Query 012829
Match_columns 455
No_of_seqs 246 out of 2788
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2084 Predicted histone tail 99.9 1.2E-24 2.7E-29 224.0 27.2 419 3-450 32-475 (482)
2 KOG1840 Kinesin light chain [C 99.5 2.7E-13 5.9E-18 136.3 16.1 130 313-442 205-334 (508)
3 KOG1840 Kinesin light chain [C 99.5 5.7E-13 1.2E-17 134.0 16.3 136 313-448 247-382 (508)
4 PF00856 SET: SET domain; Int 99.4 1.4E-12 3E-17 113.2 8.8 53 170-222 106-162 (162)
5 PF13424 TPR_12: Tetratricopep 99.3 1.8E-11 3.9E-16 92.9 7.8 78 345-423 1-78 (78)
6 smart00317 SET SET (Su(var)3-9 99.1 5E-11 1.1E-15 97.7 4.0 46 176-221 67-116 (116)
7 PF01753 zf-MYND: MYND finger; 98.9 2E-10 4.3E-15 73.1 0.9 37 30-67 1-37 (37)
8 KOG2589 Histone tail methylase 98.8 3.1E-09 6.7E-14 98.9 5.0 80 161-251 175-256 (453)
9 CHL00033 ycf3 photosystem I as 98.8 1.4E-07 3E-12 82.9 13.0 128 306-439 34-161 (168)
10 TIGR02795 tol_pal_ybgF tol-pal 98.6 8.1E-07 1.7E-11 72.6 12.0 115 308-437 3-117 (119)
11 PRK15363 pathogenicity island 98.5 8.6E-06 1.9E-10 69.1 15.7 121 305-446 33-153 (157)
12 PRK15359 type III secretion sy 98.5 5.2E-06 1.1E-10 70.8 14.5 116 309-445 26-141 (144)
13 PF13424 TPR_12: Tetratricopep 98.5 1.2E-06 2.6E-11 66.1 8.6 73 308-381 6-78 (78)
14 PF13374 TPR_10: Tetratricopep 98.4 2.4E-07 5.2E-12 60.7 4.1 42 390-431 1-42 (42)
15 KOG0553 TPR repeat-containing 98.4 4.9E-06 1.1E-10 76.9 13.5 120 305-445 79-198 (304)
16 KOG1839 Uncharacterized protei 98.4 1.6E-06 3.5E-11 93.9 10.5 130 314-444 939-1068(1236)
17 PRK02603 photosystem I assembl 98.4 5.5E-06 1.2E-10 73.0 11.7 131 306-442 34-164 (172)
18 PLN03088 SGT1, suppressor of 98.3 1.3E-05 2.9E-10 79.0 14.4 113 310-443 5-117 (356)
19 PRK10803 tol-pal system protei 98.3 1.6E-05 3.5E-10 74.6 14.0 108 318-440 154-261 (263)
20 PRK10866 outer membrane biogen 98.2 4.4E-05 9.6E-10 71.0 15.5 129 309-449 34-177 (243)
21 PF09986 DUF2225: Uncharacteri 98.2 2.2E-05 4.7E-10 71.3 12.8 137 284-422 47-196 (214)
22 PF13374 TPR_10: Tetratricopep 98.2 2E-06 4.4E-11 56.2 4.4 42 348-389 1-42 (42)
23 TIGR02552 LcrH_SycD type III s 98.2 4.6E-05 9.9E-10 63.9 13.7 112 310-442 20-131 (135)
24 KOG4626 O-linked N-acetylgluco 98.2 1E-05 2.2E-10 81.2 10.4 95 311-421 324-418 (966)
25 PF13525 YfiO: Outer membrane 98.1 0.00014 3E-09 65.9 16.3 131 307-449 5-143 (203)
26 TIGR03302 OM_YfiO outer membra 98.0 7.5E-05 1.6E-09 69.2 12.6 117 308-439 34-158 (235)
27 KOG4626 O-linked N-acetylgluco 98.0 5.5E-05 1.2E-09 76.1 11.3 114 306-443 353-466 (966)
28 COG2940 Proteins containing SE 98.0 3.4E-06 7.4E-11 86.5 2.9 71 181-251 404-478 (480)
29 PF13512 TPR_18: Tetratricopep 98.0 0.00017 3.6E-09 60.2 11.9 115 308-437 11-140 (142)
30 PF09976 TPR_21: Tetratricopep 97.9 0.0002 4.3E-09 61.1 11.9 94 311-418 52-145 (145)
31 PF12895 Apc3: Anaphase-promot 97.9 7.5E-05 1.6E-09 57.2 8.3 83 320-417 2-84 (84)
32 KOG1080 Histone H3 (Lys4) meth 97.9 9.5E-06 2.1E-10 87.7 4.0 43 182-224 939-985 (1005)
33 KOG4442 Clathrin coat binding 97.9 9.6E-06 2.1E-10 82.3 3.7 43 183-225 194-240 (729)
34 PF13414 TPR_11: TPR repeat; P 97.9 7.9E-05 1.7E-09 54.5 7.7 64 349-420 3-67 (69)
35 PF12688 TPR_5: Tetratrico pep 97.9 0.00037 8E-09 57.0 12.2 101 309-419 3-103 (120)
36 COG1729 Uncharacterized protei 97.8 0.00015 3.2E-09 66.8 10.5 100 310-419 144-243 (262)
37 COG3063 PilF Tfp pilus assembl 97.8 0.00021 4.5E-09 63.9 10.9 95 309-419 37-131 (250)
38 KOG1710 MYND Zn-finger and ank 97.8 8.3E-06 1.8E-10 74.3 1.3 44 27-70 319-362 (396)
39 PF13432 TPR_16: Tetratricopep 97.8 0.00013 2.9E-09 52.6 7.4 59 354-420 2-60 (65)
40 TIGR02521 type_IV_pilW type IV 97.7 0.00091 2E-08 60.7 13.8 92 312-419 36-127 (234)
41 PF14938 SNAP: Soluble NSF att 97.7 0.0013 2.9E-08 62.7 15.2 127 314-447 42-169 (282)
42 PRK11189 lipoprotein NlpI; Pro 97.6 0.00058 1.2E-08 65.7 12.0 102 308-430 65-166 (296)
43 PF09976 TPR_21: Tetratricopep 97.6 0.0046 9.9E-08 52.6 16.2 102 305-416 9-110 (145)
44 TIGR02521 type_IV_pilW type IV 97.6 0.0019 4.1E-08 58.6 14.3 94 313-420 105-198 (234)
45 cd00189 TPR Tetratricopeptide 97.6 0.00059 1.3E-08 51.7 9.4 93 312-420 5-97 (100)
46 KOG1839 Uncharacterized protei 97.6 0.00061 1.3E-08 74.5 11.9 119 322-440 1030-1148(1236)
47 PF13371 TPR_9: Tetratricopept 97.6 0.00025 5.4E-09 52.4 6.4 72 355-439 1-72 (73)
48 PF03704 BTAD: Bacterial trans 97.5 0.0027 5.8E-08 54.0 13.6 126 306-439 5-145 (146)
49 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00041 8.9E-09 68.5 9.0 72 344-420 70-141 (453)
50 PRK10370 formate-dependent nit 97.5 0.0027 5.8E-08 57.2 13.7 95 311-421 77-174 (198)
51 TIGR03302 OM_YfiO outer membra 97.5 0.0031 6.7E-08 58.3 14.1 122 310-446 73-216 (235)
52 KOG0543 FKBP-type peptidyl-pro 97.5 0.0048 1E-07 59.9 15.2 109 304-420 205-320 (397)
53 TIGR00990 3a0801s09 mitochondr 97.4 0.0019 4.1E-08 68.9 13.8 93 311-419 369-461 (615)
54 COG4105 ComL DNA uptake lipopr 97.4 0.0063 1.4E-07 55.7 15.0 130 308-449 35-169 (254)
55 PRK09782 bacteriophage N4 rece 97.4 0.0021 4.6E-08 71.3 14.3 111 311-442 613-723 (987)
56 CHL00033 ycf3 photosystem I as 97.4 0.00099 2.1E-08 58.3 9.4 69 348-421 34-102 (168)
57 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0015 3.2E-08 53.0 9.7 86 350-445 3-88 (119)
58 TIGR00990 3a0801s09 mitochondr 97.4 0.0023 4.9E-08 68.3 13.4 94 311-420 335-428 (615)
59 PRK15331 chaperone protein Sic 97.4 0.0053 1.2E-07 52.5 12.6 116 305-442 35-151 (165)
60 PRK15174 Vi polysaccharide exp 97.3 0.0037 8E-08 67.0 14.5 119 309-446 286-404 (656)
61 PRK15179 Vi polysaccharide bio 97.3 0.0031 6.7E-08 67.3 13.6 92 311-418 90-181 (694)
62 PRK15179 Vi polysaccharide bio 97.3 0.004 8.6E-08 66.5 14.4 114 309-442 122-235 (694)
63 PRK11788 tetratricopeptide rep 97.3 0.0046 9.9E-08 61.7 14.2 99 309-420 37-136 (389)
64 PRK02603 photosystem I assembl 97.3 0.0024 5.1E-08 56.1 10.6 71 345-420 31-101 (172)
65 PF14938 SNAP: Soluble NSF att 97.2 0.0042 9E-08 59.3 12.0 104 314-421 81-185 (282)
66 PRK11788 tetratricopeptide rep 97.2 0.0077 1.7E-07 60.1 14.4 61 351-419 182-242 (389)
67 PF14559 TPR_19: Tetratricopep 97.2 0.00069 1.5E-08 49.3 5.0 66 360-438 2-67 (68)
68 PF13432 TPR_16: Tetratricopep 97.1 0.0017 3.7E-08 46.7 6.5 59 313-379 3-61 (65)
69 KOG1082 Histone H3 (Lys9) meth 97.0 0.00038 8.3E-09 68.8 3.0 44 183-226 273-324 (364)
70 PRK04841 transcriptional regul 97.0 0.0083 1.8E-07 67.0 13.7 110 313-424 497-606 (903)
71 PF13414 TPR_11: TPR repeat; P 97.0 0.0051 1.1E-07 44.7 8.1 63 308-378 4-67 (69)
72 KOG4234 TPR repeat-containing 97.0 0.014 2.9E-07 51.4 11.6 107 302-420 90-197 (271)
73 PRK15174 Vi polysaccharide exp 97.0 0.0099 2.1E-07 63.8 13.3 94 311-420 250-347 (656)
74 TIGR02917 PEP_TPR_lipo putativ 97.0 0.0072 1.6E-07 66.6 12.6 103 310-420 25-154 (899)
75 cd05804 StaR_like StaR_like; a 97.0 0.0065 1.4E-07 59.8 11.0 94 313-419 120-214 (355)
76 PF13824 zf-Mss51: Zinc-finger 96.9 0.0015 3.3E-08 44.5 4.0 46 29-74 1-49 (55)
77 PRK12370 invasion protein regu 96.9 0.014 3E-07 61.4 13.1 91 313-419 344-434 (553)
78 COG3063 PilF Tfp pilus assembl 96.9 0.015 3.2E-07 52.3 10.9 95 313-421 75-169 (250)
79 PRK09782 bacteriophage N4 rece 96.8 0.015 3.3E-07 64.6 13.6 94 319-434 588-681 (987)
80 KOG1337 N-methyltransferase [G 96.8 0.0014 3E-08 67.3 5.2 88 149-242 198-291 (472)
81 KOG1173 Anaphase-promoting com 96.8 0.015 3.2E-07 58.6 12.0 112 312-437 419-530 (611)
82 PRK10803 tol-pal system protei 96.8 0.045 9.7E-07 51.5 14.7 86 351-446 144-230 (263)
83 PRK12370 invasion protein regu 96.8 0.0055 1.2E-07 64.4 9.2 84 321-420 318-401 (553)
84 KOG1125 TPR repeat-containing 96.8 0.0021 4.5E-08 64.7 5.5 96 317-428 440-535 (579)
85 COG2956 Predicted N-acetylgluc 96.8 0.032 7E-07 52.6 12.9 129 309-448 109-264 (389)
86 PF12688 TPR_5: Tetratrico pep 96.7 0.025 5.4E-07 46.3 10.5 64 351-419 3-66 (120)
87 PRK11447 cellulose synthase su 96.6 0.0095 2E-07 68.3 10.5 99 314-420 276-414 (1157)
88 COG5010 TadD Flp pilus assembl 96.6 0.018 3.9E-07 52.7 10.0 91 313-419 106-196 (257)
89 PRK10370 formate-dependent nit 96.6 0.036 7.8E-07 49.9 12.1 95 321-436 53-150 (198)
90 PF13429 TPR_15: Tetratricopep 96.6 0.018 4E-07 54.8 10.3 105 311-436 150-254 (280)
91 PF14559 TPR_19: Tetratricopep 96.5 0.015 3.2E-07 42.1 7.0 54 318-379 2-55 (68)
92 KOG1141 Predicted histone meth 96.4 0.0017 3.7E-08 67.3 2.2 43 183-225 1190-1240(1262)
93 PRK15359 type III secretion sy 96.4 0.017 3.6E-07 49.1 8.0 67 354-433 29-95 (144)
94 PRK10049 pgaA outer membrane p 96.3 0.034 7.3E-07 60.9 11.7 94 310-420 52-145 (765)
95 PRK04841 transcriptional regul 96.2 0.063 1.4E-06 60.0 13.8 111 311-424 535-645 (903)
96 TIGR02917 PEP_TPR_lipo putativ 96.2 0.061 1.3E-06 59.3 13.4 28 350-377 771-798 (899)
97 KOG1083 Putative transcription 96.2 0.0036 7.9E-08 66.7 3.4 40 183-222 1251-1294(1306)
98 COG2956 Predicted N-acetylgluc 96.2 0.048 1E-06 51.5 10.3 96 310-420 183-278 (389)
99 PRK11447 cellulose synthase su 96.2 0.031 6.7E-07 64.1 11.2 91 313-419 609-699 (1157)
100 PRK14574 hmsH outer membrane p 96.2 0.039 8.4E-07 60.3 11.3 92 312-419 39-130 (822)
101 KOG2002 TPR-containing nuclear 96.2 0.016 3.4E-07 61.9 7.8 92 314-419 653-744 (1018)
102 PRK11189 lipoprotein NlpI; Pro 96.2 0.083 1.8E-06 50.8 12.4 95 309-420 100-194 (296)
103 KOG1126 DNA-binding cell divis 96.1 0.0042 9.2E-08 63.5 3.4 65 347-419 487-551 (638)
104 PF13176 TPR_7: Tetratricopept 96.1 0.0097 2.1E-07 37.3 3.9 31 393-423 1-31 (36)
105 KOG2003 TPR repeat-containing 96.1 0.031 6.7E-07 54.8 9.1 109 311-443 494-602 (840)
106 KOG1130 Predicted G-alpha GTPa 96.1 0.13 2.8E-06 50.1 13.1 127 319-451 247-373 (639)
107 cd00189 TPR Tetratricopeptide 96.1 0.051 1.1E-06 40.6 8.8 62 352-421 3-64 (100)
108 KOG1085 Predicted methyltransf 96.1 0.0031 6.7E-08 57.6 2.1 45 183-227 334-382 (392)
109 KOG1173 Anaphase-promoting com 96.1 0.028 6.1E-07 56.6 8.8 119 316-451 355-473 (611)
110 PF00515 TPR_1: Tetratricopept 96.1 0.012 2.7E-07 36.0 4.1 31 391-421 1-31 (34)
111 PF13429 TPR_15: Tetratricopep 96.0 0.022 4.8E-07 54.2 7.7 94 313-422 186-279 (280)
112 KOG0548 Molecular co-chaperone 96.0 0.11 2.3E-06 52.3 12.3 111 311-445 362-472 (539)
113 KOG2376 Signal recognition par 96.0 0.15 3.2E-06 52.0 13.2 127 311-448 83-232 (652)
114 KOG1129 TPR repeat-containing 95.9 0.013 2.9E-07 55.1 5.4 94 313-422 296-389 (478)
115 TIGR02552 LcrH_SycD type III s 95.9 0.046 9.9E-07 45.4 8.3 64 349-420 17-80 (135)
116 PF07719 TPR_2: Tetratricopept 95.9 0.016 3.5E-07 35.3 4.1 30 392-421 2-31 (34)
117 PRK10049 pgaA outer membrane p 95.9 0.13 2.8E-06 56.4 13.8 108 312-440 364-471 (765)
118 KOG4642 Chaperone-dependent E3 95.9 0.077 1.7E-06 48.0 9.6 99 310-424 13-111 (284)
119 KOG0550 Molecular chaperone (D 95.8 0.16 3.4E-06 49.7 12.2 99 310-421 252-351 (486)
120 PF12968 DUF3856: Domain of Un 95.8 0.53 1.1E-05 37.9 13.1 114 313-427 15-136 (144)
121 PF12862 Apc5: Anaphase-promot 95.8 0.094 2E-06 40.9 9.1 65 360-424 9-74 (94)
122 PRK15363 pathogenicity island 95.8 0.044 9.6E-07 46.7 7.4 74 346-432 32-105 (157)
123 PF10579 Rapsyn_N: Rapsyn N-te 95.7 0.13 2.8E-06 38.2 8.8 72 308-384 7-78 (80)
124 KOG0547 Translocase of outer m 95.6 0.061 1.3E-06 53.5 8.6 102 314-424 469-570 (606)
125 TIGR00540 hemY_coli hemY prote 95.5 0.092 2E-06 53.0 10.3 87 321-422 313-401 (409)
126 PF13525 YfiO: Outer membrane 95.5 0.56 1.2E-05 42.3 14.3 127 309-450 44-195 (203)
127 KOG1125 TPR repeat-containing 95.5 0.039 8.4E-07 55.8 7.0 78 321-406 478-559 (579)
128 KOG0548 Molecular co-chaperone 95.5 0.088 1.9E-06 52.9 9.4 109 311-443 6-114 (539)
129 KOG4555 TPR repeat-containing 95.5 1.2 2.6E-05 36.7 14.1 123 312-446 48-174 (175)
130 KOG0624 dsRNA-activated protei 95.4 0.65 1.4E-05 44.4 14.5 122 302-444 150-271 (504)
131 KOG1130 Predicted G-alpha GTPa 95.4 0.058 1.3E-06 52.5 7.8 102 317-422 205-306 (639)
132 PF13181 TPR_8: Tetratricopept 95.4 0.033 7.1E-07 34.0 4.1 30 392-421 2-31 (34)
133 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.075 1.6E-06 52.9 8.5 66 308-378 76-141 (453)
134 COG4783 Putative Zn-dependent 95.3 0.14 3E-06 51.1 10.1 94 310-419 309-402 (484)
135 PF13176 TPR_7: Tetratricopept 95.3 0.039 8.4E-07 34.5 4.3 30 351-380 1-30 (36)
136 KOG1126 DNA-binding cell divis 95.3 0.034 7.4E-07 57.1 6.0 88 317-420 431-518 (638)
137 KOG2376 Signal recognition par 95.1 0.28 6.1E-06 50.0 11.8 105 314-418 117-251 (652)
138 KOG1174 Anaphase-promoting com 95.1 0.35 7.6E-06 47.3 11.8 125 314-448 341-493 (564)
139 PF13371 TPR_9: Tetratricopept 95.0 0.18 4E-06 36.7 8.1 63 316-391 4-66 (73)
140 cd05804 StaR_like StaR_like; a 95.0 0.32 6.9E-06 47.7 12.0 74 341-422 106-179 (355)
141 KOG1941 Acetylcholine receptor 94.9 0.39 8.4E-06 46.2 11.3 117 320-442 135-255 (518)
142 KOG2076 RNA polymerase III tra 94.7 0.43 9.4E-06 50.9 12.2 100 304-419 136-235 (895)
143 PF08631 SPO22: Meiosis protei 94.6 0.6 1.3E-05 44.4 12.5 112 319-432 5-123 (278)
144 TIGR00540 hemY_coli hemY prote 94.6 1.6 3.5E-05 43.9 16.3 104 311-434 88-191 (409)
145 PF10300 DUF3808: Protein of u 94.6 0.46 1E-05 48.8 12.3 125 310-445 270-401 (468)
146 COG2976 Uncharacterized protei 94.5 1.1 2.5E-05 39.5 12.5 106 311-437 93-199 (207)
147 PLN03158 methionine aminopepti 94.5 0.029 6.3E-07 55.8 3.1 38 26-64 8-52 (396)
148 PF12895 Apc3: Anaphase-promot 94.4 0.064 1.4E-06 40.7 4.3 50 361-416 1-50 (84)
149 KOG2076 RNA polymerase III tra 94.4 0.29 6.3E-06 52.2 10.1 95 307-416 414-508 (895)
150 PRK10866 outer membrane biogen 94.3 0.54 1.2E-05 43.8 11.0 81 350-440 33-113 (243)
151 KOG0545 Aryl-hydrocarbon recep 94.3 1.9 4.2E-05 39.4 13.7 105 307-419 178-292 (329)
152 KOG2857 Predicted MYND Zn-fing 94.2 0.015 3.2E-07 47.4 0.4 38 27-69 5-44 (157)
153 PF08631 SPO22: Meiosis protei 94.2 0.2 4.3E-06 47.7 8.2 80 359-438 3-85 (278)
154 PRK10747 putative protoheme IX 94.2 0.35 7.5E-06 48.6 10.4 62 351-421 330-391 (398)
155 KOG1155 Anaphase-promoting com 94.1 1.1 2.3E-05 44.7 12.7 90 341-442 427-516 (559)
156 KOG0547 Translocase of outer m 94.1 0.52 1.1E-05 47.2 10.5 108 304-428 112-219 (606)
157 COG1729 Uncharacterized protei 94.0 0.38 8.2E-06 44.7 9.2 89 352-450 144-232 (262)
158 PF00244 14-3-3: 14-3-3 protei 94.0 1.1 2.3E-05 41.5 12.3 84 366-449 143-228 (236)
159 KOG4648 Uncharacterized conser 94.0 0.85 1.9E-05 43.6 11.4 95 309-419 99-193 (536)
160 PRK10747 putative protoheme IX 94.0 0.29 6.3E-06 49.2 9.1 98 314-419 160-291 (398)
161 PF13428 TPR_14: Tetratricopep 93.8 0.15 3.3E-06 33.3 4.5 37 393-434 3-39 (44)
162 KOG0624 dsRNA-activated protei 93.7 1.1 2.4E-05 43.0 11.6 116 306-442 37-152 (504)
163 PLN03088 SGT1, suppressor of 93.6 0.38 8.2E-06 47.6 9.1 59 354-420 7-65 (356)
164 PF04733 Coatomer_E: Coatomer 93.6 0.73 1.6E-05 44.1 10.7 98 322-440 182-280 (290)
165 KOG2002 TPR-containing nuclear 93.6 1.6 3.4E-05 47.3 13.8 123 308-443 453-577 (1018)
166 KOG1155 Anaphase-promoting com 93.5 1.3 2.8E-05 44.2 12.0 87 321-423 378-464 (559)
167 COG4700 Uncharacterized protei 93.5 1.1 2.4E-05 39.3 10.3 99 308-419 90-188 (251)
168 KOG0553 TPR repeat-containing 93.4 0.24 5.2E-06 46.5 6.8 60 311-378 119-178 (304)
169 PF00515 TPR_1: Tetratricopept 93.3 0.19 4.2E-06 30.5 4.2 30 350-379 2-31 (34)
170 PLN03081 pentatricopeptide (PP 93.3 1.3 2.8E-05 48.1 13.4 90 351-448 496-603 (697)
171 PRK10153 DNA-binding transcrip 93.2 0.26 5.6E-06 51.1 7.4 68 350-431 421-488 (517)
172 KOG1174 Anaphase-promoting com 93.1 0.7 1.5E-05 45.3 9.5 86 345-447 434-519 (564)
173 PF10516 SHNi-TPR: SHNi-TPR; 93.1 0.21 4.5E-06 31.6 4.0 37 350-386 2-38 (38)
174 PF09295 ChAPs: ChAPs (Chs5p-A 93.0 0.78 1.7E-05 45.7 10.1 83 317-415 210-292 (395)
175 PF07719 TPR_2: Tetratricopept 92.9 0.2 4.4E-06 30.2 3.9 30 350-379 2-31 (34)
176 KOG1079 Transcriptional repres 92.9 0.092 2E-06 54.0 3.4 41 182-222 665-709 (739)
177 PF06552 TOM20_plant: Plant sp 92.7 1.1 2.3E-05 39.2 9.2 104 345-449 21-136 (186)
178 PF03704 BTAD: Bacterial trans 92.6 2.1 4.5E-05 36.0 11.1 74 309-390 64-138 (146)
179 KOG1585 Protein required for f 92.3 7.7 0.00017 35.7 14.4 115 317-442 41-159 (308)
180 PRK14574 hmsH outer membrane p 92.3 0.71 1.5E-05 50.7 9.6 86 318-419 79-164 (822)
181 COG5010 TadD Flp pilus assembl 92.3 1.6 3.6E-05 40.2 10.4 99 341-450 95-195 (257)
182 COG3118 Thioredoxin domain-con 92.2 5.7 0.00012 37.5 14.0 120 311-441 138-301 (304)
183 PF10516 SHNi-TPR: SHNi-TPR; 92.2 0.25 5.4E-06 31.2 3.6 36 393-428 3-38 (38)
184 PF10602 RPN7: 26S proteasome 92.1 1.8 4E-05 38.0 10.3 104 311-421 40-143 (177)
185 PF04438 zf-HIT: HIT zinc fing 92.0 0.074 1.6E-06 31.7 0.9 28 28-57 3-30 (30)
186 PRK15331 chaperone protein Sic 92.0 2.6 5.6E-05 36.3 10.6 75 345-427 33-107 (165)
187 KOG1941 Acetylcholine receptor 91.8 1.2 2.5E-05 43.1 9.1 101 322-424 177-279 (518)
188 PF13428 TPR_14: Tetratricopep 91.8 0.37 8E-06 31.4 4.2 35 351-390 3-37 (44)
189 PF04781 DUF627: Protein of un 91.7 2.9 6.2E-05 33.4 9.8 102 313-420 2-107 (111)
190 KOG1128 Uncharacterized conser 91.6 1.4 3E-05 46.3 10.1 118 286-419 459-581 (777)
191 KOG3081 Vesicle coat complex C 91.4 2.1 4.5E-05 39.7 9.9 44 375-419 192-235 (299)
192 PF13174 TPR_6: Tetratricopept 91.3 0.26 5.6E-06 29.5 3.0 28 393-420 2-29 (33)
193 COG4235 Cytochrome c biogenesi 91.2 5.7 0.00012 37.5 12.9 117 313-449 162-281 (287)
194 KOG1156 N-terminal acetyltrans 91.2 1.4 3E-05 45.6 9.5 115 309-447 9-123 (700)
195 KOG0508 Ankyrin repeat protein 90.9 0.14 3E-06 50.7 2.1 76 374-449 320-395 (615)
196 KOG3060 Uncharacterized conser 90.8 1.3 2.9E-05 40.7 8.1 91 316-422 129-222 (289)
197 PF13181 TPR_8: Tetratricopept 90.8 0.55 1.2E-05 28.3 4.1 31 350-380 2-32 (34)
198 KOG1129 TPR repeat-containing 90.6 0.98 2.1E-05 43.0 7.3 66 348-421 394-459 (478)
199 smart00028 TPR Tetratricopepti 90.5 0.36 7.7E-06 27.7 3.1 28 393-420 3-30 (34)
200 KOG4555 TPR repeat-containing 90.4 0.79 1.7E-05 37.7 5.7 57 357-421 51-107 (175)
201 PF09986 DUF2225: Uncharacteri 90.3 0.93 2E-05 41.2 6.9 90 362-452 90-180 (214)
202 PF14561 TPR_20: Tetratricopep 90.3 1 2.3E-05 34.7 6.1 57 345-401 18-89 (90)
203 PF04733 Coatomer_E: Coatomer 90.2 2.9 6.3E-05 40.0 10.4 89 317-419 141-229 (290)
204 COG4783 Putative Zn-dependent 90.0 6.8 0.00015 39.5 12.8 108 316-443 349-473 (484)
205 smart00101 14_3_3 14-3-3 homol 89.9 8.5 0.00019 35.7 12.8 81 366-448 145-229 (244)
206 KOG1585 Protein required for f 89.8 6.8 0.00015 36.0 11.6 82 341-424 23-104 (308)
207 KOG2003 TPR repeat-containing 89.8 0.38 8.1E-06 47.5 3.9 115 298-419 140-265 (840)
208 KOG1338 Uncharacterized conser 89.7 1.2 2.5E-05 43.4 7.1 81 147-227 173-264 (466)
209 PF13512 TPR_18: Tetratricopep 89.7 2.2 4.8E-05 35.8 8.0 73 352-434 13-85 (142)
210 KOG4162 Predicted calmodulin-b 89.6 2.7 5.9E-05 44.4 10.2 91 315-421 692-784 (799)
211 PF09889 DUF2116: Uncharacteri 89.5 0.31 6.7E-06 34.1 2.3 28 27-61 3-30 (59)
212 KOG3364 Membrane protein invol 89.5 3.8 8.1E-05 34.0 8.9 89 347-444 30-119 (149)
213 PLN03077 Protein ECB2; Provisi 89.3 8.5 0.00018 42.9 14.9 125 317-448 599-766 (857)
214 PF13174 TPR_6: Tetratricopept 89.1 0.68 1.5E-05 27.5 3.5 29 351-379 2-30 (33)
215 PF05053 Menin: Menin; InterP 88.9 5.2 0.00011 41.0 11.3 74 366-445 296-370 (618)
216 PF14853 Fis1_TPR_C: Fis1 C-te 88.9 2.2 4.8E-05 29.2 6.2 46 393-443 3-48 (53)
217 PF13431 TPR_17: Tetratricopep 88.7 0.28 6E-06 30.1 1.5 25 387-411 9-33 (34)
218 KOG3081 Vesicle coat complex C 88.6 9.2 0.0002 35.6 11.7 100 322-441 188-287 (299)
219 KOG3617 WD40 and TPR repeat-co 88.2 2.6 5.6E-05 45.1 8.8 74 318-417 811-884 (1416)
220 PF13431 TPR_17: Tetratricopep 88.2 0.69 1.5E-05 28.3 3.1 25 345-369 9-33 (34)
221 PF14561 TPR_20: Tetratricopep 87.8 2.1 4.5E-05 33.0 6.2 51 391-442 22-88 (90)
222 KOG4162 Predicted calmodulin-b 87.8 4 8.7E-05 43.2 10.0 78 341-428 473-550 (799)
223 PF07721 TPR_4: Tetratricopept 87.7 0.56 1.2E-05 26.7 2.3 25 392-416 2-26 (26)
224 PLN03218 maturation of RBCL 1; 87.1 8.3 0.00018 43.8 12.8 90 316-417 516-605 (1060)
225 PF09295 ChAPs: ChAPs (Chs5p-A 86.8 4.3 9.4E-05 40.5 9.4 92 319-429 181-272 (395)
226 COG3071 HemY Uncharacterized e 86.6 7 0.00015 38.3 10.3 69 341-421 323-391 (400)
227 KOG1081 Transcription factor N 86.4 0.33 7.1E-06 49.4 1.3 51 174-224 362-417 (463)
228 PF09670 Cas_Cas02710: CRISPR- 86.1 17 0.00037 36.2 13.3 113 310-428 134-282 (379)
229 TIGR03504 FimV_Cterm FimV C-te 86.0 1.9 4.1E-05 28.2 4.3 41 394-440 2-42 (44)
230 PF12862 Apc5: Anaphase-promot 86.0 9.8 0.00021 29.4 9.3 81 318-400 9-90 (94)
231 PLN03218 maturation of RBCL 1; 86.0 15 0.00032 41.9 14.1 90 317-418 552-641 (1060)
232 PRK14720 transcript cleavage f 86.0 4 8.7E-05 44.9 9.3 63 351-422 118-180 (906)
233 PRK14720 transcript cleavage f 85.8 12 0.00025 41.5 12.6 102 315-432 39-152 (906)
234 KOG0550 Molecular chaperone (D 85.5 4.3 9.3E-05 40.1 8.2 95 316-420 212-316 (486)
235 PLN02789 farnesyltranstransfer 85.4 16 0.00034 35.5 12.4 94 319-420 49-171 (320)
236 COG3947 Response regulator con 85.3 4.7 0.0001 38.0 8.1 72 350-429 280-351 (361)
237 PF04184 ST7: ST7 protein; In 85.1 19 0.00042 36.6 12.8 63 348-416 258-320 (539)
238 COG2909 MalT ATP-dependent tra 85.1 12 0.00025 40.7 11.8 110 311-424 419-530 (894)
239 cd02681 MIT_calpain7_1 MIT: do 85.0 5.6 0.00012 29.5 6.9 53 390-442 5-60 (76)
240 PF12569 NARP1: NMDA receptor- 84.9 3.4 7.5E-05 42.8 7.9 63 348-418 193-255 (517)
241 PF04910 Tcf25: Transcriptiona 84.8 29 0.00063 34.3 14.1 82 296-377 25-131 (360)
242 KOG0508 Ankyrin repeat protein 84.4 0.56 1.2E-05 46.6 1.8 71 332-402 320-390 (615)
243 PRK10941 hypothetical protein; 83.5 15 0.00032 34.7 10.9 85 348-445 180-264 (269)
244 PRK11906 transcriptional regul 83.4 6.7 0.00015 39.5 8.8 61 351-419 340-400 (458)
245 COG2976 Uncharacterized protei 83.3 27 0.00059 31.0 11.5 60 352-416 92-151 (207)
246 cd02682 MIT_AAA_Arch MIT: doma 82.3 9.8 0.00021 28.1 7.2 56 390-445 5-62 (75)
247 KOG3612 PHD Zn-finger protein 81.8 0.37 7.9E-06 48.5 -0.6 43 26-71 526-568 (588)
248 KOG3785 Uncharacterized conser 81.4 5 0.00011 38.8 6.8 87 316-417 31-117 (557)
249 KOG1586 Protein required for f 81.3 28 0.0006 32.0 11.0 55 364-420 88-143 (288)
250 PLN03081 pentatricopeptide (PP 81.3 14 0.00031 40.0 11.4 84 317-418 269-352 (697)
251 PLN02789 farnesyltranstransfer 81.3 16 0.00036 35.4 10.6 48 349-404 142-189 (320)
252 PF10602 RPN7: 26S proteasome 80.9 16 0.00034 32.1 9.5 72 347-423 34-105 (177)
253 PF07721 TPR_4: Tetratricopept 80.8 2.9 6.3E-05 23.7 3.2 23 351-373 3-25 (26)
254 PF09311 Rab5-bind: Rabaptin-l 80.5 3.9 8.5E-05 36.1 5.5 47 344-390 135-181 (181)
255 PF12855 Ecl1: Life-span regul 80.3 0.92 2E-05 29.5 1.1 30 28-61 7-36 (43)
256 KOG0376 Serine-threonine phosp 80.2 5.4 0.00012 40.1 6.8 114 310-444 7-120 (476)
257 PF11817 Foie-gras_1: Foie gra 80.1 13 0.00029 34.5 9.3 59 387-447 174-232 (247)
258 PLN03077 Protein ECB2; Provisi 79.9 13 0.00027 41.6 10.7 88 316-416 563-650 (857)
259 PRK10153 DNA-binding transcrip 79.8 16 0.00035 38.0 10.7 86 322-421 357-450 (517)
260 COG4105 ComL DNA uptake lipopr 79.5 9 0.0002 35.5 7.6 63 352-419 37-99 (254)
261 PF09311 Rab5-bind: Rabaptin-l 79.4 3.9 8.4E-05 36.1 5.1 51 382-432 131-181 (181)
262 COG4700 Uncharacterized protei 79.4 9.2 0.0002 33.7 7.2 67 347-420 87-153 (251)
263 PF04184 ST7: ST7 protein; In 79.1 19 0.00042 36.6 10.3 56 313-374 265-320 (539)
264 cd02679 MIT_spastin MIT: domai 78.9 14 0.0003 27.7 7.1 60 390-449 7-75 (79)
265 KOG2041 WD40 repeat protein [G 78.8 30 0.00065 36.7 11.7 23 418-440 841-863 (1189)
266 KOG2796 Uncharacterized conser 78.3 27 0.00059 32.6 10.1 98 314-421 219-316 (366)
267 cd02683 MIT_1 MIT: domain cont 76.8 13 0.00028 27.6 6.5 53 390-442 5-59 (77)
268 PRK01343 zinc-binding protein; 76.7 2 4.4E-05 29.7 2.0 27 27-59 9-35 (57)
269 KOG2300 Uncharacterized conser 76.6 69 0.0015 32.7 13.1 79 360-442 456-534 (629)
270 PRK00418 DNA gyrase inhibitor; 76.3 1.9 4.1E-05 30.4 1.8 11 49-59 26-36 (62)
271 smart00028 TPR Tetratricopepti 76.2 4.7 0.0001 22.5 3.5 28 351-378 3-30 (34)
272 KOG4317 Predicted Zn-finger pr 76.2 0.92 2E-05 42.5 0.2 38 26-68 6-43 (383)
273 PF03884 DUF329: Domain of unk 76.0 1.4 3.1E-05 30.5 1.1 11 49-59 22-32 (57)
274 PF11817 Foie-gras_1: Foie gra 76.0 37 0.0008 31.5 11.0 65 350-416 179-243 (247)
275 PF12569 NARP1: NMDA receptor- 75.9 42 0.00091 35.0 12.2 38 391-428 305-342 (517)
276 PLN03144 Carbon catabolite rep 75.8 1.7 3.7E-05 45.7 2.1 27 39-65 74-107 (606)
277 KOG0495 HAT repeat protein [RN 75.6 40 0.00087 35.6 11.5 28 394-421 654-681 (913)
278 KOG2796 Uncharacterized conser 75.6 72 0.0016 29.9 12.1 58 351-415 179-236 (366)
279 smart00745 MIT Microtubule Int 75.5 19 0.0004 26.5 7.2 37 389-425 6-42 (77)
280 KOG1127 TPR repeat-containing 75.3 18 0.0004 39.8 9.5 68 349-424 596-663 (1238)
281 PF15015 NYD-SP12_N: Spermatog 75.3 50 0.0011 33.0 11.6 114 311-432 180-303 (569)
282 PF10345 Cohesin_load: Cohesin 75.2 66 0.0014 34.3 14.0 99 319-422 72-170 (608)
283 TIGR02710 CRISPR-associated pr 75.2 79 0.0017 31.4 13.3 107 313-422 136-277 (380)
284 TIGR03504 FimV_Cterm FimV C-te 75.1 3.7 7.9E-05 26.9 2.8 26 352-377 2-27 (44)
285 PF08189 Meleagrin: Meleagrin/ 74.7 0.65 1.4E-05 28.4 -0.7 19 45-63 6-25 (39)
286 PF10255 Paf67: RNA polymerase 74.4 13 0.00028 37.1 7.7 73 353-425 126-198 (404)
287 KOG4340 Uncharacterized conser 74.0 14 0.0003 35.0 7.3 78 322-415 25-102 (459)
288 PF04810 zf-Sec23_Sec24: Sec23 73.6 1.6 3.6E-05 27.9 0.9 28 266-295 3-34 (40)
289 KOG1127 TPR repeat-containing 73.6 23 0.0005 39.1 9.7 105 313-426 602-706 (1238)
290 PF14853 Fis1_TPR_C: Fis1 C-te 73.5 7.2 0.00016 26.7 4.1 27 351-377 3-29 (53)
291 PF10952 DUF2753: Protein of u 73.4 29 0.00063 28.4 7.9 67 353-419 5-78 (140)
292 COG0457 NrfG FOG: TPR repeat [ 73.0 34 0.00074 29.4 9.8 96 316-423 139-234 (291)
293 cd02684 MIT_2 MIT: domain cont 72.9 27 0.00059 25.8 7.4 55 389-443 4-60 (75)
294 KOG2610 Uncharacterized conser 72.9 33 0.00073 33.2 9.6 96 313-423 109-207 (491)
295 PF09613 HrpB1_HrpK: Bacterial 72.2 52 0.0011 28.3 9.8 60 308-375 11-70 (160)
296 PF01535 PPR: PPR repeat; Int 72.2 5.8 0.00013 22.8 3.1 26 352-377 3-28 (31)
297 KOG4814 Uncharacterized conser 71.8 32 0.00069 36.1 9.8 104 310-423 357-460 (872)
298 KOG3617 WD40 and TPR repeat-co 71.6 29 0.00062 37.6 9.6 80 344-423 853-944 (1416)
299 PF04212 MIT: MIT (microtubule 71.4 16 0.00035 26.2 5.9 54 390-443 4-59 (69)
300 KOG1308 Hsp70-interacting prot 70.3 3.7 7.9E-05 39.5 2.7 96 308-419 115-210 (377)
301 PRK00398 rpoP DNA-directed RNA 70.0 3.3 7.1E-05 27.3 1.7 28 266-295 4-31 (46)
302 KOG3362 Predicted BBOX Zn-fing 70.0 2.1 4.5E-05 35.4 0.9 32 25-58 116-147 (156)
303 KOG4563 Cell cycle-regulated h 69.2 12 0.00026 36.4 5.9 57 355-411 47-103 (400)
304 KOG4340 Uncharacterized conser 69.2 15 0.00033 34.8 6.4 62 350-419 145-206 (459)
305 COG4235 Cytochrome c biogenesi 69.2 23 0.0005 33.5 7.7 67 345-419 152-221 (287)
306 COG3024 Uncharacterized protei 69.0 2.5 5.5E-05 29.7 1.0 11 49-59 27-37 (65)
307 COG3947 Response regulator con 68.8 26 0.00057 33.2 7.8 70 307-384 279-348 (361)
308 COG2909 MalT ATP-dependent tra 67.9 1.2E+02 0.0026 33.4 13.4 91 345-441 576-666 (894)
309 KOG2561 Adaptor protein NUB1, 67.9 26 0.00057 35.0 8.0 111 309-421 165-297 (568)
310 KOG1128 Uncharacterized conser 67.7 28 0.0006 37.1 8.5 97 319-431 531-627 (777)
311 KOG3060 Uncharacterized conser 67.7 1.1E+02 0.0023 28.6 11.6 90 313-418 92-181 (289)
312 PF00244 14-3-3: 14-3-3 protei 66.8 19 0.00042 33.2 6.7 56 324-379 143-199 (236)
313 PF10373 EST1_DNA_bind: Est1 D 66.5 17 0.00036 34.1 6.5 44 368-419 1-44 (278)
314 PF12968 DUF3856: Domain of Un 66.3 63 0.0014 26.4 8.4 64 361-424 21-88 (144)
315 PF10013 DUF2256: Uncharacteri 66.0 2.7 5.8E-05 27.0 0.6 29 27-57 8-40 (42)
316 KOG3783 Uncharacterized conser 65.8 50 0.0011 34.0 9.7 64 355-419 455-519 (546)
317 KOG2047 mRNA splicing factor [ 65.5 1.2E+02 0.0027 32.1 12.5 39 398-437 665-718 (835)
318 KOG0543 FKBP-type peptidyl-pro 64.9 96 0.0021 30.8 11.2 79 306-397 256-334 (397)
319 TIGR00756 PPR pentatricopeptid 64.5 12 0.00025 22.0 3.4 26 352-377 3-28 (35)
320 PF13041 PPR_2: PPR repeat fam 64.4 13 0.00029 24.5 3.9 28 350-377 4-31 (50)
321 COG3071 HemY Uncharacterized e 63.8 1.6E+02 0.0034 29.2 14.0 107 310-436 87-193 (400)
322 KOG2581 26S proteasome regulat 63.8 1.3E+02 0.0029 30.0 11.7 74 340-419 200-275 (493)
323 PF13812 PPR_3: Pentatricopept 63.6 12 0.00025 22.1 3.2 28 350-377 2-29 (34)
324 cd02680 MIT_calpain7_2 MIT: do 63.6 33 0.00071 25.4 6.1 48 390-440 5-53 (75)
325 cd02677 MIT_SNX15 MIT: domain 63.4 49 0.0011 24.4 7.0 54 389-442 4-59 (75)
326 cd02678 MIT_VPS4 MIT: domain c 63.2 41 0.00088 24.7 6.7 53 390-442 5-59 (75)
327 cd02656 MIT MIT: domain contai 63.2 42 0.0009 24.5 6.8 37 390-426 5-41 (75)
328 PRK13184 pknD serine/threonine 62.9 66 0.0014 36.0 10.9 67 371-445 534-601 (932)
329 PF12854 PPR_1: PPR repeat 62.9 14 0.0003 22.4 3.5 26 350-375 8-33 (34)
330 PF13281 DUF4071: Domain of un 62.8 1.6E+02 0.0034 29.3 12.4 96 340-446 132-230 (374)
331 PRK11906 transcriptional regul 62.7 1.5E+02 0.0032 30.2 12.3 111 310-442 341-452 (458)
332 PF02259 FAT: FAT domain; Int 62.1 42 0.00091 32.5 8.7 71 345-419 142-212 (352)
333 COG0457 NrfG FOG: TPR repeat [ 61.8 1E+02 0.0022 26.3 10.9 92 317-423 177-268 (291)
334 COG1198 PriA Primosomal protei 61.4 51 0.0011 35.8 9.4 54 369-430 617-678 (730)
335 COG3629 DnrI DNA-binding trans 61.1 92 0.002 29.5 10.1 80 307-394 153-232 (280)
336 KOG0551 Hsp90 co-chaperone CNS 60.9 76 0.0017 30.8 9.4 99 307-418 81-180 (390)
337 PF09082 DUF1922: Domain of un 60.1 2.3 4.9E-05 30.5 -0.5 31 266-300 4-34 (68)
338 KOG1497 COP9 signalosome, subu 59.9 1.2E+02 0.0026 29.2 10.4 74 347-424 101-177 (399)
339 KOG1156 N-terminal acetyltrans 59.3 1.6E+02 0.0035 31.1 12.1 89 318-422 86-174 (700)
340 PF01485 IBR: IBR domain; Int 59.2 6.8 0.00015 27.5 1.8 29 266-294 19-49 (64)
341 TIGR02059 swm_rep_I cyanobacte 58.9 19 0.00042 28.0 4.3 24 202-225 76-99 (101)
342 PF10938 YfdX: YfdX protein; 58.8 96 0.0021 26.5 9.1 109 312-423 7-149 (155)
343 KOG2300 Uncharacterized conser 58.8 1.2E+02 0.0025 31.1 10.6 96 316-415 454-551 (629)
344 COG3629 DnrI DNA-binding trans 58.6 85 0.0018 29.8 9.4 74 349-430 153-226 (280)
345 KOG1586 Protein required for f 58.4 82 0.0018 29.0 8.7 12 322-333 29-40 (288)
346 PF02259 FAT: FAT domain; Int 58.4 1.5E+02 0.0033 28.5 11.9 112 311-426 150-293 (352)
347 KOG1070 rRNA processing protei 58.3 1.6E+02 0.0035 34.3 12.5 66 350-423 1531-1596(1710)
348 PF04190 DUF410: Protein of un 58.2 1.5E+02 0.0033 27.7 11.2 102 308-415 11-114 (260)
349 KOG4814 Uncharacterized conser 58.1 1.2E+02 0.0026 32.1 10.8 111 337-450 744-867 (872)
350 KOG4234 TPR repeat-containing 58.0 36 0.00079 30.5 6.3 59 311-377 138-196 (271)
351 PF10345 Cohesin_load: Cohesin 57.9 94 0.002 33.2 10.9 80 341-423 51-131 (608)
352 KOG2738 Putative methionine am 57.9 5.4 0.00012 37.5 1.3 34 31-65 12-50 (369)
353 KOG3616 Selective LIM binding 57.7 66 0.0014 34.5 9.0 36 381-416 871-907 (1636)
354 KOG4648 Uncharacterized conser 57.6 47 0.001 32.3 7.4 44 355-399 103-146 (536)
355 PF07754 DUF1610: Domain of un 57.0 8.9 0.00019 21.5 1.6 22 272-293 3-24 (24)
356 KOG2461 Transcription factor B 56.5 6.3 0.00014 39.3 1.6 28 199-226 120-147 (396)
357 KOG2053 Mitochondrial inherita 55.4 88 0.0019 34.3 9.8 23 355-377 83-105 (932)
358 PF09538 FYDLN_acid: Protein o 55.2 8.5 0.00018 30.7 1.9 23 26-48 8-35 (108)
359 KOG0495 HAT repeat protein [RN 54.6 80 0.0017 33.5 9.0 18 355-372 691-708 (913)
360 smart00101 14_3_3 14-3-3 homol 54.2 45 0.00098 30.9 6.7 56 324-379 145-201 (244)
361 KOG2610 Uncharacterized conser 54.0 68 0.0015 31.2 7.8 88 317-416 185-272 (491)
362 COG4068 Uncharacterized protei 52.6 8.6 0.00019 26.5 1.3 24 27-57 8-31 (64)
363 cd02679 MIT_spastin MIT: domai 52.5 67 0.0015 24.0 6.2 61 306-377 7-67 (79)
364 KOG2471 TPR repeat-containing 52.4 2.8E+02 0.0061 28.5 13.4 34 389-422 617-650 (696)
365 cd02678 MIT_VPS4 MIT: domain c 52.2 91 0.002 22.8 7.1 36 305-340 4-39 (75)
366 PF10952 DUF2753: Protein of u 51.2 1.4E+02 0.003 24.6 9.8 71 314-384 8-85 (140)
367 PF12921 ATP13: Mitochondrial 50.9 1.2E+02 0.0027 24.8 8.2 83 352-436 5-95 (126)
368 PF11207 DUF2989: Protein of u 50.5 1.9E+02 0.0041 26.0 11.1 63 343-410 135-197 (203)
369 KOG1538 Uncharacterized conser 50.5 36 0.00077 35.8 5.8 51 357-418 781-831 (1081)
370 PF12753 Nro1: Nuclear pore co 50.4 30 0.00065 34.2 5.1 69 366-439 335-403 (404)
371 PF04910 Tcf25: Transcriptiona 50.2 1.4E+02 0.0029 29.6 9.9 69 345-413 36-125 (360)
372 PF14803 Nudix_N_2: Nudix N-te 50.2 4.4 9.5E-05 24.9 -0.4 23 28-50 1-33 (34)
373 TIGR01010 BexC_CtrB_KpsE polys 50.0 1.9E+02 0.0041 28.5 11.0 79 365-450 182-262 (362)
374 cd02681 MIT_calpain7_1 MIT: do 49.9 1E+02 0.0023 22.8 7.4 34 306-339 5-38 (76)
375 KOG2041 WD40 repeat protein [G 49.8 2.1E+02 0.0046 30.8 11.1 49 342-390 789-855 (1189)
376 PF07720 TPR_3: Tetratricopept 49.6 35 0.00077 21.1 3.7 23 393-415 3-25 (36)
377 KOG0276 Vesicle coat complex C 49.5 1.8E+02 0.0038 30.7 10.4 92 352-445 669-778 (794)
378 PF06552 TOM20_plant: Plant sp 48.6 99 0.0022 27.2 7.5 51 324-382 52-106 (186)
379 PRK14562 haloacid dehalogenase 48.6 2E+02 0.0044 25.8 11.6 142 298-447 21-180 (204)
380 COG5159 RPN6 26S proteasome re 48.4 2.5E+02 0.0054 26.8 10.7 45 317-365 13-61 (421)
381 KOG2471 TPR repeat-containing 48.2 40 0.00086 34.3 5.6 72 353-424 287-368 (696)
382 smart00154 ZnF_AN1 AN1-like Zi 47.0 12 0.00026 23.7 1.3 23 30-53 1-25 (39)
383 PRK11827 hypothetical protein; 46.9 17 0.00036 25.6 2.0 34 261-296 4-37 (60)
384 COG4649 Uncharacterized protei 46.8 2E+02 0.0044 25.3 10.8 97 312-419 99-195 (221)
385 cd02684 MIT_2 MIT: domain cont 46.1 1.2E+02 0.0026 22.3 6.9 43 306-348 5-48 (75)
386 cd09034 BRO1_Alix_like Protein 46.0 2.5E+02 0.0053 27.4 11.1 39 387-425 247-285 (345)
387 PF09297 zf-NADH-PPase: NADH p 45.9 13 0.00028 22.3 1.3 23 272-294 8-30 (32)
388 PF08666 SAF: SAF domain; Int 44.8 13 0.00029 25.9 1.4 17 204-220 3-19 (63)
389 PF10571 UPF0547: Uncharacteri 44.6 19 0.00041 20.6 1.7 20 29-48 2-23 (26)
390 PF10867 DUF2664: Protein of u 44.1 26 0.00056 26.8 2.9 17 418-434 10-26 (89)
