Query 012824
Match_columns 456
No_of_seqs 369 out of 2409
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:41:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0571 Asparagine synthase (g 100.0 5E-112 1E-116 828.4 32.7 424 1-440 116-541 (543)
2 PLN02549 asparagine synthase ( 100.0 2E-103 4E-108 836.2 42.9 443 1-443 116-558 (578)
3 PTZ00077 asparagine synthetase 100.0 7E-103 2E-107 833.6 40.8 441 1-441 124-570 (586)
4 PRK09431 asnB asparagine synth 100.0 8E-100 2E-104 807.2 37.3 433 1-439 117-554 (554)
5 TIGR03104 trio_amidotrans aspa 100.0 1.4E-70 3.1E-75 589.8 30.2 358 1-390 118-564 (589)
6 TIGR03108 eps_aminotran_1 exos 100.0 4.6E-65 1E-69 553.2 30.5 365 1-396 118-610 (628)
7 TIGR01536 asn_synth_AEB aspara 100.0 1.9E-63 4.1E-68 523.4 30.8 317 1-338 116-467 (467)
8 COG0367 AsnB Asparagine syntha 100.0 3.5E-63 7.6E-68 525.1 25.6 407 1-437 117-540 (542)
9 cd01991 Asn_Synthase_B_C The C 100.0 1.2E-42 2.5E-47 340.0 18.1 227 96-341 1-269 (269)
10 PF00733 Asn_synthase: Asparag 100.0 9.6E-41 2.1E-45 322.3 17.7 225 94-335 1-255 (255)
11 KOG0573 Asparagine synthase [A 100.0 1.1E-30 2.3E-35 258.7 17.7 325 2-342 114-500 (520)
12 cd01910 Wali7 This domain is p 99.8 2.2E-20 4.8E-25 174.3 10.6 85 1-86 124-209 (224)
13 cd01909 betaLS_CarA_N Glutamin 99.8 6.3E-19 1.4E-23 163.7 9.5 75 1-78 100-199 (199)
14 cd00712 AsnB Glutamine amidotr 99.6 9.3E-16 2E-20 145.9 9.3 76 1-77 116-220 (220)
15 cd01996 Alpha_ANH_like_III Thi 99.5 3.1E-13 6.7E-18 121.2 12.1 125 112-249 3-131 (154)
16 TIGR03573 WbuX N-acetyl sugar 99.5 8.9E-13 1.9E-17 133.5 14.5 117 112-240 61-180 (343)
17 PF13537 GATase_7: Glutamine a 99.4 1.5E-13 3.2E-18 119.1 6.0 51 1-51 75-125 (125)
18 cd03766 Gn_AT_II_novel Gn_AT_I 99.2 2.5E-11 5.4E-16 112.0 6.9 61 1-63 118-179 (181)
19 cd00715 GPATase_N Glutamine am 99.1 1.1E-10 2.4E-15 113.4 9.1 70 1-72 153-223 (252)
20 PRK08341 amidophosphoribosyltr 99.1 4.9E-10 1.1E-14 116.5 13.9 116 1-120 154-283 (442)
21 PRK06388 amidophosphoribosyltr 99.1 6.1E-10 1.3E-14 116.6 13.2 116 1-119 171-302 (474)
22 PRK09123 amidophosphoribosyltr 99.1 9.7E-10 2.1E-14 115.5 13.6 105 1-108 174-293 (479)
23 TIGR00268 conserved hypothetic 99.1 3.6E-10 7.8E-15 109.8 9.5 114 105-236 7-123 (252)
24 PF12481 DUF3700: Aluminium in 99.1 3.8E-10 8.2E-15 104.0 8.6 80 1-81 128-208 (228)
25 PRK08525 amidophosphoribosyltr 99.1 1.1E-09 2.5E-14 114.3 12.9 106 1-108 153-273 (445)
26 PRK07631 amidophosphoribosyltr 99.1 3.4E-10 7.4E-15 118.5 8.6 115 1-118 163-293 (475)
27 PRK07847 amidophosphoribosyltr 99.1 3.7E-10 8.1E-15 119.0 8.5 116 1-119 183-313 (510)
28 cd00553 NAD_synthase NAD+ synt 99.0 2.3E-09 5E-14 103.9 13.2 134 92-238 7-147 (248)
29 PRK07272 amidophosphoribosyltr 99.0 3.2E-09 7E-14 111.4 14.6 70 1-72 164-234 (484)
30 cd00714 GFAT Glutamine amidotr 99.0 5.7E-10 1.2E-14 105.8 7.3 62 1-66 152-214 (215)
31 PRK07349 amidophosphoribosyltr 99.0 2.6E-09 5.7E-14 112.4 12.9 116 1-118 188-322 (500)
32 TIGR00552 nadE NAD+ synthetase 99.0 1.2E-09 2.6E-14 106.0 9.1 135 90-238 4-145 (250)
33 PRK14561 hypothetical protein; 99.0 2.5E-09 5.3E-14 99.8 10.4 106 112-233 2-107 (194)
34 PRK06781 amidophosphoribosyltr 99.0 6.8E-09 1.5E-13 108.9 14.5 123 1-129 163-299 (471)
35 cd01907 GlxB Glutamine amidotr 99.0 9.7E-10 2.1E-14 106.5 7.5 63 1-66 182-248 (249)
36 cd00352 Gn_AT_II Glutamine ami 99.0 9.8E-10 2.1E-14 103.8 7.4 65 1-65 155-220 (220)
37 PRK13980 NAD synthetase; Provi 99.0 4.4E-09 9.5E-14 102.9 12.1 134 92-238 14-149 (265)
38 PLN02440 amidophosphoribosyltr 99.0 1.3E-09 2.9E-14 114.7 8.7 68 1-70 153-221 (479)
39 COG1606 ATP-utilizing enzymes 99.0 4.5E-09 9.7E-14 99.2 11.0 111 109-236 16-129 (269)
40 PRK00876 nadE NAD synthetase; 98.9 2.7E-09 5.8E-14 106.7 8.8 82 89-181 13-98 (326)
41 TIGR01134 purF amidophosphorib 98.9 3.5E-09 7.5E-14 110.7 9.0 116 1-119 154-284 (442)
42 cd01990 Alpha_ANH_like_I This 98.9 8.1E-09 1.8E-13 96.8 10.1 109 113-237 1-112 (202)
43 PRK00331 glucosamine--fructose 98.9 5.1E-09 1.1E-13 114.1 9.0 68 1-72 153-221 (604)
44 PRK05793 amidophosphoribosyltr 98.9 4.8E-09 1E-13 110.3 8.3 69 1-72 168-237 (469)
45 PRK09246 amidophosphoribosyltr 98.9 4.4E-09 9.4E-14 111.5 7.5 68 1-69 162-233 (501)
46 PRK00143 mnmA tRNA-specific 2- 98.8 2E-08 4.3E-13 101.9 10.7 112 112-234 2-130 (346)
47 TIGR01135 glmS glucosamine--fr 98.8 1E-08 2.3E-13 111.8 8.3 68 1-72 152-220 (607)
48 cd01998 tRNA_Me_trans tRNA met 98.8 4.3E-08 9.4E-13 99.6 11.5 112 112-234 1-127 (349)
49 cd01993 Alpha_ANH_like_II This 98.8 5.4E-08 1.2E-12 89.5 10.5 116 112-235 1-121 (185)
50 PF06508 QueC: Queuosine biosy 98.7 1.8E-07 3.8E-12 88.3 13.4 156 113-296 2-174 (209)
51 PRK11106 queuosine biosynthesi 98.7 5.7E-08 1.2E-12 92.8 9.9 146 112-285 3-162 (231)
52 COG0482 TrmU Predicted tRNA(5- 98.7 6.9E-08 1.5E-12 96.5 10.2 110 110-231 3-127 (356)
53 PTZ00323 NAD+ synthase; Provis 98.7 2.2E-07 4.7E-12 91.8 13.5 139 95-239 29-181 (294)
54 PRK04527 argininosuccinate syn 98.7 9.4E-08 2E-12 97.6 11.0 109 110-229 2-118 (400)
55 PRK14665 mnmA tRNA-specific 2- 98.7 8.2E-08 1.8E-12 97.6 10.1 112 108-231 3-124 (360)
56 PF03054 tRNA_Me_trans: tRNA m 98.7 3.1E-08 6.7E-13 100.1 6.1 113 112-235 2-131 (356)
57 COG0603 Predicted PP-loop supe 98.6 5.6E-08 1.2E-12 91.0 7.0 146 112-285 4-163 (222)
58 PTZ00295 glucosamine-fructose- 98.6 6.1E-08 1.3E-12 106.3 8.1 72 1-76 183-255 (640)
59 PF02540 NAD_synthase: NAD syn 98.6 2.3E-07 5E-12 89.5 10.7 134 93-239 3-139 (242)
60 PRK13981 NAD synthetase; Provi 98.6 4.3E-07 9.3E-12 97.8 12.8 138 92-240 260-406 (540)
61 TIGR00420 trmU tRNA (5-methyla 98.6 2.9E-07 6.3E-12 93.5 10.8 108 112-230 2-127 (352)
62 PRK14664 tRNA-specific 2-thiou 98.6 4.4E-07 9.5E-12 92.2 11.9 112 110-232 5-120 (362)
63 PRK00509 argininosuccinate syn 98.5 3.8E-07 8.3E-12 93.5 10.4 109 112-230 4-119 (399)
64 TIGR00884 guaA_Cterm GMP synth 98.5 5.2E-07 1.1E-11 90.1 11.0 109 111-233 17-130 (311)
65 TIGR00364 exsB protein. This p 98.5 3E-07 6.4E-12 86.3 8.2 153 114-294 2-170 (201)
66 cd01712 ThiI ThiI is required 98.5 6.9E-07 1.5E-11 82.0 10.5 108 112-232 1-115 (177)
67 PRK00768 nadE NAD synthetase; 98.5 1.2E-06 2.6E-11 85.2 11.8 139 97-239 23-170 (268)
68 PRK08349 hypothetical protein; 98.5 1E-06 2.2E-11 82.5 10.4 110 112-233 2-118 (198)
69 PRK00919 GMP synthase subunit 98.5 1.1E-06 2.3E-11 87.5 10.8 123 95-233 7-132 (307)
70 PRK13820 argininosuccinate syn 98.4 1.2E-06 2.5E-11 89.9 10.7 111 111-231 3-120 (394)
71 TIGR02432 lysidine_TilS_N tRNA 98.4 2.9E-06 6.4E-11 78.5 11.3 108 112-234 1-113 (189)
72 PLN00200 argininosuccinate syn 98.4 1.6E-06 3.4E-11 89.1 10.3 111 111-230 6-123 (404)
73 cd01999 Argininosuccinate_Synt 98.4 1.9E-06 4.1E-11 88.3 10.7 108 113-230 1-116 (385)
74 PRK10696 tRNA 2-thiocytidine b 98.3 6.3E-06 1.4E-10 80.4 12.3 131 93-234 10-145 (258)
75 PRK00074 guaA GMP synthase; Re 98.3 3E-06 6.5E-11 90.4 10.7 125 94-233 200-329 (511)
76 cd01986 Alpha_ANH_like Adenine 98.3 3.1E-06 6.8E-11 70.5 8.2 76 113-235 1-76 (103)
77 COG0037 MesJ tRNA(Ile)-lysidin 98.3 4.2E-06 9.1E-11 83.1 10.2 125 94-234 5-134 (298)
78 cd01997 GMP_synthase_C The C-t 98.3 3E-06 6.5E-11 84.0 8.5 108 112-233 1-113 (295)
79 cd00713 GltS Glutamine amidotr 98.2 3.5E-06 7.5E-11 86.5 8.6 66 2-69 326-394 (413)
80 cd01992 PP-ATPase N-terminal d 98.2 8.3E-06 1.8E-10 75.1 10.2 104 112-233 1-109 (185)
81 TIGR00032 argG argininosuccina 98.2 6.3E-06 1.4E-10 84.7 9.6 105 112-230 1-116 (394)
82 PLN02347 GMP synthetase 98.2 6.8E-06 1.5E-10 87.8 10.2 79 101-189 220-301 (536)
83 PRK01565 thiamine biosynthesis 98.2 6.9E-06 1.5E-10 84.9 9.9 110 109-234 175-293 (394)
84 PF01171 ATP_bind_3: PP-loop f 98.2 8.1E-06 1.8E-10 75.3 9.0 104 112-233 1-109 (182)
85 KOG2805 tRNA (5-methylaminomet 98.1 1E-05 2.2E-10 78.4 9.2 117 111-238 6-139 (377)
86 PRK02628 nadE NAD synthetase; 98.1 2.3E-05 4.9E-10 86.6 13.2 144 92-241 341-495 (679)
87 cd01995 ExsB ExsB is a transcr 98.1 1.4E-05 2.9E-10 72.7 9.3 87 112-233 1-89 (169)
88 PRK08384 thiamine biosynthesis 98.1 2.6E-05 5.7E-10 79.9 10.8 110 109-233 179-297 (381)
89 COG2117 Predicted subunit of t 98.0 1.4E-05 3E-10 70.6 7.1 62 112-183 2-63 (198)
90 TIGR00342 thiazole biosynthesi 98.0 2.6E-05 5.7E-10 80.0 10.4 111 109-233 171-288 (371)
91 cd01994 Alpha_ANH_like_IV This 98.0 3.3E-05 7.2E-10 72.0 9.4 92 112-232 1-100 (194)
92 COG1365 Predicted ATPase (PP-l 98.0 3.3E-05 7.2E-10 71.2 8.9 123 94-238 34-169 (255)
93 cd01713 PAPS_reductase This do 98.0 3.4E-05 7.3E-10 69.3 9.0 115 112-235 1-120 (173)
94 PTZ00394 glucosamine-fructose- 98.0 1.9E-05 4.1E-10 86.9 8.5 73 1-77 187-280 (670)
95 TIGR03679 arCOG00187 arCOG0018 98.0 3.6E-05 7.8E-10 73.2 9.3 89 115-232 2-98 (218)
96 COG0171 NadE NAD synthase [Coe 97.9 0.00019 4.1E-09 69.9 13.4 139 94-239 7-155 (268)
97 PRK05370 argininosuccinate syn 97.9 6.4E-05 1.4E-09 77.3 10.4 117 105-233 6-138 (447)
98 PF00764 Arginosuc_synth: Argi 97.9 4.9E-05 1.1E-09 77.6 9.4 109 115-233 2-121 (388)
99 PRK05253 sulfate adenylyltrans 97.9 0.00015 3.3E-09 72.1 12.7 109 111-233 28-140 (301)
100 PLN02981 glucosamine:fructose- 97.9 3.3E-05 7.1E-10 85.3 8.2 69 1-72 181-273 (680)
101 PRK01269 tRNA s(4)U8 sulfurtra 97.8 9.1E-05 2E-09 78.7 10.2 111 110-234 177-294 (482)
102 COG0034 PurF Glutamine phospho 97.8 7.8E-05 1.7E-09 76.3 8.4 65 1-67 160-225 (470)
103 PRK08576 hypothetical protein; 97.8 0.0002 4.4E-09 74.5 11.7 121 95-232 217-342 (438)
104 PLN02339 NAD+ synthase (glutam 97.7 0.00039 8.3E-09 77.0 13.4 89 93-181 329-449 (700)
105 PF02568 ThiI: Thiamine biosyn 97.7 8.4E-05 1.8E-09 69.2 6.7 110 110-233 3-121 (197)
106 PRK10660 tilS tRNA(Ile)-lysidi 97.6 0.00033 7.2E-09 73.4 10.8 76 101-181 6-85 (436)
107 COG0137 ArgG Argininosuccinate 97.6 0.0004 8.7E-09 69.8 10.7 114 110-233 4-128 (403)
108 KOG0572 Glutamine phosphoribos 97.6 0.00017 3.7E-09 71.8 7.7 68 1-70 163-235 (474)
109 COG0367 AsnB Asparagine syntha 97.6 6.2E-05 1.3E-09 80.9 4.7 90 270-371 419-510 (542)
110 TIGR02039 CysD sulfate adenyly 97.1 0.0031 6.6E-08 62.5 10.4 121 95-233 8-132 (294)
111 PRK11750 gltB glutamate syntha 97.1 0.0015 3.2E-08 76.0 8.2 65 2-68 336-403 (1485)
112 PRK02090 phosphoadenosine phos 97.0 0.003 6.5E-08 61.0 9.2 60 111-180 41-102 (241)
113 COG0519 GuaA GMP synthase, PP- 96.9 0.0059 1.3E-07 58.9 9.6 76 93-178 5-83 (315)
114 PRK08557 hypothetical protein; 96.8 0.016 3.4E-07 60.4 12.8 58 111-178 182-241 (417)
115 cd01908 YafJ Glutamine amidotr 96.7 0.0066 1.4E-07 59.1 8.2 60 4-69 180-256 (257)
116 PF01507 PAPS_reduct: Phosphoa 96.6 0.006 1.3E-07 55.1 7.3 106 112-234 1-113 (174)
117 TIGR03442 conserved hypothetic 96.5 0.008 1.7E-07 58.4 7.9 59 6-73 189-247 (251)
118 PRK12563 sulfate adenylyltrans 96.5 0.016 3.5E-07 57.7 10.0 107 112-232 39-149 (312)
119 PRK13794 hypothetical protein; 96.4 0.027 5.8E-07 59.8 11.4 60 110-178 247-308 (479)
120 PRK13795 hypothetical protein; 96.3 0.015 3.2E-07 64.0 9.2 61 110-180 243-305 (636)
121 TIGR00289 conserved hypothetic 96.2 0.036 7.8E-07 52.7 10.2 60 112-181 2-68 (222)
122 COG0301 ThiI Thiamine biosynth 96.2 0.025 5.4E-07 57.8 9.5 112 109-232 174-291 (383)
123 cd01984 AANH_like Adenine nucl 95.9 0.021 4.6E-07 45.4 6.0 21 113-133 1-21 (86)
124 KOG1706 Argininosuccinate synt 95.8 0.023 5E-07 55.5 6.8 120 111-244 6-138 (412)
125 TIGR00434 cysH phosophoadenyly 95.7 0.092 2E-06 49.5 10.5 58 111-178 14-73 (212)
126 KOG1622 GMP synthase [Nucleoti 94.8 0.11 2.5E-06 53.3 8.2 72 102-182 223-296 (552)
127 TIGR02057 PAPS_reductase phosp 94.8 0.36 7.9E-06 46.1 11.3 64 110-182 25-90 (226)
128 PF09147 DUF1933: Domain of un 94.7 0.12 2.7E-06 46.6 7.1 62 3-67 99-186 (201)
129 COG0175 CysH 3'-phosphoadenosi 94.6 0.31 6.6E-06 47.7 10.5 60 110-179 39-100 (261)
130 TIGR03183 DNA_S_dndC putative 94.6 0.31 6.7E-06 51.1 11.0 122 109-233 12-151 (447)
131 COG3969 Predicted phosphoadeno 94.5 0.16 3.4E-06 50.7 8.1 55 109-168 26-82 (407)
132 PRK06850 hypothetical protein; 94.5 0.49 1.1E-05 50.4 12.4 134 98-234 21-173 (507)
133 COG0449 GlmS Glucosamine 6-pho 94.2 0.16 3.4E-06 54.8 8.0 68 1-72 150-218 (597)
134 KOG2303 Predicted NAD synthase 92.9 0.6 1.3E-05 48.7 9.3 126 112-239 351-527 (706)
135 COG2102 Predicted ATPases of P 92.6 0.91 2E-05 42.9 9.4 73 112-194 2-84 (223)
136 PF01902 ATP_bind_4: ATP-bindi 91.5 0.44 9.5E-06 45.3 6.1 58 112-180 2-67 (218)
137 TIGR00290 MJ0570_dom MJ0570-re 91.4 1.5 3.2E-05 41.8 9.6 57 113-179 3-66 (223)
138 PF13230 GATase_4: Glutamine a 64.1 13 0.00029 36.4 5.5 64 4-72 170-253 (271)
139 KOG0053 Cystathionine beta-lya 62.4 85 0.0018 32.7 10.9 123 96-237 79-204 (409)
140 TIGR02055 APS_reductase thiore 59.7 21 0.00046 33.0 5.7 50 120-179 2-53 (191)
141 PLN02309 5'-adenylylsulfate re 56.3 55 0.0012 34.7 8.7 57 111-178 111-169 (457)
142 TIGR00424 APS_reduc 5'-adenyly 46.6 94 0.002 33.1 8.6 57 111-178 116-174 (463)
143 COG0626 MetC Cystathionine bet 40.4 1.4E+02 0.003 31.1 8.5 116 97-226 66-185 (396)
144 PF08057 Ery_res_leader2: Eryt 39.1 16 0.00034 18.5 0.7 13 273-285 1-13 (14)
145 COG1856 Uncharacterized homolo 36.5 28 0.0006 33.2 2.5 59 110-178 54-117 (275)
146 PRK05613 O-acetylhomoserine am 33.5 1.3E+02 0.0029 31.5 7.4 103 112-228 85-193 (437)
147 KOG2840 Uncharacterized conser 32.7 2.1E+02 0.0044 29.0 7.9 65 110-178 51-119 (347)
148 PRK08574 cystathionine gamma-s 32.5 1.8E+02 0.0039 29.9 8.0 58 168-227 113-174 (385)
149 PF13519 VWA_2: von Willebrand 31.4 1.6E+02 0.0034 25.3 6.5 86 94-189 81-170 (172)
150 PRK05968 hypothetical protein; 30.4 3.4E+02 0.0074 27.9 9.7 119 98-231 67-188 (389)
151 PF01053 Cys_Met_Meta_PP: Cys/ 29.6 1.5E+02 0.0033 30.6 6.9 116 96-228 57-179 (386)
152 PRK08247 cystathionine gamma-s 29.0 3.8E+02 0.0082 27.2 9.7 116 97-227 55-173 (366)
153 cd00614 CGS_like CGS_like: Cys 28.3 3E+02 0.0066 27.9 8.8 115 97-228 43-163 (369)
154 cd01455 vWA_F11C1-5a_type Von 28.1 1.9E+02 0.0041 26.9 6.5 26 97-122 95-123 (191)
155 PRK05967 cystathionine beta-ly 27.1 3.2E+02 0.007 28.3 8.8 102 112-228 80-187 (395)
156 TIGR01328 met_gam_lyase methio 26.6 3.7E+02 0.0081 27.6 9.2 118 99-230 64-184 (391)
157 PRK12342 hypothetical protein; 26.2 1.5E+02 0.0033 28.8 5.8 56 114-175 81-140 (254)
158 TIGR01329 cysta_beta_ly_E cyst 25.6 3.8E+02 0.0081 27.4 9.0 117 97-228 50-169 (378)
159 PRK08776 cystathionine gamma-s 25.6 2.9E+02 0.0062 28.7 8.1 117 98-229 64-184 (405)
160 COG1435 Tdk Thymidine kinase [ 24.6 1.6E+02 0.0035 27.5 5.3 30 209-238 99-131 (201)
161 cd01453 vWA_transcription_fact 24.2 3.3E+02 0.0072 24.7 7.4 73 94-177 87-165 (183)
162 TIGR03301 PhnW-AepZ 2-aminoeth 24.0 5.7E+02 0.012 25.1 9.8 120 94-227 31-162 (355)
163 PRK08114 cystathionine beta-ly 23.2 2.9E+02 0.0063 28.6 7.6 105 111-228 77-187 (395)
164 PF05728 UPF0227: Uncharacteri 23.1 2.3E+02 0.005 26.1 6.1 76 150-225 4-86 (187)
165 PRK07582 cystathionine gamma-l 22.8 2E+02 0.0043 29.3 6.3 102 113-228 67-170 (366)
166 TIGR03436 acidobact_VWFA VWFA- 22.6 4.3E+02 0.0093 25.7 8.5 73 110-193 164-252 (296)
167 COG0067 GltB Glutamate synthas 22.5 76 0.0016 32.6 3.0 65 2-71 297-362 (371)
168 PRK10886 DnaA initiator-associ 22.4 6.3E+02 0.014 23.4 11.4 25 209-233 125-150 (196)
169 COG0474 MgtA Cation transport 22.4 2.2E+02 0.0048 33.1 7.1 75 158-233 572-651 (917)
170 COG1066 Sms Predicted ATP-depe 22.2 3.9E+02 0.0084 28.1 8.0 96 122-230 106-220 (456)
171 COG0041 PurE Phosphoribosylcar 22.2 2.6E+02 0.0057 25.1 5.9 29 209-237 46-74 (162)
172 PRK08064 cystathionine beta-ly 22.1 4.3E+02 0.0093 27.1 8.6 99 114-228 72-176 (390)
173 PRK03359 putative electron tra 21.9 2.5E+02 0.0055 27.3 6.4 63 107-177 79-145 (256)
174 PRK08248 O-acetylhomoserine am 21.2 3E+02 0.0066 28.8 7.4 115 98-227 68-186 (431)
175 PF02677 DUF208: Uncharacteriz 20.6 6.6E+02 0.014 23.0 9.1 90 120-223 8-107 (176)
176 KOG0399 Glutamate synthase [Am 20.5 1.7E+02 0.0036 34.9 5.2 53 16-68 422-477 (2142)
177 PRK06767 methionine gamma-lyas 20.4 4.7E+02 0.01 26.7 8.5 68 161-229 115-185 (386)
178 PLN02360 probable 6-phosphoglu 20.3 88 0.0019 30.5 2.9 33 89-121 20-52 (268)
No 1
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-112 Score=828.39 Aligned_cols=424 Identities=70% Similarity=1.165 Sum_probs=400.6
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeEEEeeCCCC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPC 80 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~~~y~~~~~ 80 (456)
.|+|||||+++|.+.++++++||++|++||||+++.+++++||||+|+|.+.|+.|..+||||++..+.+.+.||++|.|
T Consensus 116 ~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C~~i~~fpPgh~y~~~~~~~~r~f~p~w 195 (543)
T KOG0571|consen 116 MLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDCEKIESFPPGHYYTSKTGKLTRYFNPEW 195 (543)
T ss_pred HhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhhhhceeecCCcceeecccccccCCCCchh
Confidence 48999999999999999999999999999999999889999999999999999999999999999998888999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchH
Q 012824 81 YSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDL 160 (456)
Q Consensus 81 ~~~~~~~~~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~ 160 (456)
.....++.+.....+|+.|++||++|||+|+|+||+||||||||+||+++++.+++.+. +.+.++++|+||+++++|+
T Consensus 196 ~~~~~~s~p~d~~~~r~~~~~aV~KRLM~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~--~~~~~lhsFaIGle~SPDL 273 (543)
T KOG0571|consen 196 FDENIPSTPLDYLALRHTLEKAVRKRLMTDVPFGVLLSGGLDSSLVASIAARELKKAQA--ARGSKLHSFAIGLEDSPDL 273 (543)
T ss_pred hhccCCCCcccHHHHHHHHHHHHHHHhhccCceeEEeeCCchHHHHHHHHHHHHHHhhh--hcCCCceEEEecCCCChhH
Confidence 87766766666778999999999999999999999999999999999999998865322 2256899999999999999
Q ss_pred HHHHHHHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCccc
Q 012824 161 KAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (456)
Q Consensus 161 ~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~ 240 (456)
..|++||+++|+.||++.++.++.+++|+++|+++|+||.++||++++||+++++++++|++|||||+|+||+||||.||
T Consensus 274 ~aarkVAd~igt~Hhe~~ft~qegidal~eVI~hLETYDvttIRastpmyLlsr~Ikk~gvkmvlSGEGsDEifggYlYf 353 (543)
T KOG0571|consen 274 LAARKVADFIGTIHHEHTFTIQEGIDALDEVIYHLETYDVTTIRASTPMYLLSRKIKKLGVKMVLSGEGSDEIFGGYLYF 353 (543)
T ss_pred HHHHHHHHHhCCcceEEEEcHHHHHHHHHHHheeeeccccceEecCCchHHHHHHHHhcceEEEEecCCchhhhcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhchhhhhhhhccccccCCceecCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHHHhccc
Q 012824 241 HKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDD 320 (456)
Q Consensus 241 ~~~p~~~~~~~e~~~~~~~l~~~dllr~dr~~~a~gle~r~PflD~~lve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~ 320 (456)
+++|+.++|++|+.++++.||.+||||+|+++|+||+|+|+||||++|+++|++|||++|+.....++++||+||+||..
T Consensus 354 h~APs~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFLDk~F~~~~~sldPe~K~~k~~~~r~eK~vlrsafd~ 433 (543)
T KOG0571|consen 354 HKAPSAEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFLDKRFLELAMSLDPEEKMIKPKEGRIEKYVLRSAFDT 433 (543)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHhhcCccccccceeeecccccHHHHHHHhcCChhHhcCCcchhhHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999998755578999999999999
Q ss_pred CCCCCCChhhhhccccCCCCCCchhhhHHHHHHHHHhcChHHHhcCCCCCCCCCCchhhHhHHHHHHHHHCCCccccccc
Q 012824 321 DKQPYLPKHILYRQKEQFSDGVGYSWIDGLRDHANKQVTDAMLANSSFVYPENTPTTKEAYYYRTIFEKFFPKNAARATV 400 (456)
Q Consensus 321 ~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~~~p~~ke~~~~~~~~~~~~~~~~~~~~~ 400 (456)
.+.|+||++|+||+|++|++++|++|+++|+++++..++|.++++++..+|+++|.|||+||||+||+++||++.+..++
T Consensus 434 ~~~pyLP~eilwrqkeqfsdgVgySwid~L~d~~e~~isd~m~a~a~~~fp~ntP~TkEayyYR~iFe~~fp~~~~a~~v 513 (543)
T KOG0571|consen 434 TEKPYLPDEILWRQKEQFSDGVGYSWIDGLKDHAEKQISDAMFANAAAEFPDNTPTTKEAYYYRQIFERFFPQKTAADTV 513 (543)
T ss_pred cCCCcChHHHHHHHHhhhccccchHHHHHHHHHHHHhcCHHHHhChHhhCCCCCCCchhHHHHHHHHHHHCCcchhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986554443
Q ss_pred cCCcccccchhhhhhhhh--hhcCCCCCCchhhhHHhHHhhh
Q 012824 401 PGGPSVACSTAKAVEWDA--AWSKNPDPSGRAALGVHAAAYE 440 (456)
Q Consensus 401 ~~~~~~~~~~~~~~~w~~--~~~~~~~~~~r~~~~~~~~~~~ 440 (456)
.+|+| +|.++.|||||++. ||..++.
T Consensus 514 -------------~~wvp~a~W~~~~Dpsgr~~~-~h~~~~~ 541 (543)
T KOG0571|consen 514 -------------HKWVPKAKWGCAEDPSGRAAL-VHEKAAV 541 (543)
T ss_pred -------------HhhcchhhccCCCCccchhHH-HHHhhhc
Confidence 37999 99999999999876 9998864
No 2
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=1.8e-103 Score=836.16 Aligned_cols=443 Identities=86% Similarity=1.415 Sum_probs=403.6
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeEEEeeCCCC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPC 80 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~~~y~~~~~ 80 (456)
+|+|||||+|||.++++++++|||+|+|||||++..++.++||||+|+|+..|++|++|||||++.++.+++++||++.|
T Consensus 116 ~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~~~~~I~~lpPGh~l~~~~~~~~~y~~~~~ 195 (578)
T PLN02549 116 MLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDDCERFEEFPPGHYYSSKAGGFRRWYNPPW 195 (578)
T ss_pred hCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHHHhCCEEEeCCCeEEEEcCCCEEEEEeccc
Confidence 58999999999999999999999999999999886567899999999999999999999999999887667889999877
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchH
Q 012824 81 YSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDL 160 (456)
Q Consensus 81 ~~~~~~~~~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~ 160 (456)
.....++.++..+.|+++|++||++||++|+|+|++||||||||+|++++++..++......|+.+++|||+|+++++|.
T Consensus 196 ~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~ 275 (578)
T PLN02549 196 FSESIPSTPYDPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFCVGLEGSPDL 275 (578)
T ss_pred CccccCCchhHHHHHHHHHHHHHHHHhccCCceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEecCCCCCCHH
Confidence 54333444566889999999999999999999999999999999999999987543210001224799999999999999
Q ss_pred HHHHHHHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCccc
Q 012824 161 KAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (456)
Q Consensus 161 ~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~ 240 (456)
.+|++||+++|++||++.++.+++++.++++++++|+++.+++++++++|++++.+++.|++|+|||+||||+||||.+|
T Consensus 276 ~~Ar~vA~~lg~~h~ev~~~~~e~~~~l~~~i~~le~~dp~~~~~s~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~ 355 (578)
T PLN02549 276 KAAREVADYLGTVHHEFHFTVQEGIDAIEDVIYHLETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYF 355 (578)
T ss_pred HHHHHHHHHhCCCCeEEEEChHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhcCCEEEEecCchHhhhcChHhh
Confidence 99999999999999999999999999999999999998887888899999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhchhhhhhhhccccccCCceecCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHHHhccc
Q 012824 241 HKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDD 320 (456)
Q Consensus 241 ~~~p~~~~~~~e~~~~~~~l~~~dllr~dr~~~a~gle~r~PflD~~lve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~ 320 (456)
+.+|+..+|+.|+.++++.+|.++++|.||++|+||+|+|+||||++||+++++||+++|+.++.+++.+|||||+||++
T Consensus 356 ~~ap~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~~v~~a~~ip~~~k~~~~~~~~~eK~iLR~a~~~ 435 (578)
T PLN02549 356 HKAPNKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLDKEFIDVAMSIDPEWKMIRPGEGRIEKWVLRKAFDD 435 (578)
T ss_pred hhCCCHHHHHHHHHHHHHHHhhhhccccchhhhhcCceEECCcCCHHHHHHHHhCCHHHHhcCCCCCCCchHHHHHHHhh
Confidence 98888777888998898889999999999999999999999999999999999999999997522235799999999986
Q ss_pred CCCCCCChhhhhccccCCCCCCchhhhHHHHHHHHHhcChHHHhcCCCCCCCCCCchhhHhHHHHHHHHHCCCccccccc
Q 012824 321 DKQPYLPKHILYRQKEQFSDGVGYSWIDGLRDHANKQVTDAMLANSSFVYPENTPTTKEAYYYRTIFEKFFPKNAARATV 400 (456)
Q Consensus 321 ~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~~~p~~ke~~~~~~~~~~~~~~~~~~~~~ 400 (456)
...++||++|+||+|+||++|+++.|++.|++++++.++|++|+++...+|.++|.|||+||||+||++|||++++..++
T Consensus 436 ~~~~~LP~~Il~R~K~~f~~~~g~~w~~~l~~~~~~~~~d~~~~~~~~~~~~~~p~tke~~~yr~if~~~~p~~~~~~~~ 515 (578)
T PLN02549 436 EEDPYLPKHILWRQKEQFSDGVGYSWIDGLKAHAEKHVSDEMFANASFRYPHNTPTTKEAYYYRMIFEKHFPQDAARLTV 515 (578)
T ss_pred cCcccCCHHHhCCCccCCCCCCcchHHHHHHHHHHHHcCHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHCCCcchhhhc
Confidence 33348999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccchhhhhhhhhhhcCCCCCCchhhhHHhHHhhhhhc
Q 012824 401 PGGPSVACSTAKAVEWDAAWSKNPDPSGRAALGVHAAAYEEAV 443 (456)
Q Consensus 401 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~~~ 443 (456)
||+++|+||+.++.+|+|+|.++.|||||++.+||.+++.+..
