.+..+|.. .-++.+
T Consensus 305 e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~-~l~~~~ 383 (397)
T TIGR00814 305 EGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVP-ALKKYR 383 (397)
T ss_pred HHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH-HHHHhC
Confidence 9988877211 11111 1111 133555678888999999999999999988888888999999999998831 111222
Q ss_pred hhHHHHHHHHHHH
Q 012823 424 DRLASWLMISLAV 436 (456)
Q Consensus 424 ~~~~~~~i~~~g~ 436 (456)
++..++.+++.|+
T Consensus 384 ~~~~~~fv~~~g~ 396 (397)
T TIGR00814 384 GRISNVFVTVIGL 396 (397)
T ss_pred CCcchheeEeeec
Confidence 3345665555543
No 16
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.71 E-value=1.3e-15 Score=148.78 Aligned_cols=372 Identities=14% Similarity=0.112 Sum_probs=240.1
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhhchHHHHHH-hhC-hHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCHHHHHHH
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGIMALPATVK-ELG-LIPGLIMIVLVGWLTESSIDMIMRFSR--ASKSATYSGVVAD 110 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~-~~G-~~~gii~li~~~~l~~~t~~~l~~~~~--~~~~~~y~~l~~~ 110 (456)
.+.+|+.+.+.+++.++++++|+|++..|.+.. ++| ...+++..+++++++...+....|... .++-.+|.-+ .+
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi-~~ 86 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI-SE 86 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH-HH
Confidence 367799999999999999999999999998765 455 666778888899999999999999876 2333344444 67
Q ss_pred HcchhHHHHHHHHHHHHHHHHH-HHHHHHhhcc-cccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccccc
Q 012823 111 AFGGAGRALLQVCIVVNNLGML-VVYMIIIGDV-LSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFR 188 (456)
Q Consensus 111 ~~G~~~~~~~~~~~~~~~~g~~-~~y~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 188 (456)
+||+.........-.+...... ..+.+..++. ++..+|. +.. +. ...+.... ..+..+-+.-..
T Consensus 87 afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c~~----------p~-~~~~lla~--~~l~~lt~~n~~ 152 (479)
T KOG1287|consen 87 AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-CDV----------PR-VASKLLAA--ALLVLLTLINSF 152 (479)
T ss_pred HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-CCC----------ch-HHHHHHHH--HHHHHHHHHhhh
Confidence 7888877766666555555554 7777888886 6665541 110 10 11121111 111222222223
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCC
Q 012823 189 RVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKD 268 (456)
Q Consensus 189 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~ 268 (456)
+++.-.+++.+..+.-+..+...++..++....+..+..+..+.-.+..+..++..++-.-.|+|.+..++-.+.+|+||
T Consensus 153 ~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEikn 232 (479)
T KOG1287|consen 153 SVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKN 232 (479)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcC
Confidence 34444445544444444444444444455444444332211111112234556778888999999999999999999999
Q ss_pred Cc-chhHHHHHHHHHHHHHHHHHHhhhhhhcCCC--cchh-hhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhH
Q 012823 269 PT-QIKSIVRTSITLCSTVYITTSFFGLLLFGDR--TLDD-VLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFS 344 (456)
Q Consensus 269 p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~--~~~~-il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~ 344 (456)
|+ .+|++...++.+++++|...-+..+..--.+ ..++ +-..+.+. ..+.+. ....+..+++.+.+.....+.
T Consensus 233 P~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~---~~G~~~-~~ip~~ValS~~G~~n~~ifs 308 (479)
T KOG1287|consen 233 PRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADR---ILGVFA-WAIPFSVALSLIGSLNSVIFS 308 (479)
T ss_pred ccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHH---hccchH-HHHHHHHHHHhhhhhhhHHHH
Confidence 99 6899999999999999999988877654321 1111 11111111 011233 677788899999999888888
Q ss_pred HHHHHHHhcCCCCCCCCCC---Ccc-hhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhhcCCCC
Q 012823 345 LRLNLDGLLFPYAIPIAFD---NRR-FFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIA 420 (456)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~~~ 420 (456)
..+.+.....+.+.|...+ .++ .-...+.+.....++..+..|+..++++.+-.-.....+.+-+++++|.+++..
T Consensus 309 ~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 309 SSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 8777776655444432111 111 111223444445555566779999999999999999999999999999887766
Q ss_pred cchhh
Q 012823 421 TKNDR 425 (456)
Q Consensus 421 ~~~~~ 425 (456)
+|+-|
T Consensus 389 ~rPiK 393 (479)
T KOG1287|consen 389 PRPIK 393 (479)
T ss_pred CCCEe
Confidence 66555
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.63 E-value=2.7e-12 Score=129.84 Aligned_cols=241 Identities=14% Similarity=0.109 Sum_probs=146.9
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcch
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGG 114 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~ 114 (456)
+++|+.+.++.+...+++++|+|++.+|..+.+.|- .+++..++.+++.......+.|...+ ++.......+++.+||
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 457889999999999999999999999988888886 46777888888878777777776643 3445556667899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 012823 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (456)
+..++......+........+.....+.+..+++. . ......++.....+...-....+..+...
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~--------------~-~~~~~~~~~~~~~l~~~~~ln~~g~~~~~ 146 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA--------------T-LSPVQICLATIGVLWLCTVANFGGARITG 146 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------c-cchHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 98888888766555444333333333333322220 0 00111111111111222222233444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc-chh
Q 012823 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIK 273 (456)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~-~~~ 273 (456)
.++.+.....+..+++.+...... .+.+...+...|. ....+.++..++....|+|.+........+|+|||+ +.|
T Consensus 147 ~i~~i~~~~~l~~l~~~~i~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP 223 (438)
T PRK10655 147 QISSVTVWGVIIPVVGLSIIGWFW-FSPSLYVAAWNPH--HLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVP 223 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCcccccCCcCcc--CCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcccccc
Confidence 444433322211111111111111 1211111111111 111235677778889999999999999999999998 799
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 012823 274 SIVRTSITLCSTVYITTSFFGL 295 (456)
Q Consensus 274 ~~~~~s~~i~~~~Y~~~g~~gy 295 (456)
|++..+..++.++|........
T Consensus 224 rAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 224 IAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765544
No 18
>PRK10249 phenylalanine transporter; Provisional
Probab=99.63 E-value=3.3e-12 Score=129.66 Aligned_cols=356 Identities=12% Similarity=0.068 Sum_probs=194.9
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHc
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAF 112 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP-~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~ 112 (456)
.+.+|+.+.++.....++.++|+|++..| .+.+++|- ..++..++.+++.......+.|...+ +......+.+++.+
T Consensus 17 ~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~ 95 (458)
T PRK10249 17 PTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYW 95 (458)
T ss_pred hhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 35678999999999999999999999998 55667786 47777888888888888888887764 55667788899999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccch
Q 012823 113 GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (456)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (456)
|++..+++.....+.............+..+....+ +. .. +......+.+.-....+..+.
T Consensus 96 g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~--------------~~---~~--~~~~~~~~~l~~~lN~~gv~~ 156 (458)
T PRK10249 96 GPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFP--------------DV---PT--WIWAAAFFIIINAVNLVNVRL 156 (458)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------cC---cH--HHHHHHHHHHHHHHHHhcchh
Confidence 999999998887766554444444444444422211 10 01 111111112222233344444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCC-C--C-CCCCCccc-ccchhhhHHHHhhhhhhhhhhhhchhHHHhhcC
Q 012823 193 LRYTSALSVGLAIVFVVITAGVAIVKTIDGSI-S--M-PCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (456)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-~~~~p~~~-~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 267 (456)
.+.+..+..+..+..++..+...+.....+.. + . .+.+++.. ...++.++..++....|+|.+........+|+|
T Consensus 157 ~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~ 236 (458)
T PRK10249 157 YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 44443333222221112211111211111110 0 0 01111000 013456788899999999999999999999999
Q ss_pred CCc-chhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcc----hhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhh
Q 012823 268 DPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTL----DDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVF 342 (456)
Q Consensus 268 ~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~ 342 (456)
||+ +.||++..+...+.++|...........++... ++...-+.+. + .+....+..+...+..+.+..-..
T Consensus 237 ~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~---~~~~~~~~~~~~~~a~~~~~~~~~ 312 (458)
T PRK10249 237 DPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNL-D---SNVVASALNFVILVASLSVYNSGV 312 (458)
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHc-C---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 998 589999999999999998755544433322110 1111111100 0 122333344444455555554444
Q ss_pred hHHHHHHHHhcCCCCCCC------CCCCcchh-hHHHHHHHHHHHHHhhcC--ChHHHHHhhchhhhhhHHHhhhhhHHh
Q 012823 343 FSLRLNLDGLLFPYAIPI------AFDNRRFF-AVTAALMGFIFVGANFVP--SIWDAFQFTGATAAVSVGFIFPAAIAL 413 (456)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~ia~~~~--~~~~i~~l~Ga~~~~~~~filP~~~yl 413 (456)
+...+.+...-.++..|. +.+...+. .....+.....++....+ .++.+++. +.....+.|++|.+.++
T Consensus 313 ~~~sR~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~--~~~~~~i~y~~~~~~~l 390 (458)
T PRK10249 313 YSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMAL--VVATLLLNWIMICLAHL 390 (458)
T ss_pred HHHHHHHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 555555544432222221 01111122 222222222222221222 24444444 23345688899999888
Q ss_pred hhc
Q 012823 414 RDT 416 (456)
Q Consensus 414 ~~~ 416 (456)
+.+
T Consensus 391 ~~r 393 (458)
T PRK10249 391 RFR 393 (458)
T ss_pred HHH
Confidence 854
No 19
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.62 E-value=4.1e-13 Score=132.22 Aligned_cols=340 Identities=15% Similarity=0.228 Sum_probs=209.0
Q ss_pred CCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHHH
Q 012823 39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRA 118 (456)
Q Consensus 39 ~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~ 118 (456)
++.|.+|.++.++++++|+|++.+|....+.+--.+++..++.+++.......+.+..++.+.++..+..++.+||+...
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGR 80 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHH
Confidence 46889999999999999999999998876643345777778888888888888999888777789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhhH
Q 012823 119 LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSA 198 (456)
Q Consensus 119 ~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 198 (456)
+..+....+....+.......++.+.... .+ ....+......++..-....+.++...+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------l~-----~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~ 142 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFIKTYL-------------LP-----RTPIIVIIILIIIVSIYIVRKGIEVLLRTAE 142 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cC-----CCCHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 98888777777666666666666553211 00 1111222222223333334456777777766
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhh-hhhhhhhhhhchhHHHhhcCCCcchhHHH
Q 012823 199 LSVGLAIVF-VVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFP-VLVTAYICHHNIHPIENELKDPTQIKSIV 276 (456)
Q Consensus 199 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~faf~~h~~~~~i~~~m~~p~~~~~~~ 276 (456)
+.....+.. ..+.. .. ..+..+..+..|-.+ .++.+...+.- ...++|.+........+++|||+|.+|+.
T Consensus 143 i~~~~~i~~~~~il~---~~--~~~~~~~~~l~P~~~--~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~ 215 (359)
T TIGR00912 143 ILLIIFLILFILVLI---LL--APKLGNIKNLLPVLE--NGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSI 215 (359)
T ss_pred HHHHHHHHHHHHHHH---HH--hcccccHHHccCccc--cCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHH
Confidence 655322222 11111 11 111122223344332 23445555544 77899998888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCCCCCC-----CCC-cccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 012823 277 RTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDL-----GIP-YSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLD 350 (456)
Q Consensus 277 ~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~-----~~~-~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~~ 350 (456)
..+..++.++|....+.....+|.+..++. .+|-.+ +.+ +-..+..+.-..+....+...-...+.....+.
T Consensus 216 ~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~--~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 216 IKAIIIGVLLYILTTFVSISVFGGNVTKNL--YWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHheecHHHhhhh--cccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888885432211 111000 000 011222333445666777777888888888888
Q ss_pred HhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCChHHHH---HhhchhhhhhHHHhhhhhHHhhh
Q 012823 351 GLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAF---QFTGATAAVSVGFIFPAAIALRD 415 (456)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~---~l~Ga~~~~~~~filP~~~yl~~ 415 (456)
+.+..++. |...... ....+.++...++..... +..+ ..+....+++|.++.+..
T Consensus 294 ~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~ 351 (359)
T TIGR00912 294 KLFKKRKY-------SILILPV--LMVIFSISFFPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIV 351 (359)
T ss_pred HHhCCCCc-------chhHHHH--HHHHHHHHHccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 77643221 2222211 112333333333333321 2222 233456678999877763
No 20
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.61 E-value=3.2e-12 Score=130.40 Aligned_cols=246 Identities=11% Similarity=0.067 Sum_probs=150.7
Q ss_pred CCCCccHHHHHHHHHHHHHhhhhchHHHHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHcc
Q 012823 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKE-LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS--ATYSGVVADAFG 113 (456)
Q Consensus 37 ~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~-~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~--~~y~~l~~~~~G 113 (456)
.+|+.|.++++...+++++|+|++.+|....+ +|-...++..++.+++.......+.|...+.++ ....+..++.+|
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 36789999999999999999999999988765 443334566677777777777777887654333 445556799999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
|+..++......+........+.....+.+..+++.. +.. ......+..+..++..-....+..+..
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~-----------~~~--~~~~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF-----------GSG--NPVPSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------cCC--CcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 9999988888766554445555555444443333210 000 011111211222222223344556666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc--cccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCcc
Q 012823 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEI--SKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQ 271 (456)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~ 271 (456)
..++.+.....+..+++.+...+.. .+++....+..+.. .....+..+..++....|+|.+........+|+||+++
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~ 230 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSD 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccc
Confidence 5555554432222222222111211 12211000111110 01124556778888999999999999999999999558
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Q 012823 272 IKSIVRTSITLCSTVYITTSFFGLL 296 (456)
Q Consensus 272 ~~~~~~~s~~i~~~~Y~~~g~~gy~ 296 (456)
.+|++..+..++.++|+........
T Consensus 231 iPrai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 231 VGKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988766443
No 21
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.60 E-value=7.5e-12 Score=127.54 Aligned_cols=360 Identities=11% Similarity=0.061 Sum_probs=195.8
Q ss_pred CCccHHHHHHHHHHHHHhhhhchHHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C-CHHHHHHHHcchh
Q 012823 39 DGASFSGAVFNLSTTIVGAGIMALPATVK-ELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-A-TYSGVVADAFGGA 115 (456)
Q Consensus 39 ~~~s~~~~~~~li~~~iG~GiL~lP~~f~-~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~-~-~y~~l~~~~~G~~ 115 (456)
|+.+.++.+...+++++|+|++.+|.... .+|....++..++.++........+.|...+.++ . ...+-+++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 57889999999999999999999997644 5675445566777777777778888887765443 2 4556689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 012823 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (456)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 195 (456)
..++......+........+.....+.+....|.. +.. .....+......+..+-....+..+....
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~-----------~~~--~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~ 147 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIF-----------GGG--NNPPSIIGASVLLWCVHFLVLRGVEGAAF 147 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------cCC--CcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 99998888776654445555554444443222210 000 01111111111112222222345555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----cccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCcc
Q 012823 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLP----EISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQ 271 (456)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~ 271 (456)
++.+..+..+..+++.+...+.. .+++.-.++.++ .......+.++..++....|+|.+........+|.||+++
T Consensus 148 i~~i~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ 226 (468)
T TIGR03810 148 INTITTIAKLVPLFVFIVIGIFA-FKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSD 226 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCccc
Confidence 54444322222221111111111 111110000000 0011123445667888999999999999999999999889
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcc----hh-hhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 012823 272 IKSIVRTSITLCSTVYITTSFFGLLLFGDRTL----DD-VLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLR 346 (456)
Q Consensus 272 ~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~----~~-il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~ 346 (456)
.+|+...+...+.++|....+..+...+.+.. ++ ...-+.+- .+++...+..+...++.+.+.........
T Consensus 227 ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~----~g~~~~~~i~~~~~is~~~~~~~~~~~~s 302 (468)
T TIGR03810 227 VGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHM----VGTWGAVLINIGLIISILGAWLSWTLLPA 302 (468)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHH----cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988776654432111 11 10000000 01234455556666666666666666565
Q ss_pred HHHHHhcCCCCCCC------CCCCcchh-hHHHHHHHHHHHHHh-hcCChHHHHHhhchhhhhhHHHhhhhhHHhhhcCC
Q 012823 347 LNLDGLLFPYAIPI------AFDNRRFF-AVTAALMGFIFVGAN-FVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHG 418 (456)
Q Consensus 347 ~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~ia~-~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~ 418 (456)
+.....-.++.-|+ +.+...+. .....+.....++.. ..+.++.+.++. .....+.|+++.+.++|.+++
T Consensus 303 R~~~a~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~--~~~~li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 303 EIPLLMAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLA--TSAILVPYLWSAAYQVKLSWR 380 (468)
T ss_pred HHHHHHHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 55544432222111 01222222 222111111111111 113455555553 334567788898888886543
No 22
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.59 E-value=2.7e-12 Score=132.02 Aligned_cols=250 Identities=15% Similarity=0.154 Sum_probs=145.1
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhhchHHHH-HHhhChH-HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHH
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGIMALPAT-VKELGLI-PGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADA 111 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-f~~~G~~-~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~ 111 (456)
++.+|+.+.++.+...++.++|+|++..|.. ..++|-. ..++..++.+++.......+.|.... ++......-.++.
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~ 117 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEV 117 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhH
Confidence 4677899999999999999999999999865 5566743 22345566667677777777777654 3333455556889
Q ss_pred cchhHHHHHHHHHHHH-HHHHHHHHHHHhhcccc-cccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccc
Q 012823 112 FGGAGRALLQVCIVVN-NLGMLVVYMIIIGDVLS-GAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRR 189 (456)
Q Consensus 112 ~G~~~~~~~~~~~~~~-~~g~~~~y~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 189 (456)
+||+..++......+. ..+.+..+....++.+. .+.++ + ....+.. .+.....+++.-....+.
T Consensus 118 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~----------~-~~~~~~~---~~i~~~~i~~~~~ln~~G 183 (501)
T TIGR00911 118 FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD----------C-EVPEWAI---RLVAVLCVLLLTLVNCLS 183 (501)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------C-CCchHHH---HHHHHHHHHHHHHHHHhh
Confidence 9999888776654432 22333344444444431 11111 0 0000001 111111112222233344
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccc-cchhhhHHHHhhhhhhhhhhhhchhHHHhhcCC
Q 012823 190 VDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIENELKD 268 (456)
Q Consensus 190 l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~ 268 (456)
.+....++.+.....+..+++.+...++....++....+....+.. ..++.++..++....|+|.+........+|+||
T Consensus 184 vk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~kn 263 (501)
T TIGR00911 184 VKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKN 263 (501)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcC
Confidence 5555555544443333222222222233222222111100000111 124567778899999999999999999999999
Q ss_pred Cc-chhHHHHHHHHHHHHHHHHHHhhhhhhc
Q 012823 269 PT-QIKSIVRTSITLCSTVYITTSFFGLLLF 298 (456)
Q Consensus 269 p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~f 298 (456)
|+ +.||++..+..++.++|+...+......
T Consensus 264 P~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 264 PYRTLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 97 6899999999999999999876654433
No 23
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.59 E-value=1.9e-11 Score=123.90 Aligned_cols=245 Identities=13% Similarity=0.098 Sum_probs=143.2
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcc
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFG 113 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G 113 (456)
++.+|+.+.++.+...++.++|+|++.+|....+.|. ..+...++.++........+.|.... ++......-+++.+|
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g 82 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFG 82 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcC
Confidence 4677899999999999999999999999988877764 34555566666666666667776553 333344444789999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
|+..++......+..............+......+. ..+.+ . .......++..+-.......+..
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~--~~~~~~~~~~~~~~ln~~gvk~~ 147 (445)
T PRK10644 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----------LKDPL--V--LTITCVVVLWIFVLLNIVGPKMI 147 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cCCcH--H--HHHHHHHHHHHHHHHHHhchHHH
Confidence 999888877766554333333332333332211110 00010 0 11111111112222223344555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc-ch
Q 012823 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QI 272 (456)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~-~~ 272 (456)
..++.+.....+..++......+.. .+++...+ .++ ..+..++..+..++....|+|.+........+|+|||+ +.
T Consensus 148 ~~i~~i~~~~~~i~l~~~~~~~~~~-~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~i 224 (445)
T PRK10644 148 TRVQAVATVLALIPIVGIAVFGWFW-FRGETYMA-AWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNV 224 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCchhccC-Ccc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccch
Confidence 5554444322222111111111111 12110011 111 11122345667788889999999999999999999998 69
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhc
Q 012823 273 KSIVRTSITLCSTVYITTSFFGLLLF 298 (456)
Q Consensus 273 ~~~~~~s~~i~~~~Y~~~g~~gy~~f 298 (456)
||++..+..++.++|....+......
T Consensus 225 Prai~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 225 PIATIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999887754433
No 24
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.57 E-value=8.8e-12 Score=125.82 Aligned_cols=243 Identities=13% Similarity=0.055 Sum_probs=146.8
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcch
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGG 114 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~ 114 (456)
+++|+.+.++.+...+++++|+|++.+|....+.|-. .+...++.++........+.|...+ ++.....+.+++ +|+
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 6789999999999999999999999999999888853 5666667777777777777776653 333454555677 799
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 012823 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (456)
+..+.+..............+.....+.+...++.. +++ . .. .+..+..+...-+...+..+...
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----------~~~-~-~~--~~~~~~i~~~~~~ln~~gvk~~~ 144 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----------NDP-I-PA--GIACIAIVWVFTFVNMLGGTWVS 144 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----------CCh-H-HH--HHHHHHHHHHHHHHHHHhHHHHH
Confidence 888888776554433333344344444443333210 000 0 01 11111111122223334444454
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc-chh
Q 012823 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIK 273 (456)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~-~~~ 273 (456)
.++.+..++.+..++........+ .+.+...++..+ ....++.++..++....|+|.+...+....+|+|||+ +.|
T Consensus 145 ~i~~i~~~~~li~~~~~~i~g~~~-~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iP 221 (435)
T PRK10435 145 RLTTIGLVLVLIPVVGTAIVGWHW-FDAATYAANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVP 221 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCHHhhcccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcccccc
Confidence 444444322221111111111111 111000011111 1123466788999999999999999999999999997 799
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Q 012823 274 SIVRTSITLCSTVYITTSFFGLLLF 298 (456)
Q Consensus 274 ~~~~~s~~i~~~~Y~~~g~~gy~~f 298 (456)
|++..+..++.++|...........
T Consensus 222 rAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 222 LATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999877655433
No 25
>PRK15049 L-asparagine permease; Provisional
Probab=99.57 E-value=2.6e-11 Score=124.19 Aligned_cols=358 Identities=10% Similarity=0.075 Sum_probs=191.1
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHH-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHcc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPA-TVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR-ASKSATYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~-~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~-~~~~~~y~~l~~~~~G 113 (456)
+.+|+.+.++.....++.++|+|++..|. ++.++|- .+++..++.+++.......+.|... .+.......-+++.+|
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G 103 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLG 103 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhC
Confidence 45688999999999999999999999985 6778886 4677777888888888888888765 4456677788899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
++..+++.....+........-....+..+.. .+. ++. ... +......+++.-.......+..
T Consensus 104 ~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~-~~~-----------~~~---~~~--~~~~~~~~~l~~~iN~~gvk~~ 166 (499)
T PRK15049 104 EKAAYVAGWMYFINWAMTGIVDITAVALYMHY-WGA-----------FGG---VPQ--WVFALAALTIVGTMNMIGVKWF 166 (499)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-----------CCC---CcH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888877665433222222222222210 000 000 011 1111111122222233344444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-----CCcccc--cchhhhHHHHhhhhhhhhhhhhchhHHHhhc
Q 012823 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCL-----LPEISK--QASFWKLFTTFPVLVTAYICHHNIHPIENEL 266 (456)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~~~~--~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m 266 (456)
..+..+...+.+..++..+...+.....+...+... ..+..+ ..++.+++.++....|+|.+...+....+|+
T Consensus 167 ~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~ 246 (499)
T PRK15049 167 AEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 444333221111111111111111111111110000 000000 1234455666778899999999999999999
Q ss_pred CCCc-chhHHHHHHHHHHHHHHHHHHhhhhhhcCCCc----chhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhh
Q 012823 267 KDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGDRT----LDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIV 341 (456)
Q Consensus 267 ~~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~----~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~ 341 (456)
|||+ +.||++..+...+.++|+............+. .++...-+..- +. .....+..+...+..+.+..-.
T Consensus 247 knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~-g~---~~~~~ii~~~ilia~~ss~ns~ 322 (499)
T PRK15049 247 KDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKL-GV---PYIGSIMNIVVLTAALSSLNSG 322 (499)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHc-Cc---hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999 58999999999998888887665544333211 11111111100 10 2233344455555556566555
Q ss_pred hhHHHHHHHHhcCCCCCCC------CCCCcchh-hHHHHHHHHHHHHHhhcC--ChHHHHHhhchhhhhhHHHhhhhhHH
Q 012823 342 FFSLRLNLDGLLFPYAIPI------AFDNRRFF-AVTAALMGFIFVGANFVP--SIWDAFQFTGATAAVSVGFIFPAAIA 412 (456)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~ia~~~~--~~~~i~~l~Ga~~~~~~~filP~~~y 412 (456)
.+...+.+...-.++..|. +.+...+. +...++.+...++....| .++.++++ +..+..+.|++|.+.+
T Consensus 323 ~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~--~~~~~li~y~~~~~~~ 400 (499)
T PRK15049 323 LYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNF--ASLGIIASWAFIIVCQ 400 (499)
T ss_pred HHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 5566555555543222221 01111121 222222222222222223 25556666 4456677888898888
Q ss_pred hhhcC
Q 012823 413 LRDTH 417 (456)
Q Consensus 413 l~~~~ 417 (456)
++.||
T Consensus 401 l~~R~ 405 (499)
T PRK15049 401 MRLRK 405 (499)
T ss_pred HHHHH
Confidence 87554
No 26
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.57 E-value=2.2e-11 Score=124.12 Aligned_cols=242 Identities=12% Similarity=0.091 Sum_probs=146.4
Q ss_pred cccCCCCccHHHHHHHHHHHHHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHH
Q 012823 34 HEAGIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADA 111 (456)
Q Consensus 34 ~~~~~~~~s~~~~~~~li~~~iG~GiL~lP-~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~ 111 (456)
+.+.+|+.+.++.....++.++|+|++..| .+++++|. ..+...++.+++.......+.|.... ....++.+.+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 346789999999999999999999999987 57888887 45666777777777777667776543 3444677889999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 012823 112 FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (456)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 191 (456)
+||...+++.....+.............+..+....+ +. ....+..+ .+..+-+......+
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p--------------~~---~~~~~~~~--~~~~~~~iN~~g~~ 154 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFP--------------DL---SDWVASLA--VVLLLLSLNLATVK 154 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CC---cHHHHHHH--HHHHHHHHHHHhHH
Confidence 9999999999888866543334444444444422221 10 11111111 11222222233444
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhcC--CCC-----CCCCCCcccc-cchhhhHHHHhhhhhhhhhhhhchhHHH
Q 012823 192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDG--SIS-----MPCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIE 263 (456)
Q Consensus 192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~p~~~~-~~~~~~~~~~~~~~~faf~~h~~~~~i~ 263 (456)
....++.+.....+..++..++..+.....+ +.. ..+.+++... ..++.++..++....|+|.+...+....
T Consensus 155 ~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a 234 (469)
T PRK11049 155 MFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTA 234 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 4444444333222222222221112111111 000 0000110000 1234568889999999999999999999
Q ss_pred hhcCCCc-chhHHHHHHHHHHHHHHHHHHhhhh
Q 012823 264 NELKDPT-QIKSIVRTSITLCSTVYITTSFFGL 295 (456)
Q Consensus 264 ~~m~~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy 295 (456)
+|+|||+ +.||++..+...+.+.|........