391 KOG2053 Mitochondrial inherita 44.1 2.7E+02 0.006 30.7 11.3 87 317-419 19-105 (932)
392 PF10300 DUF3808: Protein of u 44.0 65 0.0014 33.1 6.8 60 357-420 275-334 (468)
393 PF12931 Sec16_C: Sec23-bindin 43.4 99 0.0021 29.4 7.5 58 390-448 197-255 (284)
394 PF04071 zf-like: Cysteine-ric 43.0 90 0.0019 23.8 5.6 42 272-313 37-79 (86)
395 KOG1070 rRNA processing protei 42.7 2.9E+02 0.0062 32.4 11.5 85 321-419 1544-1628(1710)
396 COG4649 Uncharacterized protei 42.7 90 0.0019 27.4 6.2 73 314-395 139-211 (221)
397 COG1997 RPL43A Ribosomal prote 41.7 17 0.00036 27.5 1.5 32 263-296 33-64 (89)
398 cd02683 MIT_1 MIT: domain cont 40.8 1.5E+02 0.0032 22.0 6.8 34 307-340 6-39 (77)
399 KOG4563 Cell cycle-regulated h 40.8 1E+02 0.0022 30.2 6.9 60 306-365 40-99 (400)
400 smart00661 RPOL9 RNA polymeras 40.6 20 0.00044 24.0 1.7 24 272-295 5-30 (52)
401 TIGR02561 HrpB1_HrpK type III 40.0 2.4E+02 0.0051 24.1 10.7 58 312-377 15-72 (153)
402 KOG0686 COP9 signalosome, subu 40.0 1.6E+02 0.0035 29.4 8.2 95 314-416 157-254 (466)
403 KOG2422 Uncharacterized conser 39.9 4.7E+02 0.01 27.5 12.5 70 308-377 285-370 (665)
404 cd09247 BRO1_Alix_like_2 Prote 38.9 1.8E+02 0.0038 28.6 8.7 38 388-425 250-287 (346)
405 KOG2709 Uncharacterized conser 38.9 75 0.0016 31.6 5.8 60 391-450 22-92 (560)
406 KOG2155 Tubulin-tyrosine ligas 38.1 24 0.00053 35.1 2.4 60 177-236 199-264 (631)
407 PRK11519 tyrosine kinase; Prov 37.9 2E+02 0.0043 31.5 9.7 30 418-447 327-356 (719)
408 PF14762 HPS3_Mid: Hermansky-P 37.8 3.7E+02 0.008 26.7 10.4 71 352-423 286-368 (374)
409 KOG1920 IkappaB kinase complex 37.4 76 0.0016 35.9 6.2 71 362-432 921-999 (1265)
410 TIGR02300 FYDLN_acid conserved 37.3 25 0.00053 28.8 1.9 23 26-48 8-35 (129)
411 PF08271 TF_Zn_Ribbon: TFIIB z 36.6 15 0.00033 23.7 0.6 28 267-296 2-30 (43)
412 KOG2047 mRNA splicing factor [ 36.5 1.9E+02 0.0041 30.8 8.4 99 318-423 180-280 (835)
413 COG2912 Uncharacterized conser 36.1 3.6E+02 0.0078 25.4 9.6 78 349-443 181-262 (269)
414 PRK06266 transcription initiat 36.0 74 0.0016 27.9 5.0 35 238-280 115-149 (178)
415 cd09241 BRO1_ScRim20-like Prot 35.0 3.7E+02 0.008 26.4 10.3 37 387-423 233-269 (355)
416 KOG3783 Uncharacterized conser 35.0 3.3E+02 0.0071 28.3 9.8 127 312-444 272-398 (546)
417 smart00647 IBR In Between Ring 34.8 31 0.00067 24.0 2.0 28 266-293 19-48 (64)
418 COG4976 Predicted methyltransf 34.8 58 0.0013 29.9 4.0 54 359-420 5-58 (287)
419 COG3118 Thioredoxin domain-con 34.7 1.4E+02 0.003 28.5 6.7 57 345-401 232-303 (304)
420 COG2075 RPL24A Ribosomal prote 34.6 18 0.00039 25.7 0.7 31 27-58 3-39 (66)
421 PF02150 RNA_POL_M_15KD: RNA p 34.3 16 0.00035 22.5 0.4 27 268-296 4-31 (35)
422 COG1794 RacX Aspartate racemas 34.2 50 0.0011 30.0 3.6 64 364-428 11-77 (230)
423 cd09243 BRO1_Brox_like Protein 34.1 1.6E+02 0.0034 29.1 7.4 39 385-423 242-280 (353)
424 cd02680 MIT_calpain7_2 MIT: do 33.8 2E+02 0.0042 21.3 6.5 34 306-339 5-38 (75)
425 KOG0546 HSP90 co-chaperone CPR 33.6 42 0.00091 32.7 3.2 99 313-419 228-337 (372)
426 COG1675 TFA1 Transcription ini 33.6 1.4E+02 0.0031 26.1 6.2 43 229-279 102-144 (176)
427 cd09246 BRO1_Alix_like_1 Prote 33.5 2.7E+02 0.0058 27.4 9.0 40 385-424 241-280 (353)
428 TIGR00373 conserved hypothetic 33.5 78 0.0017 27.2 4.6 35 238-280 107-141 (158)
429 KOG3824 Huntingtin interacting 33.4 1.1E+02 0.0025 29.3 5.9 54 358-419 125-178 (472)
430 PF04190 DUF410: Protein of un 33.4 4.1E+02 0.0088 24.8 10.9 61 358-421 19-80 (260)
431 COG2888 Predicted Zn-ribbon RN 33.3 23 0.0005 24.7 1.0 34 27-60 9-49 (61)
432 PF08311 Mad3_BUB1_I: Mad3/BUB 33.2 2.5E+02 0.0054 22.9 7.4 86 321-418 40-126 (126)
433 PF01599 Ribosomal_S27: Riboso 33.1 22 0.00048 23.6 0.9 28 266-294 19-47 (47)
434 cd07625 BAR_Vps17p The Bin/Amp 32.9 3.5E+02 0.0076 24.8 9.0 24 344-367 70-93 (230)
435 PF03604 DNA_RNApol_7kD: DNA d 32.0 36 0.00078 20.6 1.6 19 29-47 2-25 (32)
436 KOG2460 Signal recognition par 31.9 6.1E+02 0.013 26.4 12.3 32 353-384 426-457 (593)
437 cd02656 MIT MIT: domain contai 31.9 2E+02 0.0043 20.8 7.3 36 306-341 5-40 (75)
438 PF00856 SET: SET domain; Int 31.8 26 0.00056 29.1 1.4 21 3-23 8-28 (162)
439 smart00671 SEL1 Sel1-like repe 31.8 79 0.0017 18.6 3.3 27 393-419 3-33 (36)
440 KOG1464 COP9 signalosome, subu 31.7 3.9E+02 0.0084 25.3 8.9 69 357-428 199-268 (440)
441 PF04212 MIT: MIT (microtubule 31.0 1.3E+02 0.0028 21.4 4.9 31 307-337 5-35 (69)
442 PF08772 NOB1_Zn_bind: Nin one 30.9 24 0.00053 25.9 0.9 22 26-47 8-32 (73)
443 PF07282 OrfB_Zn_ribbon: Putat 30.5 43 0.00093 24.0 2.2 25 24-48 25-55 (69)
444 KOG1915 Cell cycle control pro 30.1 3.1E+02 0.0068 28.2 8.5 49 319-377 483-535 (677)
445 KOG3364 Membrane protein invol 30.1 3.3E+02 0.0071 22.9 7.3 74 307-391 32-108 (149)
446 PF04053 Coatomer_WDAD: Coatom 30.0 6E+02 0.013 25.9 11.0 74 351-427 349-443 (443)
447 PF10255 Paf67: RNA polymerase 29.4 1E+02 0.0022 31.0 5.2 66 316-381 131-196 (404)
448 KOG1463 26S proteasome regulat 29.3 1.3E+02 0.0029 29.3 5.7 71 353-425 132-202 (411)
449 PF02748 PyrI_C: Aspartate car 29.3 34 0.00074 23.3 1.4 36 265-300 6-50 (52)
450 PF15469 Sec5: Exocyst complex 29.0 1.1E+02 0.0025 26.6 5.1 46 401-447 96-141 (182)
451 PF14858 DUF4486: Domain of un 28.8 6.9E+02 0.015 26.1 11.4 67 353-419 155-225 (542)
452 TIGR03007 pepcterm_ChnLen poly 28.8 5.8E+02 0.012 26.3 11.1 39 411-449 256-294 (498)
453 PF04945 YHS: YHS domain; Int 28.6 32 0.00069 22.6 1.1 12 47-58 24-35 (47)
454 PF13240 zinc_ribbon_2: zinc-r 28.5 35 0.00076 18.8 1.1 19 29-47 1-21 (23)
455 KOG0006 E3 ubiquitin-protein l 28.4 34 0.00073 32.4 1.6 32 263-294 313-345 (446)
456 PRK05978 hypothetical protein; 28.2 41 0.00089 28.5 1.9 12 287-298 54-65 (148)
457 PF08646 Rep_fac-A_C: Replicat 28.1 26 0.00057 29.5 0.8 28 267-295 20-47 (146)
458 COG5600 Transcription-associat 27.8 2.9E+02 0.0064 27.3 7.7 66 352-421 180-250 (413)
459 KOG3785 Uncharacterized conser 27.5 6.1E+02 0.013 25.1 9.9 59 314-384 158-216 (557)
460 KOG1915 Cell cycle control pro 27.5 3.1E+02 0.0068 28.1 8.0 66 358-424 75-140 (677)
461 KOG1464 COP9 signalosome, subu 27.1 5.5E+02 0.012 24.4 9.2 111 315-429 73-183 (440)
462 PF10579 Rapsyn_N: Rapsyn N-te 27.1 2.7E+02 0.0059 20.9 7.1 56 361-421 18-73 (80)
463 KOG4507 Uncharacterized conser 27.0 2.3E+02 0.0049 29.9 7.1 42 394-440 679-720 (886)
464 cd09239 BRO1_HD-PTP_like Prote 27.0 1.9E+02 0.0041 28.6 6.7 38 386-423 247-284 (361)
465 PF07840 FadR_C: FadR C-termin 26.8 3.3E+02 0.0072 23.5 7.2 57 383-442 83-147 (164)
466 PF02255 PTS_IIA: PTS system, 26.5 3.1E+02 0.0067 21.3 8.9 68 306-380 13-95 (96)
467 PF12063 DUF3543: Domain of un 25.8 5.3E+02 0.012 23.8 11.9 66 363-428 119-203 (238)
468 COG2158 Uncharacterized protei 25.3 1.2E+02 0.0025 24.0 3.7 31 280-310 57-87 (112)
469 cd09240 BRO1_Alix Protein-inte 25.2 4.5E+02 0.0098 25.7 9.0 61 387-447 251-313 (346)
470 PRK14891 50S ribosomal protein 25.1 42 0.00091 27.4 1.4 32 27-58 4-40 (131)
471 cd03572 ENTH_epsin_related ENT 24.9 3.3E+02 0.0071 22.3 6.6 17 386-402 14-30 (122)
472 PF04423 Rad50_zn_hook: Rad50 24.9 1.1E+02 0.0025 20.6 3.4 25 287-311 22-46 (54)
473 KOG2709 Uncharacterized conser 24.8 3.9E+02 0.0085 26.8 8.0 42 298-339 13-54 (560)
474 PF07227 DUF1423: Protein of u 24.6 51 0.0011 33.1 2.1 15 284-298 182-196 (446)
475 COG2178 Predicted RNA-binding 24.5 5.1E+02 0.011 23.2 15.6 141 298-448 20-180 (204)
476 PF13248 zf-ribbon_3: zinc-rib 24.4 49 0.0011 18.7 1.2 20 28-47 3-24 (26)
477 cd02682 MIT_AAA_Arch MIT: doma 24.4 3E+02 0.0064 20.4 7.4 35 306-340 5-39 (75)
478 TIGR01716 RGG_Cterm transcript 24.4 5.1E+02 0.011 23.0 10.7 81 344-428 123-204 (220)
479 PF05168 HEPN: HEPN domain; I 24.4 3.4E+02 0.0073 21.0 7.8 30 301-330 2-31 (118)
480 PRK14350 ligA NAD-dependent DN 24.3 52 0.0011 35.4 2.3 13 3-15 363-375 (669)
481 PF04570 DUF581: Protein of un 24.3 44 0.00096 23.3 1.2 34 26-59 15-50 (58)
482 PF12760 Zn_Tnp_IS1595: Transp 24.3 53 0.0011 21.5 1.6 31 261-293 14-45 (46)
483 TIGR03017 EpsF chain length de 24.0 1.3E+02 0.0028 30.6 5.1 34 415-448 267-300 (444)
484 PRK07956 ligA NAD-dependent DN 23.9 45 0.00097 35.9 1.8 34 3-36 366-413 (665)
485 PRK09591 celC cellobiose phosp 23.8 3.7E+02 0.008 21.3 8.0 30 306-335 19-48 (104)
486 COG4785 NlpI Lipoprotein NlpI, 23.8 3.3E+02 0.0071 25.0 6.8 33 345-377 95-127 (297)
487 PRK09841 cryptic autophosphory 23.8 4.4E+02 0.0096 28.9 9.4 30 419-448 328-357 (726)
488 PF13281 DUF4071: Domain of un 23.8 2.4E+02 0.0052 28.0 6.6 59 319-384 194-261 (374)
489 PF07295 DUF1451: Protein of u 23.7 48 0.001 28.1 1.5 25 26-50 111-141 (146)
490 KOG1920 IkappaB kinase complex 23.7 6.4E+02 0.014 29.1 10.3 19 356-374 972-990 (1265)
491 PF10938 YfdX: YfdX protein; 23.5 2.6E+02 0.0057 23.9 6.1 72 305-378 73-146 (155)
492 PF11207 DUF2989: Protein of u 23.5 3E+02 0.0065 24.7 6.5 50 317-370 150-199 (203)
493 TIGR03229 benzo_1_2_benA benzo 23.4 93 0.002 31.6 3.8 54 187-241 296-351 (433)
494 smart00659 RPOLCX RNA polymera 23.3 53 0.0012 21.4 1.4 8 286-293 20-27 (44)
495 PF13717 zinc_ribbon_4: zinc-r 23.1 37 0.0008 21.0 0.6 22 28-49 3-35 (36)
496 KOG2880 SMAD6 interacting prot 23.0 1.2E+02 0.0027 29.4 4.2 59 388-447 32-90 (424)
497 COG4103 Uncharacterized protei 22.8 4.6E+02 0.01 22.0 7.5 74 366-442 5-78 (148)
498 PF09670 Cas_Cas02710: CRISPR- 22.8 7.4E+02 0.016 24.6 10.0 63 354-420 136-198 (379)
499 smart00745 MIT Microtubule Int 22.5 3.1E+02 0.0066 19.9 7.3 34 306-339 7-40 (77)
500 PF09205 DUF1955: Domain of un 22.3 4.8E+02 0.01 22.0 7.5 50 318-375 97-146 (161)
No 1
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=99.94 E-value=1.2e-24 Score=224.04 Aligned_cols=419 Identities=24% Similarity=0.352 Sum_probs=272.6
Q ss_pred CCCCCCCeEEEeCCceeecCCCCCCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhhchhhhc-cCC
Q 012829 3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKR-KSV 81 (455)
Q Consensus 3 ~~i~~Ge~il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~l~~~~~-~~~ 81 (455)
.+|++|++|+.|.|++.+|.. ..|..|+.. ....|..|....+|+..++...|..|+++|.. ........ ...
T Consensus 32 ~~i~~g~~i~~e~p~~~~p~~----~~~~~c~~~-~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 105 (482)
T KOG2084|consen 32 QAIEAGEVILEEEPLVVGPAS----KSCSRCLGC-SCDHCRRCLEAIECNKCQQRGWALCGKFACSA-DLAKLECEPLKL 105 (482)
T ss_pred cccCCCceEEecCcceeeecc----cCCcccccc-chhhhhcCCccHhhhhhhccCccccchhhcch-hhccccccchhh
Confidence 479999999999999999986 566666654 46778888888899876655556678888876 32211100 000
Q ss_pred CHHHHHHHHHHHHHHhhCCCCCCCCCCCchhH--HHHhhcccCCCC--hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 012829 82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSL--VEALVAHMSDID--EKQLLLYAQIANLVNLILQWPEISINEIAENF 157 (455)
Q Consensus 82 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~ 157 (455)
.+....+... ...... ..+.+.. +..+....+... ......+....................+..++
T Consensus 106 ~~~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (482)
T KOG2084|consen 106 VGAPEECLAL---SSLHEE------SREAIVLLSLLEECSLSAEKPRLRLDLSYLEHGATEDDQSHLLLVLAADCISKLF 176 (482)
T ss_pred ccchHHHHHh---hcCCcc------ccchHHHHHHHHHhhhhcccccHhHHHhhHHHHhhHHhhccccchhHHHHHHHHH
Confidence 0000111110 000000 0111111 111111111100 00011111111100000001111223344455
Q ss_pred hhhhccccccccCCCC----cceeeecccccccCCCCCCCcEEEEeCCEEEEEEecccCCCC-eeEEeecCCCCCHHHHH
Q 012829 158 SKLACNAHTICNSELR----PLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGA-EVLISYIETAGSTMTRQ 232 (455)
Q Consensus 158 ~~~~~N~~~i~~~~~~----~~g~~lyp~~s~~NHSC~PN~~~~~~~~~~~v~a~r~I~~Ge-Ei~isY~~~~~~~~~R~ 232 (455)
..+..+++.+.+.... ..|.|+||..+++||||.||+...|+++...+++...+.+++ ||+++|++..+++..||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~ 256 (482)
T KOG2084|consen 177 PSLLCNSITNASSLRVPEPLFLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTDPLLSTASRQ 256 (482)
T ss_pred HHHHHhhhhhhhhhhccccccceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeecccccCHHHHH
Confidence 5566666666554433 599999999999999999999999999999999999998887 99999999999999999
Q ss_pred HHHhccCCeeeeccccCCCCCCCchhhhhhHhhCccCCCCCCcccccCCCC---CCcccCCCCCcCCHHHHHHHHHHHHH
Q 012829 233 KALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDD---KGFTCQQCGLVRSKEEIKKIASEVNI 309 (455)
Q Consensus 233 ~~L~~~y~F~C~C~rC~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~---~~~~C~~C~~~~~~~~~~~~~~e~~~ 309 (455)
..|+..|.|.|.|+||.++. +.+.+..+++|.+++|.+.+.+.... ..|.|..|........+.........
T Consensus 257 ~~l~~~~~f~c~c~rc~d~~-----~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 331 (482)
T KOG2084|consen 257 KQLRQSKLFSCQCPRCLDPT-----ELGTFLSSLRCENCTCGGLLGTSFLDKEDLQWPCTECALVRLKAYVVESREELQN 331 (482)
T ss_pred HHHhhccceeeecCCCCCCC-----ccccchhhhhhcCCCCCCccCCCcccccCCCccccccccchhHHHHHHHHHHHHh
Confidence 99999999999999999863 34567778999988897776654433 58999999998876666554444332
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----------cccHHHHHHHH--HHhhh
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----------LEDWKEALAYC--QLTIP 377 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----------~g~~~~A~~~~--~~~l~ 377 (455)
. ..... ......+.+...+....++.+.........+..++.. ...+..+..++ ...+.
T Consensus 332 ~-----~~~~~----~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (482)
T KOG2084|consen 332 E-----LLDAF----SDLLIEELLLLRQESLELPNDFEVLLLKLHLLFILGSLLGAFLSCSPNAELERLLNLFECRELLK 402 (482)
T ss_pred h-----ccccC----ChhhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHhhhhhHHHH
Confidence 1 00011 1111122233334455666665555444443333322 23455666676 88999
Q ss_pred hHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhhh
Q 012829 378 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL 450 (455)
Q Consensus 378 ~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~~ 450 (455)
+++.+.|..++..+...+.++.....+++...+++.......++....+.+++........+........+..
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (482)
T KOG2084|consen 403 ALRDVKPGEEPLIAYLDYELGKLARELREKVLAEDALKDCKCIMCLARAEDLDKLSEEEQELEEERSEEGPLA 475 (482)
T ss_pred HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhhHh
Confidence 9999999999999999999999999999999999999999999999999999999998888888776655543
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.52 E-value=2.7e-13 Score=136.34 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=122.0
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+..+..+|+|++|+.+++.++++..+.+|-.|+.+..++..++.+|+.++++.+|+.++++++.+++.++|+.||.+|.
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 45666788999999999999999988889989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
.+.+||.+|...|+++||+.++++|++|++..+|..||.+...+..+..+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877666655
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.49 E-value=5.7e-13 Score=134.02 Aligned_cols=136 Identities=18% Similarity=0.261 Sum_probs=129.2
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
-|..+...+++.+|+.+|++++.+...++|+.|+.++.++.+|+.+|...|+|++|..+++++++|+++++|..||.++.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 56667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhh
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 448 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~ 448 (455)
.+.++|.++..++++++|+.++++|++|+...+|++|+.+..+...|..+...+.+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk 382 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK 382 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999998888665544
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.38 E-value=1.4e-12 Score=113.25 Aligned_cols=53 Identities=45% Similarity=0.735 Sum_probs=46.5
Q ss_pred CCCCcceeeecccccccCCCCCCCcEEEEe----CCEEEEEEecccCCCCeeEEeec
Q 012829 170 SELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAEVLISYI 222 (455)
Q Consensus 170 ~~~~~~g~~lyp~~s~~NHSC~PN~~~~~~----~~~~~v~a~r~I~~GeEi~isY~ 222 (455)
......+.++||.++++||||.|||.+.|+ ++.++++|.|||++||||+|||+
T Consensus 106 ~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 106 SEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp TTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 334467899999999999999999999998 78999999999999999999996
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.26 E-value=1.8e-11 Score=92.93 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=72.9
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
|+.++.++.+++.+|..+|+|++|++++++++.+ .+.+|+.||.++..++++|.++..+|++++|++++++|++|.+.
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6788999999999999999999999999999999 88889999999999999999999999999999999999999763
No 6
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.11 E-value=5e-11 Score=97.66 Aligned_cols=46 Identities=33% Similarity=0.512 Sum_probs=40.4
Q ss_pred eeeecccccccCCCCCCCcEEEEeC--C--EEEEEEecccCCCCeeEEee
Q 012829 176 GTGLYPVISIINHSCLPNAVLVFEG--R--LAVVRAVQHVPKGAEVLISY 221 (455)
Q Consensus 176 g~~lyp~~s~~NHSC~PN~~~~~~~--~--~~~v~a~r~I~~GeEi~isY 221 (455)
+..++|.++++||||.||+.+.+.. + .+.++|+|+|++|||||++|
T Consensus 67 ~~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 67 ARRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 3448899999999999999987653 2 59999999999999999998
No 7
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.95 E-value=2e-10 Score=73.13 Aligned_cols=37 Identities=46% Similarity=1.245 Sum_probs=32.3
Q ss_pred CccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhh
Q 012829 30 CDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67 (455)
Q Consensus 30 C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC 67 (455)
|.+|++.. +.+|++|+.++|||++||+++|..|+.+|
T Consensus 1 C~~C~~~~-~~~C~~C~~~~YCs~~Cq~~~w~~Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKPA-LKRCSRCKSVYYCSEECQRADWPYHKFEC 37 (37)
T ss_dssp -TTTSSCS-SEEETTTSSSEESSHHHHHHHHHHHCCTH
T ss_pred CcCCCCCc-CCcCCCCCCEEecCHHHHHHHHHHHhhhC
Confidence 78888853 44999999999999999999999999887
No 8
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.84 E-value=3.1e-09 Score=98.94 Aligned_cols=80 Identities=24% Similarity=0.383 Sum_probs=63.7
Q ss_pred hccccccccCCCCcceeeecc-cccccCCCCCCCcEEEEeC-CEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhcc
Q 012829 161 ACNAHTICNSELRPLGTGLYP-VISIINHSCLPNAVLVFEG-RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238 (455)
Q Consensus 161 ~~N~~~i~~~~~~~~g~~lyp-~~s~~NHSC~PN~~~~~~~-~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~ 238 (455)
.-|-|+|+-+.....+ -|+. .++++||.|.|||.++-.| +++.|+++|||++|||||.-|++.+.. .
T Consensus 175 g~nDFSvmyStRk~ca-qLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs~fFG----------~ 243 (453)
T KOG2589|consen 175 GGNDFSVMYSTRKRCA-QLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGSGFFG----------E 243 (453)
T ss_pred cCCceeeeeecccchh-hheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecccccC----------C
Confidence 4577887655543333 3444 4789999999999998877 789999999999999999999998765 3
Q ss_pred CCeeeeccccCCC
Q 012829 239 YLFTCTCPRCIKL 251 (455)
Q Consensus 239 y~F~C~C~rC~~~ 251 (455)
-.-.|.|.-|...
T Consensus 244 ~N~~CeC~TCER~ 256 (453)
T KOG2589|consen 244 NNEECECVTCERR 256 (453)
T ss_pred CCceeEEeecccc
Confidence 3468999999886
No 9
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.77 E-value=1.4e-07 Score=82.88 Aligned_cols=128 Identities=16% Similarity=0.049 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
+.......+......|++++|+..+++++.+. +++.....++.+++.+|...|++++|++++++++.+.. .++.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~ 107 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHH
Confidence 34445566777788899999999999998752 34445567889999999999999999999999998643 3344
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 439 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l 439 (455)
.+..+|..+.++|.++..+|++++|+..+.+|+.+++..+|.+++.+.++..-|
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~ 161 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWL 161 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 566677777777777779999999999999999999999999997665554433
No 10
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.60 E-value=8.1e-07 Score=72.61 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..++..+..+...|++++|+..++.++.. +|.++....+...++.++...|++++|+.+++.++..+ |.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 34556677778899999999999888653 45666667778889999999999999999999888643 577
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHH
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 437 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~ 437 (455)
+.....++.+|.++..+|++++|+.++.++++. .|+++.+.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~ 117 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLAQK 117 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHHHh
Confidence 766777999999999999999999999999886 578877666543
No 11
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.50 E-value=8.6e-06 Score=69.09 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 384 (455)
+.+..+...|-.++..|++++|..+++.+..+ ++.-..-..+|+.++..+|+|++|++.+.+++. +.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-----L~ 99 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-----IK 99 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cC
Confidence 45666777788889999999999999887653 344455678899999999999999999998877 44
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 446 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~ 446 (455)
+++|.. ++++|..+...|+.++|++.++.|+.+-. ++|...++.++-+.+...+
T Consensus 100 ~ddp~~---~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 100 IDAPQA---PWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred CCCchH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHHHHHHHHHHHh
Confidence 688754 89999999999999999999999998662 6677777777777666554
No 12
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=5.2e-06 Score=70.82 Aligned_cols=116 Identities=12% Similarity=0.097 Sum_probs=94.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..++.++.+ +|.-..++..++.++..+|++++|+..+++++.. .|.+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~- 91 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASH- 91 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCC-
Confidence 3455677788899999999999888754 3445677888999999999999999999998873 3444
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
+..++++|.++..+|++++|+..+++|++ ..|+++.+..+..........
T Consensus 92 --~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-----~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 92 --PEPVYQTGVCLKMMGEPGLAREAFQTAIK-----MSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred --cHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999987 568888887777666655544
No 13
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.45 E-value=1.2e-06 Score=66.14 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 381 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~ 381 (455)
..+...+..+...|++++|++.+++++++ ...+++.|+.++.+..+++.++..+|++++|+++++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 44556677888999999999999999999 67789999999999999999999999999999999999999874
No 14
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.45 E-value=2.4e-07 Score=60.71 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 431 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~ 431 (455)
++..+.+||.++..+|++++|+.++++|+++.+..+|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 467899999999999999999999999999999999999993
No 15
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=4.9e-06 Score=76.93 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 384 (455)
..++.|..++..++..++|++|+..|.++++ +.|.++.+.. +=+.+|..+|.++.|++-|+.++.
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~-----l~P~nAVyyc---NRAAAy~~Lg~~~~AVkDce~Al~------- 143 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIE-----LDPTNAVYYC---NRAAAYSKLGEYEDAVKDCESALS------- 143 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCcchHHH---HHHHHHHHhcchHHHHHHHHHHHh-------
Confidence 4455666677778888999999999999986 5577776644 346789999999999999999988
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
..|...-.|-.||.+|..+|++++|+..|++|++| .|+.+.+++-+...+....+
T Consensus 144 -iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-----dP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 144 -IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-----DPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred -cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHhcC
Confidence 45777888999999999999999999999999984 57777666666555554443
No 16
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.38 E-value=1.6e-06 Score=93.90 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=116.9
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 393 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 393 (455)
......+|.+.++.+ .-+.+.+...+++..|+.+...+..|+..+...|++++|+.+++++..+.+++.|.+||.+...
T Consensus 939 gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 334456778888887 6677778888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHH
Q 012829 394 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 444 (455)
Q Consensus 394 l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~ 444 (455)
+.+|+...+..+....|...+.+|+.++...+|++||.+.-+..+++.+..
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~ 1068 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL 1068 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh
Confidence 999999999999999999999999999999999999999888766666633
No 17
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.35 E-value=5.5e-06 Score=73.01 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
+.......+..+...|++++|+..+++++.+. +..........+++.++...|++++|+.++++++...... +.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~ 107 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PS 107 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HH
Confidence 34455667777888899999999999987753 2233345678899999999999999999999988853211 11
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
.+..+|..+..+|.....+|++++|+..+.+|+++++...+.++.-+.+++.-+..+
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 164 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTT 164 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhc
Confidence 222334444555555555667889999999999999999998888888877766554
No 18
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.31 E-value=1.3e-05 Score=78.99 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=89.7
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
+...|..++..|++++|+..|.+++++ .|.+ ..++.+++.+|..+|++++|+..+++++.+. +.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-----P~~-- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNN---AELYADRAQANIKLGNFTEAVADANKAIELD-----PSL-- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCC--
Confidence 455677778899999999999999874 3333 4567889999999999999999999998852 334
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
+..++.+|.++..+|++++|+..+++|++ +.|+++.....+..+....
T Consensus 70 -~~a~~~lg~~~~~lg~~~eA~~~~~~al~-----l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 70 -AKAYLRKGTACMKLEEYQTAKAALEKGAS-----LAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHH
Confidence 45688999999999999999999999997 4577776666555554443
No 19
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.30 E-value=1.6e-05 Score=74.59 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=90.7
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829 318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 397 (455)
Q Consensus 318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 397 (455)
...|+|++|+..|+.++.. +|++.....++..|+.+|...|++++|+.++++++..+ |+||.....++++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~kl 223 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKV 223 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHH
Confidence 4468999999999888763 56777778889999999999999999999988877754 5899999999999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829 398 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 440 (455)
Q Consensus 398 a~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~ 440 (455)
|.++..+|++++|...|++.++.+ |+++........|.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y-----P~s~~a~~A~~rL~ 261 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY-----PGTDGAKQAQKRLN 261 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHHHHHh
Confidence 999999999999999999887633 66666666666553
No 20
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.24 E-value=4.4e-05 Score=71.02 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=99.3
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....|......|++++|+..++.++. .+|..+....+...|+.+|...+++++|+.++++.+..+ |.||
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~~ 103 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP 103 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCCC
Confidence 345667777889999999999999876 456677777888899999999999999999999988755 5999
Q ss_pred HHHHHHHHHHHHhhhcC---------------CcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829 389 LLGLQYYTCGKLEWFLG---------------DTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 449 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g---------------~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~ 449 (455)
.+...++.+|..+..++ +...+.+.+..--.+++.. |++++..+...+|..++..+...
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHH
Confidence 99999999998865554 2222333333333444444 78999999999999988776544
No 21
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=98.23 E-value=2.2e-05 Score=71.29 Aligned_cols=137 Identities=16% Similarity=0.262 Sum_probs=100.2
Q ss_pred CCcccCCCCCcCCHHHH--------HHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHH
Q 012829 284 KGFTCQQCGLVRSKEEI--------KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKL 355 (455)
Q Consensus 284 ~~~~C~~C~~~~~~~~~--------~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L 355 (455)
..|.|+.||........ +.+.+.+...+. ...+....++++|++.|..++-- ..+.++.+...+.+...+
T Consensus 47 ~V~vCP~CgyA~~~~~F~~l~~~~~~~i~~~i~~~~~-~~~~~~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~Lrl 124 (214)
T PF09986_consen 47 EVWVCPHCGYAAFEEDFEKLSPEQKEKIKENISSRWK-PRDFSGERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRL 124 (214)
T ss_pred eEEECCCCCCcccccccccCCHHHHHHHHHHHHhhcc-cCCCCCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHH
Confidence 45889999987654433 233333332222 11333344788999988877643 455667777888999999
Q ss_pred HHHHHhcccHHHHHHHHHHhhhhHHhhcCC-CCh----HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 356 IKILMELEDWKEALAYCQLTIPVYQRVYPQ-FHP----LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~-~hp----~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
|.+|..+|+-+....++++++..|++.|-. ..| .-...++-+|.+....|++++|..++.+.+..-.
T Consensus 125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 999999999988999999999999988752 232 3357888999999999999999999999876433
No 22
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.22 E-value=2e-06 Score=56.21 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
++.++.+|+.+|..+|+|++|+.++++++.++++++|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 356789999999999999999999999999999999999994
No 23
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.21 E-value=4.6e-05 Score=63.92 Aligned_cols=112 Identities=21% Similarity=0.294 Sum_probs=86.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
+...+..+...|++++|+..++++..+ +|. -...+..++..+..+|++++|..++++++.+ +|.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~ 83 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY-----DPY---NSRYWLGLAACCQMLKEYEEAIDAYALAAAL--------DPD 83 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCC
Confidence 455666777889999999998887654 233 3466778999999999999999999988774 233
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
....++.+|.++...|++++|++.++++++. .|+.+....+...+..+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEI-----CGENPEYSELKERAEAM 131 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ccccchHHHHHHHHHHH
Confidence 4556789999999999999999999999984 46666655555554443
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.18 E-value=1e-05 Score=81.21 Aligned_cols=95 Identities=22% Similarity=0.211 Sum_probs=79.8
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
.+.|..+...|+..+|+.-|.+++.+. +...+++++|+.+|+.+|.+++|..+++++++++ |..
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~ 387 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEF 387 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhh
Confidence 455677788899999999999998763 3446778899999999999999999999988854 777
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
+...++||.+|-.+|++++|+..|++|++|-
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 8888999999999999999999999988763
No 25
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.14 E-value=0.00014 Score=65.92 Aligned_cols=131 Identities=20% Similarity=0.207 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
...+...|...+..|++.+|+..++.+... .|.++...++...++.++...|+|.+|...+++.+..+ |.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PN 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 456778888899999999999999988753 57788888999999999999999999999988877644 47
Q ss_pred ChHHHHHHHHHHHHhhhcCC--------cHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829 387 HPLLGLQYYTCGKLEWFLGD--------TENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 449 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~--------~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~ 449 (455)
||.+...++.+|..+..+.+ ...+.+.+.....++... |+++++.+...+|.+++..+...
