Query 012823
Match_columns 456
No_of_seqs 115 out of 1181
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 16:55:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.7 2.5E-15 8.7E-20 150.9 32.1 355 36-419 5-379 (445)
2 3gia_A Uncharacterized protein 99.6 1.3E-12 4.6E-17 130.9 31.4 241 36-299 3-248 (444)
3 4djk_A Probable glutamate/gamm 99.4 4.3E-10 1.5E-14 114.8 34.5 246 36-301 8-263 (511)
4 2jln_A MHP1; hydantoin, transp 98.8 9.3E-06 3.2E-10 82.1 31.7 340 39-414 25-385 (501)
5 3dh4_A Sodium/glucose cotransp 98.4 0.0021 7.1E-08 65.3 35.1 90 35-125 16-106 (530)
6 2xq2_A Sodium/glucose cotransp 97.9 0.011 3.6E-07 60.9 29.2 89 36-125 46-135 (593)
7 2a65_A Leutaa, Na(+):neurotran 92.5 9.4 0.00032 38.0 34.1 55 40-94 8-67 (519)
8 3l1l_A Arginine/agmatine antip 57.9 74 0.0025 30.4 11.3 48 100-147 258-305 (445)
9 3tx3_A Uncharacterized protein 51.1 1.3E+02 0.0044 26.5 10.6 35 264-299 22-56 (249)
10 2wsw_A BCCT family betaine/car 46.5 99 0.0034 30.5 9.8 158 38-207 88-274 (509)
11 4djk_A Probable glutamate/gamm 35.2 3.1E+02 0.011 26.4 13.6 34 114-147 287-320 (511)
12 3gia_A Uncharacterized protein 34.9 87 0.003 29.9 7.5 45 102-146 258-302 (444)
13 4ain_A Glycine betaine transpo 34.3 37 0.0013 33.8 4.6 107 36-142 91-221 (539)
14 4b4a_A TATC, SEC-independent p 30.5 2.8E+02 0.0095 24.3 12.7 95 320-417 59-176 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.74 E-value=2.5e-15 Score=150.89 Aligned_cols=355 Identities=11% Similarity=0.000 Sum_probs=210.0
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcch
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (456)
+.+|+.+.++.+...+++++|+|++.+|....++|.. +++..++.+++.......+.|..++. +.....+..++.+||
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 83 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGP 83 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCC
Confidence 4568899999999999999999999999888888974 78888888888888888888887654 445788889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 012823 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (456)
+..++......+........+....++.+...+++. +++ -.........+++.-....+..+...
T Consensus 84 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----~~~~~~~~~~~~~~~~in~~g~~~~~ 148 (445)
T 3l1l_A 84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----------KDP----WVLTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----------GSH----HHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----------ccc----HHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 999999999888877777778888888776544320 000 01111111222222233334555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc--ccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc-c
Q 012823 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS--KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-Q 271 (456)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~-~ 271 (456)
.++.+.....+...++.+ +......+. ....+.+. ...++.++..++....|+|.+........+|+|||+ +
T Consensus 149 ~~~~~~~~~~i~~~~~~~---i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ 223 (445)
T 3l1l_A 149 RVQAVATVLALIPIVGIA---VFGWFWFRG--ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRN 223 (445)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTTSTTCCC--CCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhCh--hhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccc
Confidence 554444322222221111 111111111 11111111 112356788899999999999999999999999996 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcch----hhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 012823 272 IKSIVRTSITLCSTVYITTSFFGLLLFGDRTLD----DVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRL 347 (456)
Q Consensus 272 ~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~ 347 (456)
.+|++..+..++.++|....+......+.+... +..+-..+- .+++...+..+...+..+.+.....+...+
T Consensus 224 ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR 299 (445)
T 3l1l_A 224 VPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMA----LGDTAGAIVSFCAAAGCLGSLGGWTLLAGQ 299 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHH----HCTTHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988877666543211 111100000 012333444555555655565555555555
Q ss_pred HHHHhcCCCCCCC-----C-CCCcchhhHHHHHHHHHHHHHhh--c----CChHHHHHhhchhhhhhHHHhhhhhHHhhh
Q 012823 348 NLDGLLFPYAIPI-----A-FDNRRFFAVTAALMGFIFVGANF--V----PSIWDAFQFTGATAAVSVGFIFPAAIALRD 415 (456)
Q Consensus 348 ~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~ia~~--~----~~~~~i~~l~Ga~~~~~~~filP~~~yl~~ 415 (456)
.+.....++.-|+ + .+...+... ...+.+.++... . ..++.+.++.+ ....+.|.++.+.+++.
