BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012829
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 110/442 (24%), Positives = 197/442 (44%), Gaps = 42/442 (9%)
Query: 4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
FHV G+++ S Y CV C+ CFA L KC C+ +YC CQK DW L
Sbjct: 27 FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85
Query: 63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMS 122
H+LEC + L + S T + + T ++ V +H+
Sbjct: 86 HKLECSSMVVLGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVREFESHLD 139
Query: 123 DID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
+D EK+ L+ + IA L L++P+ S + F+++ CN TI + EL LG+
Sbjct: 140 KLDNEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSA 197
Query: 179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238
++P ++++NHSC PN ++ ++G LA VRAVQ + G EV SYI+ T R L++
Sbjct: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDS 257
Query: 239 YLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKE 298
Y FTC C C +D D ++ E
Sbjct: 258 YFFTCECRECTT----------------------------KDKDKAKVEVRKLSSPPQAE 289
Query: 299 EIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI 358
I+ + + ++ + E++ ++ ++ ++ +V ++ + + +
Sbjct: 290 AIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGV 349
Query: 359 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 418
+ ++DW+ AL Y Q I Y + YP + + + G+L L + K++ +A+
Sbjct: 350 CLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409
Query: 419 EILRITHGTNSPFMKELILKLE 440
I+ + HG + P++ E+ ++E
Sbjct: 410 AIMEVAHGKDHPYISEIKQEIE 431
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/436 (24%), Positives = 191/436 (43%), Gaps = 37/436 (8%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
G+++ S Y V + + C+ CF L KC C+ +YC CQK DW +H+LE
Sbjct: 30 GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
C + + S T + + T ++ V+ +H+ +D
Sbjct: 90 CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
EK+ L+ + IA L + + E N+ + F+++ CN TI + EL LG+ ++P ++
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVA 203
Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCT 244
++NHSC PN ++ ++G LA VRAVQ + G EV SYI+ T R L++ Y FTC
Sbjct: 204 LMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCE 263
Query: 245 CPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIA 304
C C KD + +R D +VR + +
Sbjct: 264 CQECT------------------TKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEEF 305
Query: 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED 364
+ L C QE +S+ ++ +V ++ + + + + ++D
Sbjct: 306 RRAKHYKSPSELLEICELSQEKMSS----------VFEDSNVYMLHMMYQAMGVCLYMQD 355
Query: 365 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424
W+ AL Y Q I Y + YP + + + G+L L K++ +A+ I+ +
Sbjct: 356 WEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVA 415
Query: 425 HGTNSPFMKELILKLE 440
HG + P++ E+ ++E
Sbjct: 416 HGKDHPYISEIKQEIE 431
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/438 (24%), Positives = 192/438 (43%), Gaps = 41/438 (9%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
G+++ S Y V + + C+ CF L KC C+ +YC CQK DW +H+LE
Sbjct: 30 GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
C + + S T + + T ++ V+ +H+ +D
Sbjct: 90 CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
EK+ L+ + IA L + L +P+ + + F+++ CN TI + EL LG+ ++P
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPD 201
Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 242
++++NHSC PN ++ ++G LA VRAVQ + G EV SYI+ T R L++ Y FT
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 243 CTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKK 302
C C C KD + +R D +VR + +
Sbjct: 262 CECQECT------------------TKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIE 303
Query: 303 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL 362
+ L C QE +S+ ++ +V ++ + + + + +
Sbjct: 304 EFRRAKHYKSPSELLEICELSQEKMSS----------VFEDSNVYMLHMMYQAMGVCLYM 353
Query: 363 EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422
+DW+ AL Y Q I Y + YP + + + G+L L K++ +A+ I+
Sbjct: 354 QDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIME 413
Query: 423 ITHGTNSPFMKELILKLE 440
+ HG + P++ E+ ++E
Sbjct: 414 VAHGKDHPYISEIKQEIE 431
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/438 (24%), Positives = 192/438 (43%), Gaps = 41/438 (9%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
G+++ S Y V + + C+ CF L KC C+ +YC CQK DW +H+LE
Sbjct: 30 GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
C + + S T + + T ++ V+ +H+ +D
Sbjct: 90 CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
EK+ L+ + IA L + L +P+ + + F+++ CN TI + EL LG+ ++P
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPD 201
Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 242
++++NHSC PN ++ ++G LA VRAVQ + G EV SYI+ T R L++ Y FT