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998776532 122222222222333333 89999999999999998776543
No 26
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.03 E-value=7.5e-05 Score=69.20 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=91.0
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..+...+..+...|++++|+..+++++. ..|.++....++..++.++...|+|++|+..+++++... |++
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~ 103 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALES-----RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----PNH 103 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCC
Confidence 3445667777889999999999888865 346677777788999999999999999999999988643 467
Q ss_pred hHHHHHHHHHHHHhhhc--------CCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829 388 PLLGLQYYTCGKLEWFL--------GDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 439 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~--------g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l 439 (455)
|.+...++.+|.++... |++++|++.++++++. -|+++...+.+..+
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~~ 158 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKKRM 158 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHHHH
Confidence 77667788888888765 7889999999998764 46666655554443
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.99 E-value=5.5e-05 Score=76.12 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
.+.++.+.+..+..+|++++|..+|+++++. .+..+.+..+|+.+|-.+|++++|+..++.+|.|-
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------ 418 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------ 418 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------
Confidence 4566677777888888999999998888765 56677888889999999999999999888888753
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
|..+..+.++|..|-.+|+.++|...+.+|+.| .|-..|....|..+.
T Consensus 419 --P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 419 --PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIY 466 (966)
T ss_pred --chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHh
Confidence 777888888888888888888888888888765 244444444444443
No 28
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=97.99 E-value=3.4e-06 Score=86.53 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=58.3
Q ss_pred ccccccCCCCCCCcEEEEeCC----EEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccCCeeeeccccCCC
Q 012829 181 PVISIINHSCLPNAVLVFEGR----LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKL 251 (455)
Q Consensus 181 p~~s~~NHSC~PN~~~~~~~~----~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y~F~C~C~rC~~~ 251 (455)
....++||||.||+.....+. .+.++|+|||.+||||+..|.........+...+...+...|.|.+|...
T Consensus 404 ~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (480)
T COG2940 404 DVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHT 478 (480)
T ss_pred cccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCC
Confidence 346799999999999886543 68899999999999999999877654433567778899999999999873
No 29
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.96 E-value=0.00017 Score=60.23 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..+...|...+..|+|.+|++.++.+.. -.|..+..-++...|+.+|...++|++|+..+++-+. +-|.|
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~-----ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~h 80 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDT-----RYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTH 80 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh-----cCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCC
Confidence 3456677777889999999998887754 3566667778889999999999999999998888776 33699
Q ss_pred hHHHHHHHHHHHHhhhcCC---------------cHHHHHHHHHHHHhchhccCCCChhHHHHHH
Q 012829 388 PLLGLQYYTCGKLEWFLGD---------------TENAIKSMTEAVEILRITHGTNSPFMKELIL 437 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~---------------~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~ 437 (455)
|.+...++..|..++.+.. ..+|...+++-++ .. |+|++..+...
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~---~y--P~S~ya~dA~~ 140 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR---RY--PNSEYAADARK 140 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH---HC--cCChhHHHHHh
Confidence 9999999999999988765 3444444444433 33 67776666544
No 30
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.90 E-value=0.0002 Score=61.11 Aligned_cols=94 Identities=20% Similarity=0.135 Sum_probs=64.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
+..|...+..|++++|...++.++... ++......++..|+.++...|++++|+..+.. .+..+..
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~~ 117 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQ---------IPDEAFK 117 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---------ccCcchH
Confidence 345666777888888888888776531 22222234456688888888888888887643 1233445
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAV 418 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~ 418 (455)
+.....+|.++...|++++|+..|++|+
T Consensus 118 ~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 118 ALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5566778888888888888888888874
No 31
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.90 E-value=7.5e-05 Score=57.16 Aligned_cols=83 Identities=19% Similarity=0.203 Sum_probs=60.5
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829 320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 399 (455)
Q Consensus 320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 399 (455)
+|++++|+..++++++.... ++ -......++.+|..+|+|++|+.++++ +..- +.+ ....+.+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~---~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSN---PDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCH---HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCC---HHHHHHHHH
Confidence 57899999999999876422 22 233455689999999999999999888 2211 223 333445699
Q ss_pred HhhhcCCcHHHHHHHHHH
Q 012829 400 LEWFLGDTENAIKSMTEA 417 (455)
Q Consensus 400 l~~~~g~~~eA~~~l~~A 417 (455)
.+..+|++++|++.|++|
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999986
No 32
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=97.88 E-value=9.5e-06 Score=87.67 Aligned_cols=43 Identities=30% Similarity=0.532 Sum_probs=35.8
Q ss_pred cccccCCCCCCCcEE---EEeC-CEEEEEEecccCCCCeeEEeecCC
Q 012829 182 VISIINHSCLPNAVL---VFEG-RLAVVRAVQHVPKGAEVLISYIET 224 (455)
Q Consensus 182 ~~s~~NHSC~PN~~~---~~~~-~~~~v~a~r~I~~GeEi~isY~~~ 224 (455)
.+.++||||.|||.. ..+| .+++|.|.|+|.+|||||..|-..
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~ 985 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFP 985 (1005)
T ss_pred hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccc
Confidence 477999999999965 3345 469999999999999999999544
No 33
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=9.6e-06 Score=82.34 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=33.6
Q ss_pred ccccCCCCCCCcEE---EEeC-CEEEEEEecccCCCCeeEEeecCCC
Q 012829 183 ISIINHSCLPNAVL---VFEG-RLAVVRAVQHVPKGAEVLISYIETA 225 (455)
Q Consensus 183 ~s~~NHSC~PN~~~---~~~~-~~~~v~a~r~I~~GeEi~isY~~~~ 225 (455)
+-++||||+|||.+ +..| -++=+.|.|+|++|||||..|-...
T Consensus 194 aRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~r 240 (729)
T KOG4442|consen 194 ARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDR 240 (729)
T ss_pred HHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccccc
Confidence 45889999999975 2333 2456889999999999999995543
No 34
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.87 E-value=7.9e-05 Score=54.52 Aligned_cols=64 Identities=28% Similarity=0.431 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHh
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEI 420 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g-~~~eA~~~l~~A~~i 420 (455)
......++..+...|+|++|+.++.+++.. +|.-+..++++|.+++.+| ++++|+..+++|+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 345677899999999999999999999985 2444557999999999999 799999999999875
No 35
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.86 E-value=0.00037 Score=57.04 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=77.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
..++.|......|+.++|+.+|+++++. +.......++.-.++..+..+|++++|+.+.+..+. -+|.+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~----~~p~~~- 72 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE----EFPDDE- 72 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc-
Confidence 3466788888999999999999999762 344455667888899999999999999999988765 233311
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
..+.....+|..+.++|+.+||+..+-.++.
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1233345578899999999999999888775
No 36
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.00015 Score=66.79 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=88.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
+.+.|..++..|+|.+|...|...+.. .|+...+.++++.|+.++..+|++++|...+..++.-| |.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 566777788899999999999888764 47888899999999999999999999999988877744 47888
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
.--.|++||.++..+|+.++|...|++..+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 888899999999999999999999998876
No 37
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00021 Score=63.93 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..++.+|++..|...++++++. +|....++..++.+|...|+.+.|-+.+++++. -+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--------l~p 100 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--------LAP 100 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--------cCC
Confidence 3445677788889999998888888764 455566677778888888888888888888776 345
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
.-|..++|-|--+..+|++++|...+.+|+.
T Consensus 101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred CccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 5566666666666666666666666666654
No 38
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.78 E-value=8.3e-06 Score=74.30 Aligned_cols=44 Identities=36% Similarity=0.890 Sum_probs=40.9
Q ss_pred CccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhh
Q 012829 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVL 70 (455)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~ 70 (455)
..+|..|+.+.+..+|+.|+.+.||+++||+-+|-.|+--|+.+
T Consensus 319 ~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~HKK~C~~L 362 (396)
T KOG1710|consen 319 CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFIHKKVCSFL 362 (396)
T ss_pred cccccccCCCCccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 67888899888899999999999999999999999999999876
No 39
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.77 E-value=0.00013 Score=52.64 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=51.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 354 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 354 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.++..+...|+|++|+..+++++. .+|.-...++.+|.++..+|++++|+.++++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467889999999999999998877 33667788999999999999999999999999864
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.70 E-value=0.00091 Score=60.72 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=46.9
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
..+..+...|++++|+..+++++.. .|. ...+...++.++...|++++|.+++++++... +.++
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~--- 99 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEH-----DPD---DYLAYLALALYYQQLGELEKAEDSFRRALTLN-----PNNG--- 99 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----Ccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCH---
Confidence 3344455556666666666555432 122 22344455556666666666666665555421 1222
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
..++++|.++...|++++|++.++++++
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2344555555555555555555555554
No 41
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.69 E-value=0.0013 Score=62.73 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=93.3
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 393 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 393 (455)
|..+...+++++|...|.++.....+ . .+....+..+...+.+|... ++++|+.++++++.+|.. .......+..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~-~-~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~--~G~~~~aA~~ 116 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEK-L-GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE--AGRFSQAAKC 116 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH--CT-HHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh--cCcHHHHHHH
Confidence 34456778999999999999887665 2 23345567777777777666 999999999999999863 2344456889
Q ss_pred HHHHHHHhhhc-CCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829 394 YYTCGKLEWFL-GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 394 l~~La~l~~~~-g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
+.++|.++... |++++|+++|++|+++++..- ..-...+...++.++..++.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999999873 33345667777777655543
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.65 E-value=0.00058 Score=65.74 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
...+..+..+...|++++|+..+++++++ +|....++.+++.++...|++++|++.+++++++. |++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----P~~ 131 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-----PTY 131 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC
Confidence 34556677778889999999999888764 23345678889999999999999999999988732 344
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 430 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp 430 (455)
...++++|.++...|++++|+..+++|+++ .|++|
T Consensus 132 ---~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~ 166 (296)
T PRK11189 132 ---NYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDP 166 (296)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH
Confidence 456899999999999999999999999874 45555
No 43
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.64 E-value=0.0046 Score=52.63 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 384 (455)
++....+..+......++...+...++.+.. -+|+.+.-..+...++..+...|++++|...++.++.. .
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~ 78 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAK-----DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----A 78 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----C
Confidence 3444555556666677888887776666654 24556666777888999999999999999999987772 2
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 416 (455)
++.....+..+.||.++..+|++++|++.|..
T Consensus 79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 79 PDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45566678899999999999999999999855
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.60 E-value=0.0019 Score=58.61 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=72.8
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+..+...|++++|+..+++++.. +.++........++.++...|++++|..++.+++... +.++ .
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~---~ 170 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-----PQRP---E 170 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCCh---H
Confidence 344556778999999998888753 1233344556778999999999999999999987742 3333 3
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.+..+|.++...|++++|..++++++++
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5778999999999999999999999886
No 45
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.60 E-value=0.00059 Score=51.74 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=72.2
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
..+..+...|++++|+..++.+++.. |.+. .+...++.++...+++++|.+++..++... +.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~--- 68 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-----PDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELD-----PDNA--- 68 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-----CccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Ccch---
Confidence 34555667889999999988886542 2222 567788999999999999999998877742 2333
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..++.+|.++...|++++|..++.+++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 56788999999999999999999998764
No 46
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=97.57 E-value=0.00061 Score=74.55 Aligned_cols=119 Identities=18% Similarity=0.086 Sum_probs=106.9
Q ss_pred ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh
Q 012829 322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 401 (455)
Q Consensus 322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~ 401 (455)
....|...+-+++.+..-.++|.||.++.+..++..++...++++.|+.+.+.++...++++|+.+..++..+..+|.+.
T Consensus 1030 ~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~ 1109 (1236)
T KOG1839|consen 1030 NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLF 1109 (1236)
T ss_pred CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHH
Confidence 44455666667777767789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829 402 WFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 440 (455)
Q Consensus 402 ~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~ 440 (455)
.-.+++..|..+.+.+..|+...+|++|+-+++..+-+.
T Consensus 1110 ~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1110 ESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHH
Confidence 999999999999999999999999999999988665444
No 47
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.56 E-value=0.00025 Score=52.44 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=59.1
Q ss_pred HHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829 355 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 434 (455)
Q Consensus 355 L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~ 434 (455)
|..+|...++|++|++++++++.. +|.-...++..|.++..+|++++|...++++++ .+|+++....
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~-----~~p~~~~~~~ 67 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALE-----LSPDDPDARA 67 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH-----HCCCcHHHHH
Confidence 356889999999999999998885 344446688899999999999999999999994 5678877766
Q ss_pred HHHHH
Q 012829 435 LILKL 439 (455)
Q Consensus 435 ~~~~l 439 (455)
+..+|
T Consensus 68 ~~a~l 72 (73)
T PF13371_consen 68 LRAML 72 (73)
T ss_pred HHHhc
Confidence 66654
No 48
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.55 E-value=0.0027 Score=54.04 Aligned_cols=126 Identities=20% Similarity=0.224 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc-c-------------ccHHHHHHHHHHHHHhcccHHHHHHH
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-S-------------VNLMQTREKLIKILMELEDWKEALAY 371 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~-~-------------~~~~~~~~~L~~~~~~~g~~~~A~~~ 371 (455)
.++.+...+......|+...++..+++++.+...-+-+. . ...+.+...++..+...|++++|+.+
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 344444555555566778888888888888765533322 1 12233455667777889999999999
Q ss_pred HHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC-ChhHHHHHHHH
Q 012829 372 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKELILKL 439 (455)
Q Consensus 372 ~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~-hp~~~~~~~~l 439 (455)
+++++... |.--..+..+-.++...|+..+|...|++..+.+...+|.+ +|.+.++...|
T Consensus 85 ~~~~l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~i 145 (146)
T PF03704_consen 85 LQRALALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREI 145 (146)
T ss_dssp HHHHHHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred HHHHHhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHh
Confidence 99988732 33334456667789999999999999999999999999976 66666665543
No 49
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.52 E-value=0.00041 Score=68.54 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=65.0
Q ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 344 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 344 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.+|.....+.+++.+|...|+|++|+..+++++++ .|+++.....++++|..|..+|++++|+..|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777888999999999999999999999999985 3677766678999999999999999999999999997
No 50
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.52 E-value=0.0027 Score=57.22 Aligned_cols=95 Identities=7% Similarity=0.022 Sum_probs=73.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHH-Hhccc--HHHHHHHHHHhhhhHHhhcCCCC
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL-MELED--WKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~-~~~g~--~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
...+..+...|++++|+..|++++++ .|++ ...+..++.++ ...|+ .++|.+++++++.. .+.+
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-----dP~~ 143 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQL-----RGEN---AELYAALATVLYYQAGQHMTPQTREMIDKALAL-----DANE 143 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----CCCC
Confidence 33456677889999999999988764 3444 44556677764 66677 48999998888872 2444
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
+ ..++.||..+...|++++|+.+++++++..
T Consensus 144 ~---~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 144 V---TALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred h---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4 568999999999999999999999998854
No 51
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.48 E-value=0.0031 Score=58.29 Aligned_cols=122 Identities=18% Similarity=0.096 Sum_probs=88.2
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc--------ccHHHHHHHHHHhhhhHHh
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYCQLTIPVYQR 381 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~--------g~~~~A~~~~~~~l~~~~~ 381 (455)
....+..+...|++++|+..++++++. .|+++....++..++.++... |++++|+..+++++..+
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-- 145 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRL-----HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-- 145 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--
Confidence 345567778889999999999998763 466777666777788888765 88999999988887642
Q ss_pred hcCCCChHHH--------------HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829 382 VYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 446 (455)
Q Consensus 382 ~~g~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~ 446 (455)
| .++... ...+.+|.+++..|++.+|+..++++++.. |++|...+..-.+..+...+
T Consensus 146 --p-~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~l 216 (235)
T TIGR03302 146 --P-NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKL 216 (235)
T ss_pred --C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHc
Confidence 2 333221 123478899999999999999999998853 44566666665555554443
No 52
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0048 Score=59.88 Aligned_cols=109 Identities=14% Similarity=0.206 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhh--cccCCcc-----ccHHHHHHHHHHHHHhcccHHHHHHHHHHhh
Q 012829 304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQK--KLYHPFS-----VNLMQTREKLIKILMELEDWKEALAYCQLTI 376 (455)
Q Consensus 304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~--~~l~~~~-----~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l 376 (455)
..++....+.+..++..|+|..|...|++++.... ..+.+.- .....++.||+.+|..+++|.+|+..|.++|
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33444555667778889999999999999877532 2222221 1233467899999999999999999999988
Q ss_pred hhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 377 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 377 ~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
. ..+.|+ -.||.=|+++..+|+++.|+..+++|+++
T Consensus 285 e-----~~~~N~---KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 285 E-----LDPNNV---KALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred h-----cCCCch---hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 7 445554 66899999999999999999999999973
No 53
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.45 E-value=0.0019 Score=68.90 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=54.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..+...|++++|+..+++++++ .|.+ ..++..++.++...|++++|+.++++++.+. |..
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--------P~~ 432 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKL-----NSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--------PDF 432 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------ccC
Confidence 34455555666777777776666543 2333 2345566666677777777777766666531 222
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
...+.++|.++..+|++++|+..+++|+.
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33455566666666666666666666654
No 54
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.44 E-value=0.0063 Score=55.74 Aligned_cols=130 Identities=22% Similarity=0.306 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..+.+++...+..|++.+|...++.+.. -||..+..=++.-.++.++...+++++|+.+..+-+. .|| .|
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~-----~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~----lyP-~~ 104 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDS-----RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR----LYP-TH 104 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH----hCC-CC
Confidence 4556667777789999999999888753 5677777778888899999999999999988766555 444 89
Q ss_pred hHHHHHHHHHHHHhhhc-----CCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829 388 PLLGLQYYTCGKLEWFL-----GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 449 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~-----g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~ 449 (455)
|.+...++..|..+... .+...+...+....+++.+. |+++++.+...++..+...+-..
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHH
Confidence 99999999888887654 33445666666666666676 99999999999998887766543
No 55
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.44 E-value=0.0021 Score=71.25 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=75.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..+...|++++|+..+++++++ .|+++ .++.+++.++...|++++|++++++++.. .|++|
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~~-- 677 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALGYALWDSGDIAQSREMLERAHKG-----LPDDP-- 677 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH--
Confidence 33445555667777777777766653 33333 56677888888888888888888887763 23444
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
..++++|.++..+|++++|+..+++|+++- |+...+.+....+...
T Consensus 678 -~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-----P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 678 -ALIRQLAYVNQRLDDMAATQHYARLVIDDI-----DNQALITPLTPEQNQQ 723 (987)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCchhhhhhhHHHHH
Confidence 458888888999999999999988888754 5555555544444444
No 56
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.42 E-value=0.00099 Score=58.28 Aligned_cols=69 Identities=14% Similarity=-0.038 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
....+..++..+...|++++|+.++++++.+. ++++..+..++++|.++...|++++|+..+++|+.+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~ 102 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN 102 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34556778888999999999999999998863 4566677899999999999999999999999999873
No 57
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.40 E-value=0.0015 Score=52.99 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 429 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h 429 (455)
++...++..+...|++++|..++.+++... +.++.....++.+|.++...|++++|+.++++++.. .|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 356678889999999999999999887632 466666778899999999999999999999999864 3676
Q ss_pred hhHHHHHHHHHHHHHH
Q 012829 430 PFMKELILKLEEAQAE 445 (455)
Q Consensus 430 p~~~~~~~~l~~~~~~ 445 (455)
+.+..+...+..+..+
T Consensus 73 ~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 73 PKAPDALLKLGMSLQE 88 (119)
T ss_pred CcccHHHHHHHHHHHH
Confidence 6555555555554433
No 58
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.38 E-value=0.0023 Score=68.28 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=77.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..+...|++++|+..+++++.+ ++....++..++.++...|++++|+.++++++.. .+.+|
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~-- 399 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDP-- 399 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH--
Confidence 33455556789999999999988765 3445567778899999999999999999998774 34554
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..++.+|.++..+|++++|+..+++|+++
T Consensus 400 -~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 400 -DIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45889999999999999999999999875
No 59
>PRK15331 chaperone protein SicA; Provisional
Probab=97.36 E-value=0.0053 Score=52.54 Aligned_cols=116 Identities=10% Similarity=0.155 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 384 (455)
..+..+...|-.++.+|++++|..+++-+.. +.+.++.. ...|+.++..+++|++|+..+..+..+-
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-----~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~----- 101 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-----YDFYNPDY---TMGLAAVCQLKKQFQKACDLYAVAFTLL----- 101 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCcCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 3566677778888999999999999876643 55556544 4678999999999999999988766533
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH-HHHHHHHH
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE-LILKLEEA 442 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~-~~~~l~~~ 442 (455)
.+.|.. .+..|.-+..+|+.++|+..++-|++ .++|+.+++ ....|+.+
T Consensus 102 ~~dp~p---~f~agqC~l~l~~~~~A~~~f~~a~~------~~~~~~l~~~A~~~L~~l 151 (165)
T PRK15331 102 KNDYRP---VFFTGQCQLLMRKAAKARQCFELVNE------RTEDESLRAKALVYLEAL 151 (165)
T ss_pred cCCCCc---cchHHHHHHHhCCHHHHHHHHHHHHh------CcchHHHHHHHHHHHHHH
Confidence 344433 66779999999999999999999988 366666655 34444433
No 60
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.35 E-value=0.0037 Score=67.01 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=85.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..+++++++ .|.++ .++..++.++...|++++|+..+++++.. +|
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P 349 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLP---YVRAMYARALRQVGQYTAASDEFVQLARE--------KG 349 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cc
Confidence 3445567777889999999998888764 34443 45667899999999999999998877763 23
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 446 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~ 446 (455)
.....+..+|.++...|++++|+..|++|+++.-..+. +.+.+....+.+....+
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~---~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP---QSFEEGLLALDGQISAV 404 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch---hhHHHHHHHHHHHHHhc
Confidence 33334555688889999999999999999987666542 33345666666665544
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.34 E-value=0.0031 Score=67.33 Aligned_cols=92 Identities=11% Similarity=-0.016 Sum_probs=47.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...|......|.+++|+.+++.++++ .|+...++.+++.++...+++++|+..+++++.. .|.-
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~ 153 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSS 153 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCC
Confidence 33455556677777777777766653 2333444555555555555555555555544431 1222
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAV 418 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~ 418 (455)
+..++.+|+++..+|++++|+..|++++
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3334444444444444444444444444
No 62
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.34 E-value=0.004 Score=66.49 Aligned_cols=114 Identities=10% Similarity=-0.023 Sum_probs=86.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...+++++|+..+++++.. .|.-...+..++.++..+|++++|.+++++++. .||
T Consensus 122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p 185 (694)
T PRK15179 122 AFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHP 185 (694)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCC
Confidence 3445566777888999999988888753 455566778899999999999999999888776 445
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
.-...+..+|.++...|+.++|...|++|++.. |+....+.+.+.+|...
T Consensus 186 ~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~ 235 (694)
T PRK15179 186 EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI----GDGARKLTRRLVDLNAD 235 (694)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----CcchHHHHHHHHHHHHH
Confidence 556778899999999999999999999999853 33334444444444443
No 63
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.33 E-value=0.0046 Score=61.74 Aligned_cols=99 Identities=13% Similarity=0.042 Sum_probs=65.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC-
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH- 387 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h- 387 (455)
..+..+......|++++|+..++++++. .|. ...++..++.++...|++++|+.+++.++. .|...
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~ 103 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV-----DPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLS-----RPDLTR 103 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-----Ccc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-----CCCCCH
Confidence 3334455556677888888887777653 222 345566777788888888888887776654 12222
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
......+..||.++...|++++|+..+.++++.
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 136 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDE 136 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 233456777788888888888888888877653
No 64
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.32 E-value=0.0024 Score=56.15 Aligned_cols=71 Identities=13% Similarity=0.043 Sum_probs=60.8
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
++.....+..++..+...|++++|+.++++++... ++++..+..++++|.++..+|++++|+.++++|+++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556677889999999999999999999988853 344556778999999999999999999999999986
No 65
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.22 E-value=0.0042 Score=59.34 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=78.1
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-ccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
|......+++++|+..++++..+... .-.....+.+...++.+|... |++++|+++++++++.|+.-- ..-....
T Consensus 81 Aa~~~k~~~~~~Ai~~~~~A~~~y~~--~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~ 156 (282)
T PF14938_consen 81 AANCYKKGDPDEAIECYEKAIEIYRE--AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAE 156 (282)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHH--CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHH
Confidence 44444555888999999998887542 112334567889999999998 999999999999999998544 2234566
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
.+.++|.++..+|+|++|.+.+++.....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 77899999999999999999999987754
No 66
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.21 E-value=0.0077 Score=60.10 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
....++..+...|++++|..++++++.. .|.....++.+|.++...|++++|+.+++++++
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344555555555555555555555442 111223344555555555666666555555554
No 67
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.21 E-value=0.00069 Score=49.26 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=50.0
Q ss_pred HhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHH
Q 012829 360 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 438 (455)
Q Consensus 360 ~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~ 438 (455)
+..|+|++|++++++++... |.-...++.+|.++...|++++|+..+.+++. ..|++|.+..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~-----~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLK-----QDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG-----GGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCcCHHHHHHHHhc
Confidence 56799999999999988742 33345577899999999999999999888776 23556766666554
No 68
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.13 E-value=0.0017 Score=46.74 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=48.7
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY 379 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~ 379 (455)
.|..+...|++++|+..++.+++. +|.-..++..++.++..+|++++|+.++++++...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 466778899999999999888753 35567788899999999999999999999988643
No 69
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=97.04 E-value=0.00038 Score=68.78 Aligned_cols=44 Identities=25% Similarity=0.389 Sum_probs=36.0
Q ss_pred ccccCCCCCCCcEEEE--eCC------EEEEEEecccCCCCeeEEeecCCCC
Q 012829 183 ISIINHSCLPNAVLVF--EGR------LAVVRAVQHVPKGAEVLISYIETAG 226 (455)
Q Consensus 183 ~s~~NHSC~PN~~~~~--~~~------~~~v~a~r~I~~GeEi~isY~~~~~ 226 (455)
+-++||||.||+.+.. .+. .+.+.|+++|++|+|+|..|+....
T Consensus 273 ~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~ 324 (364)
T KOG1082|consen 273 ARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYK 324 (364)
T ss_pred cccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccccc
Confidence 4588999999998853 332 3678899999999999999987654
No 70
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.02 E-value=0.0083 Score=67.04 Aligned_cols=110 Identities=10% Similarity=0.091 Sum_probs=89.1
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+......|++++|...+++++..... .++.+. ...+...++.++...|++++|..++++++...+...++.++..+.
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~-~g~~~~-~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQ-HDVYHY-ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhh-hcchHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 344556789999999999888876543 333332 344667899999999999999999999999988877777777777
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
.+..+|.+++.+|++++|...+.+|+.+.+..
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 77889999999999999999999999987743
No 71
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.02 E-value=0.0051 Score=44.75 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc-cHHHHHHHHHHhhhh
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPV 378 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~ 378 (455)
......+..+...|++++|+..+++++.+ ++.-..++.+++.+|..+| ++++|+.++++++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34556677888999999999999999875 3334557889999999999 899999999998874
No 72
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.014 Score=51.37 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829 302 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ 380 (455)
Q Consensus 302 ~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~ 380 (455)
+...++..+..++..++..|+|.+|.+-|..++++.- +... ...-++.+=+.+.+.++.|+.|+.-|-++|++.
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp----~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~- 164 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCP----STSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN- 164 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCc----cccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-
Confidence 4455666777778888999999999999999988642 2221 122234566778899999999999999999843
Q ss_pred hhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 381 RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 381 ~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
|..--++..=|.+|....++++|+.-|++.+++
T Consensus 165 -------pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 165 -------PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred -------chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 444455556688999999999999998887653
No 73
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.98 E-value=0.0099 Score=63.78 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=72.8
Q ss_pred HHHHHHhhhcCChHH----HHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 311 SKKTLALTSCGNHQE----VVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~----a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
...+..+...|++++ |+..+++++++ .| ....++..++.++...|++++|+.++++++.. .|+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P---~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~ 316 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NS---DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPD 316 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC
Confidence 344566677788875 67778777764 23 34567788999999999999999999998873 344
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
++ ..+..+|.++...|++++|+..++++++.
T Consensus 317 ~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 317 LP---YVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred CH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 54 44677899999999999999999988874
No 74
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.97 E-value=0.0072 Score=66.64 Aligned_cols=103 Identities=18% Similarity=0.034 Sum_probs=74.2
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh-----------
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV----------- 378 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~----------- 378 (455)
+...|..+..+|++++|+..+++++.+ +|....++..++.+|..+|+|++|+.++++++..
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 96 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLL 96 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHH
Confidence 344566667788888888888777753 3334456777888888888888888888776542
Q ss_pred ----------------HHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 379 ----------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 379 ----------------~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
+....+...|..+..+..+|..+...|++++|+..+++|+++
T Consensus 97 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 154 (899)
T TIGR02917 97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI 154 (899)
T ss_pred HHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 122333455666777888888888889999999888888764
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.96 E-value=0.0065 Score=59.82 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=74.1
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH-HH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LG 391 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~ 391 (455)
.+..+...|++++|+..+++++++. |.+ ......++.++...|++++|..++++.+..... +|. ..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-----p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~ 186 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-----PDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRG 186 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhH
Confidence 3445667899999999999998752 333 345677899999999999999999998875542 233 34
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
..++.+|.++..+|++++|+..++++..
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5577899999999999999999999854
No 76
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=96.91 E-value=0.0015 Score=44.48 Aligned_cols=46 Identities=22% Similarity=0.451 Sum_probs=38.1
Q ss_pred cCccccCcC---CCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhhch
Q 012829 29 RCDGCFASS---NLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLD 74 (455)
Q Consensus 29 ~C~~C~~~~---~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~l~ 74 (455)
.|..|.... ..+.||.|+++.|||++=+..|..+|+.-|..++.+.
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~H~~~c~~LRqvN 49 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEEHRQLCERLRQVN 49 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHHHHHHHHHHHHHhc
Confidence 367777743 3689999999999999988888789999999998754
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=96.87 E-value=0.014 Score=61.36 Aligned_cols=91 Identities=15% Similarity=0.001 Sum_probs=58.9
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+..+...|++++|+..+++++++ .|++ ..++..++.++...|++++|+.++++++..- |.+|..
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P~~~~~-- 408 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLL-----SPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLD-----PTRAAA-- 408 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCChhh--
Confidence 344455677888888888887764 2333 3456677888888888888888888877632 334322
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
.+.++.++...|++++|+..++++++
T Consensus 409 -~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 409 -GITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred -HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 22233345557777777777777654
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.85 E-value=0.015 Score=52.32 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=75.2
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.|..+...|..+.|.+.|++++.+ ++.-.++++|-+.-+..+|++++|..++++++. -|.-+..+.
T Consensus 75 ~A~~Yq~~Ge~~~A~e~YrkAlsl--------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~ 140 (250)
T COG3063 75 RAHYYQKLGENDLADESYRKALSL--------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSD 140 (250)
T ss_pred HHHHHHHcCChhhHHHHHHHHHhc--------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcch
Confidence 355566778888899999988864 334455677888888889999999999888765 245566677
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
.+-|+|.....+|+.+.|+.+|++|+++.
T Consensus 141 t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 141 TLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred hhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 88999999999999999999999998743
No 79
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.84 E-value=0.015 Score=64.65 Aligned_cols=94 Identities=11% Similarity=0.076 Sum_probs=74.1
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829 319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 398 (455)
Q Consensus 319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La 398 (455)
..|++++|+..+++++++. | . ...+.+++.++...|++++|+..+++++.. .|+++ ..++++|
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~-----P---~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG 650 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIA-----P---S-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALG 650 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-----C---C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Confidence 3488888888888887542 2 2 456788899999999999999999988874 34555 5688999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829 399 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 434 (455)
Q Consensus 399 ~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~ 434 (455)
.++...|++++|+..+++|+++ .|+++....
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~ 681 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG-----LPDDPALIR 681 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 9999999999999999999884 577775544
No 80
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=96.84 E-value=0.0014 Score=67.28 Aligned_cols=88 Identities=22% Similarity=0.197 Sum_probs=62.1
Q ss_pred CHHHHHHHHhhhhccccccccC-----CCCcceeeecccccccCCCCCCCcEEEE-eCCEEEEEEecccCCCCeeEEeec
Q 012829 149 SINEIAENFSKLACNAHTICNS-----ELRPLGTGLYPVISIINHSCLPNAVLVF-EGRLAVVRAVQHVPKGAEVLISYI 222 (455)
Q Consensus 149 ~~~~i~~~~~~~~~N~~~i~~~-----~~~~~g~~lyp~~s~~NHSC~PN~~~~~-~~~~~~v~a~r~I~~GeEi~isY~ 222 (455)
+...+.-.++.+.+.+|.+... .....-.++.|..-+.||++.+.....+ .+..+.+++.++|.+||||+|+|+
T Consensus 198 ~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG 277 (472)
T KOG1337|consen 198 TFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYG 277 (472)
T ss_pred chHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecC
Confidence 3344455566666666654322 1223346799999999999999333332 344789999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCee
Q 012829 223 ETAGSTMTRQKALKEQYLFT 242 (455)
Q Consensus 223 ~~~~~~~~R~~~L~~~y~F~ 242 (455)
+... ..|...|||.
T Consensus 278 ~~~N------~eLL~~YGFv 291 (472)
T KOG1337|consen 278 PKSN------AELLLHYGFV 291 (472)
T ss_pred CCch------HHHHHhcCCC
Confidence 9544 5566799997
No 81
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.015 Score=58.63 Aligned_cols=112 Identities=16% Similarity=0.228 Sum_probs=83.7
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
+.+-..+..+.|.+|...++.++.....+.. ..+....+..+|+.+|..++.+++|+.+++++|... +.+ +
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-----~k~---~ 489 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-----PKD---A 489 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccc-cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-----CCc---h
Confidence 3344445567888999999888854444333 333566778899999999999999999999998733 333 3
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 437 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~ 437 (455)
..+-.+|-+|..+|.++.|++++.+|+.+ .|+...+.+++.
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~l-----~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALAL-----KPDNIFISELLK 530 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhc-----CCccHHHHHHHH
Confidence 44667788999999999999999999974 466666666554
No 82
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.83 E-value=0.045 Score=51.48 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=66.8
Q ss_pred HHHHHHHH-HHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829 351 TREKLIKI-LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 429 (455)
Q Consensus 351 ~~~~L~~~-~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h 429 (455)
..+..+.. +...|+|++|+..++..+..| |+++.....++.||.+++..|++++|...+++++..+ |+|
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s 213 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKS 213 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCC
Confidence 33444444 366799999999888877754 4677777889999999999999999999999988744 788
Q ss_pred hhHHHHHHHHHHHHHHH
Q 012829 430 PFMKELILKLEEAQAEA 446 (455)
Q Consensus 430 p~~~~~~~~l~~~~~~~ 446 (455)
|...+.+-++..+..++
T Consensus 214 ~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 214 PKAADAMFKVGVIMQDK 230 (263)
T ss_pred cchhHHHHHHHHHHHHc
Confidence 88888887776665443
No 83
>PRK12370 invasion protein regulator; Provisional
Probab=96.78 E-value=0.0055 Score=64.40 Aligned_cols=84 Identities=12% Similarity=0.040 Sum_probs=67.1
Q ss_pred CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHH
Q 012829 321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 400 (455)
Q Consensus 321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l 400 (455)
+++++|+..+++++++ .|++ ..++..++.++...|++++|+.++++++.. .|+++. .++.+|.+
T Consensus 318 ~~~~~A~~~~~~Al~l-----dP~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~~---a~~~lg~~ 381 (553)
T PRK12370 318 NAMIKAKEHAIKATEL-----DHNN---PQALGLLGLINTIHSEYIVGSLLFKQANLL-----SPISAD---IKYYYGWN 381 (553)
T ss_pred hHHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHH
Confidence 3467788777777654 3444 455667888999999999999999999874 455554 57889999
Q ss_pred hhhcCCcHHHHHHHHHHHHh
Q 012829 401 EWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 401 ~~~~g~~~eA~~~l~~A~~i 420 (455)
+..+|++++|+..+++|+++
T Consensus 382 l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999875
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.78 E-value=0.0021 Score=64.68 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=79.0
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
+...|+|+.|+.-|+.++. .-|++. .+.+.|+.++.+..+.++|+.-|++++.+. |...-+.|+
T Consensus 440 y~ls~efdraiDcf~~AL~-----v~Pnd~---~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyN 503 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQ-----VKPNDY---LLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYN 503 (579)
T ss_pred HhcchHHHHHHHHHHHHHh-----cCCchH---HHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehh
Confidence 4456788999988888865 335554 347789999999999999999999999855 444456899
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829 397 CGKLEWFLGDTENAIKSMTEAVEILRITHGTN 428 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 428 (455)
||..++++|-|+||.++|-.|+.+.++..+..
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~ 535 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHN 535 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999976644
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.77 E-value=0.032 Score=52.61 Aligned_cols=129 Identities=14% Similarity=0.177 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.+.+.+..++..|=++.|+.+|..+... ....-.++..|..+|-.-.+|++|++..++...+-.. ++..
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~ 177 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRV 177 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchh
Confidence 3444455666666666666665544321 0112245556666666666676666665554332111 2333
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHH---------------------------HHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKS---------------------------MTEAVEILRITHGTNSPFMKELILKLEE 441 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~---------------------------l~~A~~i~~~~~G~~hp~~~~~~~~l~~ 441 (455)
.+|.-+=.||+.+....+.+.|+.. +++|++.++...--++.++.++..+|.+
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 3444444444443333333332222 2223344444445788899999999999
Q ss_pred HHHHHhh
Q 012829 442 AQAEASY 448 (455)
Q Consensus 442 ~~~~~~~ 448 (455)
+..++..
T Consensus 258 ~Y~~lg~ 264 (389)
T COG2956 258 CYAQLGK 264 (389)
T ss_pred HHHHhCC
Confidence 9887654
No 86
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.70 E-value=0.025 Score=46.30 Aligned_cols=64 Identities=16% Similarity=0.013 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
+..+++.++-..|+.++|+.++++++. .|...+...-.+..+|..+..+|++++|+..|++++.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788899999999999999999987 3555566666788999999999999999999999875
No 87
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.64 E-value=0.0095 Score=68.30 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=65.8
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC--------
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-------- 385 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~-------- 385 (455)
+..+...|++++|+..+++++++ .|.+ ..++..|+.+|...|++++|+.++++++.......+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~-----~P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRA-----NPKD---SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 44455677788888777777664 2222 4556677777777788877777777776532211100
Q ss_pred --------------------------------CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 386 --------------------------------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 386 --------------------------------~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.+|.-...++.||.++..+|++++|+..+++|+++
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 01222345678899999999999999999999875
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.63 E-value=0.018 Score=52.68 Aligned_cols=91 Identities=21% Similarity=0.175 Sum_probs=72.6
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+......|++.+|+..++++..+ .|++ .+.+..++.+|...|++++|..-+.++++.. +..|.+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-----~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-----~~~p~~-- 170 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-----APTD---WEAWNLLGAALDQLGRFDEARRAYRQALELA-----PNEPSI-- 170 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-----CCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHhc-----cCCchh--
Confidence 344456789999999988888653 3333 4557778999999999999999999988843 355644
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
+.|||.++.-.|+++.|++++.+|..
T Consensus 171 -~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 171 -ANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred -hhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999999998864
No 89
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.62 E-value=0.036 Score=49.86 Aligned_cols=95 Identities=11% Similarity=0.063 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHH
Q 012829 321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 400 (455)
Q Consensus 321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l 400 (455)
++.++++..++..++. +|.-...+..|+.+|...|++++|+..+++++.. .|+++ ..+..+|.+
T Consensus 53 ~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~---~~~~~lA~a 116 (198)
T PRK10370 53 QTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENA---ELYAALATV 116 (198)
T ss_pred hhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHH
Confidence 3455666555555543 3444567888999999999999999999998873 34554 447788886
Q ss_pred h-hhcCC--cHHHHHHHHHHHHhchhccCCCChhHHHHH
Q 012829 401 E-WFLGD--TENAIKSMTEAVEILRITHGTNSPFMKELI 436 (455)
Q Consensus 401 ~-~~~g~--~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~ 436 (455)
+ ...|+ +++|...+++|++ ..|+++.....+
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~-----~dP~~~~al~~L 150 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALA-----LDANEVTALMLL 150 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHH-----hCCCChhHHHHH
Confidence 4 67777 5999999999987 356665544433
No 90
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.55 E-value=0.018 Score=54.76 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=71.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...|......|+.++|+..+++++++ .|.++. ++..++..+...|+++++.+........ . +.+|.+
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~---~~~~l~~~li~~~~~~~~~~~l~~~~~~----~-~~~~~~ 216 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALEL-----DPDDPD---ARNALAWLLIDMGDYDEAREALKRLLKA----A-PDDPDL 216 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HH---HHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHCCChHHHHHHHHHHHHH----C-cCHHHH
Confidence 34455667789999999999999874 344544 3556788888899998876655544332 2 344443
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI 436 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~ 436 (455)
+..+|.++..+|++++|..++++++. ..|++|.+...+
T Consensus 217 ---~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~~~~~ 254 (280)
T PF13429_consen 217 ---WDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLWLLAY 254 (280)
T ss_dssp ---CHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHHHHHH
T ss_pred ---HHHHHHHhcccccccccccccccccc-----cccccccccccc
Confidence 45678899999999999999999875 457777554433
No 91
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.46 E-value=0.015 Score=42.09 Aligned_cols=54 Identities=11% Similarity=0.074 Sum_probs=42.9
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhH
Q 012829 318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY 379 (455)
Q Consensus 318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~ 379 (455)
+..|++++|+..+++++.. +|.-..++..++.+|...|++++|..++.+++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4578999999999999764 34445567789999999999999999988877633
No 92
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=96.40 E-value=0.0017 Score=67.25 Aligned_cols=43 Identities=28% Similarity=0.351 Sum_probs=32.8
Q ss_pred ccccCCCCCCCcEE--EEeCC---E---EEEEEecccCCCCeeEEeecCCC
Q 012829 183 ISIINHSCLPNAVL--VFEGR---L---AVVRAVQHVPKGAEVLISYIETA 225 (455)
Q Consensus 183 ~s~~NHSC~PN~~~--~~~~~---~---~~v~a~r~I~~GeEi~isY~~~~ 225 (455)
+.++||||+||..+ +|.+. . +.+.|.+-|++|.|||..|.-..
T Consensus 1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~ 1240 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQ 1240 (1262)
T ss_pred hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccc
Confidence 56899999999987 34432 1 34667889999999999996543
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.39 E-value=0.017 Score=49.12 Aligned_cols=67 Identities=12% Similarity=-0.019 Sum_probs=54.8
Q ss_pred HHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829 354 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 433 (455)
Q Consensus 354 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~ 433 (455)
.++.++...|++++|+.++++++.. . |.-...++++|.++..+|++++|+..+++|+.+ .|+++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~-----~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a~ 95 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA-----Q---PWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHPEPV 95 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----C---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHH
Confidence 5688889999999999999998763 2 334466899999999999999999999999974 56665443
No 94
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.29 E-value=0.034 Score=60.92 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=72.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
+...|..+...|++++|+..+++++++ .|.++ .+...++.++...|++++|+.++++++.. .|.++.
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~---~a~~~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~~~ 118 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSL-----EPQND---DYQRGLILTLADAGQYDEALVKAKQLVSG-----APDKAN 118 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH
Confidence 344566677889999999999888764 23443 34457888899999999999998888764 234443
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
++.+|.++...|++++|+..+++|+++
T Consensus 119 ----~~~la~~l~~~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 119 ----LLALAYVYKRAGRHWDELRAMTQALPR 145 (765)
T ss_pred ----HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777899999999999999999998873
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.24 E-value=0.063 Score=60.04 Aligned_cols=111 Identities=15% Similarity=0.012 Sum_probs=85.2
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+......|++++|...+++++.+....-++.++....+...++.++...|++++|..++++++.+.+...+ +..
