Query 012827
Match_columns 455
No_of_seqs 249 out of 465
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:43:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03103 GDP-L-galactose-hexos 100.0 9E-114 2E-118 880.6 34.7 392 2-404 1-394 (403)
2 KOG2720 Predicted hydrolase (H 100.0 2.5E-89 5.4E-94 677.3 23.3 385 2-411 1-398 (431)
3 COG4360 APA2 ATP adenylyltrans 100.0 2E-30 4.4E-35 248.0 11.7 192 180-391 91-298 (298)
4 PF09830 ATP_transf: ATP adeny 99.4 2.1E-13 4.5E-18 107.4 5.3 62 316-390 1-62 (62)
5 COG0537 Hit Diadenosine tetrap 99.2 3.3E-11 7.2E-16 108.9 9.8 78 177-254 18-104 (138)
6 PRK10687 purine nucleoside pho 99.2 2.5E-11 5.4E-16 107.1 8.0 78 177-254 20-107 (119)
7 cd00468 HIT_like HIT family: H 99.2 1.1E-10 2.4E-15 95.0 8.7 75 179-253 3-86 (86)
8 PF01230 HIT: HIT domain; Int 99.1 2.4E-10 5.2E-15 96.3 8.2 76 179-254 11-95 (98)
9 cd01276 PKCI_related Protein K 99.0 1.1E-09 2.3E-14 93.0 8.4 76 178-253 18-103 (104)
10 cd01275 FHIT FHIT (fragile his 99.0 2.3E-09 5E-14 94.6 9.3 77 178-254 18-103 (126)
11 cd01277 HINT_subgroup HINT (hi 98.9 6.5E-09 1.4E-13 87.6 9.3 77 178-254 18-103 (103)
12 cd01278 aprataxin_related apra 98.9 5.7E-09 1.2E-13 88.8 8.6 75 178-253 20-104 (104)
13 KOG3275 Zinc-binding protein o 98.8 1.4E-08 3E-13 88.8 7.2 74 178-253 34-118 (127)
14 KOG3379 Diadenosine polyphosph 98.5 3.3E-07 7.2E-12 82.3 8.4 75 180-254 23-106 (150)
15 TIGR01239 galT_2 galactose-1-p 98.3 2.6E-05 5.7E-10 82.6 15.9 209 153-377 168-419 (489)
16 PRK05270 galactose-1-phosphate 98.2 1.6E-05 3.6E-10 84.3 12.3 201 153-369 171-412 (493)
17 PF11969 DcpS_C: Scavenger mRN 98.1 9.8E-06 2.1E-10 71.2 7.7 74 180-256 20-106 (116)
18 PRK11720 galactose-1-phosphate 98.1 1E-05 2.2E-10 83.7 8.4 78 177-254 213-302 (346)
19 TIGR00209 galT_1 galactose-1-p 98.0 1.7E-05 3.7E-10 82.1 8.8 78 177-254 213-302 (347)
20 cd00608 GalT Galactose-1-phosp 97.8 7.8E-05 1.7E-09 76.5 8.5 78 177-254 203-294 (329)
21 PLN02643 ADP-glucose phosphory 97.7 0.00014 3.1E-09 75.0 8.9 77 178-254 213-302 (336)
22 COG4468 GalT Galactose-1-phosp 97.6 0.00027 5.9E-09 73.4 9.4 201 154-370 174-415 (503)
23 PF04677 CwfJ_C_1: Protein sim 97.2 0.0023 5.1E-08 56.9 9.5 96 152-256 9-110 (121)
24 KOG4359 Protein kinase C inhib 97.2 0.00089 1.9E-08 60.7 6.5 75 179-254 52-136 (166)
25 PLN02643 ADP-glucose phosphory 96.0 1.5 3.3E-05 45.5 21.6 47 210-256 123-178 (336)
26 cd00608 GalT Galactose-1-phosp 95.7 0.26 5.6E-06 50.8 14.2 75 182-256 59-164 (329)
27 KOG2476 Uncharacterized conser 95.0 0.03 6.5E-07 59.7 4.8 98 151-256 316-418 (528)
28 PRK11720 galactose-1-phosphate 94.5 1.9 4.2E-05 44.9 16.7 74 183-256 72-174 (346)
29 TIGR00209 galT_1 galactose-1-p 94.3 2.1 4.6E-05 44.7 16.5 186 183-388 72-339 (347)
30 KOG0562 Predicted hydrolase (H 91.6 0.32 6.9E-06 45.7 5.0 71 182-256 24-107 (184)
31 PF02611 CDH: CDP-diacylglycer 90.1 0.99 2.2E-05 44.4 7.2 69 182-254 34-117 (222)
32 TIGR00672 cdh CDP-diacylglycer 89.7 0.91 2E-05 45.3 6.7 70 181-254 61-145 (250)
33 PRK05471 CDP-diacylglycerol py 84.9 1.4 3E-05 44.1 4.8 68 183-254 64-146 (252)
34 COG1085 GalT Galactose-1-phosp 82.7 12 0.00027 39.0 10.8 47 210-256 110-165 (338)
35 KOG2477 Uncharacterized conser 82.5 4.3 9.4E-05 44.3 7.6 97 154-256 407-509 (628)
36 COG2134 Cdh CDP-diacylglycerol 59.8 35 0.00076 33.6 7.2 71 181-254 62-146 (252)
37 PF02744 GalP_UDP_tr_C: Galact 56.0 60 0.0013 30.4 8.0 75 179-253 34-119 (166)
38 COG1085 GalT Galactose-1-phosp 42.2 27 0.00058 36.6 3.6 47 178-224 205-251 (338)
39 PF01087 GalP_UDP_transf: Gala 38.5 94 0.002 29.3 6.5 50 207-256 123-181 (183)
40 TIGR03009 plancto_dom_2 Planct 23.6 2.6E+02 0.0057 27.4 6.8 50 80-133 1-50 (210)
41 PF09769 ApoO: Apolipoprotein 20.5 1.7E+02 0.0038 26.7 4.7 51 353-404 98-149 (158)
No 1
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=100.00 E-value=8.8e-114 Score=880.62 Aligned_cols=392 Identities=79% Similarity=1.299 Sum_probs=371.5
Q ss_pred ceeeeecceeeccccchhhHHHHHhhcccCCcCcccccccccCCccccceeeccccccccCCcccCCCCCCCCCchhhhh
Q 012827 2 MLRIKRVPTVVSNYQKEETEEAAAAARRVSGCGRNCLNKCCIQGAKLPLYAFKRVNKFKTEMGVHGHEVREPEPPVAFLD 81 (455)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 81 (455)
|||||||||||||||+|+... |||||||++||++|++||||+|+.......+......+ .++...++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~c~~~~~~~pl~~~~~~~~~~~~~~~~~~~--~~~~~~s~ld 69 (403)
T PLN03103 1 MLTIKRVPTVVSNYQDDDELG---------GCGRNCLGKCCLPGAKLPLYAFKKVSKDDSGKLGSFSS--KPEPSVSFLD 69 (403)
T ss_pred Ccceeecchhhhhhhhhcccc---------CcchhhhhhcCCCCccCchhhhcccccccccccccccc--cCcCCccHHH
Confidence 899999999999999999544 99999999999999999999999998776544332333 5578899999
Q ss_pred HHHHHHHHHHHHcCCceeeccceeEEEecCceeEEEEEccCccccCCCCcccccccccCCCCCCcccccCCCcceeEEee
Q 012827 82 SLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFE 161 (455)
Q Consensus 82 ~lll~~We~a~~~G~FrY~l~~~~tKvl~G~~~fvaQlNp~R~lkkRP~~~~~~~~~~pFd~~~FnF~K~~~eE~Lf~~~ 161 (455)
++|+++|++||++|+|||+|++|+||++||+++|+||||++|++||||++|+++++.|||||.||||||++++|+||+++
T Consensus 70 ~~L~~~Wedr~~~GlFrY~l~~~~tkvlpG~~gFvaQLN~~R~~krR~~~f~i~~v~qpFd~~kFNF~KV~~~EvLf~~~ 149 (403)
T PLN03103 70 SLLLAQWEDRMARGLFRYDVTACETKVIPGKYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGKKFNFTKVGQEEVLFQFE 149 (403)
T ss_pred HHHHHHHHHHHhcCCcccccccceeEEecCccceEEEecccchhccCCCccchhhccCCCCCCcccCCCCCCceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCcccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Q 012827 162 ASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAF 241 (455)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~~~~~gf~vfyNs~gAg 241 (455)
+++++.+.++|++|+...++.+.|++|+|||++||+||||+...|+||+|+.+.+..++++++++++++|||||||+||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~~~l~la~~~a~~~~~p~frvgYNSlGA~ 229 (403)
T PLN03103 150 QGEDDIPEFFPSAPIDASNSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDPDSFLLALYMAAEANNPYFRVGYNSLGAF 229 (403)
T ss_pred cCCCcccccccCCccccCCCccEEEEeCCCCccCeEEEcCCcccCCCeEecHHHHHHHHHHHHhcCCCcEEEEecCCccc
Confidence 99999999999999877788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEecCCCCcccCCCcccee--ccCCCceeeecCCCcceeEEEecCCCHHHHHHHHHHHHHhhcCCCCCeEE
Q 012827 242 ATINHLHFQAYYMALPFPIEKAPTKKII--STGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNV 319 (455)
Q Consensus 242 ASv~HlHfQ~~~l~~~lPiE~~~~~~l~--~~~~g~~i~~l~~yP~~~fvf~~~~~~e~L~~~l~~~l~~L~~~~~PyNL 319 (455)
|||||||||++|++++||||++|++++. ....|+.++.+.+||+++|+|+++++.+++++.|++++++|+++++||||
T Consensus 230 ASvNHLHFQa~yl~~~lPvE~ap~~~l~~~~~~~g~~vy~L~~yP~~~lvf~~~~~~~~l~~~v~~~~~~L~~~niP~NL 309 (403)
T PLN03103 230 ATINHLHFQAYYLANPFPVEKAPTVRIPHGTAKSGVKVSELVDYPVRGLVFEGGSDLEDLANSVADACICLQDNNIPYNL 309 (403)
T ss_pred cCcceeeeeecccCCCCccccCccccccccccCCCceEEEecCCCceEEEEEeCccHHHHHHHHHHHHHhhccCCcceEE
Confidence 9999999999999999999999998883 33567889999999999999997678999999999999999999999999
Q ss_pred EEEcCCcEEEEEecchHhhhhcccccccccccccccceecccceeeecChhHHHHHhHHHHHHHHHHhcCCHHHHHHHHH
Q 012827 320 LIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQEVNA 399 (455)
Q Consensus 320 lit~~g~~v~l~PR~y~~k~~~g~~~~~lL~~~~spaa~elaG~llvk~~edfe~lte~~~~~IL~EVsl~~~~f~~l~~ 399 (455)
|+|++|+|++|||+||++|++.|++++++|+++||||+|||||||++|+++||+++||+.+++||+||+|++++|++|++
T Consensus 310 ~i~~~g~rvflfP~Cy~~k~~~g~v~~~lL~s~~NPA~~EmsG~l~~~~~eDfe~lTE~~~~~il~EvsLse~~f~ev~~ 389 (403)
T PLN03103 310 LISDCGKRVFLFPQCYAEKQALGEVSQELLDTQVNPAVWEISGHIVLKRKEDYERATEEYAWRLLAEVSLSEERFQEVKA 389 (403)
T ss_pred EEEcCCeEEEEeCchhhhhhhccccchhHhhccCChhhHhhcceeeecchHhhhhcCHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 012827 400 LIFEA 404 (455)
Q Consensus 400 ~l~~~ 404 (455)
+|++.