T Consensus 300 ~~~~~a~dg~lP~~~~~~~~~~~P~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~ 375 (445)
T 3l1l_A 300 TAKAAADDGLFPPIFARVNKAGTPVAGLI--IVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLL 375 (445)
T ss_dssp HHHHHHHTTSSCGGGGCCCTTCCCHHHHH--HHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHhcCCCCCCHHHHH--HHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4444332222111 0 111112111 111212222222 1 34566666643 45567788999988886
Q ss_pred cCCC
Q 012823 416 THGI 419 (456)
Q Consensus 416 ~~~~ 419 (456)
++++
T Consensus 376 r~~~ 379 (445)
T 3l1l_A 376 GHGH 379 (445)
T ss_dssp HSSS
T ss_pred hhcC
Confidence 6554
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.60 E-value=1.3e-12 Score=130.93 Aligned_cols=241 Identities=11% Similarity=0.112 Sum_probs=154.7
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFG 113 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP-~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G 113 (456)
+++|+.+.++.+...+++++|+|++..| .+..++|- .+++..++.+++.......+.|...+. +.....+.+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhC
Confidence 4578999999999999999999999887 45666776 577888888888888888888887754 34567788899999
Q ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 012823 114 GA--GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (456)
Q Consensus 114 ~~--~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 191 (456)
++ +.++ .....+........+....++.+...++.. +. ...........+++.-....+..+
T Consensus 82 ~~~~~g~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~---~~~~~~~~~~~~~~~~~in~~g~~ 145 (444)
T 3gia_A 82 DNIITGAL-SILLWMSYVISIALFAKGFAGYFLPLINAP------------IN---TFNIAITEIGIVAFFTALNFFGSK 145 (444)
T ss_dssp SSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------------CC---HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------Cc---hHHHHHHHHHHHHHHHHHHHHhHH
Confidence 86 3333 344444444456666666666664433210 00 000011111222222233334555
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc-
Q 012823 192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT- 270 (456)
Q Consensus 192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~- 270 (456)
....++.+.....+...++.+...+... +. .+..|... ..++.+++.++....|+|.+........+|+|||+
T Consensus 146 ~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~--~~~~~~~~-~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r 219 (444)
T 3gia_A 146 AVGRAEFFIVLVKLLILGLFIFAGLITI---HP--SYVIPDLA-PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKK 219 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---CG--GGTSCCCS-HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc---Ch--hhcCCCCC-CcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc
Confidence 5555544443222222222222222221 11 11222111 23456788889999999999999999999999998
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 012823 271 QIKSIVRTSITLCSTVYITTSFFGLLLFG 299 (456)
Q Consensus 271 ~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 299 (456)
+.+|++..+..++.++|....+......+
T Consensus 220 ~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 220 NVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 58999999999999999998877665554
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.43 E-value=4.3e-10 Score=114.76 Aligned_cols=246 Identities=10% Similarity=0.053 Sum_probs=139.3
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHHh--hcCCCCHHHHHHHHc
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTE-SSIDMIMRFSR--ASKSATYSGVVADAF 112 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~-~t~~~l~~~~~--~~~~~~y~~l~~~~~ 112 (456)
+.+|+.+.++.+...++.++| +..+|. ...+|.. .++..++.+++.. .....+.|... ..+.......+++.+
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P~GG~y~~~~~~~ 83 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTL 83 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC---CHHHHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCCCCChhhhHHhhc
Confidence 567889999999999999986 667775 4567753 3334334343332 35666777666 444667888889999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccch
Q 012823 113 GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (456)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (456)
|++.+++......+........+....++.+...+.. +.. +...+ ... ...+..+++.-....+..+.