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~---~~~ 611 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP---QQQ 611 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc---hHH
Confidence 34456667889999999999998887655433333333444556788889999999999999999998774432 234
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
...+..+|.++...|++++|...+.++..+....
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 5667789999999999999999999998876553
No 96
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.20 E-value=0.061 Score=59.30 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
.++..++.+|...|++++|..++++++.
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4445566666666666666666666554
No 97
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=96.20 E-value=0.0036 Score=66.71 Aligned_cols=40 Identities=35% Similarity=0.601 Sum_probs=32.9
Q ss_pred ccccCCCCCCCcEEE---EeCC-EEEEEEecccCCCCeeEEeec
Q 012829 183 ISIINHSCLPNAVLV---FEGR-LAVVRAVQHVPKGAEVLISYI 222 (455)
Q Consensus 183 ~s~~NHSC~PN~~~~---~~~~-~~~v~a~r~I~~GeEi~isY~ 222 (455)
+-++||||.|||... .+|. ++.|.|+|||.+||||+..|-
T Consensus 1251 ~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN 1294 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYN 1294 (1306)
T ss_pred ccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecc
Confidence 457899999999653 3453 688999999999999999983
No 98
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.19 E-value=0.048 Score=51.49 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=74.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
..+.|.......+++.|+.++++++.- ++.-.++--.++.+++..|+|+.|++.++. +...++-.
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~-------v~eQn~~y 247 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALER-------VLEQNPEY 247 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHH-------HHHhChHH
Confidence 345566666777888999888888763 333344445578889999999999876554 55567777
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
++..+..|...|..+|+.++++..|.++++.
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 8888999999999999999999999998873
No 99
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.19 E-value=0.031 Score=64.14 Aligned_cols=91 Identities=15% Similarity=0.042 Sum_probs=46.1
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+..+...|++++|+..|++++++ .|.+ ..++..++.+|...|++++|++++++++.. .++++ .
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~-----~P~~---~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-----~p~~~---~ 672 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTR-----EPGN---ADARLGLIEVDIAQGDLAAARAQLAKLPAT-----ANDSL---N 672 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCCCh---H
Confidence 344455666777777777666653 2333 234555666666666666666665544331 11222 2
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
.+..+|.++..+|++++|+.++++++.
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 233344444444444444444444443
No 100
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.18 E-value=0.039 Score=60.25 Aligned_cols=92 Identities=8% Similarity=0.015 Sum_probs=42.8
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
..+.....+|++++|+..++++++. .|.++..+. .++.+++..|++++|+.++++++ .|. |.-.
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~-----~P~~~~av~---dll~l~~~~G~~~~A~~~~eka~------~p~--n~~~ 102 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKA-----GPLQSGQVD---DWLQIAGWAGRDQEVIDVYERYQ------SSM--NISS 102 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhh-----CccchhhHH---HHHHHHHHcCCcHHHHHHHHHhc------cCC--CCCH
Confidence 3444455667777777776666543 222211111 34444445555555555555444 111 1111
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
..+..+|.++..+|++++|++.|+++++
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2233334455555555555555555543
No 101
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.16 E-value=0.016 Score=61.91 Aligned_cols=92 Identities=11% Similarity=0.186 Sum_probs=73.8
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 393 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 393 (455)
+..+...|++.+|+.++.++.+-.. ....+.-|||.+|..+|+|..|++++...+ +++|+.+.+.+
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa~~--------~~~dv~lNlah~~~e~~qy~~AIqmYe~~l---kkf~~~~~~~v--- 718 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREATS--------DFEDVWLNLAHCYVEQGQYRLAIQMYENCL---KKFYKKNRSEV--- 718 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHh--------hCCceeeeHHHHHHHHHHHHHHHHHHHHHH---HHhcccCCHHH---
Confidence 4456677899999999988876432 223456689999999999999999999855 46777777766
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 394 YYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 394 l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
+.-||.+++..|++.+|...+.+|+.
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 77789999999999999999888775
No 102
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.15 E-value=0.083 Score=50.77 Aligned_cols=95 Identities=15% Similarity=0.014 Sum_probs=69.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..+.+++++ .|+ ...++.+++.++...|++++|++.+++++.. .|.+|
T Consensus 100 a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~---~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~ 166 (296)
T PRK11189 100 AYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPT---YNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDP 166 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH
Confidence 4455667778899999999999999875 233 3456788999999999999999999998863 35666
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..+.-+ .+....+++++|...+.++...
T Consensus 167 ~~~~~~----~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 167 YRALWL----YLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHH----HHHHccCCHHHHHHHHHHHHhh
Confidence 432211 2334567899999999776643
No 103
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=0.0042 Score=63.45 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
.-.++++.|+.+|.++++++.|.-+++++++| .|.-...+-.+|+++..+|+.++|+.++++|..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 33456778888888888888888888888774 355556677788888888999999988888874
No 104
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.14 E-value=0.0097 Score=37.26 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
.+.+||.++..+|++++|++++++|+.+-..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999866543
No 105
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.13 E-value=0.031 Score=54.80 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=84.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
.++....+..|++++|.+.|+.++. ++....+++.+++-.+-.+|+.++|++.+-++..++. ++
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~-----nn--- 557 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-----NN--- 557 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-----hh---
Confidence 3444455677899999999998875 3556778899999999999999999999888777664 33
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
+-.++.+|.+|..+.+...|+++|.+|..+ =|+.|. ++.+|.++.
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~---ilskl~dly 602 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPA---ILSKLADLY 602 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHH---HHHHHHHHh
Confidence 455888999999999999999999998764 377774 445555553
No 106
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.13 E-value=0.13 Score=50.14 Aligned_cols=127 Identities=16% Similarity=0.069 Sum_probs=96.0
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829 319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 398 (455)
Q Consensus 319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La 398 (455)
-.|+|+.|++.|+..+.+... ++. ...-+++.+.|+..|.-..++++|+.|..+-+.|...+-. -.--+-..|.||
T Consensus 247 flg~fe~A~ehYK~tl~LAie-lg~-r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLg 322 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIE-LGN-RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLG 322 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHH-hcc-hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHH
Confidence 347899999999988776543 232 2345678889999999999999999999988887765432 223356789999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhhhc
Q 012829 399 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLS 451 (455)
Q Consensus 399 ~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~~~ 451 (455)
..+..+|..++|+.+.++++++-.....+...+| ....|.+++.++....|
T Consensus 323 na~~alg~h~kAl~fae~hl~~s~ev~D~sgelT--ar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 323 NAFNALGEHRKALYFAELHLRSSLEVNDTSGELT--ARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh--hhhhhHHHHHHhCCCcc
Confidence 9999999999999999999999888877765544 34455666666655544
No 107
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.11 E-value=0.051 Score=40.64 Aligned_cols=62 Identities=26% Similarity=0.385 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
...++..+...|++++|+.++++++... | .++ ..++.+|.++...|++++|++.+++++++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~-~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD----P-DNA---DAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC----C-ccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4568888999999999999999887642 2 333 567889999999999999999999998853
No 108
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=96.10 E-value=0.0031 Score=57.64 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=37.8
Q ss_pred ccccCCCCCCCcEEE---EeCC-EEEEEEecccCCCCeeEEeecCCCCC
Q 012829 183 ISIINHSCLPNAVLV---FEGR-LAVVRAVQHVPKGAEVLISYIETAGS 227 (455)
Q Consensus 183 ~s~~NHSC~PN~~~~---~~~~-~~~v~a~r~I~~GeEi~isY~~~~~~ 227 (455)
.-++|||=.+|+... ++|. .+++.|.|||.+||||+..|+|-...
T Consensus 334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSke 382 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSKE 382 (392)
T ss_pred hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccchh
Confidence 568999999999753 4454 69999999999999999999997643
No 109
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.028 Score=56.64 Aligned_cols=119 Identities=14% Similarity=0.155 Sum_probs=87.5
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 395 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 395 (455)
++...|.+++|+..|..+-++ +.-.|.+.+- |+.-|+..++++.|..++.+++.+. |+.|. .+.
T Consensus 355 sfa~e~EhdQAmaaY~tAarl----~~G~hlP~LY----lgmey~~t~n~kLAe~Ff~~A~ai~-----P~Dpl---v~~ 418 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARL----MPGCHLPSLY----LGMEYMRTNNLKLAEKFFKQALAIA-----PSDPL---VLH 418 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHh----ccCCcchHHH----HHHHHHHhccHHHHHHHHHHHHhcC-----CCcch---hhh
Confidence 344556778888777666544 4444544332 5566888899999999999988865 46664 489
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhhhc
Q 012829 396 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLS 451 (455)
Q Consensus 396 ~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~~~ 451 (455)
.+|.+.+..+.+.+|.++++.|+ +...+.+++.+.+.-+...|..+...+.....
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l-~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKAL-EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHH-HHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 99999999999999999999999 44555677777777777777777666655443
No 110
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.07 E-value=0.012 Score=36.03 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
+..++++|.++..+|++++|+..+++|+++-
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3568999999999999999999999999864
No 111
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.03 E-value=0.022 Score=54.18 Aligned_cols=94 Identities=21% Similarity=0.290 Sum_probs=51.5
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+..+...|+.+++.++++...... |.++.+ ...++.+|..+|+.++|+.++++++. ..|.+|.+
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~---~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~-- 250 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-----PDDPDL---WDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLW-- 250 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH---CHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHH--
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH---HHHHHHHhcccccccccccccccccc-----cccccccc--
Confidence 3445667788888777666554432 445554 45688999999999999999999775 33566655
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
+..+|.++...|+.++|..+.++|+.-++
T Consensus 251 -~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 251 -LLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp -HHHHHHHHT--------------------
T ss_pred -ccccccccccccccccccccccccccccC
Confidence 67889999999999999999999987654
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.11 Score=52.34 Aligned_cols=111 Identities=19% Similarity=0.169 Sum_probs=86.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..++..|+|..|+..|-+++.. +|.-..++-|.+-+|..+|.+..|+.-+...++. +|..
T Consensus 362 r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~ 425 (539)
T KOG0548|consen 362 REKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNF 425 (539)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchH
Confidence 34566778889999999999887653 3555566778899999999999999999998886 7877
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
.-.|..-|.++..+.+|++|.+.+++|++.= |.-.++...+.++...
T Consensus 426 ~kgy~RKg~al~~mk~ydkAleay~eale~d--------p~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 426 IKAYLRKGAALRAMKEYDKALEAYQEALELD--------PSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chhHHHHHHHHHHHHH
Confidence 7778888999999999999999999998732 4445555555555443
No 113
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.15 Score=51.98 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=85.6
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh------------
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV------------ 378 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~------------ 378 (455)
+++|-..+..++.++|+..+. .+.+....+.+ -=++++..+|+|++|++.|+.++..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~--------~~~~~~~~ll~---L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK--------GLDRLDDKLLE---LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh--------cccccchHHHH---HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 356666666677777766544 22223333333 3467788899999999988876221
Q ss_pred -----------HHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829 379 -----------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 379 -----------~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
.....|..--..=-.+||.|.++...|+|.+|++.|++|++|-+.++-.+..---++...|.-++-++.
T Consensus 152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 111222211113356889999999999999999999999999999887776555667777777776665
Q ss_pred h
Q 012829 448 Y 448 (455)
Q Consensus 448 ~ 448 (455)
+
T Consensus 232 y 232 (652)
T KOG2376|consen 232 Y 232 (652)
T ss_pred H
Confidence 4
No 114
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.93 E-value=0.013 Score=55.14 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=60.0
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.|......+.+++|.++|+.+++ +|+.|+. +.-.++..|...++-+.|+.|+++++. .|..+|.+
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk-----~~~~nvE---aiAcia~~yfY~~~PE~AlryYRRiLq-----mG~~speL-- 360 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLK-----LHPINVE---AIACIAVGYFYDNNPEMALRYYRRILQ-----MGAQSPEL-- 360 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHh-----cCCccce---eeeeeeeccccCCChHHHHHHHHHHHH-----hcCCChHH--
Confidence 34444445566777777777765 3444543 333456666777777778888777665 56666655
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
+.|+|.-.+..++++-++..+++|+...+
T Consensus 361 -f~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 361 -FCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred -HhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 56677777777777777777777665544
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.91 E-value=0.046 Score=45.45 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
......++..+...|++++|..++++++.. .+.+ ...++.+|.++..+|++++|++.+++++++
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677888999999999999998887663 2333 466789999999999999999999999885
No 116
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.89 E-value=0.016 Score=35.31 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
-.++.+|.+++.+|++++|+..+++|+++-
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999999864
No 117
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.88 E-value=0.13 Score=56.43 Aligned_cols=108 Identities=7% Similarity=-0.128 Sum_probs=85.0
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
..+..+...|++++|+..+++++.. .|.+ ..++..++.++...|++++|++.+++++... |+++.
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~-----~P~n---~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-----Pd~~~-- 428 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYN-----APGN---QGLRIDYASVLQARGWPRAAENELKKAEVLE-----PRNIN-- 428 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCChH--
Confidence 3455666789999999998888654 3555 4577889999999999999999999888743 45554
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 440 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~ 440 (455)
.++.+|.++..+|++++|+..++++++ .-|+.|.+..+.+.++
T Consensus 429 -l~~~~a~~al~~~~~~~A~~~~~~ll~-----~~Pd~~~~~~~~~~~~ 471 (765)
T PRK10049 429 -LEVEQAWTALDLQEWRQMDVLTDDVVA-----REPQDPGVQRLARARD 471 (765)
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHH
Confidence 577888899999999999999999887 3478887777666654
No 118
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.077 Score=48.03 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=76.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
+.+....++...+|..|+.-|.+++.+ +|..+.-..+=+..++...+|+.+..-|++++.+ .|.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N 76 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN 76 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence 334444555566788999888777654 3333333445566788899999999999999884 477
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
.+...+.||........+++|++.|++|++.++..
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 78889999999999999999999999999877654
No 119
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.16 Score=49.68 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=82.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
..+.+...+.+|++..|.+.|..++.+ .|+|. ..+.++.+.+.+...+|+..+|+.-|..++.+ .+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~ 318 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DS 318 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CH
Confidence 334566678899999999999999864 45565 45577889999999999999999999998874 47
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
.....|..-|+.+..++++++|+..+++|++.-
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777888888999999999999999999999843
No 120
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.81 E-value=0.53 Score=37.93 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=76.3
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc--c--cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--V--NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~--~--~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.+......|-|++|..-++++....+.+=...- + .=+-++..|+.++..+|+|++++.-..++|.-+.+ -|.-|-
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR-RGEL~q 93 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR-RGELHQ 93 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-H--TTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh-cccccc
Confidence 345555678899999999999887654422221 1 12234567889999999999999998888875554 355565
Q ss_pred HHHHHH----HHHHHHhhhcCCcHHHHHHHHHHHHhchhccCC
Q 012829 389 LLGLQY----YTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 427 (455)
Q Consensus 389 ~~~~~l----~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~ 427 (455)
.-|..+ ++-|..+...|+.+||.+.++.|-+++..--|.
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 554433 445777888999999999999999988776664
No 121
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.80 E-value=0.094 Score=40.89 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=53.9
Q ss_pred HhcccHHHHHHHHHHhhhhHHhhcCCCC-hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 360 MELEDWKEALAYCQLTIPVYQRVYPQFH-PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 360 ~~~g~~~~A~~~~~~~l~~~~~~~g~~h-p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
...|||.+|++.+.+..+....-....+ -.....+.++|.++...|++++|+..+++|+++.+..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4579999999999998887665555442 2356778899999999999999999999999998887
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.75 E-value=0.044 Score=46.72 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=60.9
Q ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829 346 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 425 (455)
Q Consensus 346 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~ 425 (455)
...++..+.++..+...|++++|..+++-+.. ..|....-+++||.++..+|++++|+..|.+|..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 56677888899999999999999998876554 33555677999999999999999999999999873
Q ss_pred CCCChhH
Q 012829 426 GTNSPFM 432 (455)
Q Consensus 426 G~~hp~~ 432 (455)
.|++|..
T Consensus 99 ~~ddp~~ 105 (157)
T PRK15363 99 KIDAPQA 105 (157)
T ss_pred CCCCchH
Confidence 4666644
No 123
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.74 E-value=0.13 Score=38.17 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 384 (455)
....++...++.+.+.++|+..++++++.... .+....+...|+++|.+.|+|.+++++..+=+++.+..-.
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34455566677888889999999999876432 4467788889999999999999999998877777665443
No 124
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.061 Score=53.48 Aligned_cols=102 Identities=22% Similarity=0.225 Sum_probs=72.4
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 393 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 393 (455)
|..+.++++|++|++.|..+..+.. ..|-.++..+-..+....+..=.+++.+|+.+++++++ -.|.--..
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~-~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--------~Dpkce~A 539 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEP-REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--------LDPKCEQA 539 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhcc-ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--------cCchHHHH
Confidence 5567788999999999999887632 22222332222222111112223788999999999887 34666788
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 394 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 394 l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
+-.||++...+|+.++|+++++++....+..
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 8999999999999999999999998765543
No 125
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.55 E-value=0.092 Score=52.98 Aligned_cols=87 Identities=10% Similarity=-0.026 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHH--hhhhHHhhcCCCChHHHHHHHHHH
Q 012829 321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL--TIPVYQRVYPQFHPLLGLQYYTCG 398 (455)
Q Consensus 321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~--~l~~~~~~~g~~hp~~~~~l~~La 398 (455)
++...++...++.++ .+|.++. ...++.++.++...|+|++|.+++++ ++.. .|++ .. +..+|
T Consensus 313 ~~~~~~~~~~e~~lk-----~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-----~p~~-~~---~~~La 377 (409)
T TIGR00540 313 EDNEKLEKLIEKQAK-----NVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKE-----QLDA-ND---LAMAA 377 (409)
T ss_pred CChHHHHHHHHHHHH-----hCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----CCCH-HH---HHHHH
Confidence 344444444444433 3566664 45677789999999999999999884 4442 1222 22 33779
Q ss_pred HHhhhcCCcHHHHHHHHHHHHhch
Q 012829 399 KLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 399 ~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
.+++.+|+.++|..++++++..+-
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999877543
No 126
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.51 E-value=0.56 Score=42.29 Aligned_cols=127 Identities=17% Similarity=0.117 Sum_probs=85.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHhhh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----------EDWKEALAYCQLTIP 377 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-----------g~~~~A~~~~~~~l~ 377 (455)
..+..+......|++.+|+..++..+. .+|.|+.+-.+...++.++..+ +...+|...++..+.
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~-----~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIK-----LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH-----H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence 345567778889999999999988875 5788888888888888776543 233456666655554
Q ss_pred hHHhhcCCCChHHH--------------HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 378 VYQRVYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 378 ~~~~~~g~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
.|| +++.+. -.-+.+|+.|...|.+..|...++.+++ .. |+.+...+.+..|.+..
T Consensus 119 ----~yP-~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~---~y--p~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 119 ----RYP-NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE---NY--PDTPAAEEALARLAEAY 188 (203)
T ss_dssp ----H-T-TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH---HS--TTSHHHHHHHHHHHHHH
T ss_pred ----HCc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HC--CCCchHHHHHHHHHHHH
Confidence 455 444332 2333448888889999999888777665 33 67788888888888887
Q ss_pred HHHhhhh
Q 012829 444 AEASYKL 450 (455)
Q Consensus 444 ~~~~~~~ 450 (455)
.++.-+.
T Consensus 189 ~~l~~~~ 195 (203)
T PF13525_consen 189 YKLGLKQ 195 (203)
T ss_dssp HHTT-HH
T ss_pred HHhCChH
Confidence 7766554
No 127
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.48 E-value=0.039 Score=55.83 Aligned_cols=78 Identities=18% Similarity=0.094 Sum_probs=60.9
Q ss_pred CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC-CC--h-HHHHHHHH
Q 012829 321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-FH--P-LLGLQYYT 396 (455)
Q Consensus 321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~-~h--p-~~~~~l~~ 396 (455)
.+..+|++.|.+++.++ |..++++++|+..|+++|.|++|++|+..+|.+.++-... .- + ...+...+
T Consensus 478 ~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR 549 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR 549 (579)
T ss_pred cccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH
Confidence 36789999999999874 5678899999999999999999999999999999886552 22 2 34566666
Q ss_pred HHHHhhhcCC
Q 012829 397 CGKLEWFLGD 406 (455)
Q Consensus 397 La~l~~~~g~ 406 (455)
++.+.+..-+
T Consensus 550 ~als~~~~~D 559 (579)
T KOG1125|consen 550 LALSAMNRSD 559 (579)
T ss_pred HHHHHcCCch
Confidence 6655544433
No 128
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.088 Score=52.90 Aligned_cols=109 Identities=24% Similarity=0.213 Sum_probs=79.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
.++....++.|+|+.|+..|..++.+ -+++|+.. .+=..+|..+|+|++|+.-..+.+++ .|.-
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l----~p~nhvly----Snrsaa~a~~~~~~~al~da~k~~~l--------~p~w 69 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIML----SPTNHVLY----SNRSAAYASLGSYEKALKDATKTRRL--------NPDW 69 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHcc----CCCccchh----cchHHHHHHHhhHHHHHHHHHHHHhc--------CCch
Confidence 34556678999999999999888653 23344432 22345788899999999988887763 3666
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
+.-|+.+|..+..+|+|++|+..|.+.+++ -|....++.-|.++.
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAY 114 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhh
Confidence 788999999999999999999999998863 233345555555554
No 129
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.46 E-value=1.2 Score=36.72 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=87.8
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
-++..+...|+.+.|++.+.+++.+. |....++++=++++.-+|+-++|++-..++++. -|+--...-
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL----ag~~trtac 115 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALEL----AGDQTRTAC 115 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh----cCccchHHH
Confidence 34555667899999999999887653 233556778899999999999999999988873 343333344
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh----ccCCCChhHHHHHHHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRI----THGTNSPFMKELILKLEEAQAEA 446 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~----~~G~~hp~~~~~~~~l~~~~~~~ 446 (455)
..+..=|.+|..+|+.+.|..-+..|.++-.. -+=.-.|+..---+||.++..++
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f~ql 174 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAFDQL 174 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHHHhc
Confidence 66667799999999999999999998764221 11122455555556777776553
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.44 E-value=0.65 Score=44.45 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh
Q 012829 302 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 381 (455)
Q Consensus 302 ~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~ 381 (455)
....+...+...+......|++..+++....+++++. | + +..+..=+.+|..-|+...|+.-.+.+-.
T Consensus 150 ~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~--W---d---a~l~~~Rakc~i~~~e~k~AI~Dlk~ask---- 217 (504)
T KOG0624|consen 150 ALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP--W---D---ASLRQARAKCYIAEGEPKKAIHDLKQASK---- 217 (504)
T ss_pred HhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc--c---h---hHHHHHHHHHHHhcCcHHHHHHHHHHHHh----
Confidence 4455666777777788889999999998888887642 2 2 23344456788899999999887666544
Q ss_pred hcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHH
Q 012829 382 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 444 (455)
Q Consensus 382 ~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~ 444 (455)
+..++- -.+|+++++++..|+.+.+++.+++++. +.|+|...-....+|..+..
T Consensus 218 -Ls~DnT---e~~ykis~L~Y~vgd~~~sL~~iRECLK-----ldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 218 -LSQDNT---EGHYKISQLLYTVGDAENSLKEIRECLK-----LDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred -ccccch---HHHHHHHHHHHhhhhHHHHHHHHHHHHc-----cCcchhhHHHHHHHHHHHHH
Confidence 333443 3488999999999999999999998886 68998765554444444433
No 131
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.44 E-value=0.058 Score=52.46 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=78.7
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
++--|+|++|+..++.-+.+... +|. ....-++..+|+..++-.|+|+.|.++|++++.....+ | +--.-+..-|.
T Consensus 205 yYlLGdf~~ai~~H~~RL~ia~e-fGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g-~r~vEAQscYS 280 (639)
T KOG1130|consen 205 YYLLGDFDQAIHFHKLRLEIAQE-FGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-G-NRTVEAQSCYS 280 (639)
T ss_pred eeeeccHHHHHHHHHHHHHHHHH-hhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-c-chhHHHHHHHH
Confidence 34557899999888877766433 442 22334677889999999999999999999998866543 2 33445788899
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 397 CGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
||..|.-+.++++|+.|.++-+.|.+
T Consensus 281 LgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 281 LGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887754
No 132
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.36 E-value=0.033 Score=34.00 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
-.++.+|.++..+|++++|.+++++|+++-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 468899999999999999999999999864
No 133
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.34 E-value=0.075 Score=52.92 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 378 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 378 (455)
....+.+..++..|++++|+..|++++++ .|++.....++++++.+|..+|++++|++.++++++.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34456677788899999999999999875 3555555567899999999999999999999999986
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.31 E-value=0.14 Score=51.08 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=70.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
.+..|...+..|.+++|+..+..+++ ..|+|+.+..+ .+.+++..++.++|.+.+++++... |+.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~-----~~P~N~~~~~~---~~~i~~~~nk~~~A~e~~~kal~l~-----P~~-- 373 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIA-----AQPDNPYYLEL---AGDILLEANKAKEAIERLKKALALD-----PNS-- 373 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHH-----hCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHhcC-----CCc--
Confidence 34556666777788888887766554 45778877665 5677899999999999999988733 233
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
.+...++|..+...|++.+|+..|.+.+.
T Consensus 374 -~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 374 -PLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred -cHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 34567889999999999999998887654
No 135
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.31 E-value=0.039 Score=34.46 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQ 380 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~ 380 (455)
++.+|+.+|..+|+|++|++++++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 356899999999999999999999886554
No 136
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=0.034 Score=57.08 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=60.4
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
+--+++++.|++.+++++.+. +...-++.-++.-+....+|+.|..+++.++..--+.| -++|.
T Consensus 431 fSLQkdh~~Aik~f~RAiQld--------p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--------nAwYG 494 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQLD--------PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--------NAWYG 494 (638)
T ss_pred hhhhhHHHHHHHHHHHhhccC--------CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--------HHHHh
Confidence 344678888888888776542 22233344455666667788888888888877543333 45778
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 397 CGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
||.+|..+++++.|+-++++|++|
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcC
Confidence 888888888888888888877753
No 137
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=0.28 Score=50.00 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=74.9
Q ss_pred HHHhhhcCChHHHHHHHHHHHH--------------------H---hhcccCCccccHHHHHHHHHHHHHhcccHHHHHH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEK--------------------L---QKKLYHPFSVNLMQTREKLIKILMELEDWKEALA 370 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~--------------------~---~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 370 (455)
|..++..|+|+++..+|+.+.+ + ..+..+...-...+..+|.+.+++..|+|.+|++
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~e 196 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIE 196 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHH
Confidence 4445666777888777775522 0 0112233333466778899999999999999999
Q ss_pred HHHHhhhhHHhhcCCC------C-hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829 371 YCQLTIPVYQRVYPQF------H-PLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 418 (455)
Q Consensus 371 ~~~~~l~~~~~~~g~~------h-p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~ 418 (455)
+++.++.+..+-+-.. + -.+......|+-++..+|+.+||...|...+
T Consensus 197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999988776655421 1 1367778889999999999999999877644
No 138
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.35 Score=47.32 Aligned_cols=125 Identities=18% Similarity=0.251 Sum_probs=80.3
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH------hhcC---
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------RVYP--- 384 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~------~~~g--- 384 (455)
+..+...|+.++|+-.|+.+..+ -|..++++..|...|..+|++++|..+.+.++..+. .++|
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLV 412 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhccee
Confidence 33445556777777666666543 345677888999999999999999988877665443 2333
Q ss_pred -------------------CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 385 -------------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 385 -------------------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
.-.|...-.-..+|.++..-|++++++++|++++.++... .-|....+++....+.+..
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred eccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHHHHHHHHHhhhHHHH
Confidence 1223333344566888888899999999999998766433 2255555555444444333
Q ss_pred Hhh
Q 012829 446 ASY 448 (455)
Q Consensus 446 ~~~ 448 (455)
+++
T Consensus 491 m~~ 493 (564)
T KOG1174|consen 491 MEY 493 (564)
T ss_pred HHH
Confidence 333
No 139
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.04 E-value=0.18 Score=36.73 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=47.8
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
.+...+++++|+..++.++.+ +|. -...+...+.++..+|+|++|+..+.+++.. .|+++...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~-----~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-----~p~~~~~~ 66 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL-----DPD---DPELWLQRARCLFQLGRYEEALEDLERALEL-----SPDDPDAR 66 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh-----Ccc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCcHHHH
Confidence 346778999999998888764 344 3445667889999999999999999998863 34666543
No 140
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.97 E-value=0.32 Score=47.75 Aligned_cols=74 Identities=11% Similarity=0.010 Sum_probs=56.9
Q ss_pred cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 341 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 341 l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..+.++........++.++..+|++++|...+++++.. .|.+ ...+..+|.++...|++++|+.++++++..
T Consensus 106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 34566666667777888888899999999988888773 2333 455778899999999999999999988876
Q ss_pred ch
Q 012829 421 LR 422 (455)
Q Consensus 421 ~~ 422 (455)
..
T Consensus 178 ~~ 179 (355)
T cd05804 178 WD 179 (355)
T ss_pred cC
Confidence 54
No 141
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.88 E-value=0.39 Score=46.23 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=84.3
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCccccHH--HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc-CCCCh-HHHHHHH
Q 012829 320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLM--QTREKLIKILMELEDWKEALAYCQLTIPVYQRVY-PQFHP-LLGLQYY 395 (455)
Q Consensus 320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~--~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~-g~~hp-~~~~~l~ 395 (455)
.+-|+++++-++.+++.. +.+.-.++ ++.-.|+..+....|+++|+-+..+++++...+- +.+|. ...+.++
T Consensus 135 ls~fq~~Lesfe~A~~~A----~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly 210 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYA----HNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY 210 (518)
T ss_pred HHHHHHHHHHHHHHHHHh----hccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence 345667777777776543 33333333 4556788889999999999999999999887665 56666 4689999
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 396 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 396 ~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
.+++.+..+|+.-+|.++.++|.++.- .+|..-. ...-+..+.|+
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal-~~Gdra~-~arc~~~~aDI 255 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLAL-QHGDRAL-QARCLLCFADI 255 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH-HhCChHH-HHHHHHHHHHH
Confidence 999999999999999999999998654 4565433 33333334444
No 142
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.67 E-value=0.43 Score=50.95 Aligned_cols=100 Identities=18% Similarity=0.096 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829 304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 383 (455)
Q Consensus 304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 383 (455)
..+++.+..+|..++..|++++|..++..+... ++.-......|+.+|-.+|+.++|+.....+- .+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-----HL 202 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-----HL 202 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHH-----hc
Confidence 345677778888888999999999999888764 33334566778888988888888877644322 22
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 384 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 384 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
-|..+ -.+..+|.+...+|.+++|.-.+.+|++
T Consensus 203 ~p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 203 NPKDY---ELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred CCCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 22333 2245566666667777777776666664
No 143
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.65 E-value=0.6 Score=44.41 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=81.1
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc-cHHHHHHHHHHhhhhHHhh--cCCCCh----HHH
Q 012829 319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRV--YPQFHP----LLG 391 (455)
Q Consensus 319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~~~~--~g~~hp----~~~ 391 (455)
.+|+++-|...+.++..+.....+..-..+.+..++++......+ ++++|..+.++++++.+.. ....|| ...
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 568999999999888776543333334577788999999999999 9999999999999997551 113333 457
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 432 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~ 432 (455)
..+..|+..+...+..+...+ ..++++.++..+|. ||.+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~-~~~~ 123 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEK-ALNALRLLESEYGN-KPEV 123 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCC-CcHH
Confidence 778888999988887765444 55566666777764 4433
No 144
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.64 E-value=1.6 Score=43.95 Aligned_cols=104 Identities=8% Similarity=-0.069 Sum_probs=50.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+......|+++.|.+...+..+. .|. +. -..--.+.++..+|+++.|.+++.++.+ ..|.....+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~-----~~~-~~--~~~llaA~aa~~~g~~~~A~~~l~~a~~----~~p~~~l~~ 155 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADH-----AAE-PV--LNLIKAAEAAQQRGDEARANQHLEEAAE----LAGNDNILV 155 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhc-----CCC-CH--HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcCchHH
Confidence 44455556667777777666554332 111 11 1111344555666666666666665432 222222112
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 434 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~ 434 (455)
....+.++...|++++|...+++..+. +|+||.+..
T Consensus 156 ---~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~~~l~ 191 (409)
T TIGR00540 156 ---EIARTRILLAQNELHAARHGVDKLLEM-----APRHKEVLK 191 (409)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 122255566666666666655555442 355554433
No 145
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.62 E-value=0.46 Score=48.77 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=94.5
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
++..+......|+.++|++.++.+...+.. +..-+ .-....++..++.+++|++|.++..++.+.. .+ .
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~---~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-----~W--S 338 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLH---HLCYFELAWCHMFQHDWEEAAEYFLRLLKES-----KW--S 338 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHH---HHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-----cc--H
Confidence 456677778889999999999877643221 22111 2345678899999999999999988876622 23 4
Q ss_pred HHHHHHHHHHHhhhcCCc-------HHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDT-------ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~-------~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
.+...|..|..+..+|+. ++|.+++.++-....+.-|..-|.=+=+.++++.-..+
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhc
Confidence 678888899999999999 89999999999999998898888666677777665443
No 146
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.49 E-value=1.1 Score=39.48 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=71.6
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccH-HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~-~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
...|......+++++|+..++.++.. +.+-.+ .-+...|+.+...+|.+++|+...... .++--
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~---------~~~~w 157 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQ------TKDENLKALAALRLARVQLQQKKADAALKTLDTI---------KEESW 157 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHcc------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc---------ccccH
Confidence 34566677788888888777766532 112222 223456899999999999998864331 23333
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 437 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~ 437 (455)
.+.....-|.++...|+..+|.+.|.+|+... .+|..+++++
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~------~s~~~~~~lq 199 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESD------ASPAAREILQ 199 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc------CChHHHHHHH
Confidence 44455556999999999999999999999865 3444555544
No 147
>PLN03158 methionine aminopeptidase; Provisional
Probab=94.45 E-value=0.029 Score=55.82 Aligned_cols=38 Identities=26% Similarity=0.704 Sum_probs=30.5
Q ss_pred CCccCccccCcCCCcCCCCCC-------ccccCCHHHhHhhhhhhH
Q 012829 26 SISRCDGCFASSNLKKCSACQ-------VVWYCGSNCQKLDWKLHR 64 (455)
Q Consensus 26 ~~~~C~~C~~~~~~~~C~~C~-------~~~yCs~~C~~~~~~~H~ 64 (455)
....|..|.+.. ...|+.|. ..+|||++|.+.+|+.||
T Consensus 8 ~~~~c~~c~~~a-~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk 52 (396)
T PLN03158 8 SPLACARCSKPA-HLQCPKCLELKLPREGASFCSQDCFKAAWSSHK 52 (396)
T ss_pred CcccccCCCCcc-cccCccchhcCCCCCCceeECHHHHHHHHHHHH
Confidence 345699999875 48888883 278999999999998775
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.45 E-value=0.064 Score=40.69 Aligned_cols=50 Identities=16% Similarity=0.311 Sum_probs=40.3
Q ss_pred hcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829 361 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 361 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 416 (455)
++|+|++|+.++++++..... .+ -...++.+|.++...|++++|...+++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 368999999999998886543 23 445677799999999999999999988
No 149
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.37 E-value=0.29 Score=52.22 Aligned_cols=95 Identities=21% Similarity=0.213 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
..-+.+.|..++..|++.+|+.++..+... +.. ..+.....+|..|+.+|.+++|++++.+++.. -|+
T Consensus 414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~------~~~-~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-----~p~ 481 (895)
T KOG2076|consen 414 VDLYLDLADALTNIGKYKEALRLLSPITNR------EGY-QNAFVWYKLARCYMELGEYEEAIEFYEKVLIL-----APD 481 (895)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcC------ccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCC
Confidence 344566788888999999999887666431 111 11567788999999999999999999988873 345
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 416 (455)
|. .....|+.++..+|+.++|...+..
T Consensus 482 ~~---D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 482 NL---DARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred ch---hhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 54 4577889999999999976665544
No 150
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.29 E-value=0.54 Score=43.75 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 429 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h 429 (455)
......+..+...|+|++|.+.++.++. .+| ..|......+.||.++...+++++|+..+++.++.. |+|
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~ 102 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDN----RYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTH 102 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCC
Confidence 3345566777889999999999888776 344 557887889999999999999999999999988743 777
Q ss_pred hhHHHHHHHHH
Q 012829 430 PFMKELILKLE 440 (455)
Q Consensus 430 p~~~~~~~~l~ 440 (455)
|.+-.++=++.
T Consensus 103 ~~~~~a~Y~~g 113 (243)
T PRK10866 103 PNIDYVLYMRG 113 (243)
T ss_pred CchHHHHHHHH
Confidence 77765554444
No 151
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=1.9 Score=39.42 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc---cCCccccHHH-------HHHHHHHHHHhcccHHHHHHHHHHhh
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL---YHPFSVNLMQ-------TREKLIKILMELEDWKEALAYCQLTI 376 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~---l~~~~~~~~~-------~~~~L~~~~~~~g~~~~A~~~~~~~l 376 (455)
+..+..++..++..|+|.+|..-|+.++...+.+ --|..+...+ .+.|..+.+...|+|-+++++|..+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4456677888889999999999998776532221 2334443332 34567788888999999999998877
Q ss_pred hhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 377 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 377 ~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
. -||.-..+||.=|+.+...-...+|..-++++++
T Consensus 258 ~--------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 258 R--------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred h--------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 6 4566678899999999999999999999999887
No 152
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=94.25 E-value=0.015 Score=47.41 Aligned_cols=38 Identities=34% Similarity=0.885 Sum_probs=31.7
Q ss_pred CccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHH--hhHh
Q 012829 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRL--ECQV 69 (455)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~--EC~~ 69 (455)
..+|.-|++.....+||.|.++ |||-.| |+.|+. +|+.
T Consensus 5 t~tC~ic~e~~~KYKCpkC~vP-YCSl~C----fKiHk~tPq~~~ 44 (157)
T KOG2857|consen 5 TTTCVICLESEIKYKCPKCSVP-YCSLPC----FKIHKSTPQCET 44 (157)
T ss_pred eeeehhhhcchhhccCCCCCCc-cccchh----hhhccCCccccc
Confidence 4689999998778999999987 999999 467877 7753
No 153
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.25 E-value=0.2 Score=47.69 Aligned_cols=80 Identities=23% Similarity=0.146 Sum_probs=64.0
Q ss_pred HHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHhchh--ccCCCChhHHHH
Q 012829 359 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEILRI--THGTNSPFMKEL 435 (455)
Q Consensus 359 ~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g-~~~eA~~~l~~A~~i~~~--~~G~~hp~~~~~ 435 (455)
...+||++.|..++.++-.......|..--.++..+|++|+-....+ ++++|..++++|.++++. ..+..||...++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35679999999999988776664444455567999999999999999 999999999999999877 245677777665
Q ss_pred HHH
Q 012829 436 ILK 438 (455)
Q Consensus 436 ~~~ 438 (455)
+-.
T Consensus 83 r~~ 85 (278)
T PF08631_consen 83 RLS 85 (278)
T ss_pred HHH
Confidence 433
No 154
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.25 E-value=0.35 Score=48.63 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
.+..++.++...++|++|.+++++++.. +|.. ..+..||.++..+|+.++|..++++++...
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4555777778888888888887777763 1222 113356777888888888888888777654
No 155
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=1.1 Score=44.73 Aligned_cols=90 Identities=21% Similarity=0.094 Sum_probs=68.2
Q ss_pred cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 341 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 341 l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
+-|+++.+ ...|+..|...++.++|..-+.+++..-.. -+..++.||++|.+++++++|..++++-++.
T Consensus 427 ~kPnDsRl---w~aLG~CY~kl~~~~eAiKCykrai~~~dt--------e~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 427 LKPNDSRL---WVALGECYEKLNRLEEAIKCYKRAILLGDT--------EGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred cCCCchHH---HHHHHHHHHHhccHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44555543 456889999999999999988887764321 4688999999999999999999999999987
Q ss_pred chhccCCCChhHHHHHHHHHHH
Q 012829 421 LRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 421 ~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
. ..-|...|.+.....=|+.=
T Consensus 496 ~-~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 496 S-ELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred H-HhhcccchHHHHHHHHHHHH
Confidence 7 44477777666655555543
No 156
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=0.52 Score=47.16 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829 304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 383 (455)
Q Consensus 304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 383 (455)
..++.++-.++..++.+|+|++|+.-|..++.+. |+-+.. +.|.+..|...|+|++-.+.+.+++++
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epiF---YsNraAcY~~lgd~~~Vied~TkALEl----- 178 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPIF---YSNRAACYESLGDWEKVIEDCTKALEL----- 178 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCchh---hhhHHHHHHHHhhHHHHHHHHHHHhhc-----
Confidence 4556677778888899999999999999998764 222222 457888999999999999999999883
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829 384 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 428 (455)
Q Consensus 384 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 428 (455)
.|.....|+.=|..+..+|++.||+.-+ -++-|++---+..
T Consensus 179 ---~P~Y~KAl~RRA~A~E~lg~~~eal~D~-tv~ci~~~F~n~s 219 (606)
T KOG0547|consen 179 ---NPDYVKALLRRASAHEQLGKFDEALFDV-TVLCILEGFQNAS 219 (606)
T ss_pred ---CcHHHHHHHHHHHHHHhhccHHHHHHhh-hHHHHhhhcccch
Confidence 4777888999999999999999987543 2455555444443
No 157
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.05 E-value=0.38 Score=44.67 Aligned_cols=89 Identities=22% Similarity=0.141 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 431 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~ 431 (455)
.++.+--+...|+|.+|..-++.-+.-| |+++.++..+|=||..++.+|++++|...+..+..- =|+||-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 5666667778899999998877766644 588889999999999999999999999999888872 277888
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 012829 432 MKELILKLEEAQAEASYKL 450 (455)
Q Consensus 432 ~~~~~~~l~~~~~~~~~~~ 450 (455)
.-|.+-+|.....++...+
T Consensus 214 ApdallKlg~~~~~l~~~d 232 (262)
T COG1729 214 APDALLKLGVSLGRLGNTD 232 (262)
T ss_pred ChHHHHHHHHHHHHhcCHH
Confidence 8899999988887776554
No 158
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.03 E-value=1.1 Score=41.52 Aligned_cols=84 Identities=19% Similarity=0.142 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh-hhcCCcHHHHHHHHHHHHhchhccCC-CChhHHHHHHHHHHHH
Q 012829 366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE-WFLGDTENAIKSMTEAVEILRITHGT-NSPFMKELILKLEEAQ 443 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~-~~~g~~~eA~~~l~~A~~i~~~~~G~-~hp~~~~~~~~l~~~~ 443 (455)
++|...++.++.+.+..+||.||...-...+.+..+ .-+|+.++|..+.++|.+-.....+. +-..+.+....|+-++
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLr 222 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLR 222 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHH
Confidence 578889999999999999999998755555556655 45899999998877776555433331 1223677777777777
Q ss_pred HHHhhh
Q 012829 444 AEASYK 449 (455)
Q Consensus 444 ~~~~~~ 449 (455)
..+.-=
T Consensus 223 dNl~lW 228 (236)
T PF00244_consen 223 DNLTLW 228 (236)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766543
No 159
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.00 E-value=0.85 Score=43.63 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=64.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.+-+.+..++.+|+|++|+.-|.+..+ +.|+|+.+ ..+=+.+|..+..|..|..-|..++..-+.+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia-----~~P~NpV~---~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y------ 164 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIA-----VYPHNPVY---HINRALAYLKQKSFAQAEEDCEAAIALDKLY------ 164 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhc-----cCCCCccc---hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH------
Confidence 355677788999999999999887765 45666654 3345668999999999988888887754422
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
...|..=|..-..+|...||.+-++.+++
T Consensus 165 --~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 165 --VKAYSRRMQARESLGNNMEAKKDCETVLA 193 (536)
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHhHHHHHh
Confidence 22333334445556666777777666665
No 160
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.95 E-value=0.29 Score=49.20 Aligned_cols=98 Identities=5% Similarity=-0.032 Sum_probs=69.8
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh---------------
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV--------------- 378 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~--------------- 378 (455)
+......|++++|+..+++..+ ..|+|+.. ...++.+|...|+|++|++++.++...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~-----~~P~~~~a---l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a 231 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLE-----VAPRHPEV---LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA 231 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-----cCCCCHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3445678999999998877765 34666644 555788899999999999665554421
Q ss_pred H-------------------HhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 379 Y-------------------QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 379 ~-------------------~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
+ -+-+|..+|........+|..+...|+.++|.+.++++++
T Consensus 232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 232 WIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0 0123434444455567788999999999999999998876
No 161
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.76 E-value=0.15 Score=33.32 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 434 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~ 434 (455)
.++.+|.++..+|++++|++.|+++++ ..|++|....
