BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012827
(455 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RWE8|GGAP1_ARATH GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2
PE=1 SV=1
Length = 442
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/458 (71%), Positives = 374/458 (81%), Gaps = 20/458 (4%)
Query: 2 MLRIKRVPTVVSNYQKEETEEAAAAARRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFKT 61
ML+IKRVPTVVSNYQK++ E GCGRNCL CC+ GA+LPLYA K + K
Sbjct: 1 MLKIKRVPTVVSNYQKDDGAEDPV------GCGRNCLGACCLNGARLPLYACKNLVK-SG 53
Query: 62 EMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNE 121
E V HE EP PVAFL+SLVLGEWEDR QRGLFRYDVTACET+VIPG+YGF+AQLNE
Sbjct: 54 EKLVISHEAIEP--PVAFLESLVLGEWEDRFQRGLFRYDVTACETKVIPGKYGFVAQLNE 111
Query: 122 GRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENS 181
GRHLKKRPTEFRVDKVLQ FDG+KFNFTKVGQEE+LFQFEA ED +VQF P PID ENS
Sbjct: 112 GRHLKKRPTEFRVDKVLQSFDGSKFNFTKVGQEELLFQFEAGEDAQVQFFPCMPIDPENS 171
Query: 182 PSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAF 241
PSVVAINVSPIEYGHVLLIPRVL+CLPQRID S LLA++MAAEA NPYFRLGYNSLGAF
Sbjct: 172 PSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHKSLLLAVHMAAEAANPYFRLGYNSLGAF 231
Query: 242 ATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSN 301
ATINHLHFQAYY+A+PFP+EKAPTKKI +T SGVKISELL+YPVR L+FEGG+S+++LS+
Sbjct: 232 ATINHLHFQAYYLAMPFPLEKAPTKKITTTVSGVKISELLSYPVRSLLFEGGSSMQELSD 291
Query: 302 TVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEIS 361
TVSD C+CLQ NNIP+N+LI+DCG++IFL+PQCYAEKQALGEVS E+L+TQVNPAVWEIS
Sbjct: 292 TVSDCCVCLQNNNIPFNILISDCGRQIFLMPQCYAEKQALGEVSPEVLETQVNPAVWEIS 351
Query: 362 GHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIA---RGDDANGGVAES 418
GHMVLKRK+DYE ASE+NAWRLLAE SLSEER++EV AL FEAI + +D G +
Sbjct: 352 GHMVLKRKEDYEGASEDNAWRLLAEASLSEERFKEVTALAFEAIGCSNQEEDLEGTIVHQ 411
Query: 419 VIGEADAKPKSGGEVDAINKNSCPAMVSGT-PECLVLQ 455
+ KS N+ + +GT ECLVLQ
Sbjct: 412 QNSSGNVNQKS-------NRTHGGPITNGTAAECLVLQ 442
>sp|Q9FLP9|GGAP2_ARATH GDP-L-galactose phosphorylase 2 OS=Arabidopsis thaliana GN=VTC5
PE=1 SV=1
Length = 431
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/409 (76%), Positives = 351/409 (85%), Gaps = 19/409 (4%)
Query: 1 MMLRIKRVPTVVSNYQKEETEEAAAAARRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFK 60
M+L+IKRVPTVVSNYQK+ET E GCGRNCL+KCCI GA+LPLY K ++K
Sbjct: 1 MLLKIKRVPTVVSNYQKDETVEEG-------GCGRNCLSKCCINGARLPLYTCKNLDKSV 53
Query: 61 TEMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLN 120
E E PV FL+SLV+GEWEDR QRGLFRYDVTACET+VIPG+YGFIAQLN
Sbjct: 54 GE---------NTESPVTFLESLVIGEWEDRFQRGLFRYDVTACETKVIPGKYGFIAQLN 104
Query: 121 EGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEAS---EDGEVQFHPSAPID 177
EGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEE+LFQF+AS +D E+QF S P+D
Sbjct: 105 EGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEELLFQFKASTNDDDSEIQFLASMPLD 164
Query: 178 VENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNS 237
+NSPSVVAINVSPIEYGHVLLIPRVL+CLPQRID S LLAL MAAEA NPYFRLGYNS