T Consensus 235 ~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 235 AETKDPEKSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 9999999 5899998777777888876665544
No 27
>TIGR00909 2A0306 amino acid transporter.
Probab=99.56 E-value=3.6e-12 Score=128.62 Aligned_cols=301 Identities=11% Similarity=0.045 Sum_probs=177.4
Q ss_pred CCCccHHHHHHHHHHHHHhhhhchHHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcchh
Q 012823 38 IDGASFSGAVFNLSTTIVGAGIMALPAT-VKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGGA 115 (456)
Q Consensus 38 ~~~~s~~~~~~~li~~~iG~GiL~lP~~-f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~~ 115 (456)
+|+.+.++.+...+++++|+|++.+|.. ...+|. ..++..++.+++.......+.|..++ ++.....+..++.+||+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~ 80 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGEL 80 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcH
Confidence 5789999999999999999999999955 445565 35566667777777777777777654 33345556678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 012823 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (456)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 195 (456)
..++......+.....+..+....++.+..+++....+. +.+.....+......+..+..+++.-....+..+...+
T Consensus 81 ~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 81 TAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDL---PAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC---chhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 999988888777766777777777777655543110000 00000000000011111112222333333445666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc-chhH
Q 012823 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKS 274 (456)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~-~~~~ 274 (456)
++.+...+.+...++.+.....+...+ +..|.. ..++.++..++....++|.+........+|+|||+ +.+|
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ 230 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASN-----NYTPFM--PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPK 230 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHH-----hcCCCC--CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccH
Confidence 665555333332222222222211111 111111 12345678889999999999999999999999997 6899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCC--c--chhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 012823 275 IVRTSITLCSTVYITTSFFGLLLFGDR--T--LDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLD 350 (456)
Q Consensus 275 ~~~~s~~i~~~~Y~~~g~~gy~~fG~~--~--~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~~ 350 (456)
++..+..++.++|...........+.+ . ++....-..+. .+++...+..+...+..+.+.........+.+.
T Consensus 231 ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~ 306 (429)
T TIGR00909 231 AIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDL----GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLF 306 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHh----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876655332211 0 00000000000 013344455566666776766666666666555
Q ss_pred Hhc
Q 012823 351 GLL 353 (456)
Q Consensus 351 ~~~ 353 (456)
...
T Consensus 307 ~~a 309 (429)
T TIGR00909 307 AMS 309 (429)
T ss_pred HHH
Confidence 554
No 28
>PRK11021 putative transporter; Provisional
Probab=99.55 E-value=4.1e-11 Score=120.17 Aligned_cols=226 Identities=18% Similarity=0.177 Sum_probs=139.8
Q ss_pred cHHHHHHHHHHHHHhhhhchHHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHcchhHHHH
Q 012823 42 SFSGAVFNLSTTIVGAGIMALPAT-VKELGLIPGLIMIVLVGWLTESSIDMIMRFSR-ASKSATYSGVVADAFGGAGRAL 119 (456)
Q Consensus 42 s~~~~~~~li~~~iG~GiL~lP~~-f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~-~~~~~~y~~l~~~~~G~~~~~~ 119 (456)
+.++++...+++++|+|++.+|-. .+++|- ..++..++.+++.......+.|... .++......-+++.+||+..+.
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 678999999999999999999854 556774 4677777888888878888888765 3445566677899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhhHH
Q 012823 120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSAL 199 (456)
Q Consensus 120 ~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 199 (456)
.....................+.+...++ ...+ .. +......++++-+...+..+...+++.+
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~--~~~~~~~~~~~~~ln~~Gv~~~~~~~~~ 143 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFG--------------WSSW-QL--LLAELLTLALLWLLNLRGASSSANLQTV 143 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcC--------------CCCc-hH--HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88777653332223333333333322221 0000 11 1111111122223333445555554443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc-chhHHHH
Q 012823 200 SVGLAIVFVVITAGVAIVKTIDGSISMPC-LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVR 277 (456)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~-~~~~~~~ 277 (456)
..+. .+.+.. .... .++.+..+ ..++. ...++.++..++....|+|.+........+|+|||+ +.||++.
T Consensus 144 ~~~~---~~~i~~-~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~ 215 (410)
T PRK11021 144 IALL---IVALVV-AIWW---AGDIKPADIPFPAP-GSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALM 215 (410)
T ss_pred HHHH---HHHHHH-HHHH---HcCCchhcCCCCCC-CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHH
Confidence 3211 111111 1111 11111111 11111 123566788899999999999999999999999998 6999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 012823 278 TSITLCSTVYITTSFF 293 (456)
Q Consensus 278 ~s~~i~~~~Y~~~g~~ 293 (456)
.+..++.++|+.....
T Consensus 216 ~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 216 IGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999997765
No 29
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.55 E-value=5.4e-11 Score=121.38 Aligned_cols=244 Identities=11% Similarity=0.026 Sum_probs=144.8
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPAT-VKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G 113 (456)
+.+|+.+.++.....++.++|+|++..|.. .+.+|-...++..++.+++.......+.|...+ ++...+...+++.+|
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g 90 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLG 90 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC
Confidence 457889999999999999999999988844 667785445667777778777778888887653 445667778899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
++..+++.....+.....+.......+..+....++ . ....+..+. .+++-+...+..+..
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~--------------~---~~~~~~~~~--~~~~~~in~~gvk~~ 151 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ--------------V---PVWPWCLLF--CALIFGLNVVSTRFF 151 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------------C---cHHHHHHHH--HHHHHHHHHHhHHHH
Confidence 999888888777665444433333333332211110 0 011111111 111222223334444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCCCCccc--c--cchhhhHHHHhhhhhhhhhhhhchhHHHhh
Q 012823 194 RYTSALSVGLAIVFVVITAGVAIVKTIDG----SISMPCLLPEIS--K--QASFWKLFTTFPVLVTAYICHHNIHPIENE 265 (456)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~--~--~~~~~~~~~~~~~~~faf~~h~~~~~i~~~ 265 (456)
...+.....+.++.++..+...+...... +.+.....++.+ + ..+..++..++....|+|.+-..+....+|
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 231 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 43332222111111111111111111100 000000000000 0 122345777888889999999999999999
Q ss_pred cCCCc-chhHHHHHHHHHHHHHHHHHHhhhhhhc
Q 012823 266 LKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLF 298 (456)
Q Consensus 266 m~~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~f 298 (456)
+|||+ +.+|++..+..++.++|+...+......
T Consensus 232 ~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~ 265 (471)
T PRK11387 232 TENPAKVIPVAIRTTIARLVIFFVGTVLVLAALI 265 (471)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 99999 5899999999999999998876544433
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.54 E-value=3.3e-11 Score=122.32 Aligned_cols=355 Identities=11% Similarity=0.078 Sum_probs=193.1
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHH-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHcc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPA-TVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR-ASKSATYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~-~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~-~~~~~~y~~l~~~~~G 113 (456)
+.+|+.+.++.....++.++|+|++..|. +.+++|- ..++..++.+++.......+.|... .+....+.+-+++.+|
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g 87 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWG 87 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 57799999999999999999999999984 5667785 4666777777777777777777654 4556677778899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
|...++......+.....+.......++.++...++ . ....+.. ....+.-.......+..
T Consensus 88 ~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~--------------~---~~~~~~~--i~~~~~~~lN~~gv~~~ 148 (456)
T PRK10238 88 SFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE--------------I---PTWVSAA--VFFVVINAINLTNVKVF 148 (456)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------------C---cHHHHHH--HHHHHHHHHHHHhHHHH
Confidence 999999999988887777777776666666332211 0 1111111 11122222222333444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcC--CCC--CCCCCCc--ccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcC
Q 012823 194 RYTSALSVGLAIVFVVITAGVAIVKTIDG--SIS--MPCLLPE--ISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (456)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~p~--~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 267 (456)
..++.+...+.+..+++.+...+.....+ ... ..+.++. +. ...+.++..+++...|+|.+-.......+|+|
T Consensus 149 ~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~k 227 (456)
T PRK10238 149 GEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLELVGITAAEAD 227 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 44444333222222211111111111111 110 0111110 10 12345677788889999999999999999999
Q ss_pred CCc-chhHHHHHHHHHHHHHHHHHHhhhh--hhcCCCc--chhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhh
Q 012823 268 DPT-QIKSIVRTSITLCSTVYITTSFFGL--LLFGDRT--LDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVF 342 (456)
Q Consensus 268 ~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy--~~fG~~~--~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~ 342 (456)
||+ +.||++..+.....+.|........ ..+.+-. .++...-+.+- + ......+......+..+.+..-..
T Consensus 228 nP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~-g---~~~~~~i~~~~i~~~~~s~~~~~~ 303 (456)
T PRK10238 228 NPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHEL-G---DTFVANALNIVVLTAALSVYNSCV 303 (456)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHc-C---ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 5899998888877777766433321 1111110 11111111100 0 012233344444445455555555
Q ss_pred hHHHHHHHHhcCCCCCCC------CCCCcchh-hHHHHHHHHHHHHHhhcC--ChHHHHHhhchhhhhhHHHhhhhhHHh
Q 012823 343 FSLRLNLDGLLFPYAIPI------AFDNRRFF-AVTAALMGFIFVGANFVP--SIWDAFQFTGATAAVSVGFIFPAAIAL 413 (456)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~ia~~~~--~~~~i~~l~Ga~~~~~~~filP~~~yl 413 (456)
+...+.+...-.++..|. +.+...+. ....++.....++....| .++.++++ +..+..+.|++|.+.++
T Consensus 304 ~~~sR~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~--~~~~~~i~y~~~~~~~l 381 (456)
T PRK10238 304 YCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMAL--VVSALVINWAMISLAHM 381 (456)
T ss_pred HHHHHHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 555555544432222211 01111122 222222222212111222 25555665 33455688999999999
Q ss_pred hhcC
Q 012823 414 RDTH 417 (456)
Q Consensus 414 ~~~~ 417 (456)
+.+|
T Consensus 382 ~~r~ 385 (456)
T PRK10238 382 KFRR 385 (456)
T ss_pred HHHH
Confidence 8554
No 31
>PRK10746 putative transport protein YifK; Provisional
Probab=99.54 E-value=9.3e-11 Score=119.04 Aligned_cols=360 Identities=12% Similarity=0.054 Sum_probs=197.7
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHc
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR-ASKSATYSGVVADAF 112 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP-~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~-~~~~~~y~~l~~~~~ 112 (456)
++.+|+.+.++.....++.++|+|++..| .+.+.+|- ..++..++.+++.......+.|... .+....+.+.+++.+
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~ 84 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYM 84 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 36678999999999999999999999988 56778886 4666777777777777888888765 455678888899999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccch
Q 012823 113 GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (456)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (456)
|++..+++.....+.............++.+....++ . ....+..+ .++.+-.......+.
T Consensus 85 g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~--------------~---~~~~~~~~--~~~~~~~lN~~gv~~ 145 (461)
T PRK10746 85 SPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE--------------M---AQWIPALI--AVALVALANLAAVRL 145 (461)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------------C---chHHHHHH--HHHHHHHHHHHhHHH
Confidence 9999999888887765555555555555554322211 0 01111111 111111122233333
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH--HHhhcCCCCC----CCCCCcc-cccchhhhHHHHhhhhhhhhhhhhchhHHHhh
Q 012823 193 LRYTSALSVGLAIVFVVITAGVAI--VKTIDGSISM----PCLLPEI-SKQASFWKLFTTFPVLVTAYICHHNIHPIENE 265 (456)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~p~~-~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~ 265 (456)
...+......+.+..+++.+...+ .-...++... .+..++. ....++.++..++....|+|.+...+....+|
T Consensus 146 ~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E 225 (461)
T PRK10746 146 YGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGE 225 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 333322222111111111111111 1111111000 0100100 00124667889999999999999999999999
Q ss_pred cCCCc-chhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcc----hhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhh
Q 012823 266 LKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTL----DDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPI 340 (456)
Q Consensus 266 m~~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~ 340 (456)
+|||+ +.||++..+...+.++|....+........+.. ++....+.+- +. .....+......+..+.+...
T Consensus 226 ~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~-g~---~~~~~i~~~~il~a~~s~~n~ 301 (461)
T PRK10746 226 AKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKI-GI---TAAAGIINFVVLTAALSGCNS 301 (461)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHh-Cc---hhHHHHHHHHHHHHHHHHHHH
Confidence 99998 689999988888888888865554433322111 1111111000 00 122234444555555666555
Q ss_pred hhhHHHHHHHHhcCCCCCCCC------CCCcchh-hHHHHHHHHHHHHHhhcCChHHHHHhhchhh--hhhHHHhhhhhH
Q 012823 341 VFFSLRLNLDGLLFPYAIPIA------FDNRRFF-AVTAALMGFIFVGANFVPSIWDAFQFTGATA--AVSVGFIFPAAI 411 (456)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~--~~~~~filP~~~ 411 (456)
..+...+.+...-.++..|.. .+..++. .......+.+.......|+-..+++++-..+ ...+.++.+.+.
T Consensus 302 ~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~ 381 (461)
T PRK10746 302 GMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILIS 381 (461)
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655433332211 1111111 2222122222233334555555555433332 246778888888
Q ss_pred HhhhcCC
Q 012823 412 ALRDTHG 418 (456)
Q Consensus 412 yl~~~~~ 418 (456)
++|.||+
T Consensus 382 ~i~~r~~ 388 (461)
T PRK10746 382 QLRFRRA 388 (461)
T ss_pred HHHHHHh
Confidence 8875543
No 32
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.53 E-value=4e-11 Score=121.79 Aligned_cols=241 Identities=14% Similarity=0.101 Sum_probs=154.6
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP-~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G 113 (456)
+.+|+.+.++.....+++++|+|++.+| .+.+++|- .+++..++.+++.......+.|...+ ++.....+.+++.+|
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g 87 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIG 87 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhC
Confidence 6789999999999999999999999999 66778886 47778888888888888888887754 455678888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
|+..++......+.....+.......++.++...++ . .. +......+.+.-.......+..
T Consensus 88 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~---~~--~~~~~~~~~~~~~~n~~gv~~~ 148 (452)
T TIGR01773 88 RWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD--------------I---PL--WLFSLILTIVLTLTNLYSVKSY 148 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------------C---cH--HHHHHHHHHHHHHHHHHhcchh
Confidence 999999988887776666666666666655433221 0 11 1111111122222233344444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCC----CCCCccc-ccchhhhHHHHhhhhhhhhhhhhchhHHHhhcC
Q 012823 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGS-ISMP----CLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (456)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~p~~~-~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 267 (456)
..++....+..+..++..+...+....... ..+. +..++.. ...++.++..++....|+|.+........+|+|
T Consensus 149 ~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k 228 (452)
T TIGR01773 149 GEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESS 228 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhc
Confidence 444433332222111111111111111111 0010 1011000 012345688899999999999999999999999
Q ss_pred CCc-chhHHHHHHHHHHHHHHHHHHhhhhh
Q 012823 268 DPT-QIKSIVRTSITLCSTVYITTSFFGLL 296 (456)
Q Consensus 268 ~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~ 296 (456)
||+ +.||++..+...+.++|+........
T Consensus 229 ~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~ 258 (452)
T TIGR01773 229 NPIKSITRATNSVIWRIIVFYLGSIFIVVA 258 (452)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 998 68999988888888888886554443
No 33
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.51 E-value=3.7e-11 Score=124.30 Aligned_cols=371 Identities=12% Similarity=0.008 Sum_probs=199.0
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHH--HhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATV--KELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAF 112 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f--~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~ 112 (456)
+.+|+.+.++.+...++.++|+|++.+|-.. ..+|-. .++..++.++.+...+....|...+ ++..+...-.++.+
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~ 103 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTV 103 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHh
Confidence 5678999999999999999999999998543 347754 5566677777777777777776653 22223333357789
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccch
Q 012823 113 GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (456)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (456)
|+...+++.....+.....+.......++.+..++.......................... .+..++++-....+..+.
T Consensus 104 G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~-a~~ii~l~~~ln~~Gik~ 182 (557)
T TIGR00906 104 GELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFF-AVCLILLLAVLLSFGVKE 182 (557)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHH-HHHHHHHHHHHHHhchhH
Confidence 9999999888877766555554444445444433321000000000000000000001111 111222222344456666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--CCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc
Q 012823 193 LRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPC--LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT 270 (456)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~ 270 (456)
.++++.+.....+..+++.+...+.+...+++.... ..+++. ..++.+++.+.....|+|.+...+....+|.|||+
T Consensus 183 s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~-p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~ 261 (557)
T TIGR00906 183 SAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFM-PYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ 261 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCC-CcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc
Confidence 666665555333333222222222221111111000 000111 12356788889999999999999999999999999
Q ss_pred -chhHHHHHHHHHHHHHHHHHHhhhhhhcCCC---cchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 012823 271 -QIKSIVRTSITLCSTVYITTSFFGLLLFGDR---TLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLR 346 (456)
Q Consensus 271 -~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~---~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~ 346 (456)
+.||++..+..+++++|..+.+.-......+ ..+.+...+... + .++...+..+......+.+.....+...
T Consensus 262 r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~-g---~~~~~~ii~~~~~~~~~~sl~~~~~~~s 337 (557)
T TIGR00906 262 RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYV-G---WGPAKYIVAVGALCGMSTSLLGGMFPLP 337 (557)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHc-C---chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999876644332211 111111111111 0 0233344445555555555555555655
Q ss_pred HHHHHhcCCCCCCC-----CCCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhhc
Q 012823 347 LNLDGLLFPYAIPI-----AFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDT 416 (456)
Q Consensus 347 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~ 416 (456)
+.+...-.++.-|. +.++..-....++..+.+.+++.. .++..+.++. ..+..+.|.++++..+..|
T Consensus 338 Ril~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~-~~~~~l~~l~--sig~ll~y~lv~~~~l~lR 409 (557)
T TIGR00906 338 RVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFL-FDLKALVDLL--SIGTLLAYSLVAACVLILR 409 (557)
T ss_pred HHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHH-cCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 55555533222221 001111111222333333444443 3566666663 3444677888877666654
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.50 E-value=5.8e-11 Score=119.82 Aligned_cols=293 Identities=16% Similarity=0.149 Sum_probs=181.5
Q ss_pred ccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHH-HHHHHHHHHHHh-hcCCCCHHHHHHHHcchhHHH
Q 012823 41 ASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLT-ESSIDMIMRFSR-ASKSATYSGVVADAFGGAGRA 118 (456)
Q Consensus 41 ~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~-~~t~~~l~~~~~-~~~~~~y~~l~~~~~G~~~~~ 118 (456)
.|+++.+...++.++|+|++..| ...+.|.. .++..++.+.+. ........|..+ .++......-.++.+||+..+
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~ 78 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGF 78 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchh
Confidence 36789999999999999999999 77777765 555555555555 566667777655 566777778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhhH
Q 012823 119 LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSA 198 (456)
Q Consensus 119 ~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 198 (456)
+......+........+.....+.+...+. ...... .... .......++..-....+..|..++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--~~~~-~~i~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 79 IVGWLYWVAYILSLASVASSFASYLLSLFG----------PDLNPS--PWPQ-FLIAIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTT----------GGGTCS--HHHH-HHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cccceeEEEeeccccccccchhhhhhhccc----------cccccc--cchh-eeeeecccccceEeeechhhhhhhhhh
Confidence 999999888888777777778877754431 100000 1111 121112222333333445555566655
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhcCCCC-----CCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCcch
Q 012823 199 LSVGLAI-VFVVITAGVAIVKTIDGSIS-----MPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQI 272 (456)
Q Consensus 199 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~ 272 (456)
....+.+ ..+++.+...+....++..+ .+...|. .+..++.++....|+|.+........+|+|| |+.
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~i 219 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS-----GWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTI 219 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS-----SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHH
T ss_pred hhhhhhhhhhhhhheeEEEeeecccccccccccccccCCc-----cccchhhHHHHHHhhcccccccccccccccc-hhh
Confidence 5543333 12222222223322222111 0111221 2234678899999999999999999999998 789
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcCCCcch---hh---hhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 012823 273 KSIVRTSITLCSTVYITTSFFGLLLFGDRTLD---DV---LANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLR 346 (456)
Q Consensus 273 ~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~---~i---l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~ 346 (456)
+|++..+..++.++|...........+++..+ +. ...+.+.-+ +++...+..+...+..+.+.........
T Consensus 220 p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~s 296 (426)
T PF13520_consen 220 PRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG---GSWLAIIVSIAAILSLFGSINAFIFGAS 296 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH---CCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc---ccccccccccccccccccccchhhcchh
Confidence 99999999999999999988777666543211 11 111101000 1345556666777777777777777777
Q ss_pred HHHHHhcCCCC
Q 012823 347 LNLDGLLFPYA 357 (456)
Q Consensus 347 ~~~~~~~~~~~ 357 (456)
+.+.....++.
T Consensus 297 R~l~~~a~d~~ 307 (426)
T PF13520_consen 297 RLLYAMARDGV 307 (426)
T ss_dssp HHHHHHHHTTS
T ss_pred hcccccccccc
Confidence 77666654433
No 35
>PRK10836 lysine transporter; Provisional
Probab=99.50 E-value=5.2e-10 Score=114.66 Aligned_cols=243 Identities=12% Similarity=0.078 Sum_probs=141.3
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHcc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR-ASKSATYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP-~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~-~~~~~~y~~l~~~~~G 113 (456)
+.+|+.+.++.....+++++|+|++..| .+.+++|-...++..++.+++.......+.|... .++.......+++.+|
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g 91 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVE 91 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcC
Confidence 5678999999999999999999999999 4677888755688888888888888888888776 3555666777788999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccch
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDV-LSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (456)
+...+++.....+.... +.......++. +....+ +. ....+.. ..++++-.......+.
T Consensus 92 ~~~gf~~Gw~~~~~~~~-~~a~~~~a~~~~~~~~~~--------------~~---~~~~~~~--~~~~~~~~lN~~gv~~ 151 (489)
T PRK10836 92 EGFGFALGWNYWYNWAV-TIAVDLVAAQLVMSWWFP--------------DT---PGWIWSA--LFLGVIFLLNYISVRG 151 (489)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCC--------------CC---chHHHHH--HHHHHHHHHHHHcchh
Confidence 88888877766553222 22222222222 211111 10 0011111 1111111222223333
Q ss_pred hhhhhHHHHHHHHHH--HHHHHHHHH-HHhhcCCCC-CCCCCC--cccccchhhhHHHHhhhhhhhhhhhhchhHHHhhc
Q 012823 193 LRYTSALSVGLAIVF--VVITAGVAI-VKTIDGSIS-MPCLLP--EISKQASFWKLFTTFPVLVTAYICHHNIHPIENEL 266 (456)
Q Consensus 193 l~~~s~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~-~~~~~p--~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m 266 (456)
.+..+.+....-+.. .++.+++.. ....++... ....+. ......++..+..+.....|+|.+...+....+|+
T Consensus 152 ~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 231 (489)
T PRK10836 152 FGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES 231 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh
Confidence 333222211111111 111111111 111111100 001110 00001234455566666779999999999999999
Q ss_pred CCCc-chhHHHHHHHHHHHHHHHHHHhhhhhhc
Q 012823 267 KDPT-QIKSIVRTSITLCSTVYITTSFFGLLLF 298 (456)
Q Consensus 267 ~~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~f 298 (456)
|||+ +.||++..++..+.++|...........
T Consensus 232 knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 232 EDPAKNIPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 9998 6899999999999999998876554443
No 36
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.49 E-value=1.6e-10 Score=117.06 Aligned_cols=239 Identities=17% Similarity=0.123 Sum_probs=138.8
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHH-HHhhC-hHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCHHHHHH
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPAT-VKELG-LIPGLIMIVLVGWLTESSIDMIMRFSRA----SKSATYSGVVA 109 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-f~~~G-~~~gii~li~~~~l~~~t~~~l~~~~~~----~~~~~y~~l~~ 109 (456)
+.+|+.+.++.+...++.++|+|++..|.. ...+| ....++..++.+++.........|.... .+.+.| .+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y---~~ 81 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVY---LK 81 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceee---HH
Confidence 457899999999999999999999999876 44555 3335556667777777777777776542 344455 56
Q ss_pred HHcchhHHHHHHHHHHH-HHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccccc
Q 012823 110 DAFGGAGRALLQVCIVV-NNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFR 188 (456)
Q Consensus 110 ~~~G~~~~~~~~~~~~~-~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 188 (456)
+.+||...++....... ........+....++.+....+ .... ...... ...+..+-....+
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~--------------~~~~-~~~~~~--~~~~~~~~~ln~~ 144 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP--------------IDPL-LGKFIA--AGLIIAFMLLHLR 144 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CchH-HHHHHH--HHHHHHHHHHHHh
Confidence 88999888877775442 2222333444444444421111 0000 111111 1111222222334
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCC
Q 012823 189 RVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKD 268 (456)
Q Consensus 189 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~ 268 (456)
..+....++.+.....+..+++.+...+.....++...+...+ .....++.++..++....|+|.+........+|+||
T Consensus 145 gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 223 (445)
T PRK11357 145 SVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKN 223 (445)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcC
Confidence 4444444444333222222211111112111111111111111 011122556778889999999999999999999999
Q ss_pred Cc-chhHHHHHHHHHHHHHHHHHHhhhh
Q 012823 269 PT-QIKSIVRTSITLCSTVYITTSFFGL 295 (456)
Q Consensus 269 p~-~~~~~~~~s~~i~~~~Y~~~g~~gy 295 (456)
|+ +.||++..+..++.++|........
T Consensus 224 P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 224 PGKTMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 5799999999999999988766543
No 37
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.48 E-value=8.4e-10 Score=112.98 Aligned_cols=237 Identities=11% Similarity=0.073 Sum_probs=150.2
Q ss_pred CCCccHHHHHHHHHHHHHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHcch
Q 012823 38 IDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK--SATYSGVVADAFGG 114 (456)
Q Consensus 38 ~~~~s~~~~~~~li~~~iG~GiL~lP-~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~--~~~y~~l~~~~~G~ 114 (456)
+|+.+.++.....++.++|+|++..| .+.+++|-...++..++.+++.......+.|.....+ ...|...+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 47789999999999999999999887 6677888654566777788888888888888776544 34788899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 012823 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (456)
...+++.....+.....+.......++.+....++ . . ...+..+ ..++.-+...+..+...
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----------~-~~~~~~~--~~~~~~~in~~gv~~~~ 141 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK------V----------N-PAVWIAI--FYVFIVIINLFGVKGYG 141 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------C----------C-HHHHHHH--HHHHHHHHHHhcchHHH
Confidence 99999988887776666666666666555321110 0 0 0111111 11122222334445554
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----------CCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHh
Q 012823 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMP----------CLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIEN 264 (456)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~ 264 (456)
.++.+.....+..++..+...+.....+..... ...++......+.++..++....|+|.+........+
T Consensus 142 ~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~ 221 (478)
T TIGR00913 142 EAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAG 221 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 444433211111111111111111111110100 0011100011256788889999999999999999999
Q ss_pred hcCCCc-chhHHHHHHHHHHHHHHHHHHhh
Q 012823 265 ELKDPT-QIKSIVRTSITLCSTVYITTSFF 293 (456)
Q Consensus 265 ~m~~p~-~~~~~~~~s~~i~~~~Y~~~g~~ 293 (456)
|+|||+ +.||++..+..++.++|....+.
T Consensus 222 E~knP~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 222 EAANPRKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 68999999999999999987544
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.47 E-value=5.1e-10 Score=113.43 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=146.3
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHcch
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR-ASKSATYSGVVADAFGG 114 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~-~~~~~~y~~l~~~~~G~ 114 (456)
+.+|+.+.++.+...++.++|......+.++.++|+..-++..++.+++.......+.|... .++.......+++.+||
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~ 83 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGP 83 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCc
Confidence 56788999999999999999855556688889999865555666666666666667777665 34455666778999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 012823 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (456)
+..++......+........+....++.+....++ . ....... ..+.++-+...+..+...