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~-----~~P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA-----LDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCcCCHHHHH
Confidence 467899999999999999999999998 3567765443
No 162
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.69 E-value=1.1 Score=42.97 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
+++...+.+..+...|.+.+|+..|-.+.+. +|....+...=+.+|+.+|+-+-|+.-+.++|+.-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK------ 102 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK------ 102 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC------
Confidence 3444445566677888899999988877653 45555667777889999999988988877777644
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
|...-....=|.+++.+|++++|+.-+.+.++ +.|..-...+.+.+|+-+
T Consensus 103 --pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~-----~~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 103 --PDFMAARIQRGVVLLKQGELEQAEADFDQVLQ-----HEPSNGLVLEAQSKLALI 152 (504)
T ss_pred --ccHHHHHHHhchhhhhcccHHHHHHHHHHHHh-----cCCCcchhHHHHHHHHhH
Confidence 44444555668889999999999988887765 445555666666666554
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.64 E-value=0.38 Score=47.56 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=49.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 354 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 354 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..+..+...|+|++|++++++++.. .+.+ ...++++|.++..+|++++|+..+++|+++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l 65 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL-----DPNN---AELYADRAQANIKLGNFTEAVADANKAIEL 65 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456677889999999999999873 2344 456889999999999999999999999985
No 164
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.59 E-value=0.73 Score=44.09 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh
Q 012829 322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 401 (455)
Q Consensus 322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~ 401 (455)
++++|..+|+.+.. .+++ ...+...++.+.+.+|+|++|.+.+..++.. .+.+|. .+.|++.+.
T Consensus 182 ~~~~A~y~f~El~~----~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~~d---~LaNliv~~ 245 (290)
T PF04733_consen 182 KYQDAFYIFEELSD----KFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPNDPD---TLANLIVCS 245 (290)
T ss_dssp CCCHHHHHHHHHHC----CS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCHHH---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHh----ccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCCHH---HHHHHHHHH
Confidence 68899998887642 2333 2455677889999999999999998887652 245554 578899999
Q ss_pred hhcCCc-HHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829 402 WFLGDT-ENAIKSMTEAVEILRITHGTNSPFMKELILKLE 440 (455)
Q Consensus 402 ~~~g~~-~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~ 440 (455)
..+|+. +.+..++.+... ..|+||+++++..+-.
T Consensus 246 ~~~gk~~~~~~~~l~qL~~-----~~p~h~~~~~~~~~~~ 280 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQ-----SNPNHPLVKDLAEKEA 280 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHH-----HTTTSHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHH-----hCCCChHHHHHHHHHH
Confidence 999998 556666655333 3689999998875543
No 165
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.57 E-value=1.6 Score=47.34 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc--ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~--~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
+.+.+.|.-.+..|.+.+|...+..++.....+..+.. ..-+-+.++|+.++-..++++.|.+.|..++.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk-------- 524 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK-------- 524 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------
Confidence 34455666667888999999988888776433333332 22345689999999999999999999888776
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
.||.....+..||.+....+...+|..++..++.+ ...+|....++..+.-..
T Consensus 525 ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-----d~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 525 EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-----DSSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-----ccCCcHHHHHHHHHHHhh
Confidence 78888888999998888889999999999999874 456777777776554443
No 166
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=1.3 Score=44.18 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=65.6
Q ss_pred CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHH
Q 012829 321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 400 (455)
Q Consensus 321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l 400 (455)
.+...|++-|+.++++ +|-=.++.+.|+++|..++-..=|+-|+++++. +-|+.+.+ +..||+.
T Consensus 378 KNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~-----~kPnDsRl---w~aLG~C 441 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE-----LKPNDSRL---WVALGEC 441 (559)
T ss_pred cccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh-----cCCCchHH---HHHHHHH
Confidence 3456677777777664 333456778888888888877778888888876 33566654 6678999
Q ss_pred hhhcCCcHHHHHHHHHHHHhchh
Q 012829 401 EWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 401 ~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
|..+++.+||++-+.+|+..-..
T Consensus 442 Y~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHhccHHHHHHHHHHHHhcccc
Confidence 99999999999999999874433
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.47 E-value=1.1 Score=39.30 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
+.-...+..+...|++.||...|++++. .++..+ + .++-.++++....+++.+|...++++.+.-. -.-..|
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qals---G~fA~d-~---a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p-a~r~pd 161 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALS---GIFAHD-A---AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP-AFRSPD 161 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhc---cccCCC-H---HHHHHHHHHHHhhccHHHHHHHHHHHhhcCC-ccCCCC
Confidence 3444556667788999999999988864 333322 2 2344577888889999999887776544210 111222
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
+ +.-+|..+..+|++.+|+..++.|++
T Consensus 162 ~-----~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 162 G-----HLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred c-----hHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2 44458889999999999999999886
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.44 E-value=0.24 Score=46.48 Aligned_cols=60 Identities=12% Similarity=0.206 Sum_probs=52.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 378 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 378 (455)
.++|..+...|.++.|++-++.++.+ ++...+++..|+.+|..+|++++|++.++++|++
T Consensus 119 cNRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 119 CNRAAAYSKLGEYEDAVKDCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 35666777888999999998888875 6778899999999999999999999999999884
No 169
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.32 E-value=0.19 Score=30.51 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhhH
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIPVY 379 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~ 379 (455)
++..+++.+|..+|++++|+..+++++.+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467789999999999999999999998864
No 170
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.29 E-value=1.3 Score=48.09 Aligned_cols=90 Identities=16% Similarity=0.001 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch-hcc----
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR-ITH---- 425 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~-~~~---- 425 (455)
+...|+.++...|+++.|....+++++ .+|.+ ...|..|+.+|...|+.++|.+.+++..+.-- +..
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~-----~~p~~---~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYG-----MGPEK---LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhC-----CCCCC---CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 455666667777777777666555443 12333 23577888899999999999999887664321 111
Q ss_pred ------------C-CCChhHHHHHHHHHHHHHHHhh
Q 012829 426 ------------G-TNSPFMKELILKLEEAQAEASY 448 (455)
Q Consensus 426 ------------G-~~hp~~~~~~~~l~~~~~~~~~ 448 (455)
| ..||...++..+|.++..++..
T Consensus 568 i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred EEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 1 3599999999999999887754
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.17 E-value=0.26 Score=51.13 Aligned_cols=68 Identities=19% Similarity=0.075 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 429 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h 429 (455)
.++..++..+...|++++|..++++++..- |. ...+..+|+++...|++++|...+++|+. +.|.+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-----L~P~~ 486 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFN-----LRPGE 486 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCC
Confidence 456666777777899999999999998855 32 56888999999999999999999999987 45666
Q ss_pred hh
Q 012829 430 PF 431 (455)
Q Consensus 430 p~ 431 (455)
|.
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 63
No 172
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.7 Score=45.30 Aligned_cols=86 Identities=8% Similarity=0.054 Sum_probs=63.2
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
+|.++.+-..++..+..-|.+++++.++++.+..+ |.. .....||.+......+.+|..+|..|+.+
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--------~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---- 500 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--------PDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ---- 500 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--------ccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc----
Confidence 56677777788888888899999999988877754 222 23567899999999999999999999874
Q ss_pred cCCCChhHHHHHHHHHHHHHHHh
Q 012829 425 HGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 425 ~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
.|... ..++-|..+..+.+
T Consensus 501 -dP~~~---~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 501 -DPKSK---RTLRGLRLLEKSDD 519 (564)
T ss_pred -Cccch---HHHHHHHHHHhccC
Confidence 44444 44445555555444
No 173
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.09 E-value=0.21 Score=31.63 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
+++..|+.+-+..++|++|+.-+++++++.++++|+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567788999999999999999999999999999863
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=92.98 E-value=0.78 Score=45.71 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=61.0
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
+...++..+|+.+..+++.. .|.+ ...+...+..++..++++.|++.++++.... |.--..++.
T Consensus 210 ~l~~~~E~~AI~ll~~aL~~-----~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~ 273 (395)
T PF09295_consen 210 YLLMNEEVEAIRLLNEALKE-----NPQD---SELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQ 273 (395)
T ss_pred HHhcCcHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHH
Confidence 33445556666666666532 2222 5556667788899999999999999988844 555567889
Q ss_pred HHHHhhhcCCcHHHHHHHH
Q 012829 397 CGKLEWFLGDTENAIKSMT 415 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~ 415 (455)
||++|..+|++++|+-.+.
T Consensus 274 La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 274 LAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHhcCCHHHHHHHHh
Confidence 9999999999999987655
No 175
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.92 E-value=0.2 Score=30.24 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhhH
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIPVY 379 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~ 379 (455)
.+...++.++...|+|++|++++++++.+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456789999999999999999999998864
No 176
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=92.88 E-value=0.092 Score=53.96 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=33.2
Q ss_pred cccccCCCCCCCcEEE--E-eC-CEEEEEEecccCCCCeeEEeec
Q 012829 182 VISIINHSCLPNAVLV--F-EG-RLAVVRAVQHVPKGAEVLISYI 222 (455)
Q Consensus 182 ~~s~~NHSC~PN~~~~--~-~~-~~~~v~a~r~I~~GeEi~isY~ 222 (455)
.+-+.|||=.|||... + .| ..+-++|.|.|.+|||||..|.
T Consensus 665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeec
Confidence 4568899999999652 2 23 4577999999999999999994
No 177
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.71 E-value=1.1 Score=39.20 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=63.4
Q ss_pred cccHHHHHHHHHHHHHhcccH---HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCC----cHHHHHHHHHH
Q 012829 345 SVNLMQTREKLIKILMELEDW---KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD----TENAIKSMTEA 417 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~---~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~----~~eA~~~l~~A 417 (455)
+|.-.+.+++.+.++..+.++ .++.++.+.++.-++..+- -+|.....++.||..+..+|. ..+|..++++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 444466667777777766554 4577777777776665442 234444668888888876653 45677777777
Q ss_pred HHhchhc--cCCCChhHHHHHHHHHHH---HHHHhhh
Q 012829 418 VEILRIT--HGTNSPFMKELILKLEEA---QAEASYK 449 (455)
Q Consensus 418 ~~i~~~~--~G~~hp~~~~~~~~l~~~---~~~~~~~ 449 (455)
.+-+++. .-|+...++..+++-..+ ..|+...
T Consensus 100 ~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~ 136 (186)
T PF06552_consen 100 TEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777655 457788887766655443 4455433
No 178
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.61 E-value=2.1 Score=36.05 Aligned_cols=74 Identities=16% Similarity=0.077 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC-CCC
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFH 387 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~h 387 (455)
.+...+......|++++|+..++.++.+ +|.--.....++.+|...|+..+|++++++....+..-+| +.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 3344455567889999999998888764 3333445667899999999999999999999999988888 555
Q ss_pred hHH
Q 012829 388 PLL 390 (455)
Q Consensus 388 p~~ 390 (455)
|.+
T Consensus 136 ~~~ 138 (146)
T PF03704_consen 136 PET 138 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 179
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.32 E-value=7.7 Score=35.68 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=74.8
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCcccc---HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH-HH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN---LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GL 392 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~---~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~ 392 (455)
+....+|++|..-+.++.+- +++|.. -+..+...+........|.|+..+++++...|-..-. |.+ ++
T Consensus 41 fRnAk~feKakdcLlkA~~~-----yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs---pdtAAm 112 (308)
T KOG1585|consen 41 FRNAKKFEKAKDCLLKASKG-----YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS---PDTAAM 112 (308)
T ss_pred HHhhccHHHHHHHHHHHHHH-----HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC---cchHHH
Confidence 44445777776655554432 233333 3456667777778889999999999999998875544 444 34
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
.+-+-|++ .+.-+.++|+.+|++|+.+++.. |.+| ...++..++..+
T Consensus 113 aleKAak~-lenv~Pd~AlqlYqralavve~~-dr~~-ma~el~gk~sr~ 159 (308)
T KOG1585|consen 113 ALEKAAKA-LENVKPDDALQLYQRALAVVEED-DRDQ-MAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHH-hhcCCHHHHHHHHHHHHHHHhcc-chHH-HHHHHHHHhhhH
Confidence 55555664 45568899999999999998875 3333 344444444444
No 180
>PRK14574 hmsH outer membrane protein; Provisional
Probab=92.31 E-value=0.71 Score=50.66 Aligned_cols=86 Identities=21% Similarity=0.238 Sum_probs=52.2
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829 318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 397 (455)
Q Consensus 318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 397 (455)
...|+.++|+..++++. .|.+.. ...+..++.+|..+|+|++|+++++++++. .| ..|.+ +..|
T Consensus 79 ~~~G~~~~A~~~~eka~-------~p~n~~-~~~llalA~ly~~~gdyd~Aiely~kaL~~----dP-~n~~~---l~gL 142 (822)
T PRK14574 79 GWAGRDQEVIDVYERYQ-------SSMNIS-SRGLASAARAYRNEKRWDQALALWQSSLKK----DP-TNPDL---ISGM 142 (822)
T ss_pred HHcCCcHHHHHHHHHhc-------cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CC-CCHHH---HHHH
Confidence 34466667766665553 232322 233444566777788888888887777662 22 33433 3355
Q ss_pred HHHhhhcCCcHHHHHHHHHHHH
Q 012829 398 GKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 398 a~l~~~~g~~~eA~~~l~~A~~ 419 (455)
+.++...++.++|+..++++..
T Consensus 143 a~~y~~~~q~~eAl~~l~~l~~ 164 (822)
T PRK14574 143 IMTQADAGRGGVVLKQATELAE 164 (822)
T ss_pred HHHHhhcCCHHHHHHHHHHhcc
Confidence 7777777888777777666654
No 181
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=92.31 E-value=1.6 Score=40.16 Aligned_cols=99 Identities=16% Similarity=0.043 Sum_probs=68.1
Q ss_pred cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 341 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 341 l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.++.+..++.. ++...+..|+|.+|+...+++..+. |.. +-.++-+|.+|...|++++|...|.+|+++
T Consensus 95 ~~~~d~~ll~~---~gk~~~~~g~~~~A~~~~rkA~~l~-----p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L 163 (257)
T COG5010 95 AYPKDRELLAA---QGKNQIRNGNFGEAVSVLRKAARLA-----PTD---WEAWNLLGAALDQLGRFDEARRAYRQALEL 163 (257)
T ss_pred cCcccHHHHHH---HHHHHHHhcchHHHHHHHHHHhccC-----CCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence 44444444433 7778888999999999988877632 333 345788899999999999999999999985
Q ss_pred chhc--cCCCChhHHHHHHHHHHHHHHHhhhh
Q 012829 421 LRIT--HGTNSPFMKELILKLEEAQAEASYKL 450 (455)
Q Consensus 421 ~~~~--~G~~hp~~~~~~~~l~~~~~~~~~~~ 450 (455)
.-.. .=.++-+...+...+++++.-+.+-+
T Consensus 164 ~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 4332 11234444555566666666555544
No 182
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=5.7 Score=37.53 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=71.6
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHH---------------h
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL---------------T 375 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~---------------~ 375 (455)
..++......|++.++..++..+++.. |.+ ..+.-.++..|...|+.+.|...+.. -
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~-----~~~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~ 209 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAA-----PEN---SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ 209 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhC-----ccc---chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344556678889999998888887642 222 34455577778887877655443332 1
Q ss_pred hhhHHhh--cC---------CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh------------------ccC
Q 012829 376 IPVYQRV--YP---------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI------------------THG 426 (455)
Q Consensus 376 l~~~~~~--~g---------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~------------------~~G 426 (455)
++..++. .| ...|.-.-.-+.||+.+...|++++|.++|- .++++ .+|
T Consensus 210 i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll---~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 210 IELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL---ALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2222211 11 0122222446788999999999999988754 33333 356
Q ss_pred CCChhHHHHHHHHHH
Q 012829 427 TNSPFMKELILKLEE 441 (455)
Q Consensus 427 ~~hp~~~~~~~~l~~ 441 (455)
+.||.+...+++|..
T Consensus 287 ~~Dp~~~~~RRkL~s 301 (304)
T COG3118 287 PADPLVLAYRRKLYS 301 (304)
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666655543
No 183
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.22 E-value=0.25 Score=31.24 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 428 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 428 (455)
.+..||.+-...++|++|..-+++|++|.+..+.++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 577899999999999999999999999999988764
No 184
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.08 E-value=1.8 Score=38.02 Aligned_cols=104 Identities=11% Similarity=0.094 Sum_probs=72.5
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
.+.+.-+...|+.++|++.|.++..... +.-..+++.-+++.+.+..|+|.....+..++-...+.--+..-...
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3456667788999999999988766432 23456777888999999999999999999998887776221111111
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
...+. |..+...++|.+|-..+-.+..-+
T Consensus 115 lk~~~--gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYE--GLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHH--HHHHHHhchHHHHHHHHHccCcCC
Confidence 22222 445567899999988887776433
No 185
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=92.01 E-value=0.074 Score=31.69 Aligned_cols=28 Identities=29% Similarity=0.731 Sum_probs=20.3
Q ss_pred ccCccccCcCCCcCCCCCCccccCCHHHhH
Q 012829 28 SRCDGCFASSNLKKCSACQVVWYCGSNCQK 57 (455)
Q Consensus 28 ~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~ 57 (455)
..|..|.. .....|+.|+.. |||-+|.+
T Consensus 3 ~~C~vC~~-~~kY~Cp~C~~~-~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGN-PAKYRCPRCGAR-YCSLACYK 30 (30)
T ss_dssp EEETSSSS-EESEE-TTT--E-ESSHHHHH
T ss_pred CCCccCcC-CCEEECCCcCCc-eeCcEeEC
Confidence 46888888 567899999986 99999964
No 186
>PRK15331 chaperone protein SicA; Provisional
Probab=92.01 E-value=2.6 Score=36.31 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=60.3
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
....++..+..+.-+..+|++++|..+++-+.. |.++.|.. ++.||..+..++++++|+..|..|..+-..-
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-----~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-----YDFYNPDY---TMGLAAVCQLKKQFQKACDLYAVAFTLLKND 104 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCcCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 456677777888888999999999998775433 55666654 6899999999999999999999998876655
Q ss_pred cCC
Q 012829 425 HGT 427 (455)
Q Consensus 425 ~G~ 427 (455)
++|
T Consensus 105 p~p 107 (165)
T PRK15331 105 YRP 107 (165)
T ss_pred CCc
Confidence 555
No 187
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.80 E-value=1.2 Score=43.08 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=72.9
Q ss_pred ChHHHHHHHHHHHHHhhc-ccCCcc-ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829 322 NHQEVVSTYKMIEKLQKK-LYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 399 (455)
Q Consensus 322 ~~~~a~~~~~~~l~~~~~-~l~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 399 (455)
|+++|.-...++.++... .++.-| -+..-+.++++.++..+|..-.|.++|+.+..+.- -..+-+..+..+.-+|.
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal--~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL--QHGDRALQARCLLCFAD 254 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH--HhCChHHHHHHHHHHHH
Confidence 344454444445444322 123333 23445677899999999999999999999877542 33567777888999999
Q ss_pred HhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 400 LEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 400 l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
+|.+.|+.+.|..-|++|+.++.-.
T Consensus 255 IyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred HHHhcccHhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999887543
No 188
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.75 E-value=0.37 Score=31.44 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
+...++.+|..+|++++|.+.+++++.. -|++|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a 37 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEA 37 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHH
Confidence 4667999999999999999999998883 2466543
No 189
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.71 E-value=2.9 Score=33.43 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=62.3
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc--HHH-HHHHHH-HHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN--LMQ-TREKLI-KILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~--~~~-~~~~L~-~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.|..++..|++-+|+++.++..... .++.. ++. ....+. ..-....+-+-...|..-+++.+.+... -+|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h-----~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH-----GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc-----cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 4566788999999999988876542 22221 222 222222 1112334555566777777887776554 344
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.-|..++.||+-+-..--|++++..-++++.|
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 44888888888655555667777666666654
No 190
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=91.63 E-value=1.4 Score=46.33 Aligned_cols=118 Identities=13% Similarity=0.071 Sum_probs=78.7
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHHHHHHHH-----hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHH
Q 012829 286 FTCQQCGLVRSKEEIKKIASEVNILSKKTLA-----LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM 360 (455)
Q Consensus 286 ~~C~~C~~~~~~~~~~~~~~e~~~l~~~a~~-----~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~ 360 (455)
|.|.--.-..++.-..+.++-.......|.. ..++++|+++...++..+++ ++-...+...++.++.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAAL 530 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHH
Confidence 4454333344444444444333332333332 24567888988888887765 5666778888898999
Q ss_pred hcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 361 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 361 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
..++|+.|++.+..... +-|+| +-..+||+..|...|+..+|...+++|++
T Consensus 531 qlek~q~av~aF~rcvt-----L~Pd~---~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVT-----LEPDN---AEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHhhhHHHHHHHHHHhh-----cCCCc---hhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 99999999888776544 33455 67788998888888877777777777764
No 191
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=2.1 Score=39.74 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=32.9
Q ss_pred hhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 375 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 375 ~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
+.-+|+.+-+++.|- -..++.+|.++..+|+++||+..++.|++
T Consensus 192 AfyifeE~s~k~~~T-~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPT-PLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHHHHhcccCCC-hHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344555555545443 35678889999999999999999999883
No 192
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.35 E-value=0.26 Score=29.46 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.++++|.++..+|++++|+..+++.++-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5789999999999999999999998864
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=5.7 Score=37.50 Aligned_cols=117 Identities=13% Similarity=0.045 Sum_probs=78.0
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc---ccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
.+..++..|++..|...|..+.++ .++|+.+.-. ++.++..+ ..-.++..+.++++. .+|-.
T Consensus 162 Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~~g---~aeaL~~~a~~~~ta~a~~ll~~al~-------~D~~~ 226 (287)
T COG4235 162 LGRAYMALGRASDALLAYRNALRL-----AGDNPEILLG---LAEALYYQAGQQMTAKARALLRQALA-------LDPAN 226 (287)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHHHH---HHHHHHHhcCCcccHHHHHHHHHHHh-------cCCcc
Confidence 455677889999999999988764 3556655443 34444333 233456666555554 33333
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 449 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~ 449 (455)
+ -.++-||..+...|+|.+|...++.-++ ..-++.|-..-+...+.......+.+
T Consensus 227 i-ral~lLA~~afe~g~~~~A~~~Wq~lL~----~lp~~~~rr~~ie~~ia~~~~~~~~~ 281 (287)
T COG4235 227 I-RALSLLAFAAFEQGDYAEAAAAWQMLLD----LLPADDPRRSLIERSIARALAQRSAQ 281 (287)
T ss_pred H-HHHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCCCchHHHHHHHHHHHHhccccc
Confidence 2 4477789999999999999998887766 45677776666777776666655543
No 194
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.19 E-value=1.4 Score=45.63 Aligned_cols=115 Identities=17% Similarity=0.095 Sum_probs=79.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.++.++...+..+.|...+...+.++.. +|.|...+.+ .+-.+..+|+-++|.++.+..+. +.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k-----~~eHgeslAm---kGL~L~~lg~~~ea~~~vr~glr--------~d~ 72 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK-----FPEHGESLAM---KGLTLNCLGKKEEAYELVRLGLR--------NDL 72 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh-----CCccchhHHh---ccchhhcccchHHHHHHHHHHhc--------cCc
Confidence 4566677777777777777777777652 4566655443 34456678999999999888776 333
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
.-.+-+.-+|.++..-.+|++|++.|+.|+.+ +++. .+++..|.-++.+++
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-----~~dN---~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-----EKDN---LQILRDLSLLQIQMR 123 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHHHH
Confidence 33355667788999999999999999999984 4444 445555555544444
No 195
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=90.94 E-value=0.14 Score=50.70 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=66.6
Q ss_pred HhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829 374 LTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 449 (455)
Q Consensus 374 ~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~ 449 (455)
+++-+.++++|+.||.+.....--|-+|...|+++..++++.-|+++....+.|-+|.|...+..-.++.+-+-++
T Consensus 320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~mL~d 395 (615)
T KOG0508|consen 320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFMLQD 395 (615)
T ss_pred HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHhhh
Confidence 6788999999999999977666667789999999999999999999999999999999999888888776655444
No 196
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.83 E-value=1.3 Score=40.66 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=57.8
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 395 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 395 (455)
....+|+--+|++..-..+++ |..+ .++...|+.+|...|+|++|.--++.++-+- |..| ...-
T Consensus 129 ilka~GK~l~aIk~ln~YL~~----F~~D----~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-----P~n~---l~f~ 192 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDK----FMND----QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-----PFNP---LYFQ 192 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHH----hcCc----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-----CCcH---HHHH
Confidence 345677766777655444433 2211 3567889999999999999977777665422 3333 2234
Q ss_pred HHHHHhhhcC---CcHHHHHHHHHHHHhch
Q 012829 396 TCGKLEWFLG---DTENAIKSMTEAVEILR 422 (455)
Q Consensus 396 ~La~l~~~~g---~~~eA~~~l~~A~~i~~ 422 (455)
.+|.+++.+| .++-|.++|.+|+++-.
T Consensus 193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 193 RLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 4555555554 45668899999987644
No 197
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.81 E-value=0.55 Score=28.35 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIPVYQ 380 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~ 380 (455)
+++..++.+|...|++++|.+++++++++-+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567899999999999999999999988653
No 198
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.61 E-value=0.98 Score=43.00 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
-.++.+||+.+.-..||+..|..-++.++. ..+.-+-.++|||.+....|+.++|..+|..|.+..
T Consensus 394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 394 AADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 345566666666666777666665555443 445567889999999999999999999999887654
No 199
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.50 E-value=0.36 Score=27.75 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.++.+|.++...|++++|+..+++++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 5678999999999999999999999875
No 200
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.45 E-value=0.79 Score=37.70 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=49.9
Q ss_pred HHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 357 KILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
.+....|+.+.|++.+.+++... |..+..|++=|+.+.-+|+.++|..-|.+|+++.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 34567799999999999998854 6778889999999999999999999999999854
No 201
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.34 E-value=0.93 Score=41.20 Aligned_cols=90 Identities=17% Similarity=0.039 Sum_probs=67.4
Q ss_pred cccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh-hHHHHHHHHH
Q 012829 362 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP-FMKELILKLE 440 (455)
Q Consensus 362 ~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp-~~~~~~~~l~ 440 (455)
...+++|++-+..++..++ +.+..+-..|....++|=++..+|+.+....++++|++.++..+-.+.. ....-...+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 3567888888888887765 4455666899999999999999999999999999999999998765533 3333334455
Q ss_pred HHHHHHhhhhcc
Q 012829 441 EAQAEASYKLSS 452 (455)
Q Consensus 441 ~~~~~~~~~~~~ 452 (455)
-+.++|+.+.+.
T Consensus 169 YLigeL~rrlg~ 180 (214)
T PF09986_consen 169 YLIGELNRRLGN 180 (214)
T ss_pred HHHHHHHHHhCC
Confidence 566666665543
No 202
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.29 E-value=1 Score=34.67 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhH---------------HhhcCCCChHHHHHHHHHHHHh
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY---------------QRVYPQFHPLLGLQYYTCGKLE 401 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~---------------~~~~g~~hp~~~~~l~~La~l~ 401 (455)
+|.=..++..|+..+...|++++|++.+..++..- =.++|+.||.+....-+|+.++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence 44445778889999999999999999876644322 1467888998888888887765
No 203
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=90.17 E-value=2.9 Score=39.99 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=56.3
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
+...++.+.|.+.++...+ +.+ +..+.+....+...+...+.+.+|.-.++.+.+ .+| .....++.
T Consensus 141 ~L~~~R~dlA~k~l~~~~~-----~~e-D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~~----~t~~~lng 206 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQ-----IDE-DSILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KFG----STPKLLNG 206 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHC-----CSC-CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS------SHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh-----cCC-cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----ccC----CCHHHHHH
Confidence 4456788888877665532 222 233444444444344444578899888777543 233 23456889
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHH
Q 012829 397 CGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
+|.++..+|+++||++.+++|++
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999863
No 204
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=89.97 E-value=6.8 Score=39.45 Aligned_cols=108 Identities=17% Similarity=0.075 Sum_probs=67.7
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 395 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 395 (455)
.+...++..+|.+.+++++.+ .|+. .-...+++++|+..|+.++|+....+.+.- . |+.| .-+.
T Consensus 349 i~~~~nk~~~A~e~~~kal~l-----~P~~---~~l~~~~a~all~~g~~~eai~~L~~~~~~----~-p~dp---~~w~ 412 (484)
T COG4783 349 ILLEANKAKEAIERLKKALAL-----DPNS---PLLQLNLAQALLKGGKPQEAIRILNRYLFN----D-PEDP---NGWD 412 (484)
T ss_pred HHHHcCChHHHHHHHHHHHhc-----CCCc---cHHHHHHHHHHHhcCChHHHHHHHHHHhhc----C-CCCc---hHHH
Confidence 455667888999888888764 3443 334567999999999999998876664432 2 2333 3355
Q ss_pred HHHHHhhhc-----------------CCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 396 TCGKLEWFL-----------------GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 396 ~La~l~~~~-----------------g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
.||..|..+ |++++|+..+.+|.+ -.|.+.|.....-..+..++
T Consensus 413 ~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~----~~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 413 LLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ----QVKLGFPDWARADARIDQLR 473 (484)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hccCCcHHHHHHHHHHHHHH
Confidence 555555554 555555555555554 34566776666555554443
No 205
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=89.94 E-value=8.5 Score=35.66 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhchhc---cCCCChhHHHHHHHHHH
Q 012829 366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRIT---HGTNSPFMKELILKLEE 441 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~~~---~G~~hp~~~~~~~~l~~ 441 (455)
+.|.+.|+.++++...-+||.||.+.-...|.+..++ -+++.++|..+-++|.+-.... +..++ +++....++-
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~--y~dstlImqL 222 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEES--YKDSTLIMQL 222 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhh--hHHHHHHHHH
Confidence 5788889999998888899999986555555555554 5689999887766555433222 23333 5666666666
Q ss_pred HHHHHhh
Q 012829 442 AQAEASY 448 (455)
Q Consensus 442 ~~~~~~~ 448 (455)
++..+.-
T Consensus 223 LrDNL~l 229 (244)
T smart00101 223 LRDNLTL 229 (244)
T ss_pred HHHHHHh
Confidence 6665543
No 206
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.85 E-value=6.8 Score=36.03 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=58.5
Q ss_pred cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 341 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 341 l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
|.|+-..-...+...+..|....+|++|..-++++.+.+|.--..+|. +.++-..|.+.-...++.|++.++++|...
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA--AKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA--AKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444444445556666778888899999988888888888876666665 455666677777777777777777777766
Q ss_pred chhc
Q 012829 421 LRIT 424 (455)
Q Consensus 421 ~~~~ 424 (455)
+...
T Consensus 101 Y~E~ 104 (308)
T KOG1585|consen 101 YVEC 104 (308)
T ss_pred HHHh
Confidence 6544
No 207
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.75 E-value=0.38 Score=47.51 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHH------H-hhcccCCc--cc-cHHHHHHHHHHHHHhcccHHH
Q 012829 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEK------L-QKKLYHPF--SV-NLMQTREKLIKILMELEDWKE 367 (455)
Q Consensus 298 ~~~~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~------~-~~~~l~~~--~~-~~~~~~~~L~~~~~~~g~~~~ 367 (455)
+..+.+..++..+.++....-+.|++.+|++-.+.+-+ . +++.--|. |. .+..++.+|++-|-..
T Consensus 140 ek~kqle~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~n----- 214 (840)
T KOG2003|consen 140 EKCKQLEKEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEAN----- 214 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhh-----
Confidence 45677777888888877777777888888765433221 1 22222222 22 2234556666655444
Q ss_pred HHHHHHHhhhhHHhhcC-CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 368 ALAYCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 368 A~~~~~~~l~~~~~~~g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
++...++..|+.+.- ...|.-|...+++|.+++...++.+|+++|+-|++
T Consensus 215 --dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmald 265 (840)
T KOG2003|consen 215 --DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALD 265 (840)
T ss_pred --HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHh
Confidence 444444555554443 56677788888889999999999999998888775
No 208
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.74 E-value=1.2 Score=43.38 Aligned_cols=81 Identities=22% Similarity=0.208 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHhhhhccccccc----------cCCCCcceeeecccccccCCCCC-CCcEEEEeCCEEEEEEecccCCCC
Q 012829 147 EISINEIAENFSKLACNAHTIC----------NSELRPLGTGLYPVISIINHSCL-PNAVLVFEGRLAVVRAVQHVPKGA 215 (455)
Q Consensus 147 ~~~~~~i~~~~~~~~~N~~~i~----------~~~~~~~g~~lyp~~s~~NHSC~-PN~~~~~~~~~~~v~a~r~I~~Ge 215 (455)
.++.+.++.+.+.+..-+|.+- +.+-.+.|-..-|.+-++||.=. -|+...++++-+.++|.|+|++|+
T Consensus 173 ~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva~r~iekgd 252 (466)
T KOG1338|consen 173 RPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVADRNIEKGD 252 (466)
T ss_pred ccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccCcceeeeecCCCCCcc
Confidence 4667777777666555555441 12335678889999999999766 677778889999999999999999
Q ss_pred eeEEeecCCCCC
Q 012829 216 EVLISYIETAGS 227 (455)
Q Consensus 216 Ei~isY~~~~~~ 227 (455)
|+..+|+-..+.
T Consensus 253 ev~n~dg~~p~~ 264 (466)
T KOG1338|consen 253 EVDNSDGLKPMG 264 (466)
T ss_pred ccccccccCcch
Confidence 999999754443
No 209
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.71 E-value=2.2 Score=35.82 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 431 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~ 431 (455)
+..-+...+..|+|++|.+.++.+..- || ..|........||-+++..|++++|+..+++=++ +-|.||.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~r----yP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp~ 82 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTR----YP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHPN 82 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc----CC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCCC
Confidence 445566677889999998887765553 33 3333446688899999999999999998877665 3477876
Q ss_pred HHH
Q 012829 432 MKE 434 (455)
Q Consensus 432 ~~~ 434 (455)
+--
T Consensus 83 vdY 85 (142)
T PF13512_consen 83 VDY 85 (142)
T ss_pred ccH
Confidence 533
No 210
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=89.58 E-value=2.7 Score=44.44 Aligned_cols=91 Identities=21% Similarity=0.252 Sum_probs=64.9
Q ss_pred HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHH--HHHHhhhhHHhhcCCCChHHHH
Q 012829 315 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALA--YCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~--~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.....+|.+.+|.+.|..++. +.|+|+..+. .|+.++...|+-..|.. +...++. +++..| -
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~-----ldP~hv~s~~---Ala~~lle~G~~~la~~~~~L~dalr-----~dp~n~---e 755 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALA-----LDPDHVPSMT---ALAELLLELGSPRLAEKRSLLSDALR-----LDPLNH---E 755 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHh-----cCCCCcHHHH---HHHHHHHHhCCcchHHHHHHHHHHHh-----hCCCCH---H
Confidence 334455677777777666654 5677876654 57888888886655555 6666554 344444 4
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
.++.||++...+|+.++|...|+-|++.-
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 58999999999999999999999998753
No 211
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=89.53 E-value=0.31 Score=34.08 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=21.0
Q ss_pred CccCccccCcCCCcCCCCCCccccCCHHHhHhhhh
Q 012829 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWK 61 (455)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~ 61 (455)
..+|-+|+++.++- -.|||++|++..++
T Consensus 3 HkHC~~CG~~Ip~~-------~~fCS~~C~~~~~k 30 (59)
T PF09889_consen 3 HKHCPVCGKPIPPD-------ESFCSPKCREEYRK 30 (59)
T ss_pred CCcCCcCCCcCCcc-------hhhhCHHHHHHHHH
Confidence 47899999886532 35999999987544
No 212
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.49 E-value=3.8 Score=34.01 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH-HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829 347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 425 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~ 425 (455)
...++..+++.++....+-.+ -++-+.+++.+++..||. .-..+|-||.-++.+++|+++..++..-++ .
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~-----~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE-----T 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh-----h
Confidence 345667778887776655322 245567778888878885 356677889999999999999999887766 3
Q ss_pred CCCChhHHHHHHHHHHHHH
Q 012829 426 GTNSPFMKELILKLEEAQA 444 (455)
Q Consensus 426 G~~hp~~~~~~~~l~~~~~ 444 (455)
-|+.+...++.+.+++...
T Consensus 101 e~~n~Qa~~Lk~~ied~it 119 (149)
T KOG3364|consen 101 EPNNRQALELKETIEDKIT 119 (149)
T ss_pred CCCcHHHHHHHHHHHHHHh
Confidence 5788888999888887654
No 213
>PLN03077 Protein ECB2; Provisional
Probab=89.30 E-value=8.5 Score=42.90 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=71.5
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhh------------hhH-----
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI------------PVY----- 379 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l------------~~~----- 379 (455)
....|.++++..+++...... -..| -..++..+...+.+.|++++|.++.+++- ..+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~--gi~P----~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKY--SITP----NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHh--CCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 334566666666665554221 0111 12445556666666677666666655530 000
Q ss_pred --------HhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh-chh----------------ccC-CCChhHH
Q 012829 380 --------QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI-LRI----------------THG-TNSPFMK 433 (455)
Q Consensus 380 --------~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i-~~~----------------~~G-~~hp~~~ 433 (455)
++++. -.|.-+..+..|+.+|...|++++|.+..+.-.+. +++ .-| ..||.+.
T Consensus 673 ~e~~e~~a~~l~~-l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 673 VELGELAAQHIFE-LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred hHHHHHHHHHHHh-hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 00000 11222234667788999999999999876654421 111 112 4599999
Q ss_pred HHHHHHHHHHHHHhh
Q 012829 434 ELILKLEEAQAEASY 448 (455)
Q Consensus 434 ~~~~~l~~~~~~~~~ 448 (455)
++..+|+++..++..
T Consensus 752 ~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 752 EINTVLEGFYEKMKA 766 (857)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887763
No 214
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.08 E-value=0.68 Score=27.54 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVY 379 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~ 379 (455)
++..++.++...|++++|..++++++.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 56789999999999999999999887744
No 215
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=88.91 E-value=5.2 Score=41.04 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc-cCCCChhHHHHHHHHHHHHH
Q 012829 366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTNSPFMKELILKLEEAQA 444 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~-~G~~hp~~~~~~~~l~~~~~ 444 (455)
..+++++.+++...+++|+..|. .-|.-+|.-++..+++.+|+..+.+|.++++.. |+.+.. ++...+-++.+
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDe---EiYKEfleIAn 369 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDE---EIYKEFLEIAN 369 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGH---HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHH---HHHHHHHHHHH
Confidence 56899999999999999996664 446667888999999999999999999888776 765542 34444444433
Q ss_pred H
Q 012829 445 E 445 (455)
Q Consensus 445 ~ 445 (455)
+
T Consensus 370 e 370 (618)
T PF05053_consen 370 E 370 (618)
T ss_dssp T
T ss_pred H
Confidence 3
No 216
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.85 E-value=2.2 Score=29.20 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
.+|-||..+..+|+|++|..+...++++ -|+.+...++...+++-.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHH
Confidence 3678899999999999999998888873 488888888877777654
No 217
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.70 E-value=0.28 Score=30.14 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAI 411 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~ 411 (455)
+|.-...+++||.++...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3555577999999999999999996
No 218
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.62 E-value=9.2 Score=35.63 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=67.5
Q ss_pred ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh
Q 012829 322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 401 (455)
Q Consensus 322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~ 401 (455)
+..+|.-+|+....+ + +.+..+....+.+.+.+|+|++|..+.+.+|+-.- ..|.+ +-|+-.+.
T Consensus 188 k~qdAfyifeE~s~k----~----~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-----~dpet---L~Nliv~a 251 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK----T----PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-----KDPET---LANLIVLA 251 (299)
T ss_pred hhhhHHHHHHHHhcc----c----CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-----CCHHH---HHHHHHHH
Confidence 567777777766543 2 23345566788899999999999999888877432 33555 66676777
Q ss_pred hhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829 402 WFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 441 (455)
Q Consensus 402 ~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~ 441 (455)
..+|+-.++..-+-.-+ +..-|+||+++++.++=++
T Consensus 252 ~~~Gkd~~~~~r~l~QL----k~~~p~h~~vk~~~ekeae 287 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQL----KLSHPEHPFVKHLNEKEAE 287 (299)
T ss_pred HHhCCChHHHHHHHHHH----HhcCCcchHHHHHHHHHHH
Confidence 78888877654322222 2346999999988765444
No 219
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.21 E-value=2.6 Score=45.06 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=52.8
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829 318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 397 (455)
Q Consensus 318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 397 (455)
...|-.++|+.+|+++.+ ++-|-..|..+|.|.+|++..+. .+-..+-..||+-
T Consensus 811 ieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAET----------KDRIHLRNTYYNY 864 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHhh----------ccceehhhhHHHH
Confidence 445666777777777643 22234567889999999887543 2223445678888
Q ss_pred HHHhhhcCCcHHHHHHHHHH
Q 012829 398 GKLEWFLGDTENAIKSMTEA 417 (455)
Q Consensus 398 a~l~~~~g~~~eA~~~l~~A 417 (455)
|+-+...++.+.|+++|+++
T Consensus 865 A~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhc
Confidence 99888999999999999885
No 220
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.17 E-value=0.69 Score=28.34 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHH
Q 012829 345 SVNLMQTREKLIKILMELEDWKEAL 369 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~ 369 (455)
+|.-..++.+|+.+|...|++++|.
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4555667899999999999999986
No 221
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=87.84 E-value=2.1 Score=33.00 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHH----------------HhchhccCCCChhHHHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAV----------------EILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~----------------~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
.-..+.+|..+...|++++|++.|-+.+ ++++ .+|+.||.+....++|..+
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~-~lg~~~plv~~~RRkL~~l 88 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFE-LLGPGDPLVSEYRRKLASL 88 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHH-HcCCCChHHHHHHHHHHHH
Confidence 3668899999999999999999877644 3332 4689999999988888754
No 222
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=87.80 E-value=4 Score=43.23 Aligned_cols=78 Identities=13% Similarity=0.031 Sum_probs=59.2
Q ss_pred cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 341 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 341 l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
++|+|+ .+...|+.-|..+++.+.|++++++++.. -|.+|+. .+.-||.+.-..+++.+|++...-|++-
T Consensus 473 ~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l----~~~~~~~---~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 473 FDPTDP---LVIFYLALQYAEQRQLTSALDYAREALAL----NRGDSAK---AWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred cCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cCCccHH---HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 567777 45677888899999999999999998883 3566653 3555677888999999999998888875
Q ss_pred chhccCCC
Q 012829 421 LRITHGTN 428 (455)
Q Consensus 421 ~~~~~G~~ 428 (455)
...-||-.