T Consensus 390 ~i~~~ 394 (403)
T PLN03103 390 LCFAA 394 (403)
T ss_pred HHHhc
Confidence 99988
No 2
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=100.00 E-value=2.5e-89 Score=677.32 Aligned_cols=385 Identities=66% Similarity=1.076 Sum_probs=358.2
Q ss_pred ceeeeecceeeccccchhhHHHHHhhcccCCcCcccccccccCC----------ccccceeeccccccccCCcccCCCCC
Q 012827 2 MLRIKRVPTVVSNYQKEETEEAAAAARRVSGCGRNCLNKCCIQG----------AKLPLYAFKRVNKFKTEMGVHGHEVR 71 (455)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~p~y~~~~~~~~~~~~~~~~~~~~ 71 (455)
|++||||||++||||+++..+ ++.|||||||+.||+.| .++|+|..+......+.
T Consensus 1 ~~~ifr~p~~yS~~~~~~~~~------~~~~~~~~~L~l~~l~s~~~r~~~~~~~~~ply~~~ns~~~~e~--------- 65 (431)
T KOG2720|consen 1 FLKIFRVPTVYSNYQKDGFSE------RFSGCGRNCLPLCCLNSADCRQKEDQEVKLPLYRCKNSKKSYET--------- 65 (431)
T ss_pred Ccceeeccccccccccccccc------cccCCcccccchhhccccccccchhhhhhhhHhhcccccccccc---------
Confidence 689999999999999999876 67799999999999999 89999999987654321
Q ss_pred CCCCchhhhhHHHHHHHHHHHHcCCceeeccceeEEEecCceeEEEEEccCc-cccCCCCcccccccccCCCCCCccccc
Q 012827 72 EPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGR-HLKKRPTEFRVDKVLQPFDGNKFNFTK 150 (455)
Q Consensus 72 ~~~~~~s~~d~lll~~We~a~~~G~FrY~l~~~~tKvl~G~~~fvaQlNp~R-~lkkRP~~~~~~~~~~pFd~~~FnF~K 150 (455)
+.++...++.++++.+||++.++|+|||+|++|+||+|||+|||.+|||.+| +++|||++|+ .+.+|||..+|||+|
T Consensus 66 ~~e~~~~~l~~l~~~rWe~~~q~glF~Y~l~~c~tr~ipGkygf~aqLN~~R~~lrrrP~~f~--~v~~~F~h~~FNF~K 143 (431)
T KOG2720|consen 66 SLEGPVQFLESLVKGRWEDRFQRGLFRYDLTACETRVIPGKYGFYAQLNEGRNHLRRRPTEFR--VVLQPFDHMKFNFTK 143 (431)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhccccccccccceeccCcccceeeeeccccchhhcCCchhh--hcccccccceecccc
Confidence 2356789999999999999999999999999999999999999999999999 8999999986 599999999999999
Q ss_pred CCCcceeEEeecCCCCccccCCCCCcccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 012827 151 VGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPY 230 (455)
Q Consensus 151 ~~~eE~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~~~~~g 230 (455)
+.++|+||+++... +.+|.+.+++. +|+||++||++||.||||+..++.||+||.+.++.++.+|++.+++.
T Consensus 144 v~~~Ellf~~k~~~-------~~m~~dpe~~~-vvaIN~sPie~~H~LiiP~V~kc~pQrit~~al~lav~~m~~~dd~~ 215 (431)
T KOG2720|consen 144 VGQEELLFQFKAAT-------DPMPGDPENSP-VVAINVSPIEYGHVLIIPRVLKCLPQRITHKALLLAVTMMAEADDPY 215 (431)
T ss_pred cccceEEEEEecCC-------CCCCCCcccCc-eEEEecCccccCcEEEecchhccCcceeeHHHHHHHHHHHHhcCCch
Confidence 99999999999773 23344444554 99999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCeeEEEEEecCCCCcccCCCccceeccCCCceee-ecCCCcceeEEEecCCCHHHHHHHHHHHHHh
Q 012827 231 FRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKIS-ELLNYPVRGLVFEGGNSLEDLSNTVSDACIC 309 (455)
Q Consensus 231 f~vfyNs~gAgASv~HlHfQ~~~l~~~lPiE~~~~~~l~~~~~g~~i~-~l~~yP~~~fvf~~~~~~e~L~~~l~~~l~~ 309 (455)
||+||||+||.|||||||||++|+|.++||+++++.++.....++.+. .+..||+..+.+.+.+..+++...||.++.+
T Consensus 216 frlgyNSlga~AsVNHLHfha~y~p~d~~i~~~p~~~l~~~vn~~~ir~p~~~~pv~~~~~ds~~~~~e~~d~vy~c~~~ 295 (431)
T KOG2720|consen 216 FRLGYNSLGAFASVNHLHFHAYYLPMDFPIEKAPLDKLTTTVNGVKIRAPLLGYPVRFLLNDSGEQVAELVDTVYDCAVC 295 (431)
T ss_pred hheecccchhhhhhhhhhhhhhhccccCccccCcchhhccccceEEecccccccceEEEEeccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888888887 7889999999999998999999999999999
Q ss_pred hcCCCCCeEEEEEcCCcEEEEEecchHhhhhcccccccccccccccceecccceeeecChhHHHHHhHHHHHHHHH-Hhc
Q 012827 310 LQENNIPYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLA-EVS 388 (455)
Q Consensus 310 L~~~~~PyNLlit~~g~~v~l~PR~y~~k~~~g~~~~~lL~~~~spaa~elaG~llvk~~edfe~lte~~~~~IL~-EVs 388 (455)
|+++|+|||||+++.|.|+.+-|+||..+++.||+....+.++||||+||+||+|+.|+++|||.++|+.+|++|+ |+|
T Consensus 296 l~~nN~phNlfls~~grR~g~~pqcyvf~~a~~e~~~~k~~tqfNpa~~ElaG~m~l~~~~~~E~asE~~v~r~i~teas 375 (431)
T KOG2720|consen 296 LQNNNIPHNLFLSDQGRRIGLSPQCYVFKQALGEVSVNKLLTQFNPAVWELAGHMVLKRKEDYEGASELQVWRLIATEAS 375 (431)
T ss_pred HhhCCCCceEEeeccCccccCCCceEEehhhhcccccccChhhcChHHHhhcCCccccchhhhccccHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888999999999999999999999999999999999999 999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCC
Q 012827 389 LSEERYQEVNALIFEAIARGDDA 411 (455)
Q Consensus 389 l~~~~f~~l~~~l~~~~~~~~~~ 411 (455)
+++++|.++...+++.+|++..+
T Consensus 376 ls~e~fre~~tli~eaig~s~q~ 398 (431)
T KOG2720|consen 376 LSEERFREVITLIFEAIGYSLQE 398 (431)
T ss_pred cCHHHHHHHHHHHhhhhcccccc
Confidence 99999999999999999999843
No 3
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=99.97 E-value=2e-30 Score=248.05 Aligned_cols=192 Identities=18% Similarity=0.193 Sum_probs=144.1
Q ss_pred CCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHHhCCCCeEEEEec-CCCCCCCCeeEEEEEecCCCC
Q 012827 180 NSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNS-LGAFATINHLHFQAYYMALPF 258 (455)
Q Consensus 180 ~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~~~~~gf~vfyNs-~gAgASv~HlHfQ~~~l~~~l 258 (455)
+..|.+++||||+.+.|+|||++.|++|...||..+|..|+.++...+ |+ ||||| +.||||++|+|+|++++|- .