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~--------------~---~~~~~~~--~~~~~~~~ln~~g~~~~~ 144 (442)
T TIGR00908 84 WGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV--------------G---PGWLAAL--VFYIVFIGINILGVGEAA 144 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------C---chhHHHH--HHHHHHHHHHHHHHHHHH
Confidence 99999888887776666777777777776444321 0 0111111 111222222333444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----ccc--ccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCC
Q 012823 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLP----EIS--KQASFWKLFTTFPVLVTAYICHHNIHPIENELKD 268 (456)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~--~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~ 268 (456)
.++....++.+..+++... .. ..+.+..+..+ +.+ ....+.+++.++....|+|.+........+|+||
T Consensus 145 ~i~~~~~~~~~~~l~i~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~ 219 (442)
T TIGR00908 145 KLEFVVTAVAIIALGVFIG--AM---VPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKN 219 (442)
T ss_pred hHHHHHHHHHHHHHHHHHH--HH---hccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4443333222111111111 10 01111100000 000 0123456778888889999999999999999999
Q ss_pred Cc-chhHHHHHHHHHHHHHHHHHHhh
Q 012823 269 PT-QIKSIVRTSITLCSTVYITTSFF 293 (456)
Q Consensus 269 p~-~~~~~~~~s~~i~~~~Y~~~g~~ 293 (456)
|+ +.+|++..+..++..+|+.....
T Consensus 220 P~r~iprai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 220 PKRDIPRGLIGAILTLLALAAGILVV 245 (442)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHH
Confidence 98 68999999999888888776443
No 39
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.46 E-value=6.4e-11 Score=128.35 Aligned_cols=249 Identities=14% Similarity=0.102 Sum_probs=155.7
Q ss_pred cCCCCccHHHHHHHH-HHHHHhhhhchH-HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Q 012823 36 AGIDGASFSGAVFNL-STTIVGAGIMAL-PATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA--SKSATYSGVVADA 111 (456)
Q Consensus 36 ~~~~~~s~~~~~~~l-i~~~iG~GiL~l-P~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~--~~~~~y~~l~~~~ 111 (456)
++.++.+++++++.- +.+++|+|++.- ++...++|...+++.+++.++++..++.-+.+.... .+..--....++.
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisra 152 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRS 152 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 456789999999988 999999999855 588889998888999999999999999999887764 2333333445889
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 012823 112 FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (456)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 191 (456)
+|+.....+.++..+.....+..|.+..++.+..+++..... ...+. ......+. + .+++++-+......+
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~------~~~~~-~~~~~iia-~-i~l~ll~~In~~Gvk 223 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK------IMVDP-INDIRIYG-T-VTVVVLLGISFAGME 223 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc------cccCc-cccchHHH-H-HHHHHHHHHHHhhHH
Confidence 999988888888888777888888888888876655321000 00001 01111111 1 111222222233445
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC------CCC----CCCCCcccccchhhhHHHHhhhhhhhhhhhhchhH
Q 012823 192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGS------ISM----PCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHP 261 (456)
Q Consensus 192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~ 261 (456)
....++.+.+++.++.++..++..+....+.. ... .+..|.+.. ...+++..++++.++|.+......
T Consensus 224 ~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~--~~~~f~~~~ai~F~A~tGi~agan 301 (953)
T TIGR00930 224 WENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPG--PEGGFFSLFGIFFPSVTGILAGAN 301 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCC--cccHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444432211111111110010000000 000 001111111 112267778888889999999999
Q ss_pred HHhhcCCCc-chhHHHHHHHHHHHHHHHHHHhhhh
Q 012823 262 IENELKDPT-QIKSIVRTSITLCSTVYITTSFFGL 295 (456)
Q Consensus 262 i~~~m~~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy 295 (456)
+.+|+|||+ ..|++...+..+++++|+.+.+...
T Consensus 302 ~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 302 ISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred HHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 6999999999999999999976433
No 40
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.42 E-value=1.4e-10 Score=112.33 Aligned_cols=286 Identities=13% Similarity=0.174 Sum_probs=197.3
Q ss_pred CccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHHHH
Q 012823 40 GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRAL 119 (456)
Q Consensus 40 ~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~ 119 (456)
|.|..|.+..+..+++|+|++.+|....+.+ -.|++..++.+.......++..+..++.+.++..|..++.+||+...+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHH
Confidence 5788999999999999999999998876543 156666777777777777888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhhHH
Q 012823 120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSAL 199 (456)
Q Consensus 120 ~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 199 (456)
+.+...++.+......+...++.++...- .....+......++..-....+.++.+.+.+.+
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~l------------------p~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYLL------------------PETPIWVIILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999988888888888887754321 111122333333344445556778888775554
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCcchhHHHHHH
Q 012823 200 SVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTS 279 (456)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~~~~~~~s 279 (456)
.....+........ ...++.+..+..|-.. .++.++.++.....+.|.+.....-+...+|+|+|.+|....+
T Consensus 142 ~~~~~~i~~~~i~~-----~~~~~~~~~~l~P~~~--~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~ 214 (320)
T PF03845_consen 142 LFPIFLILLLLILL-----LSIPNIDWDNLLPVLE--SGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHHH-----HhcccCCHHHeeCccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 44222222222111 1123344444555433 4566788888888888998888888999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCcchhh-------hhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 012823 280 ITLCSTVYITTSFFGLLLFGDRTLDDV-------LANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGL 352 (456)
Q Consensus 280 ~~i~~~~Y~~~g~~gy~~fG~~~~~~i-------l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~~~~ 352 (456)
..++..+|...-+.....||.+..++. ....+-. ++-+.+..+.-..+....+.+.-...+...+.+.+.
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~---~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 291 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIG---DFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQL 291 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888886422111 0100000 000112223334566677777888888888888887
Q ss_pred cC
Q 012823 353 LF 354 (456)
Q Consensus 353 ~~ 354 (456)
+.
T Consensus 292 f~ 293 (320)
T PF03845_consen 292 FK 293 (320)
T ss_pred hC
Confidence 63
No 41
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.42 E-value=2.7e-09 Score=108.49 Aligned_cols=239 Identities=14% Similarity=0.141 Sum_probs=145.0
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPAT-VKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G 113 (456)
+.+|+.+.++.+...+++++|+|++.+|.. .+.+|- ..++..++.+++.......+.|...+ +......+.+++.+|
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G 84 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLG 84 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 456889999999999999999999999854 667786 46777888888888888888887754 445666677899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
|...++......+.....+.......+..+....+ +. ....+.. ..+++.-....+..+..
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~---~~~~~~~--~~~~l~~~ln~~gv~~~ 145 (457)
T PRK10580 85 PLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP--------------TV---PHWIWVL--SVVLIICAVNLMSVKVF 145 (457)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CC---ChHHHHH--HHHHHHHHHHHccchhH
Confidence 99999988877765544444433444444422221 11 0111111 11122222333344444
Q ss_pred hhhhHHHHHHHHHHHHHH--HHH--HHHHhhcCC-CC-CCCCCCccc-ccchhhhHHHHhhhhhhhhhhhhchhHHHhhc
Q 012823 194 RYTSALSVGLAIVFVVIT--AGV--AIVKTIDGS-IS-MPCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENEL 266 (456)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~--~~~--~~~~~~~~~-~~-~~~~~p~~~-~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m 266 (456)
..++.+...+.+..+++. .++ ......+.. .. ..+.+++-. ...++.++..++....|+|.+........+|+
T Consensus 146 ~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~ 225 (457)
T PRK10580 146 GELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 444433221111111111 111 111111110 00 001111000 01234567888899999999999999999999
Q ss_pred CCCc-chhHHHHHHHHHHHHHHHHHHhhh
Q 012823 267 KDPT-QIKSIVRTSITLCSTVYITTSFFG 294 (456)
Q Consensus 267 ~~p~-~~~~~~~~s~~i~~~~Y~~~g~~g 294 (456)
|||+ +.||++..+...+.++|.......
T Consensus 226 knP~k~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 226 KDPEKSIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 489999888877888887765543
No 42
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.33 E-value=1.1e-08 Score=103.59 Aligned_cols=336 Identities=13% Similarity=0.062 Sum_probs=185.0
Q ss_pred HHHHHhhhhchHHH-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcchhHHHHHHHHHHHHH
Q 012823 51 STTIVGAGIMALPA-TVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGGAGRALLQVCIVVNN 128 (456)
Q Consensus 51 i~~~iG~GiL~lP~-~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~ 128 (456)
+++++|+|++..|- +.+++|. ..++..++.+++.......+.|...+ ++.....+.+++.+||+..+++.....+..
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 82 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW 82 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 57899999999985 7888996 47888888888888888888887754 455677888899999999998888887655
Q ss_pred HHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHH
Q 012823 129 LGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFV 208 (456)
Q Consensus 129 ~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 208 (456)
...........+..+....+ . ...+......++.+-+......+....++.+.....+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--------------~-----~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 83 VLVIPLEANIAAMILHSWVP--------------G-----IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHHhccc--------------c-----CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 54444444434333321111 0 0111111111122222223344444444443332222222
Q ss_pred HHHHHHHHHHhhcCCCC--CC----CCCCc-ccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc-chhHHHHHHH
Q 012823 209 VITAGVAIVKTIDGSIS--MP----CLLPE-ISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTSI 280 (456)
Q Consensus 209 ~~~~~~~~~~~~~~~~~--~~----~~~p~-~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~-~~~~~~~~s~ 280 (456)
+..+...+.. ..+..+ +. +.++. ......+.++..++....|+|.+...+....+|+|||+ +.+|++..+.
T Consensus 144 i~~ii~~~~~-~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~ 222 (446)
T PRK10197 144 LAFIFLGAVA-ISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVI 222 (446)
T ss_pred HHHHHHHHHH-hcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence 2222111211 111111 00 00110 00113456788999999999999999999999999999 5899999999
Q ss_pred HHHHHHHHHHHhhhhhhcCCCcc-----h---hhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 012823 281 TLCSTVYITTSFFGLLLFGDRTL-----D---DVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGL 352 (456)
Q Consensus 281 ~i~~~~Y~~~g~~gy~~fG~~~~-----~---~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~~~~ 352 (456)
..+.++|....+........+.. + ...+.... .....+..+...+..+.+..-..+...+.+...
T Consensus 223 ~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-------~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ 295 (446)
T PRK10197 223 WRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNI-------PHAKLIMDCVILLSVTSCLNSALYTASRMLYSL 295 (446)
T ss_pred HHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999866663332221110 0 11111111 223344455556666666666666676666655
Q ss_pred cCCCCCCCC------CCCcchh-hHHHHHHHHHHHHHhhc--CChHHHHHhhchhhhhhHHHhhhhhHHhhhc
Q 012823 353 LFPYAIPIA------FDNRRFF-AVTAALMGFIFVGANFV--PSIWDAFQFTGATAAVSVGFIFPAAIALRDT 416 (456)
Q Consensus 353 ~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~ia~~~--~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~ 416 (456)
-.++..|+. .+...+. .....+.+...+..... ..++.++++.+.... +.++++.+.+++.|
T Consensus 296 ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l--i~y~~~~~a~i~lr 366 (446)
T PRK10197 296 SRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIAL--LVYLVIAVSQLRMR 366 (446)
T ss_pred HcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 433222210 1111111 11111112222221112 236667776554444 66777777777644
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.30 E-value=2.8e-08 Score=101.48 Aligned_cols=364 Identities=12% Similarity=0.063 Sum_probs=198.8
Q ss_pred cCCCCccHHH-HHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHcc
Q 012823 36 AGIDGASFSG-AVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR-ASKSATYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~-~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~-~~~~~~y~~l~~~~~G 113 (456)
+.+++.+.++ .....++.++|.|++.+|......+ ....+..++.+++.........|..+ .++...+.+-.++.+|
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g 87 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALG 87 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcC
Confidence 5567778888 8888899999999999998877665 22223345555555555566666555 3344456666799999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
|+..++......+.............++.+..+.+... ... .. .-.........+...-+...+..+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~---~~~~~~~~~~~~~~~~~ln~~G~~~~ 156 (466)
T COG0531 88 PRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-------LLS-IG---PLLIILIALALIALLTLLNLRGIKAS 156 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-------hhc-CC---chHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88888888888887777777777777765544443100 000 00 00111222222223333334455555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc-ch
Q 012823 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QI 272 (456)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~-~~ 272 (456)
...+.+..+..+...++.....+........+... +.......+..+..++....++|.+-.......+|+|||+ +.
T Consensus 157 ~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i 234 (466)
T COG0531 157 AKINSIITILKIIILLIFIILGLFAFGFSNGNLFA--PFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCC--CcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence 55555444333333333322222222221111111 1010222344688889999999999999999999999996 67
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcCCC-cchhhhhCCCCCC--CCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 012823 273 KSIVRTSITLCSTVYITTSFFGLLLFGDR-TLDDVLANFDGDL--GIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNL 349 (456)
Q Consensus 273 ~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~-~~~~il~~~~~~~--~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~ 349 (456)
+|++..++..+.++|...........+++ .... ..+.|-.+ ....+.+...+..+...+..+.+.........+..
T Consensus 235 p~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~ 313 (466)
T COG0531 235 PRAIILSLLIVLILYILGALVIVGVLPAGDLAAS-APSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhcc-CCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888776642 1111 00011000 00001244445555566666666544444444444
Q ss_pred HHhcCCCCCCC-----C--CCCcchhhHHHHHHHHHHHHHhhc----CChHHHHHhhchhhhhhHHHhhhhhHHhhhcCC
Q 012823 350 DGLLFPYAIPI-----A--FDNRRFFAVTAALMGFIFVGANFV----PSIWDAFQFTGATAAVSVGFIFPAAIALRDTHG 418 (456)
Q Consensus 350 ~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~ia~~~----~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~ 418 (456)
...-.++.-|. + .+...+...... +.+..+.... ..+..+.++ +.....+.|+++.+..++.+++
T Consensus 314 ~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~--ii~~~l~~~~~~~~~~~~~l~~~--~~~~~~~~y~~~~~~~~~~~~~ 389 (466)
T COG0531 314 YAMARDGLLPKFFAKVNPKGRTPVIALILTG--IISLILLLLFPLSSIAFNALVSL--ASVAFLIAYLLVALALLVLRRK 389 (466)
T ss_pred HHHHhCCCccHHHHHhCCCCCCCHHHHHHHH--HHHHHHHHHhhccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 44332221111 0 111111111111 1111122221 234555555 4555577788888888775544
No 44
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.19 E-value=4.1e-10 Score=96.24 Aligned_cols=223 Identities=14% Similarity=0.202 Sum_probs=140.5
Q ss_pred ccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh------------cC--------
Q 012823 41 ASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA------------SK-------- 100 (456)
Q Consensus 41 ~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~------------~~-------- 100 (456)
-|.......+.|.++|+|.|+||.+|+.+||++++.++.+.++++..+...+.++... .+
T Consensus 12 ysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~s 91 (319)
T KOG3832|consen 12 YSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDES 91 (319)
T ss_pred hhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccccc
Confidence 3444556788899999999999999999999999999999999999998888776530 00
Q ss_pred -------------------------------------CCCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012823 101 -------------------------------------SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (456)
Q Consensus 101 -------------------------------------~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l 143 (456)
+.+.++++.+.|.|.+-.++.+++.+++||....|...+-.+.
T Consensus 92 tasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 92 TASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred ccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 2346788889999999999999999999999999987766554
Q ss_pred ccccccC-----cc-CCCcchhhhcccccc------hhHHHHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHH
Q 012823 144 SGAWLNG-----VH-HSGVTEEWFGQHWWT------TRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVIT 211 (456)
Q Consensus 144 ~~~~~~~-----~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~ 211 (456)
-++.+.. +. ..+.+.+.-+.+|-. ..+++..+..+++.+|+.+. ++++.++++++..+..- . ...
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw-~-~~~ 248 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRW-A-AFI 248 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHH-H-hcc
Confidence 4443321 11 111111111111211 11233333444455576553 66777888877663221 1 111
Q ss_pred HHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc
Q 012823 212 AGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT 270 (456)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~ 270 (456)
.+++.-. .+...+....+|.. ..+-++-+.++..+|+|.+|...|.....++.+.
T Consensus 249 ~g~~l~t-mqaeedaa~a~p~a---rc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 249 LGISLAT-MQAEEDAAAAHPPA---RCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred chhhhhh-hhhcccccccCCcc---ccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 1111110 11111111223322 2334445567888999999999999988887665
No 45
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.16 E-value=4.3e-08 Score=95.08 Aligned_cols=356 Identities=15% Similarity=0.142 Sum_probs=208.3
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHcc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR-ASKSATYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL-~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~-~~~~~~y~~l~~~~~G 113 (456)
+.+|+.+.+|.-..-++..+|+|.+ +--.+.+.+|-- -++.-.++|++..+-.+.+.|... ++..+|+.+.+++++|
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG 88 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLG 88 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhc
Confidence 4678999999999999999999987 556788888931 333445667777777777777654 5678899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
+++.++.+....+.-...+++-+..++..++-.+|+. ++|. ....+...+...-+...|....+
T Consensus 89 ~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-------P~Wv---------~al~~~~l~~~~NL~sVk~FGE~ 152 (462)
T COG1113 89 PWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-------PQWV---------FALAAVVLLLAVNLISVKVFGEL 152 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999889999999888874443321 1110 01111122233334445556666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH-HHhhcCCCCCCCCCCccc-----ccchhhhHHHHhhhhhhhhhhhhchhHHHhhcC
Q 012823 194 RYTSALSVGLAIVFVVITAGVAI-VKTIDGSISMPCLLPEIS-----KQASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (456)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~-----~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 267 (456)
.++-.+--+.+++.++ ++++.+ ...+.++.. ....++.. -.+++.+++.++-+.+|||.+...+=....|-|
T Consensus 153 EfWfAlIKV~aIi~~I-v~G~~ll~~g~~~~~~-~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~ 230 (462)
T COG1113 153 EFWFALIKVAAIIAFI-VVGIVLLFGGFGGGGG-AAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAK 230 (462)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhccCCCCC-CccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 5554444433333322 222222 222222111 11111111 114577889999999999999999999999999
Q ss_pred CCcc-hhHHHHHHHHHHHHHHHH-----HHhhhhhhcCCCcchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhh
Q 012823 268 DPTQ-IKSIVRTSITLCSTVYIT-----TSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIV 341 (456)
Q Consensus 268 ~p~~-~~~~~~~s~~i~~~~Y~~-----~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~ 341 (456)
||+| .+|+.+--..=+.+.|.. ..+.-+-.++++ .++..+.+..- +.| ....+.+.......+.+..-.
T Consensus 231 dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~-~SPFV~~f~~i-Gi~---~Aa~i~N~VVLtAa~S~~NSg 305 (462)
T COG1113 231 DPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGED-GSPFVTVFSLI-GIP---FAAGIMNFVVLTAALSALNSG 305 (462)
T ss_pred ChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCC-CCcHHHHHHHc-CCc---ccccceeEEEeechhhccccc
Confidence 9994 667776555545555543 222233233332 22333333221 111 112233333444555566666
Q ss_pred hhHHHHHHHHhcCCCCCCCCCC-------CcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhh--hhhHHHhhhhhHH
Q 012823 342 FFSLRLNLDGLLFPYAIPIAFD-------NRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATA--AVSVGFIFPAAIA 412 (456)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~--~~~~~filP~~~y 412 (456)
.+...+.+..+..+++.|+... ..+-+..+.+....+.++....| ..++.++-+.. .......+=.+.|
T Consensus 306 lystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~ 383 (462)
T COG1113 306 LYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQ 383 (462)
T ss_pred ccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777776654444432111 12234556666677777777777 44444433332 2233444555666
Q ss_pred hhhcC
Q 012823 413 LRDTH 417 (456)
Q Consensus 413 l~~~~ 417 (456)
+|.||
T Consensus 384 l~~rk 388 (462)
T COG1113 384 LKLRK 388 (462)
T ss_pred HHHHh
Confidence 66544
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.13 E-value=4.1e-07 Score=93.07 Aligned_cols=258 Identities=11% Similarity=-0.012 Sum_probs=141.1
Q ss_pred cCCCCccHHHHHHHHHHHH-HhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHc
Q 012823 36 AGIDGASFSGAVFNLSTTI-VGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAF 112 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~-iG~GiL~lP-~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~ 112 (456)
+-+|+.|.++.+..-++.+ +|+|+...+ .+..++|- ..+...++.++........+.|...+ +.......-+++.+
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~ 88 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMG 88 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHc
Confidence 5668899999998888875 899999887 66777776 35666677777777777778887653 34445556678899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccch
Q 012823 113 GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (456)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (456)
||+..++......+................+..+.+.... .+...++.... ............+++.-+...+..+.
T Consensus 89 g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~in~~g~k~ 165 (475)
T TIGR03428 89 GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQI-IGEDPTLTSPS--GAANAVLLGSVLLVLTTVINCIGVEW 165 (475)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccCccccCCC--chHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9998888887777655443333333333333222110000 00000000000 00011111111112222223334455
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc
Q 012823 193 LRYTSALSVGLAIVFVVITAGVAIVKTIDGSISM--PCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT 270 (456)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~ 270 (456)
...++.+.....+..+++.++..+... +.+... ........ ......+..+.....|+|.+........+|+|||+
T Consensus 166 ~~~i~~~~~~~~i~~l~~iii~~~~~~-~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~ 243 (475)
T TIGR03428 166 MSRVNTIGVTCEIVGVLAVIGVLFTHA-QRGPGVVFDTSVTGAS-PGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPR 243 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcceeeecCCCCCC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcc
Confidence 555554444222222222221111111 111100 00000011 11123455566677899999999999999999998
Q ss_pred -chhHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 012823 271 -QIKSIVRTSITLCSTVYITTSFFGLLLFG 299 (456)
Q Consensus 271 -~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 299 (456)
+.||++..+..++.++|..+.+......+
T Consensus 244 r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 244 RVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 68999999999888777666555544444
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.07 E-value=3.6e-07 Score=93.70 Aligned_cols=255 Identities=7% Similarity=-0.030 Sum_probs=128.5
Q ss_pred cCCCCccHHHHHHHHHHHHH-hhhhch-HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHc
Q 012823 36 AGIDGASFSGAVFNLSTTIV-GAGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAF 112 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~i-G~GiL~-lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~ 112 (456)
+.+|+.+.++.+..-+..+. .+|+.. .+.+..++|-...+...++.+++.......+.|...+ ++......-+++++
T Consensus 9 ~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~ 88 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLA 88 (482)
T ss_pred eeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhc
Confidence 45677888888777777442 256654 3567777886555677778888888888888887653 34455566667777
Q ss_pred ch----hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccccc
Q 012823 113 GG----AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFR 188 (456)
Q Consensus 113 G~----~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 188 (456)
|+ ...+++.....+.....+.......++.+....... +.. +.+..+.+ .. ....+......-+....
T Consensus 89 g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~-~~---~~i~~~~~~~~~~in~~ 160 (482)
T TIGR00907 89 PPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT--TPG--REYIPTRW-HI---FGIMIGIHLIHALINSL 160 (482)
T ss_pred ccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC--CCccccCc-hh---hhhHHHHHHHHHHHHHh
Confidence 64 445666555555544444444444444433221100 000 00111111 00 11111111222222223
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-----CCCcccc-cchhhhHHHHhhhhhhhhhhhhchhHH
Q 012823 189 RVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPC-----LLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPI 262 (456)
Q Consensus 189 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~~~-~~~~~~~~~~~~~~~faf~~h~~~~~i 262 (456)
..|.+..++.+.....+...++.....+.. ..+..+..+ ..|+... ..+...+..++....|+|.+.......
T Consensus 161 g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~ 239 (482)
T TIGR00907 161 PTKWLPRITSSAAYWSLLGFLTICITLLAC-KSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHM 239 (482)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHH
Confidence 334444443332222211111111111111 111111100 0111000 011224555566677999999999999
Q ss_pred HhhcCCCc-chhHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 012823 263 ENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFG 299 (456)
Q Consensus 263 ~~~m~~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 299 (456)
.+|+|||+ +.||++..+..++.+++....+.-+...+
T Consensus 240 a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 240 AEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred HHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999998 68999999988777665554444333333
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.07 E-value=3.5e-06 Score=86.64 Aligned_cols=247 Identities=10% Similarity=0.103 Sum_probs=129.0
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHHhhcC--CCCHHHHHHHHc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTE-SSIDMIMRFSRASK--SATYSGVVADAF 112 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~-~t~~~l~~~~~~~~--~~~y~~l~~~~~ 112 (456)
+.+|+.|.++.+...++.++|.+ .+|.++.+.|.. +++..++.+++.. -....+.|.....+ ...-..-.++++
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 44678999999999999999976 568888888864 5555555555533 34455667655433 355556678999
Q ss_pred chhHHHHHHHHHHHHHHHH---HHHHH-HHhhcc-cccccccCccCCCcchhhhcccccchh-HHHHHHHHHHHhhcccc
Q 012823 113 GGAGRALLQVCIVVNNLGM---LVVYM-IIIGDV-LSGAWLNGVHHSGVTEEWFGQHWWTTR-FTLLLLTTLFVFLPLIS 186 (456)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~---~~~y~-~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~ 186 (456)
|++..++............ ...+. ...... ...... ..+. ....... ......+..+.++-...
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~a~~~~~~~t~vn 150 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTT---------QTWH-FLGLNSTQVVGILAVIWMILVTFVA 150 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchh---------hhhh-hhcccchHHHHHHHHHHHHHHHHHH
Confidence 9888876543332221111 11110 000000 100000 0000 0000111 11111111112233344
Q ss_pred ccccchhhhhhHHHHHHHHHHHH-HHHHHHHHHhhcC-CCCCCCC---C-Cc-ccccchhhhHHHHhhhhhhhhhhhhch
Q 012823 187 FRRVDSLRYTSALSVGLAIVFVV-ITAGVAIVKTIDG-SISMPCL---L-PE-ISKQASFWKLFTTFPVLVTAYICHHNI 259 (456)
Q Consensus 187 ~~~l~~l~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~---~-p~-~~~~~~~~~~~~~~~~~~faf~~h~~~ 259 (456)
.+..+..+.++.++....+...+ ..+.........+ +...+.. . +. .....+..++..++....|+|.+....
T Consensus 151 ~~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~ 230 (496)
T PRK15238 151 SKGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAV 230 (496)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHH
Confidence 45666666665543322111111 1110011111111 1111110 0 00 001111235667778889999999999
Q ss_pred hHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHhhhh
Q 012823 260 HPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGL 295 (456)
Q Consensus 260 ~~i~~~m~~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy 295 (456)
....+|+|||+ +.||++..+...+.++|....+...
T Consensus 231 ~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 231 GGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred HHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 6999999999999999998655443
No 49
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.03 E-value=8.8e-07 Score=87.97 Aligned_cols=354 Identities=13% Similarity=0.111 Sum_probs=217.6
Q ss_pred CCCCccHHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcch
Q 012823 37 GIDGASFSGAVFNLSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGG 114 (456)
Q Consensus 37 ~~~~~s~~~~~~~li~~~iG~GiL-~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~ 114 (456)
-+|+....+....-++..+|+|.+ +.-.+..++|-...++.-++++.+.+....-+.|....-+ ..++.+.+.+...+
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdp 121 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDP 121 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCc
Confidence 668999999999999999999998 6789999999998899999999999999999999887544 44599999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHH-HHHHHHHhhccccccccchh
Q 012823 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLL-LLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pl~~~~~l~~l 193 (456)
-..........+.-.-.+..-+..++..+ +.|.++. .....|. .+..+++.+-+.-.|.....