T Consensus 516 ~~~~~~~~~~~~~~~w~~~~~~~~dps~r~~~~~~~~~~~~~~ 558 (578)
T PLN02549 516 PGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHVAAYEEDV 558 (578)
T ss_pred CCCcccccchhHHHHHHHhhCCCCCcchhhHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999996643
No 3
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=7.4e-103 Score=833.63 Aligned_cols=441 Identities=62% Similarity=1.070 Sum_probs=400.3
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecC--CeEEEeeCC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQ--GGLRRWYNP 78 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~--~~~~~y~~~ 78 (456)
+|+|||||+|||.++++++++|||+|+|||||++..+|.++||||+|+|...|++|++|||||++.++. .++++||+|
T Consensus 124 ~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~~~~~~~~y~~~ 203 (586)
T PTZ00077 124 HLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKALHDQCVEVKQFPPGHYYDQTKEKGEFVRYYNP 203 (586)
T ss_pred hcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecHHHHHHhcCCEEEeCCCcEEEecCCcceeEEecCC
Confidence 589999999999999999999999999999998754678999999999999999999999999998864 467899998
Q ss_pred CCCCC--CCCCCCCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhh--hhhhcCCcccceeccC
Q 012824 79 PCYSE--QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSE--AACQWGSQLHSFCIGL 154 (456)
Q Consensus 79 ~~~~~--~~~~~~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~--~~~~~~~~l~tfsig~ 154 (456)
.|... ..++.++.+++++++|++||++||++|+|+|++||||||||+|++++++...+.. ..+.+..+++|||+|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~ 283 (586)
T PTZ00077 204 NWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGL 283 (586)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCC
Confidence 77532 2334455678999999999999999999999999999999999999998753210 0001124699999999
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhc
Q 012824 155 EGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 155 ~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
++++|..+|++||+++|++||++.++.+++++.++++++++|+|+.+++++++++|++++.+++.|++|+|||+||||||
T Consensus 284 ~~~~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~i~~le~~~~~~~~~~~p~yll~r~a~~~gvkVvLsGeGaDElF 363 (586)
T PTZ00077 284 EGSPDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDVIYHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSDELF 363 (586)
T ss_pred CCCchHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcCCeEEEecCchhhhc
Confidence 99999999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred cCCccccCCCChHHHHHHHHHHHHhchhhhhhhhccccccCCceecCCCCCHHHHHHHhcCCccccccCCCCCCcchHHH
Q 012824 235 GGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWIL 314 (456)
Q Consensus 235 gGy~~~~~~p~~~~~~~e~~~~~~~l~~~dllr~dr~~~a~gle~r~PflD~~lve~a~slP~~~k~~~~~~~~~~K~lL 314 (456)
|||.+|+.+|+..+|+.|+.+++++++.+|++|+||++|+||+|+|+||||++||+++++||+++|+.+..+++.+||||
T Consensus 364 gGY~~~~~ap~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~~v~~a~~ip~~~K~~~~~~~~~~K~iL 443 (586)
T PTZ00077 364 GGYLYFHKAPNREEFHRELVRKLHDLHKYDCLRANKATMAWGIEARVPFLDKDFLEYVMNIDPKYKMCNAFEGQMEKYIL 443 (586)
T ss_pred cCcHhhhhCcchHHHHHHHHHHHHHHhccCCchhhHHHHhcCceeecCcCCHHHHHHHHhCCHHHhcCCCCCCCCCHHHH
Confidence 99999988887777888887788899999999999999999999999999999999999999999997532235789999
Q ss_pred HHhcccCCCCCCChhhhhccccCCCCCCchhhhHHHHHHHHHhcChHHHhcCCCCCCCCCCchhhHhHHHHHHHHHCCCc
Q 012824 315 RNAFDDDKQPYLPKHILYRQKEQFSDGVGYSWIDGLRDHANKQVTDAMLANSSFVYPENTPTTKEAYYYRTIFEKFFPKN 394 (456)
Q Consensus 315 R~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~~~p~~ke~~~~~~~~~~~~~~~ 394 (456)
|+||++..+++||++|+||+|+||++|+++.|++.+++++++.++|+.++++...+|.++|.|||+||||+||++|||++
T Consensus 444 R~a~~~~~~~~LP~~I~~R~K~~F~~~~g~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~tke~~~yr~if~~~~p~~ 523 (586)
T PTZ00077 444 RKAFEGLEKPYLPDEILWRQKEQFSDGVGYSWIDGLKEYAEKKISDQEFSQASFLFPYNTPRTKEAYLYRQIFSKHFPSD 523 (586)
T ss_pred HHHHhccCcCcCCHHHhCCcccCCCCCCchhHHHHHHHHHHHHhChHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHCCch
Confidence 99999633348999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcccccchhhhhhhhhhhcCCCCCCchhhhHHhHHhhhh
Q 012824 395 AARATVPGGPSVACSTAKAVEWDAAWSKNPDPSGRAALGVHAAAYEE 441 (456)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~ 441 (456)
+++.+|++|+||+||++.+.+|+++|.++.|||||++.+||.+++++
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~dps~r~~~~~~~~~~~~ 570 (586)
T PTZ00077 524 SAALTVPYGPSIACSTEKALEWDESFKKNTDESGRAVLSVHNDAKQD 570 (586)
T ss_pred hheeecCCCcccccccHHHHHHHHHhcCCCCcchhHHHHHHHHHhhh
Confidence 99999999999999999888999999999999999999999999965
No 4
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=8.2e-100 Score=807.18 Aligned_cols=433 Identities=64% Similarity=1.073 Sum_probs=395.1
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeEEEeeCCCC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPC 80 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~~~y~~~~~ 80 (456)
+|+|||||+|||.++++++++|||+|+|||||++..++.++||||+|+|+..|++|++|||||++.+.+++..+||++.|
T Consensus 117 ~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~g~~~~y~~~~~ 196 (554)
T PRK09431 117 DLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVCKTIKEFPPGHYYWSKDGEFVRYYQRDW 196 (554)
T ss_pred hCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHHhcCCEEEECCCeEEEECCCcEEEecCCCc
Confidence 58999999999999999999999999999999987448899999999999999999999999999887667889999876
Q ss_pred CCC-CCCCCCCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhh----hhhcCCcccceeccCC
Q 012824 81 YSE-QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEA----ACQWGSQLHSFCIGLE 155 (456)
Q Consensus 81 ~~~-~~~~~~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~----~~~~~~~l~tfsig~~ 155 (456)
... ..++.++.+++++++|++||++||++|+|+|++||||||||+||+++++...+.+. ...|+.+++|||+|++
T Consensus 197 ~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~ 276 (554)
T PRK09431 197 FDYDAVKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE 276 (554)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC
Confidence 432 22344566889999999999999999999999999999999999999987532110 0022246999999999
Q ss_pred CCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhcc
Q 012824 156 GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (456)
Q Consensus 156 ~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfg 235 (456)
+++|..+|++||+++|++||++.++.+++++.++++++++|+++++++++++++|++++.+++.|++|+|||+|||||||
T Consensus 277 ~~~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~dp~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDElFg 356 (554)
T PRK09431 277 GSPDLKAAREVADHLGTVHHEIHFTVQEGLDALRDVIYHLETYDVTTIRASTPMYLMARKIKAMGIKMVLSGEGADELFG 356 (554)
T ss_pred CCChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHcCCEEEEecCchhhhhc
Confidence 99999999999999999999999999999999999999999998888889999999999988889999999999999999
Q ss_pred CCccccCCCChHHHHHHHHHHHHhchhhhhhhhccccccCCceecCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHH
Q 012824 236 GYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILR 315 (456)
Q Consensus 236 Gy~~~~~~p~~~~~~~e~~~~~~~l~~~dllr~dr~~~a~gle~r~PflD~~lve~a~slP~~~k~~~~~~~~~~K~lLR 315 (456)
||.+|+.+|+...|++|+++++..++.++++|+||++|+||+|+|+||||++||+++++||+++|+.++ ++.+|||||
T Consensus 357 GY~~~~~~p~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~lv~~a~~ip~~~K~~~~--~~~~K~iLR 434 (554)
T PRK09431 357 GYLYFHKAPNAKEFHEETVRKLRALHMYDCLRANKAMMAWGVEARVPFLDKEFLDVAMRINPEDKMCGN--GKMEKHILR 434 (554)
T ss_pred CchhhhhCCChhhcCHHHHHHHHHHHHHhhhccchhhhhcCceeecCcCCHHHHHHHHhCCHHHHhcCC--CCCCHHHHH
Confidence 999998888777788888888889999999999999999999999999999999999999999999742 246899999
Q ss_pred HhcccCCCCCCChhhhhccccCCCCCCchhhhHHHHHHHHHhcChHHHhcCCCCCCCCCCchhhHhHHHHHHHHHCCCcc
Q 012824 316 NAFDDDKQPYLPKHILYRQKEQFSDGVGYSWIDGLRDHANKQVTDAMLANSSFVYPENTPTTKEAYYYRTIFEKFFPKNA 395 (456)
Q Consensus 316 ~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~~~p~~ke~~~~~~~~~~~~~~~~ 395 (456)
+||++ +||++|+||+|+||++|++++|++.++++++++++|+.++++...+|.++|.|||+||||+||++|||+++
T Consensus 435 ~a~~~----~LP~~I~~R~K~~f~~~~g~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ke~~~y~~if~~~fp~~~ 510 (554)
T PRK09431 435 EAFEG----YLPESILWRQKEQFSDGVGYSWIDTLKEVAAEQVSDQQLATARFRFPYNTPTTKEAYLYREIFEELFPLPS 510 (554)
T ss_pred HHHhh----hCCHHHhCCCCCCCCCCChhHHHHHHHHHHHHHhCcHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHCCchh
Confidence 99999 99999999999999999998899999999999999999999998999999999999999999999999999
Q ss_pred ccccccCCcccccchhhhhhhhhhhcCCCCCCchhhhHHhHHhh
Q 012824 396 ARATVPGGPSVACSTAKAVEWDAAWSKNPDPSGRAALGVHAAAY 439 (456)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~ 439 (456)
+..+++.+.+|+|++....+|.++|.++.|||||++..+|.++|
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~d~s~r~~~~~~~~~~ 554 (554)
T PRK09431 511 AAECVPGGPSVACSSAKAIEWDEAFKNMDDPSGRAVSGVHQSAY 554 (554)
T ss_pred hhhccCCCCccccccchhhhhhhhcCCCCCcchhhhhccccccC
Confidence 99999999999999887678999999999999999989997654
No 5
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=1.4e-70 Score=589.80 Aligned_cols=358 Identities=28% Similarity=0.475 Sum_probs=294.8
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc----------------------------
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD---------------------------- 52 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~---------------------------- 52 (456)
+|+|||||+|||..+++++++|||+|+|||||+.. ++.++||||+|+|+..
T Consensus 118 ~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~ 196 (589)
T TIGR03104 118 RFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTI 196 (589)
T ss_pred HhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCch
Confidence 58999999999999999999999999999999886 7889999999999742
Q ss_pred cCccEEeCCCcEEEec-CC--eEEEeeCCCCCCC---CCCCCCCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHH
Q 012824 53 CERFISFPPGHIYSSK-QG--GLRRWYNPPCYSE---QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLV 126 (456)
Q Consensus 53 ~~~I~~lpPG~~~~~~-~~--~~~~y~~~~~~~~---~~~~~~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~I 126 (456)
+++|++|||||+++++ ++ ...+||++..... ...+.++.+++++++|.+||++|+.+|+|||++||||+|||+|
T Consensus 197 ~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~I 276 (589)
T TIGR03104 197 LKGVRKLPPATWMTVEPDGSRTQRSYWSLDAGRPADDAARTEADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLI 276 (589)
T ss_pred hhCceeeCCCcEEEEECCCCeEEEeeccCCCCcccccCCCCHHHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHH
Confidence 3689999999999885 34 3568999864321 1123445678999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhhhcCCcccceeccCCCC-----chHHHHHHHHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCcc
Q 012824 127 AAVASRYLADSEAACQWGSQLHSFCIGLEGS-----PDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVT 201 (456)
Q Consensus 127 aala~~~~~~~~~~~~~~~~l~tfsig~~~~-----~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~ 201 (456)
++++++... .+++|||++|+++ +|..+|++||+++|++||++.++++++++.+++++++++.|..
T Consensus 277 aa~~~~~~~---------~~l~tftigf~~~~~~~~dE~~~A~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~~- 346 (589)
T TIGR03104 277 VGLLAEAGV---------DGLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPMV- 346 (589)
T ss_pred HHHHHHhcC---------CCceEEEEEecCCCCCCCChHHHHHHHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCCC-
Confidence 999887642 4699999999753 7999999999999999999999999999999999999876642
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCccccCC------CCh-----------HHH----HH---------
Q 012824 202 TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA------PNK-----------EEF----HQ--------- 251 (456)
Q Consensus 202 ~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~~~~------p~~-----------~~~----~~--------- 251 (456)
..+.+++|++++.+++ +++|+|||+||||+||||.+|... |.. ..+ ..
T Consensus 347 -~~~~~~~~~l~~~a~~-~~kV~LsGeGaDElFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (589)
T TIGR03104 347 -SHDCVAFYLLSEEVSK-HVKVVQSGQGADEVFGGYHWYPPLAAGAGDPVAAYRRAFFDRDHAEYLEMVGPRFHAEDVSG 424 (589)
T ss_pred -CchHHHHHHHHHHHhC-CCeEEeecCchHhcccCcHhHHHHHhhccCchHHHHHHHhccCHHHHHHHhhhhhhccchhH
Confidence 2245788999998876 699999999999999999765321 100 000 00
Q ss_pred HH-------------HHHHHhch-----h-hhhhhhccccccCCceecCCCCCHHHHHHHhcCCccccccCCCCCCcchH
Q 012824 252 ET-------------CRKIKALH-----L-YDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKW 312 (456)
Q Consensus 252 e~-------------~~~~~~l~-----~-~dllr~dr~~~a~gle~r~PflD~~lve~a~slP~~~k~~~~~~~~~~K~ 312 (456)
+. +.++..+. . ..+.+.||++|++|+|+|+||||++|||||++||+++|+.+ .+|+
T Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~d~~~~l~~~~L~~~Dr~sMa~svE~R~PFLD~~lve~a~~lP~~~k~~~-----~~K~ 499 (589)
T TIGR03104 425 EFVADHFARPGADTAVDQALRLDTTVMLVDDPVKRVDNMTMAWGLEARVPFLDHELVELAARIPPELKLAD-----GGKG 499 (589)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhCccccccchhhhhhhccccccCCccCHHHHHHHHhCCHHHhcCC-----CcCH
Confidence 00 00000000 0 11346999999999999999999999999999999999975 2699
Q ss_pred HHHHhcccCCCCCCChhhhhccccCCCCCCchhhhH-HHHHHHHHhcChHHHhcCCCCCCCCCCchhhHhHHHHHHHHH
Q 012824 313 ILRNAFDDDKQPYLPKHILYRQKEQFSDGVGYSWID-GLRDHANKQVTDAMLANSSFVYPENTPTTKEAYYYRTIFEKF 390 (456)
Q Consensus 313 lLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~-~l~~~~~~~l~d~~l~~~~~~~~~~~p~~ke~~~~~~~~~~~ 390 (456)
|||+++++ +||++|++|+|+||+.|.+ .|++ .++++++++++++.+...+++++. .+++++++|
T Consensus 500 iLR~a~~~----~lP~~i~~R~K~gf~~P~~-~w~~~~l~~~~~~~l~~~~~~~~~~~~~~---------~v~~~~~~~ 564 (589)
T TIGR03104 500 VLKEAARG----VIPSEVIDRPKGYFPVPAL-KYLRGPFLEWVRDALTSPAARERGLFQRA---------YVDRLLADP 564 (589)
T ss_pred HHHHHHhh----hCCHHHhCCCCCCCCCcHH-HHhhhHHHHHHHHHhCccchhhcCccCHH---------HHHHHHHHh
Confidence 99999999 9999999999999999997 7887 689999999999888888888763 578899888
No 6
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=4.6e-65 Score=553.23 Aligned_cols=365 Identities=27% Similarity=0.481 Sum_probs=293.1
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc---------------------------c
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD---------------------------C 53 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~---------------------------~ 53 (456)
+|+|||||++||..+++++++||++|+|||||+...++.++||||+++|+.. +
T Consensus 118 ~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~ 197 (628)
T TIGR03108 118 RFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIF 197 (628)
T ss_pred HcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchh
Confidence 5899999999999999999999999999999986446789999999998642 4
Q ss_pred CccEEeCCCcEEEecCC----eEEEeeCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHH
Q 012824 54 ERFISFPPGHIYSSKQG----GLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAV 129 (456)
Q Consensus 54 ~~I~~lpPG~~~~~~~~----~~~~y~~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaal 129 (456)
++|++|||||++.++.+ +..+||++........+.++++++++++|.+||+.|+.+|+|||++||||+|||+|+++
T Consensus 198 ~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~~~~~~~~~~~e~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~ 277 (628)
T TIGR03108 198 KGVKKLEPGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVAL 277 (628)
T ss_pred cCcEEECCCeEEEEECCCcceeccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHH
Confidence 79999999999988632 34689997643212224456678999999999999999999999999999999999999
Q ss_pred HHHHhchhhhhhhcCCcccceeccCCCC--chHHHHHHHHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchH
Q 012824 130 ASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAST 207 (456)
Q Consensus 130 a~~~~~~~~~~~~~~~~l~tfsig~~~~--~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~ 207 (456)
+++... .+++|||+++++. +|..+|++||+++|++|+++.+++++ ++.+++++++.+.|.. ..+.+
T Consensus 278 ~~~~~~---------~~i~t~s~~~~~~~~dE~~~A~~vA~~~g~~h~~~~~~~~~-~~~~~~~~~~~~~P~~--~~~~~ 345 (628)
T TIGR03108 278 MAGLSD---------TPVNTCSIAFDDPAFDESAYARQVAERYGTNHRVETVDPDD-FSLVDRLAGLYDEPFA--DSSAL 345 (628)
T ss_pred HHHhcC---------CCCcEEEEecCCCCCChHHHHHHHHHHhCCCCeEEecCHHH-HHHHHHHHHHhCCCCC--CchHH
Confidence 887542 4799999999754 79999999999999999999999887 5778888887765532 12357
Q ss_pred HHHHHHHHHHhCCCcEEEEcCchhhhccCCccccC----------CC----------------Ch--------H--H---
Q 012824 208 PMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHK----------AP----------------NK--------E--E--- 248 (456)
Q Consensus 208 ~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~~~----------~p----------------~~--------~--~--- 248 (456)
++|.+++.+++ +++|+|||+||||+|+||.+|.. .| .. . .
T Consensus 346 ~~~~~~~~a~~-~~kV~LsG~GgDElf~GY~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (628)
T TIGR03108 346 PTYRVCELARK-RVTVALSGDGGDELFAGYRRYRWHMAEERVRGILPLGLRRPLFGTLGRLYPKADWAPRMLRAKTTFQA 424 (628)
T ss_pred HHHHHHHHHHC-CCCEEEeccchhhcccCcHHHHHHHHHHHHhhhCCHHHHHHHHHHHHhhCcccccchhhhhhhhhHhh
Confidence 78889998765 69999999999999999965421 01 00 0 0
Q ss_pred --------H-H------HHHHHH-----------------H-Hhc-------h------h--------hhh-hhhccccc
Q 012824 249 --------F-H------QETCRK-----------------I-KAL-------H------L--------YDC-LRANKSTS 273 (456)
Q Consensus 249 --------~-~------~e~~~~-----------------~-~~l-------~------~--------~dl-lr~dr~~~ 273 (456)
+ . .+.... + ..+ + . .++ .+.||++|
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lL~~~Dr~sM 504 (628)
T TIGR03108 425 LARDPLEGYFHSVSVLDNALRRQLFSPDFRRELQGYRAIEVLRRHAARAPTDDALSLAQYLDLKTYLPGDILTKVDRASM 504 (628)
T ss_pred hhcchHHHHHHHhhhcChHHHHHHHHHHhhhhcccCCHHHHHHHHhccccCCCHHHHHHHHHHHHhCccccccccCccch
Confidence 0 0 000000 0 000 0 0 012 24799999
Q ss_pred cCCceecCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHHHhcccCCCCCCChhhhhccccCCCCCCchhhhH-HHHH
Q 012824 274 AWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKHILYRQKEQFSDGVGYSWID-GLRD 352 (456)
Q Consensus 274 a~gle~r~PflD~~lve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~-~l~~ 352 (456)
++|+|+|+||||++|||||++||+++|+.+ +.+|+|||+||++ +||++|++|+|+||+.|+. .|++ .+++
T Consensus 505 a~svE~R~PFLD~~lve~a~slP~~~k~~~----~~~K~iLR~a~~~----~LP~~I~~R~K~gF~~p~~-~w~~~~l~~ 575 (628)
T TIGR03108 505 AHGLEVRVPLLDHRLVEWAAGLPPDLKLRG----GEGKYLLKKAMRP----YLPDDVLYRPKMGFSVPLA-AWFRGPLRE 575 (628)
T ss_pred hccccccCCCCCHHHHHHHHhCCHHHhcCC----CCchHHHHHHHHh----hCCHHHhCCCCCCCCCCHH-HHhccHHHH
Confidence 999999999999999999999999999975 4679999999999 9999999999999999997 7886 6899
Q ss_pred HHHHhcChHHHhcCCCCCCCCCCchhhHhHHHHHHHHHCCCccc
Q 012824 353 HANKQVTDAMLANSSFVYPENTPTTKEAYYYRTIFEKFFPKNAA 396 (456)
Q Consensus 353 ~~~~~l~d~~l~~~~~~~~~~~p~~ke~~~~~~~~~~~~~~~~~ 396 (456)
++++++.++.+...|++|+. .++++++++..+..+
T Consensus 576 ~~~~~l~~~~~~~~g~~d~~---------~v~~l~~~~~~~~~~ 610 (628)
T TIGR03108 576 RVRTLVLGETLAETGLFDPA---------FIRKLVDQHQSGRRD 610 (628)
T ss_pred HHHHHhChhhhhhcCCcCHH---------HHHHHHHHhhccCcc
Confidence 99999999888888888863 578899888766544
No 7
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=1.9e-63 Score=523.45 Aligned_cols=317 Identities=46% Similarity=0.748 Sum_probs=265.0
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc----------------------------
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD---------------------------- 52 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~---------------------------- 52 (456)
+|+|||||+|||.++++++++||++|+|||||+.. ++.|+||||+|+|+..
T Consensus 116 ~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~ 194 (467)
T TIGR01536 116 RLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALLAHPRNIKPFPDGAALAPGFGFVRVPPPSTF 194 (467)
T ss_pred HcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHHhccccCcCCCCHHHHHHHhccCccCCCCcc
Confidence 58999999999999999999999999999999986 7899999999988642
Q ss_pred cCccEEeCCCcEEEecCC---eEEEeeCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHH
Q 012824 53 CERFISFPPGHIYSSKQG---GLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAV 129 (456)
Q Consensus 53 ~~~I~~lpPG~~~~~~~~---~~~~y~~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaal 129 (456)
+++|++|||||++.++.+ ..++||.+. .....+.++++++++++|.+||++|+.+++|+|++||||+|||+|+++
T Consensus 195 ~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~ 272 (467)
T TIGR01536 195 FRGVFELEPGHDLPLEDDGLNIERYYWERR--DEHTDSEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAI 272 (467)
T ss_pred cCCcEEcCCCeEEEEeCCCceEEEEecCCC--CCCCCCHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHH
Confidence 478999999999988632 234566522 112224456688999999999999999999999999999999999999
Q ss_pred HHHHhchhhhhhhcCCcccceeccCCC---CchHHHHHHHHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCcccccch
Q 012824 130 ASRYLADSEAACQWGSQLHSFCIGLEG---SPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS 206 (456)
Q Consensus 130 a~~~~~~~~~~~~~~~~l~tfsig~~~---~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~ 206 (456)
+++...+ .++++||+++++ .+|..+|+++|+++|++|+++.++++++++.+++++++++.|. ...+.
T Consensus 273 a~~~~~~--------~~~~~~t~~~~~~~~~~E~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~~~~~p~--~~~~~ 342 (467)
T TIGR01536 273 ARREAPR--------GPVHTFSIGFEGSPDFDESPYARKVADHLGTEHHEVLFSVEEGLDALPEVIYHLEDPT--TIRAS 342 (467)
T ss_pred HHHhcCC--------CCceEEEEecCCCCCCChHHHHHHHHHHhCCcCeEEECCHHHHHHHHHHHHHhhCCCC--CCchH
Confidence 9886521 368999999873 3688899999999999999999999999999999999887553 23346
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCchhhhccCCccccCCCChHHHHHHHH-HHHHhchhhhhhhhccccccCCceecCCCCC
Q 012824 207 TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETC-RKIKALHLYDCLRANKSTSAWGVEARVPFLD 285 (456)
Q Consensus 207 ~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~~~~p~~~~~~~e~~-~~~~~l~~~dllr~dr~~~a~gle~r~PflD 285 (456)
+++|++++.+++.|++|+|||+||||+||||.++..++....+.++.. ..++.....++++.||++|++|+|+|+||||
T Consensus 343 ~~~~~l~~~a~~~G~~vlltG~GaDElf~GY~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~dr~~ma~gvE~R~PflD 422 (467)
T TIGR01536 343 IPLYLLSKLAREDGVKVVLSGEGADELFGGYLYFHEAPAAEALREELQYLDLELYMPGLLRRKDRMSMAHSLEVRVPFLD 422 (467)
T ss_pred HHHHHHHHHHHhcCCEEEEecCcchhcccCchhhhhccccHHHHHHHHHHHHHHhCcccchhHHHHHhhccccccCCcCC
Confidence 788999999999999999999999999999998876554333333322 1233333345667799999999999999999
Q ss_pred HHHHHHHhcCCccccccCCCCCCcchHHHHHhcccCCCCCCChhhhhccccCC
Q 012824 286 KEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKHILYRQKEQF 338 (456)
Q Consensus 286 ~~lve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K~~f 338 (456)
++||||+++||+++|+.+ +.+|||||+|+++ +||++|++|+|.||
T Consensus 423 ~~lv~~a~~lp~~~k~~~----~~~K~iLR~a~~~----~lP~~i~~R~K~gf 467 (467)
T TIGR01536 423 HELVEYALSIPPEMKLRD----GKEKYLLREAFEG----YLPEEILWRKKEGF 467 (467)
T ss_pred HHHHHHHHhCCHHHhcCC----CCcHHHHHHHHhh----hCCHHHhcCCCCCC
Confidence 999999999999999975 4689999999999 99999999999997
No 8
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-63 Score=525.12 Aligned_cols=407 Identities=38% Similarity=0.559 Sum_probs=318.7
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-----cCccEEeCCCcEEEecCCe-EEE
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-----CERFISFPPGHIYSSKQGG-LRR 74 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-----~~~I~~lpPG~~~~~~~~~-~~~ 74 (456)
+|+|||||+|||.++++|+++|||+|+|||||+.. ++.++||||+|+|+.+ +++|++|||||++.++.++ ..+
T Consensus 117 ~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~faSE~Kal~~~~~~~~~~~i~~l~pg~~l~~~~~~~~~~ 195 (542)
T COG0367 117 HLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFASEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGLIRR 195 (542)
T ss_pred HhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEEechhhhhhCCcccccCCeEEcCCCcEEEEcCCCceee
Confidence 58999999999999999999999999999999986 6779999999999999 9999999999999998655 889
Q ss_pred eeCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccC
Q 012824 75 WYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL 154 (456)
Q Consensus 75 y~~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~ 154 (456)
||.+.+.... .+.++..++++++|.+||++|+++|+|+|++||||+|||+||+++++.... ...+|||+|+
T Consensus 196 y~~~~~~~~~-~~~~~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlDSS~Iaa~a~~~~~~--------~~~~~fsvg~ 266 (542)
T COG0367 196 YWRLSEKTSK-ESADELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLDSSLIAAIAAEELGK--------EGKTTFTVGF 266 (542)
T ss_pred eecccccccc-cchHHHHHHHHHHHHHHHHHHhccCCcEEEEeCCCccHHHHHHHHHHhccc--------cceeeeEeec
Confidence 9998776533 345566899999999999999999999999999999999999999998642 1223599999
Q ss_pred CCCc--hHHHHHHHHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhh
Q 012824 155 EGSP--DLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 155 ~~~~--e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDE 232 (456)
+++. |..+|+++|+.||++|+++.++++++.+.++++++++|+|+. +.+++++|++++.++++|++|+||||||||
T Consensus 267 ~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~~~p~~--~~~~~ply~~~~~a~~~g~kVvLSGeGADE 344 (542)
T COG0367 267 EDSDSPDAKYARAVAKFLGTPHHEIILTNEELLNALPEVVKALDTPGG--MAASIPLYLLSRKARAEGEKVVLSGEGADE 344 (542)
T ss_pred CCCCCchHHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhcCCCCc--ccchhHHHHHHHhhhhcCcEEeecCccHHH
Confidence 9874 999999999999999999999999999999999999998875 556789999999999999999999999999
Q ss_pred hccCC-ccccCCCChHHHHHHHHHHHHhchhhh-hhhhccccccCCceecCCCCCHHHHHHHhcCCccccccCCCCCCcc
Q 012824 233 IFGGY-LYFHKAPNKEEFHQETCRKIKALHLYD-CLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIE 310 (456)
Q Consensus 233 lfgGy-~~~~~~p~~~~~~~e~~~~~~~l~~~d-llr~dr~~~a~gle~r~PflD~~lve~a~slP~~~k~~~~~~~~~~ 310 (456)
||||| ++....+....+..+.++....+..++ +.|.|+.++++++|.|+||+|.+++++++++|+..++... +....
T Consensus 345 lFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~~E~r~p~ld~~~~~l~l~~~~~~~i~~~-~~m~~ 423 (542)
T COG0367 345 LFGGYPPYSRFAPGPEELLNEALRRALALIDYNRLARDDRVAAAFGVEARVPFLDRELVDLALKIPPEHKLNRD-RSMAK 423 (542)
T ss_pred HhcCCchhhhhccchHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccCchHHHHHHHHhcCCcccccchh-hhhhh
Confidence 99999 566666665555554443322333333 4679999999999999999999999999999999999763 11245
Q ss_pred hHHHHHhcccCCCCC--CChhhhhccccCCCCCCchhhhHHHHHHHHHhcChHHHhcCCCCCCC-----CCCchhhHhHH
Q 012824 311 KWILRNAFDDDKQPY--LPKHILYRQKEQFSDGVGYSWIDGLRDHANKQVTDAMLANSSFVYPE-----NTPTTKEAYYY 383 (456)
Q Consensus 311 K~lLR~a~~~~~~~~--LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~-----~~p~~ke~~~~ 383 (456)
|.++|-++.+ . +|++|.||+|+.++.+.+..+. ..+..+.+..+.+...-++. ..+.+++.+.+
T Consensus 424 ~le~Rvpf~~----~~~l~~~i~~~~K~~~~~gk~~lr~-----~~~~~~p~~~~~r~k~~~~~~~~~~~~~~~~~~~~~ 494 (542)
T COG0367 424 KLERRVPFSD----GVELPEEIPWREKIAFGYGKGILRI-----AYEKILPDFILSRKKLGFPKPLWGRYYENSLLLWLY 494 (542)
T ss_pred hhheeccccc----chhhHhhCChhhhhhcCCcchhhHh-----hhhccCcHHHhcccccCCCcccccccccchHHHHHH
Confidence 6777888877 6 9999999999988777654332 22333333333332222222 22356788888
Q ss_pred HHHHHHHCCCccccccccCCcccccchhhhhhhhhhhcCCCCCCchhhhHHhHH
Q 012824 384 RTIFEKFFPKNAARATVPGGPSVACSTAKAVEWDAAWSKNPDPSGRAALGVHAA 437 (456)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~ 437 (456)
+.+++++++...-.....+.....| ...|+ ....++|+|... +|.+
T Consensus 495 ~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~---~~~~~~~~~~~~-~~~~ 540 (542)
T COG0367 495 RLIEEEFSPEYPLVDLALVARLYEK----RLWLL---IKGLAYSARLKK-LKPQ 540 (542)
T ss_pred HHHhhhcccccchhhhHHHHHHHhh----ccchh---hhhhHHHHHHhh-cccc
Confidence 8888888886544444332222221 01133 445677887655 5544
No 9
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=100.00 E-value=1.2e-42 Score=339.98 Aligned_cols=227 Identities=44% Similarity=0.730 Sum_probs=183.8
Q ss_pred HHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--CCchHHHHHHHHHHhCCC
Q 012824 96 RKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTR 173 (456)
Q Consensus 96 r~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~e~~~A~~vA~~lg~~ 173 (456)
+++|.+||+.|+.+++|||++||||+|||+|++++++... .++++||+++. +.+|..+|+++|+++|++
T Consensus 1 r~~l~~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~---------~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~ 71 (269)
T cd01991 1 RELLEDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLP---------EPVKTFSIGFGFEGSDEREYARRVAEHLGTE 71 (269)
T ss_pred ChHHHHHHHHHhccCCceEEeecccHHHHHHHHHHHHhhC---------CCCceEEEeeCCCCCChHHHHHHHHHHhCCc
Confidence 4689999999999999999999999999999999988753 34889998765 346899999999999999
Q ss_pred ceEEEeChhhHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCccccCCCCh-------
Q 012824 174 HHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK------- 246 (456)
Q Consensus 174 h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~~~~p~~------- 246 (456)
|+++.++.+++.+.++++++..+.|.. ..+.++++.+++.+++.|++|+|||+||||+|+||..+......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf~Gy~~~~~~~~~~~~~~~~ 149 (269)
T cd01991 72 HHEVEFTPADLLAALPDVIWELDEPFA--DSSAIPLYLLSRLARKHGIKVVLSGEGADELFGGYPRYRRAPLARRRRRRL 149 (269)
T ss_pred ceEEEcCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHHHHHHHHhCCEEEEecCCccccccChHHHHHHHHHhhccccC
Confidence 999999999988888888777665532 23456788999999999999999999999999999765432110
Q ss_pred -------------HHHHHHHHHHHHhchhh--------------------hhhhhccccccCCceecCCCCCHHHHHHHh
Q 012824 247 -------------EEFHQETCRKIKALHLY--------------------DCLRANKSTSAWGVEARVPFLDKEFINTAM 293 (456)
Q Consensus 247 -------------~~~~~e~~~~~~~l~~~--------------------dllr~dr~~~a~gle~r~PflD~~lve~a~ 293 (456)
..+...+.+.+..+... -+.+.|+++|++|+|+|+||||++||||++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dr~~m~~gvE~R~PflD~~lve~~~ 229 (269)
T cd01991 150 LGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLTYLLGDLLLRDDRASMAHGLEVRVPFLDHRLVEFAL 229 (269)
T ss_pred cchhhHHHHhhhhhhhHHHHHHHHHhCcccccCCHHHHHHHHHHHhcccchHHHhhHHHHHhcccccCCCCCHHHHHHHH
Confidence 00111111111111111 134689999999999999999999999999
Q ss_pred cCCccccccCCCCCCcchHHHHHhcccCCCCCCChhhhhccccCCCCC
Q 012824 294 SIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKHILYRQKEQFSDG 341 (456)
Q Consensus 294 slP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K~~f~~~ 341 (456)
+||+++|+.+ +.+|+|||+++++ +||++|++|+|+||..|
T Consensus 230 ~lP~~~k~~~----~~~K~iLR~a~~~----~lP~~i~~r~K~g~~~p 269 (269)
T cd01991 230 SLPPELKIRG----GREKYLLREAAAG----LLPDEILWRPKRGFQVP 269 (269)
T ss_pred cCCHHHhcCC----CCchHHHHHHHHh----hCCHHHHcCCCCCCCCC
Confidence 9999999975 4689999999999 99999999999999864
No 10
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=100.00 E-value=9.6e-41 Score=322.31 Aligned_cols=225 Identities=37% Similarity=0.648 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCc--hHHHHHHHHHHhC
Q 012824 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSP--DLKAAREVADYLG 171 (456)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~--e~~~A~~vA~~lg 171 (456)
+||++|.+||++|+.++.++|+.||||+|||+|++++++.. +.++++||+++++.. |..+|++||+++|
T Consensus 1 ~~r~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~---------~~~~~~~t~~~~~~~~~e~~~a~~va~~~~ 71 (255)
T PF00733_consen 1 ELRELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQG---------GPPIKTFTIGFEDDDYDEREYARKVARHLG 71 (255)
T ss_dssp HHHHHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTC---------CSEEEEEEEECSSCC--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhh---------CCceeEEEEEcCCCcchhHHHHHHHhcccc
Confidence 68999999999999999999999999999999999999833 268999999998876 9999999999999
Q ss_pred CCceEEEeChhhHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCccccCC----CChH
Q 012824 172 TRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA----PNKE 247 (456)
Q Consensus 172 ~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~~~~----p~~~ 247 (456)
++|+++.++.+++.+.+++++..++.|.......+.+.+.+++.+++.|++++|||+||||+|+||+.+... ....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf~G~~~~~~~~~~~~~~~ 151 (255)
T PF00733_consen 72 LEHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELFGGYPRYRPAYLRPLLLG 151 (255)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHHTTTT-TTGGGCGHCCHH
T ss_pred cccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEeccccccccccchHhHHHHhhhhhhh
Confidence 999999999999999999999888777532122356677788988888999999999999999999654322 2222
Q ss_pred HHHHHHHHHHHhc------------------------hhhhhhhhccccccCCceecCCCCCHHHHHHHhcCCccccccC
Q 012824 248 EFHQETCRKIKAL------------------------HLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVR 303 (456)
Q Consensus 248 ~~~~e~~~~~~~l------------------------~~~dllr~dr~~~a~gle~r~PflD~~lve~a~slP~~~k~~~ 303 (456)
.....+.+.+..+ ....+.+.+++++.+|+|+|.||||++||+||++||.++|+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~PflD~~lv~~~~~lP~~~~~~~ 231 (255)
T PF00733_consen 152 RLSRELRRFIRNLLRADLERFQQPYDRSEYFDFWKRLLARLLPRSDRASMAYGIEVRSPFLDRRLVEFCLSLPPEQRFDG 231 (255)
T ss_dssp HHHHHHHHHHHHCCCTHH----------------HHHHHHHSCCHCHHHHCTT-EEE-GGGSHHHHHHHHCB-GGGCCET
T ss_pred hhhhhhhHHHHHHhhhccccccccccccccccccccccchhhhhhhhhhhhcccccCceecCHHHHHHHHhCCHHHHcCC
Confidence 2222222222211 1112235678899999999999999999999999999999986
Q ss_pred CCCCCcchHHHHHhcccCCCCCCChhhhhccc
Q 012824 304 PDLGRIEKWILRNAFDDDKQPYLPKHILYRQK 335 (456)
Q Consensus 304 ~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K 335 (456)
+.+|+|||++|++ +||++|++|+|
T Consensus 232 ----~~~K~llR~a~~~----~lP~~i~~r~K 255 (255)
T PF00733_consen 232 ----GIYKYLLREAMKD----LLPPEILWRKK 255 (255)
T ss_dssp ----TECTHHHHHHHTC----CS-HHHHTS-S
T ss_pred ----CCCcHHHHHHHHh----hCCHHHhcCCC
Confidence 4679999999999 99999999998
No 11
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=258.74 Aligned_cols=325 Identities=22% Similarity=0.286 Sum_probs=222.1
Q ss_pred cceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeEEEeeCCCCC
Q 012824 2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPCY 81 (456)
Q Consensus 2 L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~~~y~~~~~~ 81 (456)
+.|.|+|++||.+.++|+..||++|++.|-|...+.+..+..|.. -...+.|++|||+......+.-.-.|-+....