T Consensus 91 s~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~vL~~ld--gl-vFYNsGp~aGaSq~HkHLQi~pmPf-v 166 (298)
T COG4360 91 SDTHKLLLNKFPVVDEHLLIVTREFEDQESALTLADFTTAYAVLCGLD--GL-VFYNSGPIAGASQDHKHLQIVPMPF-V 166 (298)
T ss_pred chhHhhhhhcCCcccceeEEeehhhhhccccCCHHHHHHHHHHHhccc--ce-EEecCCCCcCcCCCccceeEeeccc-c
Confidence 446899999999999999999999999999999999999999988755 76 99999 9999999999999999862 3
Q ss_pred cccCCCccceeccCCCceeeecCCCcceeEEEecC--C-CHHHHHH-----HHHHHHHhh----cCC---CCCeEEEEEc
Q 012827 259 PIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGG--N-SLEDLSN-----TVSDACICL----QEN---NIPYNVLIAD 323 (455)
Q Consensus 259 PiE~~~~~~l~~~~~g~~i~~l~~yP~~~fvf~~~--~-~~e~L~~-----~l~~~l~~L----~~~---~~PyNLlit~ 323 (455)
+.++..+....++.+..... +..|+.+++.... . ..+++.. .+++++..+ .+. .-|||||+||
T Consensus 167 ~~~~~lpn~~dhFl~t~nte--PlvsF~havapl~~~~~~d~dlgamcy~sIyqrlL~~~gl~t~e~p~~~~sYNlllTr 244 (298)
T COG4360 167 AFQDQLPNGKDHFLPTFNTE--PLVSFAHAVAPLPSAWVVDEDLGAMCYLSIYQRLLTFFGLWTNEDPELSKSYNLLLTR 244 (298)
T ss_pred ccccccCchHhhcchhcccC--CCcchhheeccCChHhccChhhhhHHHHHHHHHHHHHHhhhccCCcccCcceeeeeee
Confidence 33443332222221111111 1133555555432 1 3344432 334565543 222 2369999999
Q ss_pred CCcEEEEEecchHhhhhcccccccccccccccceecccceeeecChhHHHHHhHHHHHHHHHHhcCCH
Q 012827 324 CGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSE 391 (455)
Q Consensus 324 ~g~~v~l~PR~y~~k~~~g~~~~~lL~~~~spaa~elaG~llvk~~edfe~lte~~~~~IL~EVsl~~ 391 (455)
+ ||+|+||+.+.-+ .|++|++||||.|++|+++.++.||+.+.+.||.|||+++
T Consensus 245 e--wi~iVPRSqe~~q------------~I~vNslGfaG~lLvkn~e~le~ltq~gpl~iL~evgia~ 298 (298)
T COG4360 245 E--WICIVPRSQEDSQ------------SISVNSLGFAGMLLVKNEEELEILTQHGPLAILLEVGIAN 298 (298)
T ss_pred e--eEEEeecchhhhh------------eecccccccceeEEecCHHHHHHHhhCCchhhHhhhccCC
Confidence 7 8999999876421 3688999999999999999999999999999999999873
No 4
>PF09830 ATP_transf: ATP adenylyltransferase; InterPro: IPR019200 Diadenosine 5',5'''-P-1,P-4-tetraphosphate (Ap4A) and related diadenosine oligoposphates such as Ap3A are important intracellular and extracellular signalling molecules in prokaryotes and eukaryotes []. They are implicated in the regulation of many vital celluar functions including stress response, cell division and apoptosis. Synthesis primarily occurs via aminoacyl-tRNA synthetases adding the AMP moiety of an aminoacyl-AMP to an acceptor nucleotide, and is an inevitable byproduct of protein synthesis. The concentration of these compounds must thus be controlled both to ensure the proper regulation of various celluar processes, but also to prevent their buildup to potentially toxic levels. This domain is found in a group of ATP adenylyltransferases found in bacteria and lower eukaryotes which catalyse the interconversion of Ap4A to ATP and ADP [, , ]. While these enzymes are thought to act primarily to break down Ap4A, there is evidence to suggest that in some circumstances they may also act in a biosynthetic role. Some variability in substrate range is apparent eg the cyanobacterial enzyme can also utilise Ap3A as a substrate, while the Saccharomyces enzymes apparently cannot.; GO: 0003877 ATP adenylyltransferase activity
Probab=99.42 E-value=2.1e-13 Score=107.43 Aligned_cols=62 Identities=18% Similarity=0.393 Sum_probs=56.2
Q ss_pred CeEEEEEcCCcEEEEEecchHhhhhcccccccccccccccceecccceeeecChhHHHHHhHHHHHHHHHHhcCC
Q 012827 316 PYNVLIADCGKRIFLLPQCYAEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLS 390 (455)
Q Consensus 316 PyNLlit~~g~~v~l~PR~y~~k~~~g~~~~~lL~~~~spaa~elaG~llvk~~edfe~lte~~~~~IL~EVsl~ 390 (455)
|||+++|++ ||+|+||+.+.- ..+++.||++|+|++++|++++++++.+.++.++|++||+|
T Consensus 1 ~yNll~T~~--wm~lvPR~~~~~-----------~~~i~~Nalg~~G~llvk~~~~~~~~~~~gp~~iL~~vg~P 62 (62)
T PF09830_consen 1 SYNLLMTRR--WMMLVPRSREGF-----------SGGISVNALGFAGMLLVKSEEELDWLKEDGPMKILREVGFP 62 (62)
T ss_pred CceEEEecC--eEEEEecccccc-----------CCceeechhhheeeeeeCCHHHHHHHHHcCHHHHHHHhcCC
Confidence 799999997 899999987541 14689999999999999999999999999999999999987
No 5
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.24 E-value=3.3e-11 Score=108.89 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=64.3
Q ss_pred ccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHH--------hCCCCeEEEEec-CCCCCCCCee
Q 012827 177 DVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAE--------AGNPYFRLGYNS-LGAFATINHL 247 (455)
Q Consensus 177 ~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~--------~~~~gf~vfyNs-~gAgASv~Hl 247 (455)
.++++..++++|++|+.+||+||||+++...-..++++++..++.++.. .+.+||+++.|. ..||++|+|+
T Consensus 18 Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~agq~V~Hl 97 (138)
T COG0537 18 VYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVFHL 97 (138)
T ss_pred EEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCcccCcCcceE
Confidence 3577789999999999999999999976666667888877666665553 235799999999 7788889999
Q ss_pred EEEEEec
Q 012827 248 HFQAYYM 254 (455)
Q Consensus 248 HfQ~~~l 254 (455)
|+|++++
T Consensus 98 H~HvIPr 104 (138)
T COG0537 98 HIHIIPR 104 (138)
T ss_pred EEEEcCC
Confidence 9999985
No 6
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.23 E-value=2.5e-11 Score=107.13 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=60.5
Q ss_pred ccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHH---HHHHHH------hCCCCeEEEEec-CCCCCCCCe
Q 012827 177 DVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLA---LYMAAE------AGNPYFRLGYNS-LGAFATINH 246 (455)
Q Consensus 177 ~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~---~~l~~~------~~~~gf~vfyNs-~gAgASv~H 246 (455)
.++++..+++++.+|+.+||+|+||+++......|++++...+ +..++. .+.+||++++|. ..||+||.|
T Consensus 20 v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g~~l~~n~G~~agQ~V~H 99 (119)
T PRK10687 20 VYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYH 99 (119)
T ss_pred EEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcCCcccCE
Confidence 3567788999999999999999999976555566777753333 333322 134799999998 889999999
Q ss_pred eEEEEEec
Q 012827 247 LHFQAYYM 254 (455)
Q Consensus 247 lHfQ~~~l 254 (455)
+|+|++..
T Consensus 100 lHiHvI~g 107 (119)
T PRK10687 100 IHMHLLGG 107 (119)
T ss_pred EEEEECCC
Confidence 99999875
No 7
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.17 E-value=1.1e-10 Score=95.05 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=60.5
Q ss_pred CCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHH--------hCCCCeEEEEec-CCCCCCCCeeEE
Q 012827 179 ENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAE--------AGNPYFRLGYNS-LGAFATINHLHF 249 (455)
Q Consensus 179 ~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~--------~~~~gf~vfyNs-~gAgASv~HlHf 249 (455)
+++..++++|.+|..+||++|||+++......|+++++..++.+++. .+.++|++++|. ..+|+|+.|+|+
T Consensus 3 e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~H~ 82 (86)
T cd00468 3 DDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHVHL 82 (86)
T ss_pred ecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEEEE
Confidence 45678999999999999999999976666667787766666555543 235689999999 788999999999
Q ss_pred EEEe
Q 012827 250 QAYY 253 (455)
Q Consensus 250 Q~~~ 253 (455)
|+++
T Consensus 83 hiiP 86 (86)
T cd00468 83 HVLP 86 (86)
T ss_pred EeCC
Confidence 9974
No 8
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.11 E-value=2.4e-10 Score=96.32 Aligned_cols=76 Identities=21% Similarity=0.276 Sum_probs=60.2
Q ss_pred CCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHH--------hCCCCeEEEEec-CCCCCCCCeeEE
Q 012827 179 ENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAE--------AGNPYFRLGYNS-LGAFATINHLHF 249 (455)
Q Consensus 179 ~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~--------~~~~gf~vfyNs-~gAgASv~HlHf 249 (455)
+++.+++++|.+|..+||+||||+++......|+++++..++.+++. .+.+||++.+|. ..+|++++|+|+
T Consensus 11 e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~v~HlH~ 90 (98)
T PF01230_consen 11 EDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQSVPHLHF 90 (98)
T ss_dssp E-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSSSSS-EE
T ss_pred ECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCccCEEEE
Confidence 45678999999999999999999976556566777766666655553 246799999998 779999999999
Q ss_pred EEEec
Q 012827 250 QAYYM 254 (455)
Q Consensus 250 Q~~~l 254 (455)
|++++
T Consensus 91 HviPR 95 (98)
T PF01230_consen 91 HVIPR 95 (98)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 99986
No 9
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.02 E-value=1.1e-09 Score=92.97 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=56.5
Q ss_pred cCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCH---HHHHHHHHHHH----HhC--CCCeEEEEec-CCCCCCCCee
Q 012827 178 VENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDR---DSFLLALYMAA----EAG--NPYFRLGYNS-LGAFATINHL 247 (455)
Q Consensus 178 ~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~---~~l~~~~~l~~----~~~--~~gf~vfyNs-~gAgASv~Hl 247 (455)
++++.++++++.+|..+||+||||+++......|++ +++..+++.++ ... .+||++++|. ..||+++.|+
T Consensus 18 ~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~g~~~g~~v~H~ 97 (104)
T cd01276 18 YEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGYRLVINCGKDGGQEVFHL 97 (104)
T ss_pred EECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCCCCceeEE
Confidence 457778999999999999999999964444334443 33444433333 333 5799999998 8889999999
Q ss_pred EEEEEe
Q 012827 248 HFQAYY 253 (455)
Q Consensus 248 HfQ~~~ 253 (455)
|+|++.
