Query 012828
Match_columns 455
No_of_seqs 341 out of 1520
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:01:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 3.1E-21 1.1E-25 180.8 17.8 125 56-188 50-193 (194)
2 4hyg_A Putative uncharacterize 99.7 4.6E-19 1.6E-23 172.2 3.7 116 326-454 107-237 (301)
3 3iib_A Peptidase M28; YP_92679 99.1 4E-10 1.4E-14 117.8 12.2 137 42-181 64-224 (444)
4 2ek8_A Aminopeptidase; metallo 99.0 4.1E-09 1.4E-13 109.2 14.4 90 77-170 91-181 (421)
5 3fed_A Glutamate carboxypeptid 98.6 9.2E-08 3.1E-12 105.3 10.2 95 76-172 124-268 (707)
6 3kas_A Transferrin receptor pr 98.5 1.2E-07 4.1E-12 103.4 8.4 93 77-171 106-230 (640)
7 3i6s_A Subtilisin-like proteas 98.4 5.5E-07 1.9E-11 98.4 9.0 94 79-181 257-355 (649)
8 1xf1_A C5A peptidase, SCP; hyd 98.1 1.2E-05 4E-10 91.3 11.7 92 79-181 260-352 (926)
9 1y9z_A Alkaline serine proteas 98.0 9.7E-06 3.3E-10 84.3 9.0 87 90-180 258-356 (441)
10 3vta_A Cucumisin; subtilisin-l 91.7 0.21 7.2E-06 54.0 6.4 72 90-174 268-342 (621)
11 2hi6_A UPF0107 protein AF0055; 20.4 84 0.0029 27.4 3.8 74 97-180 47-124 (141)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=180.77 Aligned_cols=125 Identities=24% Similarity=0.324 Sum_probs=101.7
Q ss_pred CcceEEeeecCCCCccccccCCceeEEEEecC---CCCCCCCCCC---C-------CCCcEEEEecCC-CCHHHHHHHHH
Q 012828 56 EDTEYVGVGARFGRTLEAKEKDASQNRLVLAD---PPDCCSKPKN---K-------LTGEAILVHRGG-CSFTAKANFAE 121 (455)
Q Consensus 56 ~~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~---p~daC~~~~~---~-------l~g~IaLV~RG~-CtF~~Ka~nAq 121 (455)
....+...+|+||..+|.. +.++.++.+. +.+||++.+. . .+||||||+||+ |+|.+|++|||
T Consensus 50 ~t~~~~~e~a~FG~~~p~~---~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq 126 (194)
T 3icu_A 50 RTVWELSEEGVYGQDSPLE---PVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAY 126 (194)
T ss_dssp CEEEEEEEEEEECTTSCCS---CEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHH
T ss_pred ceeeecccccccCCCCCCC---CcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHH
Confidence 3445889999999998874 5778888763 7899998762 1 468999999999 99999999999
Q ss_pred HcCCcEEEEEcCCC---cccccccCCCCCCCcccceEEEechhhhHHHHHHHhcCcEEEEEEec--CCCccc
Q 012828 122 EANASAILIINNKT---ELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYS--PRRPVV 188 (455)
Q Consensus 122 ~aGA~avII~n~~~---~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~G~~V~v~l~~--p~~p~v 188 (455)
++||+|+||||+++ ....|... ...+||+++|++++|+.|+++|++|.+|++++.. .+.||+
T Consensus 127 ~aGA~avIIyNn~~~g~~~~~m~~~-----~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~~h~pw~ 193 (194)
T 3icu_A 127 ERGASGAVIFNFPGTRNEVIPMSHP-----GAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPWV 193 (194)
T ss_dssp HTTCSEEEEECCTTCTTCCCCCCCT-----TCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEEEECCCC
T ss_pred HCCCcEEEEEeCCCCCCceeeecCC-----CCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCCccCCCC
Confidence 99999999999852 35566532 2357999999999999999999999999998864 344554
No 2
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.74 E-value=4.6e-19 Score=172.20 Aligned_cols=116 Identities=28% Similarity=0.404 Sum_probs=79.9
Q ss_pred ccchhhhhhhhhhhhhcCccchhHhhHHHHHHHHHHH--HhcccCchhHHHHHHHHHHhhhhheeeeccccccceeEEEe