T Consensus 114 ~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~---g~~~~~i~e~~~~F~~~~~d~~~w~y~s~~le 190 (520)
T KOG0573|consen 114 LQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTV---GTSGKLIYEVPPVFRNKLTDRVPWPYLSTKLE 190 (520)
T ss_pred ccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeecc---ccCCccccccCchhhhccCCccccccccceec
Confidence 689999999999999999999999999999998754433332321 11234678999994433322101011110000
Q ss_pred C---CCCCCC-------------CCcHHHHHHHHHHHHHHhhh-------c--------CCCeEEeccCcccHHHHHHHH
Q 012824 82 S---EQIPSN-------------PYDPLVLRKAFEKAVVKRLM-------T--------DVPFGVLLSGGLDSSLVAAVA 130 (456)
Q Consensus 82 ~---~~~~~~-------------~~~~~~lr~~L~~AV~~rl~-------s--------d~~vgv~LSGGlDSs~Iaala 130 (456)
. .+.+.. .+.+..+.+.+.+++++|.. + ..+|+|++|||+||++||.++
T Consensus 191 ~~~~~s~~p~~~i~~~~l~~~~~~~~v~~l~~~l~ds~k~rvl~i~~rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~ 270 (520)
T KOG0573|consen 191 NSLGPSLPPLCDISEIFLNQSHRSEVVSGLHTGLRDSLKDRVLVIPPRLCANILLRCIHESNVCVLFSGGVDSTVVAVLA 270 (520)
T ss_pred ccCCCcCCCccchHHHHhhhHHHHHHHhhhHHHHHHHHhhhhhccChhHhhhccccccccCcEEEEecCCchHHHHHHHH
Confidence 0 001110 12345667777888877632 1 368999999999999999999
Q ss_pred HHHhchhhhhhhcCCcccceeccCC---CC-----chHHHHHHHHHHhCC-------CceEEEeChhhHHHHHHHHHHhh
Q 012824 131 SRYLADSEAACQWGSQLHSFCIGLE---GS-----PDLKAAREVADYLGT-------RHHEFHFTVQEGIDALEEVIYHI 195 (456)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~tfsig~~---~~-----~e~~~A~~vA~~lg~-------~h~~~~~~~~~~~~~l~~~i~~~ 195 (456)
....++. .+|....+.|. +. +|++.+++-++.|.. ...+++++-+++..+.+. |.++
T Consensus 271 h~~vp~n-------e~IdLINVaF~n~e~~~~~~~PDRktgr~g~~eL~s~~P~R~~nlV~vnV~~~El~~~k~~-I~~L 342 (520)
T KOG0573|consen 271 HYVVPEN-------EPIDLINVAFGNPEGSKEQNVPDRKTGRRGLEELQSLYPKRSWNLVEVNVTYEELQKAKEH-IKHL 342 (520)
T ss_pred HhhcCCC-------CceeEEEeeccCCCcccccCCccHHHHHHHHHHHHHhCCcceEEEEeccCCHHHHHHHHHH-HHHh
Confidence 9887653 57777777663 22 788888888877653 344566777776554443 4444
Q ss_pred ccCCcccccch--HHHHHHHH----------HHHhCCCcEEEEcCchhhhccCCccccC---CCChHHHHHHHHHHHHhc
Q 012824 196 ETYDVTTIRAS--TPMFLMSR----------KIKSLGVKMVISGEGSDEIFGGYLYFHK---APNKEEFHQETCRKIKAL 260 (456)
Q Consensus 196 e~~~~~~i~~~--~~~~~l~~----------~a~~~g~~vvLsG~GgDElfgGy~~~~~---~p~~~~~~~e~~~~~~~l 260 (456)
=.|..+-.+-+ .+.|+.++ .-+ ...+|+|+|-||||+||||.+|.. .+..+.+.+|+.+++.++
T Consensus 343 iyP~dtvmD~SIgcafwFAsrg~G~~~~~~~sy~-s~a~V~l~GsGADEllgGY~rhr~rf~~~~~e~l~eEl~~dl~rI 421 (520)
T KOG0573|consen 343 IYPKDTVMDLSIGCAFWFASRGRGVDSENQQSYR-SYARVALLGSGADELLGGYHRHRTRFEKEDLEGLREELERDLFRI 421 (520)
T ss_pred hCcCccccccccceEEEEeeccccccccCccccc-cccEEEEecCChHHhhccHHHHHhhhccCCcHHHHHHHHHHHhhh
Confidence 22322212222 23444444 222 347999999999999999987762 233346889999999999
Q ss_pred hhhhhhhhccccccCCceecCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHHHhcccCCCCCCChhhhhcc-ccCCC
Q 012824 261 HLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKHILYRQ-KEQFS 339 (456)
Q Consensus 261 ~~~dllr~dr~~~a~gle~r~PflD~~lve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~-K~~f~ 339 (456)
..+++-|.||....+|.|+|+||||..||+|..++|...|+..+.. |.+|.|||++.+.+ -||......+ .++|+
T Consensus 422 s~RNLgRDDRViad~Gke~R~PFLde~vV~~~~~l~~~~k~~l~l~-GG~KlllRe~~~~l---Gl~~~s~~pKrAmQFG 497 (520)
T KOG0573|consen 422 SHRNLGRDDRVIADSGKEVRSPFLDENVVKLSNALPVSVKMMLGLR-GGEKLLLREAGRRL---GLPSASTEPKRAMQFG 497 (520)
T ss_pred hhcccCccchhhhccCceEeccchHHHHHHHHHhcchhHHhhhccc-chhhHHHHHHHHHh---CCCcccccchHHHHhh
Confidence 9999999999999999999999999999999999999999987654 36899999999985 3665443222 34565
Q ss_pred CCC
Q 012824 340 DGV 342 (456)
Q Consensus 340 ~~~ 342 (456)
..+
T Consensus 498 Sr~ 500 (520)
T KOG0573|consen 498 SRM 500 (520)
T ss_pred hhh
Confidence 543
No 12
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=99.83 E-value=2.2e-20 Score=174.34 Aligned_cols=85 Identities=36% Similarity=0.734 Sum_probs=76.6
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhcc-CccEEeCCCcEEEecCCeEEEeeCCC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDC-ERFISFPPGHIYSSKQGGLRRWYNPP 79 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~-~~I~~lpPG~~~~~~~~~~~~y~~~~ 79 (456)
+|+|||||||||.+++++++||||+|++||||++..+|.++||||+|+|...| +.|..|||||++.. .+++++|++|.
T Consensus 124 ~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s-~ggl~~~~~p~ 202 (224)
T cd01910 124 DLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS-EGGLRSFEHPM 202 (224)
T ss_pred hcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC-CCCEEEeeCCC
Confidence 58999999999999999999999999999999976688999999999999999 79999999999876 66789999998
Q ss_pred CCCCCCC
Q 012824 80 CYSEQIP 86 (456)
Q Consensus 80 ~~~~~~~ 86 (456)
|.....|
T Consensus 203 ~~~~~vp 209 (224)
T cd01910 203 NKLKAVP 209 (224)
T ss_pred chhhcCC
Confidence 8643333
No 13
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.78 E-value=6.3e-19 Score=163.72 Aligned_cols=75 Identities=27% Similarity=0.535 Sum_probs=65.1
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc------------------cCccEEeCCC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD------------------CERFISFPPG 62 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~------------------~~~I~~lpPG 62 (456)
+|+|||||+|||.+ ++|+++|||+|+|||||... +.++||||+|+|+.. +++|++||||
T Consensus 100 ~L~G~FAfai~D~~-~~L~laRDr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG 176 (199)
T cd01909 100 LAEGDFCFFIEDGN-GRLTLATDHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPG 176 (199)
T ss_pred HcCEEEEEEEEcCC-CEEEEEECCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCC
Confidence 58999999999999 99999999999999999864 789999999999753 5799999999
Q ss_pred cEEEec-C------CeEEEeeCC
Q 012824 63 HIYSSK-Q------GGLRRWYNP 78 (456)
Q Consensus 63 ~~~~~~-~------~~~~~y~~~ 78 (456)
|++.++ + ...++||.|
T Consensus 177 ~~l~~~~~g~~~~~~~~~~yW~p 199 (199)
T cd01909 177 TVNVLTFDGGSYGTAESRRTWTP 199 (199)
T ss_pred cEEEEeeCCcccceEEEEEeecC
Confidence 998664 1 145789976
No 14
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.62 E-value=9.3e-16 Score=145.94 Aligned_cols=76 Identities=41% Similarity=0.782 Sum_probs=67.5
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc---------------------------c
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD---------------------------C 53 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~---------------------------~ 53 (456)
+|+|+|||++||.++++++++|||+|++||||+.. ++.++||||+++|+.. +
T Consensus 116 ~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aSe~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~ 194 (220)
T cd00712 116 RLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIF 194 (220)
T ss_pred HhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEcchHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchh
Confidence 47999999999999999999999999999999986 6889999999999753 3
Q ss_pred CccEEeCCCcEEEecCC--eEEEeeC
Q 012824 54 ERFISFPPGHIYSSKQG--GLRRWYN 77 (456)
Q Consensus 54 ~~I~~lpPG~~~~~~~~--~~~~y~~ 77 (456)
++|++|||||++.++.+ +.++||+
T Consensus 195 ~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 195 KGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred cCceEECCceEEEEECCCeEEeeeCC
Confidence 69999999999998754 5678984
No 15
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.48 E-value=3.1e-13 Score=121.18 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=86.3
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceec--cCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~ 189 (456)
.+.++||||+||+++++++.+... .++.++++ ++....+..+++++|+. |++++.+.++.++..+...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~---------~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~ 72 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG---------LNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQL 72 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC---------CceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHH
Confidence 478999999999999999987542 14444444 55433467899999999 8888777777765543322
Q ss_pred HHHH-hhccCCcccccch-HHHHHHHHHHHhCCCcEEEEcCchhhhccCCccccCCCChHHH
Q 012824 190 EVIY-HIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEF 249 (456)
Q Consensus 190 ~~i~-~~e~~~~~~i~~~-~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~~~~p~~~~~ 249 (456)
..+. ..+.+ +..+. .....+.+.|++.|++++++|+++||+|+||+.+...+...++
T Consensus 73 ~~l~~~~~~p---~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~~Gy~~~~~~~~~~~~ 131 (154)
T cd01996 73 ARFKAKVGDP---CWPCDTAIFTSLYKVALKFGIPLIITGENPAQEFGGIREEEGGIIDERR 131 (154)
T ss_pred HHHhcccCCC---ChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhcccccccccchhHHHH
Confidence 2211 12222 22222 3344677888899999999999999999999988766554444
No 16
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.45 E-value=8.9e-13 Score=133.52 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=87.2
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcc--cceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQL--HSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l--~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~ 189 (456)
.+.|.+|||+|||.+++++++..+ .++ .+|+.++....+...++++++.+|++|+.+.++++.+.+.+.
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~~g---------l~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~ 131 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKKLG---------LNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQR 131 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHHhC---------CceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHH
Confidence 488999999999999988865442 233 455556653346679999999999999999999887665555
Q ss_pred HHHHhhccCCcccccch-HHHHHHHHHHHhCCCcEEEEcCchhhhccCCccc
Q 012824 190 EVIYHIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (456)
Q Consensus 190 ~~i~~~e~~~~~~i~~~-~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~ 240 (456)
..+...+.| +..+. .....+.+.|++.|+++|++|+++||+||||..-
T Consensus 132 ~~~~~~~~p---c~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~fgGy~~~ 180 (343)
T TIGR03573 132 AYFKKVGDP---EWPQDHAIFASVYQVALKFNIPLIIWGENIAEEYGGDSEE 180 (343)
T ss_pred HHHhccCCC---chhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHhcCCcccc
Confidence 555543333 33332 3345678889999999999999999999998643
No 17
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.43 E-value=1.5e-13 Score=119.15 Aligned_cols=51 Identities=45% Similarity=0.702 Sum_probs=37.7
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhh
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSD 51 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~ 51 (456)
+|+|+|||++||+++++++++|||+|+|||||++.+++.++||||+++|++
T Consensus 75 ~l~G~fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 75 RLDGPFAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp T--EEEEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred hCCceEEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 589999999999999999999999999999999974369999999999874
No 18
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.20 E-value=2.5e-11 Score=111.97 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=49.7
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEec-CCeEEEecccchhhhccCccEEeCCCc
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL-DGSIWFASEMKALSDDCERFISFPPGH 63 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~-~~~~~faSeik~L~~~~~~I~~lpPG~ 63 (456)
+|+|+|||++||..+++++++|||+|+|||||+... ++.|+|||+..... .....++||+-
T Consensus 118 ~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~~~~--~~~~~e~~~~g 179 (181)
T cd03766 118 SIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSS--GSGFQEVLAGG 179 (181)
T ss_pred hcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccCCCC--CCceEECCCCc
Confidence 589999999999999999999999999999999864 68899999864321 22456677643
No 19
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.15 E-value=1.1e-10 Score=113.35 Aligned_cols=70 Identities=31% Similarity=0.416 Sum_probs=61.7
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-cCccEEeCCCcEEEecCCeE
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGL 72 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~~~~ 72 (456)
+|+|+|++++||. ++++++||++|++||||+...++.++||||.++|... .+.++.|||||++.++.+..
T Consensus 153 ~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~ 223 (252)
T cd00715 153 RVKGAYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGL 223 (252)
T ss_pred hccCceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCce
Confidence 4789999999997 8899999999999999998633789999999999885 67899999999998875444
No 20
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.14 E-value=4.9e-10 Score=116.49 Aligned_cols=116 Identities=24% Similarity=0.292 Sum_probs=80.6
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeEEEe-eCCC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRW-YNPP 79 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~~~y-~~~~ 79 (456)
+|+|+|||++.+. ++++++|||+|+|||||+.. +.++||||.++|...++.|+.|+||+++.++.++++.+ +...
T Consensus 154 ~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~~--~~~~~ASE~~Al~~~~~~v~~l~PGeiv~i~~~g~~~~~~~~~ 229 (442)
T PRK08341 154 EVKGAYSVAILFD--GKIIVARDPVGFRPLSYGEG--DGHYFASEDSALRMFVNEIRDVFPGEVFVVSEGEVESKVLARE 229 (442)
T ss_pred hccCceEEEEEEC--CEEEEEEcCCCceEEEEEEC--CEEEEEeCcHHHHhhCCeEEEeCCCEEEEEECCceEEEeeccC
Confidence 5899999999985 78999999999999999973 45899999999998888999999999998875533321 1110
Q ss_pred CCC--------CCCCC---CCCcHHHHHHHHHHHHHHhhh--cCCCeEEeccCc
Q 012824 80 CYS--------EQIPS---NPYDPLVLRKAFEKAVVKRLM--TDVPFGVLLSGG 120 (456)
Q Consensus 80 ~~~--------~~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~~vgv~LSGG 120 (456)
... -..|+ ....+...|..+-+...+... .|.-+++.+||-
T Consensus 230 ~~~~C~fe~iYfarpds~~~g~~v~~~R~~~G~~La~~~~~~~D~Vv~VPdsg~ 283 (442)
T PRK08341 230 KHHHCVFEYIYFARPDSVIDGVSVYSARYRMGVELARESPAEGDVVIAVPDSGR 283 (442)
T ss_pred CCccceEEEEEecCCccccCCcCHHHHHHHHHHHhhcccCCCCceEEEecCchH
Confidence 000 01121 122355677666666665543 244466777776
No 21
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.11 E-value=6.1e-10 Score=116.65 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=82.8
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-cCccEEeCCCcEEEecCCeEEEeeC-C
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLRRWYN-P 78 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~~~~~~y~~-~ 78 (456)
+|+|+|||++.+. ++++++|||+|+|||||+.. ++.++||||.++|... .+.|+.|+||+++.++.+.++.+.. +
T Consensus 171 ~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~~~~ 247 (474)
T PRK06388 171 RLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIFKLD 247 (474)
T ss_pred hccCceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEEecC
Confidence 5899999999875 78999999999999999986 6679999999999986 4579999999998886544433322 1
Q ss_pred CCCCC---------CCCC---CCCcHHHHHHHHHHHHHHhhh--cCCCeEEeccC
Q 012824 79 PCYSE---------QIPS---NPYDPLVLRKAFEKAVVKRLM--TDVPFGVLLSG 119 (456)
Q Consensus 79 ~~~~~---------~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~~vgv~LSG 119 (456)
..... ..|+ ....+.+.|..+-+...+... .|.-+.|.+||
T Consensus 248 ~~~~~~C~fE~iYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s~ 302 (474)
T PRK06388 248 GDKVAHCMFEYVYFSRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSG 302 (474)
T ss_pred CCccccceEEEEeecCCccccCCcHHHHHHHHHHHHHHhhccCCCcEEEeeCCCc
Confidence 10000 1121 123456777777766666543 34447788887
No 22
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.09 E-value=9.7e-10 Score=115.52 Aligned_cols=105 Identities=27% Similarity=0.358 Sum_probs=77.2
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-cCccEEeCCCcEEEecCCe-EEEee--
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGG-LRRWY-- 76 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~~~-~~~y~-- 76 (456)
+|+|+|||++++. ++++++|||+|+|||||+.. ++.++||||.++|... .+.++.|+||+.+.++... ++.+.
T Consensus 174 ~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~ 250 (479)
T PRK09123 174 QVEGAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIKPF 250 (479)
T ss_pred HhhcceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEEec
Confidence 4799999999986 68999999999999999986 6789999999999754 5778999999999887433 43322
Q ss_pred CCCCCCC--------CCCC---CCCcHHHHHHHHHHHHHHhhh
Q 012824 77 NPPCYSE--------QIPS---NPYDPLVLRKAFEKAVVKRLM 108 (456)
Q Consensus 77 ~~~~~~~--------~~~~---~~~~~~~lr~~L~~AV~~rl~ 108 (456)
....... ..|+ ....+.++|..+.+...+...
T Consensus 251 ~~~~~~~C~FE~VYfarPdS~~~g~~vy~~R~~~g~~La~~~~ 293 (479)
T PRK09123 251 PPQPARFCIFEYVYFARPDSVVGGRSVYEVRKNIGRELARESP 293 (479)
T ss_pred CCCCCCCChhheEEecCCCceECCeEHHHHHHHHHHHHHHhCC
Confidence 2110000 1121 234467888888888877654
No 23
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.09 E-value=3.6e-10 Score=109.80 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=79.3
Q ss_pred HhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC--CchHHHHHHHHHHhCCCceEEEeChh
Q 012824 105 KRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYLGTRHHEFHFTVQ 182 (456)
Q Consensus 105 ~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~e~~~A~~vA~~lg~~h~~~~~~~~ 182 (456)
..+....++.+++|||+||+++++++.+.. .++.++++..+. ..|...|+++|+++|++|+.+.+++
T Consensus 7 ~~l~~~~~vlVa~SGGvDSs~ll~la~~~g----------~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~- 75 (252)
T TIGR00268 7 NFLKEFKKVLIAYSGGVDSSLLAAVCSDAG----------TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDK- 75 (252)
T ss_pred HHHHhcCCEEEEecCcHHHHHHHHHHHHhC----------CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHH-
Confidence 344455679999999999999999998752 467888876543 2478999999999999999888743
Q ss_pred hHHHHHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhhccC
Q 012824 183 EGIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEIFGG 236 (456)
Q Consensus 183 ~~~~~l~~~i~~~e~~~~~~i~~~~~~~-~l~~~a~~~g~~vvLsG~GgDElfgG 236 (456)
+.+.+ . +.....+..+...++ .+.+.|++.|++++++|+.+|+++.+
T Consensus 76 -~~~~~----~--~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~ 123 (252)
T TIGR00268 76 -MINPF----R--ANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDH 123 (252)
T ss_pred -HHHHH----H--hCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccc
Confidence 21111 1 111111111222223 45677888999999999999998754
No 24
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=99.08 E-value=3.8e-10 Score=103.96 Aligned_cols=80 Identities=39% Similarity=0.785 Sum_probs=70.3
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccC-ccEEeCCCcEEEecCCeEEEeeCCC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCE-RFISFPPGHIYSSKQGGLRRWYNPP 79 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~-~I~~lpPG~~~~~~~~~~~~y~~~~ 79 (456)
.|+|.|||||||..++++++|||.-|..||||+.+.+|.++||+++..|...|. ..-.+|+|+++... +.++.|-+|.
T Consensus 128 ~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~-~Gl~sfehP~ 206 (228)
T PF12481_consen 128 DLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSE-GGLRSFEHPK 206 (228)
T ss_pred hccCceEEEEEecCCCcEEEeecCCCCcceEEEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEec-CceEeecCCc
Confidence 489999999999999999999999999999999988899999999999988875 56689999998765 4577777765
Q ss_pred CC
Q 012824 80 CY 81 (456)
Q Consensus 80 ~~ 81 (456)
..
T Consensus 207 nk 208 (228)
T PF12481_consen 207 NK 208 (228)
T ss_pred cc
Confidence 44
No 25
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.07 E-value=1.1e-09 Score=114.33 Aligned_cols=106 Identities=25% Similarity=0.340 Sum_probs=74.6
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-cCccEEeCCCcEEEec--CCeE--EEe
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSK--QGGL--RRW 75 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~--~~~~--~~y 75 (456)
+|+|+|||+++|. ++++++||++|+|||||+...++.++||||.++|... .+.++.++||+++.++ ++.+ .++
T Consensus 153 ~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~~~~~~~~ 230 (445)
T PRK08525 153 KIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESIQL 230 (445)
T ss_pred hcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCCceEEEEe
Confidence 5899999999985 6899999999999999987535689999999999554 4668889999998876 3233 234
Q ss_pred eCCCC----CC---CCCCC---CCCcHHHHHHHHHHHHHHhhh
Q 012824 76 YNPPC----YS---EQIPS---NPYDPLVLRKAFEKAVVKRLM 108 (456)
Q Consensus 76 ~~~~~----~~---~~~~~---~~~~~~~lr~~L~~AV~~rl~ 108 (456)
+.... +. ...|+ ....+-++|..+-+...+.+.
T Consensus 231 ~~~~~~~c~fe~iY~~rpds~~~g~~v~~~R~~~G~~La~~~~ 273 (445)
T PRK08525 231 FEPTPRICAFEYIYFARPDSIVFGKNVYEVRKKMGEELAKKFP 273 (445)
T ss_pred cCCCCccceeEeeeecCCCceECCEEHHHHHHHHHHHHHHHhc
Confidence 43210 00 01121 123456777777776666654
No 26
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.06 E-value=3.4e-10 Score=118.46 Aligned_cols=115 Identities=25% Similarity=0.295 Sum_probs=79.4
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-cCccEEeCCCcEEEecCCeEEEee-CC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLRRWY-NP 78 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~~~~~~y~-~~ 78 (456)
+|+|+|||+++|. +.++++|||+|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++..+++.+- .+
T Consensus 163 ~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~~~~ 239 (475)
T PRK07631 163 MLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSERFAP 239 (475)
T ss_pred hCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEecCC
Confidence 5899999999996 67999999999999999986 6789999999999765 356889999999988654433221 11
Q ss_pred CCCCC---------CCCC---CCCcHHHHHHHHHHHHHHhhh--cCCCeEEecc
Q 012824 79 PCYSE---------QIPS---NPYDPLVLRKAFEKAVVKRLM--TDVPFGVLLS 118 (456)
Q Consensus 79 ~~~~~---------~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~~vgv~LS 118 (456)
..... ..|+ ....+.+.|..+-+...+... .|.=++|.+|
T Consensus 240 ~~~~~~C~fE~iYfarpdS~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s 293 (475)
T PRK07631 240 NQNRSICSMEYIYFARPDSNVDGINVHTARKNLGKRLALEAPVEADVVTGVPDS 293 (475)
T ss_pred CCCcccceEEEEEeecCCcccCCeEHHHHHHHHHHHHHhhCCCCCcEEEEechh
Confidence 11000 1121 133466788777777666543 2333455544
No 27
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.05 E-value=3.7e-10 Score=119.04 Aligned_cols=116 Identities=26% Similarity=0.343 Sum_probs=83.5
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-cCccEEeCCCcEEEecCCe--EEEeeC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGG--LRRWYN 77 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~~~--~~~y~~ 77 (456)
+|+|+|||+++|. ++++++||++|+|||||+.. ++.++||||.++|... .+.|+.|+||+++.++.+. ..+||.
T Consensus 183 ~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~~~~~ 259 (510)
T PRK07847 183 TVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRSTRFAE 259 (510)
T ss_pred HhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEEeccC
Confidence 4789999999996 68999999999999999986 6779999999999876 6889999999999887543 344554
Q ss_pred CCCCC---C----CCCC---CCCcHHHHHHHHHHHHHHhhh--cCCCeEEeccC
Q 012824 78 PPCYS---E----QIPS---NPYDPLVLRKAFEKAVVKRLM--TDVPFGVLLSG 119 (456)
Q Consensus 78 ~~~~~---~----~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~~vgv~LSG 119 (456)
+.... + ..|+ ....+.+.|..+-+...+... .|.=++|.+||
T Consensus 260 ~~~~~C~fE~vYfarpdS~~~g~~v~~~R~~~G~~La~~~~~~~D~VvpVP~sG 313 (510)
T PRK07847 260 PTPKGCVFEYVYLARPDTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESG 313 (510)
T ss_pred CCCCCCeEEEEEecCCcceeCCeEHHHHHHHHHHHHHhhCCCCCeEEEeccCch
Confidence 32100 0 1121 233466777777766665543 23335566664
No 28
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.05 E-value=2.3e-09 Score=103.93 Aligned_cols=134 Identities=23% Similarity=0.277 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC--CchHHHHHHHHHH
Q 012824 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADY 169 (456)
Q Consensus 92 ~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~e~~~A~~vA~~ 169 (456)
.+.+...|++.|++. ....+.+.||||+||+++++++.+..+. .++.++++.... ..|...|+++|++
T Consensus 7 ~~~l~~~l~~~~~~~--~~~~vvv~lSGGiDSs~~a~la~~~~~~--------~~v~~~~~~~~~~~~~~~~~a~~~a~~ 76 (248)
T cd00553 7 INALVLFLRDYLRKS--GFKGVVLGLSGGIDSALVAALAVRALGR--------ENVLALFMPSRYSSEETREDAKELAEA 76 (248)
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHHHHHhCc--------ccEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 344555555555543 2346999999999999999999887631 368888887643 3588999999999
Q ss_pred hCCCceEEEeChhhHHHHHHHHHHhh--ccCCccc---ccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 012824 170 LGTRHHEFHFTVQEGIDALEEVIYHI--ETYDVTT---IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 170 lg~~h~~~~~~~~~~~~~l~~~i~~~--e~~~~~~---i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~ 238 (456)
+|++|+++.+++ ..+.+...+... +.++..+ +.+-+-+..+...|.+.|..|+-||+ .+|++.||.
T Consensus 77 lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~~G~~ 147 (248)
T cd00553 77 LGIEHVNIDIDP--AVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELLLGYF 147 (248)
T ss_pred hCCeEEEeccHH--HHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHHhCCe
Confidence 999999887643 233332222211 1111100 11112233456677788888888988 578888874
No 29
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.03 E-value=3.2e-09 Score=111.43 Aligned_cols=70 Identities=31% Similarity=0.432 Sum_probs=59.8
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-cCccEEeCCCcEEEecCCeE
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGL 72 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~~~~ 72 (456)
+|+|+|||++.+. ++++++|||+|+|||||+...++.++||||.++|... .+.|+.|+||+.+.++.+.+
T Consensus 164 ~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g~ 234 (484)
T PRK07272 164 TVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEGI 234 (484)
T ss_pred HccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCce
Confidence 4899999999986 6899999999999999987545679999999999765 36789999999998875443
No 30
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.01 E-value=5.7e-10 Score=105.83 Aligned_cols=62 Identities=31% Similarity=0.571 Sum_probs=56.4
Q ss_pred CcceeEEEEEEECCCC-EEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEE
Q 012824 1 MLDGMFSFVLLDTRDK-SFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYS 66 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~-~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~ 66 (456)
+|+|+|||++||..++ +++++|| +|||||+.. ++.++||||+++|...+..|..|..|.++.
T Consensus 152 ~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~~~~~~~~~ 214 (215)
T cd00714 152 RLEGAYALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRRVIYLEDGDIAV 214 (215)
T ss_pred HhccceEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCCEEe
Confidence 4899999999998764 9999999 599999986 678999999999999999999999998864
No 31
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.01 E-value=2.6e-09 Score=112.43 Aligned_cols=116 Identities=25% Similarity=0.321 Sum_probs=80.4
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEec---CCeEEEecccchhhhc-cCccEEeCCCcEEEecCCeEEEe-
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL---DGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLRRW- 75 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~---~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~~~~~~y- 75 (456)
+|+|+|||++.+. ++++++|||+|+|||||+... ++.++||||.++|... ++.|+.|+||+++.++.+.++.+
T Consensus 188 ~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~~ 265 (500)
T PRK07349 188 RCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSFH 265 (500)
T ss_pred HhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEEe
Confidence 4899999999875 689999999999999998741 3579999999999765 56799999999998865443322
Q ss_pred eCCCCCCC---------CCCC---CCCcHHHHHHHHHHHHHHhhh--cCCCeEEecc
Q 012824 76 YNPPCYSE---------QIPS---NPYDPLVLRKAFEKAVVKRLM--TDVPFGVLLS 118 (456)
Q Consensus 76 ~~~~~~~~---------~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~~vgv~LS 118 (456)
+.+..... ..|+ ....+.+.|..+-+...+... .|.=+++..|
T Consensus 266 ~~~~~~~~~C~fE~vYfarpdS~~~g~~V~~~R~~~G~~La~~~~~~~DvVv~VP~s 322 (500)
T PRK07349 266 WAQEPQRKLCIFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDS 322 (500)
T ss_pred cccCCCcceeEEEeeeccCCCCccCCeEHHHHHHHHHHHHhhhcccCCcEEEEeccc
Confidence 21111000 1121 233467788887777765543 3444666666
No 32
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.00 E-value=1.2e-09 Score=106.05 Aligned_cols=135 Identities=21% Similarity=0.211 Sum_probs=87.2
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC---CCchHHHHHHH
Q 012824 90 YDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE---GSPDLKAAREV 166 (456)
Q Consensus 90 ~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~---~~~e~~~A~~v 166 (456)
...+++.+.|+++|+++..++ |.+.||||+||+++++++.+... ..+.++.+... ...|...|+++
T Consensus 4 ~~~~~l~~~l~~~v~~~~~~~--V~vglSGGiDSsvla~l~~~~~~---------~~~~~~~~~~~~~~~~~e~~~a~~~ 72 (250)
T TIGR00552 4 KYVEEIEDFLRGYVQKSGAKG--VVLGLSGGIDSAVVAALCVEALG---------EQNHALLLPHSVQTPEQDVQDALAL 72 (250)
T ss_pred hHHHHHHHHHHHHHHHhCCCC--EEEECCCcHHHHHHHHHHHHhhC---------CceEEEEECCccCCCHHHHHHHHHH
Confidence 346789999999999986554 56679999999999999887652 23333333221 12489999999
Q ss_pred HHHhCCCceEEEeChhhHHHHHHHHHHhh-ccCCcc---cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 012824 167 ADYLGTRHHEFHFTVQEGIDALEEVIYHI-ETYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 167 A~~lg~~h~~~~~~~~~~~~~l~~~i~~~-e~~~~~---~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~ 238 (456)
|+.+|++|+++.+++.. ..+....... +..+.. .+.+-+-+..+...|++.|+.++-||+.. |.+.||.
T Consensus 73 a~~lgi~~~~i~i~~~~--~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~-E~~~G~~ 145 (250)
T TIGR00552 73 AEPLGINYKNIDIAPIA--ASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKS-ELMLGYF 145 (250)
T ss_pred HHHhCCeEEEEcchHHH--HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHH-HHhhCCe
Confidence 99999999988765532 2111100000 000000 01111335567778888999999999996 5566763
No 33
>PRK14561 hypothetical protein; Provisional
Probab=98.99 E-value=2.5e-09 Score=99.82 Aligned_cols=106 Identities=24% Similarity=0.290 Sum_probs=75.3
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEV 191 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~ 191 (456)
+++++||||+||+++++++.+... ..+.+|+.++ .+|..+|+++|+.+|++|+.+.++.+. .+...+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~~~---------v~a~t~~~g~--~~e~~~a~~~a~~lGi~~~~v~~~~~~-~~~~~~~ 69 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERFYD---------VELVTVNFGV--LDSWKHAREAAKALGFPHRVLELDREI-LEKAVDM 69 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhcCC---------eEEEEEecCc--hhHHHHHHHHHHHhCCCEEEEECCHHH-HHHHHHH
Confidence 489999999999999998865410 2345666665 358999999999999999999988754 5555666
Q ss_pred HHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhh
Q 012824 192 IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 192 i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
++..+.|...+ ..+..+++...+ .|+.+|.+|.-.|.+
T Consensus 70 ~~~~~~P~~~~--~~l~~~~l~~~a--~g~~~Ia~G~n~DD~ 107 (194)
T PRK14561 70 IIEDGYPNNAI--QYVHEHALEALA--EEYDVIADGTRRDDR 107 (194)
T ss_pred HHHcCCCCchh--HHHHHHHHHHHH--cCCCEEEEEecCCCc
Confidence 66655443211 122334444433 789999999999984
No 34
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.98 E-value=6.8e-09 Score=108.86 Aligned_cols=123 Identities=24% Similarity=0.300 Sum_probs=84.3
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-cCccEEeCCCcEEEecCCeEEE--eeC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLRR--WYN 77 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~~~~~~--y~~ 77 (456)
+|+|+|||+++|. ++++++|||+|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.+.++. +..
T Consensus 163 ~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~~~~~ 239 (471)
T PRK06781 163 KVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRFTN 239 (471)
T ss_pred hCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEEecCc
Confidence 5899999999995 68999999999999999986 6789999999999854 3568889999999886544332 222
Q ss_pred CCCCCC--------CCCC---CCCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHH
Q 012824 78 PPCYSE--------QIPS---NPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAV 129 (456)
Q Consensus 78 ~~~~~~--------~~~~---~~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaal 129 (456)
+..... ..|+ ....+.+.|..+-+...+....+.. .+.|=-||+..+|.
T Consensus 240 ~~~~~~C~fE~vYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D---~vv~VP~s~~~~A~ 299 (471)
T PRK06781 240 EVDHAICSMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAPIEAD---VVTGVPDSSISAAI 299 (471)
T ss_pred CcccccceEEEEEecCCCceeCCEEHHHHHHHHHHHHhhhCCCCCc---EEEEcChhHHHHHH
Confidence 111000 1121 1234677887777777766543322 23444567776653
No 35
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=98.98 E-value=9.7e-10 Score=106.52 Aligned_cols=63 Identities=27% Similarity=0.334 Sum_probs=56.4
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc----cCccEEeCCCcEEE
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD----CERFISFPPGHIYS 66 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~----~~~I~~lpPG~~~~ 66 (456)
+|+|+|||+++|. +.++++|||+|+|||||+.. ++.++||||.++|... .+.+..++||+++.
T Consensus 182 ~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~ 248 (249)
T cd01907 182 DLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNAKVWEPRPGEYVI 248 (249)
T ss_pred cCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchheEecCCCCceEe
Confidence 5899999999986 56999999999999999986 6789999999999977 57899999999874
No 36
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=98.98 E-value=9.8e-10 Score=103.83 Aligned_cols=65 Identities=43% Similarity=0.682 Sum_probs=58.4
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhcc-CccEEeCCCcEE
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDC-ERFISFPPGHIY 65 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~-~~I~~lpPG~~~ 65 (456)
+++|.|+|+++|..+++++++||++|.+||||....++.++||||.+++.... +.+..++||+++
T Consensus 155 ~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 155 RLDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred hCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 37899999999998899999999999999999985357899999999998765 789999999863
No 37
>PRK13980 NAD synthetase; Provisional
Probab=98.98 E-value=4.4e-09 Score=102.95 Aligned_cols=134 Identities=25% Similarity=0.247 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC--CchHHHHHHHHHH
Q 012824 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADY 169 (456)
Q Consensus 92 ~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~e~~~A~~vA~~ 169 (456)
.+.+...|++.|++.- ...+.+.||||+||+++++++.+..+. .++.++++.... ..|...|+++|++
T Consensus 14 ~~~l~~~l~~~v~~~g--~~~vvv~lSGGiDSsv~a~l~~~~~~~--------~~v~av~~~~~~~~~~~~~~a~~la~~ 83 (265)
T PRK13980 14 REIIVDFIREEVEKAG--AKGVVLGLSGGIDSAVVAYLAVKALGK--------ENVLALLMPSSVSPPEDLEDAELVAED 83 (265)
T ss_pred HHHHHHHHHHHHHHcC--CCcEEEECCCCHHHHHHHHHHHHHhCc--------cceEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 3455566666665432 256889999999999999999886531 368888876543 3588999999999
Q ss_pred hCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 012824 170 LGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 170 lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~ 238 (456)
+|++|+++.+++ +.+.+...+...+......+.+.+-+..+...|++.|..|+-||+..+.+ -||.