T Consensus 98 HiHii~ 103 (104)
T cd01276 98 HLHLLG 103 (104)
T ss_pred EEEEeC
Confidence 999975
No 10
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=98.98 E-value=2.3e-09 Score=94.56 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=63.0
Q ss_pred cCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHH--------hCCCCeEEEEec-CCCCCCCCeeE
Q 012827 178 VENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAE--------AGNPYFRLGYNS-LGAFATINHLH 248 (455)
Q Consensus 178 ~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~--------~~~~gf~vfyNs-~gAgASv~HlH 248 (455)
+++...+++++.+|..+||++|||+++......|+++++..++.+++. .+.++|++++|. ..+|.++.|+|
T Consensus 18 ~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~gq~v~H~H 97 (126)
T cd01275 18 YRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFNIGINDGKAGGGIVPHVH 97 (126)
T ss_pred EeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCCCcCEEE
Confidence 456678999999999999999999976666677888877666665543 235699999999 77888999999
Q ss_pred EEEEec
Q 012827 249 FQAYYM 254 (455)
Q Consensus 249 fQ~~~l 254 (455)
+|++++
T Consensus 98 iHiiPR 103 (126)
T cd01275 98 IHIVPR 103 (126)
T ss_pred EEEeCC
Confidence 999986
No 11
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=98.91 E-value=6.5e-09 Score=87.64 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=62.3
Q ss_pred cCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHH--------hCCCCeEEEEec-CCCCCCCCeeE
Q 012827 178 VENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAE--------AGNPYFRLGYNS-LGAFATINHLH 248 (455)
Q Consensus 178 ~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~--------~~~~gf~vfyNs-~gAgASv~HlH 248 (455)
.+++.++++++.+|..+||++|+|+++......|+++++..+..+++. .+.++|++++|. ..+|+++.|+|
T Consensus 18 ~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~~~~~g~~~~H~H 97 (103)
T cd01277 18 YEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVH 97 (103)
T ss_pred EeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCcccCEEE
Confidence 456778999999999999999999987766777888776666655543 245799999998 66778899999
Q ss_pred EEEEec
Q 012827 249 FQAYYM 254 (455)
Q Consensus 249 fQ~~~l 254 (455)
+|++++
T Consensus 98 iHiiPR 103 (103)
T cd01277 98 VHVIPR 103 (103)
T ss_pred EEEccC
Confidence 999863
No 12
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=98.90 E-value=5.7e-09 Score=88.75 Aligned_cols=75 Identities=21% Similarity=0.348 Sum_probs=55.8
Q ss_pred cCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHH-------H---hCCCCeEEEEecCCCCCCCCee
Q 012827 178 VENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAA-------E---AGNPYFRLGYNSLGAFATINHL 247 (455)
Q Consensus 178 ~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~-------~---~~~~gf~vfyNs~gAgASv~Hl 247 (455)
++++..+++++.||..+||++|||+.+......|+++++..+.++++ . ...+||++|+|..-. +|++|+
T Consensus 20 ~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~n~g~h~~p~-~~v~H~ 98 (104)
T cd01278 20 YEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDPSEFRFGFHAPPF-TSVSHL 98 (104)
T ss_pred EeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCccCeEEEeCCCCC-cCeeeE
Confidence 45777899999999999999999997665666677765544443322 1 235689999998322 789999
Q ss_pred EEEEEe
Q 012827 248 HFQAYY 253 (455)
Q Consensus 248 HfQ~~~ 253 (455)
|+|++.
T Consensus 99 H~Hvi~ 104 (104)
T cd01278 99 HLHVIA 104 (104)
T ss_pred EEEeeC
Confidence 999973
No 13
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=98.79 E-value=1.4e-08 Score=88.81 Aligned_cols=74 Identities=22% Similarity=0.333 Sum_probs=56.6
Q ss_pred cCCCceEEEEcCCCCCCCeEEEecccCcccCCC-----CCHHHHHHHHHHHH----HhC-CCCeEEEEec-CCCCCCCCe
Q 012827 178 VENSPSVVAINVSPIEYGHVLLIPRVLECLPQR-----IDRDSFLLALYMAA----EAG-NPYFRLGYNS-LGAFATINH 246 (455)
Q Consensus 178 ~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~-----L~~~~l~~~~~l~~----~~~-~~gf~vfyNs-~gAgASv~H 246 (455)
++.+..+++.+.+|..|+|+|+||+.+ .+|. .+.+.+..++.+++ ..+ ..||||.-|. .-|.+||+|
T Consensus 34 ~Edd~~lAF~Di~Pqap~HfLvIPK~h--i~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~gYrvv~NnG~~g~QsV~H 111 (127)
T KOG3275|consen 34 FEDDRCLAFHDIAPQAPGHFLVIPKKH--ITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDGYRVVQNNGKDGHQSVYH 111 (127)
T ss_pred eeccceEEEEecCCCCCceEEEeeccc--ccchhhcccCCHHHHHHHHHHHHHHHHHhCcccceeEEEcCCcccceEEEE
Confidence 456678999999999999999999964 3332 34555555555444 344 3689999998 888899999
Q ss_pred eEEEEEe
Q 012827 247 LHFQAYY 253 (455)
Q Consensus 247 lHfQ~~~ 253 (455)
+|||++.
T Consensus 112 vH~Hvlg 118 (127)
T KOG3275|consen 112 VHLHVLG 118 (127)
T ss_pred EEEEEeC
Confidence 9999986
No 14
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=98.53 E-value=3.3e-07 Score=82.28 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=58.2
Q ss_pred CCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHHh--------CCCCeEEEEec-CCCCCCCCeeEEE
Q 012827 180 NSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEA--------GNPYFRLGYNS-LGAFATINHLHFQ 250 (455)
Q Consensus 180 ~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~~--------~~~gf~vfyNs-~gAgASv~HlHfQ 250 (455)
....++++|.-|+.|||+|++|.+-...-..||.++..+++..++.. +...+++..-. ..||++|+|.|+|
T Consensus 23 T~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQTVpHvHvH 102 (150)
T KOG3379|consen 23 TKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQTVPHVHVH 102 (150)
T ss_pred ccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcccceeEEE
Confidence 44569999999999999999999866666678877655555444432 23457777766 9999999999999
Q ss_pred EEec
Q 012827 251 AYYM 254 (455)
Q Consensus 251 ~~~l 254 (455)
++++
T Consensus 103 IlPR 106 (150)
T KOG3379|consen 103 ILPR 106 (150)
T ss_pred Eccc
Confidence 9986
No 15
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=98.26 E-value=2.6e-05 Score=82.64 Aligned_cols=209 Identities=16% Similarity=0.231 Sum_probs=137.4
Q ss_pred CcceeEEeecCCCC---------ccccCCCCCcccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHH
Q 012827 153 QEEVLFQFEASEDG---------EVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMA 223 (455)
Q Consensus 153 ~eE~Lf~~~~~~~~---------~~~~~~~~~~~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~ 223 (455)
...|++|++.++-. ....+ |+...+.....=.-+|.|...|+.+.-. +|.|-.+++..|..++++.
T Consensus 168 YPkC~LC~ENeGY~Gr~nhPAR~NhRiI---~~~L~ge~W~fQYSPY~YynEHcIvl~~--~H~PMkI~~~tF~~Ll~fv 242 (489)
T TIGR01239 168 YPACQLCMENEGFEGSVNHPARSNHRII---RVILEDEQWGFQFSPYAYFPEHSIVLKG--KHEPMEISKKTFERLLSFL 242 (489)
T ss_pred CCccchhccccCcCCCCCCCcccCceEE---EEeeCCccceeeccchheecceeEEecC--ccCCcEecHHHHHHHHHHH
Confidence 35789999987611 11122 2334566666667788888899998777 7999999999999999998
Q ss_pred HHhCCCCeEEEEec--CCCCCCC-CeeEEEEEecCCCCcccCCCccceeccC--CCceeeecCCCcceeEEEecCC--CH
Q 012827 224 AEAGNPYFRLGYNS--LGAFATI-NHLHFQAYYMALPFPIEKAPTKKIISTG--SGVKISELLNYPVRGLVFEGGN--SL 296 (455)
Q Consensus 224 ~~~~~~gf~vfyNs--~gAgASv-~HlHfQ~~~l~~~lPiE~~~~~~l~~~~--~g~~i~~l~~yP~~~fvf~~~~--~~ 296 (455)
.. -|+|.+|-|. +--|+|+ .|=|||.+. +.||+++++........ +++. ..+.+||+..+.+.+.+ .+
T Consensus 243 ~~--fPhYFiGSNADLPIVGGSILsHdHyQgG~--h~FpM~kA~i~~~f~~~~~p~V~-agivkWPmSviRL~~~~~~~l 317 (489)
T TIGR01239 243 GK--FPHYFIGSNADLPIVGGSILSHDHYQGGR--HDFPMARAEAEEVYELNDYPDVS-AGIVKWPMSVLRLQGEDPGEL 317 (489)
T ss_pred Hh--CCccccccCCCCCcccccccccccccCCC--cccccccCCcceEEecCCCCcce-EEEEeccceEEEeccCCHHHH
Confidence 86 5688899999 7778888 899999987 57999999875543332 2332 34578999888888876 34
Q ss_pred HHHHHHHHHHHHhh---------cCCCCCeEEEE---EcC-C-cEEEEEecchHhh-----------hhccccccccccc
Q 012827 297 EDLSNTVSDACICL---------QENNIPYNVLI---ADC-G-KRIFLLPQCYAEK-----------QALGEVSSELLDT 351 (455)
Q Consensus 297 e~L~~~l~~~l~~L---------~~~~~PyNLli---t~~-g-~~v~l~PR~y~~k-----------~~~g~~~~~lL~~ 351 (455)
.+++..+.+..... ....+|||-+- .+. | ..+-|+.|.-... +..-.+.++
T Consensus 318 ~~~a~~Il~~Wr~YsDe~~~I~A~t~g~pHnTITPIaR~~~~~yElDLVLRnN~Tsee~P~GIFHPH~evhHIKKE---- 393 (489)
T TIGR01239 318 AEAADHIFRTWQTYSDEKAGIAAYSDGTPHHTVTPIARRRDGKYELDLVLRDNQTSEEYPDGIFHPHQDVHHIKKE---- 393 (489)
T ss_pred HHHHHHHHHHHhCCCccccceEecCCCCccccCCceEEecCCceEEEEEeecCCCccccCCccccCcHhhhhhhhh----
Confidence 44555555443221 12457888742 222 2 3477888832100 000011222
Q ss_pred ccccceecccceeeecC--hhHHHHHhH
Q 012827 352 QVNPAVWEISGHMVLKR--KKDYEEASE 377 (455)
Q Consensus 352 ~~spaa~elaG~llvk~--~edfe~lte 377 (455)
|+|..|..|+-++|- +++.+.+.+
T Consensus 394 --NIGLIEVMGLAILP~RLk~EL~~v~~ 419 (489)
T TIGR01239 394 --NIGLIEVMGLAILPGRLKTELKEVEA 419 (489)
T ss_pred --hhhHHhhhhhhcCCHHHHHHHHHHHH
Confidence 788899999988884 444444443
No 16
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=98.17 E-value=1.6e-05 Score=84.33 Aligned_cols=201 Identities=18% Similarity=0.263 Sum_probs=134.9
Q ss_pred CcceeEEeecCC--CC-------ccccCCCCCcccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHH
Q 012827 153 QEEVLFQFEASE--DG-------EVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMA 223 (455)
Q Consensus 153 ~eE~Lf~~~~~~--~~-------~~~~~~~~~~~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~ 223 (455)
...|++|++.++ +. ....+ |+...+.....=.-+|.|...|+.+.-. +|.|-.++.+.|..++++.