T Consensus 543 ~~~N~~l~ 550 (799)
T KOG4162|consen 543 FGDNHVLM 550 (799)
T ss_pred hhhhhhhc
Confidence 55544433
No 223
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.69 E-value=0.56 Score=26.71 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~ 416 (455)
...+.||.++..+|+.++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3567899999999999999988763
No 224
>PLN03218 maturation of RBCL 1; Provisional
Probab=87.05 E-value=8.3 Score=43.83 Aligned_cols=90 Identities=12% Similarity=0.030 Sum_probs=45.4
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 395 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 395 (455)
.+...|++++|..++...... -+.|+ ..++..|+..|...|++++|.+++..+...-. | .-|. ...+.
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~---Gv~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~---g-i~PD-~vTyn 583 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSK---NVKPD----RVVFNALISACGQSGAVDRAFDVLAEMKAETH---P-IDPD-HITVG 583 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC---C-CCCc-HHHHH
Confidence 345567777777776655432 12222 23455566666666777777666665543210 0 0111 12344
Q ss_pred HHHHHhhhcCCcHHHHHHHHHH
Q 012829 396 TCGKLEWFLGDTENAIKSMTEA 417 (455)
Q Consensus 396 ~La~l~~~~g~~~eA~~~l~~A 417 (455)
.|...+...|++++|.+++++.
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4444455555555555555443
No 225
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=86.80 E-value=4.3 Score=40.52 Aligned_cols=92 Identities=12% Similarity=0.028 Sum_probs=67.8
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829 319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 398 (455)
Q Consensus 319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La 398 (455)
..++++.|+.+++++.+. ++. ....|+.++...++-.+|+++..+++. .+|.-+..+...|
T Consensus 181 ~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~~LL~~Qa 241 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDSELLNLQA 241 (395)
T ss_pred hcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCHHHHHHHH
Confidence 346788999888776543 122 223478888888888899999888883 2333367777889
Q ss_pred HHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829 399 KLEWFLGDTENAIKSMTEAVEILRITHGTNS 429 (455)
Q Consensus 399 ~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h 429 (455)
..+...++++.|++..++|..+.=-.+....
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~ 272 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELSPSEFETWY 272 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCchhHHHHH
Confidence 9999999999999999999987655554444
No 226
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=86.62 E-value=7 Score=38.32 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=52.1
Q ss_pred cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 341 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 341 l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.||+++ .....|+..|...+.|.+|..+++.++... +. +..+..+|.++..+|+..+|....++++..
T Consensus 323 ~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-----~s----~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 323 QHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKLR-----PS----ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 455556 445568888999999999999988776622 11 345777899999999999999999999843
Q ss_pred c
Q 012829 421 L 421 (455)
Q Consensus 421 ~ 421 (455)
.
T Consensus 391 ~ 391 (400)
T COG3071 391 T 391 (400)
T ss_pred h
Confidence 3
No 227
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=86.38 E-value=0.33 Score=49.44 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=39.3
Q ss_pred cceeeeccccc-ccCCCCCCCcEEEE----eCCEEEEEEecccCCCCeeEEeecCC
Q 012829 174 PLGTGLYPVIS-IINHSCLPNAVLVF----EGRLAVVRAVQHVPKGAEVLISYIET 224 (455)
Q Consensus 174 ~~g~~lyp~~s-~~NHSC~PN~~~~~----~~~~~~v~a~r~I~~GeEi~isY~~~ 224 (455)
.+-.+.+...| +.||||.||+.-.- ......+.|.+.|+.|+|+|.+|.-.
T Consensus 362 ~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~ 417 (463)
T KOG1081|consen 362 IIDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGN 417 (463)
T ss_pred ccccccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeecc
Confidence 44456666655 77999999998642 23457789999999999999999654
No 228
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.14 E-value=17 Score=36.24 Aligned_cols=113 Identities=15% Similarity=0.069 Sum_probs=68.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHH--HhcccHHHHHHHHHHhhhhHHh------
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL--MELEDWKEALAYCQLTIPVYQR------ 381 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~--~~~g~~~~A~~~~~~~l~~~~~------ 381 (455)
.++.+..++..++|..|..++..+... +++... .+.+..|+..| .+.-++++|.++++..+.....
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~ 207 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQERE 207 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHH
Confidence 345566677889999999998887653 333333 45566666666 4677888998888765542111
Q ss_pred --------------hcC------C--C--ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh----ccCCC
Q 012829 382 --------------VYP------Q--F--HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI----THGTN 428 (455)
Q Consensus 382 --------------~~g------~--~--hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~----~~G~~ 428 (455)
+.+ . . .+.+...++.-|.=-...|+|+.|+..+=+|++.+-. .||-+
T Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL~~~g~~ 282 (379)
T PF09670_consen 208 GLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRLARYGID 282 (379)
T ss_pred HHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 111 0 0 1223333333344444579999999988888765432 56644
No 229
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.00 E-value=1.9 Score=28.24 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=30.2
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829 394 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 440 (455)
Q Consensus 394 l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~ 440 (455)
.+.||..|...|+.+.|.+.|++.+. +.+-+.-.+...+|+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~------~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE------EGDEAQRQEARALLA 42 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH------cCCHHHHHHHHHHHh
Confidence 36789999999999999999998885 333444445555444
No 230
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.00 E-value=9.8 Score=29.38 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=55.1
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCc-cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 318 TSCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~-~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
...|++.+|++.+.+............ +.....+.-+++.+....|++++|+...+.++.+.+..- +...++..+.-
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~~ 86 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALSW 86 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHH
Confidence 356789999888777766544433333 223444566788899999999999999999999887543 34444555554
Q ss_pred HHHH
Q 012829 397 CGKL 400 (455)
Q Consensus 397 La~l 400 (455)
++.+
T Consensus 87 ~~~l 90 (94)
T PF12862_consen 87 LANL 90 (94)
T ss_pred HHHH
Confidence 4443
No 231
>PLN03218 maturation of RBCL 1; Provisional
Probab=86.00 E-value=15 Score=41.85 Aligned_cols=90 Identities=12% Similarity=-0.020 Sum_probs=53.2
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
+...|++++|.+++......... +.|+ ..++..|+..|.+.|++++|.++++.+... -. +.. ...+..
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~g-i~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~---gi-~p~---~~tyns 619 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHP-IDPD----HITVGALMKACANAGQVDRAKEVYQMIHEY---NI-KGT---PEVYTI 619 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCC-CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CC-CCC---hHHHHH
Confidence 44557788888877766542111 2222 245566777888888888888877765441 01 111 134555
Q ss_pred HHHHhhhcCCcHHHHHHHHHHH
Q 012829 397 CGKLEWFLGDTENAIKSMTEAV 418 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~~A~ 418 (455)
+...+...|++++|.+++.+..
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 5666666677777776666544
No 232
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=85.96 E-value=4 Score=44.93 Aligned_cols=63 Identities=13% Similarity=-0.026 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
++..||.+|-.+|++++|.+.+++++..- +.+ +..++++|-.+... ++++|+.++.+|+..+-
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n---~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDN---PEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-----ccc---HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 66778888999999999999888887743 444 45588888888888 99999999999887643
No 233
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=85.84 E-value=12 Score=41.49 Aligned_cols=102 Identities=10% Similarity=-0.084 Sum_probs=66.6
Q ss_pred HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh------------h
Q 012829 315 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR------------V 382 (455)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~------------~ 382 (455)
..+...+++++++.+++..++. +|..+..+.-++.++...+++.+|..+ .++.+... .
T Consensus 39 ~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 39 DAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHH
Confidence 3344678999999888766542 444455556666677777776666554 22222110 1
Q ss_pred cCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829 383 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 432 (455)
Q Consensus 383 ~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~ 432 (455)
.+ .++.--.+++.||..|-.+|+.++|...|++++++= |+++.+
T Consensus 109 i~-~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~~a 152 (906)
T PRK14720 109 IL-LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNPEI 152 (906)
T ss_pred HH-hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccHHH
Confidence 11 123333588999999999999999999999999854 666643
No 234
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.54 E-value=4.3 Score=40.06 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=66.2
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHH---------HHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR---------EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~---------~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
.++..++.+.++..+++.+. ++|.|...-.+. ..=+.-..+.|+|..|.+.+..+|.+- |.
T Consensus 212 ~~yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-----P~ 281 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALR-----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-----PS 281 (486)
T ss_pred ccccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC-----cc
Confidence 34455567777777777765 456655444332 222333456789999999999888843 33
Q ss_pred Ch-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 387 HP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 387 hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
|. -.+..|.+.|.+...+|+..+|+.-...|+.|
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 44 45788889999999999999999887777765
No 235
>PLN02789 farnesyltranstransferase
Probab=85.40 E-value=16 Score=35.50 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=49.7
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc-cHHHHHHHHHHhhhhHHhhcCCCC----------
Q 012829 319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQFH---------- 387 (455)
Q Consensus 319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~~~~~g~~h---------- 387 (455)
..+.+++|+.++.+++.+ .|.|+. +...-+.++..+| ++++|++++.+++....+-+..+|
T Consensus 49 ~~e~serAL~lt~~aI~l-----nP~~yt---aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 49 SDERSPRALDLTADVIRL-----NPGNYT---VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred cCCCCHHHHHHHHHHHHH-----CchhHH---HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 455777888877777654 233332 3333334444455 467777776666553322222111
Q ss_pred ------------------hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 388 ------------------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 388 ------------------p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
|.--..+...+-++..+|++++|+..+.+++++
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 111122333345555667777777777777664
No 236
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.33 E-value=4.7 Score=37.96 Aligned_cols=72 Identities=22% Similarity=0.193 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 429 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h 429 (455)
......+..|...|.+.+|..++++++. .||.--.....|-.++..+|+--+|.+++.+-.+.+++.+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~lt--------ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALT--------LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhh--------cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 3445567788899999999999999887 56766667777778899999999999999999999999999763
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.11 E-value=19 Score=36.59 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829 348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 416 (455)
...++..|+....++|+.++|+++.+.++.. +|.. ......++|...+..+++|.++...|.+
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke----~p~~--~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKE----FPNL--DNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhh----CCcc--chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3556778999999999999999999887753 2321 1234577888888999999988887766
No 238
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.07 E-value=12 Score=40.67 Aligned_cols=110 Identities=16% Similarity=0.108 Sum_probs=76.2
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh-
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP- 388 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp- 388 (455)
.-.|+...++.++++|..+..++.......-+...- ..+....--+.+....|+.++|+++.+.++. -+|++++
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~----~L~~~~~~ 494 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV----QLPEAAYR 494 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcccccch
Confidence 345777778889999988877665432211111111 1122222234556778999999999998776 4555555
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
.....+..+|.+.+-.|++++|..+.++|.++.+..
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 456788899999999999999999999999887664
No 239
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.04 E-value=5.6 Score=29.55 Aligned_cols=53 Identities=19% Similarity=0.051 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh--ccCCCChhHHH-HHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGTNSPFMKE-LILKLEEA 442 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~--~~G~~hp~~~~-~~~~l~~~ 442 (455)
.|..+...|.-.-..|++++|..+|++|++.+.. .+|...|..++ +..++.+-
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eY 60 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEY 60 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 3566777788888999999999999999999988 45533333343 34444433
No 240
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=84.90 E-value=3.4 Score=42.82 Aligned_cols=63 Identities=30% Similarity=0.297 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829 348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 418 (455)
Q Consensus 348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~ 418 (455)
++.+..-|++.|-..|++++|+++..++|+. .|...-.++.-|+++-..|++.+|...+.+|.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4577888999999999999999999999884 35555668888999999999999998877664
No 241
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.77 E-value=29 Score=34.30 Aligned_cols=82 Identities=15% Similarity=0.286 Sum_probs=58.0
Q ss_pred CHHHHHHHHH----HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCC---------------------ccccHHH
Q 012829 296 SKEEIKKIAS----EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP---------------------FSVNLMQ 350 (455)
Q Consensus 296 ~~~~~~~~~~----e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~---------------------~~~~~~~ 350 (455)
+++.+..++. .+.++...+.....+|+++.|.++.++++-..+..+|+ .|.....
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffl 104 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFL 104 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHH
Confidence 3444444443 36677778888889999999999988887654433332 3555566
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
+...-+......|-|.-|+++++-++.
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLls 131 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLS 131 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 677777788889999999999887544
No 242
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=84.42 E-value=0.56 Score=46.57 Aligned_cols=71 Identities=6% Similarity=0.099 Sum_probs=59.3
Q ss_pred HHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh
Q 012829 332 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW 402 (455)
Q Consensus 332 ~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~ 402 (455)
+++-+++++++|+|+++.-...--+.+|.++|+++.++++...+++...+.+-|-+|.++..+...|.+..
T Consensus 320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 45567788999999887654434455789999999999999999999999999999999999988887754
No 243
>PRK10941 hypothetical protein; Provisional
Probab=83.54 E-value=15 Score=34.71 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCC
Q 012829 348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 427 (455)
Q Consensus 348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~ 427 (455)
+.+...+|-.+|+..++|+.|+...+.++. +.|++|. ....-|.+|..+|.+..|..-|+.-++ +=|
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~-----l~P~dp~---e~RDRGll~~qL~c~~~A~~DL~~fl~-----~~P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQ-----FDPEDPY---EIRDRGLIYAQLDCEHVALSDLSYFVE-----QCP 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHH-----hCC
Confidence 345677888899999999999999888776 4566663 344557788899999999887777665 347
Q ss_pred CChhHHHHHHHHHHHHHH
Q 012829 428 NSPFMKELILKLEEAQAE 445 (455)
Q Consensus 428 ~hp~~~~~~~~l~~~~~~ 445 (455)
+.|...-+...++.++.+
T Consensus 247 ~dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 247 EDPISEMIRAQIHSIEQK 264 (269)
T ss_pred CchhHHHHHHHHHHHhhc
Confidence 788777777777777654
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=83.38 E-value=6.7 Score=39.52 Aligned_cols=61 Identities=10% Similarity=-0.036 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
++..++.+....|+++.|...+++++.. +|..+..++-.|.+....|+.++|...+++|++
T Consensus 340 a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 340 ILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4555777778888899999999998873 366677789999999999999999999998764
No 245
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.34 E-value=27 Score=31.05 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 416 (455)
.-.++..+.+.|++++|...++.++. ++.+.-..++.-.+||.++..+|++++|.+.|..
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALA-----QTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHc-----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 34688889999999999999888775 5567777788899999999999999999887654
No 246
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.32 E-value=9.8 Score=28.13 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc--cCCCChhHHHHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~--~G~~hp~~~~~~~~l~~~~~~ 445 (455)
.|..+...|.-+-..|++++|+.+|++|++.+... .-||++.-.-...++.+-..+
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 35566677778889999999999999999988776 336676554455555554443
No 247
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.78 E-value=0.37 Score=48.52 Aligned_cols=43 Identities=26% Similarity=0.608 Sum_probs=31.9
Q ss_pred CCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhh
Q 012829 26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS 71 (455)
Q Consensus 26 ~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~ 71 (455)
+.+-|.+|....-+.- |=...|||-+||+..|..|+--|..-+
T Consensus 526 kKQWC~nC~~EAiy~C---CWNTSYCsveCQQ~HW~~H~ksCrrk~ 568 (588)
T KOG3612|consen 526 KKQWCYNCLDEAIYHC---CWNTSYCSVECQQGHWPEHRKSCRRKK 568 (588)
T ss_pred HHHHHHhhhHHHHHHh---hccccccCcchhhccchhHhhhhcccC
Confidence 3566888888743332 233569999999999999999998543
No 248
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.42 E-value=5 Score=38.78 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=57.8
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 395 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 395 (455)
.+.+..+|..|+.+++-.+... .-.--.+...++..+...|+|++|+..+.-+.+ .+.|. +-.-.
T Consensus 31 dfls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~~~-~el~v 95 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDDAP-AELGV 95 (557)
T ss_pred HHHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCCCC-cccch
Confidence 3456778888888766554321 111123445688899999999999988766544 22221 23345
Q ss_pred HHHHHhhhcCCcHHHHHHHHHH
Q 012829 396 TCGKLEWFLGDTENAIKSMTEA 417 (455)
Q Consensus 396 ~La~l~~~~g~~~eA~~~l~~A 417 (455)
+||..++.+|.|.||.....+|
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhC
Confidence 7888899999999998876554
No 249
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.30 E-value=28 Score=31.97 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhc-CCcHHHHHHHHHHHHh
Q 012829 364 DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL-GDTENAIKSMTEAVEI 420 (455)
Q Consensus 364 ~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~-g~~~eA~~~l~~A~~i 420 (455)
+-.+|+..+.++++||...-. ...-+.....+|.+|..- -++++|+.+|++|.+-
T Consensus 88 ~~~eAv~cL~~aieIyt~~Gr--f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGR--FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhH--HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 555666666666665543211 111233344445554432 4555555555555543
No 250
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=81.27 E-value=14 Score=40.03 Aligned_cols=84 Identities=10% Similarity=0.013 Sum_probs=43.3
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
+...|++++|..++.... +.+ ..+++.|+..|...|++++|+++++++... -..++ ...+..
T Consensus 269 y~k~g~~~~A~~vf~~m~--------~~~---~vt~n~li~~y~~~g~~~eA~~lf~~M~~~---g~~pd----~~t~~~ 330 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMP--------EKT---TVAWNSMLAGYALHGYSEEALCLYYEMRDS---GVSID----QFTFSI 330 (697)
T ss_pred HHHCCCHHHHHHHHHhCC--------CCC---hhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC----HHHHHH
Confidence 334566666666554331 111 234556666677777777777766655331 01111 124455
Q ss_pred HHHHhhhcCCcHHHHHHHHHHH
Q 012829 397 CGKLEWFLGDTENAIKSMTEAV 418 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~~A~ 418 (455)
+...+...|++++|...+.+++
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHH
Confidence 5555556666666665555444
No 251
>PLN02789 farnesyltranstransferase
Probab=81.27 E-value=16 Score=35.40 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhc
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL 404 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~ 404 (455)
.++..+.+.++...|+|++|++++.++|+. +|.-...++..+.+....
T Consensus 142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 142 YHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhc
Confidence 345555666667778888888888888774 122234566666666555
No 252
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.91 E-value=16 Score=32.10 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
.+-.++..++.-|...||+++|++.+.++.+ ..-++.| +....+++-.+....+++..+.+++.+|..+++.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~---~~~~~~~--~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARD---YCTSPGH--KIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---hcCCHHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 3445677899999999999999999888544 2333333 3455667777888899999999999999998888
No 253
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.83 E-value=2.9 Score=23.68 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQ 373 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~ 373 (455)
++..|+.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678999999999999998765
No 254
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=80.48 E-value=3.9 Score=36.07 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=40.2
Q ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 344 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 344 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
..+..++++.+|..-|..+|++.-|+..|+.+++-..+..|..||.+
T Consensus 135 E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 135 EIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 35667788899999999999999999999999999999999999975
No 255
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=80.31 E-value=0.92 Score=29.49 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=19.2
Q ss_pred ccCccccCcCCCcCCCCCCccccCCHHHhHhhhh
Q 012829 28 SRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWK 61 (455)
Q Consensus 28 ~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~ 61 (455)
.+|-.|-+.... .-....|||++|+..|+.
T Consensus 7 ~yC~~Cdk~~~~----~~~~~lYCSe~Cr~~D~~ 36 (43)
T PF12855_consen 7 DYCIVCDKQIDP----PDDGSLYCSEECRLKDQE 36 (43)
T ss_pred hHHHHhhccccC----CCCCccccCHHHHhHhhh
Confidence 456666654211 124457999999998864
No 256
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=80.15 E-value=5.4 Score=40.10 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=80.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
+-++|..++...+|+.|+.+|.+++++ +|+...+..-+ +.++...++|..|+.-+.++++ ..|.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l-----dpnca~~~anR---a~a~lK~e~~~~Al~Da~kaie--------~dP~ 70 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL-----DPNCAIYFANR---ALAHLKVESFGGALHDALKAIE--------LDPT 70 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc-----CCcceeeechh---hhhheeechhhhHHHHHHhhhh--------cCch
Confidence 345566667778999999999999874 45544433322 2567888999999988888777 3487
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 444 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~ 444 (455)
....|+.=|...+.++++.+|...|++...+ -|+-|..+.....-+.+.+
T Consensus 71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l-----~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKL-----APNDPDATRKIDECNKIVS 120 (476)
T ss_pred hhheeeeccHHHHhHHHHHHHHHHHHHhhhc-----CcCcHHHHHHHHHHHHHHH
Confidence 7788888888899999999999988877653 3666655444444444433
No 257
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.09 E-value=13 Score=34.49 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
..........+|.-|...|++++|.++|+.+...++.. ....+..+++.+|.++..++.
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhC
Confidence 55667778899999999999999999999997666654 456677888888888766554
No 258
>PLN03077 Protein ECB2; Provisional
Probab=79.90 E-value=13 Score=41.55 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=63.4
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 395 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 395 (455)
.+...|+.++|+.++++..+. -+.|+... ...+..+|...|++++|.++++.+...+ | ..|.+ .+|.
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~---g~~Pd~~T----~~~ll~a~~~~g~v~ea~~~f~~M~~~~----g-i~P~~-~~y~ 629 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVES---GVNPDEVT----FISLLCACSRSGMVTQGLEYFHSMEEKY----S-ITPNL-KHYA 629 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHc---CCCCCccc----HHHHHHHHhhcChHHHHHHHHHHHHHHh----C-CCCch-HHHH
Confidence 345668889999888776542 23444333 4456678899999999999988776432 2 23333 5688
Q ss_pred HHHHHhhhcCCcHHHHHHHHH
Q 012829 396 TCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 396 ~La~l~~~~g~~~eA~~~l~~ 416 (455)
.+..++...|++++|++++++
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 889999999999999998776
No 259
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=79.81 E-value=16 Score=37.99 Aligned_cols=86 Identities=10% Similarity=0.059 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc--------cHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829 322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE--------DWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 393 (455)
Q Consensus 322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g--------~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 393 (455)
++..|+.++++++++ .|+ ...++-.++.+|.... ++..|.+..++++.. -..+..| ..
T Consensus 357 ~~~~A~~lle~Ai~l-----dP~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al---~~~~~~~---~~ 422 (517)
T PRK10153 357 SLNKASDLLEEILKS-----EPD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL---PELNVLP---RI 422 (517)
T ss_pred HHHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc---ccCcCCh---HH
Confidence 466788888888764 233 3333333444443222 222333333322221 0122333 44
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 394 YYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 394 l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
+.-+|.++...|++++|..++++|+++-
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 6667888888999999999999999866
No 260
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=79.49 E-value=9 Score=35.46 Aligned_cols=63 Identities=8% Similarity=0.068 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
+++-+..-+..|+|++|..+++.+. .+.-++++.+ -.+..++..++..+++++|+..+.+=+.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~--~~~p~s~~~~---qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALD--SRHPFSPYSE---QAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCcccH---HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344445667899999999988866 3444556665 4477889999999999999998776554
No 261
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=79.39 E-value=3.9 Score=36.13 Aligned_cols=51 Identities=18% Similarity=-0.056 Sum_probs=42.4
Q ss_pred hcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829 382 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 432 (455)
Q Consensus 382 ~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~ 432 (455)
.-+...|...-.+.+|..-|...|+++-|++..+.|++-+..+.|.+||.+
T Consensus 131 ~~~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 131 SQGYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp -S-TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 345678888899999999999999999999999999999999999999953
No 262
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=79.38 E-value=9.2 Score=33.73 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
++.+-+..|+......|++.||..++++++...= ...|. .+..+|+.+...++..+|...|++-.+-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f----A~d~a---~lLglA~Aqfa~~~~A~a~~tLe~l~e~ 153 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIF----AHDAA---MLLGLAQAQFAIQEFAAAQQTLEDLMEY 153 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc----CCCHH---HHHHHHHHHHhhccHHHHHHHHHHHhhc
Confidence 3455577799999999999999999998876321 23443 4778899999999999999988876653
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.12 E-value=19 Score=36.58 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=43.5
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL 374 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 374 (455)
.|+.....|+.+||++.++.+++.. + ..+...++++|..+++..+.|.++..+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~----p--~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF----P--NLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC----C--ccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4666677789999999888876531 1 335677899999999999999999777555
No 264
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=78.93 E-value=14 Score=27.67 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh---------hHHHHHHHHHHHHHHHhhh
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP---------FMKELILKLEEAQAEASYK 449 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp---------~~~~~~~~l~~~~~~~~~~ 449 (455)
.|...-..|.-+-+.|+.++|+.+|++++.++.....-..| ..+.++.++.....+++.+
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~R 75 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTR 75 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666677799999999999999988887765542 2234555555555555543
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=78.75 E-value=30 Score=36.72 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=15.0
Q ss_pred HHhchhccCCCChhHHHHHHHHH
Q 012829 418 VEILRITHGTNSPFMKELILKLE 440 (455)
Q Consensus 418 ~~i~~~~~G~~hp~~~~~~~~l~ 440 (455)
++.+.+++..+|++.-.+-.++.
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHH
Confidence 45666788888887655554443
No 266
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.30 E-value=27 Score=32.61 Aligned_cols=98 Identities=11% Similarity=0.142 Sum_probs=65.4
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 393 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 393 (455)
....+.-||...|...++++.+... .+....-. +-+..+-+.+|..+.+|.+|...+.+.+ ...|..+..
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~-~~V~~n~a~i~lg~nn~a~a~r~~~~i~--------~~D~~~~~a 288 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGK-IMVLMNSAFLHLGQNNFAEAHRFFTEIL--------RMDPRNAVA 288 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHh-hhhccchh-HHHHhhhhhheecccchHHHHHHHhhcc--------ccCCCchhh
Confidence 3345666887777777776654322 22211111 1223345567777888888877655543 356677778
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 394 YYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 394 l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
-++-|..+..+|+..+|++.++.++.+.
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8899999999999999999999988865
No 267
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=76.76 E-value=13 Score=27.63 Aligned_cols=53 Identities=19% Similarity=0.114 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc-CCCChhHHH-HHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKE-LILKLEEA 442 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~-G~~hp~~~~-~~~~l~~~ 442 (455)
.|..+..-|.-.-..|++++|..+|.+|++.+.... +...+..++ +..++.+-
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY 59 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEY 59 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 356667777788899999999999999999888753 333344444 34444443
No 268
>PRK01343 zinc-binding protein; Provisional
Probab=76.71 E-value=2 Score=29.67 Aligned_cols=27 Identities=22% Similarity=0.609 Sum_probs=16.7
Q ss_pred CccCccccCcCCCcCCCCCCccccCCHHHhHhh
Q 012829 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLD 59 (455)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~ 59 (455)
...|-.|.+.... .+.-|||+.|+.-|
T Consensus 9 ~~~CP~C~k~~~~------~~rPFCS~RC~~iD 35 (57)
T PRK01343 9 TRPCPECGKPSTR------EAYPFCSERCRDID 35 (57)
T ss_pred CCcCCCCCCcCcC------CCCcccCHHHhhhh
Confidence 3456666655210 23469999999865
No 269
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.59 E-value=69 Score=32.68 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=60.8
Q ss_pred HhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829 360 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 439 (455)
Q Consensus 360 ~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l 439 (455)
+.++++.||..+.++.++... --.....+|..+.-||.+..-.|+..|+++..+-|++...+. +|||...=....+
T Consensus 456 f~qn~lnEaK~~l~e~Lkman--aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~ 531 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMAN--AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSIL 531 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHH
Confidence 468999999999999988762 223556788889999999999999999999999999988888 5666443333333
Q ss_pred HHH
Q 012829 440 EEA 442 (455)
Q Consensus 440 ~~~ 442 (455)
+++
T Consensus 532 ~~L 534 (629)
T KOG2300|consen 532 TDL 534 (629)
T ss_pred HHH
Confidence 333
No 270
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=76.28 E-value=1.9 Score=30.43 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=9.2
Q ss_pred ccCCHHHhHhh
Q 012829 49 WYCGSNCQKLD 59 (455)
Q Consensus 49 ~yCs~~C~~~~ 59 (455)
-|||+.|+.-|
T Consensus 26 PFCS~RCk~ID 36 (62)
T PRK00418 26 PFCSKRCQLID 36 (62)
T ss_pred CcccHHHHhhh
Confidence 49999999865
No 271
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.24 E-value=4.7 Score=22.55 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPV 378 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 378 (455)
+...++..+...|++++|...++.++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4567888999999999999999888764
No 272
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=76.17 E-value=0.92 Score=42.46 Aligned_cols=38 Identities=26% Similarity=0.732 Sum_probs=30.1
Q ss_pred CCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhH
Q 012829 26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68 (455)
Q Consensus 26 ~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~ 68 (455)
..-.|+-|.....-..||.|+.. |||-.|.+ .|++.|.
T Consensus 6 ~~~~C~ic~vq~~~YtCPRCn~~-YCsl~CYr----~h~~~Cs 43 (383)
T KOG4317|consen 6 SFLACGICGVQKREYTCPRCNLL-YCSLKCYR----NHKHSCS 43 (383)
T ss_pred ceeeccccccccccccCCCCCcc-ceeeeeec----CCCccch
Confidence 34678888887656999999986 99999975 4776685
No 273
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=76.02 E-value=1.4 Score=30.51 Aligned_cols=11 Identities=27% Similarity=0.936 Sum_probs=9.2
Q ss_pred ccCCHHHhHhh
Q 012829 49 WYCGSNCQKLD 59 (455)
Q Consensus 49 ~yCs~~C~~~~ 59 (455)
-|||+.|+.-|
T Consensus 22 PFCS~RCk~iD 32 (57)
T PF03884_consen 22 PFCSERCKLID 32 (57)
T ss_dssp SSSSHHHHHHH
T ss_pred CcccHhhcccC
Confidence 39999999865
No 274
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.00 E-value=37 Score=31.51 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 416 (455)
...-.+|..|...|+|++|+.+++.+...|+ =..++......+..|...+..+|+.++.+.+.-+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr--~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYR--REGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445689999999999999999999966554 3467778888899999999999999888776433
No 275
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=75.86 E-value=42 Score=34.96 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 428 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 428 (455)
.|.....|..+..+|++..|++.+....+++...+--.
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 45566779999999999999999998888877665443
No 276
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=75.80 E-value=1.7 Score=45.67 Aligned_cols=27 Identities=26% Similarity=0.822 Sum_probs=21.6
Q ss_pred CcCCCCC---C----ccccCCHHHhHhhhhhhHH
Q 012829 39 LKKCSAC---Q----VVWYCGSNCQKLDWKLHRL 65 (455)
Q Consensus 39 ~~~C~~C---~----~~~yCs~~C~~~~~~~H~~ 65 (455)
...|+.| + ..+|||++|.+.+|+.||.
T Consensus 74 ~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~ 107 (606)
T PLN03144 74 TLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRV 107 (606)
T ss_pred cccCccchhcCCCcCcceeeCHHHHHHHHHHHHH
Confidence 4678877 2 3689999999999998863
No 277
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=75.62 E-value=40 Score=35.63 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=15.5
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 394 YYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 394 l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
+++-+.+.+.+|..++|..++++|++++
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~f 681 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSF 681 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4444555555555566665555555544
No 278
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.61 E-value=72 Score=29.95 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~ 415 (455)
+++.++......++|.-.+.++.+.++ .+|+..|.+ ...||.+.+..|+.+.|..+++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~----~~~e~~p~L---~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIK----YYPEQEPQL---LSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHH----hCCcccHHH---HHHHHHHHHhcccHHHHHHHHH
Confidence 345555666666677666666666555 455555544 5566666777777777776666
No 279
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=75.49 E-value=19 Score=26.53 Aligned_cols=37 Identities=19% Similarity=0.033 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 425 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~ 425 (455)
..|..+..-|.-.-..|++++|..+|.+|++.+....
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3456666677778889999999999999999888764
No 280
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=75.34 E-value=18 Score=39.79 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
.++...|+.+|...|++.-|++...++.... |.--...|..|.+....|+|++|+..+...+......
T Consensus 596 ~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e 663 (1238)
T KOG1127|consen 596 YNLWLGLGEAYPESGRYSHALKVFTKASLLR--------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE 663 (1238)
T ss_pred HHHHHHHHHHHHhcCceehHHHhhhhhHhcC--------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4456678999999999999999888776532 3334567888899999999999999888776655544
No 281
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=75.28 E-value=50 Score=32.97 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=69.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcc------cCCccccHHH----HHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKL------YHPFSVNLMQ----TREKLIKILMELEDWKEALAYCQLTIPVYQ 380 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~------l~~~~~~~~~----~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~ 380 (455)
.+.|++.+.+++|..|..-++.++++..+. +.+..-++.. ....|...|+.+++-+.|+.+..+.|....
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 456677777777777777777777765442 2223333332 235688899999999999999888776322
Q ss_pred hhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829 381 RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 432 (455)
Q Consensus 381 ~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~ 432 (455)
.|+.+|..- |-+...+.+|.||-....-|.-++-..-|.++...
T Consensus 260 -~~frnHLrq-------AavfR~LeRy~eAarSamia~ymywl~g~~~q~~S 303 (569)
T PF15015_consen 260 -SYFRNHLRQ-------AAVFRRLERYSEAARSAMIADYMYWLSGGSEQRIS 303 (569)
T ss_pred -chhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHH
Confidence 233334332 33455667777776666656555555545554433
No 282
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.20 E-value=66 Score=34.31 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=67.8
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829 319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 398 (455)
Q Consensus 319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La 398 (455)
...++++|+..+++...+..+ +...-.-..+..-|+.++...+... |+.++++.+..++. +|..+......+.+..
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~~~~~w~~~frll~~~ 147 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQ 147 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-cCchhHHHHHHHHHHH
Confidence 556889999888887766554 2222233556666777777776655 99999999998886 6666666666555443
Q ss_pred HHhhhcCCcHHHHHHHHHHHHhch
Q 012829 399 KLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 399 ~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
..... +++..|...+++....-.
T Consensus 148 l~~~~-~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 148 LALQH-KDYNAALENLQSIAQLAN 170 (608)
T ss_pred HHHhc-ccHHHHHHHHHHHHHHhh
Confidence 33333 888889888887666544
No 283
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=75.17 E-value=79 Score=31.40 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=64.0
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHH--hcccHHHHHHHHHHhh------------hh
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM--ELEDWKEALAYCQLTI------------PV 378 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~--~~g~~~~A~~~~~~~l------------~~ 378 (455)
.+..++..++|..|..++..+... .+.+........+..|...|. +.-++++|.+++.+.+ +.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r---~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~ 212 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRR---LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDE 212 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc---ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhH
Confidence 344566788999999998887643 344455555566666776664 5678889998887211 11
Q ss_pred -------HHhhcC------------CCChHHHHHHHHH--HHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 379 -------YQRVYP------------QFHPLLGLQYYTC--GKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 379 -------~~~~~g------------~~hp~~~~~l~~L--a~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
...+.| ..+|.+.+...-+ |.--...|+|+.|...+-+|++++.
T Consensus 213 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~ 277 (380)
T TIGR02710 213 LEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIV 277 (380)
T ss_pred HHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 111222 1233322211112 2233467999999999888886543
No 284
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.12 E-value=3.7 Score=26.90 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
..+||.+|+.+|+.+.|.+..+.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35799999999999999998777664
No 285
>PF08189 Meleagrin: Meleagrin/Cygnin family; InterPro: IPR012573 This family consists of meleagrin and cygnin basic peptides that are isolated from turkey and black swan respectively. Both peptides are low in molecular weight and contain three disulphide bonds with high concentrations of aromatic residues. These peptides show similarity to transferrins and probably play some vital role in avian eggs but the exact function is still unknown [].
Probab=74.72 E-value=0.65 Score=28.37 Aligned_cols=19 Identities=42% Similarity=1.144 Sum_probs=14.7
Q ss_pred CCccccCCHHHhHhh-hhhh
Q 012829 45 CQVVWYCGSNCQKLD-WKLH 63 (455)
Q Consensus 45 C~~~~yCs~~C~~~~-~~~H 63 (455)
|..+-|||..|.+.+ |.+|
T Consensus 6 cpkiGYCS~~CsKt~vWa~s 25 (39)
T PF08189_consen 6 CPKIGYCSSKCSKTDVWAFS 25 (39)
T ss_pred Ccccceecccccccceeeec
Confidence 555679999999875 7764
No 286
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=74.35 E-value=13 Score=37.13 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=52.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829 353 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 425 (455)
Q Consensus 353 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~ 425 (455)
-.|.+++.-+|||..|++....+--....+|..--+.....+|.+|-.|+.+++|.+|++.+...+--+.++-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466667778999999998776533333445433333345588899999999999999999998876555553
No 287
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.00 E-value=14 Score=35.01 Aligned_cols=78 Identities=12% Similarity=-0.035 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh
Q 012829 322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 401 (455)
Q Consensus 322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~ 401 (455)
+|++++.+.. ..|+.++........|+..|...++|.+|.+.+.+ ++..||..+...+--|+.+
T Consensus 25 ry~DaI~~l~--------s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQ--------L~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 25 RYADAIQLLG--------SELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQ--------LGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHH--------HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhChHHHHHHHHHHHHH
Confidence 5566665432 23445565556677799999999999999988776 4568898887777778888
Q ss_pred hhcCCcHHHHHHHH
Q 012829 402 WFLGDTENAIKSMT 415 (455)
Q Consensus 402 ~~~g~~~eA~~~l~ 415 (455)
++.+.+.+|...+.
T Consensus 89 Y~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 89 YKACIYADALRVAF 102 (459)
T ss_pred HHhcccHHHHHHHH
Confidence 89998888876533
No 288
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=73.61 E-value=1.6 Score=27.87 Aligned_cols=28 Identities=32% Similarity=0.825 Sum_probs=15.2
Q ss_pred CccCCCCCCccccc----CCCCCCcccCCCCCcC
Q 012829 266 YRCKDDGCSGFLLR----DSDDKGFTCQQCGLVR 295 (455)
Q Consensus 266 ~~C~~~~C~g~~~~----~~~~~~~~C~~C~~~~ 295 (455)
++|. .|++++.| +.+++.|+|..|+..-
T Consensus 3 ~rC~--~C~aylNp~~~~~~~~~~w~C~~C~~~N 34 (40)
T PF04810_consen 3 VRCR--RCRAYLNPFCQFDDGGKTWICNFCGTKN 34 (40)
T ss_dssp -B-T--TT--BS-TTSEEETTTTEEEETTT--EE
T ss_pred cccC--CCCCEECCcceEcCCCCEEECcCCCCcC
Confidence 4675 57777754 4456889999999753
No 289
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=73.61 E-value=23 Score=39.06 Aligned_cols=105 Identities=16% Similarity=0.076 Sum_probs=78.6
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+..+...|++..|++.+.++.. +.|.|. -.+...+......|+|++|+..+...+.......+ .-...|.
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~-----LrP~s~---y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~-~q~gLaE 672 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASL-----LRPLSK---YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT-GQNGLAE 672 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHh-----cCcHhH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-hhhhHHH
Confidence 34556778888888888877654 334333 34556666777889999999998888876664444 3345677
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccC
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 426 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G 426 (455)
.+..+++.+.-.|=+..|..+++++++++....-
T Consensus 673 ~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 673 SVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999988877643
No 290
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.52 E-value=7.2 Score=26.69 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
.++.||..+..+|+|++|..+++.+|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456788889999999999999998887
No 291
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=73.44 E-value=29 Score=28.35 Aligned_cols=67 Identities=12% Similarity=0.027 Sum_probs=52.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH-------HHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 353 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-------LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 353 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-------~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
..+|......+++-.+.-+|++++.+.+...-..... ......|||..+..+|+.+=..+||+-|-+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777888999999999999999888874322222 135678999999999999999999998765
No 292
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=73.01 E-value=34 Score=29.39 Aligned_cols=96 Identities=23% Similarity=0.215 Sum_probs=61.6
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 395 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 395 (455)
.+...|+++++...+++++.. .+...........+...+...+++++|+....+++...... ....+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHH
Confidence 345667888888877777431 11112233334444444667778888888877777655433 445567
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 396 TCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 396 ~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
.++..+...+++++|...+.+++.....
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 7777788888888888888888776654
No 293
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=72.87 E-value=27 Score=25.78 Aligned_cols=55 Identities=13% Similarity=-0.040 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc-CCCChhHHHH-HHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKEL-ILKLEEAQ 443 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~-G~~hp~~~~~-~~~l~~~~ 443 (455)
..|..+..-|.-.-..|++++|..+|..|++.+.... +...|..++. ..++.+-.
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl 60 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYV 60 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 3456677778788899999999999999999888864 5566666553 34444443
No 294
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.86 E-value=33 Score=33.16 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=53.2
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH--
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-- 390 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-- 390 (455)
++..+...|++.+|-..+.+++... |. +++.. .-.-.++...|+..... ...++++|.+.|..
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~-----Pt--Dlla~-kfsh~a~fy~G~~~~~k-------~ai~kIip~wn~dlp~ 173 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDY-----PT--DLLAV-KFSHDAHFYNGNQIGKK-------NAIEKIIPKWNADLPC 173 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhC-----ch--hhhhh-hhhhhHHHhccchhhhh-------hHHHHhccccCCCCcH
Confidence 3444556667777666666665431 11 11111 11113455556654443 35667888666554
Q ss_pred -HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 391 -GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 391 -~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
....-.+|--+.+.|-|++|++.-.+|++|=+.
T Consensus 174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~ 207 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYDDAEKQADRALQINRF 207 (491)
T ss_pred HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc
Confidence 222223333455789999999999988887554
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.19 E-value=52 Score=28.31 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHh
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 375 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 375 (455)
..|.+..+.....++.+++..++..+ +++.|.++.+ ...-+..++..|+|.+|+.+++.+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~AL-----rvLRP~~~e~---~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDAL-----RVLRPEFPEL---DLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHH-----HHhCCCchHH---HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444555556667888887776554 3455655443 333556788899999999988875
No 296
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=72.18 E-value=5.8 Score=22.83 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
...+...|...|++++|.+.++++.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 56788899999999999999887654
No 297
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.78 E-value=32 Score=36.13 Aligned_cols=104 Identities=15% Similarity=0.057 Sum_probs=70.2
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
+|+.|...+...+|..+++.|+..+... .-+..+...+....+|.-.|....+.+.|+++.+.+-+ +-| -.|.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i--~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~----~d~-~~~l 429 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDI--ISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE----VDR-QSPL 429 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhc--cchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh----hcc-ccHH
Confidence 4666777666678888888887776532 12223445578888999999999999999998776533 332 2333
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
. -+.+-++...-|.-++|...+.+...++..
T Consensus 430 ~---q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 430 C---QLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred H---HHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 3 333344555678888898888877766654
No 298
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=71.58 E-value=29 Score=37.64 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=51.7
Q ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh---hcCCCChHHH---------HHHHHHHHHhhhcCCcHHHH
Q 012829 344 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR---VYPQFHPLLG---------LQYYTCGKLEWFLGDTENAI 411 (455)
Q Consensus 344 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~---~~g~~hp~~~---------~~l~~La~l~~~~g~~~eA~ 411 (455)
+.+++-.++++-+.-+...+|.+.|++|++++-...-. .+-.+-|.+- ..+.=.|+-+...|+.+.|+
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 34566678888888888889999999999986432221 1222222221 11222366666789999999
Q ss_pred HHHHHHHHhchh
Q 012829 412 KSMTEAVEILRI 423 (455)
Q Consensus 412 ~~l~~A~~i~~~ 423 (455)
.+|..|.+-+..