Sbjct: 165 ADNSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHKSLLLALQMAAEADNPYFRLGYNS 224
Query: 238 LGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLE 297
LGAFATINHLHFQAYY+A+ FPIEKA + KI +T +GVKIS+LLNYPVRGL+ EGGN+++
Sbjct: 225 LGAFATINHLHFQAYYLAMQFPIEKASSLKITTTNNGVKISKLLNYPVRGLLVEGGNTIK 284
Query: 298 DLSNTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAV 357
DL++TVSDA +CLQ NNIP+N+LI+D GKRIFLLPQCYAEKQALGEVSS LLDTQVNPAV
Sbjct: 285 DLADTVSDASVCLQNNNIPFNILISDSGKRIFLLPQCYAEKQALGEVSSTLLDTQVNPAV 344
Query: 358 WEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIA 406
WE+SGHMVLKRK+DYE ASEE AWRLLAEVSLSEER++EVN +IF+AI
Sbjct: 345 WEMSGHMVLKRKEDYEGASEEKAWRLLAEVSLSEERFREVNTMIFDAIG 393
>sp|Q3TLS3|GDPP1_MOUSE GDP-D-glucose phosphorylase 1 OS=Mus musculus GN=Gdpgp1 PE=2 SV=2
Length = 386
Score = 171 bits (434), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 174/349 (49%), Gaps = 37/349 (10%)
Query: 76 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHL-KKRPTEFRV 134
P++ DS + W R++ GLFRY + +T+++PG GF+AQLN R + ++RP R
Sbjct: 55 PLSRFDSALRSAWRQRLELGLFRYRLEDLQTQILPGSVGFVAQLNIERGIQRRRPQNIR- 113
Query: 135 DKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEY 194
V Q FD +FNF K+ EVLF+ + G P+ P ++ +V INVSP+E+
Sbjct: 114 -SVRQEFDPEQFNFNKIRPGEVLFRMQREPKG-----PATPKQEDDV--LVVINVSPLEW 165
Query: 195 GHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYM 254
GHVLL+P + LPQR+ + L + +P FR+G+NSLG A++NHLH YY+
Sbjct: 166 GHVLLVPAPAQGLPQRLLPGVLRVGLEAVLLSLHPGFRVGFNSLGGLASVNHLHLHCYYL 225
Query: 255 ALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACIC---LQ 311
A P P+E AP+ + G I L P G +F DL +S C L
Sbjct: 226 AHPLPVEGAPSTPLDPKGC---IHLLQALPAPGFLFYTSGPGPDLEVLISRVCRATDYLS 282
Query: 312 ENNIPYNVLIAD-------------CGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVW 358
+ I +N+ + G R+ L +A K + G S N A+
Sbjct: 283 DREIAHNLFVTRGAPPGPTSSTSDLSGIRVIL----WARKSSFGIKES----GAFNVALC 334
Query: 359 EISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIAR 407
E++GH+ +K +D+ +E A L+ + L E + EV A + +A+
Sbjct: 335 ELAGHLPVKTSQDFSSLTEAAAVALIQDCLLPETQAGEVRAALVALMAQ 383
>sp|Q5E9T1|GDPP1_BOVIN GDP-D-glucose phosphorylase 1 OS=Bos taurus GN=GDPGP1 PE=2 SV=1
Length = 385
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 178/354 (50%), Gaps = 40/354 (11%)
Query: 75 PPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRV 134
PP++ DS + W R++ GLFRY + T+ +PG GF+AQLN R +++R + +
Sbjct: 54 PPLSHFDSALCSAWRQRMELGLFRYPLGELPTQTLPGTVGFVAQLNVERGVQRRCPQ-NI 112
Query: 135 DKVLQPFDGNKFNFTKVGQEEVLFQFEASED--GEVQFHPSAPIDVENSPSVVAINVSPI 192
V Q FD +FNF ++ EVLF+ +D G VQ D+ +V INVSP+
Sbjct: 113 KSVRQEFDPEQFNFNQIRPGEVLFRLHRKQDCSGTVQQE-----DI-----LVVINVSPL 162
Query: 193 EYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAY 252
E+GHVLL+P LPQR+ + + + +P FR+G+NSLG A++NHLH Y
Sbjct: 163 EWGHVLLVPEPARGLPQRLLPGALRAGVEAVLLSSHPGFRVGFNSLGGLASVNHLHLHGY 222
Query: 253 YMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF---EGGNSLEDLSNTVSDACIC 309
Y+A P+E AP++ + G ++ L P G +F G LE L + V A
Sbjct: 223 YLAHRLPVEGAPSEPLDPRG---RLHVLQALPAPGFLFYTSRPGPDLEALISRVCRATDY 279