T Consensus 171 YP~C~LC~ENeGY~Gr~~hPAR~NhRiI---~~~L~ge~W~fQYSPY~YynEH~Ivl~~--~H~PMkI~~~tF~rLL~fv 245 (493)
T PRK05270 171 YPKCLLCMENEGYAGRLNHPARSNHRII---RLTLGGESWGFQYSPYAYFNEHCIVLSE--KHRPMKISRKTFERLLDFV 245 (493)
T ss_pred CCcccccccccCcCCCCCCccccCceEE---EEeeCCceeeeecCchheecceeEEecC--ccCccEecHHHHHHHHHHH
Confidence 467899999886 11 11222 2344566666777788888899998877 7999999999999999998
Q ss_pred HHhCCCCeEEEEec--CCCCCCC-CeeEEEEEecCCCCcccCCCccceecc--CCCceeeecCCCcceeEEEecCC--CH
Q 012827 224 AEAGNPYFRLGYNS--LGAFATI-NHLHFQAYYMALPFPIEKAPTKKIIST--GSGVKISELLNYPVRGLVFEGGN--SL 296 (455)
Q Consensus 224 ~~~~~~gf~vfyNs--~gAgASv-~HlHfQ~~~l~~~lPiE~~~~~~l~~~--~~g~~i~~l~~yP~~~fvf~~~~--~~ 296 (455)
.. -|.|.+|-|. +--|+|+ .|=|||.+. +.||++++........ -+++. ..+.+||+..+.+.+.+ .+
T Consensus 246 ~~--fPhYFiGSNADLPIVGGSILsHdHyQgG~--h~FpM~kA~i~~~f~~~~~p~V~-agivkWPmSviRL~~~~~~~l 320 (493)
T PRK05270 246 EQ--FPHYFIGSNADLPIVGGSILSHDHYQGGR--HTFPMAKAPIEEEFTLAGYPDVK-AGIVKWPMSVIRLTSKNKDEL 320 (493)
T ss_pred Hh--CCccccccCCCCCcccccccccccccCCC--cccccccCccceEEecCCCCcce-EEEeeCcceEEEeecCCHHHH
Confidence 86 5688899999 7777788 999999987 5799999987554332 23332 34678999888888876 44
Q ss_pred HHHHHHHHHHHHhh---------cCCCCCeEEEE--E-c-CC-cEEEEEecchHhh-----------hhccccccccccc
Q 012827 297 EDLSNTVSDACICL---------QENNIPYNVLI--A-D-CG-KRIFLLPQCYAEK-----------QALGEVSSELLDT 351 (455)
Q Consensus 297 e~L~~~l~~~l~~L---------~~~~~PyNLli--t-~-~g-~~v~l~PR~y~~k-----------~~~g~~~~~lL~~ 351 (455)
.+++..+.+..... ....+|||-+- . + +| ..+-|+.|.-... +..-.+.++
T Consensus 321 ~~~a~~Il~~Wr~YsDe~~~I~a~tdg~pHnTITPIaR~~~~~yElDLVLRnN~Tsee~P~GIFHPH~e~hHIKKE---- 396 (493)
T PRK05270 321 IDAADKILEAWRGYSDESVDILAYTDGTPHNTITPIARRRGGKYELDLVLRNNRTSEEHPDGIFHPHPEVHHIKKE---- 396 (493)
T ss_pred HHHHHHHHHHHhCCCccccceeecCCCCcccCCCceEEecCCeeEEEEEeecCCCccccCCccccCchhhhccccc----
Confidence 44455555443211 12346888642 1 2 22 3477888832100 000111232
Q ss_pred ccccceecccceeeecCh
Q 012827 352 QVNPAVWEISGHMVLKRK 369 (455)
Q Consensus 352 ~~spaa~elaG~llvk~~ 369 (455)
|+|..|..|+-++|-+
T Consensus 397 --NIGLIEVMGLAILP~R 412 (493)
T PRK05270 397 --NIGLIEVMGLAILPGR 412 (493)
T ss_pred --cccHHhhhhhhcCcHH
Confidence 7888999999888864
No 17
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=98.11 E-value=9.8e-06 Score=71.16 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=48.0
Q ss_pred CCceEEEEcCCCCCCCeEEEeccc-CcccCCCCCHHHHHHH-------HHHHHHhC-----CCCeEEEEecCCCCCCCCe
Q 012827 180 NSPSVVAINVSPIEYGHVLLIPRV-LECLPQRIDRDSFLLA-------LYMAAEAG-----NPYFRLGYNSLGAFATINH 246 (455)
Q Consensus 180 ~~~~~vllN~~Pi~~gH~LlVP~~-~~~~~Q~L~~~~l~~~-------~~l~~~~~-----~~gf~vfyNs~gAgASv~H 246 (455)
++.++++-+.||..+.|+|+||+. +......|+.+++..+ .+++++.. ...+++||...- |++|
T Consensus 20 d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~~~~~~~gfH~~P---S~~H 96 (116)
T PF11969_consen 20 DDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLDSDDIRLGFHYPP---SVYH 96 (116)
T ss_dssp ETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-EGGGEEEEEESS----SSSS
T ss_pred eCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccccCCC---Ccce
Confidence 456899999999999999999997 5555556765533322 22222221 247999999833 8999
Q ss_pred eEEEEEecCC
Q 012827 247 LHFQAYYMAL 256 (455)
Q Consensus 247 lHfQ~~~l~~ 256 (455)
+|+|++..+.
T Consensus 97 LHlHvi~~~~ 106 (116)
T PF11969_consen 97 LHLHVISPDF 106 (116)
T ss_dssp -EEEEEETTS
T ss_pred EEEEEccCCC
Confidence 9999998643
No 18
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=98.08 E-value=1e-05 Score=83.74 Aligned_cols=78 Identities=12% Similarity=-0.037 Sum_probs=59.5
Q ss_pred ccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHHh--------C-CCCeEEEEec-CC--CCCCC
Q 012827 177 DVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEA--------G-NPYFRLGYNS-LG--AFATI 244 (455)
Q Consensus 177 ~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~~--------~-~~gf~vfyNs-~g--AgASv 244 (455)
.++++.++++++.+|..|||++|||+++......|+.+++..+.++++.+ + +..|++++|. .. ++.++
T Consensus 213 V~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~ 292 (346)
T PRK11720 213 VVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDH 292 (346)
T ss_pred EEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEecccCCCCCee
Confidence 35788899999999999999999999876666678887766666555432 2 3469999999 43 34456
Q ss_pred CeeEEEEEec
Q 012827 245 NHLHFQAYYM 254 (455)
Q Consensus 245 ~HlHfQ~~~l 254 (455)
.|+|+|+++.
T Consensus 293 ~H~HihiiPr 302 (346)
T PRK11720 293 WQLHAHFYPP 302 (346)
T ss_pred EEEEEEEeCC
Confidence 8999999874
No 19
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=98.02 E-value=1.7e-05 Score=82.14 Aligned_cols=78 Identities=13% Similarity=0.019 Sum_probs=58.8
Q ss_pred ccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHHh---------CCCCeEEEEec-CCCCCCCC-
Q 012827 177 DVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEA---------GNPYFRLGYNS-LGAFATIN- 245 (455)
Q Consensus 177 ~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~~---------~~~gf~vfyNs-~gAgASv~- 245 (455)
.++++.++++++.+|+.+||+||||+++......|+++++..+.++++.+ .+++|++++|. ..++++++
T Consensus 213 V~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~ 292 (347)
T TIGR00209 213 VVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQH 292 (347)
T ss_pred EEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcE
Confidence 35788899999999999999999999766666678887776666655532 23479999999 55555454
Q ss_pred -eeEEEEEec
Q 012827 246 -HLHFQAYYM 254 (455)
Q Consensus 246 -HlHfQ~~~l 254 (455)
|+|+|+++.
T Consensus 293 ~H~HihiiPr 302 (347)
T TIGR00209 293 WQLHAHFYPP 302 (347)
T ss_pred EEEEEEEeCC
Confidence 578888764
No 20
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=97.77 E-value=7.8e-05 Score=76.48 Aligned_cols=78 Identities=13% Similarity=0.002 Sum_probs=59.2
Q ss_pred ccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHH--------hC-CCCeEEEEec-CCC----CC
Q 012827 177 DVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAE--------AG-NPYFRLGYNS-LGA----FA 242 (455)
Q Consensus 177 ~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~--------~~-~~gf~vfyNs-~gA----gA 242 (455)
.++++.+++++-.+|..|+|++|||+++......|+++++..+.++++. .+ ..+|++++|+ ..+ +.
T Consensus 203 V~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~ 282 (329)
T cd00608 203 VVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCSFPYSMGWHQAPTGGKELEN 282 (329)
T ss_pred EEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccCCCCCcCCc
Confidence 3567788999999999999999999987666667888766655555543 23 4589999988 333 45
Q ss_pred CCCeeEEEEEec
Q 012827 243 TINHLHFQAYYM 254 (455)
Q Consensus 243 Sv~HlHfQ~~~l 254 (455)
++.|+|+|++++
T Consensus 283 ~~~H~Hihi~Pr 294 (329)
T cd00608 283 WYYHWHFEIPPR 294 (329)
T ss_pred ceEEEEEEeCCC
Confidence 678999999875
No 21
>PLN02643 ADP-glucose phosphorylase
Probab=97.68 E-value=0.00014 Score=74.98 Aligned_cols=77 Identities=16% Similarity=0.009 Sum_probs=56.4
Q ss_pred cCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHH--------hCCCCeEEEEec-CC--CCCCCCe
Q 012827 178 VENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAE--------AGNPYFRLGYNS-LG--AFATINH 246 (455)
Q Consensus 178 ~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~--------~~~~gf~vfyNs-~g--AgASv~H 246 (455)
++++.+++++..+|..|+|++|||+++......|+.+++..+.++++. .+.++|++++|. .. +++.+.|
T Consensus 213 ~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~pyN~~~~~~P~~~~~~~~~~ 292 (336)
T PLN02643 213 DESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPYNYMIQTSPLGVEESNLPY 292 (336)
T ss_pred EeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeecCCCccccCcccc
Confidence 467789999999999999999999987777777888766665555542 234689999999 43 3444455
Q ss_pred eE--EEEEec
Q 012827 247 LH--FQAYYM 254 (455)
Q Consensus 247 lH--fQ~~~l 254 (455)
.| +|+++.
T Consensus 293 ~H~hihi~PR 302 (336)
T PLN02643 293 THWFLQIVPQ 302 (336)
T ss_pred eEEEEEEecC
Confidence 55 577663
No 22
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.00027 Score=73.41 Aligned_cols=201 Identities=20% Similarity=0.263 Sum_probs=124.8
Q ss_pred cceeEEeecCC-CCc--------cccCCCCCcccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHH
Q 012827 154 EEVLFQFEASE-DGE--------VQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAA 224 (455)
Q Consensus 154 eE~Lf~~~~~~-~~~--------~~~~~~~~~~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~ 224 (455)
.-||+|.+..+ .+. ...+ |+...+.....=.-+|-|...|+.+.-. +|+|-.++...|.-++.++.