Q 012828 326 VCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVL--QIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVV 403 (455)
Q Consensus 326 ~~~~~~~~~~~w~~~~~~~~~W~l~nilg~~~~~~~i--~~i~l~~~k~~~ilL~~lf~YDif~VF~sp~~~~~sVMv~V 403 (455)
....++++++.++.+. +|+..|+.|+++|..+. -.+++..+ .+.+||+++.+||.+|||.|+ +|+++
T Consensus 107 a~~~a~~~~~ll~~yp----eWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~Tk------HMvtL 175 (301)
T 4hyg_A 107 TLIGAVAVTALLYLYP----EWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTK------HMITL 175 (301)
T ss_dssp HHHHHHHHHHHHHTCC----CSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHhcc----cHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCch------HHHHH
Confidence 3444666666666666 49999999999999875 45566888 999999999999999999655 89999
Q ss_pred ecCCCCCCCCCCEEEEeccccC-------------CCCceeeecccchhhhHHHHHHHHhhcCC
Q 012828 404 ARGDRSGEDGIPMLLKIPRLFD-------------PWGGYSVIGFGDIILPGLIVAFSLRSATV 454 (455)
Q Consensus 404 A~~~~~~~~~~P~~l~~P~~~~-------------~~~~~s~LGlGDIviPGl~i~~~~rfD~~ 454 (455)
|+|.- ..++|+++++|+..+ ..++..++|+||+++|+++++.+.|||.+
T Consensus 176 Aegvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~ 237 (301)
T 4hyg_A 176 AEGVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDA 237 (301)
T ss_dssp TTTC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHhhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHccc
Confidence 99942 257999999999432 13567899999999999999999999863
No 3
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=99.09 E-value=4e-10 Score=117.84 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=92.2
Q ss_pred CeEEEEeeeeecCCCcce--------EEeeecCCCCccccccCCceeEEEEecCCCCCCCCCC-CCCCCcEEEEecCCCC
Q 012828 42 NFVLVKVPTWVDGGEDTE--------YVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK-NKLTGEAILVHRGGCS 112 (455)
Q Consensus 42 ~f~lvkv~~wv~g~~~~~--------~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~-~~l~g~IaLV~RG~Ct 112 (455)
..+-+.++.|..|.+..+ +......+.+ .++.++++++|+.++..++|.... .+++|||||++||.|.
T Consensus 64 ~~q~f~~~~w~~~~~~~~~~~~~~~~~~~~~l~~s~---~tp~~~vta~lV~v~~~~~~~~~~~~dvkGKIVlv~~~~~~ 140 (444)
T 3iib_A 64 YKEPVTVPVWRRGIAKASILSPFPQPLVVTALGGSI---ATPAQGLSATIVRFDTLQDLQNAEAGSLNDKIAFIDAKTER 140 (444)
T ss_dssp EEEEEEEEEEEEEEEEEEEEESSCEEECEEECBTCC---CCCTTCEEEEEEEESSHHHHHTSCTTTTTTCEEEECCCCCC
T ss_pred EeeeEEeccEEecceEEEEeCCCCceEEEEeccCCC---CCCCCCeEEEEEecCCHHHHhhccccccCccEEEEeCCCCC
Confidence 344555667875543222 2222222332 233457899999987666676543 5899999999999995
Q ss_pred ---------HHHH----HHHHHHcCCcEEEEEcCCCcccccccCC--CCCCCcccceEEEechhhhHHHHHHHhcCcEEE
Q 012828 113 ---------FTAK----ANFAEEANASAILIINNKTELFKMVCES--NETDVDIRIPAIMLPQDAGANLEKLIKNNSVVS 177 (455)
Q Consensus 113 ---------F~~K----a~nAq~aGA~avII~n~~~~l~~m~~~~--~~~~~~i~IPvv~Is~~~G~~L~~~L~~G~~V~ 177 (455)
|..| +.+|+++||+|+|++|+.++...+.++. .......+||++.|++++|+.|++++++|++++
T Consensus 141 ~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~ 220 (444)
T 3iib_A 141 HRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVV 220 (444)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCE
T ss_pred CcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeE
Confidence 6777 4679999999999999865322221110 011234689999999999999999999887655
Q ss_pred EEEe
Q 012828 178 VQLY 181 (455)
Q Consensus 178 v~l~ 181 (455)
+++.