T Consensus 84 lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~sE~~-~G~~ 149 (265)
T PRK13980 84 LGIEYKVIEITP--IVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNKSELL-LGYF 149 (265)
T ss_pred hCCCeEEEECHH--HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCHhHHH-hCCc
Confidence 999999887654 33333222211000000011112234456677888898888899886554 5553
No 38
>PLN02440 amidophosphoribosyltransferase
Probab=98.97 E-value=1.3e-09 Score=114.70 Aligned_cols=68 Identities=32% Similarity=0.473 Sum_probs=59.4
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-cCccEEeCCCcEEEecCC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQG 70 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~~ 70 (456)
+|+|+|||++||. ++++++|||+|+|||||+...++.++||||.++|... .+.|+.|+||+.+.++.+
T Consensus 153 ~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~ 221 (479)
T PLN02440 153 KLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKD 221 (479)
T ss_pred HhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECC
Confidence 4799999999995 5699999999999999987545679999999999875 678999999999988643
No 39
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=98.96 E-value=4.5e-09 Score=99.20 Aligned_cols=111 Identities=19% Similarity=0.302 Sum_probs=80.0
Q ss_pred cCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCC--chHHHHHHHHHHhCCCceEEEeChhhHHH
Q 012824 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVADYLGTRHHEFHFTVQEGID 186 (456)
Q Consensus 109 sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~e~~~A~~vA~~lg~~h~~~~~~~~~~~~ 186 (456)
+-..+.+++|||+|||++|.++.+.++ .++.++|+..+-. .+.+-|+..|+.+|+.|..+.++.-+
T Consensus 16 ~~~kv~vAfSGGvDSslLa~la~~~lG---------~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~--- 83 (269)
T COG1606 16 EKKKVVVAFSGGVDSSLLAKLAKEALG---------DNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD--- 83 (269)
T ss_pred hcCeEEEEecCCccHHHHHHHHHHHhc---------cceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc---
Confidence 334799999999999999999988774 5788999876643 37889999999999999998865422
Q ss_pred HHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhhccC
Q 012824 187 ALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEIFGG 236 (456)
Q Consensus 187 ~l~~~i~~~e~~~~~~i~~~~~~~-~l~~~a~~~g~~vvLsG~GgDElfgG 236 (456)
++..+. +...+.-+-...| .+-+.|.+.|.++|++|-.+|++|++
T Consensus 84 --~~~~~n---~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~ 129 (269)
T COG1606 84 --PEFKEN---PENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDY 129 (269)
T ss_pred --hhhccC---CCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCC
Confidence 222221 2111111111122 35677888899999999999999973
No 40
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.93 E-value=2.7e-09 Score=106.68 Aligned_cols=82 Identities=28% Similarity=0.304 Sum_probs=67.3
Q ss_pred CCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC----CchHHHHH
Q 012824 89 PYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG----SPDLKAAR 164 (456)
Q Consensus 89 ~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~----~~e~~~A~ 164 (456)
++..+.+++.|+++|++|+.++ ++++.||||+|||++++++.+... ..+++++.++. .+|..+|+
T Consensus 13 ~~~~e~i~~~l~~~V~~~~~~~-~VvVgLSGGIDSSvvaaLa~~a~g----------~~~v~av~~~~~~s~~~e~~~A~ 81 (326)
T PRK00876 13 AAEAERIRAAIREQVRGTLRRR-GVVLGLSGGIDSSVTAALCVRALG----------KERVYGLLMPERDSSPESLRLGR 81 (326)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-CEEEEccCCHHHHHHHHHHHHhhC----------CCcEEEEEecCCCCChHHHHHHH
Confidence 3456889999999999998877 899999999999999999987652 23455555542 35899999
Q ss_pred HHHHHhCCCceEEEeCh
Q 012824 165 EVADYLGTRHHEFHFTV 181 (456)
Q Consensus 165 ~vA~~lg~~h~~~~~~~ 181 (456)
++|+++|++|+.+.+++
T Consensus 82 ~lA~~LGi~~~~i~i~~ 98 (326)
T PRK00876 82 EVAEHLGVEYVVEDITP 98 (326)
T ss_pred HHHHHcCCCEEEEECch
Confidence 99999999999998765
No 41
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=98.91 E-value=3.5e-09 Score=110.69 Aligned_cols=116 Identities=25% Similarity=0.328 Sum_probs=80.6
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhh-ccCccEEeCCCcEEEecCCeEEEe-eCC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSD-DCERFISFPPGHIYSSKQGGLRRW-YNP 78 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~-~~~~I~~lpPG~~~~~~~~~~~~y-~~~ 78 (456)
+|+|+|+|+++|. ++++++|||+|+|||||+.. ++.++||||.++|.. ..+.++.|+||+.+.++.+.++.+ +.+
T Consensus 154 ~l~G~falvi~~~--~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~~~~~~ 230 (442)
T TIGR01134 154 RVRGAYALVIMIG--DGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLESRLFAN 230 (442)
T ss_pred HhCccceEEEEEC--CEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEEEeccC
Confidence 4799999999975 68999999999999999986 678999999999975 367899999999998875544321 111
Q ss_pred CCCCC--------CCCC---CCCcHHHHHHHHHHHHHHhhh--cCCCeEEeccC
Q 012824 79 PCYSE--------QIPS---NPYDPLVLRKAFEKAVVKRLM--TDVPFGVLLSG 119 (456)
Q Consensus 79 ~~~~~--------~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~~vgv~LSG 119 (456)
..... ..|+ ....+-+.|..+-+...+... .|.=++|..||
T Consensus 231 ~~~~~c~fe~vYfarpds~~~g~~v~~~R~~~g~~La~~~~~~~D~Vv~VP~sg 284 (442)
T TIGR01134 231 TPRAPCIFEYVYFARPDSVIDGISVYKARKRMGEKLARESPVEADVVIPVPDSG 284 (442)
T ss_pred CCCcceEEEEEEecCCcceECCeEHHHHHHHHHHHHHHhcCCCCEEEEEccCCH
Confidence 10000 1121 123456677777777666543 23345666663
No 42
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.89 E-value=8.1e-09 Score=96.82 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=75.2
Q ss_pred eEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--CCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHH
Q 012824 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE 190 (456)
Q Consensus 113 vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~ 190 (456)
|.+++|||+||++++.++.+... .++.++++... ...|...++++|+++|++|+.+.++... ...
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~---------~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~--- 67 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG---------DRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPE--- 67 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC---------CcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHH---
Confidence 47899999999999999987642 25777777543 2358899999999999999998876321 111
Q ss_pred HHHhhccCCcccccchHH-HHHHHHHHHhCCCcEEEEcCchhhhccCC
Q 012824 191 VIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIFGGY 237 (456)
Q Consensus 191 ~i~~~e~~~~~~i~~~~~-~~~l~~~a~~~g~~vvLsG~GgDElfgGy 237 (456)
+.. . ...++..+... +-.+.+.+++.|+.++++|+.+|+.+.++
T Consensus 68 -~~~-~-~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~ 112 (202)
T cd01990 68 -FAK-N-PPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYR 112 (202)
T ss_pred -Hhc-C-CCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccC
Confidence 111 1 11111112222 23456778889999999999999998764
No 43
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=98.87 E-value=5.1e-09 Score=114.14 Aligned_cols=68 Identities=29% Similarity=0.576 Sum_probs=60.9
Q ss_pred CcceeEEEEEEECCC-CEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeE
Q 012824 1 MLDGMFSFVLLDTRD-KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGL 72 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~-~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~ 72 (456)
+|+|+|||++||..+ ++++++||+ |||||+.. ++.++||||+++|......+..|+||+++.++...+
T Consensus 153 ~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~i~~~~~ 221 (604)
T PRK00331 153 RLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTRRVIYLEDGEIAVLTRDGV 221 (604)
T ss_pred hccCeeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCeEEEEECCeE
Confidence 589999999999886 899999996 99999986 678999999999999999999999999998864444
No 44
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=98.86 E-value=4.8e-09 Score=110.26 Aligned_cols=69 Identities=28% Similarity=0.456 Sum_probs=59.7
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-cCccEEeCCCcEEEecCCeE
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGL 72 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~~~~ 72 (456)
+|+|+|++++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.+.+
T Consensus 168 ~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~ 237 (469)
T PRK05793 168 AIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGI 237 (469)
T ss_pred HhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCce
Confidence 4789999999985 68999999999999999986 6789999999999864 36788999999998865433
No 45
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.85 E-value=4.4e-09 Score=111.54 Aligned_cols=68 Identities=25% Similarity=0.311 Sum_probs=57.3
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEec---CCeEEEecccchhhhc-cCccEEeCCCcEEEecC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL---DGSIWFASEMKALSDD-CERFISFPPGHIYSSKQ 69 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~---~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~ 69 (456)
+|+|+|+++++.. .++++++|||+|+|||||+..+ ++.++||||.++|... .+.|+.|+||+.+.++.
T Consensus 162 ~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~ 233 (501)
T PRK09246 162 RVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITE 233 (501)
T ss_pred hcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEEC
Confidence 4789999998843 4579999999999999999752 3479999999999875 46799999999998864
No 46
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.82 E-value=2e-08 Score=101.90 Aligned_cols=112 Identities=21% Similarity=0.188 Sum_probs=78.7
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC------------CchHHHHHHHHHHhCCCceEEEe
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG------------SPDLKAAREVADYLGTRHHEFHF 179 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~------------~~e~~~A~~vA~~lg~~h~~~~~ 179 (456)
+|++++|||+||++++.++.+.. ..+.++++.... ..|...|+++|+.+|++|+.+.+
T Consensus 2 kVlValSGGvDSsvla~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~ 71 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQG----------YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDF 71 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeC
Confidence 58999999999999999988643 467788775421 24788999999999999999988
Q ss_pred ChhhHHHHHHHHHHhh---ccCCcccccchHH--HHHHHHHHHhCCCcEEEEcCchhhhc
Q 012824 180 TVQEGIDALEEVIYHI---ETYDVTTIRASTP--MFLMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 180 ~~~~~~~~l~~~i~~~---e~~~~~~i~~~~~--~~~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
+.+...+.++..+... .++ .+++.+... ...+.+.|++.|++.+.||+.+|...
T Consensus 72 ~~~f~~~vi~~~~~~~~~g~tp-npc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~ 130 (346)
T PRK00143 72 EKEFWDRVIDYFLDEYKAGRTP-NPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD 130 (346)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC-CcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc
Confidence 6553333333333221 223 234433322 23566788889999999999998754
No 47
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=98.79 E-value=1e-08 Score=111.77 Aligned_cols=68 Identities=31% Similarity=0.556 Sum_probs=59.8
Q ss_pred CcceeEEEEEEECCC-CEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeE
Q 012824 1 MLDGMFSFVLLDTRD-KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGL 72 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~-~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~ 72 (456)
+|+|+|||++||..+ ++++++||+ |||||+.. ++.++||||.++|......+..|+||+++.++.+++
T Consensus 152 ~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~~~~~~~ 220 (607)
T TIGR01135 152 QLRGAYALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTRRVIYLEDGDIAILTRDGV 220 (607)
T ss_pred HhcCceEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCCEEEEeCCCeEEEEECCee
Confidence 489999999999876 469999995 99999985 678999999999999999999999999988765444
No 48
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.78 E-value=4.3e-08 Score=99.63 Aligned_cols=112 Identities=25% Similarity=0.228 Sum_probs=76.5
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC----------CCchHHHHHHHHHHhCCCceEEEeCh
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE----------GSPDLKAAREVADYLGTRHHEFHFTV 181 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~----------~~~e~~~A~~vA~~lg~~h~~~~~~~ 181 (456)
+|++++|||+|||++++++.+.. .++.++++... ...|...|+++|+.+|++|+.+.++.
T Consensus 1 kVlValSGGvDSsvla~lL~~~g----------~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~ 70 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQG----------YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEK 70 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcH
Confidence 47899999999999999998753 35555554221 12578999999999999999999876
Q ss_pred hhHHHHHHHHHHhh---ccCCcccccchHH--HHHHHHHHHhCCCcEEEEcCchhhhc
Q 012824 182 QEGIDALEEVIYHI---ETYDVTTIRASTP--MFLMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 182 ~~~~~~l~~~i~~~---e~~~~~~i~~~~~--~~~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
+...+.+...+... .+|+ +++.+... ...+.+.|.+.|+..+.||+-+|...
T Consensus 71 ~f~~~v~~~~i~~~~~g~tpn-pc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~ 127 (349)
T cd01998 71 EYWEKVFEPFLEEYKKGRTPN-PDILCNKEIKFGALLDYAKKLGADYIATGHYARIEE 127 (349)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-chHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee
Confidence 54333333333322 1232 33333322 22456778889999999999998754
No 49
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.75 E-value=5.4e-08 Score=89.49 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=75.3
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCC--CchHHHHHHHHHHhCCCceEEEeChhhHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEG--SPDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~--~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~ 187 (456)
++.+.+|||.||++++.++.+...... .+.++.++++. ... ..+..+++++|+.+|++++.+.++.+ + ..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~ 74 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYP----YGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEE-Y-TD 74 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcC----CCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhh-c-ch
Confidence 478999999999999999987643100 01256677664 332 24788999999999999998887632 2 00
Q ss_pred HHHHHHhhccCCcccccch-HHHHHHHHHHHhCCCcEEEEcCchhhhcc
Q 012824 188 LEEVIYHIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (456)
Q Consensus 188 l~~~i~~~e~~~~~~i~~~-~~~~~l~~~a~~~g~~vvLsG~GgDElfg 235 (456)
... .........+..+. .-+..+.+.+++.|++++++|+.+|++..
T Consensus 75 ~~~--~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~e 121 (185)
T cd01993 75 DIE--VKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAE 121 (185)
T ss_pred hhh--hhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHH
Confidence 000 00111111111122 33456778888999999999999998754
No 50
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.73 E-value=1.8e-07 Score=88.31 Aligned_cols=156 Identities=23% Similarity=0.318 Sum_probs=80.3
Q ss_pred eEEeccCcccHHHHHHHHHHHhchhhhhhhcCCccccee--ccCCCCchHHHHHHHHHHhCC-CceEEEeC-hhhHH-HH
Q 012824 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFC--IGLEGSPDLKAAREVADYLGT-RHHEFHFT-VQEGI-DA 187 (456)
Q Consensus 113 vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfs--ig~~~~~e~~~A~~vA~~lg~-~h~~~~~~-~~~~~-~~ 187 (456)
+.++||||+||+++++.+.+.. ..+.+++ +|.....|.+.|+++++++|+ +|+++.++ -.++. ..
T Consensus 2 avvl~SGG~DSt~~l~~~~~~~----------~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~ 71 (209)
T PF06508_consen 2 AVVLFSGGLDSTTCLYWAKKEG----------YEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSA 71 (209)
T ss_dssp EEEE--SSHHHHHHHHHHHHH-----------SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcC----------CeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCc
Confidence 5689999999999999888765 3566555 465655699999999999999 99999887 22211 11
Q ss_pred HH-HH--HHh----hccCCcccc--cchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCccccCCCChHHHHHHHHHHHH
Q 012824 188 LE-EV--IYH----IETYDVTTI--RASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIK 258 (456)
Q Consensus 188 l~-~~--i~~----~e~~~~~~i--~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~~~~p~~~~~~~e~~~~~~ 258 (456)
|. +- +.. .+....+.+ |+.+.+-+.+..|.+.|+..|+.|--+++ +.||+... .+|.+.+.+.+.
T Consensus 72 L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D-~~~ypDc~-----~~F~~~~~~~~~ 145 (209)
T PF06508_consen 72 LTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAED-ASGYPDCR-----PEFIDAMNRLLN 145 (209)
T ss_dssp HHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-S-TT--GGGS-----HHHHHHHHHHHH
T ss_pred ccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCc-cCCCCCCh-----HHHHHHHHHHHH
Confidence 11 10 111 011111222 33222223345566779999999998776 46777543 234433322211
Q ss_pred hchhhhhhhhccccccCCceecCCCCCH---HHHHHHhcCC
Q 012824 259 ALHLYDCLRANKSTSAWGVEARVPFLDK---EFINTAMSID 296 (456)
Q Consensus 259 ~l~~~dllr~dr~~~a~gle~r~PflD~---~lve~a~slP 296 (456)
. .....+.+..||++. +++..+..+.
T Consensus 146 ~------------~~~~~v~i~~P~~~~tK~eiv~~~~~lg 174 (209)
T PF06508_consen 146 L------------GEGGPVRIETPLIDLTKAEIVKLGVELG 174 (209)
T ss_dssp H------------HHTS--EEE-TTTT--HHHHHHHHHHTT
T ss_pred h------------cCCCCEEEEecCCCCCHHHHHHHHHHcC
Confidence 1 134568889999885 5666666554
No 51
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.73 E-value=5.7e-08 Score=92.77 Aligned_cols=146 Identities=20% Similarity=0.275 Sum_probs=87.9
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--CCchHHHHHHHHHHhCCC-ceEEEeChhhHH--H
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTR-HHEFHFTVQEGI--D 186 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~e~~~A~~vA~~lg~~-h~~~~~~~~~~~--~ 186 (456)
++.|++|||+||+++++++.+.. ..+.++++.+. ...|.+.|+++|+++|++ |+++.++.-..+ .
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~----------~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s 72 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQY----------DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVS 72 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcC----------CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 58899999999999999886542 35667666543 346999999999999996 988876631100 1
Q ss_pred HHHHH---HH--hh--ccCCcccccchHHHH-HHH-HHHHhCCCcEEEEcCchhhhccCCccccCCCChHHHHHHHHHHH
Q 012824 187 ALEEV---IY--HI--ETYDVTTIRASTPMF-LMS-RKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKI 257 (456)
Q Consensus 187 ~l~~~---i~--~~--e~~~~~~i~~~~~~~-~l~-~~a~~~g~~vvLsG~GgDElfgGy~~~~~~p~~~~~~~e~~~~~ 257 (456)
.|.+- +. .. +....+.+.+--..+ .++ ..|.+.|++.|+.|--+|+. +||+. .+.+|.+.+.+.+
T Consensus 73 ~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~-~~YpD-----cr~~Fi~A~~~~~ 146 (231)
T PRK11106 73 SLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDF-SGYPD-----CRDEFVKALNHAV 146 (231)
T ss_pred ccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcC-CCCCC-----CCHHHHHHHHHHH
Confidence 11100 00 00 111112222211122 233 35778899999999999885 67764 2344544332211
Q ss_pred HhchhhhhhhhccccccCCceecCCCCC
Q 012824 258 KALHLYDCLRANKSTSAWGVEARVPFLD 285 (456)
Q Consensus 258 ~~l~~~dllr~dr~~~a~gle~r~PflD 285 (456)
+.++..++.+..||++
T Consensus 147 ------------~~~~~~~i~I~aPl~~ 162 (231)
T PRK11106 147 ------------SLGMAKDIRFETPLMW 162 (231)
T ss_pred ------------HhccCCCcEEEecCCC
Confidence 1123345899999987
No 52
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=6.9e-08 Score=96.48 Aligned_cols=110 Identities=25% Similarity=0.250 Sum_probs=75.6
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CC-C------CchHHHHHHHHHHhCCCceEEEeC
Q 012824 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LE-G------SPDLKAAREVADYLGTRHHEFHFT 180 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~-~------~~e~~~A~~vA~~lg~~h~~~~~~ 180 (456)
...|.|++|||+|||+.|.++.++. ..|..+++. +. + ..|...|++||+.||++|+.+.+.
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~QG----------yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~ 72 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQG----------YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFE 72 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHcC----------CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchH
Confidence 4578999999999999999999875 456655542 21 1 147889999999999999999986
Q ss_pred hhhHHHH-HHHHHHh---hccCCcccccch-HHHH-HHHHHHHhCCCcEEEEcCchh
Q 012824 181 VQEGIDA-LEEVIYH---IETYDVTTIRAS-TPMF-LMSRKIKSLGVKMVISGEGSD 231 (456)
Q Consensus 181 ~~~~~~~-l~~~i~~---~e~~~~~~i~~~-~~~~-~l~~~a~~~g~~vvLsG~GgD 231 (456)
.+ +.+. +...+.. -++|+ |++.+. ...+ .+.+.|.+.|+.-+.||+.+-
T Consensus 73 ~~-y~~~V~~~f~~~Y~~G~TPN-Pci~CN~~iKF~~~l~~a~~lgad~iATGHYar 127 (356)
T COG0482 73 KE-FWNKVFEYFLAEYKAGKTPN-PCILCNKEIKFKALLDYAKELGADYIATGHYAR 127 (356)
T ss_pred HH-HHHHHHHHHHHHHhCCCCCC-cchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEe
Confidence 54 3332 2222211 13443 455552 2233 456778889999999999863
No 53
>PTZ00323 NAD+ synthase; Provisional
Probab=98.70 E-value=2.2e-07 Score=91.78 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhhc--CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC-CCchHHHHHHHHHHhC
Q 012824 95 LRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPDLKAAREVADYLG 171 (456)
Q Consensus 95 lr~~L~~AV~~rl~s--d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~e~~~A~~vA~~lg 171 (456)
+.+...+.++.++.. ...+.+.||||+||+++++++.+..++.+. -...+.++..... ...+...|+++|+.+|
T Consensus 29 ~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~---~~~~~~~v~~P~~ss~~~~~~A~~la~~lG 105 (294)
T PTZ00323 29 WIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNS---PIQKNVGLCQPIHSSAWALNRGRENIQACG 105 (294)
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccC---CceEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 333344455555443 567899999999999999999987643100 0011333333322 2257899999999999
Q ss_pred CCceEEEeChhhHHHHHHHHHHhhccCCc---------ccccchHHHHHHHHHHHhCCCcEEEEcC-chhhh-ccCCcc
Q 012824 172 TRHHEFHFTVQEGIDALEEVIYHIETYDV---------TTIRASTPMFLMSRKIKSLGVKMVISGE-GSDEI-FGGYLY 239 (456)
Q Consensus 172 ~~h~~~~~~~~~~~~~l~~~i~~~e~~~~---------~~i~~~~~~~~l~~~a~~~g~~vvLsG~-GgDEl-fgGy~~ 239 (456)
++|+++.+++ +.+.+...+......+. ..+|+ ...|.+++.+.+.|...++.|- ..||+ .-||..
T Consensus 106 i~~~~idi~~--l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~-~~lY~la~~~~~~g~~~lV~GT~N~sE~~~~Gy~t 181 (294)
T PTZ00323 106 ATEVTVDQTE--IHTQLSSLVEKAVGIKGGAFARGQLRSYMRT-PVAFYVAQLLSQEGTPAVVMGTGNFDEDGYLGYFC 181 (294)
T ss_pred CcEEEEECcH--HHHHHHHHHhhhhcccchhhHHHhHHHHHHh-HHHHHHHHHHhhcCCCeEEECCCCchhhhHhchHh
Confidence 9999998775 33333333322110110 01222 2347777777777877777777 66775 347643
No 54
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.69 E-value=9.4e-08 Score=97.61 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=75.4
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC--CchHHHHHHHHHHhCC-CceEEEeChhhHHH
Q 012824 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYLGT-RHHEFHFTVQEGID 186 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~e~~~A~~vA~~lg~-~h~~~~~~~~~~~~ 186 (456)
..++.+++|||+|||+++.++.+.. ..+.++++.... ..|...|+++|+.+|+ +|+++.+..+..-+
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~G----------~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~ 71 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQERG----------YAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEG 71 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHcC----------CcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHH
Confidence 3578999999999999999987642 468888875543 4689999999999998 59888877654333
Q ss_pred HHHHHHHh----h-ccCCcccccchHHHHHHHHHHHhCCCcEEEEcCc
Q 012824 187 ALEEVIYH----I-ETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 229 (456)
Q Consensus 187 ~l~~~i~~----~-e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~G 229 (456)
.+...+.. - .+|..++.|+. -.-.+.+.|++.|++.+.+|.-
T Consensus 72 vi~p~i~aNa~y~G~yPl~~~nR~~-~~~~l~e~A~~~G~~~IA~G~t 118 (400)
T PRK04527 72 FVKPLVWAGEGYQGQYPLLVSDRYL-IVDAALKRAEELGTRIIAHGCT 118 (400)
T ss_pred HHHHHHhcchhhcCCCCCccccHHH-HHHHHHHHHHHCCCCEEEecCc
Confidence 44434421 1 23432222221 1224567788899999999994
No 55
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.68 E-value=8.2e-08 Score=97.60 Aligned_cols=112 Identities=18% Similarity=0.163 Sum_probs=74.5
Q ss_pred hcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC---C-chHHHHHHHHHHhCCCceEEEeChhh
Q 012824 108 MTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG---S-PDLKAAREVADYLGTRHHEFHFTVQE 183 (456)
Q Consensus 108 ~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~---~-~e~~~A~~vA~~lg~~h~~~~~~~~~ 183 (456)
..+.+|.+++|||+||++++.++.+.. .++.++++...+ + .|...|+++|+.+|++|+.+.++.+
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G----------~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~- 71 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAG----------YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKV- 71 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcC----------CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHH-
Confidence 345689999999999999999998753 467777765321 2 3688999999999999998876532
Q ss_pred HHHHH-HHHHHh---hccCCcccccchHHH-H-HHHHHHHhCCCcEEEEcCchh
Q 012824 184 GIDAL-EEVIYH---IETYDVTTIRASTPM-F-LMSRKIKSLGVKMVISGEGSD 231 (456)
Q Consensus 184 ~~~~l-~~~i~~---~e~~~~~~i~~~~~~-~-~l~~~a~~~g~~vvLsG~GgD 231 (456)
+.+.+ ...+.. -.++. +++.+..-+ | .+.+.|.+.|++.+.||+.+.
T Consensus 72 f~~~v~~~f~~~y~~g~tpn-pC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 72 FRKQIIDYFIDEYMSGHTPV-PCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHHhhhhhHHhccCCCC-HHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 22211 111111 11222 233222222 2 456778889999999999984
No 56
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.65 E-value=3.1e-08 Score=100.13 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=67.7
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCC-----------chHHHHHHHHHHhCCCceEEEeC
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-----------PDLKAAREVADYLGTRHHEFHFT 180 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~-----------~e~~~A~~vA~~lg~~h~~~~~~ 180 (456)
.|.|.+|||+|||+.|+++.+.. .++..+++...+. .|...|++||++||++|+.+.+.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G----------~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~ 71 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQG----------YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLR 71 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-----------EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETH
T ss_pred eEEEEccCCHHHHHHHHHHHhhc----------ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChH
Confidence 48899999999999999998864 5677777644322 36889999999999999999986
Q ss_pred hhhHHHHHHHHHHh---hccCCcccccchHH--HHHHHHHHHh-CCCcEEEEcCchhhhcc
Q 012824 181 VQEGIDALEEVIYH---IETYDVTTIRASTP--MFLMSRKIKS-LGVKMVISGEGSDEIFG 235 (456)
Q Consensus 181 ~~~~~~~l~~~i~~---~e~~~~~~i~~~~~--~~~l~~~a~~-~g~~vvLsG~GgDElfg 235 (456)
.+-.-+.+..++.. -.||+ |++.+... .-.+.+.|.+ .|+..+-||+.|--...
T Consensus 72 ~~f~~~Vi~~f~~~Y~~G~TPN-Pcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~ 131 (356)
T PF03054_consen 72 EEFWEEVIEPFLDEYRKGRTPN-PCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKD 131 (356)
T ss_dssp HHHHHHTHHHHHHHHHTT-----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCC-hHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEee
Confidence 54322334433322 13453 34433211 1246777888 89999999999865544
No 57
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.64 E-value=5.6e-08 Score=91.03 Aligned_cols=146 Identities=27% Similarity=0.349 Sum_probs=88.9
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCccccee--ccCCCCchHHHHHHHHHHhCCCceEEEeChhhHH--HH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFC--IGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGI--DA 187 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfs--ig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~--~~ 187 (456)
...+.||||+||+++++.+.+.. ..+++.| +|.+...|.+.|+++|+.||++||++.++.-.-+ ..
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~----------~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~sa 73 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSA 73 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcC----------CEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCc
Confidence 35689999999999999998865 3565555 5666667999999999999999998876532101 01
Q ss_pred HH-H---HHHhh---ccCCccc--ccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCccccCCCChHHHHHHHHHHHH
Q 012824 188 LE-E---VIYHI---ETYDVTT--IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIK 258 (456)
Q Consensus 188 l~-~---~i~~~---e~~~~~~--i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~~~~p~~~~~~~e~~~~~~ 258 (456)
|. + +.... ++...+. .|+.+.+.+.+-.|...|++-|++|--+.+. .||+... .+|.+.+...
T Consensus 74 Ltd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~-sgYPDcr-----pefi~a~~~~-- 145 (222)
T COG0603 74 LTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDF-SGYPDCR-----PEFIEALNEA-- 145 (222)
T ss_pred CcCCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEeccccc-CCCCCCC-----HHHHHHHHHH--
Confidence 11 1 11100 1111112 2333333344456677899999999888774 5687543 2343322111
Q ss_pred hchhhhhhhhccccccCCce-ecCCCCC
Q 012824 259 ALHLYDCLRANKSTSAWGVE-ARVPFLD 285 (456)
Q Consensus 259 ~l~~~dllr~dr~~~a~gle-~r~PflD 285 (456)
=..++..+++ +..|+.+
T Consensus 146 ----------~~l~~~~~~~~i~aPl~~ 163 (222)
T COG0603 146 ----------LNLGTEKGVRIIHAPLME 163 (222)
T ss_pred ----------HHhhccCCccEEeCCeee
Confidence 1235556666 4778765
No 58
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=98.63 E-value=6.1e-08 Score=106.33 Aligned_cols=72 Identities=31% Similarity=0.538 Sum_probs=62.6
Q ss_pred CcceeEEEEEEECC-CCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeEEEee
Q 012824 1 MLDGMFSFVLLDTR-DKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWY 76 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~-~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~~~y~ 76 (456)
+|+|+|||++||.. .++++++||+ |||||+.. ++.++||||.++|......+..|+||+++.++.++++.|.
T Consensus 183 ~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pGei~~i~~~~~~~~~ 255 (640)
T PTZ00295 183 RLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNEYISLKDGEIAELSLENVNDLY 255 (640)
T ss_pred HhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcEEEEeCCCeEEEEECCeEEEEe
Confidence 48999999999976 5899999997 99999986 6789999999999998888889999999988766665543
No 59
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.62 E-value=2.3e-07 Score=89.47 Aligned_cols=134 Identities=22% Similarity=0.248 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--CCchHHHHHHHHHHh
Q 012824 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYL 170 (456)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~e~~~A~~vA~~l 170 (456)
+.+...|++-+++. ....+.+.||||+||+++|+++.+.++. .++.++.+... ...|...|+++|+.+
T Consensus 3 ~~l~~~L~~~~~~~--g~~~vVvglSGGiDSav~A~La~~Alg~--------~~v~~v~mp~~~~~~~~~~~A~~la~~l 72 (242)
T PF02540_consen 3 EALVDFLRDYVKKS--GAKGVVVGLSGGIDSAVVAALAVKALGP--------DNVLAVIMPSGFSSEEDIEDAKELAEKL 72 (242)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEETSSHHHHHHHHHHHHHHGG--------GEEEEEEEESSTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEcCCCCCHHHHHHHHHHHhhh--------ccccccccccccCChHHHHHHHHHHHHh
Confidence 45556666666553 2356889999999999999999988742 35777776422 224788999999999
Q ss_pred CCCceEEEeChhhHHHHHHHHHHhhc-cCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCcc
Q 012824 171 GTRHHEFHFTVQEGIDALEEVIYHIE-TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (456)
Q Consensus 171 g~~h~~~~~~~~~~~~~l~~~i~~~e-~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~ 239 (456)
|+++.++.+++ ..+.+.+.+.... ......+.+-+-|-.+...+...+ .+++....-+|++.||..
T Consensus 73 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~-~lVlgT~N~sE~~~Gy~T 139 (242)
T PF02540_consen 73 GIEYIVIDIDP--IFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYN-YLVLGTGNKSELLLGYFT 139 (242)
T ss_dssp TSEEEEEESHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEBE--CHHHHHHTCSH
T ss_pred CCCeeccchHH--HHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccc-eEEecCCcHHHhhcCccc
Confidence 99999988754 3343333222111 000001111111222333344444 355554556788888854
No 60
>PRK13981 NAD synthetase; Provisional
Probab=98.58 E-value=4.3e-07 Score=97.79 Aligned_cols=138 Identities=21% Similarity=0.244 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHhhhc--CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCC--chHHHHHHHH
Q 012824 92 PLVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVA 167 (456)
Q Consensus 92 ~~~lr~~L~~AV~~rl~s--d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~e~~~A~~vA 167 (456)
.+++.+.+...++..+.. ...+.+.||||+||+++++++.+..+. .++.++++....+ .+...|+++|
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~--------~~v~~~~~p~~~~~~~~~~~a~~~a 331 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA--------ERVRAVMMPSRYTSEESLDDAAALA 331 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc--------CcEEEEECCCCCCCHHHHHHHHHHH
Confidence 355666666666666543 357899999999999999999887632 3588888765433 4788999999
Q ss_pred HHhCCCceEEEeChhhHHHHHHHHHHhh---ccCCcc--cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCccc
Q 012824 168 DYLGTRHHEFHFTVQEGIDALEEVIYHI---ETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (456)
Q Consensus 168 ~~lg~~h~~~~~~~~~~~~~l~~~i~~~---e~~~~~--~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~ 240 (456)
+.+|++|+++.+++ .++.+.+.+... +..+.. .+.+-+-+..++..+.+.|.-|+=||+- +|+.-||-..
T Consensus 332 ~~lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~-sE~~~Gy~t~ 406 (540)
T PRK13981 332 KNLGVRYDIIPIEP--AFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNK-SEMAVGYATL 406 (540)
T ss_pred HHcCCeEEEEECHH--HHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCcc-CHHHcCCeEe
Confidence 99999999988764 334433333221 111211 1111122334555566676656656665 6777888543
No 61
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.58 E-value=2.9e-07 Score=93.54 Aligned_cols=108 Identities=20% Similarity=0.209 Sum_probs=72.9
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccC-------C-----CCchHHHHHHHHHHhCCCceEEEe
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL-------E-----GSPDLKAAREVADYLGTRHHEFHF 179 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~-------~-----~~~e~~~A~~vA~~lg~~h~~~~~ 179 (456)
++.+++|||+||++++.++.+.. ..+.++++.. . ...|...|+++|+++|++|+.+.+
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~ 71 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQG----------YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNF 71 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcC----------CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 57899999999999999998753 4677777621 1 113788999999999999999887
Q ss_pred ChhhHHHHHHHHHHhh---ccCCcccccchHHH--HHHHHHHHhC-CCcEEEEcCch
Q 012824 180 TVQEGIDALEEVIYHI---ETYDVTTIRASTPM--FLMSRKIKSL-GVKMVISGEGS 230 (456)
Q Consensus 180 ~~~~~~~~l~~~i~~~---e~~~~~~i~~~~~~--~~l~~~a~~~-g~~vvLsG~Gg 230 (456)
+.+-.-+.+...+... .+|+ +++.+...+ ..+.+.|++. |+..+.||+.+
T Consensus 72 ~~~f~~~v~~~~~~~y~~g~tpn-pC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 72 QKEYWNKVFEPFIQEYKEGRTPN-PDILCNKFIKFGAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC-cchhhhHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 6542222222222221 2232 444443322 3456777775 99999999998
No 62
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.58 E-value=4.4e-07 Score=92.21 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=75.5
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHH
Q 012824 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~ 189 (456)
..+|.+++|||+||++++.++.+.. ..+.++++... ..|...|+++|+++|++|+.+.++.+-..+.+.
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~~~G----------~eV~av~~~~~-~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~ 73 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQEQG----------YEIVGVTMRVW-GDEPQDARELAARMGIEHYVADERVPFKDTIVK 73 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHcC----------CcEEEEEecCc-chhHHHHHHHHHHhCCCEEEEeChHHHHHHHHH
Confidence 4579999999999999999887643 46777777543 245678999999999999998877532112222
Q ss_pred HHHH--hhccCCcccccchHH--HHHHHHHHHhCCCcEEEEcCchhh
Q 012824 190 EVIY--HIETYDVTTIRASTP--MFLMSRKIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 190 ~~i~--~~e~~~~~~i~~~~~--~~~l~~~a~~~g~~vvLsG~GgDE 232 (456)
..+. .......+++.+... .-.+.+.|.+.|+..+.||+-++-
T Consensus 74 ~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~ 120 (362)
T PRK14664 74 NFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRL 120 (362)
T ss_pred HhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccc
Confidence 2221 111122244444322 224678888999999999999963
No 63
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.54 E-value=3.8e-07 Score=93.45 Aligned_cols=109 Identities=19% Similarity=0.164 Sum_probs=72.7
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEE-EeChhhHH-HHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEF-HFTVQEGI-DALE 189 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~-~~~~~~~~-~~l~ 189 (456)
++++++|||+|||+++.++.+... .++.++++......|...|+++|+.+|+.++++ .+.. ++. +.+.