T Consensus 174 PkClLC~ENeGf~G~vNhPARqNhRII---p~~l~~e~W~fQySPY~YynEH~I~l~~--eH~pM~Is~~tFerlL~f~d 248 (503)
T COG4468 174 PKCLLCKENEGFYGRVNHPARQNHRII---PVELNGEQWGFQYSPYVYYNEHCIILNG--EHRPMKISRKTFERLLSFLD 248 (503)
T ss_pred cceeeeecccccccccCCcccccceeE---EEEecCceeeEeeccceeecceeEEecC--CcccceecHHHHHHHHHHHH
Confidence 45899998875 111 1111 1122344444445566777799997776 79999999999999998877
Q ss_pred HhCCCCeEEEEec--CCCCCCC-CeeEEEEEecCCCCcccCCCccceecc--CCCceeeecCCCcceeEEEecCC--CHH
Q 012827 225 EAGNPYFRLGYNS--LGAFATI-NHLHFQAYYMALPFPIEKAPTKKIIST--GSGVKISELLNYPVRGLVFEGGN--SLE 297 (455)
Q Consensus 225 ~~~~~gf~vfyNs--~gAgASv-~HlHfQ~~~l~~~lPiE~~~~~~l~~~--~~g~~i~~l~~yP~~~fvf~~~~--~~e 297 (455)
. -|+|.+|-|. +-.|+|+ .|=|+|.+. +.||++++..+..... -+++.. -+..||+..+.+.+.+ .+.
T Consensus 249 q--fPhYfiGSNADLPIVGGSILsHDHyQgG~--h~FpMakA~~eke~~~~~fp~V~a-GiVKWPMSVlRL~s~nk~~L~ 323 (503)
T COG4468 249 Q--FPHYFIGSNADLPIVGGSILSHDHYQGGR--HEFPMAKAELEKEFSFKGFPDVSA-GIVKWPMSVLRLQSKNKVELI 323 (503)
T ss_pred h--CCcccccCCCCCCcccceecccccccccc--ccccccccchhheeeecCCCcccc-ceeecchhheeeccCCHHHHH
Confidence 6 5689999999 6677778 899999987 5799999886554322 122211 2457888777777765 556
Q ss_pred HHHHHHHHHHHhhc---------CCCCCeEEEE--E--cCCc-EEEEEecc-----------hHhhhhcccccccccccc
Q 012827 298 DLSNTVSDACICLQ---------ENNIPYNVLI--A--DCGK-RIFLLPQC-----------YAEKQALGEVSSELLDTQ 352 (455)
Q Consensus 298 ~L~~~l~~~l~~L~---------~~~~PyNLli--t--~~g~-~v~l~PR~-----------y~~k~~~g~~~~~lL~~~ 352 (455)
++++.+++....-. .+..|||-+- . |+|. .+=|+-|- |-.-+..-.+.+
T Consensus 324 ~lAd~il~~Wr~YSDe~~~I~a~T~dtpHnTITPIARkR~~~yELDlVLRnNrT~e~yPdGIFHPH~evhhIKK------ 397 (503)
T COG4468 324 KLADKILKKWREYSDEEVQILAYTGDTPHNTITPIARKRGGLYELDLVLRNNRTSEEYPDGIFHPHQEVHHIKK------ 397 (503)
T ss_pred HHHHHHHHHHHHhcchhcceeeccCCCCCcccchhhhhcCCeeEEEEEEecCCccccCCCcccCCcHHhhhhhh------
Confidence 66666665543221 2357899753 1 2222 23344441 100011111122
Q ss_pred cccceecccceeeecChh
Q 012827 353 VNPAVWEISGHMVLKRKK 370 (455)
Q Consensus 353 ~spaa~elaG~llvk~~e 370 (455)
=|.|..|.-|+-++|-+-
T Consensus 398 ENIGLIEVMGLAiLP~RL 415 (503)
T COG4468 398 ENIGLIEVMGLAILPGRL 415 (503)
T ss_pred hccchheeechhhCChhh
Confidence 277889999998887643
No 23
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=97.22 E-value=0.0023 Score=56.90 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=60.9
Q ss_pred CCcceeEEeecCCCCccccCCCCCcccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHH------
Q 012827 152 GQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAE------ 225 (455)
Q Consensus 152 ~~eE~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~------ 225 (455)
.++++-||+...+-.. +++ ..-|...++.+-+-|+.+||++|||-.|......++++.+.++.+.-+.
T Consensus 9 ~~~~C~fCl~n~~~~k-hli-----isiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~ 82 (121)
T PF04677_consen 9 APDNCWFCLSNPNVEK-HLI-----ISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFA 82 (121)
T ss_pred CCCCCCCccCCCCccc-eEE-----EEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4567778887654221 121 1235556677777999999999999965544455677766665543322
Q ss_pred hCCCCeEEEEecCCCCCCCCeeEEEEEecCC
Q 012827 226 AGNPYFRLGYNSLGAFATINHLHFQAYYMAL 256 (455)
Q Consensus 226 ~~~~gf~vfyNs~gAgASv~HlHfQ~~~l~~ 256 (455)
..+.+. |||-.. ..+..|.|+|+++.|.
T Consensus 83 ~~~~~v-vf~E~~--~~~~~H~~iq~vPvp~ 110 (121)
T PF04677_consen 83 SQGKDV-VFFERV--RKRNPHTHIQCVPVPK 110 (121)
T ss_pred HcCCCE-EEEEEe--CCCCcEEEEEEEEcCH
Confidence 233455 888764 2234699999998754
No 24
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=97.19 E-value=0.00089 Score=60.72 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=56.1
Q ss_pred CCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHH-------HHHHh---CCCCeEEEEecCCCCCCCCeeE
Q 012827 179 ENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALY-------MAAEA---GNPYFRLGYNSLGAFATINHLH 248 (455)
Q Consensus 179 ~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~-------l~~~~---~~~gf~vfyNs~gAgASv~HlH 248 (455)
++..++++-+++|-...|.|+||+.+-..+..|+.++....-+ ++++. +....|+||-.+- .-||.|||
T Consensus 52 En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~td~~~~r~GFHLPP-f~SV~HLH 130 (166)
T KOG4359|consen 52 ENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNFTDFTNVRMGFHLPP-FCSVSHLH 130 (166)
T ss_pred cCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhccCCchheeEeccCCC-cceeeeee
Confidence 5677899999999999999999998777888888765544332 22222 2357899999832 33699999
Q ss_pred EEEEec
Q 012827 249 FQAYYM 254 (455)
Q Consensus 249 fQ~~~l 254 (455)
+|+++-
T Consensus 131 lH~I~P 136 (166)
T KOG4359|consen 131 LHVIAP 136 (166)
T ss_pred Eeeecc
Confidence 999874
No 25
>PLN02643 ADP-glucose phosphorylase
Probab=96.01 E-value=1.5 Score=45.46 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHH----h-CC---CCeEEEEec-CCCCCCCCeeEEEEEecCC
Q 012827 210 RIDRDSFLLALYMAAE----A-GN---PYFRLGYNS-LGAFATINHLHFQAYYMAL 256 (455)
Q Consensus 210 ~L~~~~l~~~~~l~~~----~-~~---~gf~vfyNs-~gAgASv~HlHfQ~~~l~~ 256 (455)
.|+.+.+..++.+.++ + .+ ....+|=|- ..||||..|-|-|++-++.
T Consensus 123 ~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a~~~ 178 (336)
T PLN02643 123 DLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIALPV 178 (336)
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEecCc
Confidence 4666766666665543 1 22 356788888 9999999999999998753
No 26
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=95.66 E-value=0.26 Score=50.78 Aligned_cols=75 Identities=16% Similarity=0.020 Sum_probs=50.5
Q ss_pred ceEEEEcCCCCCC---------------------CeEEEe-cccCcccCCCCCHHHHHHHHHHHHH----hC----CCCe
Q 012827 182 PSVVAINVSPIEY---------------------GHVLLI-PRVLECLPQRIDRDSFLLALYMAAE----AG----NPYF 231 (455)
Q Consensus 182 ~~~vllN~~Pi~~---------------------gH~LlV-P~~~~~~~Q~L~~~~l~~~~~l~~~----~~----~~gf 231 (455)
...|+-|+||... .|-.|| +..+.-....|+.+++..++...++ +. -...
T Consensus 59 ~~~v~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv 138 (329)
T cd00608 59 DVRVFENDFPALKPDAPAPEDSDDGLFRTAPARGRCEVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYV 138 (329)
T ss_pred eEEEECCCCccccCCCCCCcccCCcccccCCcceeEEEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 3689999999884 233333 2222333455777777666665443 22 2366
Q ss_pred EEEEec-CCCCCCCCeeEEEEEecCC
Q 012827 232 RLGYNS-LGAFATINHLHFQAYYMAL 256 (455)
Q Consensus 232 ~vfyNs-~gAgASv~HlHfQ~~~l~~ 256 (455)
.+|-|- ..||||+.|-|.|++-.+.
T Consensus 139 ~if~N~G~~aGaSl~HpH~Qi~a~~~ 164 (329)
T cd00608 139 QIFENKGAEMGASLPHPHGQIWALPF 164 (329)
T ss_pred EEEeecCcccccCCCCCCeeeeeCCc
Confidence 788898 9999999999999997753
No 27
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.03 Score=59.75 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=57.7
Q ss_pred CCCcceeEEeecCCCCccccCCCCCcccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHHh----
Q 012827 151 VGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEA---- 226 (455)
Q Consensus 151 ~~~eE~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~~---- 226 (455)
+.|.+|-||+..-+ -+.++| +. =|..+++.+=|=|+..+|+||||-.|..-...|+++.+..+.+.-..+
T Consensus 316 ~~pg~CwFCLSnP~-vEkHLI----Vs-IG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~my 389 (528)
T KOG2476|consen 316 IPPGSCWFCLSNPN-VEKHLI----VS-IGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMY 389 (528)
T ss_pred CCCCceEEEecCCC-hhhheE----EE-ecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 67889999998654 122333 11 256678899999999999999999544444456666554443331110
Q ss_pred -CCCCeEEEEecCCCCCCCCeeEEEEEecCC
Q 012827 227 -GNPYFRLGYNSLGAFATINHLHFQAYYMAL 256 (455)
Q Consensus 227 -~~~gf~vfyNs~gAgASv~HlHfQ~~~l~~ 256 (455)
....-.++|--... -| -|+|+|+++.|.
