BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012824
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
Length = 553
Score = 496 bits (1277), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/444 (55%), Positives = 315/444 (70%), Gaps = 12/444 (2%)
Query: 2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPP 61
L GMF+F L D+ +++ RD +G+ PLYMG+ G ++ ASEMKAL C FP
Sbjct: 117 LQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPA 176
Query: 62 GHIYSSKQGGLRRWYNPPCYS-EQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFXXXXXXX 120
G S+ G +R +Y+ + + + N D LR+A E +V LM+DVP+
Sbjct: 177 GSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGG 236
Query: 121 XXXXXXAAVASRYLA----DSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHE 176
+A+ +Y A D E + W QLHSF +GL GSPDLKAA+EVA++LGT HHE
Sbjct: 237 LDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHE 296
Query: 177 FHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGG 236
HFTVQEG+DA+ +VIYHIETYDVTTIRASTPM+LMSRKIK++G+KMV+SGEGSDE+FGG
Sbjct: 297 IHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGG 356
Query: 237 YLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSID 296
YLYFHKAPN +E H+ET RK+ ALH+YDC RANK+ SAWGVEARVPFLDK+F++ AM I+
Sbjct: 357 YLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRIN 416
Query: 297 PEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKHILYRQKEQFSDGVGYSWIDGLRDHANK 356
P+ KM G++EK ILR F + YLP + +RQKEQFSDGVGYSWID L++ A +
Sbjct: 417 PQDKMCGN--GKMEKHILRECF----EAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQ 470
Query: 357 QVTDAMLANSSFVYPENTPTTKEAYYYRTIFEKFFPKNAARATVPGGPSVACSTAKAVEW 416
QV+D L + F +P NTPT+KEAY YR IFE+ FP +A VPGGPSVACS+AKA+EW
Sbjct: 471 QVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPGGPSVACSSAKAIEW 530
Query: 417 DAAWSKNPDPSGRAALGVHAAAYE 440
D A+ K DPSGR A+GVH +AY+
Sbjct: 531 DEAFKKMDDPSGR-AVGVHQSAYK 553
>pdb|1Q15|A Chain A, Carbapenam Synthetase
pdb|1Q15|B Chain B, Carbapenam Synthetase
pdb|1Q15|C Chain C, Carbapenam Synthetase
pdb|1Q15|D Chain D, Carbapenam Synthetase
pdb|1Q19|A Chain A, Carbapenam Synthetase
pdb|1Q19|B Chain B, Carbapenam Synthetase
pdb|1Q19|C Chain C, Carbapenam Synthetase
pdb|1Q19|D Chain D, Carbapenam Synthetase
Length = 503
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 98/197 (49%), Gaps = 12/197 (6%)
Query: 146 QLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRA 205
+L+++ IG E S + + +++VAD LGT H + E I+ + E IY+ E +D +
Sbjct: 264 KLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEI 323
Query: 206 STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY-FHKAPNKEEFHQETCRKIKALHLYD 264
+ +F + R+ + V +++G GSD +FGG L + N + E + + +
Sbjct: 324 QSGLFNVYRQAQG-QVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTRWTGEF- 381
Query: 265 CLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQP 324
A S +G++ R PF I+ ++ P++K+ ++ K ILR D +
Sbjct: 382 ---ATHGASCYGIDIRHPFWSHSLISLCHALHPDYKIFDNEV----KNILREYADSLQ-- 432
Query: 325 YLPKHILYRQKEQFSDG 341
LPK I++R+K +G
Sbjct: 433 LLPKDIVWRKKIGIHEG 449
>pdb|1JGT|A Chain A, Crystal Structure Of Beta-Lactam Synthetase
pdb|1JGT|B Chain B, Crystal Structure Of Beta-Lactam Synthetase
pdb|1M1Z|A Chain A, Beta-Lactam Synthetase Apo Enzyme
pdb|1M1Z|B Chain B, Beta-Lactam Synthetase Apo Enzyme
pdb|1MB9|A Chain A, Beta-Lactam Synthetase Complexed With Atp
pdb|1MB9|B Chain B, Beta-Lactam Synthetase Complexed With Atp
pdb|1MBZ|A Chain A, Beta-Lactam Synthetase With Trapped Intermediate
pdb|1MBZ|B Chain B, Beta-Lactam Synthetase With Trapped Intermediate
pdb|1MC1|A Chain A, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