T Consensus 122 a~GFa~gWnYw~~w~v~~~~El~aa~~vi--------------~yW~p~~--v~~~~w~~iF~~~i~~iN~~~Vk~fGE~ 185 (541)
T COG0833 122 AFGFALGWNYWLNWAVTLPLELTAASLVI--------------QYWFPDT--VPPWIWIAIFLVLIFLLNLFGVKGFGET 185 (541)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhh--------------hhhcCCC--CChHHHHHHHHHHHHHHHHhccccccee
Confidence 88888888888877777777777777666 3343211 0111222 22222233334445555444
Q ss_pred hhh-hHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCC--CcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCC
Q 012823 194 RYT-SALSVGLAIVFVVITAGVAIVKTIDGSIS-MPCLL--PEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP 269 (456)
Q Consensus 194 ~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p 269 (456)
.++ |.+-++..+.+.++.+ +.......++.. ..+.+ |. .-..++.++...+-+..|+|.+...+--...|-+||
T Consensus 186 Efw~s~iKV~~ii~Fii~gi-i~~~Gg~~~~~~ig~~yw~~pg-~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP 263 (541)
T COG0833 186 EFWFSSIKVLTIIGFIILGI-IIICGGGPTHGYIGFNYWHDPG-AFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP 263 (541)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCCCcceeeecCCC-CCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc
Confidence 443 3333221111111111 111211111100 00111 10 111347888899999999999999999999999999
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHhhhhh--hcCCC----------cchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q 012823 270 T-QIKSIVRTSITLCSTVYITTSFFGLL--LFGDR----------TLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLML 336 (456)
Q Consensus 270 ~-~~~~~~~~s~~i~~~~Y~~~g~~gy~--~fG~~----------~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 336 (456)
+ ..||++.-...=+.+.|+..-++--. .|.|. ..++....+.+. ++ ..+..+.+....++++.
T Consensus 264 ~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~-Gi---~~~~~imNaVIL~svlS 339 (541)
T COG0833 264 RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNA-GI---PVAASIMNAVILTSVLS 339 (541)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhc-CC---ccchHHHHHHHHHHHHH
Confidence 8 58899988888777777764443222 23331 112333333222 12 23456677777777777
Q ss_pred hhhhhhhHHHHHHHHhcCCCCCCCCC-------CCcchhhHHHHHHHHHHHHHhhcC--ChHHHHHhhchhhhhhHHHhh
Q 012823 337 VFPIVFFSLRLNLDGLLFPYAIPIAF-------DNRRFFAVTAALMGFIFVGANFVP--SIWDAFQFTGATAAVSVGFIF 407 (456)
Q Consensus 337 s~p~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ia~~~~--~~~~i~~l~Ga~~~~~~~fil 407 (456)
+-.-..+...+.+..+...++.|+-. ....-+..+..+.+++++-+..-. -+.-++++.|... +++.+-
T Consensus 340 a~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~ 417 (541)
T COG0833 340 AANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGS 417 (541)
T ss_pred HhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHH
Confidence 77888888888888887666654321 112223444444445544444422 2455566655333 333444
Q ss_pred hhhHHhh
Q 012823 408 PAAIALR 414 (456)
Q Consensus 408 P~~~yl~ 414 (456)
=++.|++
T Consensus 418 I~~shir 424 (541)
T COG0833 418 ICLSHIR 424 (541)
T ss_pred HHHHHHH
Confidence 4555665
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.00 E-value=5.6e-08 Score=99.22 Aligned_cols=366 Identities=13% Similarity=0.013 Sum_probs=213.7
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchH-HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMAL-PATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS--ATYSGVVADAF 112 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~l-P~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~--~~y~~l~~~~~ 112 (456)
+-+|+.+.++-...-++.++|+|++-. ..+..+.|-..-++..++.+.....+..-+.|...+-++ .++...+++..
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i 106 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFV 106 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeee
Confidence 667889999999999999999999965 678888887777777778888888888888887765443 56666678899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccch
Q 012823 113 GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (456)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (456)
|+.....+..-..+...-.+..-....+..++.... ........+..+.. -.+......++++.+...+-.-.
T Consensus 107 ~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~~~~~~~-----~~~~~fla~~v~in~~gv~~~ge 179 (554)
T KOG1286|consen 107 GESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILVDTVNPG-----GWIPDFLAFILIINLFGVLAYGE 179 (554)
T ss_pred CcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccccccCCCCC-----ccHHHHHHHHHHHHHHHHhhccc
Confidence 999998888888888777777777777777654430 00000000000000 00111112222222333333222
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCCC--CcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcC
Q 012823 193 LRYTSALSVGLAIVFVVITAGVAIVKTIDGS---ISMPCLL--PEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (456)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 267 (456)
.++...+..+++.+-.++...+......+++ +...+.+ |.--....+.++..++-+..|+|.+...+-...+|-|
T Consensus 180 ~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~k 259 (554)
T KOG1286|consen 180 VEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAK 259 (554)
T ss_pred eeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 2222222221111111111111111111211 1111111 1111112377889999999999999999999999999
Q ss_pred CCc-chhHHHHHHHHHHHHHHHHHHhhhhhh--cCCC-cchhh-----hh-CCCCCCCCCcccHHHHHHHHHHHHHHHHh
Q 012823 268 DPT-QIKSIVRTSITLCSTVYITTSFFGLLL--FGDR-TLDDV-----LA-NFDGDLGIPYSSLLDDVVRVSYGIHLMLV 337 (456)
Q Consensus 268 ~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~--fG~~-~~~~i-----l~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~s 337 (456)
||+ ..|++...+...++.+|....+.--+. |.+. ..++. .. ... + +....+..+.++...+.+..+
T Consensus 260 NP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~-~---~~~k~~~~ivna~iL~~~~s~ 335 (554)
T KOG1286|consen 260 NPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIG-N---AGAKYLPHIVNAGILIGLLSS 335 (554)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHh-c---cCccccchhhhHHHHHHHHHH
Confidence 998 689999999999999999988765442 3221 11111 00 000 0 011222346777788888888
Q ss_pred hhhhhhHHHHHHHHhcCCCCCCCC----CCCcchhhHHHHHHHHHHHHHhhcCC-----hHHHHHhhchhhhhhHHHhhh
Q 012823 338 FPIVFFSLRLNLDGLLFPYAIPIA----FDNRRFFAVTAALMGFIFVGANFVPS-----IWDAFQFTGATAAVSVGFIFP 408 (456)
Q Consensus 338 ~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ia~~~~~-----~~~i~~l~Ga~~~~~~~filP 408 (456)
.....++.-+.+..+...+..|+- .+..+-+...++..+...+.++.... ++.++++.|.-+ .+++..=
T Consensus 336 ~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~t--l~~w~~i 413 (554)
T KOG1286|consen 336 LNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGT--LFAWTLV 413 (554)
T ss_pred HHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHH--HHHHHHH
Confidence 888889988888877654444321 11122233334444555555554443 577888866444 4444555
Q ss_pred hhHHhh
Q 012823 409 AAIALR 414 (456)
Q Consensus 409 ~~~yl~ 414 (456)
++.|++
T Consensus 414 ~~~~i~ 419 (554)
T KOG1286|consen 414 ALSHLR 419 (554)
T ss_pred HHHHee
Confidence 555555
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.96 E-value=7.5e-06 Score=84.25 Aligned_cols=234 Identities=13% Similarity=0.104 Sum_probs=113.3
Q ss_pred CCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHH--HHHHHHHHHhh-c-CCCCHHHHHHHHcc
Q 012823 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTES--SIDMIMRFSRA-S-KSATYSGVVADAFG 113 (456)
Q Consensus 38 ~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~--t~~~l~~~~~~-~-~~~~y~~l~~~~~G 113 (456)
++|.|.++.+...+..+. ++..+| ++.+.|+ +.+...+.+.+... .+....|.... + +......-+++++|
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 466888877776666665 556888 5667784 44444444444322 45556665542 2 33344445699999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
++..++......+................+...... .. .+.. .....+..+..+...-+...+..+..
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~--------~~-~~~~---~~~~~i~~l~i~~~~t~~n~~G~k~~ 145 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF--------PA-LNED---PIIKFIAALIIFWALAFSQFGGTKRT 145 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------ch-hccC---cHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 988877655555443321111111111101000000 00 0000 00111111111112222233344444
Q ss_pred hhhhHHHHHHHHHH-HHHHHHHHHHHhhcCCCC-CC----CCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcC
Q 012823 194 RYTSALSVGLAIVF-VVITAGVAIVKTIDGSIS-MP----CLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (456)
Q Consensus 194 ~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~----~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 267 (456)
..++.++.+..... .++.+.+.......+... .+ ...|+.. + .+....+....|+|.+-.......+|+|
T Consensus 146 ~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~---~-~~~~~~~~~~~faf~G~E~~a~~a~E~k 221 (507)
T TIGR00910 146 AKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFS---K-VGTLVVFVAFIGAYMGVEASASHINELE 221 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcc---c-ccHHHHHHHHHHHHhcHHHHHHHHHHcc
Confidence 44433322111111 111111111222222211 11 1122211 1 1223344556899999999999999999
Q ss_pred CCc-chhHHHHHHHHHHHHHHHHHHh
Q 012823 268 DPT-QIKSIVRTSITLCSTVYITTSF 292 (456)
Q Consensus 268 ~p~-~~~~~~~~s~~i~~~~Y~~~g~ 292 (456)
||+ ++||++..+..++.++|....+
T Consensus 222 nP~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 222 NPGRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHH
Confidence 998 6999999999999999876444
No 52
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.90 E-value=1.9e-05 Score=80.86 Aligned_cols=52 Identities=4% Similarity=0.027 Sum_probs=44.3
Q ss_pred hhhhhhhhhhchhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 012823 248 VLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFG 299 (456)
Q Consensus 248 ~~~faf~~h~~~~~i~~~m~~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 299 (456)
.+.++|.+-.......+|+|||+ +.+|++..+..++.++|....+......+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45789999999999999999998 69999999999999999886666544443
No 53
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.81 E-value=6.2e-06 Score=76.77 Aligned_cols=102 Identities=21% Similarity=0.283 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhhhhchHHHH---HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHHHH
Q 012823 43 FSGAVFNLSTTIVGAGIMALPAT---VKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRAL 119 (456)
Q Consensus 43 ~~~~~~~li~~~iG~GiL~lP~~---f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~ 119 (456)
..+..+..+.+++|+|.=+==-- |.+-|+. |....++++++...++....+..++-+.++|.|.-++.+|++...+
T Consensus 5 ~~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki 83 (349)
T COG3949 5 FMRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKI 83 (349)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHH
Confidence 34556778889999998764433 3355775 8888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Q 012823 120 LQVCIVVNNLGMLVVYMIIIGDVLSG 145 (456)
Q Consensus 120 ~~~~~~~~~~g~~~~y~~~~~~~l~~ 145 (456)
.|..+.+.+++.++.-+...++.+++
T Consensus 84 ~d~~iif~lf~~~vVM~AGags~~~e 109 (349)
T COG3949 84 IDIIIIFFLFSTAVVMLAGAGSLLEE 109 (349)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHH
Confidence 99999999999999999988877754
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.67 E-value=5.8e-05 Score=76.43 Aligned_cols=356 Identities=14% Similarity=0.067 Sum_probs=170.8
Q ss_pred CCccHHHHHHHHHHHHHhhhhchHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhH
Q 012823 39 DGASFSGAVFNLSTTIVGAGIMALPATVKE--LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAG 116 (456)
Q Consensus 39 ~~~s~~~~~~~li~~~iG~GiL~lP~~f~~--~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~ 116 (456)
|+.++++-+..-.+..+...-+........ .++.-+++..++...+...-..+......+.+ -++..+.+..||++|
T Consensus 12 R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~G-l~~~v~sR~~FG~~G 90 (442)
T TIGR00800 12 RTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYG-LPFPVLSRASFGIYG 90 (442)
T ss_pred CCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhC-CCcchhhhhhhhhhH
Confidence 445666655555555554444444433332 34555555555554444444444444444443 356678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhh
Q 012823 117 RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYT 196 (456)
Q Consensus 117 ~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~ 196 (456)
..+..++..+...|=...-....++.+..++....... ...++. .+.......++...+.+++......+-.+..
T Consensus 91 s~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~----~~~~~~-~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~ 165 (442)
T TIGR00800 91 SLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGY----LHLGNG-MTTLELICFIIFWALVLVFLFFFGYKIRHLF 165 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc----cccCCc-ccHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999888888888888877655543210000 000000 0111222222333344443333333333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhh-hhhhchhHHHhhcCCCcchhHH
Q 012823 197 SALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAY-ICHHNIHPIENELKDPTQIKSI 275 (456)
Q Consensus 197 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf-~~h~~~~~i~~~m~~p~~~~~~ 275 (456)
...+..... .++........+. .+..+.....+..+.......+..++...+-.+ ..-.+.+...+.+|++++-.+.
T Consensus 166 ~~~a~~~~~-~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~~ 243 (442)
T TIGR00800 166 EWLAVVPPF-AAFGMLIWALSKA-HGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIWG 243 (442)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHc-CCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHHH
Confidence 333331111 1111111111111 111111111111111233455555555543333 3455889999999998876667
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh----cCCCcch--hhhhCCCCCCCCCcccHHHH---HHHHHHHHHHH-HhhhhhhhHH
Q 012823 276 VRTSITLCSTVYITTSFFGLLL----FGDRTLD--DVLANFDGDLGIPYSSLLDD---VVRVSYGIHLM-LVFPIVFFSL 345 (456)
Q Consensus 276 ~~~s~~i~~~~Y~~~g~~gy~~----fG~~~~~--~il~~~~~~~~~~~~~~~~~---~~~i~~~i~~~-~s~p~~~~~~ 345 (456)
...++.........+|..+-.. +|+...+ +....+.... ...+.. ..+++..+..+ ...-...++.
T Consensus 244 ~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~----~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~ 319 (442)
T TIGR00800 244 QFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLT----YAVGARAVFGFGFCFVVAQLSTNISANSYSA 319 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccc----hhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 7788888888888888887765 7765332 2223322210 011111 11122222222 2444555666
Q ss_pred HHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHH-----hhcCChHHHHHhhchhhhhhHHHhhhhhHHhh
Q 012823 346 RLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGA-----NFVPSIWDAFQFTGATAAVSVGFIFPAAIALR 414 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia-----~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~ 414 (456)
...+.+++ ++.. +.+|..... .+.+.+++ -+.+.+.+++.+.|.......+..+-=++..|
T Consensus 320 ~l~l~~l~-~~~~----~~~r~~~i~---~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI~l~Dy~~~r 385 (442)
T TIGR00800 320 GLDIAALL-PKYI----KIKRGSLIC---AIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGVMIADYFVVR 385 (442)
T ss_pred HHHHHHhC-cCcc----ccchHHHHH---HHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHHHHHhheeEEe
Confidence 66666665 2221 122222221 12222222 12335666888888877776666555544433
No 55
>PRK11375 allantoin permease; Provisional
Probab=98.65 E-value=0.0001 Score=75.11 Aligned_cols=322 Identities=9% Similarity=0.012 Sum_probs=152.6
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHHHHHHHHHH-HHHHHHHHHHHHHhhccccccc
Q 012823 69 LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIV-VNNLGMLVVYMIIIGDVLSGAW 147 (456)
Q Consensus 69 ~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~-~~~~g~~~~y~~~~~~~l~~~~ 147 (456)
.++.-+++..++-..+...-..+..+...++ .-++.-+++..||++|..+..++.. +...|=...-....++.+..++
T Consensus 57 Ls~~~ai~ai~lG~~i~~~~~~l~g~~G~~~-Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l 135 (484)
T PRK11375 57 LSTFSIMLAIILSAFFIAAVMVLNGAAGSKY-GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILI 135 (484)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccccc-CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444443333333333333 4478889999999999888777774 3444444444444444443322
Q ss_pred ----ccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 012823 148 ----LNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGS 223 (456)
Q Consensus 148 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (456)
+...+.. +.++............++..++..++.. ...+.++++..+...+....++......+... +
T Consensus 136 ~~i~~~~~~~~----~~~~~~g~~~~~~i~~~i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~--g- 207 (484)
T PRK11375 136 GKIWPGFLTLG----GDFTLLGLSLPGLITFLIFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLV--G- 207 (484)
T ss_pred HHhcccccccc----cccccCCCcHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--C-
Confidence 2111100 0000011112222322233344455443 34455555544444222222222222222222 1
Q ss_pred CCCC-CCCCc--ccccchhhhHHHHhhhhhhhhh-hhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhh----h
Q 012823 224 ISMP-CLLPE--ISKQASFWKLFTTFPVLVTAYI-CHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFG----L 295 (456)
Q Consensus 224 ~~~~-~~~p~--~~~~~~~~~~~~~~~~~~faf~-~h~~~~~i~~~m~~p~~~~~~~~~s~~i~~~~Y~~~g~~g----y 295 (456)
.... +..|. .+.......+..++...+-++. .-.+.|...|..|++++-.+....+..+...+...+|+.. .
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~ 287 (484)
T PRK11375 208 IGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGAS 287 (484)
T ss_pred CchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11111 1111123445555555444555 4448899999999988766666667666666555455443 3
Q ss_pred hhcCCCcch--hhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHhcCCCCCCCCCCCcchhhHHH
Q 012823 296 LLFGDRTLD--DVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVF-PIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTA 372 (456)
Q Consensus 296 ~~fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (456)
..+|+...+ +++..+++ ........+.+.+....+- ....++....+.+++.+ +. + +|+.. .
T Consensus 288 ~~~g~~~~dp~~i~~~~~~-------~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk-~i----~-~~~~~--~ 352 (484)
T PRK11375 288 IHYGADTWNVLDIVQRWDS-------LFASFFAVLVILMTTISTNATGNIIPAGYQIAALAPT-KL----T-YKNGV--L 352 (484)
T ss_pred HHhCCCcCCHHHHHHHhcc-------hHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcC-cc----c-hhhHH--H
Confidence 456654322 22332211 1233334444455555553 35777777777777632 21 1 12221 1
Q ss_pred HHHHHHHHHHh--hcCC---hHHHHHhhchhhhhhHHHhhhhhHHhh
Q 012823 373 ALMGFIFVGAN--FVPS---IWDAFQFTGATAAVSVGFIFPAAIALR 414 (456)
Q Consensus 373 ~~~~~~~~ia~--~~~~---~~~i~~l~Ga~~~~~~~filP~~~yl~ 414 (456)
+..+++.+++. .+.+ +..++++.|++.+.+.+..+-=++..|
T Consensus 353 i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi~DY~i~r 399 (484)
T PRK11375 353 IASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFVVM 399 (484)
T ss_pred HHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhheeEe
Confidence 22222333332 2233 788888888888877766665544333
No 56
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.63 E-value=3.6e-07 Score=93.64 Aligned_cols=238 Identities=14% Similarity=0.149 Sum_probs=139.4
Q ss_pred HHHHHHhhhhch-HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcchhHHHHHHHHHHHH
Q 012823 50 LSTTIVGAGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGGAGRALLQVCIVVN 127 (456)
Q Consensus 50 li~~~iG~GiL~-lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~~~~~ 127 (456)
-+..++|+|++. .+.+..++|....++..++.+++...+..-+.|..++ ++...+.+.+++.+|+...........+.
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~ 85 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLS 85 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHH
Confidence 356788999884 4678889998767788888888888888888887653 45567778889999998887777776655
Q ss_pred HHHHHHHHHHHhhcccccc--cccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhhHHHHHHHH
Q 012823 128 NLGMLVVYMIIIGDVLSGA--WLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAI 205 (456)
Q Consensus 128 ~~g~~~~y~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 205 (456)
............+..++.. .++ . . ..+.... ++..+.. +..-.......+...........+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~------~-~----~~~~~~~--~~~~i~~-~~~~~l~~~gv~~~~~~~~~~~~i~~ 151 (478)
T PF00324_consen 86 YIAAIAAEATAAGSFLQFWGYFPG------L-P----STWVWGI--LIAIIFI-LLITLLNLFGVRVSGKIEFILTIIKL 151 (478)
T ss_pred HHHHHHhhhhhhhhhhcccccccc------c-c----ccccccc--hhhhhhh-hhhhhhhhhhhhccchHHHHHHHHhh
Confidence 5555555555555444322 111 0 0 0000000 1111111 11111222233333222222111111
Q ss_pred HHHHHHHHHH-HHHhhcCCCCCC----------CCCCcc---cccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc-
Q 012823 206 VFVVITAGVA-IVKTIDGSISMP----------CLLPEI---SKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT- 270 (456)
Q Consensus 206 ~~~~~~~~~~-~~~~~~~~~~~~----------~~~p~~---~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~- 270 (456)
..++..+... +.....++.... +..|+. .+..++.+++.++....++|.+........+|.|||+
T Consensus 152 ~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k 231 (478)
T PF00324_consen 152 IALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK 231 (478)
T ss_pred hHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchh
Confidence 1111111111 111111111111 001110 0112477899999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 012823 271 QIKSIVRTSITLCSTVYITTSFFGLLLFGDR 301 (456)
Q Consensus 271 ~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~ 301 (456)
+.||+...+...+.++|.......-...+.+
T Consensus 232 ~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 232 TIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 6899999999999999998887766666544
No 57
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.47 E-value=0.0011 Score=67.94 Aligned_cols=148 Identities=16% Similarity=0.059 Sum_probs=90.4
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHH--HHHHH-HHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGIM-ALPATVKELGLIPGLIMI--VLVGW-LTESSIDMIMRFSRASKSATYSGVVAD 110 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~GiL-~lP~~f~~~G~~~gii~l--i~~~~-l~~~t~~~l~~~~~~~~~~~y~~l~~~ 110 (456)
....|+.+++.....+..+.+|++.+ +.|-...+.|+....... ...+. +...-...+.+..++.+..|.+|.-++
T Consensus 36 ~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~ 115 (471)
T TIGR02119 36 FLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKA 115 (471)
T ss_pred eEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 36678899999999999998887665 677655566752111100 01111 111123344455677889999999999
Q ss_pred Hcchh-HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccc
Q 012823 111 AFGGA-GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRR 189 (456)
Q Consensus 111 ~~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 189 (456)
-||++ .+++..+...+.+++.....+...+..++.+.. . ... ...++..+++.-......
T Consensus 116 Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-------i----------~~~--~~iii~~~iv~iYt~~GG 176 (471)
T TIGR02119 116 RYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-------L----------SYL--TALFIFSSSVLIYTTFGG 176 (471)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C----------CHH--HHHHHHHHHHHHHHHhhh
Confidence 99965 567777777777777777767766766643321 0 111 122223334555566667
Q ss_pred cchhhhhhHHHH
Q 012823 190 VDSLRYTSALSV 201 (456)
Q Consensus 190 l~~l~~~s~~~~ 201 (456)
++...+...+-.
T Consensus 177 ~~av~~td~iQ~ 188 (471)
T TIGR02119 177 FRAVALTDAIQG 188 (471)
T ss_pred HHHHHHHHHHHH
Confidence 777777766655
No 58
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.44 E-value=0.0022 Score=65.82 Aligned_cols=148 Identities=15% Similarity=0.032 Sum_probs=87.6
Q ss_pred ccCCCCccHHHHHHHHHHHHHhh-hhchHHHHHHhhChHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGA-GIMALPATVKELGLIP---GLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVAD 110 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~-GiL~lP~~f~~~G~~~---gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~ 110 (456)
....|+.+++...+.+..+.+|+ ..++.|....+.|+.. +........+...+-...+.+..++.+..|.+|+.++
T Consensus 37 ~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~ 116 (483)
T PRK09442 37 FLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRA 116 (483)
T ss_pred eeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 35678888888888888877766 4557785555556421 1111111111222334445555678889999999999
Q ss_pred Hcchh-HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccc
Q 012823 111 AFGGA-GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRR 189 (456)
Q Consensus 111 ~~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 189 (456)
-||++ .+.+..+...+..++.....+...+..++.+.. +... ...++..+++.-...+..
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-----------------i~~~--~~iii~~~iv~iYt~~GG 177 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-----------------ISYE--TGLLIFGITVALYTAFGG 177 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------------CCHH--HHHHHHHHHHHHHHHhcc
Confidence 99965 456666666666666666667777766644321 0111 122223334455666677
Q ss_pred cchhhhhhHHHH
Q 012823 190 VDSLRYTSALSV 201 (456)
Q Consensus 190 l~~l~~~s~~~~ 201 (456)
++...+...+-.
T Consensus 178 l~av~~TD~iQ~ 189 (483)
T PRK09442 178 FRAVVLTDALQG 189 (483)
T ss_pred HHHHHHHHHHHH
Confidence 777766666554
No 59
>PRK12488 acetate permease; Provisional
Probab=98.44 E-value=0.0026 Score=66.20 Aligned_cols=147 Identities=13% Similarity=0.089 Sum_probs=91.3
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHc
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGI-MALPATVKELGLIPGLIMIVLVGWLTE-SSIDMIMRFSRASKSATYSGVVADAF 112 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~~f~~~G~~~gii~li~~~~l~~-~t~~~l~~~~~~~~~~~y~~l~~~~~ 112 (456)
.-..|+.+++...+.+..+.++++. ++.|-...+.|+- +....+ ...+.. ....++.+-.++.+..|.+|.-++-|
T Consensus 63 ~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf 140 (549)
T PRK12488 63 YTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRL 140 (549)
T ss_pred eeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHc
Confidence 3567899999999999998887775 5788666667753 221111 111111 11234455556677899999999888
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 012823 113 G-GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (456)
Q Consensus 113 G-~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 191 (456)
| |+.|.+..+...+.........+...+..++.++. . +.. ...++..+++.-......++
T Consensus 141 ~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-------i----------~~~--~~iii~~~i~~~Yt~~GGm~ 201 (549)
T PRK12488 141 AQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-------I----------SYL--YAVVIVGALMVLYVTFGGML 201 (549)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C----------CHH--HHHHHHHHHHHHHHhccchh
Confidence 8 56888888777777776677777777766644321 1 111 12223333555556666777
Q ss_pred hhhhhhHHHHH
Q 012823 192 SLRYTSALSVG 202 (456)
Q Consensus 192 ~l~~~s~~~~~ 202 (456)
...+...+-.+
T Consensus 202 av~~td~iQ~~ 212 (549)
T PRK12488 202 ATTWVQIIKAV 212 (549)
T ss_pred HHHHHHHHHHH
Confidence 77777666553
No 60
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.33 E-value=0.00095 Score=66.91 Aligned_cols=145 Identities=16% Similarity=0.134 Sum_probs=80.4
Q ss_pred CCCCccHHHHHHHHHHHHHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchh
Q 012823 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA 115 (456)
Q Consensus 37 ~~~~~s~~~~~~~li~~~iG~G-iL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~ 115 (456)
..|+.+++...+.+..+.+|++ +++.|-...+.|+. +....+............+.+-.++.+..|.+|.-++-||++
T Consensus 4 agr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 4 AGRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSK 82 (406)
T ss_dssp --S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCc
Confidence 3577888888888888888775 55778776677763 333333333333344455566666888999999999999999
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 116 G--RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 116 ~--~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
. +.+..+...+.........+...+..++.+.. +.... ..++..+++.-......++..
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-----------------i~~~~--~~~i~~~i~~iYt~~GGl~av 143 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-----------------IPYNT--AILIVGVIVIIYTFFGGLRAV 143 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------------HHH--HHHHHHHHHHHTTCTT-----
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccc-----------------hhhhH--HHHHHHHHHHHhhhhhhHhhh
Confidence 9 66666666666666677777777776643321 11111 222233344446666666666
Q ss_pred hhhhHHHH
Q 012823 194 RYTSALSV 201 (456)
Q Consensus 194 ~~~s~~~~ 201 (456)
.+...+-.