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 243 CTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKK 302
C C C KD + +R D +VR + +
Sbjct: 262 CECQECT------------------TKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIE 303
Query: 303 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL 362
+ L C QE +S+ ++ +V ++ + + + + +
Sbjct: 304 EFRRAKHYKSPSELLEICELSQEKMSS----------VFEDSNVYMLHMMYQAMGVCLYM 353
Query: 363 EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422
+DW+ AL Y Q I Y + YP + + + G+L L K++ +A+ I+
Sbjct: 354 QDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIME 413
Query: 423 ITHGTNSPFMKELILKLE 440
+ HG + P++ E+ ++E
Sbjct: 414 VAHGKDHPYISEIKQEIE 431
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 194/431 (45%), Gaps = 64/431 (14%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 63 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 122
Query: 67 CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 123 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 173
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 174 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 231
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
GLYP IS++NHSC PN +VF G ++RAV+ + G E+ I Y++ ++ R+K L++
Sbjct: 232 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 291
Query: 238 QYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 297
QY F C C RC +D D T + +
Sbjct: 292 QYCFECDCFRC----------------------------QTQDKDADMLTGDEQVWKEVQ 323
Query: 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKL 355
E +KKI E+ K L C Q ++S+ E+L +N+ Q + +
Sbjct: 324 ESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDCA 370
Query: 356 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415
+ + L +EAL Y T+ Y+ +P HP+ G+Q GKL+ G A+K++
Sbjct: 371 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 430
Query: 416 EAVEILRITHG 426
A +I+R+THG
Sbjct: 431 LAFDIMRVTHG 441
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 194/431 (45%), Gaps = 64/431 (14%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 29 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 88
Query: 67 CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 89 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 139
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 140 EDKKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 197
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
GLYP IS++NHSC PN +VF G ++RAV+ + G E+ I Y++ ++ R+K L++
Sbjct: 198 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 257
Query: 238 QYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 297
QY F C C RC +D D T + +
Sbjct: 258 QYCFECDCFRC----------------------------QTQDKDADMLTGDEQVWKEVQ 289
Query: 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKL 355
E +KKI E+ K L C Q ++S+ E+L +N+ Q + +
Sbjct: 290 ESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDCA 336
Query: 356 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415
+ + L +EAL Y T+ Y+ +P HP+ G+Q GKL+ G A+K++
Sbjct: 337 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 396
Query: 416 EAVEILRITHG 426
A +I+R+THG
Sbjct: 397 LAFDIMRVTHG 407
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 194/431 (45%), Gaps = 64/431 (14%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 27 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67 CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 87 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 137
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 138 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 195
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
GLYP IS++NHSC PN +VF G ++RAV+ + G E+ I Y++ ++ R+K L++
Sbjct: 196 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 255
Query: 238 QYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 297
QY F C C RC +D D T + +
Sbjct: 256 QYCFECDCFRC----------------------------QTQDKDADMLTGDEQVWKEVQ 287
Query: 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKL 355
E +KKI E+ K L C Q ++S+ E+L +N+ Q + +
Sbjct: 288 ESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDCA 334
Query: 356 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415
+ + L +EAL Y T+ Y+ +P HP+ G+Q GKL+ G A+K++
Sbjct: 335 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 394
Query: 416 EAVEILRITHG 426
A +I+R+THG
Sbjct: 395 LAFDIMRVTHG 405
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 194/431 (45%), Gaps = 64/431 (14%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 27 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67 CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 87 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 137
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 138 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 195