T Consensus 84 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------p~~-~~~~~-~~~--~~~~~~~~~~~~in~~g~~~ 151 (511)
T 4djk_A 84 GPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW--------PAL-NEDPI-TKT--IAALIILWALALTQFGGTKY 151 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTC--------GGG-TSCSS-HHH--HHHHHHHHHHHHHHHTCSSS
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------ccc-ccCcH-HHH--HHHHHHHHHHHHHHHhChHH
Confidence 9999988888877776665556655555555332100 011 11111 111 11112222222333344555
Q ss_pred hhhhhHHHHHHHHHH-HHHHHHHHHHHhhcCCC-----CCCCCCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhc
Q 012823 193 LRYTSALSVGLAIVF-VVITAGVAIVKTIDGSI-----SMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENEL 266 (456)
Q Consensus 193 l~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m 266 (456)
...++.+...+.++. +++.+...+.....++. +.....|+.. ..+...++...+|+|.+........+|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~G~e~~~~~a~E~ 227 (511)
T 4djk_A 152 TARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFS----KVGTLVVFVAFILSYMGVEASATHVNEM 227 (511)
T ss_dssp HHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTT----STTTTTTHHHHHHHHTTGGGGTGGGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcc----cchHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 555544432221111 11111122222222211 1111122211 1223456778899999999999999999
Q ss_pred CCCc-chhHHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 012823 267 KDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGDR 301 (456)
Q Consensus 267 ~~p~-~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~ 301 (456)
|||+ +.+|++..+..++.++|+...+......+++
T Consensus 228 k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 228 SNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp SCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 9998 6899999999999999999988877766643
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.81 E-value=9.3e-06 Score=82.08 Aligned_cols=340 Identities=9% Similarity=-0.012 Sum_probs=173.5
Q ss_pred CCccHHHHHHHHHHHHHhhhhchHHHHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHH
Q 012823 39 DGASFSGAVFNLSTTIVGAGIMALPATVKE-LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGR 117 (456)
Q Consensus 39 ~~~s~~~~~~~li~~~iG~GiL~lP~~f~~-~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~ 117 (456)
|+.+.++-+..-++..++.+.+.+...+.. .++.-+++.+++..++......+..+...+.+.. +.++.+..||+++.
T Consensus 25 R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~-~~v~~R~~FG~~Gs 103 (501)
T 2jln_A 25 RSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGIN-FTVAARMPFGIRGS 103 (501)
T ss_dssp CCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCC-HHHHTTTTSCTTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCC-hhhhhHhhcchhHH
Confidence 556777777777777777777766655443 3466677777766666665555555666666554 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhh
Q 012823 118 ALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTS 197 (456)
Q Consensus 118 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 197 (456)
.+..++..+...|-...-....++.+...+.. .++. .. .....++..++.+++.+ ..++.++.+.
T Consensus 104 ~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~----------~~g~---~~-~~v~~~i~~~l~~~~~~-~G~~~i~~~~ 168 (501)
T 2jln_A 104 LIPITLKALLSLFWFGFQTWLGALALDEITRL----------LTGF---TN-LPLWIVIFGAIQVVTTF-YGITFIRWMN 168 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHCC---CC-HHHHHHHHHHHHHHHHT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCc---ch-HHHHHHHHHHHHHHHHH-hCHHHHHHHH
Confidence 99999999998888887777788877554310 1110 11 11222223334444443 3445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCCCCcccccchhhhHHHHhhhh-hhhhhhhhchhHHHhhcCCCcc---
Q 012823 198 ALSVGLAIVFVVITAGVAIVKTIDGSI--SMPCLLPEISKQASFWKLFTTFPVL-VTAYICHHNIHPIENELKDPTQ--- 271 (456)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~-~faf~~h~~~~~i~~~m~~p~~--- 271 (456)
.+.....+..++......+.+ .+. ......+... ....+..++... .+.-....+.+...+.+|++++
T Consensus 169 ~~~~p~~~i~~i~~~~~~l~~---~g~~~~~~~~~~~~~---~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~ 242 (501)