pdb|1MC1|B Chain B, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
Length = 513
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/369 (22%), Positives = 141/369 (38%), Gaps = 55/369 (14%)
Query: 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSD--------- 51
+++G F+ V+ T D+ +A D G PLY G + ++E KAL+
Sbjct: 116 LVNGRFATVV-RTGDRVLLAT-DHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPL 172
Query: 52 -DCERFISF------PPGHIYSSKQGG-----LRRWYNPPCYSEQIPSNPYDPLVLRKAF 99
D R P G + G R W P S +I +R A
Sbjct: 173 ADARRVAGLTGVYQVPAGAVMDIDLGSGTAVTHRTWT--PGLSRRILPEGEAVAAVRAAL 230
Query: 100 EKAVVKRLM-TDVPFXXXXXXXXXXXXXAAVASRYLADSEAAC--QWGSQLHSFCIGLEG 156
EKAV +R+ D P ++ + AAC + +L + +G +
Sbjct: 231 EKAVAQRVTPGDTPL-------------VVLSGGIDSSGVAACAHRAAGELDTVSMGTDT 277
Query: 157 SPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKI 216
S + + AR V D+L TRH E E + L ++ E+ D I P+ + R +
Sbjct: 278 SNEFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL 337
Query: 217 KSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWG 276
+ +++G G+D GG + P + L+ + + + W
Sbjct: 338 DG-PERRILTGYGADIPLGGMHREDRLPALDTVLAHDMATFDGLNEMSPVLSTLA-GHWT 395
Query: 277 VEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKHILYRQKE 336
P+ D+E ++ +S++ K GR +KW+LR A D LP + R K
Sbjct: 396 TH---PYWDREVLDLLVSLEAGLKRRH---GR-DKWVLRAAMAD----ALPAETVNRPKL 444
Query: 337 QFSDGVGYS 345
+G G +
Sbjct: 445 GVHEGSGTT 453
>pdb|2WOE|A Chain A, Crystal Structure Of The D97n Variant Of Dinitrogenase
Reductase-Activating Glycohydrolase (Drag) From
Rhodospirillum Rubrum In Complex With Adp-Ribose
pdb|2WOE|B Chain B, Crystal Structure Of The D97n Variant Of Dinitrogenase
Reductase-Activating Glycohydrolase (Drag) From
Rhodospirillum Rubrum In Complex With Adp-Ribose
pdb|2WOE|C Chain C, Crystal Structure Of The D97n Variant Of Dinitrogenase
Reductase-Activating Glycohydrolase (Drag) From
Rhodospirillum Rubrum In Complex With Adp-Ribose
Length = 299
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 137 SEAAC-QWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEG------IDALE 189
S+AAC G +H L G +KA RE A+ L +H +FHF +G +D ++
Sbjct: 168 SDAACLTLGRMVHH----LIGGRGMKACREEANRLVHQHRDFHFEPYKGQSSAYIVDTMQ 223
Query: 190 EVIYH 194
V+++
Sbjct: 224 TVLHY 228
>pdb|2WOC|A Chain A, Crystal Structure Of The Dinitrogenase
Reductase-Activating Glycohydrolase (Drag) From
Rhodospirillum Rubrum
pdb|2WOC|B Chain B, Crystal Structure Of The Dinitrogenase
Reductase-Activating Glycohydrolase (Drag) From
Rhodospirillum Rubrum
pdb|2WOC|C Chain C, Crystal Structure Of The Dinitrogenase
Reductase-Activating Glycohydrolase (Drag) From
Rhodospirillum Rubrum
pdb|2WOD|A Chain A, Crystal Structure Of The Dinitrogenase
Reductase-Activating Glycohydrolase (Drag) From
Rhodospirillum Rubrum In Complex With Adp-Ribsoyllysine
pdb|2WOD|B Chain B, Crystal Structure Of The Dinitrogenase
Reductase-Activating Glycohydrolase (Drag) From
Rhodospirillum Rubrum In Complex With Adp-Ribsoyllysine
Length = 299
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 137 SEAAC-QWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEG------IDALE 189
S+AAC G +H L G +KA RE A+ L +H +FHF +G +D ++
Sbjct: 168 SDAACLTLGRMVHH----LIGGRGMKACREEANRLVHQHRDFHFEPYKGQSSAYIVDTMQ 223
Query: 190 EVIYH 194
V+++
Sbjct: 224 TVLHY 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,432,759
Number of Sequences: 62578
Number of extensions: 595597
Number of successful extensions: 1390
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 6
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)