T Consensus 390 k~~g~~~vvfE~~~~-rs-~Hlq~Qvipvpk 418 (528)
T KOG2476|consen 390 KKQGKDAVVFERQSY-RS-VHLQLQVIPVPK 418 (528)
T ss_pred HhcCCeEEEEEeecc-cc-eeeEEEEEeccc
Confidence 00122344443111 12 399999987643
No 28
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=94.48 E-value=1.9 Score=44.93 Aligned_cols=74 Identities=11% Similarity=-0.046 Sum_probs=49.1
Q ss_pred eEEEEcCCCCCC--------C-------------eEEEeccc-CcccCCCCCHHHHHHHHHHHHH----h--CCCCeEEE
Q 012827 183 SVVAINVSPIEY--------G-------------HVLLIPRV-LECLPQRIDRDSFLLALYMAAE----A--GNPYFRLG 234 (455)
Q Consensus 183 ~~vllN~~Pi~~--------g-------------H~LlVP~~-~~~~~Q~L~~~~l~~~~~l~~~----~--~~~gf~vf 234 (455)
..|+-|+||... + |-.||=.. |.-....|+.+.+..++.+.++ + +-....+|
T Consensus 72 ~rv~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~i~yv~iF 151 (346)
T PRK11720 72 TYVFTNDFAALMPDTPDAPESDDPLFRCQSARGTSRVICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKTYPWVQVF 151 (346)
T ss_pred EEEEcCCCchhccCCCCCCcccCcccccCccceEEEEEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 458899999774 1 44433222 2333345677777776666553 1 13466677
Q ss_pred Eec-CCCCCCCCeeEEEEEecCC
Q 012827 235 YNS-LGAFATINHLHFQAYYMAL 256 (455)
Q Consensus 235 yNs-~gAgASv~HlHfQ~~~l~~ 256 (455)
=|- ..||||..|=|-|++-.+.
T Consensus 152 ~N~G~~~GaSl~HPH~Qi~a~p~ 174 (346)
T PRK11720 152 ENKGAAMGCSNPHPHGQIWANSF 174 (346)
T ss_pred eecCcccCcCCCCCceeeeeCCC
Confidence 787 9999999999999998754
No 29
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=94.31 E-value=2.1 Score=44.66 Aligned_cols=186 Identities=15% Similarity=0.126 Sum_probs=102.4
Q ss_pred eEEEEcCCCCCC--------C-------------eEEEeccc-CcccCCCCCHHHHHHHHHHHHH----hC--CCCeEEE
Q 012827 183 SVVAINVSPIEY--------G-------------HVLLIPRV-LECLPQRIDRDSFLLALYMAAE----AG--NPYFRLG 234 (455)
Q Consensus 183 ~~vllN~~Pi~~--------g-------------H~LlVP~~-~~~~~Q~L~~~~l~~~~~l~~~----~~--~~gf~vf 234 (455)
..|+-|+||... + |=.||=.. +.-....|+.+.+..++.+.++ +. -....+|
T Consensus 72 ~rV~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~~~i~yv~iF 151 (347)
T TIGR00209 72 TYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQIF 151 (347)
T ss_pred EEEEeCCCcccccCCCCCCcCCCcccccCCCCeeEEEEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 458999999874 1 33333222 2333345677777666665543 11 2466677
Q ss_pred Eec-CCCCCCCCeeEEEEEecCCCCcccCC-----------------Cccceec-c-CCCceeee-------cCC---Cc
Q 012827 235 YNS-LGAFATINHLHFQAYYMALPFPIEKA-----------------PTKKIIS-T-GSGVKISE-------LLN---YP 284 (455)
Q Consensus 235 yNs-~gAgASv~HlHfQ~~~l~~~lPiE~~-----------------~~~~l~~-~-~~g~~i~~-------l~~---yP 284 (455)
=|- ..||||..|=|-|++-++. +|-+-. .+.-+.. . .+...+++ ++- +|
T Consensus 152 ~N~G~~~GaSl~HPH~Qi~a~p~-vP~~~~~e~~~~~~y~~~~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~P 230 (347)
T TIGR00209 152 ENKGAAMGCSNPHPHGQIWANSF-LPNEVEREDRLQKEYFAEHKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWP 230 (347)
T ss_pred eecCcccCcCCCCCceeeeeCCC-CChHHHHHHHHHHHHHHHcCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCC
Confidence 787 9999999999999998754 442100 0000000 0 01112222 222 33
Q ss_pred ceeEEEecC------C----CHHHHHHHHHHHHHhh---cCCCCCeEEEEEcC---C-------cEEEEEecch-Hhhhh
Q 012827 285 VRGLVFEGG------N----SLEDLSNTVSDACICL---QENNIPYNVLIADC---G-------KRIFLLPQCY-AEKQA 340 (455)
Q Consensus 285 ~~~fvf~~~------~----~~e~L~~~l~~~l~~L---~~~~~PyNLlit~~---g-------~~v~l~PR~y-~~k~~ 340 (455)
...+++.-. + ...+|+..+.+++..+ -+.+.|||+.+-.. | |.+=|+||-. ...
T Consensus 231 gh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~~-- 308 (347)
T TIGR00209 231 FETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSAT-- 308 (347)
T ss_pred CeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCcccccc--
Confidence 445555411 1 2344555554444443 34566899987532 1 4588999932 210
Q ss_pred cccccccccccccccceecccceeeecChhHHHHHhHHHHHHHHHHhc
Q 012827 341 LGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVS 388 (455)
Q Consensus 341 ~g~~~~~lL~~~~spaa~elaG~llvk~~edfe~lte~~~~~IL~EVs 388 (455)
+.+ -.+.+|+.|..+-. ++.|.+.+.|++++
T Consensus 309 ---~~k-------~~aGfE~~g~~in~-------~~PE~aA~~LR~~~ 339 (347)
T TIGR00209 309 ---VRK-------FMVGYEMLGETQRD-------LTAEQAAERLRALS 339 (347)
T ss_pred ---ccc-------ceeehhhhcCccCC-------CCHHHHHHHHHhcc
Confidence 000 24578888877643 57788888888873
No 30
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=91.56 E-value=0.32 Score=45.71 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=43.8
Q ss_pred ceEEEEcCCCCCCCeEEEecccCcccCCCCC--HHHHHHHHHH-------HHHhC----CCCeEEEEecCCCCCCCCeeE
Q 012827 182 PSVVAINVSPIEYGHVLLIPRVLECLPQRID--RDSFLLALYM-------AAEAG----NPYFRLGYNSLGAFATINHLH 248 (455)
Q Consensus 182 ~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~--~~~l~~~~~l-------~~~~~----~~gf~vfyNs~gAgASv~HlH 248 (455)
..+||-++||-...|+|+.|+. ...+...+ ++.|..+.+. ..... ...|+|||-+ +-|.+|+|
T Consensus 24 ~vvvIrD~fPKa~~H~LvLpr~-s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~Ha---vPSM~~LH 99 (184)
T KOG0562|consen 24 DVVVIRDKFPKARMHLLVLPRR-SSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEALCNYFRVGFHA---VPSMNNLH 99 (184)
T ss_pred cEEEEcccCccceeEEEEeccc-chhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhhhhheeeeecc---Ccchhhee
Confidence 5789999999999999999973 33333221 1111111100 00111 1368888875 44678999
Q ss_pred EEEEecCC
Q 012827 249 FQAYYMAL 256 (455)
Q Consensus 249 fQ~~~l~~ 256 (455)
+|++..+.
T Consensus 100 LHVISkDf 107 (184)
T KOG0562|consen 100 LHVISKDF 107 (184)
T ss_pred EEEeeccc
Confidence 99998754
No 31
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=90.09 E-value=0.99 Score=44.39 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=37.7
Q ss_pred ceEEEEcCCCCCCCeEEEecccCcc---cCCCC---CHHHHHHHH----HHHHHhC----CCCeEEEEec-CCCCCCCCe
Q 012827 182 PSVVAINVSPIEYGHVLLIPRVLEC---LPQRI---DRDSFLLAL----YMAAEAG----NPYFRLGYNS-LGAFATINH 246 (455)
Q Consensus 182 ~~~vllN~~Pi~~gH~LlVP~~~~~---~~Q~L---~~~~l~~~~----~l~~~~~----~~gf~vfyNs-~gAgASv~H 246 (455)
.++|+-+ +..+.|+||||..... .|..+ +++-|..|+ .+....+ ...+-+..|| .|- ||||
T Consensus 34 gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~~gR--sQdQ 109 (222)
T PF02611_consen 34 GYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQYGR--SQDQ 109 (222)
T ss_dssp TEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-GGG---S--S
T ss_pred CEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCccCc--cccc
Confidence 3455544 7889999999985322 33344 577788877 2333333 3578899999 544 6899
Q ss_pred eEEEEEec
Q 012827 247 LHFQAYYM 254 (455)
Q Consensus 247 lHfQ~~~l 254 (455)
||+|+-.+
T Consensus 110 LHIHisCl 117 (222)
T PF02611_consen 110 LHIHISCL 117 (222)
T ss_dssp --EEEEEB
T ss_pred eEeEhhhc
Confidence 99999865
No 32
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=89.65 E-value=0.91 Score=45.34 Aligned_cols=70 Identities=24% Similarity=0.275 Sum_probs=46.6
Q ss_pred CceEEEEcCCCCCCCeEEEecccCcc---cCCCC---CHHHHHHHHH---HHHH-hC----CCCeEEEEec-CCCCCCCC
Q 012827 181 SPSVVAINVSPIEYGHVLLIPRVLEC---LPQRI---DRDSFLLALY---MAAE-AG----NPYFRLGYNS-LGAFATIN 245 (455)
Q Consensus 181 ~~~~vllN~~Pi~~gH~LlVP~~~~~---~~Q~L---~~~~l~~~~~---l~~~-~~----~~gf~vfyNs-~gAgASv~ 245 (455)
..++|+-++ .-+.|+||||..... .|+.+ +++.|..++. .+.. .+ +..+-+..|| -|- |||
T Consensus 61 ~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gR--SQn 136 (250)
T TIGR00672 61 AGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSRTGR--SQN 136 (250)
T ss_pred CCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCCCCc--ccc
Confidence 346777666 789999999985332 34444 4667777663 3322 22 3467789999 444 689
Q ss_pred eeEEEEEec
Q 012827 246 HLHFQAYYM 254 (455)
Q Consensus 246 HlHfQ~~~l 254 (455)
|||+|+-.+
T Consensus 137 QLHIHIsCl 145 (250)
T TIGR00672 137 HFHIHISCI 145 (250)
T ss_pred cceeeHhhC
Confidence 999999765
No 33
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=84.88 E-value=1.4 Score=44.13 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=45.0
Q ss_pred eEEEEcCCCCCCCeEEEecccCcc---cCCCC---CHHHHHHHHHH---HH-HhC----CCCeEEEEec-CCCCCCCCee
Q 012827 183 SVVAINVSPIEYGHVLLIPRVLEC---LPQRI---DRDSFLLALYM---AA-EAG----NPYFRLGYNS-LGAFATINHL 247 (455)
Q Consensus 183 ~~vllN~~Pi~~gH~LlVP~~~~~---~~Q~L---~~~~l~~~~~l---~~-~~~----~~gf~vfyNs-~gAgASv~Hl 247 (455)
++|+- =+.-+.|+||||..... .|+.+ +++.|..++.. +. ..+ +..+-+..|| .|- |||||
T Consensus 64 yvvlK--D~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gR--SQnQL 139 (252)
T PRK05471 64 YVLLK--DRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSRYGR--TQDQL 139 (252)
T ss_pred eEEEe--cCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCCCCc--cccce
Confidence 44444 56789999999985332 44555 46677776652 22 222 3467789999 444 68999
Q ss_pred EEEEEec
Q 012827 248 HFQAYYM 254 (455)
Q Consensus 248 HfQ~~~l 254 (455)
|+|+-.+
T Consensus 140 HIHIsCl 146 (252)
T PRK05471 140 HIHISCL 146 (252)
T ss_pred eeehhhC
Confidence 9999765
No 34
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=82.67 E-value=12 Score=39.05 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHh--------CCCCeEEEEec-CCCCCCCCeeEEEEEecCC
Q 012827 210 RIDRDSFLLALYMAAEA--------GNPYFRLGYNS-LGAFATINHLHFQAYYMAL 256 (455)
Q Consensus 210 ~L~~~~l~~~~~l~~~~--------~~~gf~vfyNs-~gAgASv~HlHfQ~~~l~~ 256 (455)
.|+...+..++.+..+. .-+...+|=|. ..+|||.+|-|-|++-++.