T 2jln_A 169 VFASPVLLAMGVYMVYLMLDG---ADVSLGEVMSMGGEN---PGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASR 242 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HTCCHHHHTTCCCSS---CCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cCCcchhhhccCCcc---chHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccc
Confidence 444322222222222111111 111 0000011101 112233333331 2222344778999999998876
Q ss_pred ---------hhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhC-CCCCCCCCcccHHHHHHH-HHHHHHHHHhhh-
Q 012823 272 ---------IKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLAN-FDGDLGIPYSSLLDDVVR-VSYGIHLMLVFP- 339 (456)
Q Consensus 272 ---------~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~-~~~~~~~~~~~~~~~~~~-i~~~i~~~~s~p- 339 (456)
.......+..+...+...+|.......+......++.. ++.. ..+....- +...+..+.+--
T Consensus 243 ~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~------~~~~~~~~~~~~~la~i~tn~~ 316 (501)
T 2jln_A 243 EGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGV------SIPMAILFQVFVLLATWSTNPA 316 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCC------CHHHHHHHHHHHHHHHHTTHHH
T ss_pred cchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344555555555555543333333222233322 2111 11122333 444444444443
Q ss_pred hhhhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhc--CChHHHHHhhchhhhhhHHHhhhhhHHhh
Q 012823 340 IVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFV--PSIWDAFQFTGATAAVSVGFIFPAAIALR 414 (456)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~--~~~~~i~~l~Ga~~~~~~~filP~~~yl~ 414 (456)
-..++....+.+.. ++.. + .|+. +++..+++.+++... ..+.+++++.|.......+..+-=++..|
T Consensus 317 ~n~ys~~~~l~~~~-~~~i----~-~~~~--~~i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~P~~gI~l~Dy~i~r 385 (501)
T 2jln_A 317 ANLLSPAYTLCSTF-PRVF----T-FKTG--VIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIMISDYFLVR 385 (501)
T ss_dssp HHTHHHHHHHHHHS-TTTC----C-HHHH--HHHHHHHHHHTCGGGTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHhC-cccc----c-hhHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36778877777774 2211 1 1221 222233344444332 34666777777776666555544444333
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.39 E-value=0.0021 Score=65.31 Aligned_cols=90 Identities=10% Similarity=0.021 Sum_probs=59.1
Q ss_pred ccCCCCccHHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcc
Q 012823 35 EAGIDGASFSGAVFNLSTTIVGAGI-MALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG 113 (456)
Q Consensus 35 ~~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G 113 (456)
+-..|+.+++...+.+..+.+++.. +++|-...+.|+....... ..++........+....++.+..|.+|.-++-||
T Consensus 16 ~laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~-~~~~~~~i~~~~~~p~~~~~~~~T~~e~l~~Rfg 94 (530)
T 3dh4_A 16 XXAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEW-MSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFN 94 (530)
T ss_dssp HCCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHH-HHHHHHHHHHHHTHHHHHHTTCCSHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcC
Confidence 4667889999999988888877654 5888766667753221111 1111111223344445567789999999999999
Q ss_pred hhHHHHHHHHHH
Q 012823 114 GAGRALLQVCIV 125 (456)
Q Consensus 114 ~~~~~~~~~~~~ 125 (456)
++.+.+..++..
T Consensus 95 ~~~~~~~a~~~l 106 (530)
T 3dh4_A 95 KKLKTILAVFWI 106 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 998887766543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.92 E-value=0.011 Score=60.95 Aligned_cols=89 Identities=10% Similarity=0.012 Sum_probs=52.3
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcch
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGI-MALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG 114 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~Gi-L~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~ 114 (456)
-..|+.+++.....+..+.+++.. ++.|-...+.|+........ .++........+..-.++.+..|.+|.-++-||+
T Consensus 46 laGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 46 LAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNK 124 (593)
T ss_dssp -----CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHTTCCSHHHHHHHHTCH
T ss_pred cCCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHccC
Confidence 456788898888888777666554 58886666677532111110 1111111223344444577899999999999999
Q ss_pred hHHHHHHHHHH
Q 012823 115 AGRALLQVCIV 125 (456)
Q Consensus 115 ~~~~~~~~~~~ 125 (456)
+.+.+..++..