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
GLYP IS++NHSC PN +VF G ++RAV+ + G E+ I Y++ ++ R+K L++
Sbjct: 196 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 255
Query: 238 QYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 297
QY F C C RC +D D T + +
Sbjct: 256 QYCFECDCFRC----------------------------QTQDKDADMLTGDEQVWKEVQ 287
Query: 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKL 355
E +KKI E+ K L C Q ++S+ E+L +N+ Q + +
Sbjct: 288 ESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDCA 334
Query: 356 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415
+ + L +EAL Y T+ Y+ +P HP+ G+Q GKL+ G A+K++
Sbjct: 335 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 394
Query: 416 EAVEILRITHG 426
A +I+R+THG
Sbjct: 395 LAFDIMRVTHG 405
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 194/431 (45%), Gaps = 64/431 (14%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 28 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 87
Query: 67 CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 88 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 138
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 139 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 196
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
GLYP IS++NHSC PN +VF G ++RAV+ + G E+ I Y++ ++ R+K L++
Sbjct: 197 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 256
Query: 238 QYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 297
QY F C C RC +D D T + +
Sbjct: 257 QYCFECDCFRC----------------------------QTQDKDADMLTGDEQVWKEVQ 288
Query: 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKL 355
E +KKI E+ K L C Q ++S+ E+L +N+ Q + +
Sbjct: 289 ESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDCA 335
Query: 356 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415
+ + L +EAL Y T+ Y+ +P HP+ G+Q GKL+ G A+K++
Sbjct: 336 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 395
Query: 416 EAVEILRITHG 426
A +I+R+THG
Sbjct: 396 LAFDIMRVTHG 406
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 118/432 (27%), Positives = 185/432 (42%), Gaps = 66/432 (15%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 28 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLXRCSQCRVAKYCSAKCQKKAWPDHKRE 87
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXX-QNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 88 CKCL--------KSCKPRYPPDSVRLLGRVVFKLXDGAPSESEKLYSFYD-LESNINKLT 138
Query: 126 EKQLLLYAQIANLVNLILQWPEISINEIA---------ENFSKLACNAHTICNSELRPLG 176
E + + LV + I + + E F+K+ CN+ TICN+E + +G
Sbjct: 139 EDR---KEGLRQLVXTFQHFXREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEXQEVG 195
Query: 177 TGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALK 236
GLYP IS++NHSC PN +VF G ++RAV+ + G E+ I Y++ ++ R+K L+
Sbjct: 196 VGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQLR 255
Query: 237 EQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 296
+QY F C C RC +D D T +
Sbjct: 256 DQYCFECDCFRC----------------------------QTQDKDADXLTGDEQVWKEV 287
Query: 297 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EK 354
+E +KKI E+ K L C Q ++S+ E+L +N+ Q + +
Sbjct: 288 QESLKKI-EELKAHWKWEQVLAXC---QAIISSNS--ERLP-------DINIYQLKVLDC 334
Query: 355 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 414
+ L +EAL Y T Y+ +P HP+ G+Q GKL+ G A K++
Sbjct: 335 AXDACINLGLLEEALFYGTRTXEPYRIFFPGSHPVRGVQVXKVGKLQLHQGXFPQAXKNL 394
Query: 415 TEAVEILRITHG 426
A +I R+THG
Sbjct: 395 RLAFDIXRVTHG 406
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/448 (22%), Positives = 188/448 (41%), Gaps = 58/448 (12%)
Query: 7 SGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRL 65
+ +VI ++ Y V +S C CF L +C C+ YC CQK W H+
Sbjct: 29 AADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKN 88
Query: 66 ECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
EC + + K +++ + + + S ++ V H + +
Sbjct: 89 ECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDD-----LQNHVEHFGEEE 143
Query: 126 EKQLLLYAQIANLVNLILQWP----EISINEIAENFSKLACNAHTICNSE-LRPLGTGLY 180
+K+L + ++ + WP + S+ I+ F + CN T+ + L+ +G G++
Sbjct: 144 QKELRV-----DVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIF 198
Query: 181 PVISIINHSCLPNAVLVFE-GRLAVVRAVQH------------VPKGAEVLISYIETAGS 227
P + ++NH C PN ++F G V+++ H + +G E+ +SYI+
Sbjct: 199 PNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHL 258
Query: 228 TMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFT 287
+ R++ LK+QY F C+C C K G DD+ FL D K
Sbjct: 259 SEERRRQLKKQYYFDCSCEHCQK-GLKDDL------------------FLAAKEDPKP-- 297
Query: 288 CQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN 347
S+E +K++ +K S G + EVV + + Q+ ++ ++
Sbjct: 298 --------SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLY 349