T Consensus 144 ~~td~iQ~ 151 (406)
T PF00474_consen 144 AWTDFIQG 151 (406)
T ss_dssp -SHHHHHH
T ss_pred hHHHHHHH
Confidence 66655554
No 61
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.31 E-value=0.0045 Score=64.46 Aligned_cols=145 Identities=12% Similarity=0.081 Sum_probs=86.0
Q ss_pred cCCCCccHHHHHHHHHHHHHhh-hhchHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHcc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGA-GIMALPATVKELGLIPGLIMIVLVGWLTE-SSIDMIMRFSRASKSATYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~-GiL~lP~~f~~~G~~~gii~li~~~~l~~-~t~~~l~~~~~~~~~~~y~~l~~~~~G 113 (456)
-..|+.+++...+.+..+.+++ ..++.|-...+.|+- +....+- ..+.. ....++.+-.++.+..|.+|..++-||
T Consensus 64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~ 141 (549)
T TIGR02711 64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRNLGRYTFADVASYRLK 141 (549)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcC
Confidence 5567888888888888776664 567888666666753 2222211 11111 223445555566778999999998887
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccch
Q 012823 114 -GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (456)
Q Consensus 114 -~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (456)
|..|.+..+...+.+.......+...+..++.++. . . .....++..+++.-......++.
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-------i----------~--~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-------L----------N--YHVAVVLVGILMVMYVLFGGMLA 202 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C----------C--HHHHHHHHHHHHHHHHHhhhhHH
Confidence 55677776666666666666666666666644321 1 0 11122233345555566666777
Q ss_pred hhhhhHHHH
Q 012823 193 LRYTSALSV 201 (456)
Q Consensus 193 l~~~s~~~~ 201 (456)
..+...+-.
T Consensus 203 v~~td~iQ~ 211 (549)
T TIGR02711 203 TTWVQIIKA 211 (549)
T ss_pred HHHHHHHHH
Confidence 666666554
No 62
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.26 E-value=0.0031 Score=62.53 Aligned_cols=265 Identities=10% Similarity=0.064 Sum_probs=147.7
Q ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhh--c
Q 012823 106 GVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFL--P 183 (456)
Q Consensus 106 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p 183 (456)
.++++-||++|.++..+.+.+.+.|-...-.++.++..... + .....+..++..+++. -
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~------------------~~~~~~~ili~g~l~~l~~ 145 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T------------------GLPVWAGILIIGVLMTLVT 145 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C------------------CCcHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999998888888888752110 0 0111112222222222 2
Q ss_pred cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCcccccchhhhHHHHhhhhhhhhh-hhhchhH
Q 012823 184 LISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDG-SISMPCLLPEISKQASFWKLFTTFPVLVTAYI-CHHNIHP 261 (456)
Q Consensus 184 l~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~-~h~~~~~ 261 (456)
+.-.|.++.+.+.+..-..+...+. .+...+. ...+....+ ...++.++..+++...-.+. .-+....
T Consensus 146 ifG~r~l~~l~~~a~~~~~~lf~~l-------~~~~~~~~~~~~~~~~~---~~~~~~~fl~a~slv~g~~~sw~~~~aD 215 (442)
T COG1457 146 IFGYRALHKLERIAVPLLLLLFLYL-------LALLFRSKGGLDALWVK---GPTSPLSFLSALSLVIGSFASWGPYAAD 215 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcccccceeecc---CCCcchhHHHHHHHHHHHHHhhhhhhhh
Confidence 3334556666666555543222222 1222221 111111111 12334444444444433333 4456777
Q ss_pred HHhhcCCCc--chhHHHHHHHHHHHHHHHHHHhhhhhhcCCCc-chhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhh
Q 012823 262 IENELKDPT--QIKSIVRTSITLCSTVYITTSFFGLLLFGDRT-LDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVF 338 (456)
Q Consensus 262 i~~~m~~p~--~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~-~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~ 338 (456)
+.+.+|+|+ |.-.....+..+....-..+|.....+-|+.. ..+....+. + +...+.+...+....+-
T Consensus 216 ysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G--------~-~g~~~~lil~l~~~ttN 286 (442)
T COG1457 216 YSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG--------G-FGLPAILILVLGTVTTN 286 (442)
T ss_pred hhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc--------c-HHHHHHHHHHHHHHhcC
Confidence 888899888 55556666777777788888888888888765 333333321 1 44455566677777777
Q ss_pred hhhhhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHh----hcCChHHHHHhhchhhhhhHHHhhhhhHHhh
Q 012823 339 PIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGAN----FVPSIWDAFQFTGATAAVSVGFIFPAAIALR 414 (456)
Q Consensus 339 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~----~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~ 414 (456)
-...++..-.+.+...+ . +..++.....+. ...++|. +..+++.++.++|+.........+--++..|
T Consensus 287 ~~nlYsa~ls~~~i~~~--l----~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~r 358 (442)
T COG1457 287 ANNLYSAGLSFANIIPK--L----SKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIADYFIVR 358 (442)
T ss_pred cHHHHHHHHHHHHhhhh--h----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777666532 1 111122222111 2333333 4678888999988887766666666666655
Q ss_pred hc
Q 012823 415 DT 416 (456)
Q Consensus 415 ~~ 416 (456)
++
T Consensus 359 r~ 360 (442)
T COG1457 359 RR 360 (442)
T ss_pred cc
Confidence 33
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.24 E-value=0.0032 Score=63.17 Aligned_cols=145 Identities=12% Similarity=0.001 Sum_probs=91.8
Q ss_pred CCCccHHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcch-h
Q 012823 38 IDGASFSGAVFNLSTTIVGAGI-MALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG-A 115 (456)
Q Consensus 38 ~~~~s~~~~~~~li~~~iG~Gi-L~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~-~ 115 (456)
.|+.+++...+.+..+.+|++. ++.|....+.|+. +....+..........++..+..++.+..|.+|..++-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchH
Confidence 4677888888888887777654 4778666566753 33222223333344555666666677899999999999998 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 012823 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (456)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 195 (456)
.+.+..+...+..+......+...+..++.+.. . ... ...++..+++.-......++...+
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-------i----------~~~--~~~ii~~~i~~~Yt~~GG~~av~~ 141 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITG-------L----------DLY--LSLLLLGAITILYTVFGGLKAVVW 141 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------c----------hHH--HHHHHHHHHHHHHHHHcchHHHHH
Confidence 777777777777777778888888877754331 0 111 122223334444556667777766
Q ss_pred hhHHHHH
Q 012823 196 TSALSVG 202 (456)
Q Consensus 196 ~s~~~~~ 202 (456)
...+-.+
T Consensus 142 Td~iQ~~ 148 (407)
T TIGR00813 142 TDTIQAV 148 (407)
T ss_pred HHHHHHH
Confidence 6666553
No 64
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.24 E-value=0.0037 Score=62.62 Aligned_cols=63 Identities=11% Similarity=-0.018 Sum_probs=49.9
Q ss_pred hhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 012823 238 SFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGD 300 (456)
Q Consensus 238 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~ 300 (456)
+.+.+.-++-.-.+++.+-.....+.+|.||++ +.||.+..+..+..++=..+-+.-..+-++
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445566667777888999999999999999998 688999988888877776666666666664
No 65
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.23 E-value=0.0064 Score=62.33 Aligned_cols=110 Identities=18% Similarity=0.087 Sum_probs=84.9
Q ss_pred cCCCCccHHHHHHHHHHHHHh-hhhchHHHHHHhhChHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 012823 36 AGIDGASFSGAVFNLSTTIVG-AGIMALPATVKELGLIPGLIMIV---LVGWLTESSIDMIMRFSRASKSATYSGVVADA 111 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG-~GiL~lP~~f~~~G~~~gii~li---~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~ 111 (456)
-..|+.+.+-.......+..+ .-++++|-..-+.|+....+... ...+...+-...+.+..++++..|.+|.-++-
T Consensus 35 ~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~R 114 (493)
T COG0591 35 LGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEAR 114 (493)
T ss_pred ccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHH
Confidence 556777777777788777777 88889997777777543333333 34444444566666666677899999999999
Q ss_pred cc-hhHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012823 112 FG-GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSG 145 (456)
Q Consensus 112 ~G-~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~ 145 (456)
|| +..|.+..++..+...+-+...+...+..++.
T Consensus 115 f~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~ 149 (493)
T COG0591 115 FGSKILRILSALIIIVFFIPYIALQLVAGGLLLSL 149 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99 99999999999999999999999999987743
No 66
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.07 E-value=0.016 Score=57.59 Aligned_cols=300 Identities=14% Similarity=0.073 Sum_probs=154.1
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 012823 69 LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (456)
Q Consensus 69 ~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (456)
.++.-+++..++-.++...-.-+......+. .-++.-+++..||++|..+..+...+...|=-..-....++.+..+..
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~-Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~ 104 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGADT-GLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGG 104 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444333333333333333 447788999999999999999998888888777777777887765543
Q ss_pred cCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 012823 149 NGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPC 228 (456)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (456)
.. .+.. .......+ ..++..+... ...+.++++..+...+.....+........ +.+.+...
T Consensus 105 ~~----------~~~~---~~~~~~~i-~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~ 166 (386)
T TIGR02358 105 RL----------FGEE---SPMLWILI-VGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVVVFS---KADLSELW 166 (386)
T ss_pred Hh----------cCCC---chHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhhhc
Confidence 11 0100 01111211 2222333222 234555555555543222222111111111 11111111
Q ss_pred CCCcccccchhhhHHHHhhhhhhh-hhhhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhh
Q 012823 229 LLPEISKQASFWKLFTTFPVLVTA-YICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVL 307 (456)
Q Consensus 229 ~~p~~~~~~~~~~~~~~~~~~~fa-f~~h~~~~~i~~~m~~p~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il 307 (456)
..|. ..+ +..++....-. -..-...+...|..|+|+|.-+....+..+...+...+|.....+.++.....+.
T Consensus 167 ~~~~---~~s---~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~ 240 (386)
T TIGR02358 167 NRAG---DMS---FAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISIL 240 (386)
T ss_pred CCCC---Ccc---HHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1111 122 22233222211 1233457889999998888888888888888888888888887777654222222
Q ss_pred hCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHh--hc
Q 012823 308 ANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGAN--FV 385 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~--~~ 385 (456)
... .. ....-+...+....+-....++....+.+++ ++- +.+++.. +..+.+.+++. ..
T Consensus 241 ~~~---------g~-~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~-~~~-----~~~~~~~---i~~ii~~~l~~~~~~ 301 (386)
T TIGR02358 241 AGA---------GL-GIPALLIILLSTVTTTFMDIYSAAISTGNLL-PRL-----KVKHLAI---GVGVLGTLIALLFPV 301 (386)
T ss_pred Hhc---------cH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-Hhh-----cchHHHH---HHHHHHHHHHHHHHH
Confidence 211 11 1123344555556666777788877777776 221 1112221 12222223222 24
Q ss_pred CChHHHHHhhchhhhhhHHHhhhhhHH
Q 012823 386 PSIWDAFQFTGATAAVSVGFIFPAAIA 412 (456)
Q Consensus 386 ~~~~~i~~l~Ga~~~~~~~filP~~~y 412 (456)
+.+.+++++.|.......+..+-=++.
T Consensus 302 ~~f~~FL~~lg~~~~P~~gI~i~Dy~l 328 (386)
T TIGR02358 302 DKYENFLLLIGSVFAPLYAVVFVDFFV 328 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 567778888887777666555544433
No 67
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.94 E-value=0.025 Score=55.60 Aligned_cols=316 Identities=15% Similarity=0.146 Sum_probs=147.2
Q ss_pred HHHHHHHhhhhchHHHHH-HhhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHHHHHHHHHH
Q 012823 49 NLSTTIVGAGIMALPATV-KELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIV 125 (456)
Q Consensus 49 ~li~~~iG~GiL~lP~~f-~~~G--~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~ 125 (456)
.+..-.+|+|.|-.|-.. .++| |..+.+..++.++..-..... +..+. ..+|.++.++. ||+...+....+.
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~-gG~~~~l~~~~-g~~f~~lf~~~~~ 77 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALV-GGGYDSLSARI-GKVFGILFTVILY 77 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeec-CCCHHHHHHHh-ChHHHHHHHHHHH
Confidence 456668999999998554 4565 777888888777776655444 22222 25888886555 4555555544444
Q ss_pred HHHH-------HHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhhH
Q 012823 126 VNNL-------GMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSA 198 (456)
Q Consensus 126 ~~~~-------g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 198 (456)
+..- -..++|-..+... +++ ...........++...+..-+++ +.-|....
T Consensus 78 l~iGP~~aiPRtaa~s~e~~i~p~----~~~--------------~~~~~~l~i~siiff~i~~~l~~----~~~k~~~~ 135 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMGIAPL----LHS--------------PTSLLALFIFSLIFFAVVLLLSL----NPSKLIDR 135 (378)
T ss_pred HHHHhchhhhHHHHHHHHHHHHhc----cCc--------------ccchHHHHHHHHHHHHHHHHHHc----CcccHHHH
Confidence 3221 1234444333222 211 00001111111111112222222 22233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCcccc-c---chhhh---HHHHhhhhhhhhhhhhchhHHHh-hcCC
Q 012823 199 LSVGLAIVFVVITAGVAIVKTIDG--SISMPCLLPEISK-Q---ASFWK---LFTTFPVLVTAYICHHNIHPIEN-ELKD 268 (456)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~-~---~~~~~---~~~~~~~~~faf~~h~~~~~i~~-~m~~ 268 (456)
++.+.+-..++....+.+....+. +...+ ..+ ..+ . ..+.+ -+.+++.+.| +...+-.+.+ |+||
T Consensus 136 iGk~LTP~lLi~l~~lii~g~~~p~g~~~~~-~~~-~~~~~~f~~g~l~GY~TmD~laal~f---g~iiv~~i~~~g~~~ 210 (378)
T TIGR00796 136 VGKFLTPALLVTLLALIIKALLWPAGPILAA-SGA-YASQQAFSKGFLEGYLTMDALAALVF---GIIVVNAIRSRGVTK 210 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCcCCc-ccc-cccccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCC
Confidence 333332222222222222223222 11111 011 111 1 11111 2233333333 4445566666 8999
Q ss_pred Ccc-hhHHHHH---HHHHHHHHHHHHHhhhhhhcC---CC-cchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhh
Q 012823 269 PTQ-IKSIVRT---SITLCSTVYITTSFFGLLLFG---DR-TLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPI 340 (456)
Q Consensus 269 p~~-~~~~~~~---s~~i~~~~Y~~~g~~gy~~fG---~~-~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~ 340 (456)
|+| .++.... +......+|...+..|...-+ +. ..+.++.+..+.. +++.-..+..+.+.+.++++---
T Consensus 211 ~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~---~G~~G~~ll~i~v~lACLtT~iG 287 (378)
T TIGR00796 211 PKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHL---FGSLGSFLLGLIITLACLTTAVG 287 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHH---cchhHHHHHHHHHHHHHHHHHHH
Confidence 984 4444443 444556666666666654422 11 1233333333221 12333445556677777777777
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhh
Q 012823 341 VFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALR 414 (456)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~ 414 (456)
....+.+.+.++.. + . + .+ .......+.++.++.. .++.++++ ....+.+++|..+-+.
T Consensus 288 li~~~a~~f~~~~~-k-~----~-y~--~~v~~~~l~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~li 346 (378)
T TIGR00796 288 LTTACSEYFHKLVP-K-L----S-YK--TWVIVFTLFSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLI 346 (378)
T ss_pred HHHHHHHHHHHhcC-C-C----C-HH--HHHHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 77777777776642 1 1 1 11 1122334455555543 67777775 4455667777765543
No 68
>PRK09395 actP acetate permease; Provisional
Probab=97.92 E-value=0.042 Score=57.34 Aligned_cols=147 Identities=14% Similarity=0.076 Sum_probs=85.9
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcc
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGI-MALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG 113 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G 113 (456)
.-..|+.+++...+.+..+.+|++. ++.|-...+.|+- +....+-..+.......++.+-.++.+..|++|..++-||
T Consensus 65 ~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~-~~~~~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Ryg 143 (551)
T PRK09395 65 YTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYD-GLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLK 143 (551)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcC
Confidence 3667888888888888888777654 5888666667763 2221111111111223344555566778999999999998
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccch
Q 012823 114 -GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (456)
Q Consensus 114 -~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (456)
|+.|.+..+...+.........+...+..++.+.. . .. ....++..+++.-......++.
T Consensus 144 s~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-------i----------~~--~~~ili~~~i~~iYt~~GGm~a 204 (551)
T PRK09395 144 QGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-------L----------NY--HVAVVLVGVLMMVYVLFGGMLA 204 (551)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C----------CH--HHHHHHHHHHHHHHHhhcchHH
Confidence 55788777766665555555555666655543321 1 11 1122223334455555566666
Q ss_pred hhhhhHHHH
Q 012823 193 LRYTSALSV 201 (456)
Q Consensus 193 l~~~s~~~~ 201 (456)
..+...+-.
T Consensus 205 v~~TD~iQ~ 213 (551)
T PRK09395 205 TTWVQIIKA 213 (551)
T ss_pred HHHHHHHHH
Confidence 666665554
No 69
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.88 E-value=0.035 Score=55.42 Aligned_cols=356 Identities=15% Similarity=0.128 Sum_probs=157.7
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G--~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G 113 (456)
+++|+=++++-+..=.+...-.+.-.+-.+.-+.| +.-.++.+++-.++......+-.+...+ -.-+|+.+++..||
T Consensus 36 ~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~-~gIpFpv~~RaSFG 114 (497)
T COG1953 36 AEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSK-YGIPFPVLSRASFG 114 (497)
T ss_pred cccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccc-cCCCchHHHHHHHh
Confidence 45566666655444333333333222222222222 4444444444444433333333333333 34589999999999
Q ss_pred hhHHH---HHHHHHHHHHHHHHHHHHHHhhcccccc----cccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccc
Q 012823 114 GAGRA---LLQVCIVVNNLGMLVVYMIIIGDVLSGA----WLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS 186 (456)
Q Consensus 114 ~~~~~---~~~~~~~~~~~g~~~~y~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 186 (456)
-+|.. +.+.++...-+|...- ..+..+..+ .+. .+..+...+..+ .+.......++ .=++--++.
T Consensus 115 i~Ga~~p~l~R~i~A~~WyGvqty---~Gg~av~llL~~i~~~-~~~~~~~~~~lg---~tt~~~i~F~i-fW~l~~l~~ 186 (497)
T COG1953 115 IYGANFPALIRAIVAIVWYGVQTY---AGGLAVNLLLGSIFPS-LLIPNTLSPLLG---LTTLELICFFI-FWVLQLLVL 186 (497)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhccc-cccCCccccccC---CcHHHHHHHHH-HHHHHHHHH
Confidence 88763 4555555554543221 111111111 111 000110011111 11111112111 112222344
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCC-cc-cccchhhhHHHHhhhhhhhhh-hhhchhHH
Q 012823 187 FRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSI-SMPCLLP-EI-SKQASFWKLFTTFPVLVTAYI-CHHNIHPI 262 (456)
Q Consensus 187 ~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p-~~-~~~~~~~~~~~~~~~~~faf~-~h~~~~~i 262 (456)
.+.++++|++..++-.+..+.+...+ ++-..+.+- ....+.| .. +....+..+...+...+-.|. ...|.|..
T Consensus 187 ~~g~~~Ir~~~~~a~p~~~~~~~gl~---Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DF 263 (497)
T COG1953 187 FKGMESIRKFETWAGPLVYIAMLGLA---IWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDF 263 (497)
T ss_pred hcCHHHHHHHHHHhchHHHHHHHHHH---HHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 56778888777766543333333222 222222211 1111222 11 112233344444434333333 34588999
Q ss_pred HhhcCCCcchhHHHHHHHHHHHHHHHHHHh----hhhhhcCCCcc--hhhhhCCCCCCCCCcccHHHHHHHHHHHHHHH-
Q 012823 263 ENELKDPTQIKSIVRTSITLCSTVYITTSF----FGLLLFGDRTL--DDVLANFDGDLGIPYSSLLDDVVRVSYGIHLM- 335 (456)
Q Consensus 263 ~~~m~~p~~~~~~~~~s~~i~~~~Y~~~g~----~gy~~fG~~~~--~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~- 335 (456)
.+.-|+|+.-.+.-.++..+.+.+.-.+|+ ..+..||+... .++..++++.. .....+-+.+++..+
T Consensus 264 sRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~------~~~fl~~l~~~iati~ 337 (497)
T COG1953 264 TRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGF------YAAFLAGLTFAVATIS 337 (497)
T ss_pred hcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccch------HHHHHHHHHHHHHHHh
Confidence 999998874444344555555555555544 45667998744 46777776641 111122222222222
Q ss_pred HhhhhhhhHHHHHHHHhcCCCCCCCCCCCcchh--hHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHh
Q 012823 336 LVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFF--AVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIAL 413 (456)
Q Consensus 336 ~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl 413 (456)
+..--...+....+.+++ |+.. +.+|-. ...+.+.+.+.-+=-....+...++..|++.+.+.+.++--++-.
T Consensus 338 ~Ni~aN~vsp~~D~s~l~-Pk~i----n~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaDyfli 412 (497)
T COG1953 338 TNIAANIVSPGYDLSALF-PKYI----NIKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIADYFLV 412 (497)
T ss_pred hhHHhccCChHHHHHHhc-cccc----chhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222333334444444444 3322 222211 111122222222222233567777777788888888777776666
Q ss_pred h
Q 012823 414 R 414 (456)
Q Consensus 414 ~ 414 (456)
+
T Consensus 413 r 413 (497)
T COG1953 413 R 413 (497)
T ss_pred h
Confidence 5
No 70
>PRK11017 codB cytosine permease; Provisional
Probab=97.79 E-value=0.051 Score=54.33 Aligned_cols=203 Identities=10% Similarity=0.098 Sum_probs=100.3
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012823 68 ELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (456)
Q Consensus 68 ~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (456)
..++.-+++..++-..+...-..+......+. .-++..+++..||++|..+..+...+...|=...-....++.+....
T Consensus 38 GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~-G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~ 116 (404)
T PRK11017 38 GLSFVDFLLAVLIGNLLLGIYTAALGYIGAKT-GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT 116 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34566566555555444443333333333333 45788899999999999988888877776644444444444443221
Q ss_pred ccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccc--ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 012823 148 LNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS--FRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSIS 225 (456)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (456)
+ . .... ... +..++..+... .|.++++..+...... ...+........+. +...
T Consensus 117 ~-------~----------~~~~-~~~-i~~~l~~~~~~~G~~~i~~~~~~~~p~~~---~~~~~~~~~~~~~~--~g~~ 172 (404)
T PRK11017 117 G-------L----------DINL-LIV-LSGLLMTVTAYFGISALTILSRIAVPAIA---LLGGYSVWLAVNDV--GGLD 172 (404)
T ss_pred C-------C----------CHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcc--Cchh
Confidence 1 0 1111 111 12223333332 3444444444333221 11111111111111 1111
Q ss_pred C-CCCCCcccccchhhhHHHHhhhhhhhhh-hhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 012823 226 M-PCLLPEISKQASFWKLFTTFPVLVTAYI-CHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGD 300 (456)
Q Consensus 226 ~-~~~~p~~~~~~~~~~~~~~~~~~~faf~-~h~~~~~i~~~m~~p~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~ 300 (456)
. ....|. +...+..++...+-.+. .-.+.+...|..|++++.......+..+...+...+|.......|+
T Consensus 173 ~~~~~~~~-----~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 173 GLKAIVPA-----EPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred hhhcCCCC-----CcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 111111 11234444444433333 3568889999999887655556666666666666677666666665
No 71
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.67 E-value=0.082 Score=53.29 Aligned_cols=51 Identities=8% Similarity=0.004 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012823 89 IDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIG 140 (456)
Q Consensus 89 ~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~ 140 (456)
.++-.|.... ..++..|++++.+||+..++..+...+...+....-....+
T Consensus 82 Q~~~~Rlgiv-TG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a 132 (439)
T PRK00701 82 QSLSAKLGIA-TGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAA 132 (439)
T ss_pred HHHHhHhhhh-cCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443333 35579999999999998887766666665555555554444
No 72
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.67 E-value=0.1 Score=54.46 Aligned_cols=147 Identities=10% Similarity=0.048 Sum_probs=88.2
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcc
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG 113 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~G-iL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G 113 (456)
+...|+.+++...+.+..+.++++ +++.|-...+.|+-.-... .-..........++.+-.++.+..|.+|.-++-||
T Consensus 28 ~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~ 106 (552)
T TIGR03648 28 YVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL-MGWTGGYVLLALLLAPYLRKFGKYTVPDFIGDRYY 106 (552)
T ss_pred eeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHhC
Confidence 467899999999999998888664 5588866666675321111 11111112234556666677888999999999998
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccch
Q 012823 114 GA-GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (456)
Q Consensus 114 ~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (456)
++ .+++..+...+.........+...+..++.+.. . +. ....++..+++.-......++.
T Consensus 107 s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-------i----------~~--~~~iii~~~i~~iYt~~GG~~a 167 (552)
T TIGR03648 107 SNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-------V----------DF--ETGVFIGMAIVFFYAVLGGMKG 167 (552)
T ss_pred CCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C----------CH--HHHHHHHHHHHHHHHHhhhHHH
Confidence 55 577766666666666566666666655543321 0 11 1122223334555555666777
Q ss_pred hhhhhHHHH
Q 012823 193 LRYTSALSV 201 (456)
Q Consensus 193 l~~~s~~~~ 201 (456)
..+...+-.
T Consensus 168 V~~TD~iQ~ 176 (552)
T TIGR03648 168 VTWTQVAQY 176 (552)
T ss_pred HHHHHHHHH
Confidence 666665554
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.51 E-value=0.16 Score=52.46 Aligned_cols=146 Identities=10% Similarity=0.069 Sum_probs=80.7
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHH-----HHHHhhcCCCCHHHH
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLTE-SSIDMI-----MRFSRASKSATYSGV 107 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~GiL-~lP~~f~~~G~~~gii~li~~~~l~~-~t~~~l-----~~~~~~~~~~~y~~l 107 (456)
+-..|+.+++...+.+..+.+++..+ +.|-..-+.|+-.-.. .+...+.. ....++ ....++.+..|.+|.
T Consensus 36 ~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~--~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~ 113 (502)
T PRK15419 36 ILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWI--AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDY 113 (502)
T ss_pred eeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHH
Confidence 46678899999999888888777765 6886666778642111 11111111 111111 112234577899999
Q ss_pred HHHHcchh---HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcc
Q 012823 108 VADAFGGA---GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPL 184 (456)
Q Consensus 108 ~~~~~G~~---~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 184 (456)
-++-||++ .+.+..++..+.....+..-+...+..++.+. + ++ .....++..+++.-.
T Consensus 114 l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------------g---i~--~~~~iii~~~iv~iY 174 (502)
T PRK15419 114 FTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF--------------G---MS--YETALWAGAAATILY 174 (502)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C---CC--HHHHHHHHHHHHHHH
Confidence 99999864 34444444444444444444455555553322 1 01 112233334456666
Q ss_pred ccccccchhhhhhHHHH
Q 012823 185 ISFRRVDSLRYTSALSV 201 (456)
Q Consensus 185 ~~~~~l~~l~~~s~~~~ 201 (456)
.....++...+...+-.