Query: 310 LQENNIPYNVLI-------------ADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPA 356
L + I +N+ + A G R+ L P+ K + G E N A
Sbjct: 280 LTDCEIAHNLFVTRGAPPGKATSSSALSGVRVILWPR----KPSFGIKEGEAF----NVA 331
Query: 357 VWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGDD 410
+ E++GH+ +K +D+ +E A L+ E L + ++V A + IAR ++
Sbjct: 332 LCELAGHLPVKTAQDFSSLTEAAALALIRECLLPPAQAEDVRAALVALIAREEE 385
>sp|Q6ZNW5|GDPP1_HUMAN GDP-D-glucose phosphorylase 1 OS=Homo sapiens GN=GDPGP1 PE=1 SV=2
Length = 385
Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 176/348 (50%), Gaps = 36/348 (10%)
Query: 76 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVD 135
P + D+ + W+ RV+ GLFRY + +T+++PG GF+AQLN R +++RP + +
Sbjct: 55 PQSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRPPQ-TIK 113
Query: 136 KVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYG 195
V Q FD +FNF K+ EVLF+ P P + +V INVSP+E+G
Sbjct: 114 SVRQAFDPVQFNFNKIRPGEVLFRLHRE--------PDLPGTLLQEDILVVINVSPLEWG 165
Query: 196 HVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMA 255
HVLL+P LPQR+ + + + +P FR+G+NSLG A++NHLH YY+A
Sbjct: 166 HVLLVPEPARQLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLA 225
Query: 256 LPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEG---GNSLEDLSNTVSDACICLQE 312
P+E+AP++ + G + L + P G +F G LE L + V A L +
Sbjct: 226 HRLPVEQAPSEPLDPGG---HLHLLQDLPAPGFLFYTRGPGPDLESLISRVCRATDYLTD 282
Query: 313 NNIPYNVLI-------------ADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWE 359
+ I +N+ + A G R+ L +A K + G E N A+ E
Sbjct: 283 HEIAHNLFVTRGAPPGKTSPSSALTGVRVIL----WARKSSFGIKDGEAF----NVALCE 334
Query: 360 ISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIAR 407
++GH+ +K +D+ +E A L+ + L + ++V A + +++
Sbjct: 335 LAGHLPVKTSQDFSSLTEAAAVALIQDCRLPPSQAEDVQAALVALMSQ 382
>sp|Q8HXE4|GDPP1_MACFA GDP-D-glucose phosphorylase 1 OS=Macaca fascicularis GN=GDPGP1 PE=2
SV=1
Length = 385
Score = 162 bits (410), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/348 (30%), Positives = 172/348 (49%), Gaps = 36/348 (10%)
Query: 76 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVD 135
P + D+ + W+ RV+ GLFRY + +T+++PG GF+AQLN R +++R + +
Sbjct: 55 PQSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGVVGFVAQLNVERGVQRRRPQ-TIK 113
Query: 136 KVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYG 195
V Q FD +FNF K+ EVL++ P P + +V INVSP+E+G
Sbjct: 114 SVRQAFDPEQFNFNKIQPGEVLYRLHRE--------PDLPGTLLQEDILVVINVSPLEWG 165
Query: 196 HVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMA 255
HVLL+P LPQR+ + + + +P FR+G+NSLG A++NHLH YY+A
Sbjct: 166 HVLLVPEPARGLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLA 225
Query: 256 LPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEG---GNSLEDLSNTVSDACICLQE 312
P+E+AP++ + G + L P G +F G LE L V A L +
Sbjct: 226 HRLPVEQAPSEPLDPGG---HLHLLQGLPAPGFLFYTRGPGLDLESLICRVCRATDYLTD 282
Query: 313 NNIPYNVLI-------------ADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWE 359
+ I +N+ + A G R+ L +A K G E N A+ E
Sbjct: 283 HEIAHNLFVTRGAPPGKTSPSSALTGVRVIL----WARKSCFGIKDGEAF----NVALCE 334