T Consensus 4 kVvva~SGGlDSsvla~~l~e~lG---------~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~~-ef~~~~i~ 73 (399)
T PRK00509 4 KVVLAYSGGLDTSVIIKWLKETYG---------CEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLRE-EFVRDYVF 73 (399)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhhC---------CeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCHH-HHHHHhHH
Confidence 689999999999999999987532 468899887665578999999999999864444 4442 333 2233
Q ss_pred HHHHhh----ccCCcccccch-HHHHHHHHHHHhCCCcEEEEcCch
Q 012824 190 EVIYHI----ETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGS 230 (456)
Q Consensus 190 ~~i~~~----e~~~~~~i~~~-~~~~~l~~~a~~~g~~vvLsG~Gg 230 (456)
..+... ..+..++.-+- ...-.+.+.|++.|++++.+|.-+
T Consensus 74 ~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~ 119 (399)
T PRK00509 74 PAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTG 119 (399)
T ss_pred HHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 333321 12222222111 112235677888999999999876
No 64
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.54 E-value=5.2e-07 Score=90.12 Aligned_cols=109 Identities=20% Similarity=0.255 Sum_probs=70.1
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHH-HHhCCCceEEEeChhhHHHH
Q 012824 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVA-DYLGTRHHEFHFTVQEGIDA 187 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA-~~lg~~h~~~~~~~~~~~~~ 187 (456)
.++.+++|||+||++++.++.+..+ .++.++++. +....|...+.+.+ +++|++|+.+..+.. +++.
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~G---------~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~-fl~~ 86 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAIG---------DRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKER-FLSA 86 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHhC---------CCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHH-HHhh
Confidence 6799999999999999999987653 467777764 33345777776654 589999998887642 2232
Q ss_pred HHHHHHhhccCCccc-ccchHHHHHHHHHHHhCC-CcEEEEcCchhhh
Q 012824 188 LEEVIYHIETYDVTT-IRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 233 (456)
Q Consensus 188 l~~~i~~~e~~~~~~-i~~~~~~~~l~~~a~~~g-~~vvLsG~GgDEl 233 (456)
+.. ...+.... +....-...+.+.|++.| ++.+++|...|.+
T Consensus 87 l~~----v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~ 130 (311)
T TIGR00884 87 LKG----VTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDV 130 (311)
T ss_pred hcC----CCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhh
Confidence 221 10111000 000111223556677888 9999999988765
No 65
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.52 E-value=3e-07 Score=86.26 Aligned_cols=153 Identities=25% Similarity=0.337 Sum_probs=90.0
Q ss_pred EEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC--CchHHHHHHHHHHhCCCceEEEeChhhHHH--HHH
Q 012824 114 GVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYLGTRHHEFHFTVQEGID--ALE 189 (456)
Q Consensus 114 gv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~--~l~ 189 (456)
.++||||+||++++.++.+.. .++.++++.+.. ..|.+.|+++|+.+|++|+++.++.-..+. .+.
T Consensus 2 vv~lSGG~DSs~~~~~~~~~g----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~ 71 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKDEG----------YEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQLGGSALT 71 (201)
T ss_pred EEEeccHHHHHHHHHHHHHcC----------CcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhccccccccc
Confidence 589999999999999887642 468888876543 358899999999999999988876321100 000
Q ss_pred H---HHH-hhccCC---ccc--ccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCccccCCCChHHHHHHHHHHHHhc
Q 012824 190 E---VIY-HIETYD---VTT--IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKAL 260 (456)
Q Consensus 190 ~---~i~-~~e~~~---~~~--i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~~~~p~~~~~~~e~~~~~~~l 260 (456)
. .+. .....+ ... .++.+..-.+...|.+.|+..|++|.-.|++ +.|+.. +..|.+.+.. +
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~-~~~~d~-----~~~f~~~~~~----~ 141 (201)
T TIGR00364 72 DESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDF-SGYPDC-----RDEFVKAFNH----A 141 (201)
T ss_pred CCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcC-CCCCCC-----cHHHHHHHHH----H
Confidence 0 000 000000 000 1111222235577888999999999999885 556431 2334333221 1
Q ss_pred hhhhhhhhccccccCCceecCCCCCH---HHHHHHhc
Q 012824 261 HLYDCLRANKSTSAWGVEARVPFLDK---EFINTAMS 294 (456)
Q Consensus 261 ~~~dllr~dr~~~a~gle~r~PflD~---~lve~a~s 294 (456)
.. .....++.+..||++. ++++.+..
T Consensus 142 ~~--------~~~~~~~~i~~Pl~~~~K~eI~~la~~ 170 (201)
T TIGR00364 142 LN--------LGMLTPVKIRAPLMDLTKAEIVQLADE 170 (201)
T ss_pred HH--------hhcCCCeEEEECCcCCCHHHHHHHHHH
Confidence 10 1134558889999652 44444433
No 66
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.51 E-value=6.9e-07 Score=81.97 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=64.5
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCc----hHHHHHHHHHHhCCCceEEEeChhhHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSP----DLKAAREVADYLGTRHHEFHFTVQEGI 185 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~----e~~~A~~vA~~lg~~h~~~~~~~~~~~ 185 (456)
++.++||||+||++++.++.+.. .++.++++. +.... +...+.+.+..++.+|+...++..+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g----------~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 69 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRG----------IEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFF- 69 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcC----------CeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHH-
Confidence 36899999999999999998753 456666664 33332 23444444566787876555544331
Q ss_pred HHHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhh
Q 012824 186 DALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 186 ~~l~~~i~~~e~~~~~~i~~~~~~~-~l~~~a~~~g~~vvLsG~GgDE 232 (456)
...+.... .....++..+...++ .+.+.|.+.|++++++|+.+|.
T Consensus 70 -~~~~~~~~-~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D 115 (177)
T cd01712 70 -VQKEIYGY-GKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQ 115 (177)
T ss_pred -HHHHHHHh-CCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCccc
Confidence 11122221 222223333333333 4556778899999999997765
No 67
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.49 E-value=1.2e-06 Score=85.24 Aligned_cols=139 Identities=17% Similarity=0.167 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhh--cCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--CCchHHHHHHHHHHhCC
Q 012824 97 KAFEKAVVKRLM--TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGT 172 (456)
Q Consensus 97 ~~L~~AV~~rl~--sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~e~~~A~~vA~~lg~ 172 (456)
+.+.+.++..+. .-..+.+.||||+||+++++++.+..+..+..+. ...+..+.+.++ .+.+...|+.+|+.+|+
T Consensus 23 ~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~-~~~~~~~~l~mP~~~~~~~~da~~la~~lgi 101 (268)
T PRK00768 23 RRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETG-DDDYQFIAVRLPYGVQADEDDAQDALAFIQP 101 (268)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhccccc-CcceeEEEEECCCCCcCCHHHHHHHHHhcCC
Confidence 334444444443 2345789999999999999999887642210000 011334444444 23568899999999999
Q ss_pred -CceEEEeChhhHHHHHHHHHHhhcc-C-Cc--ccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCcc
Q 012824 173 -RHHEFHFTVQEGIDALEEVIYHIET-Y-DV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (456)
Q Consensus 173 -~h~~~~~~~~~~~~~l~~~i~~~e~-~-~~--~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~ 239 (456)
+|.++.+++ .++.+.+.+...+. . +. ..+.+-+-|-.++..|...|.-|+=||.- +|+.-||-.
T Consensus 102 ~~~~~i~I~~--~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N~-sE~~~Gy~T 170 (268)
T PRK00768 102 DRVLTVNIKP--AVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDHA-AEAVTGFFT 170 (268)
T ss_pred CeeEEEECHH--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCcc-cHHHhCcee
Confidence 788877654 44544443322000 1 10 00111112233444455566545555554 678888854
No 68
>PRK08349 hypothetical protein; Validated
Probab=98.47 E-value=1e-06 Score=82.49 Aligned_cols=110 Identities=17% Similarity=0.174 Sum_probs=65.4
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhC----CCce-EEEeChhhH-H
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLG----TRHH-EFHFTVQEG-I 185 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg----~~h~-~~~~~~~~~-~ 185 (456)
++.+++|||+||++.+.++.+.. .++.++++.. +..+...++++|+.++ ++|+ .+.++..+. .
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g----------~~v~av~~d~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 70 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRG----------VEVYPVHFRQ-DEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQG 70 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcC----------CeEEEEEEeC-CHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhH
Confidence 46799999999999999887643 4677887765 3456667777777764 7774 233332221 1
Q ss_pred HHHHHHHHhhccCCcccccchHHH-HHHHHHHHhCCCcEEEEcCchhhh
Q 012824 186 DALEEVIYHIETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 186 ~~l~~~i~~~e~~~~~~i~~~~~~-~~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
..+..+.. .+....+++.+...+ ..+.+.|.+.|+..|++|+-.|..
T Consensus 71 ~~~~~~~~-~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~ 118 (198)
T PRK08349 71 PVFEKLRE-LKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQV 118 (198)
T ss_pred HHHHHHHh-hCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchH
Confidence 11222111 111112223223223 345667788999999999765543
No 69
>PRK00919 GMP synthase subunit B; Validated
Probab=98.46 E-value=1.1e-06 Score=87.46 Aligned_cols=123 Identities=17% Similarity=0.189 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccC--CCCchHHHHHHHHHHhCC
Q 012824 95 LRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL--EGSPDLKAAREVADYLGT 172 (456)
Q Consensus 95 lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~~~e~~~A~~vA~~lg~ 172 (456)
+.+...+.++.++.. .++.+++|||+||++++.++.+..+ .++.++++.. ....|.+.++++++.+ +
T Consensus 7 ~~~~~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~lG---------~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i 75 (307)
T PRK00919 7 FIEEAIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAIG---------DRLTPVFVDTGLMRKGETERIKETFSDM-L 75 (307)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHhC---------CeEEEEEEECCCCCHHHHHHHHHHHhcc-C
Confidence 333334455556654 6899999999999999999987642 4677777653 3346899999999988 8
Q ss_pred CceEEEeChhhHHHHHHHHHHhhccCCccc-ccchHHHHHHHHHHHhCCCcEEEEcCchhhh
Q 012824 173 RHHEFHFTVQEGIDALEEVIYHIETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 173 ~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~-i~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
+|+.+.++.. +++.+..+ ..+.... +........+.+.|++.|++.+++|.-.|.+
T Consensus 76 ~~~vvd~~e~-fl~~L~~v----~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~ 132 (307)
T PRK00919 76 NLRIVDAKDR-FLDALKGV----TDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDW 132 (307)
T ss_pred CcEEEECCHH-HHHhccCC----CChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcch
Confidence 8888776532 33332221 1111000 0001112235567788899999999888765
No 70
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.43 E-value=1.2e-06 Score=89.86 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=73.3
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCC-cccceeccCCC-CchHHHHHHHHHHhCCCceEEEeChhhHH-HH
Q 012824 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGS-QLHSFCIGLEG-SPDLKAAREVADYLGTRHHEFHFTVQEGI-DA 187 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~-~l~tfsig~~~-~~e~~~A~~vA~~lg~~h~~~~~~~~~~~-~~ 187 (456)
.+|++++|||+||++++.++.+.. +. ++.++++.... ..|...++++|+.+|++|+.+.+..+ +. +.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~---------g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~~ee-f~~~~ 72 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKY---------GYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDAKEE-FAKDY 72 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhc---------CCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeCHHH-HHHHH
Confidence 368999999999999999987654 22 67888775532 35888999999999999988776532 33 33
Q ss_pred HHHHHHhh---ccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchh
Q 012824 188 LEEVIYHI---ETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSD 231 (456)
Q Consensus 188 l~~~i~~~---e~~~~~~i~~~~~~~-~l~~~a~~~g~~vvLsG~GgD 231 (456)
+...+... +.|..++..+-...+ .+.+.+++.|+++|.+|.-++
T Consensus 73 i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 73 IFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 33344321 122222211111122 356678889999999998553
No 71
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.39 E-value=2.9e-06 Score=78.49 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=70.7
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCC--chHHHHHHHHHHhCCCceEEEeChhhHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGS--PDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~--~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~ 187 (456)
++.+++|||.||++++.++.+..... +.++.++++. +... .+.+.++++|+.+|++++.+.++..+....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~------~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 74 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL------KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKG 74 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccc
Confidence 47899999999999999998754321 2356666664 3322 368899999999999999888764331100
Q ss_pred HHHHHHhhccCCcccccchHH-HHHHHHHHHhCCCcEEEEcCchhhhc
Q 012824 188 LEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 188 l~~~i~~~e~~~~~~i~~~~~-~~~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
....+. ..+... +..+.+.+++.|++++++|+-+|++-
T Consensus 75 ------~~~~~~---~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~ 113 (189)
T TIGR02432 75 ------KKKNLE---EAAREARYDFFEEIAKKHGADYILTAHHADDQA 113 (189)
T ss_pred ------cCCCHH---HHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHH
Confidence 000000 001111 22456677889999999999988753
No 72
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.39 E-value=1.6e-06 Score=89.11 Aligned_cols=111 Identities=18% Similarity=0.201 Sum_probs=70.9
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCC-chHHHHHHHHHHhCCCceEEEeChhhHH-HHH
Q 012824 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-PDLKAAREVADYLGTRHHEFHFTVQEGI-DAL 188 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~-~e~~~A~~vA~~lg~~h~~~~~~~~~~~-~~l 188 (456)
.++++++|||+|||+++.++.+.. +.++.++++..... .|...|+++|+.+|++|+.+.--.+++. +.+
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~---------G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i 76 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENY---------GCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDLREEFVRDYI 76 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhh---------CCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhc
Confidence 479999999999999999997753 24688888765433 5899999999999998755542233433 223
Q ss_pred HHHHHhhccCCc--cccc-chHHH--HHHHHHHHhCCCcEEEEcCch
Q 012824 189 EEVIYHIETYDV--TTIR-ASTPM--FLMSRKIKSLGVKMVISGEGS 230 (456)
Q Consensus 189 ~~~i~~~e~~~~--~~i~-~~~~~--~~l~~~a~~~g~~vvLsG~Gg 230 (456)
...+.....+.. +.-. .+-|. -.+.+.|++.|++++.+|.-|
T Consensus 77 ~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tg 123 (404)
T PLN00200 77 FPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATG 123 (404)
T ss_pred CHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcC
Confidence 333332211110 0000 01122 235677888999999877655
No 73
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.38 E-value=1.9e-06 Score=88.34 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=68.4
Q ss_pred eEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCc-hHHHHHHHHHHhCCC-ceEEEeChhhHHH-HHH
Q 012824 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSP-DLKAAREVADYLGTR-HHEFHFTVQEGID-ALE 189 (456)
Q Consensus 113 vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~-e~~~A~~vA~~lg~~-h~~~~~~~~~~~~-~l~ 189 (456)
|.+++|||+|||+++.++.+... .++.++++...... +.+.|+++|+.+|++ |+++.+.. ++.+ .+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~---------~eV~av~~d~Gq~~~~~e~a~~~a~~lG~~~~~viD~~~-ef~~~~i~ 70 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGG---------YEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDLRE-EFVEDYIF 70 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCC---------CeEEEEEEECCCcchhHHHHHHHHHHcCCCEEEEeccHH-HHHHHhhH
Confidence 47899999999999999987642 36888887654433 348999999999997 66665543 3332 333
Q ss_pred HHHHhhcc----CCcccccc-hHHHHHHHHHHHhCCCcEEEEcCch
Q 012824 190 EVIYHIET----YDVTTIRA-STPMFLMSRKIKSLGVKMVISGEGS 230 (456)
Q Consensus 190 ~~i~~~e~----~~~~~i~~-~~~~~~l~~~a~~~g~~vvLsG~Gg 230 (456)
..+..... |..++.-+ ....-.+.+.|++.|++++.+|.-+
T Consensus 71 ~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~ 116 (385)
T cd01999 71 PAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTG 116 (385)
T ss_pred HHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 34432211 22211111 1111234677888999999887754
No 74
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=98.32 E-value=6.3e-06 Score=80.39 Aligned_cols=131 Identities=21% Similarity=0.167 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHh-h-hcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHH
Q 012824 93 LVLRKAFEKAVVKR-L-MTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVAD 168 (456)
Q Consensus 93 ~~lr~~L~~AV~~r-l-~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~ 168 (456)
+.+.+.+.+++++. | ....++.+++|||.||++++.++.+...+.. ++..+.++++. +.+ .+.+.++++|+
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~----~~~~l~av~vd~g~~~-~~~~~~~~~~~ 84 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAP----INFELVAVNLDQKQPG-FPEHVLPEYLE 84 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCC----CCeEEEEEEecCCCCC-CCHHHHHHHHH
Confidence 45677777777763 2 2345799999999999999998877532110 01245666653 333 24457899999
Q ss_pred HhCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchHH-HHHHHHHHHhCCCcEEEEcCchhhhc
Q 012824 169 YLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 169 ~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~-~~~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
.+|++++.+.++...+. .+.+. +. ..++..+... ..++.+.|++.|+.+|++|+-.|...
T Consensus 85 ~lgI~~~v~~~~~~~~~---~~~~~--~~-~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~ 145 (258)
T PRK10696 85 SLGVPYHIEEQDTYSIV---KEKIP--EG-KTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL 145 (258)
T ss_pred HhCCCEEEEEecchhhh---hhhhc--cC-CChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH
Confidence 99999998876432211 11010 00 0011111112 23566778889999999999999754
No 75
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.31 E-value=3e-06 Score=90.41 Aligned_cols=125 Identities=19% Similarity=0.219 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHH-HHHHh
Q 012824 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAARE-VADYL 170 (456)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~-vA~~l 170 (456)
.+.+...+.+++.+. +.++.+++|||+||+++++++.+..+ .++.++++. +....|...+.+ +|+.+
T Consensus 200 ~~~~~~~~~l~~~v~-~~~vlva~SGGvDS~vll~ll~~~lg---------~~v~av~vd~g~~~~~e~~~~~~~~a~~l 269 (511)
T PRK00074 200 NFIEEAIEEIREQVG-DKKVILGLSGGVDSSVAAVLLHKAIG---------DQLTCVFVDHGLLRKNEAEQVMEMFREHF 269 (511)
T ss_pred HHHHHHHHHHHHhcC-CCcEEEEeCCCccHHHHHHHHHHHhC---------CceEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 344444455555554 46899999999999999999988653 467777764 322356777775 77999
Q ss_pred CCCceEEEeChhhHHHHHHHHHHhhccCCcc-cccchHHHHHHHHHHHhC-CCcEEEEcCchhhh
Q 012824 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVT-TIRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 233 (456)
Q Consensus 171 g~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~-~i~~~~~~~~l~~~a~~~-g~~vvLsG~GgDEl 233 (456)
|++|+.+.++.. +++.+..+ ..+... .+........+.+.+++. |++.+++|+-.|.+
T Consensus 270 gi~~~vvd~~~~-f~~~l~g~----~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~ 329 (511)
T PRK00074 270 GLNLIHVDASDR-FLSALAGV----TDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDV 329 (511)
T ss_pred CCcEEEEccHHH-HHHhccCC----CCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchh
Confidence 999998876532 22222111 011100 011111223456777888 99999999977765
No 76
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.29 E-value=3.1e-06 Score=70.52 Aligned_cols=76 Identities=28% Similarity=0.316 Sum_probs=57.0
Q ss_pred eEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHHHH
Q 012824 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVI 192 (456)
Q Consensus 113 vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i 192 (456)
+.+.+|||+||++++.++.+.. .++..+++.....+|...+++.++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----------YQVIAVTVDHGISPRLEDAKEIAKE----------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----------CCEEEEEEcCCCcccHHHHHHHHHH-----------------------
Confidence 4789999999999999998754 3577777765444467777777776
Q ss_pred HhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhcc
Q 012824 193 YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (456)
Q Consensus 193 ~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfg 235 (456)
.....+.+.+++.|++.+++|+..|.+..
T Consensus 48 --------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~ 76 (103)
T cd01986 48 --------------AREEAAKRIAKEKGAETIATGTRRDDVAN 76 (103)
T ss_pred --------------HHHHHHHHHHHHcCCCEEEEcCCcchHHH
Confidence 11234566778889999999999998754
No 77
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=4.2e-06 Score=83.07 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceec--cCCC--CchHHHHHHHHHH
Q 012824 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEG--SPDLKAAREVADY 169 (456)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~--~~e~~~A~~vA~~ 169 (456)
.++..+.++++..-+-+..+.|++|||.||++++.++.+.... -.+.++++ ++.+ ..+...++.+++.
T Consensus 5 ~~~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~--------~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~ 76 (298)
T COG0037 5 KLERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRR--------IEVEAVHVDHGLRGYSDQEAELVEKLCEK 76 (298)
T ss_pred HHHHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhccC--------ceEEEEEecCCCCCccchHHHHHHHHHHH
Confidence 3444555555543222568999999999999999999886531 14555555 4443 3578899999999
Q ss_pred hCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchHH-HHHHHHHHHhCCCcEEEEcCchhhhc
Q 012824 170 LGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 170 lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~-~~~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
+|++++...++........+ .. .++..+... ..++.+.|.+.|+++++||+-+|...
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~-------~~-~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~ 134 (298)
T COG0037 77 LGIPLIVERVTDDLGRETLD-------GK-SICAACRRLRRGLLYKIAKELGADKIATGHHLDDQA 134 (298)
T ss_pred hCCceEEEEEEeeccccccC-------CC-ChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHH
Confidence 99988887766543221111 00 011112223 34577888999999999999999764
No 78
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.25 E-value=3e-06 Score=83.99 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=70.3
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--CCchHHHHHHHHHHhCC-CceEEEeChhhHHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGT-RHHEFHFTVQEGIDAL 188 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~e~~~A~~vA~~lg~-~h~~~~~~~~~~~~~l 188 (456)
++.+++|||+||+++++++.+..+ .++.++++... ...|...++++++.+|. +|+.+.++.. +++.+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG---------~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e~-fl~~l 70 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIG---------DRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASER-FLSAL 70 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhC---------CcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcHH-HHHHh
Confidence 368999999999999999988643 45777776432 34688999999998886 8888876532 23222
Q ss_pred HHHHHhhccCCccc-ccchHHHHHHHHHHHhCC-CcEEEEcCchhhh
Q 012824 189 EEVIYHIETYDVTT-IRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 233 (456)
Q Consensus 189 ~~~i~~~e~~~~~~-i~~~~~~~~l~~~a~~~g-~~vvLsG~GgDEl 233 (456)
.. ...+.... +....-.-.+.+.|++.| ++.+++|.-.|.+
T Consensus 71 ~~----v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~ 113 (295)
T cd01997 71 KG----VTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDV 113 (295)
T ss_pred cC----CCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccch
Confidence 11 10010000 000011224566788889 9999999998876
No 79
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=98.23 E-value=3.5e-06 Score=86.50 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=56.8
Q ss_pred cceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccE---EeCCCcEEEecC
Q 012824 2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFI---SFPPGHIYSSKQ 69 (456)
Q Consensus 2 L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~---~lpPG~~~~~~~ 69 (456)
++|.|++++-|. +.+.++|||.|.|||+|+..+++.++||||..++-...+.|. .|.||+.+.++.
T Consensus 326 ~dGp~aiv~~dg--~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe~v~id~ 394 (413)
T cd00713 326 WDGPAAIAFTDG--RQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEMLLVDL 394 (413)
T ss_pred CCCcEEEEEEeC--CEEEEEeCCCCCcceEEEEECCCEEEEEeCCcccCCCcceeeecCCCCCCeEEEEEC
Confidence 789999999886 689999999999999999876667999999988855566676 899999987754
No 80
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.22 E-value=8.3e-06 Score=75.06 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=68.3
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--CC--chHHHHHHHHHHhCCCceEEEeChhhHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GS--PDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~--~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~ 187 (456)
.+.+++|||.||++++.++.+..... +.++.++++... .. .+...++++|+.+|++++.+.......
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~------~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--- 71 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL------GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAPK--- 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccccC---
Confidence 37899999999999999998765321 135777777533 22 478999999999999988772110000
Q ss_pred HHHHHHhhccCCcccccchHHH-HHHHHHHHhCCCcEEEEcCchhhh
Q 012824 188 LEEVIYHIETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 188 l~~~i~~~e~~~~~~i~~~~~~-~~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
..... ...+.... ..+.+.|.+.|++.+++|+-+|++
T Consensus 72 --------~~~~~-~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~ 109 (185)
T cd01992 72 --------PGGNL-EAAAREARYDFFAEIAKEHGADVLLTAHHADDQ 109 (185)
T ss_pred --------CCCCH-HHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH
Confidence 00000 00111122 246677888999999999998875
No 81
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.19 E-value=6.3e-06 Score=84.74 Aligned_cols=105 Identities=20% Similarity=0.157 Sum_probs=68.4
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC-CchHHHHHHHHHHhCC-CceEEEeChhhHHHH-H
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG-SPDLKAAREVADYLGT-RHHEFHFTVQEGIDA-L 188 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~-~~e~~~A~~vA~~lg~-~h~~~~~~~~~~~~~-l 188 (456)
++++++|||+|||+++.++.+.. .++.++++.... ..|...+++.|+.+|+ +|+++.+.. ++.+. .
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g----------~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~~-ef~~~~~ 69 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKG----------YEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDARE-EFVKDYG 69 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcC----------CEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCHH-HHHHhhc
Confidence 47899999999999999887652 468888875443 3588999999999997 787777654 33322 1
Q ss_pred HHHHHhh---c-cCCcccccchHHHH----HHHHHHHhCCCcEEEEcCch
Q 012824 189 EEVIYHI---E-TYDVTTIRASTPMF----LMSRKIKSLGVKMVISGEGS 230 (456)
Q Consensus 189 ~~~i~~~---e-~~~~~~i~~~~~~~----~l~~~a~~~g~~vvLsG~Gg 230 (456)
-..+... + .|... .++.-. .+.+.|++.|++++..|.-+
T Consensus 70 ~~~i~~n~~y~~~Y~l~---t~laR~li~~~l~~~A~~~G~~~Ia~G~t~ 116 (394)
T TIGR00032 70 FAAIQANAFYEGTYPLS---TALARPLIAKKLVEAAKKEGANAVAHGCTG 116 (394)
T ss_pred hhhhcCCccccCccccc---chhhHHHHHHHHHHHHHHcCCCEEEECccC
Confidence 1112111 1 12111 111111 25566788999999999844
No 82
>PLN02347 GMP synthetase
Probab=98.19 E-value=6.8e-06 Score=87.77 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=58.8
Q ss_pred HHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHH-HHHHHHhCCCceEE
Q 012824 101 KAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAA-REVADYLGTRHHEF 177 (456)
Q Consensus 101 ~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A-~~vA~~lg~~h~~~ 177 (456)
+.++.++..+.++.++||||+|||++|+++.+..+ .++.++++. +-...|...+ +.+|+++|++|+.+
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG---------~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vv 290 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHKAIG---------DRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCV 290 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhC---------CcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEE
Confidence 44455566677899999999999999999998653 468888875 3334466555 77999999999999
Q ss_pred EeChhhHHHHHH
Q 012824 178 HFTVQEGIDALE 189 (456)
Q Consensus 178 ~~~~~~~~~~l~ 189 (456)
.+++ .+++.|+
T Consensus 291 d~~e-~fl~~l~ 301 (536)
T PLN02347 291 DASE-RFLSKLK 301 (536)
T ss_pred eCcH-HHHhhCC
Confidence 8764 3445443
No 83
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.19 E-value=6.9e-06 Score=84.94 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=69.4
Q ss_pred cCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceec---cCCCCchHHHHHHHHHHhC-----CCceEEEeC
Q 012824 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI---GLEGSPDLKAAREVADYLG-----TRHHEFHFT 180 (456)
Q Consensus 109 sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsi---g~~~~~e~~~A~~vA~~lg-----~~h~~~~~~ 180 (456)
++.++.++||||+||++++.++.+.. .++.++++ .+....+...++++|+.++ ++|+.+.++
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~G----------~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~ 244 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKRG----------VEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFT 244 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHCC----------CEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEECH
Confidence 35567899999999999999987643 35655555 2322346788888888885 888888876
Q ss_pred hhhHHHHHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhhc
Q 012824 181 VQEGIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 181 ~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~-~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
+.. +.+. .... ....++.+-..+| .+.+.|.+.|+.++.||+-.|.+.
T Consensus 245 ~~~--~~i~---~~~~-~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~ 293 (394)
T PRK01565 245 EIQ--EEIK---KKVP-ESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVA 293 (394)
T ss_pred HHH--HHHh---hcCC-CceEEEeHHHHHHHHHHHHHHHcCCCEEEEcccccccc
Confidence 421 2221 1110 0111221222333 345667789999999999987653
No 84
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=98.17 E-value=8.1e-06 Score=75.29 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=62.6
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceec--cCCCC--chHHHHHHHHHHhCCCceEEEeChhhHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGS--PDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~--~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~ 187 (456)
+|.|++|||.||++++.++.+..... +.++.++++ ++... .|....++.++.+|++++...++...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~------~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~---- 70 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN------GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDEDR---- 70 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT------TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CHC----
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc------CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeeee----
Confidence 37899999999999999998875422 235666665 44432 36788999999999999988876410
Q ss_pred HHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhh
Q 012824 188 LEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 188 l~~~i~~~e~~~~~~i~~~~~~~-~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
..-......+...-| ++.+.|++.|+.++++|+-.|..
T Consensus 71 --------~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~ 109 (182)
T PF01171_consen 71 --------KKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQ 109 (182)
T ss_dssp --------CTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHH
T ss_pred --------cccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCcc
Confidence 000000000111223 56778889999999999999975
No 85
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1e-05 Score=78.44 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=76.3
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc----CC-------CCchHHHHHHHHHHhCCCceEEEe
Q 012824 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG----LE-------GSPDLKAAREVADYLGTRHHEFHF 179 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig----~~-------~~~e~~~A~~vA~~lg~~h~~~~~ 179 (456)
..|.|++|||+|||+-|.++++.. .++..+-+. ++ ...|...|+.|+++|+++.|.+++
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g----------~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf 75 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARG----------YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNF 75 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcC----------CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEee
Confidence 468999999999999999988765 344444321 11 135899999999999999999999
Q ss_pred ChhhHHHHHHHHHHhhc---cCCcccccch-HHHHH-HHHHHH-hCCCcEEEEcCchhhhccCCc
Q 012824 180 TVQEGIDALEEVIYHIE---TYDVTTIRAS-TPMFL-MSRKIK-SLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 180 ~~~~~~~~l~~~i~~~e---~~~~~~i~~~-~~~~~-l~~~a~-~~g~~vvLsG~GgDElfgGy~ 238 (456)
..|-..+.+..++...+ +|+ |.|.+. ..-+- +.+.|. ..|.+.+.||+.|--+++-+.
T Consensus 76 ~kEYW~~Vfs~~L~~Y~~G~TPN-PDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~ 139 (377)
T KOG2805|consen 76 VKEYWNDVFSPFLEEYENGRTPN-PDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDED 139 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCC-CCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCccc
Confidence 87665555555554332 232 222221 01111 233333 357889999999977776543
No 86
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.14 E-value=2.3e-05 Score=86.62 Aligned_cols=144 Identities=18% Similarity=0.162 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHhhhc--CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCC--chHHHHHHHH
Q 012824 92 PLVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVA 167 (456)
Q Consensus 92 ~~~lr~~L~~AV~~rl~s--d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~e~~~A~~vA 167 (456)
.+++.+.+...+++++.. ...+.+.||||+||+++++++.+....-+. -..++.++++...++ .....|+++|
T Consensus 341 ~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~---~~~~v~~v~mp~~~ss~~s~~~a~~la 417 (679)
T PRK02628 341 CYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGL---PRKNILAYTMPGFATTDRTKNNAVALM 417 (679)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCC---CcceEEEEECCCCCCCHHHHHHHHHHH
Confidence 355666666677776642 457899999999999999998887421100 003577777632233 3568999999
Q ss_pred HHhCCCceEEEeChhhHHHHHHHHHHhh-----ccCCcc--cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCccc
Q 012824 168 DYLGTRHHEFHFTVQEGIDALEEVIYHI-----ETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (456)
Q Consensus 168 ~~lg~~h~~~~~~~~~~~~~l~~~i~~~-----e~~~~~--~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~ 240 (456)
+.+|++|+++.+.+ .++...+.+... +..+.+ .+.+-+-+..+...|.+.|..|+-||+- +|++-||-.+
T Consensus 418 ~~LGi~~~~i~I~~--~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tgn~-sE~~~Gy~T~ 494 (679)
T PRK02628 418 KALGVTAREIDIRP--AALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTGDL-SELALGWCTY 494 (679)
T ss_pred HHhCCeEEEEEcHH--HHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCCch-hhHHhCceec
Confidence 99999999998743 333322222211 001111 1112233456777788889988889964 6777788654
Q ss_pred c
Q 012824 241 H 241 (456)
Q Consensus 241 ~ 241 (456)
.
T Consensus 495 ~ 495 (679)
T PRK02628 495 G 495 (679)
T ss_pred C
Confidence 4
No 87
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.12 E-value=1.4e-05 Score=72.75 Aligned_cols=87 Identities=24% Similarity=0.293 Sum_probs=60.8
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--CCchHHHHHHHHHHhCCCceEEEeChhhHHHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~ 189 (456)
++.+++|||+||++++.++.+.. .++.++++.+. ...|...++++++.+| ++..+...
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--------- 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPAR--------- 60 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcC----------CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCc---------
Confidence 46899999999999998887643 35777877543 2347789999999999 33222110
Q ss_pred HHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhh
Q 012824 190 EVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 190 ~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
.....-++.+.+.+.|++.+++|+-.|+.
T Consensus 61 ---------------~~~~~~~l~~~a~~~g~~~i~~G~~~~d~ 89 (169)
T cd01995 61 ---------------NLIFLSIAAAYAEALGAEAIIIGVNAEDY 89 (169)
T ss_pred ---------------CHHHHHHHHHHHHHCCCCEEEEeeccCcc
Confidence 00011134556678899999999999875
No 88
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.05 E-value=2.6e-05 Score=79.87 Aligned_cols=110 Identities=21% Similarity=0.203 Sum_probs=68.6
Q ss_pred cCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCC-------ceEEEeCh
Q 012824 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTR-------HHEFHFTV 181 (456)
Q Consensus 109 sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~-------h~~~~~~~ 181 (456)
+..++.++||||+||++.+.++.+.. .++.++++... ..+...++++|+.|+.. .+.+.++.
T Consensus 179 s~gkvlvllSGGiDSpVAa~ll~krG----------~~V~~v~f~~g-~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~ 247 (381)
T PRK08384 179 TQGKVVALLSGGIDSPVAAFLMMKRG----------VEVIPVHIYMG-EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQE 247 (381)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHcC----------CeEEEEEEEeC-HHHHHHHHHHHHHhcccccCCcceEEEEChHH
Confidence 46678899999999999999888753 46666665322 34678899999999843 33333211
Q ss_pred h-hHHHHHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhh
Q 012824 182 Q-EGIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 182 ~-~~~~~l~~~i~~~e~~~~~~i~~~~~~~-~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
. ++.+.+.+ .. ....+++.+...+| .+.+.|++.|++.++||+-.+.+
T Consensus 248 ~~~v~~~i~~---~~-~~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqv 297 (381)
T PRK08384 248 RERIIQKLKE---LK-KENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQV 297 (381)
T ss_pred HHHHHHHHHH---hc-cCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhH
Confidence 1 12222221 11 11123333333344 45566788999999999987665
No 89
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1.4e-05 Score=70.55 Aligned_cols=62 Identities=29% Similarity=0.315 Sum_probs=49.2
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhh
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQE 183 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~ 183 (456)
.+++++|||-|||+-|-++.+.. ..++..|+.|.--+..++|++.|+.+|.+|..+.++.+-
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klg----------yev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~i 63 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLG----------YEVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDREI 63 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhC----------CCcEEEEEEeccccchhhHHHHHHHhCCCcceeccCHHH
Confidence 47899999999999888888764 344445554443567899999999999999999987643
No 90
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.03 E-value=2.6e-05 Score=80.04 Aligned_cols=111 Identities=21% Similarity=0.239 Sum_probs=68.4
Q ss_pred cCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC---CchHHHHHHHHHHhC---CCceEEEeChh
Q 012824 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG---SPDLKAAREVADYLG---TRHHEFHFTVQ 182 (456)
Q Consensus 109 sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~---~~e~~~A~~vA~~lg---~~h~~~~~~~~ 182 (456)
++.++.++||||+||++.+.++.+.. .++.++++.... ..+...++.+++.++ .+.+.+.++..
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG----------~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~ 240 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRG----------CRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDFT 240 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcC----------CeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeCH
Confidence 45678899999999999999887643 456666654332 246788999999984 32233444333
Q ss_pred hHHHHHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhh
Q 012824 183 EGIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 183 ~~~~~l~~~i~~~e~~~~~~i~~~~~~~-~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
+.. .++....+. ...++.+-..+| .+.+.|.+.|++.++||+-.|.+
T Consensus 241 ~~~---~~i~~~~~~-~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~ 288 (371)
T TIGR00342 241 DVQ---EEIIHIIPE-GYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQV 288 (371)
T ss_pred HHH---HHHHhcCCC-CceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhh
Confidence 332 222222111 112222222333 34566778999999999998875
No 91
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.99 E-value=3.3e-05 Score=72.04 Aligned_cols=92 Identities=22% Similarity=0.172 Sum_probs=60.1
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC---C-----CchHHHHHHHHHHhCCCceEEEeChhh
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE---G-----SPDLKAAREVADYLGTRHHEFHFTVQE 183 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~---~-----~~e~~~A~~vA~~lg~~h~~~~~~~~~ 183 (456)
++.+++|||.||++.+.++.+.. ..+.++++..+ + ..+...++++|+.+|++|+.+.++...