T Consensus 175 t~~GGl~aV~~TD~iQ~ 191 (502)
T PRK15419 175 TFIGGFLAVSWTDTVQA 191 (502)
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 66677777777766665
No 74
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.49 E-value=0.003 Score=64.04 Aligned_cols=353 Identities=11% Similarity=0.090 Sum_probs=152.3
Q ss_pred CCCccHHHHHHHHHHHHHhhhhchHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchh
Q 012823 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKE--LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA 115 (456)
Q Consensus 38 ~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~--~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~ 115 (456)
+|+.+.++-+..-.+..+....+.+-..... .++.-+++..++..++...-..+......++ .-++..+++..||.+
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~-Gl~~~v~sR~~FG~~ 84 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRT-GLPTMVLSRASFGYR 84 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC----HHHHTTTTS-TT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCCchhcchhccCcc
Confidence 4555666666666666665555555444322 3455566666655555544444444433333 446777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhc--ccccchhHHHHHHHHHHHhhccccccccchh
Q 012823 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG--QHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (456)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (456)
|..+..+...+...|-...-..+.++.+..+......+. ...+ ............+...++..+. -...++.+
T Consensus 85 Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~g~~~l 159 (440)
T PF02133_consen 85 GSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSF----LWIGNAIIGIALPLWVCFFIFWLIQTLF-AIYGMKAL 159 (440)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------HH-----------HHHHHHHHHHHHH-HCTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcc----hhhhhhhhcchhhHHHHHHHHHHHHHHH-HhcCHHHH
Confidence 999999998888888777777788888766554321100 0000 0000011111111111122211 12233444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhh-hhhchhHHHhhcCCCcch
Q 012823 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYI-CHHNIHPIENELKDPTQI 272 (456)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~-~h~~~~~i~~~m~~p~~~ 272 (456)
+.+..+...+..... +....+...+.+.......+......+ .+..++...+-.+. .-.+.+...+.+|++++-
T Consensus 160 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~ 234 (440)
T PF02133_consen 160 RRLAVIAAPILLVVF---IGMLIWALSKAGGGPLLSAPASPSPSG--SFLAAIALVIGSWISWAPNASDYSRYAKSDTSA 234 (440)
T ss_dssp HHHHHCCHHHHHHHH---HHHHHHHHHHCT-HHHCCS--S----S---HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHH
T ss_pred HhHHhhhhHHHHhhh---hheeEEEeecCCcchhhhCcccchhHH--HHHHHHHHHHhhhhhhhhccccHHhhCCCCCCc
Confidence 444433332111111 111122222222110001110000001 23333333333322 345677899999999877
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhh----cCCCcchh--hhhCCCCCCCCCcccHHHHHHHHHHHH-HHHHhhhhhhhHH
Q 012823 273 KSIVRTSITLCSTVYITTSFFGLLL----FGDRTLDD--VLANFDGDLGIPYSSLLDDVVRVSYGI-HLMLVFPIVFFSL 345 (456)
Q Consensus 273 ~~~~~~s~~i~~~~Y~~~g~~gy~~----fG~~~~~~--il~~~~~~~~~~~~~~~~~~~~i~~~i-~~~~s~p~~~~~~ 345 (456)
.+...++..........++..+... .++...+. ++..+.+ .....+..+...+ ......-...++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~l~i~~~~~~~~~~~n~ys~ 307 (440)
T PF02133_consen 235 WWGFWLGFPGGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLP-------PFGGFFPALLILFASIWTNNAANLYSA 307 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--H-------HHHHHHHH-HHHHHHHTTHHHHHTHHH
T ss_pred EEEEeehhhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcc-------hhHHHHHHHHHHHHHHHHhhhhhHhhH
Confidence 7888888877777777777766553 33322221 2222211 1011111112222 2222334455666
Q ss_pred HHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCC----hHHHHHhhchhhhhhHHHhhhhhHHhh
Q 012823 346 RLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPS----IWDAFQFTGATAAVSVGFIFPAAIALR 414 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~----~~~i~~l~Ga~~~~~~~filP~~~yl~ 414 (456)
...+.+... ++. +.+++..... ++...........+ +.+.+++.|.......+..+==++..|
T Consensus 308 ~~~l~~~~~-~~~----~~~~~~~~~~-~i~~~~~~~~~~~~~~~~f~~fL~~lg~~~~P~~gI~i~Dy~i~r 374 (440)
T PF02133_consen 308 GLALQNIFP-KRI----SRRRGVIIVG-VIGIAIAPWGLLGNFSFLFTNFLSLLGYFLGPWAGIMIADYFIVR 374 (440)
T ss_dssp HHHHHCCST-TT------HHHHHHHHH-HHHHCT-GGGTCCCCHC----HCCCCCHTTHHHHHHHHHHHHTTT
T ss_pred HHHHHHccc-eee----cchHHHHHHH-HHHHHHHHHHHHhchhhhHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 666666542 111 2222222221 12222222222333 556888888888877766665555544
No 75
>PRK10484 putative transporter; Provisional
Probab=97.46 E-value=0.19 Score=52.19 Aligned_cols=90 Identities=9% Similarity=-0.047 Sum_probs=56.2
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcc
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG 113 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~GiL-~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G 113 (456)
+-..|+.+++-..+.+..+.++++.+ +.|-..-+.|+.... .....+.........+..-.++.+..|.+|.-++-||
T Consensus 34 flagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg 112 (523)
T PRK10484 34 FLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYD 112 (523)
T ss_pred eecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcC
Confidence 46678899998888888887766654 788555556753211 1111111112233344444456788899999999999
Q ss_pred hhHHHHHHHHHH
Q 012823 114 GAGRALLQVCIV 125 (456)
Q Consensus 114 ~~~~~~~~~~~~ 125 (456)
++.+.+......
T Consensus 113 ~~~~~~~~~~~~ 124 (523)
T PRK10484 113 KTTRRIVSILFL 124 (523)
T ss_pred chhHHHHHHHHH
Confidence 987776555443
No 76
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.45 E-value=0.18 Score=51.81 Aligned_cols=146 Identities=14% Similarity=0.122 Sum_probs=76.8
Q ss_pred cCCCCccHHHHHHHHHHHHHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH----HHh-hcCCCCHHHHHH
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMR----FSR-ASKSATYSGVVA 109 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~G-iL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~----~~~-~~~~~~y~~l~~ 109 (456)
-..|+.+++...+.+..+.+++. +++.|-...+.|+.. ....+-..+........+.+ ..+ +.+..|.+|.-+
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 55788889988888888877755 456886555667642 21111111111222222222 222 567889999999
Q ss_pred HHcchh---HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccc
Q 012823 110 DAFGGA---GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS 186 (456)
Q Consensus 110 ~~~G~~---~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 186 (456)
+-||++ .+.+..+...+........-+...+..++.+. +. .. ....++..++..-...
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~--------------gi---~~--~~~iii~~~i~~~Yt~ 172 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF--------------GL---DY--KTGLLIGALIIVIYTF 172 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------Cc---cH--HHHHHHHHHHHHHHHH
Confidence 999954 33344444433333334444444554543322 10 01 1122223345555556
Q ss_pred ccccchhhhhhHHHH
Q 012823 187 FRRVDSLRYTSALSV 201 (456)
Q Consensus 187 ~~~l~~l~~~s~~~~ 201 (456)
...++...+...+-.
T Consensus 173 ~GGl~av~~TD~iQ~ 187 (487)
T TIGR02121 173 FGGFLAVSWTDFVQG 187 (487)
T ss_pred hhhHHHHHHHHHHHH
Confidence 666777666666554
No 77
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.37 E-value=0.18 Score=50.22 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=56.4
Q ss_pred CCccHHHHHHHHHHHHHhhh-hchHHHHHHhhChHHHHHHHHHHHH---HHHHHHHHHHHHHh-hcCCCCH-----HHHH
Q 012823 39 DGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGW---LTESSIDMIMRFSR-ASKSATY-----SGVV 108 (456)
Q Consensus 39 ~~~s~~~~~~~li~~~iG~G-iL~lP~~f~~~G~~~gii~li~~~~---l~~~t~~~l~~~~~-~~~~~~y-----~~l~ 108 (456)
++.|.+|+.+....+.+|+| ++.+|.+...+| -.++.-+.+.++ .+.|.-..+....+ +.++.+| ..+-
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 56999999999999999998 999999988777 234333333333 33333333333333 4344447 7887
Q ss_pred HHHcchhHHHHHHHH
Q 012823 109 ADAFGGAGRALLQVC 123 (456)
Q Consensus 109 ~~~~G~~~~~~~~~~ 123 (456)
+...|||...+..++
T Consensus 124 ~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF 138 (425)
T ss_pred HHhCccHHHHHHHHH
Confidence 788888877776666
No 78
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.22 Score=49.52 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=53.4
Q ss_pred CCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhhcCC-----CCcchhhHHHHHHHHHHHH
Q 012823 363 DNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHG-----IATKNDRLASWLMISLAVS 437 (456)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~-----~~~~~~~~~~~~i~~~g~~ 437 (456)
.+.|+...+.+..+++.++.+...+...+..+.+.+.+..+-+..+.+++...+|+ +.++|.++..|...++-..
T Consensus 323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i~~ 402 (416)
T COG1914 323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILIVA 402 (416)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHHHH
Confidence 55666666666667766666655599999999999999888887777777765443 2344555555555554444
Q ss_pred HHHHHH
Q 012823 438 SSTVAV 443 (456)
Q Consensus 438 ~~v~~~ 443 (456)
..+.-.
T Consensus 403 L~i~li 408 (416)
T COG1914 403 LNIILL 408 (416)
T ss_pred HHHHHH
Confidence 444333
No 79
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.19 E-value=0.037 Score=53.15 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=86.9
Q ss_pred CccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCHHHHHHHHcchhHHH
Q 012823 40 GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFS-RASKSATYSGVVADAFGGAGRA 118 (456)
Q Consensus 40 ~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~-~~~~~~~y~~l~~~~~G~~~~~ 118 (456)
..+.+..+.+=..++-|+|-..=|..-.+-||+++.+-+++-++..---..+..-.. -|++-+|.+|++++..||+++.
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~ 130 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKK 130 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHH
Confidence 355667788888999999999999877899999998888876666655555544433 4788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 012823 119 LLQVCIVVNNLGMLVVYMIIIGDVLS 144 (456)
Q Consensus 119 ~~~~~~~~~~~g~~~~y~~~~~~~l~ 144 (456)
++.+..++.+.....++....++.+.
T Consensus 131 lf~~f~~~~lilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 131 LFLIFIFFLLILVIAVFADVVANTFV 156 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999888887763
No 80
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.75 E-value=0.7 Score=45.92 Aligned_cols=184 Identities=14% Similarity=0.149 Sum_probs=97.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHcc-hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchh
Q 012823 91 MIMRFSRASKSATYSGVVADAFG-GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTR 169 (456)
Q Consensus 91 ~l~~~~~~~~~~~y~~l~~~~~G-~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (456)
++.+.-++.++++.+|....-++ ++.|++..+...+-.+--.+..+..++..++.++. + +.
T Consensus 93 L~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g-------v-~~---------- 154 (529)
T COG4147 93 LIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG-------V-PY---------- 154 (529)
T ss_pred HHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-------C-Cc----------
Confidence 34445567789999998766555 66777776666666666677777777766654432 1 10
Q ss_pred HHHHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCC--------C------CCCCCcccc
Q 012823 170 FTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSIS--------M------PCLLPEISK 235 (456)
Q Consensus 170 ~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------~~~~p~~~~ 235 (456)
..-+++..+++.-...+..++...|.+++--++.+...++.......+...+..+ + ....|...
T Consensus 155 -~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~- 232 (529)
T COG4147 155 -HVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLL- 232 (529)
T ss_pred -eeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCc-
Confidence 1122233445555556667777777666554222222212111212222111100 0 11112111
Q ss_pred cchhhhHHHHhhhhhhhhhhhhchhHHHhh-cCCCc--chhHHHHHHHHHHHHHHHHHHhhhhhh
Q 012823 236 QASFWKLFTTFPVLVTAYICHHNIHPIENE-LKDPT--QIKSIVRTSITLCSTVYITTSFFGLLL 297 (456)
Q Consensus 236 ~~~~~~~~~~~~~~~faf~~h~~~~~i~~~-m~~p~--~~~~~~~~s~~i~~~~Y~~~g~~gy~~ 297 (456)
..+ ..+.++...--..+..-+|.+.-. -.-|+ .-+|.+.++...+..+|+..-+.|+.+
T Consensus 233 ~~~---~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 233 YKD---PIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred ccC---HHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 233333333333355556654322 22333 567899999999999999988888774
No 81
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.20 E-value=1.5 Score=43.54 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=35.5
Q ss_pred CCcccccchhhhHHHHhhhhhhhhh-hhhchhHHHhhcCCCcchhHHHHHHHHH
Q 012823 230 LPEISKQASFWKLFTTFPVLVTAYI-CHHNIHPIENELKDPTQIKSIVRTSITL 282 (456)
Q Consensus 230 ~p~~~~~~~~~~~~~~~~~~~faf~-~h~~~~~i~~~m~~p~~~~~~~~~s~~i 282 (456)
.|+++...+..-+..++|-..|+.. +-..+.+..+.++|+++..+........
T Consensus 204 ~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa~~v~~~ 257 (439)
T COG0733 204 KPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLL 257 (439)
T ss_pred cCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHHHHHHH
Confidence 3445444445557788888888887 5556777777888888877655444433
No 82
>PRK15015 carbon starvation protein A; Provisional
Probab=96.19 E-value=0.12 Score=53.20 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCCHHHHHHHHcchhHHHHHHHH
Q 012823 45 GAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRF-SRASKSATYSGVVADAFGGAGRALLQVC 123 (456)
Q Consensus 45 ~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~-~~~~~~~~y~~l~~~~~G~~~~~~~~~~ 123 (456)
-.+-|=..++-|+|-+-=|..-.+-||+++.+-+++-.++.---..+..-. ..|++-+|.+|++++..|++++.++.+.
T Consensus 87 VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lfli~ 166 (701)
T PRK15015 87 VLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALVA 166 (701)
T ss_pred chhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHHHHH
Confidence 446677788999999999988889999999988887665554444443332 2377889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 012823 124 IVVNNLGMLVVYMIIIGDVL 143 (456)
Q Consensus 124 ~~~~~~g~~~~y~~~~~~~l 143 (456)
.++.+......+...+.+.+
T Consensus 167 i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 167 CFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888877666
No 83
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.09 E-value=0.4 Score=49.53 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=37.7
Q ss_pred HHHHhhhhhhhhhhhhchhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHhhhhhh
Q 012823 242 LFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLL 297 (456)
Q Consensus 242 ~~~~~~~~~faf~~h~~~~~i~~~m~~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~ 297 (456)
+...++++.-+=.+...--..-.|+|+|+ ..||-...+...++++|....++--.+
T Consensus 296 F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t 352 (945)
T KOG1288|consen 296 FASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCT 352 (945)
T ss_pred hhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccC
Confidence 33444444333223323333567899999 589999999999999999988776544
No 84
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.49 E-value=1.7 Score=44.04 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=82.9
Q ss_pred CccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCCHHHHHHHHcchhHHH
Q 012823 40 GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRF-SRASKSATYSGVVADAFGGAGRA 118 (456)
Q Consensus 40 ~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~-~~~~~~~~y~~l~~~~~G~~~~~ 118 (456)
..+.+..+-+=..++-|+|-+-=|.--.|-||.++.+-+++-+++.---..++.-. ..|++-+|.+|++++..|+..+.
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKV 130 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHH
Confidence 35556667777888999999999999999999999988887666655444444332 23778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 012823 119 LLQVCIVVNNLGMLVVYMIIIGDVL 143 (456)
Q Consensus 119 ~~~~~~~~~~~g~~~~y~~~~~~~l 143 (456)
+..+...+.+......+.....+.+
T Consensus 131 ~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 131 FFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888877777777777666
No 85
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=95.46 E-value=1.9 Score=42.98 Aligned_cols=267 Identities=13% Similarity=0.076 Sum_probs=130.4
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHH
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASK--SATYSGVVAD 110 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G--~~~gii~li~~~~l~~~t~~~l~~~~~~~~--~~~y~~l~~~ 110 (456)
...+|.=|+++-+..=....++.+...+..+-.+.| |+-++++.++.-.+... .++-..+.+. .-+++-..+.
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~---f~~lns~~G~~yhIsFpv~sR~ 126 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAI---FLVLNSRPGSDYHISFPVLSRS 126 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHH---HHHHccCCCcccccceeeeeee
Confidence 466788889988888888889999988887777877 77777776654443332 2222111111 2345555556
Q ss_pred HcchhHH---HHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccc
Q 012823 111 AFGGAGR---ALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISF 187 (456)
Q Consensus 111 ~~G~~~~---~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 187 (456)
-||-++. .+..+++...-+|.. .-+.++.+..+++...++..-.++.+++...+.......++.=++-.|..++
T Consensus 127 sFGiygS~~pIi~R~vma~vwYg~~---awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~ 203 (572)
T KOG2466|consen 127 SFGIYGSLWPIINRVVMACVWYGVN---AWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWF 203 (572)
T ss_pred ehhhhHhHHHHHHHHHHHHhhhhhh---hhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeec
Confidence 6666654 445555544444432 1223333333332211111111333443333344444444444455565554
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCcccccchhhhHHHHhhhhhhhhh-hhhchhHHHh
Q 012823 188 RRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDG--SISMPCLLPEISKQASFWKLFTTFPVLVTAYI-CHHNIHPIEN 264 (456)
Q Consensus 188 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~-~h~~~~~i~~ 264 (456)
...++|++-...-+.+.+.+. .+++-...-.+| +..+... ..+...-.+.++.++...+-.|. ...|.|...+
T Consensus 204 -~p~~ir~lf~~ka~~t~fA~~-g~LIw~l~kAhG~G~l~~~~s--t~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsR 279 (572)
T KOG2466|consen 204 -PPYKIRHLFTWKAVLTPFAAF-GFLIWLLKKAHGLGHLFDSKS--TVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSR 279 (572)
T ss_pred -cHHHhhhHHHHHHhhhHHHHH-HHHHHHHHhcCCccccccCCC--cccccchhHHHHHHHHHHHhccchhhccCchhHh
Confidence 445566665555432222222 221111221222 2222111 11111222334444443333333 4558888888
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHh----hhhhhcCCCcch--hhhhCCC
Q 012823 265 ELKDPTQIKSIVRTSITLCSTVYITTSF----FGLLLFGDRTLD--DVLANFD 311 (456)
Q Consensus 265 ~m~~p~~~~~~~~~s~~i~~~~Y~~~g~----~gy~~fG~~~~~--~il~~~~ 311 (456)
--|+|.+....-..+..+.+.+.-.+|+ .++..||+.--+ +++.++-
T Consensus 280 F~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 280 FAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred hcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 8888875554444444455555555544 466679986332 3444443
No 86
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=95.00 E-value=5.7 Score=41.90 Aligned_cols=108 Identities=11% Similarity=0.185 Sum_probs=75.2
Q ss_pred CCCCccHHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCHHHHHHHHc
Q 012823 37 GIDGASFSGAVFNLSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA---SKSATYSGVVADAF 112 (456)
Q Consensus 37 ~~~~~s~~~~~~~li~~~iG~GiL-~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~---~~~~~y~~l~~~~~ 112 (456)
..+-.+......--+..+.|.=.+ -|-|....+|..-+.++.+++++++..|+.-+...... ....+|.-+ .+.+
T Consensus 111 a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmI-SRsL 189 (1075)
T KOG2082|consen 111 AARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMI-SRSL 189 (1075)
T ss_pred ccccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEE-eccc
Confidence 344555555566667777776544 67899999999999999999999999888777666653 344567655 4556
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012823 113 GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSG 145 (456)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~ 145 (456)
|+-..-.+.++.++-.--+..+|++..-+.+-.
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~ 222 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLT 222 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHHHH
Confidence 666666666776666666677777776665433
No 87
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=94.90 E-value=0.053 Score=54.88 Aligned_cols=229 Identities=15% Similarity=0.161 Sum_probs=121.6
Q ss_pred CCCccHHHHHH-----HHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHHHHHH
Q 012823 38 IDGASFSGAVF-----NLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS---KSATYSGVVA 109 (456)
Q Consensus 38 ~~~~s~~~~~~-----~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~---~~~~y~~l~~ 109 (456)
+-+-++++.++ |+++-|+ .|-++|-..|+|...+++++.+...++..|..=.....++. .-..|.-+ .
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yfli-s 102 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLI-S 102 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEE-E
Confidence 33455555554 4444443 56889999999999999888877666665544333333322 22233322 3
Q ss_pred HHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccc
Q 012823 110 DAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRR 189 (456)
Q Consensus 110 ~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 189 (456)
+.+|+...-.+.++..+.+.-.+..|.+..++.+.+++... + .. ..+- +..+..++++.++. -.
T Consensus 103 ~slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~-s----------~~--~i~g--i~~vt~~ill~i~~-ag 166 (643)
T KOG2083|consen 103 RSLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETE-S----------KE--MIDG--IGSVTVLILLAINV-AG 166 (643)
T ss_pred ecccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhc-c----------HH--Hhcc--hhHHHHHHHHHhhh-cc
Confidence 34455555555555566666678888888888887666421 0 00 0011 11122222222222 23
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHH-hhc------CCCC------CCCCCCcccccchhhhHHHHhhhhhhhhhhh
Q 012823 190 VDSLRYTSALSVGLAIVFVVITAGVAIVK-TID------GSIS------MPCLLPEISKQASFWKLFTTFPVLVTAYICH 256 (456)
Q Consensus 190 l~~l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~------~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h 256 (456)
+++-+.++++-++ .+.+.+.-.+.. ++. +... ..+.+|++++. ..+|..++++.=+..+.
T Consensus 167 ~~w~~k~q~~ll~----il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~---~tfF~vf~vfFpaatgi 239 (643)
T KOG2083|consen 167 VEWEAKLQIVLLL----ILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG---YTFFSVFAVFFPAATGI 239 (643)
T ss_pred chhHHHHHHHHHH----HHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC---CceEeeeeeecchhhhh
Confidence 3444444433321 111111111111 111 1111 11223433322 23555567766666666
Q ss_pred hchhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHhh
Q 012823 257 HNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFF 293 (456)
Q Consensus 257 ~~~~~i~~~m~~p~-~~~~~~~~s~~i~~~~Y~~~g~~ 293 (456)
..-..+..++|+|+ ..|+....+....+.+|+.+...
T Consensus 240 laG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~ 277 (643)
T KOG2083|consen 240 LAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIAD 277 (643)
T ss_pred hccccccCCCCCchhhcccchhhhhhhhhhhhhhhhhh
Confidence 66677889999998 68899999999999999665444
No 88
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=94.81 E-value=4.5 Score=39.73 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012823 82 GWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLS 144 (456)
Q Consensus 82 ~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~ 144 (456)
.++.+...++..|....+ .++..|..++.+||+..+...+...+........-....+.-++
T Consensus 23 ~~~~~~~q~~~~R~~~~T-g~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ 84 (358)
T PF01566_consen 23 NLLKYVFQEMAARLGIVT-GKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALN 84 (358)
T ss_pred HHHHHHHHHHHHHHhhhc-CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445544443 55778888889999999888888887777776766666665553
No 89
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=92.56 E-value=1.4 Score=43.36 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=63.9
Q ss_pred HHHHHHHhhhhch----HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHcchhHHHHHHHH
Q 012823 49 NLSTTIVGAGIMA----LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR-ASKSATYSGVVADAFGGAGRALLQVC 123 (456)
Q Consensus 49 ~li~~~iG~GiL~----lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~-~~~~~~y~~l~~~~~G~~~~~~~~~~ 123 (456)
.+++++-+-|+-. .|++. .+|.+.++.+..+..-+.+....-..+..+ +++..-..+++++.||+.|..+..+.
T Consensus 198 iiv~~i~~~g~~~~~~~~~~~i-~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~ 276 (378)
T TIGR00796 198 IVVNAIRSRGVTKPKKITKYTI-KAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLI 276 (378)
T ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHH
Confidence 3344444445422 23333 356555555555555554444322222211 13556677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccc
Q 012823 124 IVVNNLGMLVVYMIIIGDVLSGAW 147 (456)
Q Consensus 124 ~~~~~~g~~~~y~~~~~~~l~~~~ 147 (456)
..+.|+.++++.....+|.++++.
T Consensus 277 v~lACLtT~iGli~~~a~~f~~~~ 300 (378)
T TIGR00796 277 ITLACLTTAVGLTTACSEYFHKLV 300 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999886544
No 90
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=92.14 E-value=17 Score=37.84 Aligned_cols=70 Identities=23% Similarity=0.241 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHHHHHhhh-hchHHHHHH-hhCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 012823 41 ASFSGAVFNLSTTIVGAG-IMALPATVK-ELGL---IPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVAD 110 (456)
Q Consensus 41 ~s~~~~~~~li~~~iG~G-iL~lP~~f~-~~G~---~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~ 110 (456)
.+..+-+...++..+|.| +.-.|+-.. ++|. ++=.+.+++.+.=..+.-..+.|..++...+-|.+++..
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~ 79 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCPI 79 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345666788899999998 779997755 5552 223333444444444444555555555555555555543
No 91
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=91.71 E-value=16 Score=36.69 Aligned_cols=324 Identities=15% Similarity=0.150 Sum_probs=156.9
Q ss_pred ccHHHHHHHHHHHHHhhhhchHHHHHH-hhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHH
Q 012823 41 ASFSGAVFNLSTTIVGAGIMALPATVK-ELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGR 117 (456)
Q Consensus 41 ~s~~~~~~~li~~~iG~GiL~lP~~f~-~~G--~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~ 117 (456)
......-+.+..-..|+|=|-.|-... ++| |+.+.+..++.++.--.-..+-. .+. ..++.+++++.--+.+.
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~---~~~-~~~~~~l~~~v~~~f~~ 78 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAV---AKS-GGGIEDLASRVGPKFAL 78 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH---hhc-CCCHHHHhcccCcHHHH
Confidence 334556678888899999999986655 355 88888888887776554332221 122 23888887777654444
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccc
Q 012823 118 ALLQVCIVVNNLG--------MLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRR 189 (456)
Q Consensus 118 ~~~~~~~~~~~~g--------~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 189 (456)
.+..+... +.| ..++|-+.....+ +... .-......++...+.+-+++.++
T Consensus 79 if~~~i~l--~IGP~~aiPRtaa~sfe~~i~p~~------------------~~~~-~~~~~ifs~iFF~i~~~l~~~p~ 137 (427)
T PF05525_consen 79 IFTILIYL--SIGPLFAIPRTAAVSFEMGIAPFF------------------PENS-NISLLIFSIIFFAITYLLSLNPS 137 (427)
T ss_pred HHHHHHHH--HHHhcccCcchhhhhHHHhhhccC------------------Cccc-ccchhhhhHHHHHHHHHHHhchh
Confidence 44322221 111 1222222222222 1100 01111222222224444444332
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCC----CCCcccccchhhhHHHHhhhhhhhhhhhhchhHHH
Q 012823 190 VDSLRYTSALSVGLAIVFVVITAGVAIVKTIDG--SISMPC----LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIE 263 (456)
Q Consensus 190 l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~ 263 (456)
|.+..++-+.+-..++....+.+....+. +..++. ..|-.+......+-+.+++.+.|+-. .+-.+.
T Consensus 138 ----kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~i---Ii~~i~ 210 (427)
T PF05525_consen 138 ----KIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGII---IINAIR 210 (427)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHH
Confidence 33444443333322222222222223222 111111 01101111122233444554444433 222332
Q ss_pred h-hcCCCcchh----HHHHHHHHHHHHHHHHHHhhhhhhcCC---Ccc-hhhhhCCCCCCCCCcccHHHHHHHHHHHHHH
Q 012823 264 N-ELKDPTQIK----SIVRTSITLCSTVYITTSFFGLLLFGD---RTL-DDVLANFDGDLGIPYSSLLDDVVRVSYGIHL 334 (456)
Q Consensus 264 ~-~m~~p~~~~----~~~~~s~~i~~~~Y~~~g~~gy~~fG~---~~~-~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~ 334 (456)
+ ..+++++.. ++-.++...-.++|...+..|...-+. ..+ +.++....++. +++.-..+..+.+.+.+
T Consensus 211 ~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~---~G~~G~~ll~iiv~lAC 287 (427)
T PF05525_consen 211 QKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHL---FGSAGQILLGIIVFLAC 287 (427)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHH---cChhHHHHHHHHHHHHH
Confidence 2 234444333 444566667778888888888775443 333 34444444331 12334455566677777
Q ss_pred HHhhhhhhhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhh
Q 012823 335 MLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALR 414 (456)
Q Consensus 335 ~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~ 414 (456)
+++---....+.+.+++... +. +-++++ .+..+.++++|.. .++.++++. ...+.+++|..+-+.