Query: 360 ISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIAR 407
++GH+ +K +D+ +E A L+ + L + +EV A + +++
Sbjct: 335 LAGHLPVKTSQDFSSLTEAAAVALIQDCRLPPSQAEEVQAALVALMSQ 382
>sp|Q08CA1|GDPP1_DANRE GDP-D-glucose phosphorylase 1 OS=Danio rerio GN=gdpgp1 PE=2 SV=1
Length = 343
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 168/334 (50%), Gaps = 45/334 (13%)
Query: 88 WEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFN 147
W ++ GLFRY + ETR++PG G+IAQLN R ++R + + V Q FD +FN
Sbjct: 39 WTEKRNTGLFRYRLDELETRILPGSRGYIAQLNIMRGTERRKPQ-EILSVRQNFDPKQFN 97
Query: 148 FTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECL 207
F K+ +E+LF+ + + + V INVSP+E+GH LL+P +C
Sbjct: 98 FNKINPKELLFELKRESERKCS---------------VIINVSPLEFGHCLLVPEPEKCF 142
Query: 208 PQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKK 267
PQ + + + + +P FR+G+NSLG FA++NHLH YY+ IE +P K
Sbjct: 143 PQVLTHLAVQTGIETVLLSADPGFRVGFNSLGGFASVNHLHLHGYYLNHRLKIESSPAKL 202
Query: 268 IISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLIA-DC-- 324
++ + + EL+++P L + G +L+ + + L ++NI +N+ + C
Sbjct: 203 VLPN---LNLYELVDFPSGFLFYTQGPNLDLVVKAICSLTDVLVDHNIAHNLFLTRGCPP 259
Query: 325 -----------GKRIFLLPQ--CYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKD 371
G R+ + P+ C+ K+ ++ N A+ E++GH+ K ++D
Sbjct: 260 QMEPDTSSSRNGVRVIVWPRLSCFGAKE----------ESAFNVALCELAGHLPFKNRQD 309
Query: 372 YEEASEENAWRLLAEVSLSEERYQEVNALIFEAI 405
YE A+EE ++ + L +E ++ + + +
Sbjct: 310 YESATEETVQDIIQKYLLPQEETAQLKEHLMKCL 343
>sp|Q0V9F1|GDPP1_XENTR GDP-D-glucose phosphorylase 1 OS=Xenopus tropicalis GN=gdpgp1 PE=2
SV=1
Length = 399
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 178/354 (50%), Gaps = 45/354 (12%)
Query: 80 LDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQ 139
D + +WE+++ GLFRY + +T+++PG ++AQLN R + +R E + V Q
Sbjct: 46 FDKALQSKWEEKMNEGLFRYPLRNVQTKILPGSVSYVAQLNIQRSINRRKPE-DIWSVQQ 104
Query: 140 PFDGNKFNFTKVGQEEVLFQFEASE-DGEVQFH----------------------PSAPI 176
F+ N+FN+ K+ EE++FQ SE + V H S +
Sbjct: 105 KFNPNQFNYNKIKSEEIVFQMIRSEAEHSVDSHIVQGSMVNGMGSSECKSGSTPQGSCTL 164
Query: 177 DVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYN 236
+ ++S ++V INVSP+E+GHVL +P CLPQ + + L + + +P FR+G+N
Sbjct: 165 ECKSSCTLVVINVSPLEFGHVLFMPDPSLCLPQILTENLMLFGMESVFLSSHPGFRVGFN 224
Query: 237 SLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF-EGGNS 295
SLG FA++NHLH +Y+ IE + +K + + + ++P G +F G
Sbjct: 225 SLGGFASVNHLHLHGFYLDHELLIESSCSKPLCPE---INFHLVTHFPAPGFLFYTDGKD 281
Query: 296 LEDLSNTVSDACICLQENNIPYNVLIA-----DCGK----RIFLLPQCYAEKQALG--EV 344
L+ + + L NI +N+ + D GK R + +A K + G EV
Sbjct: 282 LKSTAQKICKVTDFLVAKNIAHNLFVTRGSNPDTGKVSEDRNGIRVIIWARKPSFGAKEV 341
Query: 345 SSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVN 398
S+ N A+ E++GH+ +K ++D+ +E++ ++ L+++ + +++
Sbjct: 342 SA------FNVALCELAGHLPVKNQEDFISITEDSVIAIIHSCLLADDEFTQLS 389
>sp|A8E5Y3|GDPP1_XENLA GDP-D-glucose phosphorylase 1 OS=Xenopus laevis GN=gdpgp1 PE=2 SV=1
Length = 399
Score = 152 bits (383), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 186/382 (48%), Gaps = 48/382 (12%)