T Consensus 110 ~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a~~~ 165 (338)
T COG1085 110 ELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVALPV 165 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceeeccc
Confidence 46777777777776652 13578899999 9999999999999998754
No 35
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.53 E-value=4.3 Score=44.31 Aligned_cols=97 Identities=9% Similarity=0.075 Sum_probs=59.9
Q ss_pred cceeEEeecCCCCccccCCCCCcccCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHH------HhC
Q 012827 154 EEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAA------EAG 227 (455)
Q Consensus 154 eE~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~------~~~ 227 (455)
+-|++||+..--....+| .+....|+.|.--=|+..||++|||..|..-.-.|+.+.+..+..+.+ ...
T Consensus 407 D~C~rCfds~klpkhlvi-----Slg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~ 481 (628)
T KOG2477|consen 407 DTCPRCFDSEKLPKHLVI-----SLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASM 481 (628)
T ss_pred hhchhhhcccccccceeE-----EeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhc
Confidence 456777765532222222 134555666767778999999999996555555667776665544332 223
Q ss_pred CCCeEEEEecCCCCCCCCeeEEEEEecCC
Q 012827 228 NPYFRLGYNSLGAFATINHLHFQAYYMAL 256 (455)
Q Consensus 228 ~~gf~vfyNs~gAgASv~HlHfQ~~~l~~ 256 (455)
+.+. |||-..-.-..=.|+-+|.++.+.
T Consensus 482 n~dv-iFyE~a~~l~rrpH~~IeCIPvpq 509 (628)
T KOG2477|consen 482 NLDV-IFYENAPSLQRRPHTAIECIPVPQ 509 (628)
T ss_pred CCCe-EEEeccCccccCCceeEEEeechH
Confidence 4566 888873333335799899887654
No 36
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=59.83 E-value=35 Score=33.58 Aligned_cols=71 Identities=23% Similarity=0.234 Sum_probs=40.7
Q ss_pred CceEEEEcCCCCCCCeEEEecccCc---ccCCCC---CHHHHHHHHH----HHHHhC----CCCeEEEEecCCCCCCCCe
Q 012827 181 SPSVVAINVSPIEYGHVLLIPRVLE---CLPQRI---DRDSFLLALY----MAAEAG----NPYFRLGYNSLGAFATINH 246 (455)
Q Consensus 181 ~~~~vllN~~Pi~~gH~LlVP~~~~---~~~Q~L---~~~~l~~~~~----l~~~~~----~~gf~vfyNs~gAgASv~H 246 (455)
..+.|+-..+ .|.-+||+|.... ..|+.+ +++-|..++. +.+.++ +....+-.|+..+ -|+||
T Consensus 62 AG~av~Kd~~--gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaINs~~g-RtQdq 138 (252)
T COG2134 62 AGYAVLKDRN--GPLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAINSKNG-RTQDQ 138 (252)
T ss_pred CceEEEeccC--CCceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEecCccC-ccccc
Confidence 3455555544 4556777887422 234444 4555544433 223333 2467788999432 26899
Q ss_pred eEEEEEec
Q 012827 247 LHFQAYYM 254 (455)
Q Consensus 247 lHfQ~~~l 254 (455)
+|+|+-..
T Consensus 139 lHIHISCi 146 (252)
T COG2134 139 LHIHISCI 146 (252)
T ss_pred eEEEEEec
Confidence 99999765
No 37
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=55.99 E-value=60 Score=30.36 Aligned_cols=75 Identities=9% Similarity=-0.090 Sum_probs=32.6
Q ss_pred CCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHHH--------hC-CCCeEEEEec-CCCCCCC-Cee
Q 012827 179 ENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAE--------AG-NPYFRLGYNS-LGAFATI-NHL 247 (455)
Q Consensus 179 ~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~~--------~~-~~gf~vfyNs-~gAgASv-~Hl 247 (455)
.++.+++++=-+..-|..++++|+++......|+.++...+..+++. .. +.-|.++... +..+... .+.
T Consensus 34 en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~~pY~m~ihqaP~~~~~~~~~f 113 (166)
T PF02744_consen 34 ENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETSFPYNMGIHQAPVNGEDPEHWF 113 (166)
T ss_dssp E-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE---SSSS--TT--
T ss_pred ECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCCCCCchhhhcCCCCcccchhhh
Confidence 45557777777778888999999976666666776544433333332 12 2345566655 4333322 237
Q ss_pred EEEEEe
Q 012827 248 HFQAYY 253 (455)
Q Consensus 248 HfQ~~~ 253 (455)
|+|+..
T Consensus 114 H~H~e~ 119 (166)
T PF02744_consen 114 HPHFEP 119 (166)
T ss_dssp EEEEE-
T ss_pred hccccc
Confidence 777654
No 38
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=42.22 E-value=27 Score=36.62 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=32.7
Q ss_pred cCCCceEEEEcCCCCCCCeEEEecccCcccCCCCCHHHHHHHHHHHH
Q 012827 178 VENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAA 224 (455)
Q Consensus 178 ~~~~~~~vllN~~Pi~~gH~LlVP~~~~~~~Q~L~~~~l~~~~~l~~ 224 (455)
++++..+++.=-+..-|-+++|.|+++......|+.+.+..+..+++
T Consensus 205 ~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk 251 (338)
T COG1085 205 VENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILK 251 (338)
T ss_pred ecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHH
Confidence 35666677776677778899999997666666677765555544444
No 39
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=38.48 E-value=94 Score=29.26 Aligned_cols=50 Identities=16% Similarity=0.018 Sum_probs=32.2
Q ss_pred cCCCCCHHHHHHHHHHHHH----h-C---CCCeEEEEec-CCCCCCCCeeEEEEEecCC
Q 012827 207 LPQRIDRDSFLLALYMAAE----A-G---NPYFRLGYNS-LGAFATINHLHFQAYYMAL 256 (455)
Q Consensus 207 ~~Q~L~~~~l~~~~~l~~~----~-~---~~gf~vfyNs-~gAgASv~HlHfQ~~~l~~ 256 (455)
....|+.+++..++...+. + . ....-+|=|- ..||||..|-|-|++-++.
T Consensus 123 ~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a~~~ 181 (183)
T PF01087_consen 123 TLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIALPH 181 (183)
T ss_dssp -GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEEESS
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEecCCc
Confidence 3445777777766665332 1 2 2356677787 8899999999999998753
No 40
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=23.64 E-value=2.6e+02 Score=27.40 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHcCCceeeccceeEEEecCceeEEEEEccCccccCCCCccc
Q 012827 80 LDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFR 133 (455)
Q Consensus 80 ~d~lll~~We~a~~~G~FrY~l~~~~tKvl~G~~~fvaQlNp~R~lkkRP~~~~ 133 (455)
||+ +++.||...+. .+ .+++.=++++-..-+-++|-..+...-+||-+|+
T Consensus 1 ~~~-~~~~w~~~l~~--~~-t~~a~F~Q~v~d~~g~~~q~ssG~~~l~RP~kFr 50 (210)
T TIGR03009 1 LDQ-HLAAWEKKTAG--VT-NLRADVKLTRTDSVAAPATTYSGAILYMKPDFAV 50 (210)
T ss_pred Chh-HHHHHHHHHhc--cc-eEEEEEEEEEECCCCcEEEeeeEEEEEeCCCeEE
Confidence 577 79999999987 55 4544334444344455777777777777898775
No 41
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=20.51 E-value=1.7e+02 Score=26.74 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=38.9
Q ss_pred cccceecccceeeecChhHHHHHhHHHHHHHHH-HhcCCHHHHHHHHHHHHHH
Q 012827 353 VNPAVWEISGHMVLKRKKDYEEASEENAWRLLA-EVSLSEERYQEVNALIFEA 404 (455)
Q Consensus 353 ~spaa~elaG~llvk~~edfe~lte~~~~~IL~-EVsl~~~~f~~l~~~l~~~ 404 (455)
.-++..+|+|.|+.+++.-|-++.--.+.-+.. .+.+|.+ ++.+.+.+.+.
T Consensus 98 ~~I~vaglaGsIlar~r~~~~R~~~P~~~g~~~~~~~~P~t-~~n~~~~~~~~ 149 (158)
T PF09769_consen 98 GYIGVAGLAGSILARRRGIFKRFLYPLAFGGAAASYCYPQT-AKNTGDLVYDY 149 (158)
T ss_pred eeeehhhhheeeeeccCcchhhhHHHHHHHHHHhHhcCcHH-HHHHHHHHHHH
Confidence 345677999999999999999977765555444 7888876 88887777654
Done!