T Consensus 125 ~~~~~~ai~~l 135 (593)
T 2xq2_A 125 KLKTILAVFWI 135 (593)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 98877655433
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=92.46 E-value=9.4 Score=38.05 Aligned_cols=55 Identities=27% Similarity=0.347 Sum_probs=36.2
Q ss_pred CccHHHHHHHHHHHHHhhh-hchHHHHHHh-hC---hHHHHHHHHHHHHHHHHHHHHHHH
Q 012823 40 GASFSGAVFNLSTTIVGAG-IMALPATVKE-LG---LIPGLIMIVLVGWLTESSIDMIMR 94 (456)
Q Consensus 40 ~~s~~~~~~~li~~~iG~G-iL~lP~~f~~-~G---~~~gii~li~~~~l~~~t~~~l~~ 94 (456)
=.|..+-++..++..+|.| +.-.||--.+ +| .++=+++++++|+=..+.-..+.|
T Consensus 8 W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq 67 (519)
T 2a65_A 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67 (519)
T ss_dssp CSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3466777888899999999 7799987665 44 444455555555544444455555
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=57.85 E-value=74 Score=30.37 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012823 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (456)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (456)
......++.+..+|+++..++.+...+..+++..++....++.+..+.
T Consensus 258 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a 305 (445)
T 3l1l_A 258 SASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA 305 (445)
T ss_dssp TTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999998888887665443
No 9
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=51.05 E-value=1.3e+02 Score=26.52 Aligned_cols=35 Identities=6% Similarity=-0.027 Sum_probs=22.8
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 012823 264 NELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFG 299 (456)
Q Consensus 264 ~~m~~p~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG 299 (456)
+.+++| ++++.+.....+..++|..........++
T Consensus 22 ~~i~~p-~lr~~vl~Pllinl~L~~~~~~~~~~~~~ 56 (249)
T 3tx3_A 22 ELIRTK-GLRRYVVVPILTNLILFSLAFTWLYGEVD 56 (249)
T ss_dssp HHHTST-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566 77788888888888876665544433343
No 10
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=46.52 E-value=99 Score=30.49 Aligned_cols=158 Identities=12% Similarity=0.031 Sum_probs=75.1
Q ss_pred CCCccHHHHHHHHHHHHHhhhhchH----HHH-HHh------hCh----HHHHHHHHHHHHHHHHHHHHHHH------HH
Q 012823 38 IDGASFSGAVFNLSTTIVGAGIMAL----PAT-VKE------LGL----IPGLIMIVLVGWLTESSIDMIMR------FS 96 (456)
Q Consensus 38 ~~~~s~~~~~~~li~~~iG~GiL~l----P~~-f~~------~G~----~~gii~li~~~~l~~~t~~~l~~------~~ 96 (456)
+.+-|.++-+..+..+-+|.|++.- |.. +.+ .|- -.+.....+=..+..|+.+.+.- +.
T Consensus 88 kPefs~~sW~aMlF~aGmGiGl~fwgvaEP~~h~~~pP~~~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~y 167 (509)
T 2wsw_A 88 KPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFFF 167 (509)
T ss_dssp CCSSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSTTCCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHHhhhhHHhhhhhhhhHHHccCCCCCCCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4456777888889999999998754 322 211 110 11122222211222222222221 11
Q ss_pred -hhcCC-----CCHHHHH-HHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchh
Q 012823 97 -RASKS-----ATYSGVV-ADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTR 169 (456)
Q Consensus 97 -~~~~~-----~~y~~l~-~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (456)
++++. --|+-++ ++.-|+.|+.+=.+.++.+.+|.+.+.-....|.-..+ +..++.+. +..
T Consensus 168 ~r~~~pl~iss~l~PllG~~r~~G~~G~~IDilav~at~~G~atsLGlg~~qi~~Gl-----------~~lfGi~~-~~~ 235 (509)
T 2wsw_A 168 VRKMEVIRPSSTLVPLVGEKHVNGLFGTVVDNFYLVALILAMGTSLGLATPLVTECI-----------QYLFGIPH-TLQ 235 (509)
T ss_dssp TSCCCCCSGGGGCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHCCCC-CHH
T ss_pred HcCCCCcchHHHhHhhcCCcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHcCCCC-ccH
Confidence 11122 2366667 67777777766666677777776666544443332110 12222111 111
Q ss_pred HHHHHHHHHHHhhcccccccc-chhhhhhHHHHHHHHHH
Q 012823 170 FTLLLLTTLFVFLPLISFRRV-DSLRYTSALSVGLAIVF 207 (456)
Q Consensus 170 ~~~~~~~~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~ 207 (456)
....++....++.-++....+ |..|++|.+.+.+++..