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~ 70 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG----------HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEE 70 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCc
Confidence 36799999999999998888743 34444433211 1 137889999999999999988764311
Q ss_pred HHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhh
Q 012824 184 GIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 184 ~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDE 232 (456)
-+... .++...+.+++.|++++++|+-.++
T Consensus 71 -e~~~~------------------~l~~~l~~~~~~g~~~vv~G~i~sd 100 (194)
T cd01994 71 -EDEVE------------------DLKELLRKLKEEGVDAVVFGAILSE 100 (194)
T ss_pred -hHHHH------------------HHHHHHHHHHHcCCCEEEECccccH
Confidence 01100 1222223333348999999998876
No 92
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.98 E-value=3.3e-05 Score=71.18 Aligned_cols=123 Identities=20% Similarity=0.146 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhhcC----------CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCch-HHH
Q 012824 94 VLRKAFEKAVVKRLMTD----------VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPD-LKA 162 (456)
Q Consensus 94 ~lr~~L~~AV~~rl~sd----------~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e-~~~ 162 (456)
++.+.|++.+..||... ..++|++|||.|||+.+-++.... ..+.--|+-++ +. ...
T Consensus 34 e~~~rl~e~l~~RL~g~~ef~r~~id~~kiaVA~SGG~DSsas~iilR~~g----------~~v~p~t~~Lp--~~ir~n 101 (255)
T COG1365 34 EVYERLRELLKKRLEGEKEFERIKIDKPKIAVAYSGGVDSSASAIILRWAG----------FTVDPGTAILP--DHIRRN 101 (255)
T ss_pred HHHHHHHHHHHHHhcCchhcccCCCCCceEEEEecCCcchHHHHHHHHhhc----------eeeccccccCC--HHHhHH
Confidence 45667777778887542 679999999999999887776543 11211222222 22 345
Q ss_pred HHHHHHHhCCCceEEEeChhhHHHHHHHHHH-hhccCCcccccch-HHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 012824 163 AREVADYLGTRHHEFHFTVQEGIDALEEVIY-HIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 163 A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~-~~e~~~~~~i~~~-~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~ 238 (456)
+...+..+|+.+..+.. .+.++.. .++.-..++.+++ +.+-.+..++++.+++++.+|++ |-.||.
T Consensus 102 ~~~l~~~lg~~p~yvee-------dl~~i~kGalnGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDl---Ls~G~~ 169 (255)
T COG1365 102 KEELETLLGEVPEYVEE-------DLEDIEKGALNGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDL---LSTGYG 169 (255)
T ss_pred HHHHHHHHccCHHHHHH-------HHHHHHhhhccCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEccc---cccccc
Confidence 77888999988765432 2222222 1222223455653 45566888999999999999876 445774
No 93
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=97.98 E-value=3.4e-05 Score=69.34 Aligned_cols=115 Identities=20% Similarity=0.132 Sum_probs=68.9
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~ 189 (456)
++.+.+|||.||++++.++.+...+. .++..+++. .+......+++++++.+|++++.+..+...... ..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-------~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 72 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-------KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEG-LA 72 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-------cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHH-HH
Confidence 47899999999999999998865310 145555553 332345789999999999999888765432111 00
Q ss_pred HHHHhhccCCcccccc-h--HHHHHHHHHHHhCCCcEEEEcCchhhhcc
Q 012824 190 EVIYHIETYDVTTIRA-S--TPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (456)
Q Consensus 190 ~~i~~~e~~~~~~i~~-~--~~~~~l~~~a~~~g~~vvLsG~GgDElfg 235 (456)
..... ..+.....+. . .-.-.+.+.+++.|..++++|.-+||...
T Consensus 73 ~~~~~-~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~ 120 (173)
T cd01713 73 LGLKG-FPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESAR 120 (173)
T ss_pred Hhhhc-cCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchh
Confidence 11111 1111011100 0 00112445566678899999999999753
No 94
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=97.97 E-value=1.9e-05 Score=86.94 Aligned_cols=73 Identities=22% Similarity=0.473 Sum_probs=61.1
Q ss_pred CcceeEEEEEEE-CCCCEEEEEeccCCCccEEEEEecC--------------------CeEEEecccchhhhccCccEEe
Q 012824 1 MLDGMFSFVLLD-TRDKSFIAARDAIGVTPLYMGWGLD--------------------GSIWFASEMKALSDDCERFISF 59 (456)
Q Consensus 1 ~L~G~Fa~~i~D-~~~~~l~laRD~~G~~PLyy~~~~~--------------------~~~~faSeik~L~~~~~~I~~l 59 (456)
+|+|+|||++.. ...++++++||+ +||+++..++ +.++||||+++|...++.|..|
T Consensus 187 ~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a~~~~t~~~~~l 263 (670)
T PTZ00394 187 MVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNSFAEYTREVVFL 263 (670)
T ss_pred HccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHHHHHhhceEEEe
Confidence 589999999985 345899999999 9999998631 4799999999999999999999
Q ss_pred CCCcEEEecCCeEEEeeC
Q 012824 60 PPGHIYSSKQGGLRRWYN 77 (456)
Q Consensus 60 pPG~~~~~~~~~~~~y~~ 77 (456)
++|++..+..+.+ ++++
T Consensus 264 ~dg~~~~~~~~~~-~~~~ 280 (670)
T PTZ00394 264 EDGDIAHYCDGAL-RFYN 280 (670)
T ss_pred cCCeEEEEECCEE-EEEe
Confidence 9999988765544 3443
No 95
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.97 E-value=3.6e-05 Score=73.16 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=58.0
Q ss_pred EeccCcccHHHHHHHHHHHhchhhhhhhcCCccc-ceeccCC-------CCchHHHHHHHHHHhCCCceEEEeChhhHHH
Q 012824 115 VLLSGGLDSSLVAAVASRYLADSEAACQWGSQLH-SFCIGLE-------GSPDLKAAREVADYLGTRHHEFHFTVQEGID 186 (456)
Q Consensus 115 v~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~-tfsig~~-------~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~ 186 (456)
+++|||+||++.+..+.+.. ..+. .+++... ...+...++++|+.+|++|+.+.++...- +
T Consensus 2 vl~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~-~ 70 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEEG----------HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKE-K 70 (218)
T ss_pred eeecCcHHHHHHHHHHHHcC----------CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCCh-H
Confidence 68999999999998887743 2342 3333211 13488999999999999999888762100 0
Q ss_pred HHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhh
Q 012824 187 ALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 187 ~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDE 232 (456)
..+ .++...+.+++.|++.+++|.-.++
T Consensus 71 ~~~------------------~l~~~l~~~~~~g~~~vv~G~i~sd 98 (218)
T TIGR03679 71 EVE------------------DLKGALKELKREGVEGIVTGAIASR 98 (218)
T ss_pred HHH------------------HHHHHHHHHHHcCCCEEEECCcccH
Confidence 000 1223334444559999999988763
No 96
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=97.91 E-value=0.00019 Score=69.92 Aligned_cols=139 Identities=22% Similarity=0.256 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhhh--cCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--CCchHHHHHHHHHH
Q 012824 94 VLRKAFEKAVVKRLM--TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADY 169 (456)
Q Consensus 94 ~lr~~L~~AV~~rl~--sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~e~~~A~~vA~~ 169 (456)
+..+.+.+-++.++. .-..+.+.||||+||+++++++.+...+. + ....+.++..... ...+...|..+++.
T Consensus 7 ~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~-~---~~~~~~av~mP~~~~~~~~~~da~~~~~~ 82 (268)
T COG0171 7 EEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKG-D---SKENVLAVRLPYGYTVQADEEDAQDLAEA 82 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccc-c---chhheeeEECCCCCccccCHHHHHHHHHH
Confidence 344444444555544 23457899999999999999999887520 0 0012555555444 33578889999999
Q ss_pred hCCCceEEEeChhhHHHHH-HHHHHhhcc---CCc--ccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCcc
Q 012824 170 LGTRHHEFHFTVQEGIDAL-EEVIYHIET---YDV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (456)
Q Consensus 170 lg~~h~~~~~~~~~~~~~l-~~~i~~~e~---~~~--~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~ 239 (456)
+|++..++.+.+ .++.+ ..+...... .+. ..+.+-.-|-.++..|.+.|. +|+.-...+|+.-||-.
T Consensus 83 lg~~~~~i~I~~--~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~-lVlGTgn~sE~~~Gy~T 155 (268)
T COG0171 83 LGIDYKEINIKP--AVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGG-LVLGTGNKSELALGYFT 155 (268)
T ss_pred hCCceEEEecHH--HHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCC-EEEcCCcHHHHhcCcee
Confidence 999966666543 44443 222222111 111 111111223334444555654 45544446788889843
No 97
>PRK05370 argininosuccinate synthase; Validated
Probab=97.91 E-value=6.4e-05 Score=77.32 Aligned_cols=117 Identities=21% Similarity=0.167 Sum_probs=78.7
Q ss_pred HhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC--CchHHHHHHHHHHhCC-CceEEEeCh
Q 012824 105 KRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYLGT-RHHEFHFTV 181 (456)
Q Consensus 105 ~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~e~~~A~~vA~~lg~-~h~~~~~~~ 181 (456)
+.|....+|+++.|||||||+++..+.+.. ..|.||++..-. ..|.+.+++-|..+|. +|+.+....
T Consensus 6 ~~l~~~~KVvLAYSGGLDTSv~l~wL~e~~----------~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~ 75 (447)
T PRK05370 6 KHLPVGQRVGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRA 75 (447)
T ss_pred hhCCCCCEEEEEecCCchHHHHHHHHHhcC----------CeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHH
Confidence 345455689999999999999998887642 469999976543 4688999999999999 577776654
Q ss_pred hhHHHHHHHHHHhhc--------cCCcccccchHHH--HHHHHHHHhCCCcEEE---EcCchhhh
Q 012824 182 QEGIDALEEVIYHIE--------TYDVTTIRASTPM--FLMSRKIKSLGVKMVI---SGEGSDEI 233 (456)
Q Consensus 182 ~~~~~~l~~~i~~~e--------~~~~~~i~~~~~~--~~l~~~a~~~g~~vvL---sG~GgDEl 233 (456)
+-.-+.+ ..|...- .|...+. .+.|. -.+.+.|++.|++++. ||-|-|++
T Consensus 76 eF~e~~i-~aI~anA~Y~~~~e~~Y~l~t~-LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQv 138 (447)
T PRK05370 76 QLVAEGI-AAIQCGAFHISTGGVTYFNTTP-LGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIE 138 (447)
T ss_pred HHHHHHH-HHHHcCCccccccCccccCCCc-chHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchH
Confidence 4333445 5554322 1322110 12222 2355778889999887 66777876
No 98
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=97.90 E-value=4.9e-05 Score=77.56 Aligned_cols=109 Identities=23% Similarity=0.295 Sum_probs=68.5
Q ss_pred EeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCC-chHHHHHHHHHHhCC-CceEEEeChhhHHHHHHHHH
Q 012824 115 VLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-PDLKAAREVADYLGT-RHHEFHFTVQEGIDALEEVI 192 (456)
Q Consensus 115 v~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~-~e~~~A~~vA~~lg~-~h~~~~~~~~~~~~~l~~~i 192 (456)
++.|||||||.++..+.+... ..|+||++..-.. .|...+++-|..+|. +|+.+....+-.-+.+-..|
T Consensus 2 LAySGGLDTS~~l~~L~e~~~---------~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI 72 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEGG---------YEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAI 72 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTTT---------EEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHH
T ss_pred eeeCCChHHHHHHHHHHhhcC---------ceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHH
Confidence 689999999999998887652 4799999876544 688999999999998 88888775543335555566
Q ss_pred Hhhc----cCCcccccchHHHH--HHHHHHHhCCCcEEE---EcCchhhh
Q 012824 193 YHIE----TYDVTTIRASTPMF--LMSRKIKSLGVKMVI---SGEGSDEI 233 (456)
Q Consensus 193 ~~~e----~~~~~~i~~~~~~~--~l~~~a~~~g~~vvL---sG~GgDEl 233 (456)
...- .|...+ ..+.|.. .+.+.|++.|++++. ||-|-|.+
T Consensus 73 ~anA~Yeg~YpL~t-sl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqv 121 (388)
T PF00764_consen 73 KANALYEGRYPLST-SLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQV 121 (388)
T ss_dssp HTT--BTTTB--CC-CCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHH
T ss_pred HHHHHhCCCccccc-cchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchh
Confidence 5432 232211 1122322 345667888999887 66777876
No 99
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.90 E-value=0.00015 Score=72.07 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=68.6
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHH
Q 012824 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l 188 (456)
..+++++|||.||++++.++.+.+... ..++..+++. +.-....+++.++|+.+|++++.+... +.+
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~------~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~--~~i--- 96 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPG------KLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNP--EGI--- 96 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhccc------CCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCh--HHH---
Confidence 467899999999999999998875321 1245566553 322234688999999999998776532 211
Q ss_pred HHHHHhhccCCc-ccccch-HHHHHHHHHHHhCCCcEEEEcCchhhh
Q 012824 189 EEVIYHIETYDV-TTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 189 ~~~i~~~e~~~~-~~i~~~-~~~~~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
......+.. +...+. .-...+.+.+++.|++++++|.-.||-
T Consensus 97 ---~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~ 140 (301)
T PRK05253 97 ---ARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEE 140 (301)
T ss_pred ---hcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchh
Confidence 111111111 011111 112345677778899999999999983
No 100
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=97.87 E-value=3.3e-05 Score=85.34 Aligned_cols=69 Identities=19% Similarity=0.481 Sum_probs=58.7
Q ss_pred CcceeEEEEEEECC-CCEEEEEeccCCCccEEEEEec--C---------------------CeEEEecccchhhhccCcc
Q 012824 1 MLDGMFSFVLLDTR-DKSFIAARDAIGVTPLYMGWGL--D---------------------GSIWFASEMKALSDDCERF 56 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~-~~~l~laRD~~G~~PLyy~~~~--~---------------------~~~~faSeik~L~~~~~~I 56 (456)
+|+|+|||++.+.. .++++++||+ +||+++..+ + +.++||||..+|....+.|
T Consensus 181 ~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSe~~al~~~~~~~ 257 (680)
T PLN02981 181 QLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFFLASDASAVVEHTKRV 257 (680)
T ss_pred hccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEEEEeCHHHHHHhcCEE
Confidence 58999999999965 3899999996 899988752 1 3699999999999999999
Q ss_pred EEeCCCcEEEecCCeE
Q 012824 57 ISFPPGHIYSSKQGGL 72 (456)
Q Consensus 57 ~~lpPG~~~~~~~~~~ 72 (456)
..|+||+++.++.+++
T Consensus 258 ~~l~~gei~~i~~~~~ 273 (680)
T PLN02981 258 LVIEDNEVVHLKDGGV 273 (680)
T ss_pred EEECCCeEEEEECCeE
Confidence 9999999988865543
No 101
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.82 E-value=9.1e-05 Score=78.66 Aligned_cols=111 Identities=18% Similarity=0.268 Sum_probs=66.5
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCC----chHHHHHHHHHHhCCCce--EEEeChhh
Q 012824 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS----PDLKAAREVADYLGTRHH--EFHFTVQE 183 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~----~e~~~A~~vA~~lg~~h~--~~~~~~~~ 183 (456)
..++.++||||+||++.+.++.+.. ..+.++++.+... .+.+.++.+++.++..|. .+.++-.+
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~krG----------~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~~ 246 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMRRG----------SRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFEP 246 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHHcC----------CEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecHH
Confidence 4467799999999999998887653 4566666543221 267889999988886554 34443322
Q ss_pred HHHHHHHHHHhhccCCcccccchHHHHH-HHHHHHhCCCcEEEEcCchhhhc
Q 012824 184 GIDALEEVIYHIETYDVTTIRASTPMFL-MSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 184 ~~~~l~~~i~~~e~~~~~~i~~~~~~~~-l~~~a~~~g~~vvLsG~GgDElf 234 (456)
... ++..... .....+-.-..|+. ..+.|.+.|++.++||+-.|++-
T Consensus 247 ~~~---~i~~~~~-~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dva 294 (482)
T PRK01269 247 VVG---EILEKVD-DGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVS 294 (482)
T ss_pred HHH---HHHhcCC-CceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhh
Confidence 222 2222111 11111000112222 25567788999999999988763
No 102
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.78 E-value=7.8e-05 Score=76.29 Aligned_cols=65 Identities=32% Similarity=0.348 Sum_probs=55.3
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-cCccEEeCCCcEEEe
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSS 67 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~ 67 (456)
++.|.|++++... +.|+.+|||.|+|||-++...+|..+||||-.+|-.. .+-|+.++||+.+.+
T Consensus 160 ~v~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i 225 (470)
T COG0034 160 RVKGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVII 225 (470)
T ss_pred hcCCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEE
Confidence 4689999999875 4899999999999999998655669999998888665 456788999999874
No 103
>PRK08576 hypothetical protein; Provisional
Probab=97.77 E-value=0.0002 Score=74.46 Aligned_cols=121 Identities=21% Similarity=0.195 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhhcCC--CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHHHh
Q 012824 95 LRKAFEKAVVKRLMTDV--PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYL 170 (456)
Q Consensus 95 lr~~L~~AV~~rl~sd~--~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~~l 170 (456)
+-+.+++.+.+-+.... ++.+.+|||.||++++.++.+... ++..+++. +......++++++++.+
T Consensus 217 ~le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~~~----------~V~aV~iDTG~e~pet~e~~~~lae~L 286 (438)
T PRK08576 217 VLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAFG----------DVTAVYVDTGYEMPLTDEYVEKVAEKL 286 (438)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHhCC----------CCEEEEeCCCCCChHHHHHHHHHHHHc
Confidence 34444444443344322 799999999999999988887652 46666654 32223578999999999
Q ss_pred CCCceEEEeChhhHHHHHHHHHHhhccCCcccccchH-HHHHHHHHHHhCCCcEEEEcCchhh
Q 012824 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAST-PMFLMSRKIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 171 g~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~-~~~~l~~~a~~~g~~vvLsG~GgDE 232 (456)
|++++...++... . +.....+....-.+.. -...+.+.+++.|++++++|+-.||
T Consensus 287 GI~lii~~v~~~~---~----~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~dE 342 (438)
T PRK08576 287 GVDLIRAGVDVPM---P----IEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGE 342 (438)
T ss_pred CCCEEEcccCHHH---H----hhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHH
Confidence 9998763222211 1 1111111111111121 1124556677889999999987777
No 104
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=97.71 E-value=0.00039 Score=77.01 Aligned_cols=89 Identities=24% Similarity=0.235 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhhhc--CCCeEEeccCcccHHHHHHHH-------HHHhchhhh------------hhhcCC------
Q 012824 93 LVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVA-------SRYLADSEA------------ACQWGS------ 145 (456)
Q Consensus 93 ~~lr~~L~~AV~~rl~s--d~~vgv~LSGGlDSs~Iaala-------~~~~~~~~~------------~~~~~~------ 145 (456)
+++.....-.+..+++. -..+.+.||||+||+++|+++ .+.+..+.. ...+.+
T Consensus 329 ~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (700)
T PLN02339 329 EEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEF 408 (700)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhh
Confidence 56666666677777653 345779999999999988886 333311000 000000
Q ss_pred --c-ccceeccCCCCc--hHHHHHHHHHHhCCCceEEEeCh
Q 012824 146 --Q-LHSFCIGLEGSP--DLKAAREVADYLGTRHHEFHFTV 181 (456)
Q Consensus 146 --~-l~tfsig~~~~~--e~~~A~~vA~~lg~~h~~~~~~~ 181 (456)
+ +++++++...+. ....|+++|+.+|+.|+++.+++
T Consensus 409 ~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~ 449 (700)
T PLN02339 409 AKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDG 449 (700)
T ss_pred hcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHH
Confidence 1 455555544443 56789999999999999998864
No 105
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.69 E-value=8.4e-05 Score=69.23 Aligned_cols=110 Identities=17% Similarity=0.259 Sum_probs=54.3
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc---CCCCchHHHHHHHHHHhCC-----CceEEEeCh
Q 012824 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG---LEGSPDLKAAREVADYLGT-----RHHEFHFTV 181 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig---~~~~~e~~~A~~vA~~lg~-----~h~~~~~~~ 181 (456)
..++-++||||+||.+-+.++.+.. -.+...++. +.+......++++++.+.. ....+.++-
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~krG----------~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~ 72 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKRG----------CEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDF 72 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCBT-----------EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECH
T ss_pred CceEEEEecCCccHHHHHHHHHHCC----------CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECc
Confidence 4567899999999999888888754 345444432 3333334556666666532 233333333
Q ss_pred hhHHHHHHHHHHhhccCCcccccchHHHHHHH-HHHHhCCCcEEEEcCchhhh
Q 012824 182 QEGIDALEEVIYHIETYDVTTIRASTPMFLMS-RKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 182 ~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~-~~a~~~g~~vvLsG~GgDEl 233 (456)
.++ +.++.... ....+++.+-..||.++ +.|.+.|++.++||+--..+
T Consensus 73 ~~~---~~~i~~~~-~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQv 121 (197)
T PF02568_consen 73 TEV---QKEILRGV-KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQV 121 (197)
T ss_dssp HHH---HHHHHHHS--GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSST
T ss_pred HHH---HHHHHhcC-CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHH
Confidence 333 33333222 11223444444555544 45667899999999864443
No 106
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=97.63 E-value=0.00033 Score=73.41 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=54.1
Q ss_pred HHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCC-Cc-hHHHHHHHHHHhCCCceE
Q 012824 101 KAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEG-SP-DLKAAREVADYLGTRHHE 176 (456)
Q Consensus 101 ~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~-~~-e~~~A~~vA~~lg~~h~~ 176 (456)
+.+...+....++.+++|||.||++++.++.+..... .+.++.++++. ... ++ +..+++.+|+.+|++++.
T Consensus 6 ~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~-----~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~ 80 (436)
T PRK10660 6 LTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTEN-----PGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVV 80 (436)
T ss_pred HHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhc-----CCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEE
Confidence 3444556666789999999999999999887643110 02356677664 332 33 458899999999999998
Q ss_pred EEeCh
Q 012824 177 FHFTV 181 (456)
Q Consensus 177 ~~~~~ 181 (456)
+.++.
T Consensus 81 ~~~~~ 85 (436)
T PRK10660 81 ERVQL 85 (436)
T ss_pred EEEec
Confidence 87764
No 107
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.62 E-value=0.0004 Score=69.79 Aligned_cols=114 Identities=23% Similarity=0.234 Sum_probs=76.3
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC-CchHHHHHHHHHHhCCC-ceEEEeChhhHHHH
Q 012824 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG-SPDLKAAREVADYLGTR-HHEFHFTVQEGIDA 187 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~-~~e~~~A~~vA~~lg~~-h~~~~~~~~~~~~~ 187 (456)
-..|+++.|||||+|++.-.+.+... ..+.|||...-. .+|...+++-|..+|.. |+.+....+-.-+.
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~~---------~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~~~y 74 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKGG---------AEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFVEDY 74 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhcC---------ceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHHHHH
Confidence 35789999999999999999987652 478899976544 47999999999999987 66666654433344
Q ss_pred HHHHHHhh---cc-CCcccccchHHHH--HHHHHHHhCCCcEEE---EcCchhhh
Q 012824 188 LEEVIYHI---ET-YDVTTIRASTPMF--LMSRKIKSLGVKMVI---SGEGSDEI 233 (456)
Q Consensus 188 l~~~i~~~---e~-~~~~~i~~~~~~~--~l~~~a~~~g~~vvL---sG~GgDEl 233 (456)
+-.++... |. |...+. -+.|+. .+-+.|++.|+..+- ||-|-|.+
T Consensus 75 i~~~i~ana~Yeg~YpL~Ta-laRPLIak~lVe~A~k~ga~avaHGcTGKGNDQv 128 (403)
T COG0137 75 IFPAIKANALYEGVYPLGTA-LARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQV 128 (403)
T ss_pred HHHHHHhhceeeccccccch-hhHHHHHHHHHHHHHHcCCCEEEecCCCCCCcee
Confidence 44444432 33 433221 112221 234557788888775 67777876
No 108
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.00017 Score=71.84 Aligned_cols=68 Identities=26% Similarity=0.363 Sum_probs=56.1
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCC----eEEEecccchhhhc-cCccEEeCCCcEEEecCC
Q 012824 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDG----SIWFASEMKALSDD-CERFISFPPGHIYSSKQG 70 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~----~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~~ 70 (456)
+++|.|+.++.-. +.|+.+|||+|.|||..+...+. .++||||-.++... ..-.+.+.||+++.++..
T Consensus 163 ~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~ 235 (474)
T KOG0572|consen 163 LLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRN 235 (474)
T ss_pred hcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecC
Confidence 3789999998754 56999999999999999875332 79999999988876 567788999999887643
No 109
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.58 E-value=6.2e-05 Score=80.88 Aligned_cols=90 Identities=26% Similarity=0.256 Sum_probs=78.9
Q ss_pred cccccCCceecCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHHHhcccCCCCCCChhhhhccccCCCCCCchhhhH-
Q 012824 270 KSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKHILYRQKEQFSDGVGYSWID- 348 (456)
Q Consensus 270 r~~~a~gle~r~PflD~~lve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~- 348 (456)
+ +|+.++|.|+||+|. ++++.+||.+.|... ..+|+++|.+.+. .+|+.++.|+|.+|..+.. .|..
T Consensus 419 ~-~m~~~le~Rvpf~~~--~~l~~~i~~~~K~~~----~~gk~~lr~~~~~----~~p~~~~~r~k~~~~~~~~-~~~~~ 486 (542)
T COG0367 419 R-SMAKKLERRVPFSDG--VELPEEIPWREKIAF----GYGKGILRIAYEK----ILPDFILSRKKLGFPKPLW-GRYYE 486 (542)
T ss_pred h-hhhhhhheecccccc--hhhHhhCChhhhhhc----CCcchhhHhhhhc----cCcHHHhcccccCCCcccc-ccccc
Confidence 7 999999999999999 999999999999975 3579999999999 9999999999999999976 4553
Q ss_pred -HHHHHHHHhcChHHHhcCCCCCC
Q 012824 349 -GLRDHANKQVTDAMLANSSFVYP 371 (456)
Q Consensus 349 -~l~~~~~~~l~d~~l~~~~~~~~ 371 (456)
...+++.+++.++.....++++.
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~ 510 (542)
T COG0367 487 NSLLLWLYRLIEEEFSPEYPLVDL 510 (542)
T ss_pred chHHHHHHHHHhhhcccccchhhh
Confidence 36789999998887777777775
No 110
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=97.15 E-value=0.0031 Score=62.45 Aligned_cols=121 Identities=14% Similarity=0.134 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC-CCch-HHHHHHHHHHhCC
Q 012824 95 LRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPD-LKAAREVADYLGT 172 (456)
Q Consensus 95 lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~e-~~~A~~vA~~lg~ 172 (456)
-...|++++.. . +.+ .+++|||.||++++.++.+.+... ..++..+++... ..+| ..+..++|+.+|+
T Consensus 8 si~ilRe~~~~-f--~~~-vv~~SGGKDS~VlLhLa~kaf~~~------~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl 77 (294)
T TIGR02039 8 AIHIIREVAAE-F--ERP-VMLYSIGKDSSVLLHLARKAFYPG------PLPFPLLHVDTGWKFREMIAFRDHMVAKYGL 77 (294)
T ss_pred HHHHHHHHHHh-c--CCc-EEEEecChHHHHHHHHHHHHhccc------CCCeEEEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 33445555443 1 233 678999999999999999876421 135666666321 1344 5788999999999
Q ss_pred CceEEEeChhhHHHHHHHHHHhhccCCc-cc-ccchHHHHHHHHHHHhCCCcEEEEcCchhhh
Q 012824 173 RHHEFHFTVQEGIDALEEVIYHIETYDV-TT-IRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 173 ~h~~~~~~~~~~~~~l~~~i~~~e~~~~-~~-i~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
+++.+... +... .....+.. +. .....-...+.+.+.+.|.+++++|.--||-
T Consensus 78 ~l~v~~~~--~~~~------~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe 132 (294)
T TIGR02039 78 RLIVHSNE--EGIA------DGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEE 132 (294)
T ss_pred CEEEEech--hhhh------cCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhh
Confidence 98877543 2111 01111110 00 1111223456677778899999999999885
No 111
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.05 E-value=0.0015 Score=76.03 Aligned_cols=65 Identities=22% Similarity=0.183 Sum_probs=53.0
Q ss_pred cceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccC-ccE--EeCCCcEEEec
Q 012824 2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCE-RFI--SFPPGHIYSSK 68 (456)
Q Consensus 2 L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~-~I~--~lpPG~~~~~~ 68 (456)
++|.|++++-|. +.+++.|||.|.|||-|....++.+++|||..++--.-. -|+ .|.||..+.++
T Consensus 336 wdGpaaiv~~~g--~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id 403 (1485)
T PRK11750 336 WDGPAGIVMTDG--RYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVID 403 (1485)
T ss_pred CCCCEEEEEEeC--CEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEe
Confidence 589999999985 799999999999999776666778999999887654333 344 79999998764
No 112
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=97.05 E-value=0.003 Score=60.98 Aligned_cols=60 Identities=7% Similarity=0.047 Sum_probs=45.9
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHHHhCCCceEEEeC
Q 012824 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGTRHHEFHFT 180 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~~lg~~h~~~~~~ 180 (456)
.++.+.+|||.||++++.++.+.. .++..+.+. +.-..-.++++++++++|++++++...
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~~----------~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~ 102 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQVD----------PDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPD 102 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 358999999999999999998854 356666653 332224678999999999998887654
No 113
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.0059 Score=58.92 Aligned_cols=76 Identities=24% Similarity=0.259 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceec--cCCCCchHHHHHH-HHHH
Q 012824 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAARE-VADY 169 (456)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~e~~~A~~-vA~~ 169 (456)
+.+.+...+.++.++. +..+-+.||||+|||..|.++.+..+ .++++.-+ |+-...|.+...+ ..++
T Consensus 5 ~~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~AiG---------d~l~cvfVD~GLlR~~E~e~V~~~f~~~ 74 (315)
T COG0519 5 ENFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAIG---------DQLTCVFVDHGLLRKGEAEQVVEMFREH 74 (315)
T ss_pred HHHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHhh---------cceEEEEecCCcccCCcHHHHHHHHHhh
Confidence 3455555566677765 67899999999999999999998874 46776655 3323345444443 4445
Q ss_pred hCCCceEEE
Q 012824 170 LGTRHHEFH 178 (456)
Q Consensus 170 lg~~h~~~~ 178 (456)
+|++...+.
T Consensus 75 ~~~nl~~Vd 83 (315)
T COG0519 75 LGLNLIVVD 83 (315)
T ss_pred cCCceEEEc
Confidence 777765553
No 114
>PRK08557 hypothetical protein; Provisional
Probab=96.83 E-value=0.016 Score=60.36 Aligned_cols=58 Identities=22% Similarity=0.325 Sum_probs=43.2
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceec--cCCCCchHHHHHHHHHHhCCCceEEE
Q 012824 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFH 178 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~e~~~A~~vA~~lg~~h~~~~ 178 (456)
.++.+.+|||.||++++.++.+.. .++..+++ |++-..-..+++++++.+|++.+.+.
T Consensus 182 ~~i~vsfSGGKDS~vlL~L~~~~~----------~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~ 241 (417)
T PRK08557 182 YAINASFSGGKDSSVSTLLAKEVI----------PDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLD 241 (417)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHhC----------CCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 468899999999999998887654 34555554 33322236789999999999987765
No 115
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=96.66 E-value=0.0066 Score=59.15 Aligned_cols=60 Identities=27% Similarity=0.359 Sum_probs=49.7
Q ss_pred eeEEEEEEECCCCEEEEEeccCCCccEEEEEec-----------------CCeEEEecccchhhhccCccEEeCCCcEEE
Q 012824 4 GMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL-----------------DGSIWFASEMKALSDDCERFISFPPGHIYS 66 (456)
Q Consensus 4 G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~-----------------~~~~~faSeik~L~~~~~~I~~lpPG~~~~ 66 (456)
|.|+|++.|. .+++++||+. .+||||.... ++.++||||.-+... +.+.+|||+.+.
T Consensus 180 ~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE~l~~~~---~w~~v~~ge~~~ 253 (257)
T cd01908 180 GRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEPLTDDE---GWTEVPPGELVV 253 (257)
T ss_pred eEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeCCCCCCC---CceEeCCCEEEE
Confidence 7899999886 6799999999 8999999753 368999999655443 799999999988
Q ss_pred ecC
Q 012824 67 SKQ 69 (456)
Q Consensus 67 ~~~ 69 (456)
++.
T Consensus 254 i~~ 256 (257)
T cd01908 254 VSE 256 (257)
T ss_pred EeC
Confidence 754
No 116
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=96.64 E-value=0.006 Score=55.06 Aligned_cols=106 Identities=20% Similarity=0.135 Sum_probs=55.7
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCccccee--ccCCCCch-HHHHHHHHHHhCCCceEEEeChhhHHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFC--IGLEGSPD-LKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfs--ig~~~~~e-~~~A~~vA~~lg~~h~~~~~~~~~~~~~l 188 (456)
++.+.+|||-||++++.++.+... ++..+. .+.+ .+| ..+++++++.+|++.+.+... ......+
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~----------~~~vv~~dtg~e-~p~t~~~~~~~~~~~~~~i~~~~~~-~~~~~~~ 68 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGR----------KVPVVFIDTGYE-FPETYEFVDELAKRYGIPIIVYRPP-ETFEQRF 68 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHT----------TCEEEEEE-STB--HHHHHHHHHHHHHTTCEEEEEETT-SHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcC----------CCcEEEEecCcc-CHHHHHHHHHHHhhhhhhhhhcccc-cchhhcc
Confidence 367999999999999999988774 333333 3332 344 589999999999985544433 2222222
Q ss_pred HHHHHhhccCCcccccc-hHH---HHHHHHHHHhCCCcEEEEcCchhhhc
Q 012824 189 EEVIYHIETYDVTTIRA-STP---MFLMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 189 ~~~i~~~e~~~~~~i~~-~~~---~~~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
...- .+.. ..+. ... .--+.+.+++.+..++++|.=+||=-
T Consensus 69 ~~~~----~~~~-~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~ 113 (174)
T PF01507_consen 69 ILYG----WPSK-LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESP 113 (174)
T ss_dssp HHHH----HSTT-HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTT
T ss_pred cccc----ccch-hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchh
Confidence 1111 0110 0100 000 11233455667778999999999843
No 117
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=96.55 E-value=0.008 Score=58.39 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=48.1
Q ss_pred EEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeEE
Q 012824 6 FSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLR 73 (456)
Q Consensus 6 Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~~ 73 (456)
|+|++-|. .++++.||+. ||||... ++.++||||- |-.. ..++.+|||+.+.+++++++
T Consensus 189 ~n~~~sdg--~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l~~~-~~W~~v~pge~v~i~~~~v~ 247 (251)
T TIGR03442 189 LNLLLTDG--SRLVATRWAD---TLYWLKD-PEGVIVASEP--YDDD-PGWQDVPDRHLLSVSEDDVT 247 (251)
T ss_pred eEEEEEcC--CEEEEEEeCC---eEEEEEc-CCEEEEEeCC--cCCC-CCceEeCCCeEEEEECCcEE
Confidence 99999885 6899999987 9999986 5679999996 3322 48999999999998766543
No 118
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=96.53 E-value=0.016 Score=57.74 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=66.3
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC-CCch-HHHHHHHHHHhCCCceEEEeChhhHHHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPD-LKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~e-~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~ 189 (456)
+++++.|||.||++++.++.+.+... ..++..+++... .-+| ..+..++++.+|+++++... ++.++
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~------~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~--~~~~~--- 107 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPT------RPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHN--PDGIA--- 107 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhccc------CCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecC--hHHHH---
Confidence 45799999999999999999875321 135666766432 1244 67889999999998876543 22211
Q ss_pred HHHHhhccCCc-ccccc-hHHHHHHHHHHHhCCCcEEEEcCchhh
Q 012824 190 EVIYHIETYDV-TTIRA-STPMFLMSRKIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 190 ~~i~~~e~~~~-~~i~~-~~~~~~l~~~a~~~g~~vvLsG~GgDE 232 (456)
. ....+.. +...+ ..-...+.+.+.+.|.+++++|.=-||
T Consensus 108 ~---G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE 149 (312)
T PRK12563 108 R---GIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDE 149 (312)
T ss_pred h---CCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHH
Confidence 1 1111110 00001 112234556666778999999988888
No 119
>PRK13794 hypothetical protein; Provisional
Probab=96.40 E-value=0.027 Score=59.84 Aligned_cols=60 Identities=25% Similarity=0.262 Sum_probs=44.5
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceec--cCCCCchHHHHHHHHHHhCCCceEEE
Q 012824 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFH 178 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~e~~~A~~vA~~lg~~h~~~~ 178 (456)
..++.+.+|||.||++++.++.+.+. .++..+.+ |++-....++++++++.+|++.+.+.
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~~---------~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~ 308 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKALG---------INFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTK 308 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHhC---------CCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEc
Confidence 35799999999999999998887642 34555554 33322346789999999999877664
No 120
>PRK13795 hypothetical protein; Provisional
Probab=96.33 E-value=0.015 Score=64.01 Aligned_cols=61 Identities=31% Similarity=0.413 Sum_probs=46.0
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceec--cCCCCchHHHHHHHHHHhCCCceEEEeC
Q 012824 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFT 180 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~e~~~A~~vA~~lg~~h~~~~~~ 180 (456)
+.++.+.+|||.||++++.++.+... ++..+.+ |++.....++++++++.+|++++.+...