T Consensus 221 v~l~ 224 (444)
T 3iib_A 221 ISLE 224 (444)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 4
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.98 E-value=4.1e-09 Score=109.23 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=69.1
Q ss_pred CceeEEEEecCCCCCCCCCCC-CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEcCCCcccccccCCCCCCCcccceE
Q 012828 77 DASQNRLVLADPPDCCSKPKN-KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPA 155 (455)
Q Consensus 77 ~~~~~~Lv~~~p~daC~~~~~-~l~g~IaLV~RG~CtF~~Ka~nAq~aGA~avII~n~~~~l~~m~~~~~~~~~~i~IPv 155 (455)
.+.+++++.+... ..++.+. +++|||||++||+|+|.+|+++|+++||+|+|+||+.+......- .......||+
T Consensus 91 g~v~a~lv~~~~G-~~~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~---~~~~~~~IP~ 166 (421)
T 2ek8_A 91 SDVTAELVYVGLG-TTADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTL---GGSDASFVAA 166 (421)
T ss_dssp EEEEEEEEECTTC-CTTTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBC---SSCCTTCCEE
T ss_pred CCcceEEEECCCC-ChhhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCccccccc---CCCCCCCccE
Confidence 3567888776433 2233333 899999999999999999999999999999999998654322111 1113468999
Q ss_pred EEechhhhHHHHHHH
Q 012828 156 IMLPQDAGANLEKLI 170 (455)
Q Consensus 156 v~Is~~~G~~L~~~L 170 (455)
+.|++++++.|++.+
T Consensus 167 ~~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 167 VGITKQEGDALAANL 181 (421)
T ss_dssp EEECHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHh
Confidence 999999999999998
No 5
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.60 E-value=9.2e-08 Score=105.33 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=69.0
Q ss_pred CCceeEEEEecCCCCCCCC-C-------CCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEcCCCcc-------c--
Q 012828 76 KDASQNRLVLADPPDCCSK-P-------KNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL-------F-- 138 (455)
Q Consensus 76 ~~~~~~~Lv~~~p~daC~~-~-------~~~l~g~IaLV~RG~CtF~~Ka~nAq~aGA~avII~n~~~~l-------~-- 138 (455)
.+..++++|.++ .||.. . ..+++|||||++||+|+|.+|+++||++||+|+||||+..+. +
T Consensus 124 ~G~v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~ 201 (707)
T 3fed_A 124 QGMPEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPK 201 (707)
T ss_dssp CBCCEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTT
T ss_pred CCceEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCC
Confidence 345788999884 46632 1 237999999999999999999999999999999999973210 0
Q ss_pred ---------c------ccc-CCCCC-----------------CCcccceEEEechhhhHHHHHHHhc
Q 012828 139 ---------K------MVC-ESNET-----------------DVDIRIPAIMLPQDAGANLEKLIKN 172 (455)
Q Consensus 139 ---------~------m~~-~~~~~-----------------~~~i~IPvv~Is~~~G~~L~~~L~~ 172 (455)
. +.+ ++..+ ....+||++-|++++|+.|++.+..
T Consensus 202 ~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 202 GWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp SSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 0 000 00000 0135899999999999999998853
No 6
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.53 E-value=1.2e-07 Score=103.41 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=67.1
Q ss_pred CceeEEEEecCCCCCCCC-CC---CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEcCCCcc-c-----------cc
Q 012828 77 DASQNRLVLADPPDCCSK-PK---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL-F-----------KM 140 (455)
Q Consensus 77 ~~~~~~Lv~~~p~daC~~-~~---~~l~g~IaLV~RG~CtF~~Ka~nAq~aGA~avII~n~~~~l-~-----------~m 140 (455)
+..++++|.+. .||.. .+ .+++|||||++||+|+|.+|+++|+++||+|+||||+..+. . ..
T Consensus 106 g~v~g~lV~vg--~G~~~D~~~l~vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~ 183 (640)
T 3kas_A 106 ATVTGKLVHAN--FGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHL 183 (640)
T ss_dssp EEEEECEEECT--TCCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCS
T ss_pred CceEEEEEEec--CCChhhHHHhhcccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEecccccccccccccccccccc
Confidence 34678888874 45532 11 37999999999999999999999999999999999986421 0 00
Q ss_pred ccCCCC----------------CCCcccceEEEechhhhHHHHHHHh
Q 012828 141 VCESNE----------------TDVDIRIPAIMLPQDAGANLEKLIK 171 (455)
Q Consensus 141 ~~~~~~----------------~~~~i~IPvv~Is~~~G~~L~~~L~ 171 (455)
..++.. .....+||++-|++++|+.|.+.+.