Query: 348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDT 407
+++ ++L L+ ++EA Y + + Y ++Y + LG+ G W G
Sbjct: 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI 409
Query: 408 ENAIKSMTEAVEILRITHGTNSPFMKEL 435
E + +A IL +THG + P K+L
Sbjct: 410 EVGHGMICKAYAILLVTHGPSHPITKDL 437
>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc
Finger Mynd Domain-Containing Protein 10
Length = 70
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEK 77
RC C A ++ K+CS CQ WYC CQ W+ H C + ++ D+ K
Sbjct: 17 RCAYCSAEAS-KRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQGDRAK 64
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 39 LKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
+ +C+ C V YC + CQ+ DWK H+ C
Sbjct: 20 MSECTGCHKVNYCSTFCQRKDWKDHQHIC 48
>pdb|4A24|A Chain A, Structural And Functional Analysis Of The Deaf-1 And
Bs69 Mynd Domains
Length = 47
Score = 32.7 bits (73), Expect = 0.45, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 39 LKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
+ +C+ C V YC + CQ+ DWK H+ C
Sbjct: 15 MSECTGCHKVNYCSTFCQRKDWKDHQHIC 43
>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain
(Leu384-Cys430) Of Human Zinc Finger Mynd Domain
Containing Protein 10
Length = 60
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS 71
RC C A ++ K+CS CQ WYC CQ W+ H C S
Sbjct: 17 RCAYCSAEAS-KRCSRCQNEWYCCRECQVKHWEKHGKTCSGPS 58
>pdb|2OD1|A Chain A, Solution Structure Of The Mynd Domain From Human
Aml1-Eto
Length = 60
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 16 PYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
P PN+ SS S C C ++ + CS C YCGS CQ DW+ H C
Sbjct: 3 PNSGSPNSDSSES-CWNCGRKAS-ETCSGCNTARYCGSFCQHKDWEKHHHIC 52
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 184 SIINHSCLPNAVLVFEGR-LAVVRAVQHVPKGAEVLISY 221
+ INH C PN V GR A V+A++ + G E+ Y
Sbjct: 207 AFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYY 245
>pdb|2DJ8|A Chain A, Solution Structure Of Zf-Mynd Domain Of Protein Cbfa2ti
(Protein Mtg8)
Length = 60
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 42 CSACQVVWYCGSNCQKLDWKLHRLECQVLS 71
CS C YCGS CQ DW+ H C S
Sbjct: 29 CSGCNTARYCGSFCQHKDWEKHHHICSGPS 58
>pdb|2ODD|A Chain A, Solution Structure Of The Mynd Domain From Aml1-Eto
Complexed With Smrt, A Corepressor
Length = 64
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 42 CSACQVVWYCGSNCQKLDWKLHRLEC 67
CS C YCGS CQ DW+ H C
Sbjct: 31 CSGCNTARYCGSFCQHKDWEKHHHIC 56
>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310
pdb|3QXY|B Chain B, Human Setd6 In Complex With Rela Lys310
pdb|3RC0|A Chain A, Human Setd6 In Complex With Rela Lys310 Peptide
pdb|3RC0|B Chain B, Human Setd6 In Complex With Rela Lys310 Peptide
Length = 449
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238
+ P I+NH NA L + + A Q +PKG E+ +Y + A + E
Sbjct: 219 MVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEP 278
Query: 239 Y 239
Y
Sbjct: 279 Y 279
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 29/152 (19%)
Query: 126 EKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISI 185
E+ + L A++ + N L+ I +N E KL N I S G Y +
Sbjct: 171 ERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISES-----GINTYAQVRE 225
Query: 186 INHSC----LPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQY-- 239
++H + +A++ + A VR VL+ + G +TR + K Y
Sbjct: 226 LSHFANGFLIGSALMAHDDLHAAVR---------RVLLGENKVCG--LTRGQDAKAAYDA 274
Query: 240 -------LFTCTCPRCIKLGQFDDIQESAILE 264
+F T PRC+ + Q ++ +A L+
Sbjct: 275 GAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQ 306
>pdb|3VMN|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
pdb|3VMO|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
In Complex With Isomaltotriose
pdb|3VMP|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
In Complex With 4,5-Epoxypentyl Alpha-D-Glucopyranoside
Length = 643
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 131 LYAQIANLVNLILQWPEISINEI-AENFSKLACNAHTICNSELRPLGT---GLYPVISII 186
+YA+ N + L +++N++ EN SKLA + + +EL P GT G P S
Sbjct: 315 VYAEFLNKMKEKLPQYYLTLNDVNGENISKLANSKQDVIYNELWPFGTSALGNRPQESYG 374
Query: 187 NHSCLPNAVLVFEGRLAVVRAVQHVPK 213
+ + V G+ +V A PK
Sbjct: 375 DLKARVDQVRQATGKSLIVGAYMEEPK 401
>pdb|3RQ4|A Chain A, Crystal Structure Of Suppressor Of Variegation 4-20
Homolog 2
Length = 247
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 184 SIINHSCLPNAVLV-FEGRLAVVRAVQHVPKGAEVLISYIE 223
+ INH C PN V +G A V+ ++ + G EV Y E
Sbjct: 178 AFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGE 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,356,411
Number of Sequences: 62578
Number of extensions: 469856
Number of successful extensions: 1092
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 45
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)