T Consensus 288 LTTaIGL~~a~a~yf~~~~~--ki----sY~~~v---~i~~i~S~~ian~--Gl~~Ii~~s----~PiL~~iYP~~IvLI 352 (427)
T PF05525_consen 288 LTTAIGLISACAEYFSELFP--KI----SYKVWV---IIFTIFSFIIANL--GLDQIIKIS----VPILMFIYPVAIVLI 352 (427)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cc----ChHHHH---HHHHHHHHHHHHh--CHHHHHHHH----HHHHHHHhHHHHHHH
Confidence 77777777888888888763 21 111121 2333444444432 456666653 456778899887665
No 92
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=86.64 E-value=38 Score=34.12 Aligned_cols=329 Identities=12% Similarity=0.061 Sum_probs=153.1
Q ss_pred cHHHHHHHHHHHHHhhhhchHHHHHH-hhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHHH
Q 012823 42 SFSGAVFNLSTTIVGAGIMALPATVK-ELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRA 118 (456)
Q Consensus 42 s~~~~~~~li~~~iG~GiL~lP~~f~-~~G--~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~ 118 (456)
.....-+.+..-..|+|=|-.|-... ++| |+.+.+..++.++.--.-..+-+ .+.+ .++.|++++.-.+.+..
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiav---a~~~-g~~~~l~~rv~~~f~~~ 84 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVAL---AKVG-GGVDSLSTPIGKVAGVL 84 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH---hhcC-CCHHHHhhhcchHHHHH
Confidence 46667888899999999999986655 456 88888877776665443222211 1222 48888877765444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhhH
Q 012823 119 LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSA 198 (456)
Q Consensus 119 ~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 198 (456)
+. .+.. .+.|-+. .++.... .....++ .+..++. ........++...+.+-+++.++ |.+..
T Consensus 85 f~-~~i~-l~IGP~~--------aiPRtaa-vsfEm~i-~p~~~~~--~~~~~ifs~iFF~i~~~l~l~p~----klvd~ 146 (439)
T PRK15433 85 LA-TVCY-LAVGPLF--------ATPRTAT-VSFEVGI-APLTGDS--ALPLFIYSLVYFAIVILVSLYPG----KLLDT 146 (439)
T ss_pred HH-HHHH-HHHhhcc--------ccCCccc-cchhhee-eccCCcc--cHHHHHHHHHHHHHHHHHHcChh----hHHHH
Confidence 32 2221 1111000 0111000 0000011 1222211 11122222223334444444332 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC--CCCCC-C-C--CCcccccchhhhHHHHhhhhhhhhhhhhchhHHHh-hcCCCcc
Q 012823 199 LSVGLAIVFVVITAGVAIVKTIDG--SISMP-C-L--LPEISKQASFWKLFTTFPVLVTAYICHHNIHPIEN-ELKDPTQ 271 (456)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~-~--~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~-~m~~p~~ 271 (456)
++.+.+-..++....+.+...++. +...+ + . .|-.+......+-+.+++.+.|+-. .+-.+.+ ..+++++
T Consensus 147 iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~i---ii~~i~~~G~~~~~~ 223 (439)
T PRK15433 147 VGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIV---IVNAARSRGVTEARL 223 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHcCCCCHHH
Confidence 444333333222222222222221 11111 0 0 1111112223445566666666654 3333333 3666664
Q ss_pred hh----HHHHHHHHHHHHHHHHHHhhhhhh---cCCC-cchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhh
Q 012823 272 IK----SIVRTSITLCSTVYITTSFFGLLL---FGDR-TLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFF 343 (456)
Q Consensus 272 ~~----~~~~~s~~i~~~~Y~~~g~~gy~~---fG~~-~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~ 343 (456)
.. ++-.++.....++|...+..|... +++. ..+.++.....+. ++++...+..+...+.++++---...
T Consensus 224 ~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~---~G~~G~~ll~iiv~lACLTTaIGLi~ 300 (439)
T PRK15433 224 LTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHT---FGGGGSFLLAALIFIACLVTAVGLTC 300 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 344466667778888888888754 2222 2233333332221 12344455556666667777777777
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhh
Q 012823 344 SLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALR 414 (456)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~ 414 (456)
.+.+.+++.+. . + .-....+..+.++.++. -.+++++++ ....+.+++|..+-+.
T Consensus 301 a~a~~f~~~~~---i----s---Y~~~v~i~~l~S~~lSn--~G~~~II~~----s~PiL~~iYP~~IvLi 355 (439)
T PRK15433 301 ACAEFFAQYVP---L----S---YRTLVFILGGFSMVVSN--LGLSQLIQI----SVPVLTAIYPPCIALV 355 (439)
T ss_pred HHHHHHHhhcC---C----c---HHHHHHHHHHHHHHHHH--hHHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 77777776641 1 1 11111233334444433 234555554 4566778888876665
No 93
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=85.31 E-value=5.9 Score=39.65 Aligned_cols=99 Identities=18% Similarity=0.280 Sum_probs=68.0
Q ss_pred HHHHHHhhhhc---hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCHHHHHHHHcchhHHHHHHHHHH
Q 012823 50 LSTTIVGAGIM---ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFS-RASKSATYSGVVADAFGGAGRALLQVCIV 125 (456)
Q Consensus 50 li~~~iG~GiL---~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~-~~~~~~~y~~l~~~~~G~~~~~~~~~~~~ 125 (456)
++++.-.-|.- ..-....++|.+.++.+.++.+.+.+..+..-.... ..++..-..+++++.+|+.|..+..+.+.
T Consensus 205 Ii~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~ 284 (427)
T PF05525_consen 205 IINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVF 284 (427)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 34555555555 334445567777666666666655554433322211 13344456778899999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccc
Q 012823 126 VNNLGMLVVYMIIIGDVLSGAWL 148 (456)
Q Consensus 126 ~~~~g~~~~y~~~~~~~l~~~~~ 148 (456)
+.|+-++++-...++|..++..+
T Consensus 285 lACLTTaIGL~~a~a~yf~~~~~ 307 (427)
T PF05525_consen 285 LACLTTAIGLISACAEYFSELFP 307 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999976553
No 94
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=81.10 E-value=63 Score=32.34 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=38.7
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHH
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLTESS 88 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL-~lP~~f~~~G~~~gii~li~~~~l~~~t 88 (456)
+++++.|.+|+...-+...+|+|=. ....|..-+|- .++.-+.+.+++..-+
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmat 66 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMAT 66 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHH
Confidence 4456899999999999999999965 77888887774 3555555555555444
No 95
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=77.65 E-value=74 Score=31.16 Aligned_cols=110 Identities=14% Similarity=0.107 Sum_probs=72.3
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHH-H----HHHHHHhhcCCCCHHHHHH
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGI-MALPATVKELGLIPGLIMIVLVGWLTESSI-D----MIMRFSRASKSATYSGVVA 109 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~~f~~~G~~~gii~li~~~~l~~~t~-~----~l~~~~~~~~~~~y~~l~~ 109 (456)
-..|+.+.+--.+....+=+++.- .+=|-+--+.| +|++++...-+-..+-. . -+.+..++.+.-+..|+-+
T Consensus 36 lgnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~G--lgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~ 113 (473)
T COG4145 36 LGNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYG--LGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLF 113 (473)
T ss_pred hccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhc--hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHH
Confidence 344556655555566555555543 35576655666 34455554444444332 2 2334445677888888877
Q ss_pred HH-cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012823 110 DA-FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (456)
Q Consensus 110 ~~-~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (456)
+- =++...|+..+...+...+...+..+..++.+|...
T Consensus 114 ~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~ 152 (473)
T COG4145 114 ARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL 152 (473)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 66 467788999999999999999999999998886544
No 96
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=75.22 E-value=24 Score=35.53 Aligned_cols=97 Identities=21% Similarity=0.217 Sum_probs=62.0
Q ss_pred HHHHHHhhhhch---HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHcchhHHHHHHHHHH
Q 012823 50 LSTTIVGAGIMA---LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR-ASKSATYSGVVADAFGGAGRALLQVCIV 125 (456)
Q Consensus 50 li~~~iG~GiL~---lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~-~~~~~~y~~l~~~~~G~~~~~~~~~~~~ 125 (456)
+++++-.-|+-. .-....++|.+.++.+.++.+.+.+..+..-....+ .++..=....+++.+|++++.+..+.+.
T Consensus 209 ii~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~ 288 (439)
T PRK15433 209 IVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIF 288 (439)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 344444445422 223344567776666666666665554422111001 1223334456788899999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccc
Q 012823 126 VNNLGMLVVYMIIIGDVLSGA 146 (456)
Q Consensus 126 ~~~~g~~~~y~~~~~~~l~~~ 146 (456)
+.|+-++++-...+++.+++.
T Consensus 289 lACLTTaIGLi~a~a~~f~~~ 309 (439)
T PRK15433 289 IACLVTAVGLTCACAEFFAQY 309 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999888543
No 97
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=72.82 E-value=66 Score=31.95 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=66.3
Q ss_pred HHHHHHhhhhchHH---HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCHHHHHHHHcchhHHHHHHHHHH
Q 012823 50 LSTTIVGAGIMALP---ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFS-RASKSATYSGVVADAFGGAGRALLQVCIV 125 (456)
Q Consensus 50 li~~~iG~GiL~lP---~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~-~~~~~~~y~~l~~~~~G~~~~~~~~~~~~ 125 (456)
++|+.=.-|+-.=. ..-..+|++.++.+..+...+.+....--.... ..++.+=..+..++.||+.|+++...++.
T Consensus 207 Iv~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~ 286 (431)
T COG1114 207 IVNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVF 286 (431)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 34444455555443 333356777777666666555554411100000 12344556778899999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccc
Q 012823 126 VNNLGMLVVYMIIIGDVLSGAWL 148 (456)
Q Consensus 126 ~~~~g~~~~y~~~~~~~l~~~~~ 148 (456)
+.|.-++++-...++|...+..|
T Consensus 287 lACLTTaiGLi~a~aefF~~~~p 309 (431)
T COG1114 287 LACLTTAVGLIVACAEFFSKLVP 309 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999977665
No 98
>TIGR00909 2A0306 amino acid transporter.
Probab=72.27 E-value=1.1e+02 Score=30.60 Aligned_cols=48 Identities=21% Similarity=0.072 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 012823 101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (456)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (456)
.....++.++..|+++..+..+...+..+++..+.....++.+.....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 263 TAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred CcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345667788888999999999999999999999999888888765543
No 99
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=70.67 E-value=1.4e+02 Score=31.24 Aligned_cols=45 Identities=13% Similarity=0.058 Sum_probs=27.9
Q ss_pred CCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012823 102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGA 146 (456)
Q Consensus 102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~ 146 (456)
..+.+..+...+++++.++.+......+++..+.+...+..+...
T Consensus 299 ~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~am 343 (557)
T TIGR00906 299 APFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAM 343 (557)
T ss_pred cHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444667777777777777777777776666665443
No 100
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=69.29 E-value=1.3e+02 Score=30.03 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhhchHHHHHHhhChHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHHHHHHHHH
Q 012823 48 FNLSTTIVGAGIMALPATVKELGLIPGLIMIVL---VGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCI 124 (456)
Q Consensus 48 ~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~---~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~ 124 (456)
+....+-+|.|-++ +..++|--.|.-++.. ..++.+.-.++-.|... -..++..|++++.++|+.++...+..
T Consensus 11 ~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~-vTg~~l~~~~r~~~~~~~~~~~~~~~ 86 (390)
T TIGR01197 11 FLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGV-VTGLDLAEVCREHYPKVPRITLWILA 86 (390)
T ss_pred HHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhee-ecCCCHHHHHHHHCCCchHHHHHHHH
Confidence 33444456666665 2344443333333322 22222222333333322 23568899999999988776555444
Q ss_pred HHHHHHHHHH
Q 012823 125 VVNNLGMLVV 134 (456)
Q Consensus 125 ~~~~~g~~~~ 134 (456)
.+...+....
T Consensus 87 ~l~ii~~~~~ 96 (390)
T TIGR01197 87 ELAIIATDMA 96 (390)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 101
>PLN02680 carbon-monoxide oxygenase
Probab=67.38 E-value=1e+02 Score=28.15 Aligned_cols=96 Identities=9% Similarity=0.174 Sum_probs=56.9
Q ss_pred hhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCCCCCCCCC
Q 012823 238 SFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIP 317 (456)
Q Consensus 238 ~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~ 317 (456)
++-+++...|.+. ..++..+. ++..+.+++.+|.+-+..-...++...+|+..-..+-++ .++ .|+. +
T Consensus 48 n~HPlLM~~Gfi~--l~geAIL~--yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~-~nfy-----S 115 (232)
T PLN02680 48 NVHPVLMVIGLVL--LNGEAMLA--YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGI-DNFY-----S 115 (232)
T ss_pred echHHHHHHHHHH--HHHHHHhc--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCc-cccc-----c
Confidence 4445555555443 12222222 455555667777777777777777777777554444332 223 2222 2
Q ss_pred cccHHHHHHHHHHHHHHHHhhhhhhhHH
Q 012823 318 YSSLLDDVVRVSYGIHLMLVFPIVFFSL 345 (456)
Q Consensus 318 ~~~~~~~~~~i~~~i~~~~s~p~~~~~~ 345 (456)
.++|+-...-+++.++.+..+....+|.
T Consensus 116 lHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 116 LHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3578888888888888888877777664
No 102
>PHA02764 hypothetical protein; Provisional
Probab=66.61 E-value=1.2e+02 Score=29.00 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=49.5
Q ss_pred cCCCCccHHHHHH-HHHHHHHhhhhchHHHHHHhh--ChHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCCHHHHH
Q 012823 36 AGIDGASFSGAVF-NLSTTIVGAGIMALPATVKEL--GLIPGLIMIVLVGWLTESSIDMIMRFSR----ASKSATYSGVV 108 (456)
Q Consensus 36 ~~~~~~s~~~~~~-~li~~~iG~GiL~lP~~f~~~--G~~~gii~li~~~~l~~~t~~~l~~~~~----~~~~~~y~~l~ 108 (456)
.--|+.+.+.+++ |+.+...|.++ +.|+-+... |.- .+...++.++++...+....+... .++.+.| .
T Consensus 9 GLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVY---I 83 (399)
T PHA02764 9 GIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAY---I 83 (399)
T ss_pred CceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEE---h
Confidence 3347788888887 66666666654 555533322 322 333334444444444444444443 3344455 4
Q ss_pred HHHcchhHHHHHHHHHHHHH
Q 012823 109 ADAFGGAGRALLQVCIVVNN 128 (456)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~~ 128 (456)
++++|++...++.+......
T Consensus 84 SRAFGP~~GFLvG~a~WLtl 103 (399)
T PHA02764 84 RTAFSSKFYTIFGISLWLTY 103 (399)
T ss_pred HHhhCccHHHHHHHHHHHHH
Confidence 88999988888777665443
No 103
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=64.76 E-value=1.6e+02 Score=29.64 Aligned_cols=327 Identities=15% Similarity=0.184 Sum_probs=153.1
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHH---HHHHHHHHHHHhh-cCCCCHHH----
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLT---ESSIDMIMRFSRA-SKSATYSG---- 106 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL-~lP~~f~~~G~~~gii~li~~~~l~---~~t~~~l~~~~~~-~~~~~y~~---- 106 (456)
+.+++.|.+|+...-..+.+|+|=. ....|..-+|- .++.-+.+.+++. -|.--.|....++ .++.+|..
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 5568899999999999999999965 77888887773 3455555554444 4444444444442 22333321
Q ss_pred HHHHHcc-hhHHHHHHHHHHHHHHH--HHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhc
Q 012823 107 VVADAFG-GAGRALLQVCIVVNNLG--MLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLP 183 (456)
Q Consensus 107 l~~~~~G-~~~~~~~~~~~~~~~~g--~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 183 (456)
-.++-+| ||...++.+... ..+| ........+++.++. .++. ......+ .+.++.-
T Consensus 137 Yi~kGl~~r~l~v~FA~~li-~afg~i~n~vQ~NsIa~a~~~--------------af~~-----~~~~~gi-~la~l~~ 195 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALI-AAFGFIGNGVQSNSIASALAN--------------AFGI-----PPLVTGI-VLALLVA 195 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHH-HHHHhhcchhhHHHHHHHHHH--------------hcCC-----cHHHHHH-HHHHHHH
Confidence 1233343 555555553333 3333 455555555555532 1111 1112222 2223333
Q ss_pred cccccccchhhhhhHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-cccccchhh-------------hHHHHhhh
Q 012823 184 LISFRRVDSLRYTSALSV-GLAIVFVVITAGVAIVKTIDGSISMPCLLP-EISKQASFW-------------KLFTTFPV 248 (456)
Q Consensus 184 l~~~~~l~~l~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~-------------~~~~~~~~ 248 (456)
+.....+++...++..-+ ++++++++..+.+.+.+.-+ .| .... -+++..++. .+.+++.=
T Consensus 196 ~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~--iP--~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~R 271 (452)
T COG1115 196 LVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQ--IP--AVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKR 271 (452)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh--hH--HHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHH
Confidence 444456666544443332 34666666555444333211 11 0000 000000111 11122222
Q ss_pred hhhhhh-hhhchhHHHhhc--CCCcchhH-----HHHHHHHHHHHHHHHHHhhhhhhcCCCcch-hhh-hCCCCCCCCCc
Q 012823 249 LVTAYI-CHHNIHPIENEL--KDPTQIKS-----IVRTSITLCSTVYITTSFFGLLLFGDRTLD-DVL-ANFDGDLGIPY 318 (456)
Q Consensus 249 ~~faf~-~h~~~~~i~~~m--~~p~~~~~-----~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~-~il-~~~~~~~~~~~ 318 (456)
-+||=. +....|-.+.+- +||.|--- +..=++.+|++.-+.+-..|-+..++..++ .++ ..+....
T Consensus 272 GlfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~---- 347 (452)
T COG1115 272 GLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHL---- 347 (452)
T ss_pred HhhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhc----
Confidence 233333 344555555443 46653222 222255566666666666666655542111 111 1222211
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhh-cCChHHHHHhhch
Q 012823 319 SSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANF-VPSIWDAFQFTGA 397 (456)
Q Consensus 319 ~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~-~~~~~~i~~l~Ga 397 (456)
+++....+.+.+.+-.++++--.++-..++++=+. +++ .-....|+..+......+.. .+-...+.+..-+
T Consensus 348 g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~-~~k-------~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~~~g 419 (452)
T COG1115 348 GSWGSYFVAIALFLFAFTTILGWYYYGEKNIEFLF-GSK-------KAILLYRLIVLAMVFLGAVLSLDLVWNLADLFMG 419 (452)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCc-------hHHHHHHHHHHHHHHHhccccHHHHHHHHHHhch
Confidence 12344445555555556666666666666666443 222 11235566555555555543 4555555555544
Q ss_pred hhh
Q 012823 398 TAA 400 (456)
Q Consensus 398 ~~~ 400 (456)
+-.
T Consensus 420 lMa 422 (452)
T COG1115 420 LMA 422 (452)
T ss_pred HHH
Confidence 433
No 104
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=63.47 E-value=2e+02 Score=30.17 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=54.7
Q ss_pred ccHHHHHHHHHHHHHhhhhc-hHHHH-HHhhCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchh
Q 012823 41 ASFSGAVFNLSTTIVGAGIM-ALPAT-VKELGL---IPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA 115 (456)
Q Consensus 41 ~s~~~~~~~li~~~iG~GiL-~lP~~-f~~~G~---~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~ 115 (456)
.+-.+.....++..++.|=. -.||- +.++|+ ++=.+++++.|+=..|--.-+.+-++++...-+..+|-..-| .
T Consensus 82 ~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P~l~G-i 160 (629)
T KOG3659|consen 82 GSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRRIAPALKG-I 160 (629)
T ss_pred hhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHHhCHHhcC-C
Confidence 45556677777777777644 66865 666664 556677777777666666666666666666666666555544 4
Q ss_pred HHHHHHHHHHHHHH
Q 012823 116 GRALLQVCIVVNNL 129 (456)
Q Consensus 116 ~~~~~~~~~~~~~~ 129 (456)
|.-++.++.+..++
T Consensus 161 gy~i~~i~~~~~~y 174 (629)
T KOG3659|consen 161 GYAICLIAFFVGLY 174 (629)
T ss_pred chhhhHHHHHHHHH
Confidence 44444444444444
No 105
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=62.37 E-value=1.2e+02 Score=31.29 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=37.9
Q ss_pred hcCCCCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012823 98 ASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGA 146 (456)
Q Consensus 98 ~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~ 146 (456)
.+......++-....||++......+..+..+..+++-+...+..+-.+
T Consensus 321 s~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~af 369 (550)
T KOG1289|consen 321 SSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAF 369 (550)
T ss_pred CCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 3445677788888999999988888888888888888877777766443
No 106
>PRK10263 DNA translocase FtsK; Provisional
Probab=49.53 E-value=3.2e+02 Score=31.81 Aligned_cols=27 Identities=4% Similarity=-0.000 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhh
Q 012823 271 QIKSIVRTSITLCSTVYITTSFFGLLL 297 (456)
Q Consensus 271 ~~~~~~~~s~~i~~~~Y~~~g~~gy~~ 297 (456)
+..+-+....++++.+|+.++++.|-.
T Consensus 20 rrL~E~~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 20 RRLLEALLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 334445556678888899999988865
No 107
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=46.91 E-value=56 Score=28.81 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=48.1
Q ss_pred hHHHHHhhchhhhhhHHHhhhhhHHhhhcCCC----------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012823 388 IWDAFQFTGATAAVSVGFIFPAAIALRDTHGI----------ATKNDRLASWLMISLAVSSSTVAVSSDIYSIFN 452 (456)
Q Consensus 388 ~~~i~~l~Ga~~~~~~~filP~~~yl~~~~~~----------~~~~~~~~~~~i~~~g~~~~v~~~~~~i~~i~~ 452 (456)
+..-+-+.|++.+.-+..++|+...+..+++. .+|..-....++..+|++...++...|...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566778888888998999999999866541 345555677777788888888877777666654
No 108
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=45.41 E-value=40 Score=30.53 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcCChHHHHHhh---------chhhhhhHHHhhhhhHHhhhcCC--C-Ccch--hhHHHHHHHHHHHH
Q 012823 372 AALMGFIFVGANFVPSIWDAFQFT---------GATAAVSVGFIFPAAIALRDTHG--I-ATKN--DRLASWLMISLAVS 437 (456)
Q Consensus 372 ~~~~~~~~~ia~~~~~~~~i~~l~---------Ga~~~~~~~filP~~~yl~~~~~--~-~~~~--~~~~~~~i~~~g~~ 437 (456)
-..+..++++|..++.++-++.+. ||.++.-+.+|= |...-+. . ...- .+++.|+++++|.+
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~l 235 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLL 235 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHH
Confidence 355566667777777766666553 777777766654 2222111 1 1112 47899999999999
Q ss_pred HHHHHHHHH
Q 012823 438 SSTVAVSSD 446 (456)
Q Consensus 438 ~~v~~~~~~ 446 (456)
.++-+++.-
T Consensus 236 l~lr~~i~Y 244 (262)
T KOG4812|consen 236 LFLRGFINY 244 (262)
T ss_pred HHHHHHHhH
Confidence 999888743
No 109
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=44.45 E-value=3.3e+02 Score=27.02 Aligned_cols=46 Identities=7% Similarity=0.146 Sum_probs=39.2
Q ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 012823 104 YSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLN 149 (456)
Q Consensus 104 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~ 149 (456)
...+.++..|+++.+++.+...+.++++..+++...++.+.....+
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d 305 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARD 305 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhcccccccc
Confidence 5577778888999999999999999999999999998887766543
No 110
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=43.35 E-value=3.3e+02 Score=27.29 Aligned_cols=141 Identities=15% Similarity=0.065 Sum_probs=75.4
Q ss_pred chhHH-HHHHHHHHHHHH-HHHHhhhhhhcCCCcchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 012823 271 QIKSI-VRTSITLCSTVY-ITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLN 348 (456)
Q Consensus 271 ~~~~~-~~~s~~i~~~~Y-~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~ 348 (456)
+-.+- ...+..+..... ......++..|+.- .++.-.+.-++. +. +.-....+.........++|...++....
T Consensus 221 ~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~-~~~~~~~il~~~--~~-~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai 296 (415)
T COG0814 221 KNSKKAVRKAILIGSLIALVLYILVGFFVFGCF-GSLVFGNILAAK--EQ-NISLLSALAGVINSPILSIALNIFALFAI 296 (415)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHcc--Cc-hHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 34443 444444444333 34555666666642 233333333332 11 22222333444445558888888888865
Q ss_pred HHHhc---CCCC------CCCCCCCcchhhHHHHHHHHHHHHHhhcC-ChHHHHHhhchhhhhhHHHhhhhhHHhhh
Q 012823 349 LDGLL---FPYA------IPIAFDNRRFFAVTAALMGFIFVGANFVP-SIWDAFQFTGATAAVSVGFIFPAAIALRD 415 (456)
Q Consensus 349 ~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~ia~~~~-~~~~i~~l~Ga~~~~~~~filP~~~yl~~ 415 (456)
.-..+ .+.+ .+...+...|..........+.+.++..| .+....+..|++...+.+-++|.+++++-
T Consensus 297 ~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p 373 (415)
T COG0814 297 ATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKP 373 (415)
T ss_pred HHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44322 1111 11111111122223344566666666655 46778888999999999999999999994
No 111
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=42.16 E-value=3e+02 Score=28.28 Aligned_cols=236 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccccccccchh-----hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHH--
Q 012823 171 TLLLLTTLFVFLPLISFRRVDSL-----RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLF-- 243 (456)
Q Consensus 171 ~~~~~~~~~~~~pl~~~~~l~~l-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-- 243 (456)
....+....++.|-...+-++.. ++...+-.......++.++.+.+-+..+-+...++..|+++.. +|..+.
T Consensus 8 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~fgw~y~~~~~~~~~~~~~la~S~yG~irLGg~d~kPefS~~-sW~aMlf~ 86 (485)
T PF02028_consen 8 IILAFVILAIIFPEQASSVLNAIFNFITTNFGWFYLLLVLLFLVFCLWLAFSPYGNIRLGGDDAKPEFSTF-SWFAMLFC 86 (485)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCSBSSSTSS--SS-HH-HHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccccCceecCCCCCCCCCCch-HHHHHHHH
Q ss_pred --HHhhhhhhhhh---hhhchhHHHhhcCCCcchhHHHHHHHH----HHHHHHHHHHhh-hhhhcCCCcchhhhhCCCCC
Q 012823 244 --TTFPVLVTAYI---CHHNIHPIENELKDPTQIKSIVRTSIT----LCSTVYITTSFF-GLLLFGDRTLDDVLANFDGD 313 (456)
Q Consensus 244 --~~~~~~~faf~---~h~~~~~i~~~m~~p~~~~~~~~~s~~----i~~~~Y~~~g~~-gy~~fG~~~~~~il~~~~~~ 313 (456)
-+.|.+.++-. .|..-||...|-..++..+.++..++. ..-.+|...|+. +|..|..+..-.+-..+.+-
T Consensus 87 aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y~k~~~~~~ss~l~pl 166 (485)
T PF02028_consen 87 AGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFFYNKGKPLRISSALYPL 166 (485)
T ss_dssp HCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHTS---SSGGGGCHHH
T ss_pred HHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheeeeecCCCCchhhhhhhh
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCC-hHHHH
Q 012823 314 LGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPS-IWDAF 392 (456)
Q Consensus 314 ~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~-~~~i~ 392 (456)
.+...+.++..+..++..+..+...-.-.--....+..-+..-..-.+....+..+..+...+........+++ +..+-
T Consensus 167 ~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS 246 (485)
T PF02028_consen 167 LGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIVITVIFTISAVSGLDKGIKRLS 246 (485)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred cCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HhhchhhhhhHHHhh
Q 012823 393 QFTGATAAVSVGFIF 407 (456)
Q Consensus 393 ~l~Ga~~~~~~~fil 407 (456)
++.--++...+.+++
T Consensus 247 ~~n~~l~~~ll~~vl 261 (485)
T PF02028_consen 247 NINVYLAFALLLFVL 261 (485)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 112
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=42.13 E-value=3.9e+02 Score=27.20 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=34.7
Q ss_pred CCHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012823 102 ATYSGVVADAFGG-AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (456)
Q Consensus 102 ~~y~~l~~~~~G~-~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (456)
..+.++.+..+|. .+..++.+...+..+++..+++...++.+....