T Consensus 184 ~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 184 GTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 000000 0112479999999999999998764
No 7
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=98.38 E-value=5.5e-07 Score=98.41 Aligned_cols=94 Identities=11% Similarity=0.177 Sum_probs=77.0
Q ss_pred eeEEEEecCCCCCCCCCC---CCC--CCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEcCCCcccccccCCCCCCCcccc
Q 012828 79 SQNRLVLADPPDCCSKPK---NKL--TGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRI 153 (455)
Q Consensus 79 ~~~~Lv~~~p~daC~~~~---~~l--~g~IaLV~RG~CtF~~Ka~nAq~aGA~avII~n~~~~l~~m~~~~~~~~~~i~I 153 (455)
...+++.....+.|.+.. ..+ +|||+|++||.|++.+|..+++++||.++|++|+.++.. .....+
T Consensus 257 ~~~plv~~~~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~---------~~~~~~ 327 (649)
T 3i6s_A 257 RDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVFR---------SATFPN 327 (649)
T ss_dssp EEEEEECCTTTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGGGGG---------CCCCCS
T ss_pred cceeeEecccccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCccccc---------cccCcC
Confidence 467888877888998753 334 999999999999999999999999999999999873321 122478
Q ss_pred eEEEechhhhHHHHHHHhcCcEEEEEEe
Q 012828 154 PAIMLPQDAGANLEKLIKNNSVVSVQLY 181 (455)
Q Consensus 154 Pvv~Is~~~G~~L~~~L~~G~~V~v~l~ 181 (455)
|+++|+.++|+.|++++++++..++++.
T Consensus 328 P~~~v~~~~g~~i~~yi~s~~~~~a~i~ 355 (649)
T 3i6s_A 328 PGVVVNKKEGKQVINYVKNSVTPTATIT 355 (649)
T ss_dssp CEEEECHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CEEEEcHHHHHHHHHHHhcCCCceEEEe
Confidence 9999999999999999998775555553
No 8
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=98.09 E-value=1.2e-05 Score=91.28 Aligned_cols=92 Identities=21% Similarity=0.322 Sum_probs=69.8
Q ss_pred eeEEEEecCCCCCCCCCC-CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEcCCCcccccccCCCCCCCcccceEEE
Q 012828 79 SQNRLVLADPPDCCSKPK-NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIM 157 (455)
Q Consensus 79 ~~~~Lv~~~p~daC~~~~-~~l~g~IaLV~RG~CtF~~Ka~nAq~aGA~avII~n~~~~l~~m~~~~~~~~~~i~IPvv~ 157 (455)
...+++.+. ++|.+.. .+++|||+|++||.|+|.+|+.+++++||.++|++|+..+...+.. .....+|+++
T Consensus 260 ~~~~lv~~~--~g~~~~~~~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~-----~~~~~iP~~~ 332 (926)
T 1xf1_A 260 KAYDYAYAN--RGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL-----PNVDQMPAAF 332 (926)
T ss_dssp CCEEEEECT--TSCSTTTTTTCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC-----CCSTTCCEEE
T ss_pred ceEEEEECC--CCCCccchhhcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc-----CccccccEEE
Confidence 346776653 5786543 5899999999999999999999999999999999998754222111 1235799999
Q ss_pred echhhhHHHHHHHhcCcEEEEEEe
Q 012828 158 LPQDAGANLEKLIKNNSVVSVQLY 181 (455)
Q Consensus 158 Is~~~G~~L~~~L~~G~~V~v~l~ 181 (455)
|++++|+.|++ +...++++.
T Consensus 333 i~~~~g~~l~~----~~~~ti~~~ 352 (926)
T 1xf1_A 333 ISRKDGLLLKD----NPQKTITFN 352 (926)
T ss_dssp ECHHHHHHHHH----CSSCEEEEC
T ss_pred EeHHHHHHHHh----CCceEEEec
Confidence 99999998874 455666654
No 9
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=98.03 E-value=9.7e-06 Score=84.35 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=65.2
Q ss_pred CCCCCCC-----CCCCCcEEEEecCCC-----CHHHHHHHHHHcCCcEEEEEcCCCcc--cccccCCCCCCCcccceEEE
Q 012828 90 DCCSKPK-----NKLTGEAILVHRGGC-----SFTAKANFAEEANASAILIINNKTEL--FKMVCESNETDVDIRIPAIM 157 (455)
Q Consensus 90 daC~~~~-----~~l~g~IaLV~RG~C-----tF~~Ka~nAq~aGA~avII~n~~~~l--~~m~~~~~~~~~~i~IPvv~ 157 (455)
+.|.+.+ .+++|||+|++||+| .+.+|+++++++||+++|+||+.+.. ...... +......+|+++
T Consensus 258 ~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~--~~~~~~~~p~~~ 335 (441)
T 1y9z_A 258 AECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLV--DANSDITVPSVS 335 (441)
T ss_dssp EEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEE--CTTCCCCSCEEE
T ss_pred hccccccccccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCcccccccccc--ccccCccccEEE
Confidence 4587542 579999999999987 89999999999999999999986421 100000 112345899999
Q ss_pred echhhhHHHHHHHhcCcEEEEEE
Q 012828 158 LPQDAGANLEKLIKNNSVVSVQL 180 (455)
Q Consensus 158 Is~~~G~~L~~~L~~G~~V~v~l 180 (455)
+++++|+.|++.+ +..+++..