T Consensus 236 ~qi~ii~vit~~~~~Sa~sGl~kGIk~LS~~N~~la~~L 274 (509)
T 2wsw_A 236 LDAIIISCWILLNAICVAFGLQKGVKIASDVRTYLSFLM 274 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 112222223344445555565 55777777666444433
No 11
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=35.20 E-value=3.1e+02 Score=26.39 Aligned_cols=34 Identities=3% Similarity=-0.014 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 012823 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (456)
++...++.+...+..+++..+++...+..+..+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 320 (511)
T 4djk_A 287 EWTVRVISALLLLGVLAEIASWIVGPSRGMYVTA 320 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5557777777777788877777777776665443
No 12
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=34.92 E-value=87 Score=29.88 Aligned_cols=45 Identities=9% Similarity=0.029 Sum_probs=34.7
Q ss_pred CCHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012823 102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGA 146 (456)
Q Consensus 102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~ 146 (456)
....+..+..+|+++..++.+...+..+++..+.+...+..+..+
T Consensus 258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~ 302 (444)
T 3gia_A 258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSL 302 (444)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888889999989988888888888888776666655443
No 13
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=34.35 E-value=37 Score=33.79 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=56.7
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhhchH----HHHHHhh---C-----hHHHHHHHHHHHHHHHHHHHHHHHHH------h
Q 012823 36 AGIDGASFSGAVFNLSTTIVGAGIMAL----PATVKEL---G-----LIPGLIMIVLVGWLTESSIDMIMRFS------R 97 (456)
Q Consensus 36 ~~~~~~s~~~~~~~li~~~iG~GiL~l----P~~f~~~---G-----~~~gii~li~~~~l~~~t~~~l~~~~------~ 97 (456)
+++.+-|.++-+..+..+-+|.|++.- |...-+. | .-.+.....+=..+..|+.+.+.-.. +
T Consensus 91 d~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yr 170 (539)
T 4ain_A 91 DEAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFR 170 (539)
T ss_dssp TCCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhc
Confidence 445667888889999999999998832 3221111 1 12233333333333344444443322 1
Q ss_pred hcCCCC-----HHHHHHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012823 98 ASKSAT-----YSGVVAD-AFGGAGRALLQVCIVVNNLGMLVVYMIIIGDV 142 (456)
Q Consensus 98 ~~~~~~-----y~~l~~~-~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~ 142 (456)
++...+ |+=++++ .-|+.|+.+=.+.++.+.+|.+.+.-...-|.
T Consensus 171 k~~pl~iss~l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg~~Qi 221 (539)
T 4ain_A 171 VGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQI 221 (539)
T ss_dssp TCCCSCTTGGGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 222222 5555655 56666665555556666676665555444443
No 14
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=30.52 E-value=2.8e+02 Score=24.35 Aligned_cols=95 Identities=14% Similarity=0.193 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhh--c------------
Q 012823 320 SLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANF--V------------ 385 (456)
Q Consensus 320 ~~~~~~~~i~~~i~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~--~------------ 385 (456)
+.+....++........+.|...+-.-.-+..-+.+++. ......+.....+.......+.+ .
T Consensus 59 e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Er---r~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~ 135 (249)
T 4b4a_A 59 EPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHEK---RAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGF 135 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCT---TTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 577788999999999999999998887666544433222 11112223333333333333331 1
Q ss_pred ------C--ChHHHHHhhchh-hhhhHHHhhhhhHHhhhcC
Q 012823 386 ------P--SIWDAFQFTGAT-AAVSVGFIFPAAIALRDTH 417 (456)
Q Consensus 386 ------~--~~~~i~~l~Ga~-~~~~~~filP~~~yl~~~~ 417 (456)
+ ++++-++++-.. ....++|-+|.++++-.+-
T Consensus 136 ~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~ 176 (249)
T 4b4a_A 136 TQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKA 176 (249)
T ss_dssp TTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred hhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 444444443333 2345778899998886443
Done!