Query: 64 GVHGHEVREPEPPVAFL---DSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLN 120
G+ E R+ +FL D + +WE ++ GLFRY + +T+++PG ++AQLN
Sbjct: 28 GLSWKERRQYAEDTSFLSPFDKALQSKWEQKMNEGLFRYPLRNLQTKILPGSLSYVAQLN 87
Query: 121 EGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEV----QFHPSAP- 175
R + +R E + + Q F+ N+FN+ K+ EE++FQ SE + H S+
Sbjct: 88 IQRSINRRKPE-DIWSIQQKFNPNQFNYNKIKPEEIVFQMIRSETEHCVDSDKVHGSSVN 146
Query: 176 ------------------IDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFL 217
++ + ++V INVSP+E+GHVL +P CLPQ + D L
Sbjct: 147 GMGTSDCKSGSTHQRCCILECKGGCTLVVINVSPLEFGHVLFMPDPSLCLPQILTEDLML 206
Query: 218 LALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKI 277
L + +P FR+G+NSLG FA++NHLH +Y+ IE + +K + +
Sbjct: 207 FGLESVLLSAHPGFRVGFNSLGGFASVNHLHLHGFYLDHDLFIESSSSKPLCPE---MNF 263
Query: 278 SELLNYPVRGLVF-EGGNSLEDLSNTVSDACICLQENNIPYNVLIA-----DCGK----R 327
+ ++P +F G +L+ + + L NI +N+ I D G R
Sbjct: 264 HLITHFPAPSFLFYTDGRNLKSTAQNICKVTDFLVAKNIAHNLFITRGSNPDTGNGSEGR 323
Query: 328 IFLLPQCYAEKQALG--EVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLA 385
+ +A K + G EVS+ N A+ E++GH+ +K ++D+ +E++ ++
Sbjct: 324 NGIRVNIWARKPSFGAKEVSA------FNVALCELAGHLPVKNQEDFNSITEDSVIDIIH 377
Query: 386 EVSLSEERYQEVNALIFEAIAR 407
L+++ + +++ + E + +
Sbjct: 378 NCLLADDEFTQLSLDLVEYLRK 399
>sp|Q5ZR76|GDPP1_CAEEL GDP-D-glucose phosphorylase 1 OS=Caenorhabditis elegans GN=gdpgp1
PE=1 SV=1
Length = 482
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 160/362 (44%), Gaps = 52/362 (14%)
Query: 62 EMGVHGHEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNE 121
E G HE E + L L+ WE+ Q F Y + C R + G+Y QLN
Sbjct: 83 ENGNSNHEKDEKKA----LKELLHERWENAKQYNAFNYPLN-CMYRCLDGKYDLSMQLNI 137
Query: 122 GR-HLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPI--DV 178
R L+++P F+ + +PF+ +FNF K+ E+LF + D PI D+
Sbjct: 138 ERGELRRKPMHFK--NIKEPFNHLRFNFAKLHDHEILFYLKCDTD---------PISNDL 186
Query: 179 ENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSL 238
+ +VA+N SP+E H L++P V +C PQ + + +A+ + + F + +NSL
Sbjct: 187 LDR-HLVAVNASPLERDHSLIVPSVNKCSPQVLTLQAVRIAVDLMLLVDDDMFHILFNSL 245
Query: 239 GAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVR---GLVF--EGG 293
A++NHLH A Y +P + + V ++ PV +VF +
Sbjct: 246 LGQASVNHLHLHAMY----WPYDSDLINRKCEPLHDVPNVYVIRPPVWICPAIVFQLDSL 301
Query: 294 NSLEDLSNTVSDACICLQENNIPYNVLIADC---------------GKRIFLLPQCYA-- 336
++ E + L E+N +N+ +A G+R L+ CY
Sbjct: 302 DNYEQFKMNIYKCVEHLTESNQAHNLFLARAQPIRTTGAEKEEDRRGERPQLV-TCYVFP 360
Query: 337 EKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLL-AEVSLSEERYQ 395
+G + NPA E++G++ + +E A+E++ R++ E SL ++ ++
Sbjct: 361 RMNMIGAKPP----SNFNPAANELAGNLTSYTIRFFESANEQSVIRIIEEEASLDDDTFR 416
Query: 396 EV 397
+
Sbjct: 417 SL 418
>sp|C0ZZA3|SYD_RHOE4 Aspartate--tRNA ligase OS=Rhodococcus erythropolis (strain PR4 /
NBRC 100887) GN=aspS PE=3 SV=1
Length = 602
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 359 EISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGDDANGGVA-- 416
EI G + +KD +E R+ + +SEE QE + +A A G +GG+A