T Consensus 933 ~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 933 SFYSSAKDYFSM 944 (1416)
T ss_pred HHHHHhhhhhhh
Confidence 999888765543
No 299
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=71.39 E-value=16 Score=26.24 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC-ChhHHH-HHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKE-LILKLEEAQ 443 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~-hp~~~~-~~~~l~~~~ 443 (455)
.|..+.+.|.-.-..|++++|..+|.+|++.+......+ .|..++ +..++..-.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl 59 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYL 59 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 466677788888899999999999999999888775533 333333 334444433
No 300
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.32 E-value=3.7 Score=39.52 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
....-.|.....+|.+++|++.+-.++.+ ++.....+-.=+.++..++++..|+.-|..++.+-.
T Consensus 115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~------- 179 (377)
T KOG1308|consen 115 NDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP------- 179 (377)
T ss_pred HHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhccCc-------
Confidence 34444677778899999999988777654 444455555556678888999999998888887532
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
..+.-|--=|.....+|..++|...|..|..
T Consensus 180 -Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 180 -DSAKGYKFRGYAERLLGNWEEAAHDLALACK 210 (377)
T ss_pred -ccccccchhhHHHHHhhchHHHHHHHHHHHh
Confidence 2222222224455566777777666666554
No 301
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=70.00 E-value=3.3 Score=27.33 Aligned_cols=28 Identities=29% Similarity=0.673 Sum_probs=18.1
Q ss_pred CccCCCCCCcccccCCCCCCcccCCCCCcC
Q 012829 266 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVR 295 (455)
Q Consensus 266 ~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 295 (455)
|+|+ +|+..+..++....+.|+.||...
T Consensus 4 y~C~--~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 4 YKCA--RCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred EECC--CCCCEEEECCCCCceECCCCCCeE
Confidence 5675 577666555444467888888754
No 302
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=69.98 E-value=2.1 Score=35.41 Aligned_cols=32 Identities=25% Similarity=0.526 Sum_probs=26.5
Q ss_pred CCCccCccccCcCCCcCCCCCCccccCCHHHhHh
Q 012829 25 SSISRCDGCFASSNLKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 25 ~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~ 58 (455)
....+|+.|+ -.....|.+|+. .|||..|.+.
T Consensus 116 P~r~fCaVCG-~~S~ysC~~CG~-kyCsv~C~~~ 147 (156)
T KOG3362|consen 116 PLRKFCAVCG-YDSKYSCVNCGT-KYCSVRCLKT 147 (156)
T ss_pred CcchhhhhcC-CCchhHHHhcCC-ceeechhhhh
Confidence 3578999999 556889999998 4999999864
No 303
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.20 E-value=12 Score=36.36 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=50.0
Q ss_pred HHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHH
Q 012829 355 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAI 411 (455)
Q Consensus 355 L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~ 411 (455)
+++-.+.++++..|...+..+..+...+||..|-..+-.+|.-|+.++..++.+.++
T Consensus 47 ~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 47 AGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred hhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566789999999999999999999999999999999999999999888777655
No 304
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.20 E-value=15 Score=34.78 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
.+..+.+-+....|+++.|++-.+.++. .|.+.|.++ |++|..++..|++..|.++..+.++
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlq-----vsGyqpllA---YniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQ-----VSGYQPLLA---YNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHh-----hcCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3455666677788999999998888776 567888764 6788899999999999999877664
No 305
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=69.18 E-value=23 Score=33.51 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=48.4
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhc-C--CcHHHHHHHHHHHH
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL-G--DTENAIKSMTEAVE 419 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~-g--~~~eA~~~l~~A~~ 419 (455)
||.=.+-..-|+.+|+.+|++..|+.-|++++.+ -++.|.+ +..+|.++..+ | ...+|..++++|+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~---~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNPEI---LLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 4444566778999999999999999999998873 3577776 34445554443 2 34678888888876
No 306
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.03 E-value=2.5 Score=29.72 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=8.9
Q ss_pred ccCCHHHhHhh
Q 012829 49 WYCGSNCQKLD 59 (455)
Q Consensus 49 ~yCs~~C~~~~ 59 (455)
-|||+.|+.-|
T Consensus 27 PFCSkRCklID 37 (65)
T COG3024 27 PFCSKRCKLID 37 (65)
T ss_pred cchhHhhhhcc
Confidence 38999999754
No 307
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.80 E-value=26 Score=33.17 Aligned_cols=70 Identities=19% Similarity=0.123 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 384 (455)
...+...+..+...|.+.+|.+++++++.+ |+..-.....|+.+++..||--.|..++++.-..+++-+|
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelg 348 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELG 348 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhC
Confidence 344455666778889999999999988764 3333344556888899999988999999999888888888
No 308
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.94 E-value=1.2e+02 Score=33.35 Aligned_cols=91 Identities=20% Similarity=0.128 Sum_probs=63.2
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
|-..+.++..+...+.. ++.+..-.+..+.......+..|-..+. ++.||+++...|++++|...+.+....+...
T Consensus 576 ~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~-~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 576 HEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLA-LSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred chhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 44566777677777665 5556555566666665555555555544 3899999999999999999999888877766
Q ss_pred cCCCChhHHHHHHHHHH
Q 012829 425 HGTNSPFMKELILKLEE 441 (455)
Q Consensus 425 ~G~~hp~~~~~~~~l~~ 441 (455)
. .|+++.-...+..-
T Consensus 652 ~--~~~~~~a~~~~v~~ 666 (894)
T COG2909 652 Q--YHVDYLAAAYKVKL 666 (894)
T ss_pred C--CCchHHHHHHHhhH
Confidence 4 67777655444433
No 309
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.87 E-value=26 Score=34.95 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=63.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhh----ccc-CCccccHHHHHHHHHHHHHhccc---HHHHHHHHHHhhhhHH
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQK----KLY-HPFSVNLMQTREKLIKILMELED---WKEALAYCQLTIPVYQ 380 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~----~~l-~~~~~~~~~~~~~L~~~~~~~g~---~~~A~~~~~~~l~~~~ 380 (455)
.++++|..++....|++|+.++-.+.+... +++ .-+|+.+++. .+.+.|..+.+ ...|..-+.++-..++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnL--DIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNL--DIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhc--chhheehhhcccccCChHHHHHHHHHHhhh
Confidence 456677777777788888876655544221 111 1123333221 23445554433 2344444444444555
Q ss_pred hhcC-----------CCChHHHHHHH---HHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 381 RVYP-----------QFHPLLGLQYY---TCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 381 ~~~g-----------~~hp~~~~~l~---~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
+.|| +..|..++.+. --|.+.+.+|+.++|.++|+.|..-+
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l 297 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKL 297 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5554 45666654332 23888999999999999999887544
No 310
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=67.73 E-value=28 Score=37.09 Aligned_cols=97 Identities=13% Similarity=0.151 Sum_probs=68.7
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829 319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 398 (455)
Q Consensus 319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La 398 (455)
.-++++.|.+.|..+.. +.| +-..+.+||+.+|+..++-++|......++.-- ..|+.+ ..|--
T Consensus 531 qlek~q~av~aF~rcvt-----L~P---d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-----~~~w~i---WENym 594 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVT-----LEP---DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-----YQHWQI---WENYM 594 (777)
T ss_pred HHhhhHHHHHHHHHHhh-----cCC---CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-----CCCCee---eechh
Confidence 33466666666665543 334 445778999999999999999988888877633 344544 11222
Q ss_pred HHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829 399 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 431 (455)
Q Consensus 399 ~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~ 431 (455)
.+....|.+++|.+.+++-+++-...-.++|+.
T Consensus 595 lvsvdvge~eda~~A~~rll~~~~~~~d~~vl~ 627 (777)
T KOG1128|consen 595 LVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLL 627 (777)
T ss_pred hhhhhcccHHHHHHHHHHHHHhhhhcccchhhH
Confidence 245688999999999999999888887666663
No 311
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.69 E-value=1.1e+02 Score=28.64 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=58.8
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
+|+.+...|.+++|++.|...++. .|.|..+-. ..++ +...+|+-.+|++.....++ .++.+| -
T Consensus 92 kam~lEa~~~~~~A~e~y~~lL~d-----dpt~~v~~K--RKlA-ilka~GK~l~aIk~ln~YL~----~F~~D~----E 155 (289)
T KOG3060|consen 92 KAMLLEATGNYKEAIEYYESLLED-----DPTDTVIRK--RKLA-ILKAQGKNLEAIKELNEYLD----KFMNDQ----E 155 (289)
T ss_pred HHHHHHHhhchhhHHHHHHHHhcc-----CcchhHHHH--HHHH-HHHHcCCcHHHHHHHHHHHH----HhcCcH----H
Confidence 355566778888888888777652 244444333 2233 34456776677766544443 444444 4
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAV 418 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~ 418 (455)
.+..|+.+|...|++++|.--|++.+
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 57788999999999999998888765
No 312
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=66.81 E-value=19 Score=33.20 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHH-hcccHHHHHHHHHHhhhhH
Q 012829 324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM-ELEDWKEALAYCQLTIPVY 379 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~-~~g~~~~A~~~~~~~l~~~ 379 (455)
+.|...|+.+..+...-++|.||..+....+.+.-|. ..|+.++|.++.+.+++-.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4677888888888877799999999998887776654 4799999999988877644
No 313
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=66.55 E-value=17 Score=34.13 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=36.9
Q ss_pred HHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 368 A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
|..+|.+++.+. |..|..++.||.++...|+.-+|+-+|.||+.
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHh
Confidence 567777777754 77899999999999999999999999999985
No 314
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=66.26 E-value=63 Score=26.38 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=47.0
Q ss_pred hcccHHHHHHHHHHhhhhHHhhcCC---CChH-HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 361 ELEDWKEALAYCQLTIPVYQRVYPQ---FHPL-LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 361 ~~g~~~~A~~~~~~~l~~~~~~~g~---~hp~-~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
.-|-|++|..-|+++.++.+.+=+. +|-- =++.+-.|+..+..+|+|++++..-.+|+.-+.+-
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 3478999999999999988755442 3443 36777788899999999999998888888766554
No 315
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.96 E-value=2.7 Score=26.97 Aligned_cols=29 Identities=24% Similarity=0.599 Sum_probs=18.6
Q ss_pred CccCccccCcCC----CcCCCCCCccccCCHHHhH
Q 012829 27 ISRCDGCFASSN----LKKCSACQVVWYCGSNCQK 57 (455)
Q Consensus 27 ~~~C~~C~~~~~----~~~C~~C~~~~yCs~~C~~ 57 (455)
...|..|.++-. -..|= ..|.|||+.|+.
T Consensus 8 ~K~C~~C~rpf~WRKKW~~~W--d~VkYCS~rCR~ 40 (42)
T PF10013_consen 8 SKICPVCGRPFTWRKKWARCW--DEVKYCSDRCRR 40 (42)
T ss_pred CCcCcccCCcchHHHHHHHhc--hhhccHHHHhcc
Confidence 467888887732 12221 346799999975
No 316
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.78 E-value=50 Score=34.01 Aligned_cols=64 Identities=20% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCC-cHHHHHHHHHHHH
Q 012829 355 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD-TENAIKSMTEAVE 419 (455)
Q Consensus 355 L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~-~~eA~~~l~~A~~ 419 (455)
++.+..++|+-..|..++....+- +...-.++-.+..++|.||.++|.+|. ..+|.++|.+|.+
T Consensus 455 ~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~ 519 (546)
T KOG3783|consen 455 KGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE 519 (546)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence 455667788888888877766654 333345566678899999999999999 9999999999976
No 317
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=65.54 E-value=1.2e+02 Score=32.09 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=24.2
Q ss_pred HHHhhhcCCcHHHHHHHHH---------------HHHhchhccCCCChhHHHHHH
Q 012829 398 GKLEWFLGDTENAIKSMTE---------------AVEILRITHGTNSPFMKELIL 437 (455)
Q Consensus 398 a~l~~~~g~~~eA~~~l~~---------------A~~i~~~~~G~~hp~~~~~~~ 437 (455)
|.+-..+|+.+.|...|.- +-++++..||.+.. +++.++
T Consensus 665 AdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT-~keMLR 718 (835)
T KOG2047|consen 665 ADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT-YKEMLR 718 (835)
T ss_pred HHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH-HHHHHH
Confidence 4444556888888777663 44677888887542 344433
No 318
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=64.85 E-value=96 Score=30.79 Aligned_cols=79 Identities=11% Similarity=0.091 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
.+....+.|..+...++|.+|+..+.++|++ .|.|. .+++.=++++..+|+|+.|...+++++. +.|.
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----~~~N~---KALyRrG~A~l~~~e~~~A~~df~ka~k----~~P~ 323 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLEL-----DPNNV---KALYRRGQALLALGEYDLARDDFQKALK----LEPS 323 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----CCCch---hHHHHHHHHHHhhccHHHHHHHHHHHHH----hCCC
Confidence 4555667788887888899999888888864 34444 4556677889999999999999999887 4454
Q ss_pred CChHHHHHHHHH
Q 012829 386 FHPLLGLQYYTC 397 (455)
Q Consensus 386 ~hp~~~~~l~~L 397 (455)
+ -.+...+-.|
T Consensus 324 N-ka~~~el~~l 334 (397)
T KOG0543|consen 324 N-KAARAELIKL 334 (397)
T ss_pred c-HHHHHHHHHH
Confidence 4 4443434333
No 319
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=64.51 E-value=12 Score=22.00 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
.+.+...|...|++++|.+++.++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46688899999999999999888654
No 320
>PF13041 PPR_2: PPR repeat family
Probab=64.42 E-value=13 Score=24.55 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
.+.+.|+..|.+.|++++|.++++++.+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3567788999999999999999998764
No 321
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=63.81 E-value=1.6e+02 Score=29.22 Aligned_cols=107 Identities=14% Similarity=-0.027 Sum_probs=68.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
...++...+.-|+|.+|+.+..+.-+ |...+. -.+...+.+....||++.|-.|..++-+ .+..+.
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae------~~e~p~--l~~l~aA~AA~qrgd~~~an~yL~eaae------~~~~~~ 152 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAE------HGEQPV--LAYLLAAEAAQQRGDEDRANRYLAEAAE------LAGDDT 152 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhh------cCcchH--HHHHHHHHHHHhcccHHHHHHHHHHHhc------cCCCch
Confidence 34456666677999999877555322 111222 2223345666778999999888766544 223333
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI 436 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~ 436 (455)
+ ......+.++.++|++..|...+.++++ .+|.||.+..+.
T Consensus 153 l-~v~ltrarlll~~~d~~aA~~~v~~ll~-----~~pr~~~vlrLa 193 (400)
T COG3071 153 L-AVELTRARLLLNRRDYPAARENVDQLLE-----MTPRHPEVLRLA 193 (400)
T ss_pred H-HHHHHHHHHHHhCCCchhHHHHHHHHHH-----hCcCChHHHHHH
Confidence 3 4456678889999999999998888765 467777654443
No 322
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=63.76 E-value=1.3e+02 Score=29.97 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=57.1
Q ss_pred ccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh--HHHHHHHHHHHHhhhcCCcHHHHHHHHHH
Q 012829 340 LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP--LLGLQYYTCGKLEWFLGDTENAIKSMTEA 417 (455)
Q Consensus 340 ~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp--~~~~~l~~La~l~~~~g~~~eA~~~l~~A 417 (455)
.+..+...-.-..+.|...|..-+.|+.|-.+ +.+..||..+. .-+-.+|-+|.+-.-+++|+.|.+++.+|
T Consensus 200 tLrhd~e~qavLiN~LLr~yL~n~lydqa~~l------vsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa 273 (493)
T KOG2581|consen 200 TLRHDEEGQAVLINLLLRNYLHNKLYDQADKL------VSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQA 273 (493)
T ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHH------hhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHH
Confidence 34444444445567788889988999999776 56677885554 56777888999999999999999999998
Q ss_pred HH
Q 012829 418 VE 419 (455)
Q Consensus 418 ~~ 419 (455)
+.
T Consensus 274 ~r 275 (493)
T KOG2581|consen 274 LR 275 (493)
T ss_pred HH
Confidence 86
No 323
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=63.60 E-value=12 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
.+.+.++.++...|+++.|..++..+.+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567788999999999999998877654
No 324
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.55 E-value=33 Score=25.38 Aligned_cols=48 Identities=33% Similarity=0.186 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH-HHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE-LILKLE 440 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~-~~~~l~ 440 (455)
.|..+.+-|.-.-..|++++|..+|..|++.+... ..|...+ ++.++.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~e---kn~~~k~~i~~K~~ 53 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINT---SNETMDQALQTKLK 53 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHh---cChhhHHHHHHHHH
Confidence 45666677777788999999999999999988884 3444433 445553
No 325
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=63.43 E-value=49 Score=24.42 Aligned_cols=54 Identities=22% Similarity=0.177 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc-cCCCChhHHHHH-HHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTNSPFMKELI-LKLEEA 442 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~-~G~~hp~~~~~~-~~l~~~ 442 (455)
..|..+...|.-.-..|++++|...|..|++.+... -+...|..++.+ .+..+-
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eY 59 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEY 59 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 345667777777778899999999999999998885 466677666633 444433
No 326
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=63.20 E-value=41 Score=24.71 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc-CCCChhHHH-HHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKE-LILKLEEA 442 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~-G~~hp~~~~-~~~~l~~~ 442 (455)
.|..+..-|.-.-..|++++|..+|.+|++.+.... ....|..+. +..+..+-
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~ey 59 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEY 59 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 456667777778889999999999999999988764 233444433 33444443
No 327
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=63.17 E-value=42 Score=24.53 Aligned_cols=37 Identities=19% Similarity=0.053 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccC
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 426 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G 426 (455)
.|..+.+-|.-.-..|++++|..+|..|++.+.....
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~ 41 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALK 41 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3555666677777889999999999999998887653
No 328
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=62.91 E-value=66 Score=36.04 Aligned_cols=67 Identities=19% Similarity=0.155 Sum_probs=44.9
Q ss_pred HHHHhhhhHHhhcC-CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 371 YCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 371 ~~~~~l~~~~~~~g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
.+..++..++++.+ +.-| +.|..-|.+|..+|+++|-++.|.-|++-+ +.||....++..+-.=..|
T Consensus 534 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 534 DFTQALSEFSYLHGGVGAP---LEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred HHHHHHHHHHHhcCCCCCc---hHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHH
Confidence 34445556666665 4444 445555667888999999999999998733 6788877766655544333
No 329
>PF12854 PPR_1: PPR repeat
Probab=62.89 E-value=14 Score=22.39 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHh
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLT 375 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~ 375 (455)
.+++.|...|.+.|++++|.++.+++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45677899999999999999987653
No 330
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=62.77 E-value=1.6e+02 Score=29.32 Aligned_cols=96 Identities=8% Similarity=0.013 Sum_probs=54.3
Q ss_pred ccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhh---cCCcHHHHHHHHH
Q 012829 340 LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF---LGDTENAIKSMTE 416 (455)
Q Consensus 340 ~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~---~g~~~eA~~~l~~ 416 (455)
.++.......+...+|.-.|.+.++|+.=+.+.+.+-.+ ...-...+|.+ .+..|-.+.. .|+.++|+..+..
T Consensus 132 rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~~~~~~~i---~~~yafALnRrn~~gdre~Al~il~~ 207 (374)
T PF13281_consen 132 RLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCDVANQHNI---KFQYAFALNRRNKPGDREKALQILLP 207 (374)
T ss_pred hhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-CccchhcchHH---HHHHHHHHhhcccCCCHHHHHHHHHH
Confidence 344333444456667888899999998766664443221 11112334433 4444555656 7888888888777
Q ss_pred HHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829 417 AVEILRITHGTNSPFMKELILKLEEAQAEA 446 (455)
Q Consensus 417 A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~ 446 (455)
++. ++.+.-.|+...+..+.+++
T Consensus 208 ~l~-------~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 208 VLE-------SDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred HHh-------ccCCCChHHHHHHHHHHHHH
Confidence 643 23333345555555555544
No 331
>PRK11906 transcriptional regulator; Provisional
Probab=62.69 E-value=1.5e+02 Score=30.24 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=71.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
++-.+....-.++++.|..+++++..+ +|..+.+....+.+..-.|+.++|.++.++++..- |.
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--------P~ 404 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--------PR 404 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------ch
Confidence 333344334455677888887777654 56677777778888888999999999999887732 43
Q ss_pred -HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 390 -LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 390 -~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
.+....++=.=.+.-...++|+++|-+ .+-.+.|..+.+-+.+|+++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 452 (458)
T PRK11906 405 RRKAVVIKECVDMYVPNPLKNNIKLYYK------ETESESHRVIIDNILKLKQL 452 (458)
T ss_pred hhHHHHHHHHHHHHcCCchhhhHHHHhh------ccccccchhhHHHHHHHHHH
Confidence 344444444412334456777776533 34456687777776666654
No 332
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=62.14 E-value=42 Score=32.53 Aligned_cols=71 Identities=24% Similarity=0.348 Sum_probs=51.4
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
...++.+...++.+....|.++.|..+..++.... +..+.......+.-++++|..|+..+|+..+++.+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~----~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLN----PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC----CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556777788999999999999988766654422 122211223355668899999999999999988887
No 333
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=61.81 E-value=1e+02 Score=26.26 Aligned_cols=92 Identities=21% Similarity=0.225 Sum_probs=67.0
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
....+++++++..+...+...... .......++..+...+++..|..+...++..... ....+..
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~ 241 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAEALYN 241 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHHHHhh
Confidence 344567788888777776543221 4555677888888889999999998888876554 4455666
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 397 CGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
++..+...|.++++...+.+++.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 666766777899999999998887665
No 334
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=61.42 E-value=51 Score=35.79 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=29.5
Q ss_pred HHHHHHhhhhH-HhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch-------hccCCCCh
Q 012829 369 LAYCQLTIPVY-QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR-------ITHGTNSP 430 (455)
Q Consensus 369 ~~~~~~~l~~~-~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~-------~~~G~~hp 430 (455)
..+++..+..+ +..|||+.. |+.+.......++|++..++..++++ ..+||..-
T Consensus 617 ~~F~~~El~~Rk~~~~PPf~~--------l~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlGP~~a 678 (730)
T COG1198 617 EAFYEQELAERKELGLPPFSR--------LAAVIASAKNEEKALEFARALRELLKEALPVDVEVLGPAPA 678 (730)
T ss_pred HHHHHHHHHHHHhcCCCChhh--------heeeEecCCCHHHHHHHHHHHHHHHHhcccccceeeCCCcc
Confidence 34555556655 345665443 33444555666667776666554444 45666543
No 335
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=61.05 E-value=92 Score=29.54 Aligned_cols=80 Identities=13% Similarity=0.046 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
+..+.+.+..+...|+++.+.+.+++..+. |+.-=..+..|+..|...|+...|+..|+++-.....-+|..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~ 224 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID 224 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC
Confidence 445556667777888888888777666542 444445677789999999999999999999888777677743
Q ss_pred ChHHHHHH
Q 012829 387 HPLLGLQY 394 (455)
Q Consensus 387 hp~~~~~l 394 (455)
-......+
T Consensus 225 P~~~~~~~ 232 (280)
T COG3629 225 PAPELRAL 232 (280)
T ss_pred ccHHHHHH
Confidence 33333333
No 336
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.94 E-value=76 Score=30.76 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHH-HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQ-TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~-~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
++..-+++..++...+|..|+..|...++... .++.+.. .+.|=+.+-...|+|..|+.-|.+++. +-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc-----~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~-----~~P 150 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKC-----ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK-----LKP 150 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC-----CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-----cCc
Confidence 33344445555555678888888877766432 2444443 344555566677999999999888776 334
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 418 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~ 418 (455)
.| .-.++.-|+.+..+.++.+|..+.++.+
T Consensus 151 ~h---~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 151 TH---LKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred ch---hhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 44 5667888888888888888877765433
No 337
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=60.10 E-value=2.3 Score=30.51 Aligned_cols=31 Identities=29% Similarity=0.697 Sum_probs=20.6
Q ss_pred CccCCCCCCcccccCCCCCCcccCCCCCcCCHHHH
Q 012829 266 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEI 300 (455)
Q Consensus 266 ~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~ 300 (455)
|+| +|+.++..+.+.++-+| .||......++
T Consensus 4 frC---~Cgr~lya~e~~kTkkC-~CG~~l~vk~~ 34 (68)
T PF09082_consen 4 FRC---DCGRYLYAKEGAKTKKC-VCGKTLKVKER 34 (68)
T ss_dssp EEE---TTS--EEEETT-SEEEE-TTTEEEE--SS
T ss_pred EEe---cCCCEEEecCCcceeEe-cCCCeeeeeeE
Confidence 677 48888887778888899 99998765543
No 338
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.86 E-value=1.2e+02 Score=29.22 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC--CCh-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ--FHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~--~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
.+...+..||.+|-.-++|+.|...+ ...+.--|+ +.. ..+..+.++|.+|...++..+|+.+..||--.+..
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L----~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~ 176 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVL----VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE 176 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH----hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence 45667888999999999999987653 333322332 122 34566779999999999999999998887654444
Q ss_pred c
Q 012829 424 T 424 (455)
Q Consensus 424 ~ 424 (455)
+
T Consensus 177 ~ 177 (399)
T KOG1497|consen 177 S 177 (399)
T ss_pred c
Confidence 4
No 339
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=59.26 E-value=1.6e+02 Score=31.14 Aligned_cols=89 Identities=13% Similarity=0.202 Sum_probs=60.6
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829 318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 397 (455)
Q Consensus 318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 397 (455)
.+..+|++|+.-|+-++.+ .++|..+ ...|+-.-..+|+++-.++--.+.+. .-|..-..+..+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~-----~~dN~qi---lrDlslLQ~QmRd~~~~~~tr~~LLq--------l~~~~ra~w~~~ 149 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKI-----EKDNLQI---LRDLSLLQIQMRDYEGYLETRNQLLQ--------LRPSQRASWIGF 149 (700)
T ss_pred hhhhhHHHHHHHHHHHHhc-----CCCcHHH---HHHHHHHHHHHHhhhhHHHHHHHHHH--------hhhhhHHHHHHH
Confidence 4556888999888888763 4555544 44566566667888766665444444 224445667788
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 398 GKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 398 a~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
|..+...|.+..|.+.+++-.....
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999998777665444
No 340
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=59.19 E-value=6.8 Score=27.47 Aligned_cols=29 Identities=24% Similarity=0.607 Sum_probs=16.1
Q ss_pred CccCCCCCCcccccCCCCCC--cccCCCCCc
Q 012829 266 YRCKDDGCSGFLLRDSDDKG--FTCQQCGLV 294 (455)
Q Consensus 266 ~~C~~~~C~g~~~~~~~~~~--~~C~~C~~~ 294 (455)
..||.++|++.+..+.+... ..|..|+..
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~ 49 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTE 49 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSE
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCc
Confidence 47998889888776655544 778877753
No 341
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=58.86 E-value=19 Score=28.00 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred EEEEEEecccCCCCeeEEeecCCC
Q 012829 202 LAVVRAVQHVPKGAEVLISYIETA 225 (455)
Q Consensus 202 ~~~v~a~r~I~~GeEi~isY~~~~ 225 (455)
.+.+--.++|..|++++++|.+..
T Consensus 76 tVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 76 TITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred EEEEEecccccCCCEEEEEeeCCC
Confidence 778888899999999999998764
No 342
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=58.78 E-value=96 Score=26.52 Aligned_cols=109 Identities=14% Similarity=0.021 Sum_probs=63.4
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcc------cC--------------C---------c--cccHHHHHHHHHHHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKL------YH--------------P---------F--SVNLMQTREKLIKILM 360 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~------l~--------------~---------~--~~~~~~~~~~L~~~~~ 360 (455)
..|......|+.++|.....++..+...+ +- | . ...-....-.-+...+
T Consensus 7 ~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l 86 (155)
T PF10938_consen 7 QKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELL 86 (155)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHH
Confidence 34556677888888888877766543211 11 1 0 1222234445566778
Q ss_pred hcccHHHHHHHHHHh---hhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 361 ELEDWKEALAYCQLT---IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 361 ~~g~~~~A~~~~~~~---l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
..|+.+.|.+.++.+ +......+| ...--.-.+.|.-+...|++.+|-..|..|++-+..
T Consensus 87 ~~g~~~~A~~~L~~~~~ei~~~~~~lP---L~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~lv~ 149 (155)
T PF10938_consen 87 KKGDKQAAREILKLAGSEIDITTALLP---LAQTPAAVKQAAALLDEGKYYEANAALKQALDGLVF 149 (155)
T ss_dssp HTT-HHHHHHHHHHTT-EEEEEEEEEE---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-EE
T ss_pred hCCCHHHHHHHHHHhcccceeeeeeCC---HHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcCeEE
Confidence 889999998887755 223333444 111122334566778999999999999999976543
No 343
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.76 E-value=1.2e+02 Score=31.10 Aligned_cols=96 Identities=10% Similarity=0.027 Sum_probs=68.0
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 395 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 395 (455)
-.+.++++.||....++.+++.. .-..+...+....-|+.+....|+-.++...-+.++...+++ ++||.-.+...
T Consensus 454 faf~qn~lnEaK~~l~e~Lkman--aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~s 529 (629)
T KOG2300|consen 454 FAFKQNDLNEAKRFLRETLKMAN--AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSS 529 (629)
T ss_pred HHHHhccHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHH
Confidence 34567789999888777776531 111233444555667788888999999999888888877765 57888888888
Q ss_pred HHHHHhhhcCC--cHHHHHHHH
Q 012829 396 TCGKLEWFLGD--TENAIKSMT 415 (455)
Q Consensus 396 ~La~l~~~~g~--~~eA~~~l~ 415 (455)
-+-.++...|+ .+++.+.+.
T Consensus 530 i~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 530 ILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHHHhCcchhhHHHHHHH
Confidence 88889999988 444444433
No 344
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=58.58 E-value=85 Score=29.78 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 428 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 428 (455)
+.++..++..+...|+++.+.+..++.+. -||..--.+..|=..|...|+...|+..|.+....+...+|.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~ 224 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID 224 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC
Confidence 44566688888889999999888777665 4455445566666788999999999999999999999999988
Q ss_pred Ch
Q 012829 429 SP 430 (455)
Q Consensus 429 hp 430 (455)
-+
T Consensus 225 P~ 226 (280)
T COG3629 225 PA 226 (280)
T ss_pred cc
Confidence 55
No 345
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.43 E-value=82 Score=29.04 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=5.1
Q ss_pred ChHHHHHHHHHH
Q 012829 322 NHQEVVSTYKMI 333 (455)
Q Consensus 322 ~~~~a~~~~~~~ 333 (455)
++++|.+++.++
T Consensus 29 k~eeAadl~~~A 40 (288)
T KOG1586|consen 29 KYEEAAELYERA 40 (288)
T ss_pred chHHHHHHHHHH
Confidence 344444444443
No 346
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=58.39 E-value=1.5e+02 Score=28.50 Aligned_cols=112 Identities=15% Similarity=0.053 Sum_probs=72.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhh-hHHhhc------
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP-VYQRVY------ 383 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~-~~~~~~------ 383 (455)
..-|......|.++-|...+..+.... ...+.....+...-+......|+..+|+...+..+. ......
T Consensus 150 l~~a~~aRk~g~~~~A~~~l~~~~~~~----~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 150 LKFAKLARKAGNFQLALSALNRLFQLN----PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHhccC----CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 344555667888888887766554321 111111233344456677788999999998887777 222221
Q ss_pred -------------------CCCChHHHHHHHHHHHHhhhc------CCcHHHHHHHHHHHHhchhccC
Q 012829 384 -------------------PQFHPLLGLQYYTCGKLEWFL------GDTENAIKSMTEAVEILRITHG 426 (455)
Q Consensus 384 -------------------g~~hp~~~~~l~~La~l~~~~------g~~~eA~~~l~~A~~i~~~~~G 426 (455)
...-...+..+..+|+..... +..+++.+.+.+|..+....+-
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 112234677888888888888 8889999999999987554443
No 347
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=58.34 E-value=1.6e+02 Score=34.29 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
..+..|..+|...+.+++|.++++.++.-+ + .-+ ..+...|..++.+.+-++|...|.+|+.-+-+
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF----~-q~~---~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKF----G-QTR---KVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHh----c-chh---hHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 345568889999999999999888876633 3 222 33445577778888888999999999976655
No 348
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.23 E-value=1.5e+02 Score=27.71 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHH-HHHHHHHHhhhhHH-hhcCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWK-EALAYCQLTIPVYQ-RVYPQ 385 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~-~A~~~~~~~l~~~~-~~~g~ 385 (455)
.-+..-|..+...|.+..+.++....++..+..-.+ .--....+|+.+....+.-+ +-..+..+++.-.+ .-.+.
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~---~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~ 87 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDP---VDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKF 87 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCC
Confidence 334445556667777777777665555543331111 11223455666555443211 23344445544331 12335
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHH
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~ 415 (455)
.||.+ ...+|..++..|++.+|+.++-
T Consensus 88 Gdp~L---H~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPEL---HHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHH---HHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHH---HHHHHHHHHhhccHHHHHHHHH
Confidence 66655 6678999999999999999875
No 349
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.10 E-value=1.2e+02 Score=32.14 Aligned_cols=111 Identities=15% Similarity=0.088 Sum_probs=66.2
Q ss_pred hhcccCCccccHHHHHHHHHHHH-HhcccHHH-------HHHHHHHhhhhHHhhcCCCChH-----HHHHHHHHHHHhhh
Q 012829 337 QKKLYHPFSVNLMQTREKLIKIL-MELEDWKE-------ALAYCQLTIPVYQRVYPQFHPL-----LGLQYYTCGKLEWF 403 (455)
Q Consensus 337 ~~~~l~~~~~~~~~~~~~L~~~~-~~~g~~~~-------A~~~~~~~l~~~~~~~g~~hp~-----~~~~l~~La~l~~~ 403 (455)
+..--+|.-+.+.....+|..+- -..|+.+. -..+++.++...++. .+.|. ++..-+|.|.++..
T Consensus 744 ~~~~aspe~~~~~lc~~~LI~l~~V~~G~~~vEl~iL~~v~~~~~i~~s~~~~t--~~YP~~E~~WLa~~~WN~gvL~~~ 821 (872)
T KOG4814|consen 744 RNMGASPEVKERELCSWLLILLENVINGNHEVELRILDRVLKILNINQSSLQDT--DGYPQTELEWLATYCWNIGVLYII 821 (872)
T ss_pred HhcCCCCCccHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHhhhhc--CCCcHHHHHHHHHHHhhhheeeee
Confidence 33334555555555555554433 22344332 233333333333321 33444 46667789999999
Q ss_pred cCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhhh
Q 012829 404 LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL 450 (455)
Q Consensus 404 ~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~~ 450 (455)
.|+++.|++.+.-++.+....-|.+.- -......++.....+|.+-
T Consensus 822 ~~~~~~A~KWc~~~L~fan~vTgme~Y-~~qM~~l~~~l~~~~S~~~ 867 (872)
T KOG4814|consen 822 KDNKSNAIKWCKHSLGFANMVTGMEGY-QEQMYSLWESLASSASIDI 867 (872)
T ss_pred ccchhhHHHHHHHHHHHHhhhcchhHH-HHHHHHHHHHHHHHHhccc
Confidence 999999999999999999988888763 2334444555555555543
No 350
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.04 E-value=36 Score=30.49 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=45.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
.+.|..++..++++.|+.-+.+++++ ++...+++..=|.+|-....|++|++-+.++++
T Consensus 138 ~Nraaa~iKl~k~e~aI~dcsKaiel--------~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 138 SNRAAALIKLRKWESAIEDCSKAIEL--------NPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred hhhHHHHHHhhhHHHHHHHHHhhHhc--------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34566667778899999888888765 445556666667789889999999999888776
No 351
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.90 E-value=94 Score=33.18 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=57.2
Q ss_pred cCCccccHHHHHHHHHHHHH-hcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 341 YHPFSVNLMQTREKLIKILM-ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 341 l~~~~~~~~~~~~~L~~~~~-~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
+.+....-+.++..|+.++. ...++++|..+..+++.+.++ +...-..-..-+-++.++...+... |...+.++++
T Consensus 51 ~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~ 127 (608)
T PF10345_consen 51 FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE 127 (608)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence 33333444567778998887 678999999999999998877 3332222333345588888887777 9999999888
Q ss_pred hchh
Q 012829 420 ILRI 423 (455)
Q Consensus 420 i~~~ 423 (455)
..+.
T Consensus 128 ~~~~ 131 (608)
T PF10345_consen 128 DSET 131 (608)
T ss_pred HHhc
Confidence 7766
No 352
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=57.86 E-value=5.4 Score=37.46 Aligned_cols=34 Identities=24% Similarity=0.756 Sum_probs=24.4
Q ss_pred ccccCcCCCcCCCCC-----CccccCCHHHhHhhhhhhHH
Q 012829 31 DGCFASSNLKKCSAC-----QVVWYCGSNCQKLDWKLHRL 65 (455)
Q Consensus 31 ~~C~~~~~~~~C~~C-----~~~~yCs~~C~~~~~~~H~~ 65 (455)
..|.++.. ..|+.| +-.+||+++|.+..|..|+.
T Consensus 12 ~~c~~~a~-l~Cp~c~~~~i~~~~fc~q~cf~~~w~~hK~ 50 (369)
T KOG2738|consen 12 LQCGSEAS-LQCPTCLKLGIKSAYFCAQECFKNSWLSHKK 50 (369)
T ss_pred cccCChhh-ccCchhhhcCCCcccccCchhhhcchhhhhh
Confidence 56666543 667766 22579999999999987754
No 353
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=57.71 E-value=66 Score=34.54 Aligned_cols=36 Identities=19% Similarity=-0.014 Sum_probs=22.4
Q ss_pred hhcCCCChHH-HHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829 381 RVYPQFHPLL-GLQYYTCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 381 ~~~g~~hp~~-~~~l~~La~l~~~~g~~~eA~~~l~~ 416 (455)
++.+..||.. --....+|+-+...|+..+|+..+-+
T Consensus 871 rlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 871 RLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 4455666653 33445677777777877777765544
No 354
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=57.56 E-value=47 Score=32.26 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=31.1
Q ss_pred HHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829 355 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 399 (455)
Q Consensus 355 L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 399 (455)
-+..|..+|.|++|++.|-+.+..+. .-|-.|..+++.|+++-.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~ 146 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKS 146 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHH
Confidence 45678999999999999999888553 112344556777776633
No 355
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=57.04 E-value=8.9 Score=21.48 Aligned_cols=22 Identities=23% Similarity=0.676 Sum_probs=12.7
Q ss_pred CCCcccccCCCCCCcccCCCCC
Q 012829 272 GCSGFLLRDSDDKGFTCQQCGL 293 (455)
Q Consensus 272 ~C~g~~~~~~~~~~~~C~~C~~ 293 (455)
+|+..+.|......+.|++||.
T Consensus 3 sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 3 SCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred cCCCcccCcccCceEeCCCCCC
Confidence 3555555444455677777773
No 356
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=56.47 E-value=6.3 Score=39.30 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=24.2
Q ss_pred eCCEEEEEEecccCCCCeeEEeecCCCC
Q 012829 199 EGRLAVVRAVQHVPKGAEVLISYIETAG 226 (455)
Q Consensus 199 ~~~~~~v~a~r~I~~GeEi~isY~~~~~ 226 (455)
.|+.+-.+|+|+|++||||.+=|++.++
T Consensus 120 ~~~~Ifyrt~r~I~p~eELlVWY~~e~~ 147 (396)
T KOG2461|consen 120 IGENIFYRTIRDIRPNEELLVWYGSEYA 147 (396)
T ss_pred ccCceEEEecccCCCCCeEEEEeccchH
Confidence 3667889999999999999999987653
No 357
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=55.42 E-value=88 Score=34.30 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=11.7
Q ss_pred HHHHHHhcccHHHHHHHHHHhhh
Q 012829 355 LIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 355 L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
|-.+|.+++++++|..+++++..
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHh
Confidence 44445555555555555555443
No 358
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=55.23 E-value=8.5 Score=30.73 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=19.0
Q ss_pred CCccCccccCc---C--CCcCCCCCCcc
Q 012829 26 SISRCDGCFAS---S--NLKKCSACQVV 48 (455)
Q Consensus 26 ~~~~C~~C~~~---~--~~~~C~~C~~~ 48 (455)
..++|..|.++ + .++.||.|+..
T Consensus 8 tKR~Cp~CG~kFYDLnk~PivCP~CG~~ 35 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNKDPIVCPKCGTE 35 (108)
T ss_pred CcccCCCCcchhccCCCCCccCCCCCCc
Confidence 47899999998 3 48889999875
No 359
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=54.56 E-value=80 Score=33.54 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=8.7
Q ss_pred HHHHHHhcccHHHHHHHH
Q 012829 355 LIKILMELEDWKEALAYC 372 (455)
Q Consensus 355 L~~~~~~~g~~~~A~~~~ 372 (455)
+++++-.+++.+.|.+-|
T Consensus 691 lGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAY 708 (913)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 455555555554444433
No 360
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=54.24 E-value=45 Score=30.94 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-cccHHHHHHHHHHhhhhH
Q 012829 324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVY 379 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~ 379 (455)
+.|...|+.+.++...-++|.||..+.+.-+.+.-|.. +++-++|..+.+.+.+-.
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 46788899998887778999999999888777666554 588899998888776633
No 361
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.98 E-value=68 Score=31.17 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=62.1
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
+...|-+++|.+.-.+++++ |+.=.-+.+.++.++-..|+++++.++-.+.-+.++ .......+-++.
T Consensus 185 L~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr----~s~mlasHNyWH 252 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR----QSWMLASHNYWH 252 (491)
T ss_pred HHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh----hhhHHHhhhhHH
Confidence 44567788888877777655 222234455677788888999999998777666554 233344566777
Q ss_pred HHHHhhhcCCcHHHHHHHHH
Q 012829 397 CGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~~ 416 (455)
.|.-+.+.++|+.|++.|.+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHhhhcccchhHHHHHHHH
Confidence 78888888999999988875
No 362
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=52.59 E-value=8.6 Score=26.50 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=17.7
Q ss_pred CccCccccCcCCCcCCCCCCccccCCHHHhH
Q 012829 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQK 57 (455)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~ 57 (455)
..+|-.|.+..+. ...+||++|+.
T Consensus 8 H~HC~VCg~aIp~-------de~~CSe~C~e 31 (64)
T COG4068 8 HRHCVVCGKAIPP-------DEQVCSEECGE 31 (64)
T ss_pred CccccccCCcCCC-------ccchHHHHHHH
Confidence 4788888887542 23589999985
No 363
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=52.46 E-value=67 Score=24.01 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
.+....++|...-..|..++|+..|++.+.....-+.-..+ .......|+.|..+-+++..
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~-----------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVP-----------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC-----------cccccHHHHHHHHHHHHHHH
Confidence 34455566777777899999999999887754332221111 12233467777777666544
No 364
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=52.44 E-value=2.8e+02 Score=28.55 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
..+..+++||.++..+|++++|.+.+.+|..++.
T Consensus 617 Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 617 ARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999998766
No 365
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=52.16 E-value=91 Score=22.81 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL 340 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~ 340 (455)
..+..+...|...-..|++++|+.+|..+++.....