T Consensus 336 v~~~~g~~l~~~~--~~~~t~~~ 356 (441)
T 1y9z_A 336 VDRATGLALKAKL--GQSTTVSN 356 (441)
T ss_dssp ECHHHHHHHHTTT--TSEEEEEE
T ss_pred EeHHHHHHHHHHh--cCCccccc
Confidence 9999999999887 44565543
No 10
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=91.68 E-value=0.21 Score=54.00 Aligned_cols=72 Identities=17% Similarity=0.290 Sum_probs=56.4
Q ss_pred CCCCCCC---CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEcCCCcccccccCCCCCCCcccceEEEechhhhHHH
Q 012828 90 DCCSKPK---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANL 166 (455)
Q Consensus 90 daC~~~~---~~l~g~IaLV~RG~CtF~~Ka~nAq~aGA~avII~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L 166 (455)
..|.+.. ..++|||++++|+ +..|..+++.+||.++|++|+..+. .....+|.+.++.++|..+
T Consensus 268 ~~~~~~~~~~~~v~gkivl~~~~---~~~~~~~~~~~Ga~gvi~~~~~~~~----------~~~~~lP~~~v~~~~g~~i 334 (621)
T 3vta_A 268 RFCTDKSVNPNLLKGKIVVCEAS---FGPHEFFKSLDGAAGVLMTSNTRDY----------ADSYPLPSSVLDPNDLLAT 334 (621)
T ss_dssp TTTCTTCSCGGGTTTSEEECSSC---CCHHHHHHHHTTCSEEEEECSCCSS----------CCCCSSSEEEECHHHHHHH
T ss_pred ccccccccccccccceEEEEecC---CChhHHhhhhcceeEEEEEecCCCc----------ccccccceEEECHHHHHHH
Confidence 4566544 4689999998754 6689999999999999999986542 1234689999999999999
Q ss_pred HHHHhcCc
Q 012828 167 EKLIKNNS 174 (455)
Q Consensus 167 ~~~L~~G~ 174 (455)
++.+....
T Consensus 335 ~~~~~~~~ 342 (621)
T 3vta_A 335 LRYIYSIR 342 (621)
T ss_dssp HHHHHHHS
T ss_pred HHHHhccC
Confidence 99887644
No 11
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=20.45 E-value=84 Score=27.35 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=41.7
Q ss_pred CCCCCcEEEEe--cCCCCHHHHHHHHHHcC-CcEEEEEcCCCcccccccCCCCCCCcccceEE-EechhhhHHHHHHHhc
Q 012828 97 NKLTGEAILVH--RGGCSFTAKANFAEEAN-ASAILIINNKTELFKMVCESNETDVDIRIPAI-MLPQDAGANLEKLIKN 172 (455)
Q Consensus 97 ~~l~g~IaLV~--RG~CtF~~Ka~nAq~aG-A~avII~n~~~~l~~m~~~~~~~~~~i~IPvv-~Is~~~G~~L~~~L~~ 172 (455)
.+++|||.+.. ||.|+=.-=...+...| |-+.||....+......+- --.||++ -+..+ ..+.++.
T Consensus 47 ~siagkILv~P~gkGSt~gS~vl~~l~~~g~aPaAiI~~~~e~Il~~Gai------va~IP~vd~~~~d----~~~~i~~ 116 (141)
T 2hi6_A 47 ESVAGRILVFPGGKGSTVGSYVLLNLRKNGVAPKAIINKKTETIIAVGAA------MAEIPLVEVRDEK----FFEAVKT 116 (141)
T ss_dssp CBCTTSEEEESCCSCCSSCTTHHHHHHHHTCSCSEEEESSCCHHHHHHHH------HHTCCEEECCCTH----HHHHCCT
T ss_pred CcccCeEEEecCCCCccHHHHHHHHHHHCCCCCeEEEecCcchhhhhhhh------eeCCceEeccChh----HHHHhcC
Confidence 47999999987 78886544444444333 3345555554443322210 0148987 33332 3456677
Q ss_pred CcEEEEEE
Q 012828 173 NSVVSVQL 180 (455)
Q Consensus 173 G~~V~v~l 180 (455)
|..|++.-
T Consensus 117 G~~v~vd~ 124 (141)
T 2hi6_A 117 GDRVVVNA 124 (141)
T ss_dssp TSEEEEET
T ss_pred CCEEEEeC
Confidence 88877653
Done!