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~~----------~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~ 305 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREALK----------DFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAG 305 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhCC----------CcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEccc
Confidence 45899999999999999999987652 3555544 3332335689999999999998776543
No 121
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=96.25 E-value=0.036 Score=52.75 Aligned_cols=60 Identities=27% Similarity=0.197 Sum_probs=41.1
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC-------CCchHHHHHHHHHHhCCCceEEEeCh
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-------GSPDLKAAREVADYLGTRHHEFHFTV 181 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-------~~~e~~~A~~vA~~lg~~h~~~~~~~ 181 (456)
++.+++|||.||++-+..+.+.. ..+..+++--. ...+...++.+|+.+|++++.+..+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~~----------~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEEH----------EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHcC----------eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 36889999999999877666542 12222232111 13477899999999999998877543
No 122
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=96.23 E-value=0.025 Score=57.78 Aligned_cols=112 Identities=20% Similarity=0.264 Sum_probs=60.0
Q ss_pred cCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC-CCchH--HHHHHHH-HHhCCCceEEEeChhhH
Q 012824 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPDL--KAAREVA-DYLGTRHHEFHFTVQEG 184 (456)
Q Consensus 109 sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~e~--~~A~~vA-~~lg~~h~~~~~~~~~~ 184 (456)
+..++-++||||+||-+-+.++.+-+ -+++..++..+ ...|. .-+...+ ..+.-.++.+.+..-++
T Consensus 174 t~Gk~l~LlSGGIDSPVA~~l~mkRG----------~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f 243 (383)
T COG0301 174 TQGKVLLLLSGGIDSPVAAWLMMKRG----------VEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPF 243 (383)
T ss_pred cCCcEEEEEeCCCChHHHHHHHHhcC----------CEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEch
Confidence 34567799999999998887777643 45666655333 22222 2223333 33443333333333233
Q ss_pred HHHHHHHHHhh-ccCCcccccchHHHHHHHH-HHHhCCCcEEEEcCchhh
Q 012824 185 IDALEEVIYHI-ETYDVTTIRASTPMFLMSR-KIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 185 ~~~l~~~i~~~-e~~~~~~i~~~~~~~~l~~-~a~~~g~~vvLsG~GgDE 232 (456)
.+...++.... +.|-. +-.=..||-++. .|++.|+..+.||+---.
T Consensus 244 ~~v~~~i~~~~~~~y~~--v~~rR~M~riA~~iae~~g~~aIvtGEsLGQ 291 (383)
T COG0301 244 TEVQEEILEKVPESYRC--VLLKRMMYRIAEKLAEEFGAKAIVTGESLGQ 291 (383)
T ss_pred HHHHHHHHhhcCcccee--hHHHHHHHHHHHHHHHHhCCeEEEecCcchh
Confidence 33334443332 33321 111234555544 667789999999987433
No 123
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=95.92 E-value=0.021 Score=45.40 Aligned_cols=21 Identities=52% Similarity=0.665 Sum_probs=18.5
Q ss_pred eEEeccCcccHHHHHHHHHHH
Q 012824 113 FGVLLSGGLDSSLVAAVASRY 133 (456)
Q Consensus 113 vgv~LSGGlDSs~Iaala~~~ 133 (456)
+.+.+|||.||+.++.++.+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~ 21 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRL 21 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHH
Confidence 468899999999999988876
No 124
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=95.84 E-value=0.023 Score=55.53 Aligned_cols=120 Identities=21% Similarity=0.256 Sum_probs=71.8
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHH
Q 012824 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE 190 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~ 190 (456)
..+.++.|||||+|.|++.+.++. ..+.+|........|.+.|++-|-.+|..--.+.=-.+++++ +
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqG----------yeViay~AnvGQ~edfe~ar~kAlk~Gakk~~~ed~~~eFve---d 72 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQG----------YEVIAYLANVGQKEDFEEARKKALKSGAKKVVVEDVREEFVE---D 72 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcC----------ceEEEeeccccchhhHHHHHHhhhhcCceEEEehhhhHHHHh---h
Confidence 456789999999999999998864 578899765544578999999999999875544322233332 2
Q ss_pred HHHh-------hc-cCCc-c-cccchHHHHHHHHHHHhCCCcEE---EEcCchhhhccCCccccCCC
Q 012824 191 VIYH-------IE-TYDV-T-TIRASTPMFLMSRKIKSLGVKMV---ISGEGSDEIFGGYLYFHKAP 244 (456)
Q Consensus 191 ~i~~-------~e-~~~~-~-~i~~~~~~~~l~~~a~~~g~~vv---LsG~GgDElfgGy~~~~~~p 244 (456)
.++. .| .|-. + ..|..+.. ...+.|++.|++.+ -||-|-|.+-.-..+|...|
T Consensus 73 fi~Pa~qs~a~YEd~YLLGTSlaRp~ia~-~qv~va~~eg~~aVsHGcTGKGNDQvrFELt~ysl~P 138 (412)
T KOG1706|consen 73 FIWPALQSSALYEDRYLLGTSLARPVIAK-AQVDVAQREGAKAVSHGCTGKGNDQVRFELTFYSLKP 138 (412)
T ss_pred cchhhhhhcchhhceeeeccccccchhhh-hhhhHHhhcCceeeecccccCCCcceeeeeeeeccCC
Confidence 2221 12 2211 1 11111111 11233455566644 48889998854444555444
No 125
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=95.73 E-value=0.092 Score=49.48 Aligned_cols=58 Identities=9% Similarity=0.113 Sum_probs=42.6
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC-CCch-HHHHHHHHHHhCCCceEEE
Q 012824 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPD-LKAAREVADYLGTRHHEFH 178 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~e-~~~A~~vA~~lg~~h~~~~ 178 (456)
..+.+..|||.||++++-++.+.. .++..+.+... .-+| .++.+++++.+|+..+.+.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~----------~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~ 73 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKIS----------PDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYK 73 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 468999999999999999998765 35666655432 1244 4679999999998755543
No 126
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.11 Score=53.29 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=53.6
Q ss_pred HHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceec--cCCCCchHHHHHHHHHHhCCCceEEEe
Q 012824 102 AVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHF 179 (456)
Q Consensus 102 AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~e~~~A~~vA~~lg~~h~~~~~ 179 (456)
-+++++. +..+-+++|||+|||+.++++.+.... .++++..+ |+-.-.|....++.-..||++.+.+..
T Consensus 223 ~i~k~vG-~~~Vl~~vSGgvdStV~a~Ll~~alg~--------~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~a 293 (552)
T KOG1622|consen 223 EIRKWVG-DYKVLVAVSGGVDSTVCAALLRRALGP--------DRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDA 293 (552)
T ss_pred HHHHHhc-ccceEEEecCCchHHHHHHHHHHhhCC--------CceEEEEecccchhhhHHHHHHHHHHHcCCceEEeec
Confidence 3445554 677899999999999999999987742 46777765 454456777777777779999988876
Q ss_pred Chh
Q 012824 180 TVQ 182 (456)
Q Consensus 180 ~~~ 182 (456)
+.+
T Consensus 294 s~~ 296 (552)
T KOG1622|consen 294 SET 296 (552)
T ss_pred hHH
Confidence 543
No 127
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=94.78 E-value=0.36 Score=46.10 Aligned_cols=64 Identities=9% Similarity=0.018 Sum_probs=46.1
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC-CCch-HHHHHHHHHHhCCCceEEEeChh
Q 012824 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPD-LKAAREVADYLGTRHHEFHFTVQ 182 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~e-~~~A~~vA~~lg~~h~~~~~~~~ 182 (456)
..++.+..|||.||++++-++++... .++..+.+... ..+| .+++.++++++|+..+.+...+.
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~---------~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~~ 90 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISE---------PMIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDGC 90 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhC---------CCCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCCc
Confidence 34689999999999999999998752 24566665422 1234 57899999999976666655554
No 128
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=94.65 E-value=0.12 Score=46.63 Aligned_cols=62 Identities=24% Similarity=0.454 Sum_probs=45.3
Q ss_pred ceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc--------------------------cCcc
Q 012824 3 DGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD--------------------------CERF 56 (456)
Q Consensus 3 ~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~--------------------------~~~I 56 (456)
+|+|.|.|=|+ +++|.+..|+-|.-|.|..++ +..|+...+|-+-.. .+++
T Consensus 99 EGdfcffiE~k-ng~L~l~Tds~G~~pv~lV~~--~~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na 175 (201)
T PF09147_consen 99 EGDFCFFIEDK-NGELTLITDSRGFNPVYLVQS--KFIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNA 175 (201)
T ss_dssp -SSEEEEEEET-TSEEEEEE-SSSSS-EEEEES--SSEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTE
T ss_pred cCceEEEEecC-CCcEEEEecCCCCceEEEEec--CceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccc
Confidence 69999998665 699999999999999999764 578888877765321 2588
Q ss_pred EEeCCCcEEEe
Q 012824 57 ISFPPGHIYSS 67 (456)
Q Consensus 57 ~~lpPG~~~~~ 67 (456)
.++.||++-.+
T Consensus 176 ~RlkPGsin~l 186 (201)
T PF09147_consen 176 QRLKPGSINVL 186 (201)
T ss_dssp EEE-SSEEEEE
T ss_pred eecCCCceEEE
Confidence 99999998654
No 129
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.59 E-value=0.31 Score=47.67 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=43.5
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHHHhCCCceEEEe
Q 012824 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGTRHHEFHF 179 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~~lg~~h~~~~~ 179 (456)
+.++.+..|||.||++++.++.+... ++..+.+. +.-..-..++.++++.+|++..+...
T Consensus 39 ~~~~~~~~S~Gkds~V~l~L~~k~~~----------~~~vif~DTg~~f~Et~~~~d~~~~~~~~~l~~~~~ 100 (261)
T COG0175 39 SNPVVVSFSGGKDSTVLLHLAAKAFP----------DFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYRP 100 (261)
T ss_pred CCCeEEEecCchhHHHHHHHHHHhcC----------CCcEEEEeCCCcCHHHHHHHHHHHHHcCCeEEEecC
Confidence 45679999999999999999998763 34555443 22112368999999999977655543
No 130
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=94.55 E-value=0.31 Score=51.15 Aligned_cols=122 Identities=21% Similarity=0.214 Sum_probs=62.2
Q ss_pred cCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC-CCch-HH-------HHHHHHHHhCCCceEEEe
Q 012824 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPD-LK-------AAREVADYLGTRHHEFHF 179 (456)
Q Consensus 109 sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~e-~~-------~A~~vA~~lg~~h~~~~~ 179 (456)
.+.|+.|.+|||-||++++.++-+.+.... .....+.++.++...- +.++ .. ..+..|+..|++.....+
T Consensus 12 ~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp-~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~lpi~~~~v 90 (447)
T TIGR03183 12 DDIPWVVGYSGGKDSTAVLQLIWNALAALP-AEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGLPIEPHRL 90 (447)
T ss_pred cCCceEEEeCCCHHHHHHHHHHHHHHHhcc-ccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCCCeEEEec
Confidence 567899999999999999988876542100 0000012333332210 1232 12 345566777877665555
Q ss_pred ChhhHHHHHHHHHHhhccCCcc--cccch------HHH-HHHHHHHHhCCCcEEEEcCchhhh
Q 012824 180 TVQEGIDALEEVIYHIETYDVT--TIRAS------TPM-FLMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 180 ~~~~~~~~l~~~i~~~e~~~~~--~i~~~------~~~-~~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
.+..-.+.+..++. ..+..+ ..+.. .|+ -++.+.+++.|..++++|.=.||=
T Consensus 91 ~P~~~~~Fwv~liG--rG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES 151 (447)
T TIGR03183 91 TPEIKDTFWVNLIG--KGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAES 151 (447)
T ss_pred CCCcchHHHHHHhc--CCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhH
Confidence 55321222333332 112111 12211 122 123344455677889999888874
No 131
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=94.49 E-value=0.16 Score=50.67 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=38.3
Q ss_pred cCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCC--chHHHHHHHHH
Q 012824 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVAD 168 (456)
Q Consensus 109 sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~e~~~A~~vA~ 168 (456)
.-..|+|.+|||-||++++-++.+...+.+ ..+|..+.+++++. --..+.+++-.
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~-----~~~i~VlfiD~E~QYs~TidyV~em~~ 82 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENG-----RDKISVLFIDWEAQYSCTIDYVQEMRE 82 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhC-----CCceEEEEEcchhhhhhHHHHHHHHHh
Confidence 345689999999999999999988776542 13677777777652 23445444444
No 132
>PRK06850 hypothetical protein; Provisional
Probab=94.48 E-value=0.49 Score=50.40 Aligned_cols=134 Identities=18% Similarity=0.171 Sum_probs=67.6
Q ss_pred HHHHHHHHhhh-cCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccC-CCCchH--------HHHHHHH
Q 012824 98 AFEKAVVKRLM-TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL-EGSPDL--------KAAREVA 167 (456)
Q Consensus 98 ~L~~AV~~rl~-sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~-~~~~e~--------~~A~~vA 167 (456)
.+.+.|+.... .+.|+.|.+|||-||++++.++.+....... .....+++.++... -+.++. ...+..|
T Consensus 21 ~~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~-e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a 99 (507)
T PRK06850 21 ELIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPP-EKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAA 99 (507)
T ss_pred HHHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcch-hccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHH
Confidence 33345555443 4779999999999999999888765421100 00002333333221 112332 2334456
Q ss_pred HHhCCCceEEEeChhhHHHHHHHHHHhhccCCcc--cccchH------HH-HHHHHHHHhCCCcEEEEcCchhhhc
Q 012824 168 DYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVT--TIRAST------PM-FLMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 168 ~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~--~i~~~~------~~-~~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
+..|++.+...+++.---..+..++. ..+..| ..|.++ |+ -++.+.+++.|-.++++|.=.||=.
T Consensus 100 ~~~glpi~~~~v~P~~~~sFwv~liG--rG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~ 173 (507)
T PRK06850 100 KKQGLPITPHKLTPKINDTFWVNLIG--KGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESA 173 (507)
T ss_pred HHcCCceEEEeeCCCcchhHHHHHhc--CCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccH
Confidence 77788876655555421122333332 112111 122211 22 1233333455777889998888754
No 133
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=94.20 E-value=0.16 Score=54.78 Aligned_cols=68 Identities=28% Similarity=0.532 Sum_probs=57.8
Q ss_pred CcceeEEEEEEECCC-CEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeE
Q 012824 1 MLDGMFSFVLLDTRD-KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGL 72 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~-~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~ 72 (456)
+|.|.||+++.|.+. ++++++|-- .||..+.. +|..++||++-+++...+.+..|..|.+..+..+++
T Consensus 150 ~l~Gsyal~~~~~~~p~~i~~ar~~---sPL~iG~g-~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~v 218 (597)
T COG0449 150 RLEGSYALLCTHSDFPDELVAARKG---SPLVIGVG-EGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGV 218 (597)
T ss_pred HhcceeEEEEEecCCCCeEEEEcCC---CCeEEEec-CCcceEecChhhhhhhhceEEEeCCCCEEEEECCcE
Confidence 589999999999877 789999864 89999986 677888999999999999999999999876654433
No 134
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=92.91 E-value=0.6 Score=48.69 Aligned_cols=126 Identities=25% Similarity=0.392 Sum_probs=67.5
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchh---------hhh---h------hc---------CCcccceeccCCCCc-h-HHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADS---------EAA---C------QW---------GSQLHSFCIGLEGSP-D-LKA 162 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~---------~~~---~------~~---------~~~l~tfsig~~~~~-e-~~~ 162 (456)
-.-+.||||+|||++|++........ +.. . ++ +.-+.|.-+|.+.+. | ..-
T Consensus 351 GfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~r 430 (706)
T KOG2303|consen 351 GFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVNDISYTPTDPADLCNRILYTCYMGSENSSKETRRR 430 (706)
T ss_pred ceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcCCCcCCCCHHHHHHhhhhhheeccccccHHHHHH
Confidence 35578999999999998764432111 000 0 00 001223334545443 3 567
Q ss_pred HHHHHHHhCCCceEEEeChhhHHHHHHHHHHhh--ccC--Ccc--c---------ccch---HHHHHHHHHH---H-hCC
Q 012824 163 AREVADYLGTRHHEFHFTVQEGIDALEEVIYHI--ETY--DVT--T---------IRAS---TPMFLMSRKI---K-SLG 220 (456)
Q Consensus 163 A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~--e~~--~~~--~---------i~~~---~~~~~l~~~a---~-~~g 220 (456)
|+++|+.+|.-|..+.++. .+.++-.+.... .+| ... + +.+- +-.|++++.+ + ..|
T Consensus 431 ak~La~~igs~H~~i~iD~--~vsavl~lF~~vtGk~P~f~~~ggsn~enlaLQNiQARiRMvLaylfAqL~~wvr~~~G 508 (706)
T KOG2303|consen 431 AKELANQIGSYHIDLNIDT--AVSAVLSLFNLVTGKTPRFKSHGGSNRENLALQNIQARIRMVLAYLFAQLLLWVRGRPG 508 (706)
T ss_pred HHHHHHhhcceeeeeeehH--HHHHHHHHHHHHhCCCcceecCCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999998888765 233332222111 111 110 0 1110 1124445543 1 245
Q ss_pred CcEEEEcCchhhhccCCcc
Q 012824 221 VKMVISGEGSDEIFGGYLY 239 (456)
Q Consensus 221 ~~vvLsG~GgDElfgGy~~ 239 (456)
--.||.-..-||-+-||..
T Consensus 509 glLVLGSaNVDE~LrGYLT 527 (706)
T KOG2303|consen 509 GLLVLGSANVDESLRGYLT 527 (706)
T ss_pred ceEEEecCccchHhhhhhh
Confidence 5677777788999999964
No 135
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=92.62 E-value=0.91 Score=42.87 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=45.6
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccc-eeccCCC-------CchHHHHHHHHHHhCCCceEEEeChh-
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHS-FCIGLEG-------SPDLKAAREVADYLGTRHHEFHFTVQ- 182 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~t-fsig~~~-------~~e~~~A~~vA~~lg~~h~~~~~~~~- 182 (456)
.+.+++|||-||+.-+..+-+.. ..|.. .++-.+. .+...++...|+.+|+++.....+.+
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G----------~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~ 71 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEG----------HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEE 71 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcC----------CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccc
Confidence 36789999999987666665542 23322 2322211 24678999999999999877766551
Q ss_pred -hHHHHHHHHHHh
Q 012824 183 -EGIDALEEVIYH 194 (456)
Q Consensus 183 -~~~~~l~~~i~~ 194 (456)
.-++.+.+++..
T Consensus 72 e~eve~L~~~l~~ 84 (223)
T COG2102 72 EREVEELKEALRR 84 (223)
T ss_pred hhhHHHHHHHHHh
Confidence 134444444443
No 136
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=91.47 E-value=0.44 Score=45.28 Aligned_cols=58 Identities=24% Similarity=0.203 Sum_probs=33.6
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCccc-ceeccCC--C-----CchHHHHHHHHHHhCCCceEEEeC
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLH-SFCIGLE--G-----SPDLKAAREVADYLGTRHHEFHFT 180 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~-tfsig~~--~-----~~e~~~A~~vA~~lg~~h~~~~~~ 180 (456)
++.++.|||-||++-+..+.+. - ++. .+|+-.+ + ..-....+..|+.+|+++..+..+
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~-~----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~ 67 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ-H----------EVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTS 67 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT------------EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE-
T ss_pred cEEEEEcCcHHHHHHHHHHHHh-C----------CccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEcc
Confidence 3678999999999877666554 2 221 2222111 1 123557888899999999988876
No 137
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=91.41 E-value=1.5 Score=41.84 Aligned_cols=57 Identities=21% Similarity=0.161 Sum_probs=37.6
Q ss_pred eEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC-------CCchHHHHHHHHHHhCCCceEEEe
Q 012824 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-------GSPDLKAAREVADYLGTRHHEFHF 179 (456)
Q Consensus 113 vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-------~~~e~~~A~~vA~~lg~~h~~~~~ 179 (456)
+.++.|||-||+.-+..+.+. -+ .+..+|+-.. ........+..|+.+|+++..+..
T Consensus 3 ~~~l~SGGKDS~~al~~a~~~-~~---------v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 3 VAALISGGKDSCLALYHALKE-HE---------VISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred EEEEecCcHHHHHHHHHHHHh-Ce---------eEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 568999999999877766654 21 2222232111 123567889999999999876543
No 138
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=64.15 E-value=13 Score=36.41 Aligned_cols=64 Identities=28% Similarity=0.465 Sum_probs=29.6
Q ss_pred eeEEEEEEECCCCEEEEEecc----CCCccEE-------------EE---EecCCeEEEecccchhhhccCccEEeCCCc
Q 012824 4 GMFSFVLLDTRDKSFIAARDA----IGVTPLY-------------MG---WGLDGSIWFASEMKALSDDCERFISFPPGH 63 (456)
Q Consensus 4 G~Fa~~i~D~~~~~l~laRD~----~G~~PLy-------------y~---~~~~~~~~faSeik~L~~~~~~I~~lpPG~ 63 (456)
|.+.|++.|. ..|++.|+. .-.++.| +. ...+..+++||| .|.. -+.-..||+|+
T Consensus 170 ~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSe--PLt~-~e~W~~vp~g~ 244 (271)
T PF13230_consen 170 GSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASE--PLTD-DEDWEPVPPGS 244 (271)
T ss_dssp EEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEESS-------SS--EE--SSE
T ss_pred eeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEec--cCCC-CCCeEEcCCCc
Confidence 7789999997 589999982 1122211 00 112456778887 4442 24689999999
Q ss_pred EEEecCCeE
Q 012824 64 IYSSKQGGL 72 (456)
Q Consensus 64 ~~~~~~~~~ 72 (456)
.+.+..|++
T Consensus 245 ~l~~~~G~v 253 (271)
T PF13230_consen 245 LLVFRDGEV 253 (271)
T ss_dssp EEE------
T ss_pred EEEEecccc
Confidence 999987765
No 139
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=62.38 E-value=85 Score=32.69 Aligned_cols=123 Identities=18% Similarity=0.248 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCce
Q 012824 96 RKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHH 175 (456)
Q Consensus 96 r~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~ 175 (456)
++.|++.+..-. ..+-++.+|-|+=++..+ +..+.+. +..+.++ ++.-.+-..+.++++.++|++-.
T Consensus 79 ~~~le~~iaal~--ga~~~l~fsSGmaA~~~a--l~~L~~~-------g~~iV~~--~~~Y~gT~~~l~~~~~~~gie~~ 145 (409)
T KOG0053|consen 79 RDVLESGIAALE--GAAHALLFSSGMAAITVA--LLHLLPA-------GDHIVAT--GDVYGGTLRILRKFLPKFGGEGD 145 (409)
T ss_pred hHHHHHHHHHHh--CCceEEEecccHHHHHHH--HHHhcCC-------CCcEEEe--CCCcccHHHHHHHHHHHhCceee
Confidence 344555555432 345588999999544433 2233321 1233333 33334567889999999998877
Q ss_pred EEEeChh-hHHHHHHH-H-HHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCC
Q 012824 176 EFHFTVQ-EGIDALEE-V-IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 237 (456)
Q Consensus 176 ~~~~~~~-~~~~~l~~-~-i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy 237 (456)
.+.++.- ++.+.+.+ + +-.+|+|.+|..... -.-.+.+.|++.|+.|++ |+-|++.
T Consensus 146 ~vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~-DI~~l~~la~~~g~~vvV-----DnTf~~p 204 (409)
T KOG0053|consen 146 FVDVDDLKKILKAIKENTKAVFLESPSNPLLKVP-DIEKLARLAHKYGFLVVV-----DNTFGSP 204 (409)
T ss_pred eechhhHHHHHHhhccCceEEEEECCCCCccccc-cHHHHHHHHhhCCCEEEE-----eCCcCcc
Confidence 7765432 22223332 1 112588876654321 223567888889998887 5556553
No 140
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=59.66 E-value=21 Score=32.96 Aligned_cols=50 Identities=8% Similarity=0.121 Sum_probs=35.8
Q ss_pred cccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC-CCch-HHHHHHHHHHhCCCceEEEe
Q 012824 120 GLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPD-LKAAREVADYLGTRHHEFHF 179 (456)
Q Consensus 120 GlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~-~~~e-~~~A~~vA~~lg~~h~~~~~ 179 (456)
|+||.+++.++.+..+ ++..+.+... .-+| .+++.++++.+|++.+.+..
T Consensus 2 ~~~s~Vll~L~~~~~~----------~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~ 53 (191)
T TIGR02055 2 GAEDVVLVDLAAKVRP----------DVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSP 53 (191)
T ss_pred ChHHHHHHHHHHhcCC----------CCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 7899999999998763 4556655321 1233 57899999999988766643
No 141
>PLN02309 5'-adenylylsulfate reductase
Probab=56.26 E-value=55 Score=34.73 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=38.2
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHHHhCCCceEEE
Q 012824 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGTRHHEFH 178 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~~lg~~h~~~~ 178 (456)
.++++..|||-||. ++-++++.. .++..|++. +.-..-..++.++++++|++.+.+.
T Consensus 111 ~~ia~~~SG~ed~v-ll~l~~~~~----------~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~ 169 (457)
T PLN02309 111 NDIAIAFSGAEDVA-LIEYAHLTG----------RPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMF 169 (457)
T ss_pred CCEEEEecchHHHH-HHHHHHHhC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 46888999776664 455666543 356666653 3222346889999999999876664
No 142
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=46.65 E-value=94 Score=33.06 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=38.8
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHHHhCCCceEEE
Q 012824 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGTRHHEFH 178 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~~lg~~h~~~~ 178 (456)
.++++..|||-||. ++.++.+.. .++..|++. +.-..-..++.++++++|++.+.+.
T Consensus 116 ~~iavasSG~edsv-Llhl~~~~~----------~~ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~~ 174 (463)
T TIGR00424 116 NDIAIAFSGAEDVA-LIEYAHLTG----------RPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMF 174 (463)
T ss_pred CCEEEEeccHHHHH-HHHHHHHhC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 36899999877765 555666654 356666653 3322346889999999999877553
No 143
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=40.35 E-value=1.4e+02 Score=31.12 Aligned_cols=116 Identities=14% Similarity=0.119 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceE
Q 012824 97 KAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHE 176 (456)
Q Consensus 97 ~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~ 176 (456)
+.|++++.. |. ...-++++|.|+= +|...+-...+. |..+..-.-.| ..-..+..++.+.+|++...
T Consensus 66 ~~lE~~~a~-LE-g~~~~~afsSGma--AI~~~~l~ll~~-------GD~vl~~~~~Y--G~t~~~~~~~l~~~gi~~~~ 132 (396)
T COG0626 66 DALEEALAE-LE-GGEDAFAFSSGMA--AISTALLALLKA-------GDHVLLPDDLY--GGTYRLFEKILQKFGVEVTF 132 (396)
T ss_pred HHHHHHHHH-hh-CCCcEEEecCcHH--HHHHHHHHhcCC-------CCEEEecCCcc--chHHHHHHHHHHhcCeEEEE
Confidence 344444443 22 3456899999994 333323223321 12222211111 23456788888889988776
Q ss_pred EEeChh-hHHHHHH--HH-HHhhccCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 012824 177 FHFTVQ-EGIDALE--EV-IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVIS 226 (456)
Q Consensus 177 ~~~~~~-~~~~~l~--~~-i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLs 226 (456)
+..+.. +..+.+. +. +-.+|+|.+|+.... -.-.+++.|++.|+.+++.
T Consensus 133 ~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~-DI~~i~~~A~~~g~~vvVD 185 (396)
T COG0626 133 VDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVP-DIPAIARLAKAYGALVVVD 185 (396)
T ss_pred ECCCChHHHHHHhcccCceEEEEeCCCCcccccc-cHHHHHHHHHhcCCEEEEE
Confidence 554333 3333332 11 113688877664421 2235788888888777764
No 144
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=39.07 E-value=16 Score=18.53 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=10.4
Q ss_pred ccCCceecCCCCC
Q 012824 273 SAWGVEARVPFLD 285 (456)
Q Consensus 273 ~a~gle~r~PflD 285 (456)
|.|++.+|.|-|+
T Consensus 1 mthsmrlrfptln 13 (14)
T PF08057_consen 1 MTHSMRLRFPTLN 13 (14)
T ss_pred CccceeeeccccC
Confidence 5678889999875
No 145
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=36.49 E-value=28 Score=33.17 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=32.1
Q ss_pred CCCeEEeccCcccHHHHHHHHH-----HHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEE
Q 012824 110 DVPFGVLLSGGLDSSLVAAVAS-----RYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~-----~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~ 178 (456)
..-.|++||||.||..-.-+-. +..++. ..=...+.+||-+ ..+++++++. +++--.+.
T Consensus 54 kGy~g~llSGGm~srg~VPl~kf~d~lK~lke~------~~l~inaHvGfvd---E~~~eklk~~-~vdvvsLD 117 (275)
T COG1856 54 KGYEGCLLSGGMDSRGKVPLWKFKDELKALKER------TGLLINAHVGFVD---ESDLEKLKEE-LVDVVSLD 117 (275)
T ss_pred cCceeEEEeCCcCCCCCccHHHHHHHHHHHHHh------hCeEEEEEeeecc---HHHHHHHHHh-cCcEEEEe
Confidence 4456999999999986543321 112211 0113355677754 4456677665 34433333
No 146
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=33.49 E-value=1.3e+02 Score=31.55 Aligned_cols=103 Identities=11% Similarity=0.086 Sum_probs=50.4
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEV 191 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~ 191 (456)
+-++.++.|. +.+.++++. ..+. +..|.+-...+.+ . ........+.+|++...+. ++.+ .+.+.+.
T Consensus 85 ~~~v~fsSG~-~Ai~~al~~-ll~~-------Gd~VI~~~~~y~~-t-~~~~~~~l~~~Gi~v~~vd-~~~d-~e~l~~~ 151 (437)
T PRK05613 85 VHAVAFASGQ-AAETAAILN-LAGA-------GDHIVTSPRLYGG-T-ETLFLVTLNRLGIEVTFVE-NPDD-PESWQAA 151 (437)
T ss_pred CeEEEeCCHH-HHHHHHHHH-hcCC-------CCEEEECCCccHH-H-HHHHHHHHHhcCeEEEEEC-CCCC-HHHHHHh
Confidence 4678888888 555554443 2221 1233222222211 1 2233455677888766664 1211 1223322
Q ss_pred HH------hhccCCcccccchHHHHHHHHHHHhCCCcEEEEcC
Q 012824 192 IY------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (456)
Q Consensus 192 i~------~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~ 228 (456)
+. ..|++..++. ...++-.+++.+++.|+.++..+-
T Consensus 152 l~~~tk~V~~e~~~Np~~-~v~di~~I~~la~~~gi~livD~t 193 (437)
T PRK05613 152 VQPNTKAFFGETFANPQA-DVLDIPAVAEVAHRNQVPLIVDNT 193 (437)
T ss_pred CCccCeEEEEECCCCCCC-cccCHHHHHHHHHHcCCeEEEECC
Confidence 21 1244433221 113455678888888988887654
No 147
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=32.73 E-value=2.1e+02 Score=28.97 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=37.9
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceec--cCCCC-chH-HHHHHHHHHhCCCceEEE
Q 012824 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGS-PDL-KAAREVADYLGTRHHEFH 178 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~-~e~-~~A~~vA~~lg~~h~~~~ 178 (456)
...|++.-|||-||++.|..+..+....+ .+..+...++ |..+. ++. ...+.....+|++..++.
T Consensus 51 ge~v~igasGgkdstvlA~v~~~Ln~r~~----~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs 119 (347)
T KOG2840|consen 51 GERVAIGASGGKDSTVLAYVLDALNERHD----YGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVS 119 (347)
T ss_pred CCccccccccchhHHHHHHHHHHhhhhcC----CCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEec
Confidence 34488999999999999887776543211 0122333333 22222 333 344455567899987764
No 148
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=32.54 E-value=1.8e+02 Score=29.95 Aligned_cols=58 Identities=21% Similarity=0.345 Sum_probs=30.4
Q ss_pred HHhCCCceEEEeChhhHHHHHHH----HHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEc
Q 012824 168 DYLGTRHHEFHFTVQEGIDALEE----VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (456)
Q Consensus 168 ~~lg~~h~~~~~~~~~~~~~l~~----~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG 227 (456)
...|.+...+..+.+++.+.+.+ ++. +|.+..++.. ....-.+.+.+++.|+.+++..
T Consensus 113 ~~~g~~v~~~~~d~~~l~~~i~~~~tklV~-ie~p~NPtG~-v~dl~~I~~la~~~gi~livD~ 174 (385)
T PRK08574 113 EKFGVKVVLAYPSTEDIIEAIKEGRTKLVF-IETMTNPTLK-VIDVPEVAKAAKELGAILVVDN 174 (385)
T ss_pred hccCcEEEEECCCHHHHHHhcCccCceEEE-EECCCCCCCE-ecCHHHHHHHHHHcCCEEEEEC
Confidence 55677665555554444433322 122 3555444321 1223356777888888877643
No 149
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=31.43 E-value=1.6e+02 Score=25.34 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhhc---CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCC-chHHHHHHHHHH
Q 012824 94 VLRKAFEKAVVKRLMT---DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-PDLKAAREVADY 169 (456)
Q Consensus 94 ~lr~~L~~AV~~rl~s---d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~-~e~~~A~~vA~~ 169 (456)
.+...+..+.+. +.. ....-+++|.|-|+......+..... ..+..|++++... ......+.+|+.
T Consensus 81 ~~~~al~~a~~~-~~~~~~~~~~iv~iTDG~~~~~~~~~~~~~~~---------~~i~i~~v~~~~~~~~~~~l~~la~~ 150 (172)
T PF13519_consen 81 NLYDALQEAAKM-LASSDNRRRAIVLITDGEDNSSDIEAAKALKQ---------QGITIYTVGIGSDSDANEFLQRLAEA 150 (172)
T ss_dssp -HHHHHHHHHHH-HHC-SSEEEEEEEEES-TTHCHHHHHHHHHHC---------TTEEEEEEEES-TT-EHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-HHhCCCCceEEEEecCCCCCcchhHHHHHHHH---------cCCeEEEEEECCCccHHHHHHHHHHh
Confidence 455555555543 222 24577899999987554444444332 3466666655432 224678888888
Q ss_pred hCCCceEEEeChhhHHHHHH
Q 012824 170 LGTRHHEFHFTVQEGIDALE 189 (456)
Q Consensus 170 lg~~h~~~~~~~~~~~~~l~ 189 (456)
.|-....+.-+.+++.+.+.
T Consensus 151 tgG~~~~~~~~~~~l~~~~~ 170 (172)
T PF13519_consen 151 TGGRYFHVDNDPEDLDDAFQ 170 (172)
T ss_dssp TEEEEEEE-SSSHHHHHHHH
T ss_pred cCCEEEEecCCHHHHHHHHh
Confidence 77555444334555544443
No 150
>PRK05968 hypothetical protein; Provisional
Probab=30.43 E-value=3.4e+02 Score=27.86 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEE
Q 012824 98 AFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEF 177 (456)
Q Consensus 98 ~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~ 177 (456)
.|++.+.+.... +-++.+++|. +.+.+++.+ ..+. +..|.+....+.+ -.......+...|++...+
T Consensus 67 ~le~~lA~l~g~--~~av~~~sG~-~Ai~~al~a-l~~~-------Gd~Vl~~~~~y~~--t~~~~~~~~~~~G~~v~~v 133 (389)
T PRK05968 67 AFEEMLAKLEGA--EDARGFASGM-AAISSTVLS-FVEP-------GDRIVAVRHVYPD--AFRLFETILKRMGVEVDYV 133 (389)
T ss_pred HHHHHHHHHhCC--CcEEEECCHH-HHHHHHHHH-HhCC-------CCEEEEeCCCchH--HHHHHHHHHHHcCceEEEe
Confidence 344444544433 2357778887 333333332 3321 2334333222221 1223345667788876666
Q ss_pred EeC-hhhHHHHHHH--HHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchh
Q 012824 178 HFT-VQEGIDALEE--VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSD 231 (456)
Q Consensus 178 ~~~-~~~~~~~l~~--~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgD 231 (456)
... .+++.+.+++ ++ .+|.+..+... ...+-.+++.+++.|+.+++.+--+.