Sbjct: 482 EIGGGSIRIHRKDIQE-------RVFKVMGISEEEAQEQFGFLLDAFAFGAPPHGGIAFG 534
Query: 417 ----------ESVIGEADAKPKSGGEVDAINKNSCP 442
I E A PKSGG VD + P
Sbjct: 535 WDRITALLAGMDSIREVIAFPKSGGGVDPLTDAPAP 570
>sp|Q5SME9|MIAB_THET8 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=miaB
PE=3 SV=1
Length = 465
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 23/137 (16%)
Query: 69 EVREPEPPVAFLDSLVLG---EWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEG--- 122
++RE P +++G E E+ Q L YD + Y FI G
Sbjct: 305 KIREALPDAVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQ-----AYMFIYSPRPGTPA 359
Query: 123 -RHLKKRPTEFRVDKVLQPFDGNK-----FNFTKVGQE-EVLFQFEASEDGEVQFHPSAP 175
+H + P E +V+++++ + K N VG+ EVL + EA E+G VQ H
Sbjct: 360 YKHFQDLPREVKVERLMRLIEKQKEWSYRRNLEWVGKTVEVLVRGEAKEEGFVQGH---- 415
Query: 176 IDVENSPSVVAINVSPI 192
D N P +V + +P+
Sbjct: 416 -DRGNHPVLVPASQAPV 431
>sp|Q72J39|MIAB_THET2 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=miaB PE=3 SV=1
Length = 465
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 23/137 (16%)
Query: 69 EVREPEPPVAFLDSLVLG---EWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEG--- 122
++RE P +++G E E+ Q L YD + Y FI G
Sbjct: 305 KIREALPDAVLSTDIIVGFPGETEEDFQETLSLYDEVGYDQ-----AYMFIYSPRPGTPA 359
Query: 123 -RHLKKRPTEFRVDKVLQPFDGNK-----FNFTKVGQE-EVLFQFEASEDGEVQFHPSAP 175
+H + P E +V+++++ + K N VG+ EVL + EA E+G VQ H
Sbjct: 360 YKHFQDLPREVKVERLMRLIEKQKEWSYRRNLEWVGKTVEVLVRGEAKEEGFVQGH---- 415
Query: 176 IDVENSPSVVAINVSPI 192
D N P +V + +P+
Sbjct: 416 -DRGNHPVLVPASQAPV 431
>sp|Q4UKJ1|RECN_RICFE DNA repair protein RecN OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=recN PE=3 SV=1
Length = 546
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 359 EISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNAL-----IFEA-IARGDDAN 412
E+ +L +KK YE AS+ + RL+A L E +QE+ L IFE I G +
Sbjct: 339 ELKAQEMLLQKKYYELASDLSVKRLIAAKHLEESLHQELKQLKMAKAIFEIEIIAGKEPT 398
Query: 413 GGVAESVIGEADAKPKSGGEVDAINK 438
+ ++ +A P G +AINK
Sbjct: 399 ASGNDDIVFKASTNP--GMATEAINK 422
>sp|A4TBU4|SYD_MYCGI Aspartate--tRNA ligase OS=Mycobacterium gilvum (strain PYR-GCK)
GN=aspS PE=3 SV=1
Length = 590
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 359 EISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNALIFEAIARGDDANGGVA-- 416
EI G + ++D +E R+ A + +S+E ++ + EA G +GG+A
Sbjct: 482 EIGGGSLRIHRRDVQE-------RVFAMMGISQEEAEDKFGFLLEAFTFGAPPHGGIAFG 534
Query: 417 ----------ESVIGEADAKPKSGGEVDAINKNSCP 442
I E A PKSGG VD + + P
Sbjct: 535 WDRIVALLAGLDSIREVIAFPKSGGGVDPLTEAPAP 570
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,295,385
Number of Sequences: 539616
Number of extensions: 7579797
Number of successful extensions: 16887
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 16850
Number of HSP's gapped (non-prelim): 21
length of query: 455
length of database: 191,569,459
effective HSP length: 121
effective length of query: 334
effective length of database: 126,275,923
effective search space: 42176158282
effective search space used: 42176158282
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)