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 335 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFS 335 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577787888887 677777788888888888888887777765544
No 113
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=41.30 E-value=33 Score=22.27 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCCcc
Q 012823 274 SIVRTSITLCSTVYITTSFFGLLLFGDRTL 303 (456)
Q Consensus 274 ~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~ 303 (456)
.+..++..+.+++..+.|..-|.+||...+
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 455667777777778888888889997543
No 114
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=40.62 E-value=4.1e+02 Score=26.99 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=38.8
Q ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 012823 104 YSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (456)
Q Consensus 104 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (456)
..+..+..+|+++..++.+...+..+++..++....++.+.....
T Consensus 266 ~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ar 310 (468)
T TIGR03810 266 MAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAK 310 (468)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888999999999999999999999999999999888765543
No 115
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=39.35 E-value=3.7e+02 Score=26.13 Aligned_cols=37 Identities=11% Similarity=-0.030 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhh
Q 012823 271 QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVL 307 (456)
Q Consensus 271 ~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il 307 (456)
.-++++.++...+.-.-+.+...||........+++.
T Consensus 45 ~T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~ 81 (340)
T PF12794_consen 45 HTPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFS 81 (340)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchH
Confidence 4578999999999999999999999877554444443
No 116
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=37.64 E-value=32 Score=22.08 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCcc
Q 012823 275 IVRTSITLCSTVYITTSFFGLLLFGDRTL 303 (456)
Q Consensus 275 ~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~ 303 (456)
+...+..+.+++..+.|...|.+||...+
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 34456667777778888888889996543
No 117
>CHL00020 psbN photosystem II protein N
Probab=37.56 E-value=29 Score=22.22 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCcc
Q 012823 275 IVRTSITLCSTVYITTSFFGLLLFGDRTL 303 (456)
Q Consensus 275 ~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~ 303 (456)
+...+..+.+++..+.|..-|.+||+..+
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 44566667777777777888889997533
No 118
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=36.32 E-value=2.3e+02 Score=29.77 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=46.2
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHc
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTES-SIDMIMRFSRASKSATYSGVVADAF 112 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~G-iL~lP~~f~~~G~~~gii~li~~~~l~~~-t~~~l~~~~~~~~~~~y~~l~~~~~ 112 (456)
+...|+..++-....+..+.+|++ ++++|.-..+.|.-..... ..+++... ..+...-...+.+..+-.|--++-|
T Consensus 41 ~l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~--~~~l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~Rf 118 (585)
T KOG2349|consen 41 FLGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFE--WNALLSVLLLGWIFIPVFYRLGVTTMYEYLEKRF 118 (585)
T ss_pred hhcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHH--HHHHHHHHhhheEEEEEEEecCeeehhHHHHHHh
Confidence 456677777777777777777665 5588877777774321111 11111110 0111111111345555555567777
Q ss_pred chhHHHHHHHHHHH
Q 012823 113 GGAGRALLQVCIVV 126 (456)
Q Consensus 113 G~~~~~~~~~~~~~ 126 (456)
|++.+....+...+
T Consensus 119 ~~~~r~l~~l~f~l 132 (585)
T KOG2349|consen 119 GGRVRYLATLSFIL 132 (585)
T ss_pred cccchhhHHHHHHH
Confidence 77755554444433
No 119
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=35.95 E-value=4.5e+02 Score=26.41 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012823 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLS 144 (456)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~ 144 (456)
....+.++.+..+|+++..++.+...+..+++...+....++.+.
T Consensus 258 ~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~ 302 (445)
T PRK10644 258 SASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK 302 (445)
T ss_pred CCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888999999988888877777777776666666665543
No 120
>PRK10655 potE putrescine transporter; Provisional
Probab=35.04 E-value=4.8e+02 Score=26.13 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012823 101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGA 146 (456)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~ 146 (456)
.....+..+..+|+++..++.....+..+++..++....++.+...
T Consensus 257 ~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~ 302 (438)
T PRK10655 257 TAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSS 302 (438)
T ss_pred cchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788999998888888888888888888877777665443
No 121
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=34.37 E-value=2.5e+02 Score=28.76 Aligned_cols=38 Identities=8% Similarity=0.113 Sum_probs=29.7
Q ss_pred HHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012823 105 SGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (456)
Q Consensus 105 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l 143 (456)
.+.+++.+|.+. |.+.+...+.++|..-+.+-..+..+
T Consensus 276 v~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~ 313 (479)
T KOG1287|consen 276 VTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLF 313 (479)
T ss_pred HHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 457888999999 99999999999997776665555544
No 122
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=33.64 E-value=2.1e+02 Score=28.24 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHhhcCC-----hHHHHHhhchhhhhhHHHhhhhhHHhhh-----cCCCCcchh--hHHHHHHHHHHH
Q 012823 369 AVTAALMGFIFVGANFVPS-----IWDAFQFTGATAAVSVGFIFPAAIALRD-----THGIATKND--RLASWLMISLAV 436 (456)
Q Consensus 369 ~~~~~~~~~~~~ia~~~~~-----~~~i~~l~Ga~~~~~~~filP~~~yl~~-----~~~~~~~~~--~~~~~~i~~~g~ 436 (456)
...+++.....+.+.++|+ +...++..||... |+=.++-+.. ..++-.+-+ |.+-..++....
T Consensus 115 ~fK~i~~~~l~i~~FfIP~~~~~~~~~~v~~~Ga~~F-----ILvqLvLLvDFaH~w~e~wv~~~Edsr~wy~~Ll~~T~ 189 (426)
T KOG2592|consen 115 FFKFILWFGLIVGSFFIPNGFFISFWFYVSVFGAALF-----ILVQLVLLVDFAHSWNESWVEKVEDSRFWYAALLGVTL 189 (426)
T ss_pred HHHHHHHHHHHHheEEcCCccchhHHHHHHHHhHHHH-----HHHHHHHHHHHHhhHHHHHHHHhhchhHHHHHHHHHHH
Confidence 3456666777777888887 5556666666554 4444444442 111112223 555556666666
Q ss_pred HHHHHHHHHHH
Q 012823 437 SSSTVAVSSDI 447 (456)
Q Consensus 437 ~~~v~~~~~~i 447 (456)
.+-+++...++
T Consensus 190 ~~Y~~s~~~~~ 200 (426)
T KOG2592|consen 190 LMYLLSLVATV 200 (426)
T ss_pred HHHHHHHHHHH
Confidence 65555555444
No 123
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=33.46 E-value=2.4e+02 Score=29.99 Aligned_cols=77 Identities=10% Similarity=-0.043 Sum_probs=46.7
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHH--HhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATV--KELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f--~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G 113 (456)
++.++...+.-...++ .....++......+ .+..++..++.+++..+++.-+.+...+... ++...+..+.+..+|
T Consensus 349 ~~~~~vP~ww~~~~~~-~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~-~P~~~~~~~sqli~g 426 (624)
T PF03169_consen 349 RTYKEVPMWWYLAGLV-VSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI-NPVSGLNILSQLIFG 426 (624)
T ss_pred hhcCCcchHHHHHHHH-HHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC-CcchhhhHHHHHHHH
Confidence 3344444333333332 34455667777778 4567777777777777777777777776655 445566666666665
Q ss_pred h
Q 012823 114 G 114 (456)
Q Consensus 114 ~ 114 (456)
-
T Consensus 427 ~ 427 (624)
T PF03169_consen 427 L 427 (624)
T ss_pred H
Confidence 3
No 124
>PRK09928 choline transport protein BetT; Provisional
Probab=31.56 E-value=6.9e+02 Score=26.94 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=54.2
Q ss_pred CCCCccHHHHHHHHHHHHHhhhhchH----HHH-HHh--hC---h----HHHHHHHHHHHHHHHHHHHHHHHHH------
Q 012823 37 GIDGASFSGAVFNLSTTIVGAGIMAL----PAT-VKE--LG---L----IPGLIMIVLVGWLTESSIDMIMRFS------ 96 (456)
Q Consensus 37 ~~~~~s~~~~~~~li~~~iG~GiL~l----P~~-f~~--~G---~----~~gii~li~~~~l~~~t~~~l~~~~------ 96 (456)
.+.+-|.++.+..+..+-+|.|++.- |.. +.. .| - -.+.....+=..+..|+.+.+.-..
T Consensus 89 ~kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~y 168 (679)
T PRK09928 89 SKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSY 168 (679)
T ss_pred CCCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34556777778899999999998743 422 211 12 1 1233333333334444444443322
Q ss_pred hhcCCCCHHHHHHHHcc-----hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012823 97 RASKSATYSGVVADAFG-----GAGRALLQVCIVVNNLGMLVVYMIIIGD 141 (456)
Q Consensus 97 ~~~~~~~y~~l~~~~~G-----~~~~~~~~~~~~~~~~g~~~~y~~~~~~ 141 (456)
+++..-+.++..+-.+| +.|+.+=.+.++...+|.+.+.-....+
T Consensus 169 r~~~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~q 218 (679)
T PRK09928 169 RYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQ 218 (679)
T ss_pred cCCCCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333556666665665 4455555555555566655554444333
No 125
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=30.17 E-value=6e+02 Score=25.81 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=39.7
Q ss_pred CCC-HHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 012823 101 SAT-YSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (456)
Q Consensus 101 ~~~-y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (456)
... ..++++..+|+++..++.+...+..+++..+++...++.+.....
T Consensus 266 ~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amar 314 (473)
T TIGR00905 266 PNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAK 314 (473)
T ss_pred CCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344 678889999999999999999999999999999888887765543
No 126
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.12 E-value=2.8e+02 Score=22.04 Aligned_cols=47 Identities=11% Similarity=-0.101 Sum_probs=29.7
Q ss_pred hhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Q 012823 58 GIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATY 104 (456)
Q Consensus 58 GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y 104 (456)
-++++|.+..-++|.......++..++..+-.-...+-.++.+-++|
T Consensus 35 l~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~y 81 (111)
T TIGR03750 35 LVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGY 81 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchH
Confidence 45678877766688888777777777776655554444444444443
No 127
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=29.03 E-value=1.2e+02 Score=25.40 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=24.0
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012823 417 HGIATKNDRLASWLMISLAVSSSTVAVSSDIY 448 (456)
Q Consensus 417 ~~~~~~~~~~~~~~i~~~g~~~~v~~~~~~i~ 448 (456)
++..++..+..|+.+-.+++++.+.|.+...+
T Consensus 33 ~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~ 64 (143)
T cd08763 33 RNETKRSTKILHGLLHIMALVISLVGLVAVFD 64 (143)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566779999999999999999876543
No 128
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=28.17 E-value=2.6e+02 Score=21.01 Aligned_cols=64 Identities=8% Similarity=0.098 Sum_probs=34.2
Q ss_pred hhhhhhhhhhhhchhHHHhhcCCCcc-hhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCC
Q 012823 246 FPVLVTAYICHHNIHPIENELKDPTQ-IKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANF 310 (456)
Q Consensus 246 ~~~~~faf~~h~~~~~i~~~m~~p~~-~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~ 310 (456)
.|+...+-.|.....+..+.=.+|.. ..|++. ....+..+-+..|++.|..||....+.....+
T Consensus 17 ~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalS-ii~FIlG~vl~lGilifs~y~~C~~~~~~~r~ 81 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKNTSNVTDYVWRALS-VTCFIVGAVLLLGLFVFSMYRKCSGSMPYERL 81 (91)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCCceeecc
Confidence 34444444454444565554445553 334443 33344445566778888888865544333444
No 129
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=27.72 E-value=4.4e+02 Score=26.63 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHhhcCC--h---HHHHHhhchhhhhhHHHhh
Q 012823 368 FAVTAALMGFIFVGANFVPS--I---WDAFQFTGATAAVSVGFIF 407 (456)
Q Consensus 368 ~~~~~~~~~~~~~ia~~~~~--~---~~i~~l~Ga~~~~~~~fil 407 (456)
....+.+++...+.+.++|+ + ..-++.+|+....++..|+
T Consensus 112 W~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga~~FiliQlIl 156 (429)
T PF03348_consen 112 WFLKFLLLIGLIVGAFFIPNGSFINVYMYVARVGAFIFILIQLIL 156 (429)
T ss_pred HHHHHHHHHHHHheeEEeCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888899999 2 3344555555554444443
No 130
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=27.21 E-value=1.5e+02 Score=21.90 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=31.4
Q ss_pred cCChHHHHHhhchhhhhhHHHhhhhhHHhhhc--CCCCcchhhHHHHHHHHHHHHH
Q 012823 385 VPSIWDAFQFTGATAAVSVGFIFPAAIALRDT--HGIATKNDRLASWLMISLAVSS 438 (456)
Q Consensus 385 ~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~~--~~~~~~~~~~~~~~i~~~g~~~ 438 (456)
..+...+...-+++++.-+ .++|.+.|...+ +...++.|+...+.+..+-.-+
T Consensus 11 ~~~~l~vl~~y~~l~~~YL-lVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~FFPG 65 (81)
T PF10716_consen 11 PSDTLLVLLAYAALAGLYL-LVVPLILYFWMNKRWYVMSSFERLFMYFLVFLFFPG 65 (81)
T ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444445555555444 678888776644 3345677888877776655433
No 131
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=27.13 E-value=3.4e+02 Score=21.96 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=33.0
Q ss_pred CCccHHHHHHHHHHHHHhhhhchHHHHHHhhChH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 012823 39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLI-PGLIMIVLVGWLTESSIDMIMRFSRASKS 101 (456)
Q Consensus 39 ~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~-~gii~li~~~~l~~~t~~~l~~~~~~~~~ 101 (456)
++.|.-.-.....-+.+-.-++++|.++. .||+ .+..+.++..+++.+-.--+.+-.++.+-
T Consensus 19 rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~~gg~~l~rlKRGKP 81 (121)
T PF11990_consen 19 RGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVFVGGKLLARLKRGKP 81 (121)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCc
Confidence 34444333333333333336778998887 6665 56666666666666554444443343333
No 132
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=26.84 E-value=6.5e+02 Score=25.16 Aligned_cols=46 Identities=4% Similarity=0.047 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHcch--hHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012823 101 SATYSGVVADAFGG--AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGA 146 (456)
Q Consensus 101 ~~~y~~l~~~~~G~--~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~ 146 (456)
.....+..+..+|. +...++.+...+..+++..+.+...++.+...
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ 306 (442)
T TIGR00908 259 NNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFAL 306 (442)
T ss_pred cchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888874 23344444444444555555555555554433
No 133
>PRK11021 putative transporter; Provisional
Probab=25.30 E-value=6.7e+02 Score=24.78 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=34.1
Q ss_pred CCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012823 102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (456)
Q Consensus 102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (456)
....+..++.+|+++..++.+...+..+++..++....++.+....
T Consensus 246 ~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~a 291 (410)
T PRK11021 246 ASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQA 291 (410)
T ss_pred ccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888999988888887778888887777766666665443
No 134
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=24.79 E-value=3.8e+02 Score=23.98 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhc
Q 012823 320 SLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLL 353 (456)
Q Consensus 320 ~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~~~~~ 353 (456)
+.+....++...+....+.|...+-...-+..-+
T Consensus 59 e~f~~~lk~s~~~~~~~~~P~~~yq~w~Fi~PgL 92 (215)
T PF00902_consen 59 EAFFTYLKLSFFLGLIISLPYILYQIWAFIAPGL 92 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 5677889999999999999999998887666544
No 135
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=24.69 E-value=7.2e+02 Score=24.89 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012823 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSG 145 (456)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~ 145 (456)
......+..++.+|+++..++.+...+.++++..+.....++....
T Consensus 254 ~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~ 299 (435)
T PRK10435 254 SGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVR 299 (435)
T ss_pred CCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888999999999988888888888776776666665544
No 136
>PRK11387 S-methylmethionine transporter; Provisional
Probab=24.55 E-value=7.5e+02 Score=25.07 Aligned_cols=47 Identities=11% Similarity=-0.006 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012823 101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (456)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (456)
...+.++.++..|+++..++.+...+..+++..+.+...++.+..+.
T Consensus 274 ~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~a 320 (471)
T PRK11387 274 KSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLS 320 (471)
T ss_pred CChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45788888888889999999999999999888888877777665544
No 137
>TIGR00930 2a30 K-Cl cotransporter.
Probab=24.06 E-value=1.1e+03 Score=26.77 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 012823 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (456)
Q Consensus 116 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (456)
+.+++.+..++..+++..+.+...+..+..+..
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmAr 418 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQALCK 418 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777788888888888888888888765554
No 138
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=23.92 E-value=7.5e+02 Score=24.85 Aligned_cols=124 Identities=14% Similarity=0.160 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhh---cCCCcc-hhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 012823 273 KSIVRTSITLCSTVYITTSFFGLLL---FGDRTL-DDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLN 348 (456)
Q Consensus 273 ~~~~~~s~~i~~~~Y~~~g~~gy~~---fG~~~~-~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~ 348 (456)
.++-.++-..-..+|...+..|... .++..+ ..++....++. +++.-..+..+...+.++++---..-.+.|.
T Consensus 227 ~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~---fG~~G~~lL~~iv~lACLTTaiGLi~a~aef 303 (431)
T COG1114 227 IKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHL---FGSYGSILLGLIVFLACLTTAVGLIVACAEF 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHH---hchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677788888877432 222222 34444444331 1122333444556666666666666777777
Q ss_pred HHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhh
Q 012823 349 LDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALR 414 (456)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~ 414 (456)
+.++.. + .+-+.++ .+..+.++++|.. .++.++.+ ....+.+++|..+-+.
T Consensus 304 F~~~~p--~----~SY~~~v---~if~i~sflvan~--GL~~Ii~i----svPvL~~iYPiaI~Lv 354 (431)
T COG1114 304 FSKLVP--K----LSYKTWV---IIFTLISFLVANL--GLEQIIKI----SVPVLTAIYPIAIALV 354 (431)
T ss_pred HHHhcc--c----ccHHHHH---HHHHHHHHHHHHh--hHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 776652 1 1222222 2344555555432 34555544 4567778888876665
No 139
>PLN02351 cytochromes b561 family protein
Probab=23.89 E-value=5.7e+02 Score=23.49 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=44.8
Q ss_pred HhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhh
Q 012823 263 ENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVF 342 (456)
Q Consensus 263 ~~~m~~p~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~ 342 (456)
++..+.++|.+|.+-+..-...++...+|+.. .|- .+++...|+- ++++|+-...-.++.++-+..+....
T Consensus 73 YR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh--~~~~~i~nly-----SLHSWlGl~tv~Lf~lQwv~Gf~~F~ 143 (242)
T PLN02351 73 HRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFH--GQDGIVANFY-----SLHSWMGLICVSLFGAQWLTGFMSFW 143 (242)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHh--cccCCccchh-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666667777766666655555555555 332 2222223332 33578888887888888877777666
Q ss_pred hHHH
Q 012823 343 FSLR 346 (456)
Q Consensus 343 ~~~~ 346 (456)
+|..
T Consensus 144 ~P~~ 147 (242)
T PLN02351 144 HRGE 147 (242)
T ss_pred cCCC
Confidence 6553
No 140
>PRK09928 choline transport protein BetT; Provisional
Probab=23.02 E-value=9.7e+02 Score=25.85 Aligned_cols=81 Identities=10% Similarity=0.088 Sum_probs=39.5
Q ss_pred hHHHHHHH----HHHHHHHHHHHhh-hhhhcCCCcchhhhhCC----CCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhh
Q 012823 273 KSIVRTSI----TLCSTVYITTSFF-GLLLFGDRTLDDVLANF----DGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFF 343 (456)
Q Consensus 273 ~~~~~~s~----~i~~~~Y~~~g~~-gy~~fG~~~~~~il~~~----~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~ 343 (456)
+.++.+++ ...-.+|...|.. +|..|..+..-.+-..+ .+.-..+.++.+-.++-+.....+.+|.-+-..
T Consensus 138 ~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~~~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~ 217 (679)
T PRK09928 138 RQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVV 217 (679)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCCCCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554 2566778877764 77777655432221111 111111222333333334444455556655555
Q ss_pred HHHHHHHHhc
Q 012823 344 SLRLNLDGLL 353 (456)
Q Consensus 344 ~~~~~~~~~~ 353 (456)
-....+..++
T Consensus 218 qi~~GL~~lf 227 (679)
T PRK09928 218 QLNYGLSVLF 227 (679)
T ss_pred HHHHHHHHHc
Confidence 5666666664
No 141
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=22.97 E-value=4e+02 Score=21.33 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHHHHHhhhhchHHHHHHhh---ChHHHHHHHHHHHHH----HHHHHHHHHHHHhhcCCCCHHHH
Q 012823 41 ASFSGAVFNLSTTIVGAGIMALPATVKEL---GLIPGLIMIVLVGWL----TESSIDMIMRFSRASKSATYSGV 107 (456)
Q Consensus 41 ~s~~~~~~~li~~~iG~GiL~lP~~f~~~---G~~~gii~li~~~~l----~~~t~~~l~~~~~~~~~~~y~~l 107 (456)
..+...++.+.=..+|+..+.+...+... |-..-...+++.|++ ..|-..+...+.+..+..+|.++
T Consensus 39 ~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~Gysf~~I 112 (115)
T PF05915_consen 39 IPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYKGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCCCCCHhhC
Confidence 34666666666667777777666443311 111112222333333 34555666666777778888775
No 142
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=22.78 E-value=2.8e+02 Score=25.76 Aligned_cols=34 Identities=15% Similarity=0.365 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhc
Q 012823 320 SLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLL 353 (456)
Q Consensus 320 ~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~~~~~ 353 (456)
..+....++...+.+.++.|...+-.-.-+..-+
T Consensus 66 e~f~~~lk~sl~~g~~la~P~ilyqiw~Fi~PgL 99 (258)
T PRK10921 66 SPFFTPIKLTFMVSLILSAPVILYQVWAFIAPAL 99 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5677788999999999999999997776655444
No 143
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=22.71 E-value=8.3e+02 Score=24.95 Aligned_cols=53 Identities=8% Similarity=-0.030 Sum_probs=35.4
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhc--CChHHHHHhhchhhhhhHHHhhhhhHHhh
Q 012823 362 FDNRRFFAVTAALMGFIFVGANFV--PSIWDAFQFTGATAAVSVGFIFPAAIALR 414 (456)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ia~~~--~~~~~i~~l~Ga~~~~~~~filP~~~yl~ 414 (456)
+.|.|+...|.+.++++.++++.. .++..+.++.-.+-+..+=|..=.+++..
T Consensus 354 ~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ft 408 (503)
T KOG1291|consen 354 PPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFT 408 (503)
T ss_pred hHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhh
Confidence 457778899999999999998864 46666777666555555544433344443
No 144
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=22.49 E-value=4.5e+02 Score=22.07 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=10.5
Q ss_pred hhHHHhhhhhHHhhhcC
Q 012823 401 VSVGFIFPAAIALRDTH 417 (456)
Q Consensus 401 ~~~~filP~~~yl~~~~ 417 (456)
..+.-++|+++.++.+-
T Consensus 72 ~l~~~vlP~~~l~~~~i 88 (156)
T PF08019_consen 72 LLLLGVLPALLLWRVRI 88 (156)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445678888777443
No 145
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=20.74 E-value=5e+02 Score=23.13 Aligned_cols=59 Identities=12% Similarity=-0.003 Sum_probs=30.9
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMR 94 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~ 94 (456)
++.++.+.+.+...-+.+.+=+=...+-.++.+...+...+...++.++..+....+.+
T Consensus 121 d~s~~i~~~e~l~L~iAlSiDalavG~s~~~~g~~~~~~~~~igivs~i~~~~G~~lG~ 179 (206)
T TIGR02840 121 DKSGNISGKEALLLGIALSLDAFGAGIGASLLGLNPLATSILVAVMSFIFVSLGLFLGK 179 (206)
T ss_pred ccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444665555444333332222222234555555566666666677777777766665
No 146
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=20.38 E-value=1.3e+02 Score=25.83 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=22.9
Q ss_pred CCCccHHHHHHHHHHHHHhhhhchHHHHHHh
Q 012823 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKE 68 (456)
Q Consensus 38 ~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~ 68 (456)
.+...+..+..+-+...+|.-+--+|+-+..
T Consensus 84 ~~~~p~~aAl~sgls~~~g~liPllp~~~~~ 114 (169)
T TIGR00267 84 ARRRVYMSGFIDGFSTFMGSFVPVLPFLVFD 114 (169)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445666777788888998877788987644
No 147
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.30 E-value=4.8e+02 Score=21.78 Aligned_cols=73 Identities=14% Similarity=0.272 Sum_probs=45.3
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhH
Q 012823 265 ELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFS 344 (456)
Q Consensus 265 ~m~~p~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~ 344 (456)
..+.++|.+|.+-+..-....+...+|+..-..+-+.. +. .|+ .+.++++-...-+++.++.+..+....+|
T Consensus 32 ~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~-~~~-----~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P 103 (144)
T cd08766 32 TVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GI-PNL-----YSLHSWLGIGTISLFGLQWLFGFVTFWFP 103 (144)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--Cc-ccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555666677777777777777777775444443322 22 222 22357888888788888887777666666
Q ss_pred H
Q 012823 345 L 345 (456)
Q Consensus 345 ~ 345 (456)
.
T Consensus 104 ~ 104 (144)
T cd08766 104 G 104 (144)
T ss_pred C
Confidence 5
No 148
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=20.19 E-value=5.6e+02 Score=22.11 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=39.8
Q ss_pred HHHhhhhchHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHHHHHHHHHHHHH
Q 012823 53 TIVGAGIMALPATVKE--LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNN 128 (456)
Q Consensus 53 ~~iG~GiL~lP~~f~~--~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~ 128 (456)
+-+|.++|..|++... -+|+.-.+..++.+++++.++.+..- +-++.-|.|...+..+......
T Consensus 47 T~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~------------~l~k~~g~W~Gi~YG~~~W~iv 112 (173)
T PF11085_consen 47 TEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYA------------LLKKFKGPWPGILYGLAWWAIV 112 (173)
T ss_pred cccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHhcccchHHHHHHHHHHHH
Confidence 4578999999998653 35555555566666666655554422 2355556777777666665433
No 149
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=20.14 E-value=4.6e+02 Score=21.79 Aligned_cols=41 Identities=7% Similarity=0.019 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcch
Q 012823 73 PGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG 114 (456)
Q Consensus 73 ~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~ 114 (456)
.-.++.+..-++..||.+...+.+.+.+... .|++++-+|+
T Consensus 139 fwPILvvYfi~l~f~t~rRqIqHM~KYrY~P-fdigKkky~s 179 (180)
T COG5249 139 FWPILVVYFIFLVFYTARRQIQHMKKYRYNP-FDIGKKKYKS 179 (180)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhhhhcc
Confidence 3567777788899999999999887664433 4666666553
Done!