T Consensus 134 d~~d~~~l~~~i~~tklV-~ie~pt~~~~~-~~dl~~i~~la~~~gi~vivD~a~a~ 188 (389)
T PRK05968 134 DGRDEEAVAKALPGAKLL-YLESPTSWVFE-LQDVAALAALAKRHGVVTMIDNSWAS 188 (389)
T ss_pred CCCCHHHHHHhcccCCEE-EEECCCCCCCc-HHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 543 2222222211 11 12333322221 12344577888888999998775443
No 151
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=29.65 E-value=1.5e+02 Score=30.60 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCce
Q 012824 96 RKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHH 175 (456)
Q Consensus 96 r~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~ 175 (456)
.+.|++.+... . ...-++.+|.|+ ++|++.+....+. |..+......+. .-....+.....+|++.+
T Consensus 57 ~~~le~~la~L-e-~g~~a~~~~SGm--aAi~~~l~~ll~~-------Gd~iv~~~~~Y~--~t~~~~~~~l~~~gv~v~ 123 (386)
T PF01053_consen 57 VRALEQRLAAL-E-GGEDALLFSSGM--AAISAALLALLKP-------GDHIVASDDLYG--GTYRLLEELLPRFGVEVT 123 (386)
T ss_dssp HHHHHHHHHHH-H-T-SEEEEESSHH--HHHHHHHHHHS-T-------TBEEEEESSSSH--HHHHHHHHCHHHTTSEEE
T ss_pred HHHHHHHHHHh-h-cccceeeccchH--HHHHHHHHhhccc-------CCceEecCCccC--cchhhhhhhhcccCcEEE
Confidence 33444444432 2 234578888888 5554434334432 123333322221 234566677777898876
Q ss_pred EEEeChhhHHHHHHHHHH------hhccCCcccccchHHHHHHHHHHHhCC-CcEEEEcC
Q 012824 176 EFHFTVQEGIDALEEVIY------HIETYDVTTIRASTPMFLMSRKIKSLG-VKMVISGE 228 (456)
Q Consensus 176 ~~~~~~~~~~~~l~~~i~------~~e~~~~~~i~~~~~~~~l~~~a~~~g-~~vvLsG~ 228 (456)
.+..+ + .+.+.+.+. .+|+|.+|+... ...-.+++.|++.| +.+++..-
T Consensus 124 ~~d~~--d-~~~l~~~l~~~t~~v~~EspsNP~l~v-~Dl~~i~~~a~~~g~~~~vVDnT 179 (386)
T PF01053_consen 124 FVDPT--D-LEALEAALRPNTKLVFLESPSNPTLEV-PDLEAIAKLAKEHGDILVVVDNT 179 (386)
T ss_dssp EESTT--S-HHHHHHHHCTTEEEEEEESSBTTTTB----HHHHHHHHHHTTT-EEEEECT
T ss_pred EeCch--h-HHHHHhhccccceEEEEEcCCCccccc-ccHHHHHHHHHHhCCceEEeecc
Confidence 66442 2 233333332 358887665432 23446788899998 88887544
No 152
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=29.01 E-value=3.8e+02 Score=27.17 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceE
Q 012824 97 KAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHE 176 (456)
Q Consensus 97 ~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~ 176 (456)
+.|++.+.+.... +.++.++||.. .+.+++. .... +..|....-.+.+ -.......++.+|++...
T Consensus 55 ~~le~~la~l~g~--~~~~~~~sG~~--ai~~~~~-ll~~-------Gd~Vl~~~~~y~~--t~~~~~~~~~~~G~~v~~ 120 (366)
T PRK08247 55 GVLEQAIADLEGG--DQGFACSSGMA--AIQLVMS-LFRS-------GDELIVSSDLYGG--TYRLFEEHWKKWNVRFVY 120 (366)
T ss_pred HHHHHHHHHHhCC--CcEEEEcCHHH--HHHHHHH-HhCC-------CCEEEEecCCcCc--HHHHHHHHhhccCceEEE
Confidence 3444455554433 34689999964 4333333 3321 1233332222222 122335566678887666
Q ss_pred EEeC-hhhHHHHHHHH--HHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEc
Q 012824 177 FHFT-VQEGIDALEEV--IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (456)
Q Consensus 177 ~~~~-~~~~~~~l~~~--i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG 227 (456)
+... .+++.+.+.+- +-.+|+|..|+.. ....-.+++.+++.|+.++...
T Consensus 121 vd~~d~~~l~~~i~~~tklv~le~P~NP~~~-~~dl~~I~~la~~~g~~lIvD~ 173 (366)
T PRK08247 121 VNTASLKAIEQAITPNTKAIFIETPTNPLMQ-ETDIAAIAKIAKKHGLLLIVDN 173 (366)
T ss_pred ECCCCHHHHHHhcccCceEEEEECCCCCCCc-HHHHHHHHHHHHHcCCEEEEEC
Confidence 6543 22222222110 0123556555322 2234457788888888777643
No 153
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=28.28 E-value=3e+02 Score=27.86 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceE
Q 012824 97 KAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHE 176 (456)
Q Consensus 97 ~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~ 176 (456)
+.|++.+.+.... +-++.+|+|. +.+..++....+. +..|.+-...+. .-....+.+++..|.+...
T Consensus 43 ~~le~~la~l~g~--~~a~~~~sG~--~Ai~~~l~~l~~~-------gd~Vl~~~~~y~--~~~~~~~~~~~~~g~~~~~ 109 (369)
T cd00614 43 DALEKKLAALEGG--EAALAFSSGM--AAISTVLLALLKA-------GDHVVASDDLYG--GTYRLFERLLPKLGIEVTF 109 (369)
T ss_pred HHHHHHHHHHHCC--CCEEEEcCHH--HHHHHHHHHHcCC-------CCEEEECCCCcc--hHHHHHHHHHhhcCeEEEE
Confidence 3344444444332 3468889996 4444333333321 122322221121 1123344566677877665
Q ss_pred EEeChhhHHHHHHHHHH------hhccCCcccccchHHHHHHHHHHHhCCCcEEEEcC
Q 012824 177 FHFTVQEGIDALEEVIY------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (456)
Q Consensus 177 ~~~~~~~~~~~l~~~i~------~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~ 228 (456)
+..+. .+.+.+.+. .+|.+..++.. ..++-.+++.+++.|+.+++.+-
T Consensus 110 v~~~d---~~~l~~~i~~~~~~v~~e~~~np~g~-~~dl~~i~~la~~~g~~livD~t 163 (369)
T cd00614 110 VDPDD---PEALEAAIKPETKLVYVESPTNPTLK-VVDIEAIAELAHEHGALLVVDNT 163 (369)
T ss_pred eCCCC---HHHHHHhcCCCCeEEEEECCCCCCCe-ecCHHHHHHHHHHcCCEEEEECC
Confidence 55432 223333221 13544433321 12334577888888998888664
No 154
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=28.13 E-value=1.9e+02 Score=26.86 Aligned_cols=26 Identities=23% Similarity=0.048 Sum_probs=14.4
Q ss_pred HHHHHHHHHhh---hcCCCeEEeccCccc
Q 012824 97 KAFEKAVVKRL---MTDVPFGVLLSGGLD 122 (456)
Q Consensus 97 ~~L~~AV~~rl---~sd~~vgv~LSGGlD 122 (456)
+.+..||++-- .++..+.++||=|-+
T Consensus 95 dAi~~av~rl~~~~~a~~kvvILLTDG~n 123 (191)
T cd01455 95 EATEFAIKELAAKEDFDEAIVIVLSDANL 123 (191)
T ss_pred HHHHHHHHHHHhcCcCCCcEEEEEeCCCc
Confidence 55555665421 124557777776665
No 155
>PRK05967 cystathionine beta-lyase; Provisional
Probab=27.07 E-value=3.2e+02 Score=28.31 Aligned_cols=102 Identities=13% Similarity=0.168 Sum_probs=55.2
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHHH
Q 012824 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEV 191 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~ 191 (456)
+-++++|.|. +.+.+++...... |..|....-.+. .-......+++.+|++...+..+.. +.+.+.
T Consensus 80 ~~~v~~sSG~--aAi~~~l~all~~-------GD~Vlv~~~~Y~--~~~~l~~~~l~~~Gi~v~~vd~~~~---e~l~~a 145 (395)
T PRK05967 80 AGTILVPSGL--AAVTVPFLGFLSP-------GDHALIVDSVYY--PTRHFCDTMLKRLGVEVEYYDPEIG---AGIAKL 145 (395)
T ss_pred CCEEEECcHH--HHHHHHHHHhcCC-------CCEEEEccCCcH--HHHHHHHHHHHhcCeEEEEeCCCCH---HHHHHh
Confidence 3467888885 4444444334432 233333322222 2344566788889998776654422 223333
Q ss_pred HH------hhccCCcccccchHHHHHHHHHHHhCCCcEEEEcC
Q 012824 192 IY------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (456)
Q Consensus 192 i~------~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~ 228 (456)
+. .+|+|..++.. ....-.+++.+++.|+-++...-
T Consensus 146 l~~~TklV~lesPsNP~l~-v~dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 146 MRPNTKVVHTEAPGSNTFE-MQDIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred cCcCceEEEEECCCCCCCc-HHHHHHHHHHHHHhCCEEEEECC
Confidence 21 24666554332 23455688888998987777544
No 156
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=26.56 E-value=3.7e+02 Score=27.61 Aligned_cols=118 Identities=19% Similarity=0.133 Sum_probs=55.0
Q ss_pred HHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEE
Q 012824 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (456)
Q Consensus 99 L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~ 178 (456)
|++.+.+.... +.++.+++|.. .+..++....+. +..+.+-...+. .-....+.++...|.....+.
T Consensus 64 le~~lA~l~g~--~~av~~~sG~~--Ai~~~l~al~~~-------Gd~Vi~~~~~y~--~t~~~~~~~~~~~G~~~~~vd 130 (391)
T TIGR01328 64 LEGRIAFLEGT--EAAVATSSGMG--AIAATLLTILKA-------GDHLISDECLYG--CTFALLEHALTKFGIQVDFIN 130 (391)
T ss_pred HHHHHHHHhCC--CcEEEECCHHH--HHHHHHHHHhCC-------CCEEEEecCcch--HHHHHHHHHHhcCCeEEEEEC
Confidence 34444444333 34789999974 333333323321 122322111111 112334556677887766665
Q ss_pred eC-hhhHHHHHHHH--HHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCch
Q 012824 179 FT-VQEGIDALEEV--IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (456)
Q Consensus 179 ~~-~~~~~~~l~~~--i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~Gg 230 (456)
++ .+++.+.+.+- +-.+|++..++.. ...+-.+.+.+++.|+.+++.+--+
T Consensus 131 ~~d~e~l~~~i~~~tklV~le~p~Np~G~-v~dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 131 MAIPEEVKAHIKDNTKIVYFETPANPTMK-LIDMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred CCCHHHHHHhhccCCeEEEEECCCCCCCc-ccCHHHHHHHHHHcCCEEEEECCCc
Confidence 53 22222222110 1113555444321 1223356777888898888865544
No 157
>PRK12342 hypothetical protein; Provisional
Probab=26.22 E-value=1.5e+02 Score=28.77 Aligned_cols=56 Identities=13% Similarity=-0.054 Sum_probs=27.3
Q ss_pred EEecc----CcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCce
Q 012824 114 GVLLS----GGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHH 175 (456)
Q Consensus 114 gv~LS----GGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~ 175 (456)
++++| +|.|+...+..++...++. +..+.-+.-...+.+.....-.+|+.||.++-
T Consensus 81 avli~d~~~~g~D~~ata~~La~~i~~~------~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~v 140 (254)
T PRK12342 81 LYLVQDAQLEHALPLDTAKALAAAIEKI------GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVI 140 (254)
T ss_pred EEEEecCccCCCCHHHHHHHHHHHHHHh------CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcE
Confidence 56666 5667766666666554321 11121111111122234556677777777754
No 158
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=25.65 E-value=3.8e+02 Score=27.41 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceE
Q 012824 97 KAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHE 176 (456)
Q Consensus 97 ~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~ 176 (456)
+.|++.+.+.... +-++.+++|.. .+.+++. ..+. +..|.+-...+. .=....+.+++..|.+...
T Consensus 50 ~~le~~la~l~g~--~~~l~~~sG~~--al~~~l~-ll~~-------Gd~Vl~~~~~y~--~~~~~~~~~~~~~G~~v~~ 115 (378)
T TIGR01329 50 TALESLLAKLDKA--DRAFAFSSGMA--ALDVITR-LLNN-------GDEIIAGDDLYG--GTDRLLTQVVPRSGVVVVH 115 (378)
T ss_pred HHHHHHHHHHhCC--CcEEEECCHHH--HHHHHHH-HhCC-------CCEEEEcCCCch--HHHHHHHHHHHHcCcEEEE
Confidence 3444444544333 45788889863 4444443 4432 122322221121 1123345667788988777
Q ss_pred EEeC-hhhHHHHHHHHH--HhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcC
Q 012824 177 FHFT-VQEGIDALEEVI--YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (456)
Q Consensus 177 ~~~~-~~~~~~~l~~~i--~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~ 228 (456)
+... .+++.+.+.+-. -.+|.+..++.. ...+-.+++.+++.|+.+++.+-
T Consensus 116 vd~~d~~~le~~i~~~tklv~le~psnptg~-v~dl~~I~~la~~~g~~vivD~a 169 (378)
T TIGR01329 116 VDTTDLDKVKAALGPKTKLVLLESPTNPLQK-IVDIRKISEMAHAQNALVVVDNT 169 (378)
T ss_pred eCCCCHHHHHHhcCcCceEEEEECCCCCCCe-eecHHHHHHHHHHcCCEEEEECC
Confidence 6653 233222221100 113444433321 12344577888888988887653
No 159
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=25.56 E-value=2.9e+02 Score=28.69 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEE
Q 012824 98 AFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEF 177 (456)
Q Consensus 98 ~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~ 177 (456)
.|++.+..... .+-++.+|+|. ..|..++...... +..|...+-.+. .-....+.+++..|.+...+
T Consensus 64 ~Le~~lA~l~g--~~~~v~~~sG~--~Ai~~~l~all~p-------GD~Vvv~~p~Y~--~t~~~~~~~~~~~g~~v~~v 130 (405)
T PRK08776 64 LLGEALAELEG--GAGGVITATGM--GAINLVLNALLQP-------GDTLVVPHDAYG--GSWRLFNALAKKGHFALITA 130 (405)
T ss_pred HHHHHHHHHhC--CCceEEEcCHH--HHHHHHHHHHhCC-------CCEEEEccCCch--HHHHHHHHHHHhcCcEEEEE
Confidence 34444454333 24578899994 4444444333322 123333222221 11223445566677766555
Q ss_pred EeC-hhhHHHHHHH---HHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCc
Q 012824 178 HFT-VQEGIDALEE---VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 229 (456)
Q Consensus 178 ~~~-~~~~~~~l~~---~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~G 229 (456)
... .+++.+.+.+ ++ .++.|.+++... ..+-.+.+.+++.|+.++...--
T Consensus 131 ~~~d~~~l~~~i~~~tklV-~l~~P~NPtG~v-~dl~~I~~la~~~gi~vIvD~a~ 184 (405)
T PRK08776 131 DLTDPRSLADALAQSPKLV-LIETPSNPLLRI-TDLRFVIEAAHKVGALTVVDNTF 184 (405)
T ss_pred CCCCHHHHHHhcCcCCeEE-EEECCCCCCCcc-CCHHHHHHHHHHcCCEEEEECCC
Confidence 432 2232222211 11 235555444321 23345677788888877775553
No 160
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=24.61 E-value=1.6e+02 Score=27.51 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCcEEEEcCchh---hhccCCc
Q 012824 209 MFLMSRKIKSLGVKMVISGEGSD---EIFGGYL 238 (456)
Q Consensus 209 ~~~l~~~a~~~g~~vvLsG~GgD---ElfgGy~ 238 (456)
.+.+.+.+...|+.|++.|---| |+|.|-.
T Consensus 99 v~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~ 131 (201)
T COG1435 99 VYVLNELADRLGIPVICYGLDTDFRGEPFEGSK 131 (201)
T ss_pred HHHHHHHHhhcCCEEEEeccccccccCCCccHH
Confidence 45677777666999999998877 5555543
No 161
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=24.15 E-value=3.3e+02 Score=24.66 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhh--c--CCCeEEeccCcccHH--HHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHH
Q 012824 94 VLRKAFEKAVVKRLM--T--DVPFGVLLSGGLDSS--LVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVA 167 (456)
Q Consensus 94 ~lr~~L~~AV~~rl~--s--d~~vgv~LSGGlDSs--~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA 167 (456)
.+.+.|..|.+.--. . ...+.+++|+|-|+. -+..++.+ .++ ..|.-+++++. .|...-+++|
T Consensus 87 ~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~~~~-l~~--------~~I~v~~IgiG--~~~~~L~~ia 155 (183)
T cd01453 87 SLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYETIDK-LKK--------ENIRVSVIGLS--AEMHICKEIC 155 (183)
T ss_pred hHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHHHHH-HHH--------cCcEEEEEEec--hHHHHHHHHH
Confidence 566666666553211 1 234778889887652 23233332 221 24566666663 4566788899
Q ss_pred HHhCCCceEE
Q 012824 168 DYLGTRHHEF 177 (456)
Q Consensus 168 ~~lg~~h~~~ 177 (456)
+..|-.+...
T Consensus 156 ~~tgG~~~~~ 165 (183)
T cd01453 156 KATNGTYKVI 165 (183)
T ss_pred HHhCCeeEee
Confidence 9988776544
No 162
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=23.99 E-value=5.7e+02 Score=25.07 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhhcCCC-eEE-eccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhC
Q 012824 94 VLRKAFEKAVVKRLMTDVP-FGV-LLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLG 171 (456)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~~-vgv-~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg 171 (456)
.+.+.+++.+.+.+..+.. +.+ +.+|| |..+.+++....... ..+...+-+.- .. . ...+|+.+|
T Consensus 31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~g--t~~l~~~~~~~~~~~-------~~vi~~~~~~~--~~-~-~~~~a~~~g 97 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNHTCVLLQGSG--TFAVEATIGSLVPRD-------GKLLVLINGAY--GE-R-LAKICEYLG 97 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCc--HHHHHHHHHhccCCC-------CeEEEECCCch--hh-H-HHHHHHHcC
Confidence 4555566666666654432 334 56677 444444444433211 12222221110 11 1 246778899
Q ss_pred CCceEEEeChhhH--HHHHHHHHHhhcc--------CCcccccchHHHHHHHHHHHhCCCcEEEEc
Q 012824 172 TRHHEFHFTVQEG--IDALEEVIYHIET--------YDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (456)
Q Consensus 172 ~~h~~~~~~~~~~--~~~l~~~i~~~e~--------~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG 227 (456)
.+...+.++.... .+.+.+.+..... +..++ -...+.-.+.+.+++.|+-+++.+
T Consensus 98 ~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~-G~~~~~~~i~~l~~~~~~~livD~ 162 (355)
T TIGR03301 98 IPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTT-GILNPLEAIAKVARSHGAVLIVDA 162 (355)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcc-cchhHHHHHHHHHHHcCCEEEEEe
Confidence 9988877643211 2344444321000 00000 011344457778888888888864
No 163
>PRK08114 cystathionine beta-lyase; Provisional
Probab=23.19 E-value=2.9e+02 Score=28.65 Aligned_cols=105 Identities=12% Similarity=0.146 Sum_probs=53.9
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeC-hhhHHHHHH
Q 012824 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFT-VQEGIDALE 189 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~-~~~~~~~l~ 189 (456)
..-++++|.|.-... +++....+. +..|.+-...+. .-....+.+++.+|++.+.+... .+++.+.+.
T Consensus 77 ~~~a~~~~SGmaAi~--~~~~~ll~~-------GD~Vv~~~~~Yg--~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~ 145 (395)
T PRK08114 77 GAGCALYPCGAAAVA--NAILAFVEQ-------GDHVLMTGTAYE--PTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQ 145 (395)
T ss_pred CCeEEEEhHHHHHHH--HHHHHHcCC-------CCEEEEeCCCcH--HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcC
Confidence 456888888885443 222223322 123332211221 22345667788889987776543 233333332
Q ss_pred H---HHHhhccCCcccccchHHHHHHHHHHHhCC--CcEEEEcC
Q 012824 190 E---VIYHIETYDVTTIRASTPMFLMSRKIKSLG--VKMVISGE 228 (456)
Q Consensus 190 ~---~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g--~~vvLsG~ 228 (456)
+ ++ .+|++..++.. ..+.-.+++.+++.| +.+++.+-
T Consensus 146 ~~TrlV-~~EtpsNp~~~-v~DI~~Ia~ia~~~g~g~~lvVDnT 187 (395)
T PRK08114 146 PNTKVV-FLESPGSITME-VHDVPAIVAAVRSVNPDAVIMIDNT 187 (395)
T ss_pred CCceEE-EEECCCCCCCE-eecHHHHHHHHHHhCCCCEEEEECC
Confidence 1 11 24666544322 123446788888864 77877654
No 164
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=23.13 E-value=2.3e+02 Score=26.07 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=35.5
Q ss_pred eeccCCCCchHHHHHHHHHHhC---CCceEEEe----ChhhHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCc
Q 012824 150 FCIGLEGSPDLKAAREVADYLG---TRHHEFHF----TVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVK 222 (456)
Q Consensus 150 fsig~~~~~e~~~A~~vA~~lg---~~h~~~~~----~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~ 222 (456)
|-.||..++...-|+.+.+++. ........ .+++.++.+.+++..........+-+|..-|.....+...|++
T Consensus 4 YlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~ 83 (187)
T PF05728_consen 4 YLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLP 83 (187)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCC
Confidence 4456766666666666666553 22222221 2333444444444432211122344555555544555555655
Q ss_pred EEE
Q 012824 223 MVI 225 (456)
Q Consensus 223 vvL 225 (456)
.||
T Consensus 84 avL 86 (187)
T PF05728_consen 84 AVL 86 (187)
T ss_pred EEE
Confidence 443
No 165
>PRK07582 cystathionine gamma-lyase; Validated
Probab=22.83 E-value=2e+02 Score=29.29 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=52.5
Q ss_pred eEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHH--
Q 012824 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE-- 190 (456)
Q Consensus 113 vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~-- 190 (456)
-.+.+++|.+ .+.+++....+. +..|.+..-++. .-..+++...+.+|++...+..+.+. ....++
T Consensus 67 ~~v~~~sG~~--Ai~~~l~all~~-------Gd~Vl~~~~~y~--~~~~~~~~~l~~~G~~v~~v~~~~~~-~~~~~~t~ 134 (366)
T PRK07582 67 EALVFPSGMA--AITAVLRALLRP-------GDTVVVPADGYY--QVRALAREYLAPLGVTVREAPTAGMA-EAALAGAD 134 (366)
T ss_pred CEEEECCHHH--HHHHHHHHhcCC-------CCEEEEeCCCcH--hHHHHHHHHHhcCeEEEEEECCCChH-HHhccCce
Confidence 4678889974 333333333322 123333322221 22345566667788877766654321 111121
Q ss_pred HHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcC
Q 012824 191 VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (456)
Q Consensus 191 ~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~ 228 (456)
++ .+|+|..++.. ....-.+++.+++.|+.+++.+-
T Consensus 135 lV-~le~p~NPtg~-v~di~~I~~~a~~~g~~lvVD~t 170 (366)
T PRK07582 135 LV-LAETPSNPGLD-VCDLAALAAAAHAAGALLVVDNT 170 (366)
T ss_pred EE-EEECCCCCCCC-ccCHHHHHHHHHHcCCEEEEECC
Confidence 12 24666655432 12344567778888888888763
No 166
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=22.62 E-value=4.3e+02 Score=25.72 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=42.3
Q ss_pred CCCeEEeccCcccHHH---HHHHHHHHhchhhhhhhcCCcccceeccCCCC-------------chHHHHHHHHHHhCCC
Q 012824 110 DVPFGVLLSGGLDSSL---VAAVASRYLADSEAACQWGSQLHSFCIGLEGS-------------PDLKAAREVADYLGTR 173 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~---Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~-------------~e~~~A~~vA~~lg~~ 173 (456)
..++-++||.|.|+.. +..++....+ ..+..|++++.+. .+...-+++|+..|-.
T Consensus 164 ~rk~iIllTDG~~~~~~~~~~~~~~~~~~---------~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~ 234 (296)
T TIGR03436 164 GRKALIVISDGGDNRSRDTLERAIDAAQR---------ADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGR 234 (296)
T ss_pred CCeEEEEEecCCCcchHHHHHHHHHHHHH---------cCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCe
Confidence 3567899999999753 2222222211 3577777776421 2345678888888766
Q ss_pred ceEEEeChhhHHHHHHHHHH
Q 012824 174 HHEFHFTVQEGIDALEEVIY 193 (456)
Q Consensus 174 h~~~~~~~~~~~~~l~~~i~ 193 (456)
.... +.+++.+.+.++..
T Consensus 235 ~~~~--~~~~l~~~f~~i~~ 252 (296)
T TIGR03436 235 AFYV--NSNDLDGAFAQIAE 252 (296)
T ss_pred Eecc--cCccHHHHHHHHHH
Confidence 4322 45555555555443
No 167
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=22.53 E-value=76 Score=32.63 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=40.2
Q ss_pred cceeEEEEEEE-CCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCe
Q 012824 2 LDGMFSFVLLD-TRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGG 71 (456)
Q Consensus 2 L~G~Fa~~i~D-~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~ 71 (456)
|+|.||++.-. .........+|+.+.+|.+-+.. +..|.++||+.|+++.+ -|.|+.++..+++.
T Consensus 297 m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrn----gLrp~Ry~~t~d~~ 362 (371)
T COG0067 297 LLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRN----GLRPARYWITKDGE 362 (371)
T ss_pred hcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccC----CCCcceEEEecCCE
Confidence 56666665431 22345666778888888777654 56677777777777543 36666666554443
No 168
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=22.39 E-value=6.3e+02 Score=23.39 Aligned_cols=25 Identities=8% Similarity=0.193 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCc-EEEEcCchhhh
Q 012824 209 MFLMSRKIKSLGVK-MVISGEGSDEI 233 (456)
Q Consensus 209 ~~~l~~~a~~~g~~-vvLsG~GgDEl 233 (456)
+..+.+.|++.|++ +.+||..+..+
T Consensus 125 v~~a~~~Ak~~G~~vI~IT~~~~s~l 150 (196)
T PRK10886 125 IVKAVEAAVTRDMTIVALTGYDGGEL 150 (196)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 34467788999987 55688876654
No 169
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=22.37 E-value=2.2e+02 Score=33.07 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHhCCCceE---EEeChhhHHHHHH-HHHHhhccCCcccccch-HHHHHHHHHHHhCCCcEEEEcCchhh
Q 012824 158 PDLKAAREVADYLGTRHHE---FHFTVQEGIDALE-EVIYHIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 158 ~e~~~A~~vA~~lg~~h~~---~~~~~~~~~~~l~-~~i~~~e~~~~~~i~~~-~~~~~l~~~a~~~g~~vvLsG~GgDE 232 (456)
|-..-|+.+|+.+|+.... +.++..++....+ ++...++..+ -..|.+ ..-..+-+..++.|..|.+||||...
T Consensus 572 D~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~-VfARvsP~qK~~IV~~lq~~g~vVamtGDGvND 650 (917)
T COG0474 572 DHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELS-VFARVSPEQKARIVEALQKSGHVVAMTGDGVND 650 (917)
T ss_pred CCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCc-EEEEcCHHHHHHHHHHHHhCCCEEEEeCCCchh
Confidence 4456799999999976653 3455555422212 1222233333 123333 22345677788889999999999877
Q ss_pred h
Q 012824 233 I 233 (456)
Q Consensus 233 l 233 (456)
.
T Consensus 651 a 651 (917)
T COG0474 651 A 651 (917)
T ss_pred H
Confidence 5
No 170
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=22.22 E-value=3.9e+02 Score=28.13 Aligned_cols=96 Identities=21% Similarity=0.259 Sum_probs=53.7
Q ss_pred cHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCc-
Q 012824 122 DSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDV- 200 (456)
Q Consensus 122 DSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~- 200 (456)
=|++++-++++... .. ...-+.=++| ..-.+.-|++||+.+..+.+-.+--++.+...+.. +.|+.
T Consensus 106 KSTLLLQva~~lA~---------~~-~vLYVsGEES--~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~-~~p~lv 172 (456)
T COG1066 106 KSTLLLQVAARLAK---------RG-KVLYVSGEES--LQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQ-EKPDLV 172 (456)
T ss_pred HHHHHHHHHHHHHh---------cC-cEEEEeCCcC--HHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHh-cCCCEE
Confidence 47777777777653 12 2332221222 34567778999988777776655433333332221 12221
Q ss_pred -------------ccccchHH-----HHHHHHHHHhCCCcEEEEcCch
Q 012824 201 -------------TTIRASTP-----MFLMSRKIKSLGVKMVISGEGS 230 (456)
Q Consensus 201 -------------~~i~~~~~-----~~~l~~~a~~~g~~vvLsG~Gg 230 (456)
.+...++. ...+.+.||+.|+.+++.|+=-
T Consensus 173 VIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVT 220 (456)
T COG1066 173 VIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVT 220 (456)
T ss_pred EEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEc
Confidence 11112221 3457889999999999998753
No 171
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=22.21 E-value=2.6e+02 Score=25.05 Aligned_cols=29 Identities=31% Similarity=0.579 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCcEEEEcCchhhhccCC
Q 012824 209 MFLMSRKIKSLGVKMVISGEGSDEIFGGY 237 (456)
Q Consensus 209 ~~~l~~~a~~~g~~vvLsG~GgDElfgGy 237 (456)
++..++.+++.|++|++.|-||-.-+-|.
T Consensus 46 m~~ya~~a~~~g~~viIAgAGgAAHLPGm 74 (162)
T COG0041 46 MFEYAEEAEERGVKVIIAGAGGAAHLPGM 74 (162)
T ss_pred HHHHHHHHHHCCCeEEEecCcchhhcchh
Confidence 44556778889999999999987655554
No 172
>PRK08064 cystathionine beta-lyase; Provisional
Probab=22.08 E-value=4.3e+02 Score=27.12 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=50.4
Q ss_pred EEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHHHHH
Q 012824 114 GVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIY 193 (456)
Q Consensus 114 gv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~ 193 (456)
++.+|-|.. +|.+.+. ..+. +..|..-...+. .-......+++..|.+.+.+.++. ++.+.+.+.
T Consensus 72 ~v~~~sG~~--ai~~~l~-~l~~-------Gd~Vlv~~~~y~--~~~~~~~~~~~~~G~~v~~v~~~d---~~~l~~~l~ 136 (390)
T PRK08064 72 GFAFASGMA--AISTAFL-LLSK-------GDHVLISEDVYG--GTYRMITEVLSRFGIEHTFVDMTN---LEEVAQNIK 136 (390)
T ss_pred eEEECCHHH--HHHHHHH-HhCC-------CCEEEEccCccc--hHHHHHHHHHHHcCCEEEEECCCC---HHHHHHhcC
Confidence 677888865 3433332 3322 123332222222 123344566777898877776531 222332221
Q ss_pred ------hhccCCcccccchHHHHHHHHHHHhCCCcEEEEcC
Q 012824 194 ------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (456)
Q Consensus 194 ------~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~ 228 (456)
.++.|..++.. ....-.+.+.+++.|+.+++.+-
T Consensus 137 ~~tklV~l~~p~NptG~-~~dl~~I~~la~~~g~~vvvD~a 176 (390)
T PRK08064 137 PNTKLFYVETPSNPLLK-VTDIRGVVKLAKAIGCLTFVDNT 176 (390)
T ss_pred CCceEEEEECCCCCCcE-eccHHHHHHHHHHcCCEEEEECC
Confidence 13555544322 12344567778888888888654
No 173
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=21.94 E-value=2.5e+02 Score=27.30 Aligned_cols=63 Identities=11% Similarity=-0.078 Sum_probs=33.6
Q ss_pred hhcCCCeEEecc----CcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEE
Q 012824 107 LMTDVPFGVLLS----GGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEF 177 (456)
Q Consensus 107 l~sd~~vgv~LS----GGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~ 177 (456)
|..|. ++.+| +|.|+...+..++...++. +.++.-+.-...+.+-....-.+|++||+++-..
T Consensus 79 mGaD~--avli~d~~~~g~D~~~tA~~La~ai~~~------~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~ 145 (256)
T PRK03359 79 RGPDE--LIVVIDDQFEQALPQQTASALAAAAQKA------GFDLILCGDGSSDLYAQQVGLLVGEILNIPAING 145 (256)
T ss_pred cCCCE--EEEEecCcccCcCHHHHHHHHHHHHHHh------CCCEEEEcCccccCCCCcHHHHHHHHhCCCceee
Confidence 34444 56665 5678888887777766431 1122111111112223355667888888886543
No 174
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.17 E-value=3e+02 Score=28.78 Aligned_cols=115 Identities=12% Similarity=0.067 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEE
Q 012824 98 AFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEF 177 (456)
Q Consensus 98 ~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~ 177 (456)
.|++.+..... .+-++..|+|..... +++.. .... +..|......+.+ -......+++..|++...+
T Consensus 68 ~Le~~lA~leg--~~~al~~~sG~~Ai~-~al~~-ll~~-------GD~Vlv~~~~y~~--t~~~~~~~~~~~Gv~v~~v 134 (431)
T PRK08248 68 VFEKRIAALEG--GIGALAVSSGQAAIT-YSILN-IASA-------GDEIVSSSSLYGG--TYNLFAHTLPKLGITVKFV 134 (431)
T ss_pred HHHHHHHHHhC--CCcEEEECCHHHHHH-HHHHH-HhCC-------CCEEEEccCchhh--HHHHHHHHHHhCCEEEEEE
Confidence 34555554432 456899999983332 23322 2321 1233322222221 1234456677889876666
Q ss_pred EeC-hhhHHHHHHH---HHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEc
Q 012824 178 HFT-VQEGIDALEE---VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (456)
Q Consensus 178 ~~~-~~~~~~~l~~---~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG 227 (456)
... .+++.+.+.+ ++ .++.+..++.. ....-.+++.+++.|+.++..+
T Consensus 135 d~~d~e~l~~ai~~~tklV-~l~sp~NPtG~-v~di~~I~~la~~~gi~vIvD~ 186 (431)
T PRK08248 135 DPSDPENFEAAITDKTKAL-FAETIGNPKGD-VLDIEAVAAIAHEHGIPLIVDN 186 (431)
T ss_pred CCCCHHHHHHhcCCCCeEE-EEECCCCCCCc-ccCHHHHHHHHHHcCCEEEEeC
Confidence 543 2222222211 11 13444433321 1123356777888888777654
No 175
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=20.60 E-value=6.6e+02 Score=23.00 Aligned_cols=90 Identities=16% Similarity=0.078 Sum_probs=50.4
Q ss_pred cccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCch------HHHHHHHHHHhCCCceEEEeChhhHHHHHHHHHH
Q 012824 120 GLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPD------LKAAREVADYLGTRHHEFHFTVQEGIDALEEVIY 193 (456)
Q Consensus 120 GlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e------~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~ 193 (456)
|-||+.+.-.+.... .++..|-.+..=.+. ....+++|+.+|++..+-..+++++++. +.
T Consensus 8 aPCs~~~~~~L~~~g----------~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~----v~ 73 (176)
T PF02677_consen 8 APCSTYPLERLREEG----------FDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRA----VK 73 (176)
T ss_pred ccccHHHHHHHHHCC----------CCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHH----Hh
Confidence 678888877776542 355555444221232 3456788999999887766666665543 33
Q ss_pred hhccCCcccccchHH----HHHHHHHHHhCCCcE
Q 012824 194 HIETYDVTTIRASTP----MFLMSRKIKSLGVKM 223 (456)
Q Consensus 194 ~~e~~~~~~i~~~~~----~~~l~~~a~~~g~~v 223 (456)
.+|.-.....|+..- +-..++.|++.|.+.
T Consensus 74 ~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~ 107 (176)
T PF02677_consen 74 GLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDY 107 (176)
T ss_pred hCccCCccCchhHHHHHHHHHHHHHHHHHcCCCE
Confidence 343221122344322 223566777776543
No 176
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=20.45 E-value=1.7e+02 Score=34.89 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=36.6
Q ss_pred CEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCcc---EEeCCCcEEEec
Q 012824 16 KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERF---ISFPPGHIYSSK 68 (456)
Q Consensus 16 ~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I---~~lpPG~~~~~~ 68 (456)
+.+=..=||=|.||.-|+.+.++.++.|||.-.+--..+.| -+|-||..+.++
T Consensus 422 ry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD 477 (2142)
T KOG0399|consen 422 RYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVD 477 (2142)
T ss_pred ceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEE
Confidence 45556668889999977677789999999976542211112 268899987553
No 177
>PRK06767 methionine gamma-lyase; Provisional
Probab=20.43 E-value=4.7e+02 Score=26.72 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCceEEEeC-hhhHHHHHHHH--HHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCc
Q 012824 161 KAAREVADYLGTRHHEFHFT-VQEGIDALEEV--IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 229 (456)
Q Consensus 161 ~~A~~vA~~lg~~h~~~~~~-~~~~~~~l~~~--i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~G 229 (456)
...+..++..|++...+... .+++.+.+.+- +-.+|++..++.. ....-.+.+.+++.|+.+++.+--
T Consensus 115 ~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~lesp~NptG~-v~dl~~I~~la~~~g~~vivD~a~ 185 (386)
T PRK06767 115 GFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTMK-LIDLKQVIRVAKRNGLLVIVDNTF 185 (386)
T ss_pred HHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEeCCCCCCce-ecCHHHHHHHHHHcCCEEEEECCC
Confidence 44555566677765444322 23333222210 0123555544322 123345677788888888886554
No 178
>PLN02360 probable 6-phosphogluconolactonase
Probab=20.33 E-value=88 Score=30.51 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=21.7
Q ss_pred CCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcc
Q 012824 89 PYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGL 121 (456)
Q Consensus 89 ~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGl 121 (456)
++..+.+.+.+.+.++..+.....+++.||||-
T Consensus 20 ~el~~~~a~~i~~~~~~a~~~~~~~~lalsGGS 52 (268)
T PLN02360 20 DELSTDLAEYIAELSEASVKERGVFAIALSGGS 52 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCC
Confidence 333445555565555555555678999999994
Done!