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 345566667777778899999999999988865443
No 366
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=51.17 E-value=1.4e+02 Score=24.56 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=49.0
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-----cHH--HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-----NLM--QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-----~~~--~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 384 (455)
|...+..+++-.++-.|++++.+...+.-.+.. .++ -+.++||.-+..+||-+-.++|++-+-+-.-.+.|
T Consensus 8 Ad~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiP 85 (140)
T PF10952_consen 8 ADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIP 85 (140)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhcc
Confidence 344455667777777777777766555322221 222 35689999999999999999999988777766666
No 367
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=50.92 E-value=1.2e+02 Score=24.82 Aligned_cols=83 Identities=17% Similarity=0.096 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhhHHhh------cCCCChH--HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIPVYQRV------YPQFHPL--LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~------~g~~hp~--~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
..+++.+++..|+.+....+.++...+-..- +++.+|. +...|..++..+...|++..|++++..-.+.+.+
T Consensus 5 ~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I 84 (126)
T PF12921_consen 5 LCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPI 84 (126)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCC
Confidence 4456677788888887777776654433221 5555554 2567888888999999999999998888877773
Q ss_pred ccCCCChhHHHHH
Q 012829 424 THGTNSPFMKELI 436 (455)
Q Consensus 424 ~~G~~hp~~~~~~ 436 (455)
. .+ +.+..+++
T Consensus 85 ~-i~-~~~W~~Ll 95 (126)
T PF12921_consen 85 P-IP-KEFWRRLL 95 (126)
T ss_pred C-CC-HHHHHHHH
Confidence 3 22 55555554
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=50.54 E-value=1.9e+02 Score=25.97 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=45.3
Q ss_pred CccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHH
Q 012829 343 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENA 410 (455)
Q Consensus 343 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA 410 (455)
..-.....+...||..|. ..|-++|..++.++++.+..-- ..+|.+ +..||.++..+|+++.|
T Consensus 135 ~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~-~~n~ei---l~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 135 TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD-NFNPEI---LKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC-CCCHHH---HHHHHHHHHHhcchhhh
Confidence 334455677778887666 5577899999999888654211 334444 77889999999999987
No 369
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=50.50 E-value=36 Score=35.85 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=31.4
Q ss_pred HHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829 357 KILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 418 (455)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~ 418 (455)
+...+.|+|.+|..+.++. |+.-|. .++.-|+.+.+..+++||.+.+.+|-
T Consensus 781 qlHve~~~W~eAFalAe~h--------Pe~~~d---Vy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKH--------PEFKDD---VYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hheeecccchHhHhhhhhC--------cccccc---ccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 4445668888888776552 333232 24455666677777777777776653
No 370
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=50.37 E-value=30 Score=34.23 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829 366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 439 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l 439 (455)
..|+.|++++.. .--|.....+|-++..||+++-. +-.+=+++|++|-+|+.+.-+..|-.+.+++..|
T Consensus 335 ~~Al~yL~kA~d---~ddPetWv~vAEa~I~LGNL~d~--eS~eQe~~Y~eAE~iL~kAN~at~GKy~diLdnL 403 (404)
T PF12753_consen 335 KKALEYLKKAQD---EDDPETWVDVAEAMIDLGNLYDN--ESKEQEKAYKEAEKILKKANKATNGKYQDILDNL 403 (404)
T ss_dssp HHHHHHHHHHHH---S--TTHHHHHHHHHHHHHHH-SS--HHH-HHHHHHHHHHHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHHhhc---cCChhHHHHHHHHHhhhhccccc--chHHHHHHHHHHHHHHHHHhhccccchHHHHhhc
Confidence 455556555544 22233333456666666666432 2233466788888888888888888888888765
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.23 E-value=1.4e+02 Score=29.62 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=50.4
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC-CCCh--------------------HHHHHHHHHHHHhhh
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHP--------------------LLGLQYYTCGKLEWF 403 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~hp--------------------~~~~~l~~La~l~~~ 403 (455)
||+-++++-.++.++..+|+++.|.++.+++|-.+++.+. ..++ ..=..++...+.+..
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 5666777888999999999999999999999999996554 2311 122445555666667
Q ss_pred cCCcHHHHHH
Q 012829 404 LGDTENAIKS 413 (455)
Q Consensus 404 ~g~~~eA~~~ 413 (455)
.|-+..|.++
T Consensus 116 RG~~rTAlE~ 125 (360)
T PF04910_consen 116 RGCWRTALEW 125 (360)
T ss_pred cCcHHHHHHH
Confidence 7777777665
No 372
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=50.20 E-value=4.4 Score=24.90 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=13.1
Q ss_pred ccCccccCcCC----------CcCCCCCCcccc
Q 012829 28 SRCDGCFASSN----------LKKCSACQVVWY 50 (455)
Q Consensus 28 ~~C~~C~~~~~----------~~~C~~C~~~~y 50 (455)
.+|..|..++. -..|+.|+++.|
T Consensus 1 kfC~~CG~~l~~~ip~gd~r~R~vC~~Cg~IhY 33 (34)
T PF14803_consen 1 KFCPQCGGPLERRIPEGDDRERLVCPACGFIHY 33 (34)
T ss_dssp -B-TTT--B-EEE--TT-SS-EEEETTTTEEE-
T ss_pred CccccccChhhhhcCCCCCccceECCCCCCEEe
Confidence 36888988742 356999998876
No 373
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=49.96 E-value=1.9e+02 Score=28.49 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhhhHHhhcCCCChHHH-H-HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 365 WKEALAYCQLTIPVYQRVYPQFHPLLG-L-QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 365 ~~~A~~~~~~~l~~~~~~~g~~hp~~~-~-~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
.+..+.-.+..+..|+.-.|-..|... . ..-.++.+ ..+..+++ .-+.-++..+|++||.+..+...++.+
T Consensus 182 ~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L---~~~l~~~~----~~l~~l~~~~~~~~P~v~~l~~~i~~l 254 (362)
T TIGR01010 182 AEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTL---EGELIRVQ----AQLAQLRSITPEQNPQVPSLQARIKSL 254 (362)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHhhCCCCCCchHHHHHHHHHH
Confidence 344444445556666666666566442 1 11122222 22233333 233334557889999999999999888
Q ss_pred HHHHhhhh
Q 012829 443 QAEASYKL 450 (455)
Q Consensus 443 ~~~~~~~~ 450 (455)
+.++....
T Consensus 255 ~~~i~~e~ 262 (362)
T TIGR01010 255 RKQIDEQR 262 (362)
T ss_pred HHHHHHHH
Confidence 88776543
No 374
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.86 E-value=1e+02 Score=22.79 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhc
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 339 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~ 339 (455)
.+..+...|...-..|++++|+..|+.+++....
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4455566777777889999999999998886544
No 375
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=49.78 E-value=2.1e+02 Score=30.77 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=35.3
Q ss_pred CCccccHHHHHHHHHHHHHhcccHHHHHHHHHHh------------------hhhHHhhcCCCChHH
Q 012829 342 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLT------------------IPVYQRVYPQFHPLL 390 (455)
Q Consensus 342 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~------------------l~~~~~~~g~~hp~~ 390 (455)
+.++..+-.+..+++..+.++..|++|.+|+... ++..-+.+|.+||.+
T Consensus 789 d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~ll 855 (1189)
T KOG2041|consen 789 DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELL 855 (1189)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchH
Confidence 4445555677788999999999999999987652 333346788888764
No 376
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.56 E-value=35 Score=21.12 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=18.7
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHH
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMT 415 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~ 415 (455)
.++.+|-.+...|++++|++.++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 35678889999999999999955
No 377
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.54 E-value=1.8e+02 Score=30.72 Aligned_cols=92 Identities=10% Similarity=0.027 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhhHHhh--c--CCCChHHHH--------HHHHHHH-HhhhcCCcHHHHHHHHHH-
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIPVYQRV--Y--PQFHPLLGL--------QYYTCGK-LEWFLGDTENAIKSMTEA- 417 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~--~--g~~hp~~~~--------~l~~La~-l~~~~g~~~eA~~~l~~A- 417 (455)
...|+.+.+..|++..|.+-..++.+.---+ + ..+++.+.. -.+|+|- .++..|+++++.++|.+.
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 4568888888899888888777664422211 1 123332210 0112222 256789999999998886
Q ss_pred ----HHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 418 ----VEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 418 ----~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
...+-++|+| ..+.++.....+-...
T Consensus 749 r~peAal~ArtYlp--s~vs~iv~~wk~~l~k 778 (794)
T KOG0276|consen 749 RLPEAALFARTYLP--SQVSRIVELWKEDLSK 778 (794)
T ss_pred cCcHHHHHHhhhCh--HHHHHHHHHHHHHhhh
Confidence 4566778888 3456666555544433
No 378
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=48.57 E-value=99 Score=27.21 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc----cHHHHHHHHHHhhhhHHhh
Q 012829 324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE----DWKEALAYCQLTIPVYQRV 382 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g----~~~~A~~~~~~~l~~~~~~ 382 (455)
++|++-++.++.+ +|...+++.+|+.+|...+ +-.+|.+++.++.+-+++.
T Consensus 52 edAisK~eeAL~I--------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 52 EDAISKFEEALKI--------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 3455555555544 5666778888888887764 3456666666666655543
No 379
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=48.56 E-value=2e+02 Score=25.79 Aligned_cols=142 Identities=20% Similarity=0.119 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhh---cccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 012829 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQK---KLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL 374 (455)
Q Consensus 298 ~~~~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~---~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 374 (455)
+.+.++..++..+...+.....++++++|.+.+..+.+... ..+.+ ++.+.- ...+....+.|-+|+.++.-
T Consensus 21 E~iik~sRdI~~~Sk~~I~~lHr~~~~~a~~~l~~a~~~~~~l~~~~~~-~~~~~y----~~~~~~~lQEyvEA~~f~~~ 95 (204)
T PRK14562 21 EEALKLSREIVRLSGDAIRAIHRGDFEEAEKLLKEAEELVKELKELLKD-HPELYY----AGYVGTALQEYVEALLVYSL 95 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcc-Cchhhh----hhhcchHHHHHHHHHHHHHH
Confidence 34455566777776666666677788888777666555332 22332 443310 01122234566666666443
Q ss_pred hhhhHHhhcCC---CChHHHHHH----------HHHHHHhhhcCCcHHHHHHHHHHHHhchhc--cCCCChhHHHHHHHH
Q 012829 375 TIPVYQRVYPQ---FHPLLGLQY----------YTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKL 439 (455)
Q Consensus 375 ~l~~~~~~~g~---~hp~~~~~l----------~~La~l~~~~g~~~eA~~~l~~A~~i~~~~--~G~~hp~~~~~~~~l 439 (455)
.-. .-+|. -|......+ ..++.-....|+++.|..++.=--+++... +...+..+.++..++
T Consensus 96 l~~---~~l~s~eel~v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~~~~i~~fm~~ly~~~~~l~~~~~~~~~LRkK~ 172 (204)
T PRK14562 96 LFE---NKIPSPEELGVPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLEIMEEIYEFLMTLDYPDAITPGLRRKQ 172 (204)
T ss_pred HcC---CCCCCHHHcCCCHHHHHhHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHH
Confidence 321 11110 111112222 222333345789999888655433333333 333344555666666
Q ss_pred HHHHHHHh
Q 012829 440 EEAQAEAS 447 (455)
Q Consensus 440 ~~~~~~~~ 447 (455)
.-++..+.
T Consensus 173 D~~r~~le 180 (204)
T PRK14562 173 DVARSLLE 180 (204)
T ss_pred HHHHHHHH
Confidence 66555443
No 380
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.39 E-value=2.5e+02 Score=26.78 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=23.2
Q ss_pred hhhcCChHHHHHHHHHHHHH----hhcccCCccccHHHHHHHHHHHHHhcccH
Q 012829 317 LTSCGNHQEVVSTYKMIEKL----QKKLYHPFSVNLMQTREKLIKILMELEDW 365 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~----~~~~l~~~~~~~~~~~~~L~~~~~~~g~~ 365 (455)
.....++++|+..|++++.. .++.+.+ --.+..+|+..|...|++
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nE----qE~tvlel~~lyv~~g~~ 61 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNE----QEATVLELFKLYVSKGDY 61 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhH----HHHHHHHHHHHHHhcCCc
Confidence 33445667777777766654 1111111 112344567777766655
No 381
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.17 E-value=40 Score=34.33 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=51.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC-CCChH---------HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 353 EKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPL---------LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 353 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~hp~---------~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
++|+.+...+|.|.-+..++.+++.-...-+. ...|. .-..+|+.|.++...|+..+|...+.+|+.++.
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 56777777788888777777777752222221 11121 135689999999999999999999999999876
Q ss_pred hc
Q 012829 423 IT 424 (455)
Q Consensus 423 ~~ 424 (455)
.-
T Consensus 367 ~n 368 (696)
T KOG2471|consen 367 RN 368 (696)
T ss_pred cC
Confidence 53
No 382
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=47.01 E-value=12 Score=23.71 Aligned_cols=23 Identities=30% Similarity=0.777 Sum_probs=17.5
Q ss_pred CccccCcCC--CcCCCCCCccccCCH
Q 012829 30 CDGCFASSN--LKKCSACQVVWYCGS 53 (455)
Q Consensus 30 C~~C~~~~~--~~~C~~C~~~~yCs~ 53 (455)
|+.|-+... +..|..|+.. ||++
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~-FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNL-FCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCc-cccc
Confidence 677877732 6889999986 8974
No 383
>PRK11827 hypothetical protein; Provisional
Probab=46.95 E-value=17 Score=25.62 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=26.1
Q ss_pred hhHhhCccCCCCCCcccccCCCCCCcccCCCCCcCC
Q 012829 261 AILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 296 (455)
Q Consensus 261 ~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~ 296 (455)
.+++-+.|| .|+|.+..+.+.....|..|+....
T Consensus 4 ~LLeILaCP--~ckg~L~~~~~~~~Lic~~~~laYP 37 (60)
T PRK11827 4 RLLEIIACP--VCNGKLWYNQEKQELICKLDNLAFP 37 (60)
T ss_pred HHHhheECC--CCCCcCeEcCCCCeEECCccCeecc
Confidence 457788997 6999988766666788999987543
No 384
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.79 E-value=2e+02 Score=25.28 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=63.3
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
..+....+.|+-++|+..+..+-+.- ..+.--.++.+. ..+..+++.|-|++-.. -.+-+-++.+|.+.
T Consensus 99 r~at~~a~kgdta~AV~aFdeia~dt--~~P~~~rd~ARl--raa~lLvD~gsy~dV~s-------rvepLa~d~n~mR~ 167 (221)
T COG4649 99 RAATLLAQKGDTAAAVAAFDEIAADT--SIPQIGRDLARL--RAAYLLVDNGSYDDVSS-------RVEPLAGDGNPMRH 167 (221)
T ss_pred HHHHHHhhcccHHHHHHHHHHHhccC--CCcchhhHHHHH--HHHHHHhccccHHHHHH-------HhhhccCCCChhHH
Confidence 33444556677777777665553311 111111233333 34455667777766543 34445678999999
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
.....||...+..|++.+|.+.+.+...
T Consensus 168 sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 168 SAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 9999999999999999999999887665
No 385
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=46.14 E-value=1.2e+02 Score=22.35 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhccc-CCccccH
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY-HPFSVNL 348 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l-~~~~~~~ 348 (455)
++..+...|...-..|++++|..+|..+++.....+ ...++..
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~ 48 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQR 48 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 445666677777788999999999999888655533 3344443
No 386
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=46.02 E-value=2.5e+02 Score=27.40 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 425 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~ 425 (455)
+-..+..++.+|..+...+++.+|+..|++|...++...
T Consensus 247 ~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~ 285 (345)
T cd09034 247 CIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKESE 285 (345)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 335678888888888888999999999999887666553
No 387
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=45.95 E-value=13 Score=22.26 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=14.5
Q ss_pred CCCcccccCCCCCCcccCCCCCc
Q 012829 272 GCSGFLLRDSDDKGFTCQQCGLV 294 (455)
Q Consensus 272 ~C~g~~~~~~~~~~~~C~~C~~~ 294 (455)
.|++.+.+..++....|+.|+..
T Consensus 8 ~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 8 RCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TT--BEEE-SSSS-EEESSSS-E
T ss_pred cCCccccCCCCcCEeECCCCcCE
Confidence 68888887777777789999874
No 388
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=44.84 E-value=13 Score=25.88 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=12.2
Q ss_pred EEEEecccCCCCeeEEe
Q 012829 204 VVRAVQHVPKGAEVLIS 220 (455)
Q Consensus 204 ~v~a~r~I~~GeEi~is 220 (455)
+++|.++|++|+.|+-.
T Consensus 3 vvVA~~di~~G~~i~~~ 19 (63)
T PF08666_consen 3 VVVAARDIPAGTVITAE 19 (63)
T ss_dssp EEEESSTB-TT-BECTT
T ss_pred EEEEeCccCCCCEEccC
Confidence 57899999999999543
No 389
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=44.61 E-value=19 Score=20.58 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=15.7
Q ss_pred cCccccCcCC--CcCCCCCCcc
Q 012829 29 RCDGCFASSN--LKKCSACQVV 48 (455)
Q Consensus 29 ~C~~C~~~~~--~~~C~~C~~~ 48 (455)
.|-.|.+..+ ...|+.|++.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCC
Confidence 5888888854 6789999875
No 390
>PF10867 DUF2664: Protein of unknown function (DUF2664); InterPro: IPR022614 The proteins in this entry belong to the Herpesviridae UL96 family. Currently no function is known.
Probab=44.11 E-value=26 Score=26.80 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=13.4
Q ss_pred HHhchhccCCCChhHHH
Q 012829 418 VEILRITHGTNSPFMKE 434 (455)
Q Consensus 418 ~~i~~~~~G~~hp~~~~ 434 (455)
-+.+...||++||++..
T Consensus 10 ~~fL~~alG~~HpLt~~ 26 (89)
T PF10867_consen 10 HQFLRRALGEQHPLTSH 26 (89)
T ss_pred HHHHHHHhCCCCccHHH
Confidence 35677889999998854
No 391
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=44.10 E-value=2.7e+02 Score=30.72 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=54.6
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
..+.++|..|+....++++. ||+ ...+.++..| +..++|+.++|.... +......| ++- ..+..
T Consensus 19 ~ld~~qfkkal~~~~kllkk-----~Pn-~~~a~vLkaL--sl~r~gk~~ea~~~L----e~~~~~~~-~D~---~tLq~ 82 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK-----HPN-ALYAKVLKAL--SLFRLGKGDEALKLL----EALYGLKG-TDD---LTLQF 82 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH-----CCC-cHHHHHHHHH--HHHHhcCchhHHHHH----hhhccCCC-Cch---HHHHH
Confidence 34556677777766666553 222 2233333333 467889999998443 33332233 332 34566
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHH
Q 012829 397 CGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
|-..|..+|++++|...|++|..
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHh
Confidence 67789999999999999999986
No 392
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=44.00 E-value=65 Score=33.13 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=36.4
Q ss_pred HHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 357 KILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
+.+...|+.++|++.+.+++..- .-.+. .-.+.++.+|-.+..+.++++|..++.+-.+.
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q-~~~~Q---l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQ-SEWKQ---LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccch-hhHHh---HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 34445567777777777666322 22222 22456777777777777777777776666653
No 393
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=43.39 E-value=99 Score=29.39 Aligned_cols=58 Identities=22% Similarity=0.173 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH-HHHHHHHHHHHHHhh
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK-ELILKLEEAQAEASY 448 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~-~~~~~l~~~~~~~~~ 448 (455)
+......-|.++...|..++|.+|++.....+. ..+..+++.. .+...|++....++.
T Consensus 197 l~~~Kl~yA~~Lae~G~~~~A~kY~d~i~~~lk-~~~~~~~~~~~~l~~~l~~l~~~~~~ 255 (284)
T PF12931_consen 197 LQPYKLQYASLLAEQGLLSEALKYCDAIASSLK-SLPKNSPYHHQNLAQQLQELSSRLSE 255 (284)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-TS-TTSHHHH-HHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-hCCccChhhHHHHHHHHHHHHHHhcc
Confidence 333444568889999999999999888887776 5577778777 788888887776653
No 394
>PF04071 zf-like: Cysteine-rich small domain; InterPro: IPR007212 This is a probable metal-binding domain. It is found in a probable precorrin-3B C17-methyltransferase from Methanobacterium thermoautotrophicum, that catalyses the methylation of C-17 in precorrin-3B to form precorrin-4.
Probab=42.99 E-value=90 Score=23.77 Aligned_cols=42 Identities=19% Similarity=0.450 Sum_probs=28.6
Q ss_pred CCCccc-ccCCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHH
Q 012829 272 GCSGFL-LRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKK 313 (455)
Q Consensus 272 ~C~g~~-~~~~~~~~~~C~~C~~~~~~~~~~~~~~e~~~l~~~ 313 (455)
.|.|.. ....+...|.|..|...-..+.+..++..+.+..++
T Consensus 37 ~~~G~~~~~~~G~~vw~C~~C~~~H~~e~~~~i~~~~~~~~~~ 79 (86)
T PF04071_consen 37 ECGGNFIYTKNGSKVWDCSDCTLPHRPENYDYIIRKLKEIIEE 79 (86)
T ss_pred CCCccEEEcCCCCeeeECccCCCccCHHHHHHHHHHHHHHHHH
Confidence 454443 334455789999999998888777777666655443
No 395
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=42.71 E-value=2.9e+02 Score=32.39 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHH
Q 012829 321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 400 (455)
Q Consensus 321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l 400 (455)
+++++|.++++..++...+ ....+...+..++.+.+-+.|-.+..+++....+ ..|..+ ..+.|++
T Consensus 1544 ek~~~A~ell~~m~KKF~q--------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk---~eHv~~---IskfAqL 1609 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQ--------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK---QEHVEF---ISKFAQL 1609 (1710)
T ss_pred hcchhHHHHHHHHHHHhcc--------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch---hhhHHH---HHHHHHH
Confidence 4556666666655554321 1233344566667777777888888888875543 566655 5677888
Q ss_pred hhhcCCcHHHHHHHHHHHH
Q 012829 401 EWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 401 ~~~~g~~~eA~~~l~~A~~ 419 (455)
.+..|+.+.+..+++--+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred HhhcCCchhhHHHHHHHHh
Confidence 8889998888887776553
No 396
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.65 E-value=90 Score=27.41 Aligned_cols=73 Identities=14% Similarity=0.013 Sum_probs=50.9
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 393 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 393 (455)
+.-+...|.|++.. ...+.+-++.++....++..|+-+-.+.|++..|...+.++.+ ..--|.+-..++..
T Consensus 139 a~lLvD~gsy~dV~-------srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~--Da~aprnirqRAq~ 209 (221)
T COG4649 139 AYLLVDNGSYDDVS-------SRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN--DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHhccccHHHHH-------HHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc--cccCcHHHHHHHHH
Confidence 44456666666533 3345667888999999999999999999999999999888665 33334444445444
Q ss_pred HH
Q 012829 394 YY 395 (455)
Q Consensus 394 l~ 395 (455)
+.
T Consensus 210 ml 211 (221)
T COG4649 210 ML 211 (221)
T ss_pred HH
Confidence 44
No 397
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=41.75 E-value=17 Score=27.51 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=22.1
Q ss_pred HhhCccCCCCCCcccccCCCCCCcccCCCCCcCC
Q 012829 263 LEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 296 (455)
Q Consensus 263 ~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~ 296 (455)
-..+.|| .|+...+.......|.|.+||....
T Consensus 33 ~~~~~Cp--~C~~~~VkR~a~GIW~C~kCg~~fA 64 (89)
T COG1997 33 RAKHVCP--FCGRTTVKRIATGIWKCRKCGAKFA 64 (89)
T ss_pred hcCCcCC--CCCCcceeeeccCeEEcCCCCCeec
Confidence 3356786 5765555555667899999998654
No 398
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=40.84 E-value=1.5e+02 Score=21.97 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL 340 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~ 340 (455)
+..+...|...-..|++++|+..|..++......
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3455666777777899999999999988865553
No 399
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.78 E-value=1e+02 Score=30.24 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccH
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDW 365 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~ 365 (455)
.+..+...+...+.+++++.|...+..+..+...++|..|-....+..--+.+++..+++
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~ 99 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKE 99 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666788999999999999999999999999988888877767666665544
No 400
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=40.60 E-value=20 Score=23.97 Aligned_cols=24 Identities=25% Similarity=0.830 Sum_probs=16.1
Q ss_pred CCCcccccCCCC--CCcccCCCCCcC
Q 012829 272 GCSGFLLRDSDD--KGFTCQQCGLVR 295 (455)
Q Consensus 272 ~C~g~~~~~~~~--~~~~C~~C~~~~ 295 (455)
.|+..+.+..+. ..+.|..||...
T Consensus 5 ~Cg~~l~~~~~~~~~~~vC~~Cg~~~ 30 (52)
T smart00661 5 KCGNMLIPKEGKEKRRFVCRKCGYEE 30 (52)
T ss_pred CCCCccccccCCCCCEEECCcCCCeE
Confidence 577766655432 368899999754
No 401
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=40.01 E-value=2.4e+02 Score=24.07 Aligned_cols=58 Identities=9% Similarity=0.056 Sum_probs=35.6
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
+..+.....++.+++..++..+ .++.|..+.+ ..--+.+++..|+|.+|+.+.+.+.+
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdAL-----rvLrP~~~e~---d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDAL-----RVLRPNLKEL---DMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH-----HHhCCCcccc---chhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3333334466777777665443 3455555432 22345577888999999998776544
No 402
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.98 E-value=1.6e+02 Score=29.40 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=59.7
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhH---HhhcCCCChHH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY---QRVYPQFHPLL 390 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~---~~~~g~~hp~~ 390 (455)
+..+...|+++.|+..|.++..-.+. -..++++.-+++.+-+..|+|..-+.+-.++..-- +..-...++.
T Consensus 157 ~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k- 230 (466)
T KOG0686|consen 157 GDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK- 230 (466)
T ss_pred HHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc-
Confidence 44566789999999999887665543 35577888899999999999988887766654431 1111111111
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~ 416 (455)
....- |.....+++|+.|.+++-.
T Consensus 231 l~C~a--gLa~L~lkkyk~aa~~fL~ 254 (466)
T KOG0686|consen 231 LKCAA--GLANLLLKKYKSAAKYFLL 254 (466)
T ss_pred hHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 11222 3334455677777666544
No 403
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.94 E-value=4.7e+02 Score=27.54 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc----------------cccHHHHHHHHHHHHHhcccHHHHHHH
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF----------------SVNLMQTREKLIKILMELEDWKEALAY 371 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~----------------~~~~~~~~~~L~~~~~~~g~~~~A~~~ 371 (455)
.++...|....-+|+++-+..+.++++-...+.+||. |....-+...-++....-|-|.-|+++
T Consensus 285 dsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~ 364 (665)
T KOG2422|consen 285 DSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEW 364 (665)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 3444455666678888888888888887766777664 222333333344444556889999999
Q ss_pred HHHhhh
Q 012829 372 CQLTIP 377 (455)
Q Consensus 372 ~~~~l~ 377 (455)
|+-++.
T Consensus 365 cKllls 370 (665)
T KOG2422|consen 365 CKLLLS 370 (665)
T ss_pred HHHHhh
Confidence 887655
No 404
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=38.91 E-value=1.8e+02 Score=28.59 Aligned_cols=38 Identities=13% Similarity=-0.053 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 425 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~ 425 (455)
-..+..++.+|......+++.+|+..|+.|.+.++...
T Consensus 250 ~~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 250 LHEARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 34577778888888889999999999999998765553
No 405
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.85 E-value=75 Score=31.65 Aligned_cols=60 Identities=23% Similarity=0.239 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh--ccC------CCChhHH---HHHHHHHHHHHHHhhhh
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THG------TNSPFMK---ELILKLEEAQAEASYKL 450 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~--~~G------~~hp~~~---~~~~~l~~~~~~~~~~~ 450 (455)
++...++|.-+-++++.++|+.+|++++..+.. .-| ...|.+. .++++|++...+++++.
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~Rl 92 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHRL 92 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888999999999999999987766 112 1234444 47778888877777654
No 406
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.14 E-value=24 Score=35.09 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=45.7
Q ss_pred eeecccccccCCCCCCCcEEE---EeCC---EEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHh
Q 012829 177 TGLYPVISIINHSCLPNAVLV---FEGR---LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALK 236 (455)
Q Consensus 177 ~~lyp~~s~~NHSC~PN~~~~---~~~~---~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~ 236 (455)
.-+.-++|.+.||=.||..+. |-.. --++-.++++..||||+..+.......+.|...|.
T Consensus 199 YvMDefGsrvrHsdePnf~~aPf~fmPq~vaYsimwp~k~~~tgeE~trDfasg~~~p~~Rk~~l~ 264 (631)
T KOG2155|consen 199 YVMDEFGSRVRHSDEPNFRIAPFMFMPQNVAYSIMWPTKPVNTGEEITRDFASGVIHPEWRKYILQ 264 (631)
T ss_pred EEHhhhhhhhccCCCCcceeeeheecchhcceeEEeeccCCCCchHHHHHHhhcCCCHHHHHHHhc
Confidence 334467899999999999874 3333 23566799999999999988766666778877776
No 407
>PRK11519 tyrosine kinase; Provisional
Probab=37.88 E-value=2e+02 Score=31.51 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=21.8
Q ss_pred HHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829 418 VEILRITHGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 418 ~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
..-+...||++||.+..+...+..+..+++
T Consensus 327 ~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~ 356 (719)
T PRK11519 327 EAEISKLYTKEHPAYRTLLEKRKALEDEKA 356 (719)
T ss_pred HHHHHHHhcccCcHHHHHHHHHHHHHHHHH
Confidence 344556799999999988877766655544
No 408
>PF14762 HPS3_Mid: Hermansky-Pudlak syndrome 3, middle region
Probab=37.79 E-value=3.7e+02 Score=26.70 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=37.4
Q ss_pred HHHHHHHHHh--cccHHHHHHHHHHh----hhhHHhh---cC--CCCh-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 352 REKLIKILME--LEDWKEALAYCQLT----IPVYQRV---YP--QFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 352 ~~~L~~~~~~--~g~~~~A~~~~~~~----l~~~~~~---~g--~~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
...|+..|.+ .++|..|+.|++.+ -++..++ .+ +.+. ..|+.+| |-..+.....-+..++...+.++
T Consensus 286 ca~LGD~~~r~~~~d~~lA~pYYkMS~l~i~~Vl~ri~~~~~~~~~~~~~~GLi~y-Lk~~L~~~~~~~lseela~~il~ 364 (374)
T PF14762_consen 286 CALLGDCYSRSDEKDYHLAAPYYKMSGLSISEVLNRIKLVKSDVSQSYDGRGLIFY-LKHVLYEEESEELSEELANKILQ 364 (374)
T ss_pred HHHHHhHhhccchHHHHHHHHHHHhcCCCHHHHHHHhhhcccccccccccchHHHH-HHHHhccccchhhhHHHHHHHHH
Confidence 3456666665 67899999998864 3344442 11 1222 3454444 11222444444455555566666
Q ss_pred hchh
Q 012829 420 ILRI 423 (455)
Q Consensus 420 i~~~ 423 (455)
|+..
T Consensus 365 i~~~ 368 (374)
T PF14762_consen 365 IFSQ 368 (374)
T ss_pred HHHh
Confidence 6554
No 409
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=37.41 E-value=76 Score=35.93 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=43.0
Q ss_pred cccHHHHHHHHHHhhhhHHhhcC--CCChHHHHHHHHHHHHhhhcCCcHHHHHHHH------HHHHhchhccCCCChhH
Q 012829 362 LEDWKEALAYCQLTIPVYQRVYP--QFHPLLGLQYYTCGKLEWFLGDTENAIKSMT------EAVEILRITHGTNSPFM 432 (455)
Q Consensus 362 ~g~~~~A~~~~~~~l~~~~~~~g--~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~------~A~~i~~~~~G~~hp~~ 432 (455)
-|-|.+|+.+++--.+-++.+|- .+|-.--..+..-|.+|...|+.++|.+.++ +|+.+.....-....+.
T Consensus 921 h~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~ 999 (1265)
T KOG1920|consen 921 HGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELV 999 (1265)
T ss_pred cccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHH
Confidence 45667777766655555555553 3344333444556777888899999998765 46666665433333333
No 410
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=37.28 E-value=25 Score=28.76 Aligned_cols=23 Identities=4% Similarity=-0.132 Sum_probs=19.0
Q ss_pred CCccCccccCc---C--CCcCCCCCCcc
Q 012829 26 SISRCDGCFAS---S--NLKKCSACQVV 48 (455)
Q Consensus 26 ~~~~C~~C~~~---~--~~~~C~~C~~~ 48 (455)
...+|..|.++ + .++.||.|+..
T Consensus 8 tKr~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 8 TKRICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred ccccCCCcCccccccCCCCccCCCcCCc
Confidence 47899999998 3 48999999876
No 411
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=36.55 E-value=15 Score=23.69 Aligned_cols=28 Identities=29% Similarity=0.803 Sum_probs=14.6
Q ss_pred ccCCCCCCcc-cccCCCCCCcccCCCCCcCC
Q 012829 267 RCKDDGCSGF-LLRDSDDKGFTCQQCGLVRS 296 (455)
Q Consensus 267 ~C~~~~C~g~-~~~~~~~~~~~C~~C~~~~~ 296 (455)
.|| .|++. +..+.....+.|..||...+
T Consensus 2 ~Cp--~Cg~~~~~~D~~~g~~vC~~CG~Vl~ 30 (43)
T PF08271_consen 2 KCP--NCGSKEIVFDPERGELVCPNCGLVLE 30 (43)
T ss_dssp SBT--TTSSSEEEEETTTTEEEETTT-BBEE
T ss_pred CCc--CCcCCceEEcCCCCeEECCCCCCEee
Confidence 465 35432 33344445567888877654
No 412
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=36.46 E-value=1.9e+02 Score=30.80 Aligned_cols=99 Identities=14% Similarity=0.053 Sum_probs=57.4
Q ss_pred hhcCChHHHHHHHHHHHHH--hhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829 318 TSCGNHQEVVSTYKMIEKL--QKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 395 (455)
Q Consensus 318 ~~~g~~~~a~~~~~~~l~~--~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 395 (455)
...+++++|.+.+..++.- .....++++..+-.-.-+|. ....+.-..+.+ =.+.+--.+.+.-++|....
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdli---s~~p~~~~slnv----daiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLI---SQNPDKVQSLNV----DAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHH---HhCcchhcccCH----HHHHHhhcccCcHHHHHHHH
Confidence 4566778887777766552 22334555544332222221 111111111111 11223334456678899999
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 396 TCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 396 ~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
.||.-|...|.+++|...|++|+.-...
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v~t 280 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTVMT 280 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhee
Confidence 9999999999999999999999864433
No 413
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=36.09 E-value=3.6e+02 Score=25.41 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh----HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP----LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp----~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
.+...++-.+++..++|+.|+....+.+. +.|..| .+| -+|.++|-+.-|.+-+...++
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~-----l~P~dp~eirDrG-------liY~ql~c~~vAl~dl~~~~~----- 243 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLD-----LNPEDPYEIRDRG-------LIYAQLGCYHVALEDLSYFVE----- 243 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHh-----hCCCChhhccCcH-------HHHHhcCCchhhHHHHHHHHH-----
Confidence 35566777889999999999999888776 333333 344 467777888888877776554
Q ss_pred cCCCChhHHHHHHHHHHHH
Q 012829 425 HGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 425 ~G~~hp~~~~~~~~l~~~~ 443 (455)
+=|+.|..--+...+.+++
T Consensus 244 ~~P~~~~a~~ir~~l~~l~ 262 (269)
T COG2912 244 HCPDDPIAEMIRAQLLELR 262 (269)
T ss_pred hCCCchHHHHHHHHHHHHH
Confidence 3477776666666666665
No 414
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=35.99 E-value=74 Score=27.94 Aligned_cols=35 Identities=31% Similarity=0.720 Sum_probs=19.3
Q ss_pred cCCeeeeccccCCCCCCCchhhhhhHhhCccCCCCCCcccccC
Q 012829 238 QYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRD 280 (455)
Q Consensus 238 ~y~F~C~C~rC~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~ 280 (455)
.-+|.| ++|... + +..+++-.+|.|| .|++.+...
T Consensus 115 ~~~Y~C--p~C~~r--y--tf~eA~~~~F~Cp--~Cg~~L~~~ 149 (178)
T PRK06266 115 NMFFFC--PNCHIR--F--TFDEAMEYGFRCP--QCGEMLEEY 149 (178)
T ss_pred CCEEEC--CCCCcE--E--eHHHHhhcCCcCC--CCCCCCeec
Confidence 344444 777653 1 2344555577775 577766543
No 415
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=35.02 E-value=3.7e+02 Score=26.45 Aligned_cols=37 Identities=8% Similarity=0.057 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
+-..+..++..|......+++.+++..|+.|.+.+..
T Consensus 233 ~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~ 269 (355)
T cd09241 233 HHFKAAAHYRMALVALEKSKYGEEVARLRVALAACKE 269 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3345677777787777788898999999988876543
No 416
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.96 E-value=3.3e+02 Score=28.32 Aligned_cols=127 Identities=13% Similarity=0.038 Sum_probs=64.8
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
..|......|+.+.|+...+......-+- .-.-....++..+..+.+|.+|..++..+.+..+.-..-+--..|
T Consensus 272 ~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ------~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~ 345 (546)
T KOG3783|consen 272 MEARILSIKGNSEAAIDMESLSIPIRMKQ------VKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAG 345 (546)
T ss_pred HHHHHHHHcccHHHHHHHHHhcccHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHH
Confidence 34445555566555555554443311110 011233467777888899999999988877765422221111222
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 444 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~ 444 (455)
-.++.=...-.+.|..++-...+.+....+-+.-|++-|.=+-+.++.+.-..
T Consensus 346 cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~ 398 (546)
T KOG3783|consen 346 CCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVK 398 (546)
T ss_pred HHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhc
Confidence 22211112222223334434445555555555557777776666666665543
No 417
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=34.84 E-value=31 Score=24.01 Aligned_cols=28 Identities=25% Similarity=0.646 Sum_probs=17.7
Q ss_pred CccCCCCCCcccccCC--CCCCcccCCCCC
Q 012829 266 YRCKDDGCSGFLLRDS--DDKGFTCQQCGL 293 (455)
Q Consensus 266 ~~C~~~~C~g~~~~~~--~~~~~~C~~C~~ 293 (455)
..||.++|+..+.... +.....|..|+.
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~ 48 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGF 48 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCC
Confidence 4588888876665542 445566776764
No 418
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.82 E-value=58 Score=29.88 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=41.6
Q ss_pred HHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 359 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 359 ~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
....+|.+-|.+++.+++... |.-+.-++.+|......|+++.|.+.|++.+++
T Consensus 5 ~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 445688888888888887743 555667788888888899999998888876644
No 419
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.67 E-value=1.4e+02 Score=28.51 Aligned_cols=57 Identities=12% Similarity=-0.037 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh---------------HHhhcCCCChHHHHHHHHHHHHh
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------------YQRVYPQFHPLLGLQYYTCGKLE 401 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~---------------~~~~~g~~hp~~~~~l~~La~l~ 401 (455)
+|.-.+.+..|+..|...|+.++|++++-..+.. .=..+|+.||.+....-+|+.++
T Consensus 232 dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL~slL 303 (304)
T COG3118 232 DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKLYSLL 303 (304)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 4555667888999999999999999876543322 11256677776666666665553
No 420
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=34.57 E-value=18 Score=25.73 Aligned_cols=31 Identities=26% Similarity=0.623 Sum_probs=20.7
Q ss_pred CccCccccCcCC------CcCCCCCCccccCCHHHhHh
Q 012829 27 ISRCDGCFASSN------LKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 27 ~~~C~~C~~~~~------~~~C~~C~~~~yCs~~C~~~ 58 (455)
...|++|..... .++ ..=...+|||..|.+.
T Consensus 3 ~~~CsFcG~~I~PGtG~m~Vr-~Dg~v~~FcssKc~k~ 39 (66)
T COG2075 3 VRVCSFCGKKIEPGTGIMYVR-NDGKVLRFCSSKCEKL 39 (66)
T ss_pred eeEecCcCCccCCCceEEEEe-cCCeEEEEechhHHHH
Confidence 357999999842 122 2224568999999873
No 421
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=34.34 E-value=16 Score=22.53 Aligned_cols=27 Identities=26% Similarity=0.792 Sum_probs=16.8
Q ss_pred cCCCCCCcccccCCCCCC-cccCCCCCcCC
Q 012829 268 CKDDGCSGFLLRDSDDKG-FTCQQCGLVRS 296 (455)
Q Consensus 268 C~~~~C~g~~~~~~~~~~-~~C~~C~~~~~ 296 (455)
|+ .|++.|.|..+... ..|..|+....
T Consensus 4 Cp--~C~nlL~p~~~~~~~~~C~~C~Y~~~ 31 (35)
T PF02150_consen 4 CP--ECGNLLYPKEDKEKRVACRTCGYEEP 31 (35)
T ss_dssp ET--TTTSBEEEEEETTTTEEESSSS-EEE
T ss_pred CC--CCCccceEcCCCccCcCCCCCCCccC
Confidence 64 68888877544322 25999997643
No 422
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=34.18 E-value=50 Score=30.03 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHhhhhHHhhcCCCChHHHH-HHHHHHHH--hhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829 364 DWKEALAYCQLTIPVYQRVYPQFHPLLGL-QYYTCGKL--EWFLGDTENAIKSMTEAVEILRITHGTN 428 (455)
Q Consensus 364 ~~~~A~~~~~~~l~~~~~~~g~~hp~~~~-~l~~La~l--~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 428 (455)
-|+.-..|+++..+..+..+|..|+...+ .-.+.... +...|+.+++.+.|..+...++.. |++
T Consensus 11 gpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~-GAd 77 (230)
T COG1794 11 GPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERA-GAD 77 (230)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhc-CCC
Confidence 46778899999999999999988875533 33344444 667899999999999999888876 655
No 423
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=34.06 E-value=1.6e+02 Score=29.06 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=30.5
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
+.+-..+..++..|..+...+++.+|+..|+.|.+.++.
T Consensus 242 K~~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~ 280 (353)
T cd09243 242 KSVFYLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNK 280 (353)
T ss_pred HHHHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHH
Confidence 444456778888888888889999999999988876644
No 424
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=33.84 E-value=2e+02 Score=21.31 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhc
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 339 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~ 339 (455)
++..+..+|...-..|++++|+.+|..+++....
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 4455566666666778999999999999886543
No 425
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=33.61 E-value=42 Score=32.66 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=66.9
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhc---c--------cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKK---L--------YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 381 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~---~--------l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~ 381 (455)
.....+..+++..|..-|.+.+..... . ..+....-...+.+++..-+.++++..|...+..++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~---- 303 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR---- 303 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc----
Confidence 344455667888888777776654321 0 1112222333455677777778888888776655554
Q ss_pred hcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 382 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 382 ~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
..+...-.+|..++.+..+.++++|+..+..|..
T Consensus 304 ----~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 304 ----DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ 337 (372)
T ss_pred ----cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc
Confidence 5566777889999999999999999999888865
No 426
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=33.59 E-value=1.4e+02 Score=26.11 Aligned_cols=43 Identities=21% Similarity=0.418 Sum_probs=28.3
Q ss_pred HHHHHHHhccCCeeeeccccCCCCCCCchhhhhhHhhCccCCCCCCccccc
Q 012829 229 MTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLR 279 (455)
Q Consensus 229 ~~R~~~L~~~y~F~C~C~rC~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~ 279 (455)
..+.+...++-+|.| +.|...- +...++..+|.|| .|++.+..
T Consensus 102 k~~le~~~~~~~y~C--~~~~~r~----sfdeA~~~~F~Cp--~Cg~~L~~ 144 (176)
T COG1675 102 KRKLEKETENNYYVC--PNCHVKY----SFDEAMELGFTCP--KCGEDLEE 144 (176)
T ss_pred HHHHHhhccCCceeC--CCCCCcc----cHHHHHHhCCCCC--CCCchhhh
Confidence 345556677888888 7777642 2445677788886 57776643
No 427
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=33.54 E-value=2.7e+02 Score=27.43 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=30.6
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
..+-..+..++..|......+++.+|+..|+.|.+.+...
T Consensus 241 K~~~f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~a 280 (353)
T cd09246 241 KAAYFRAEALYRAAKDLHEKEDIGEEIARLRAASDALAEA 280 (353)
T ss_pred HHHHHHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHHHH
Confidence 3444567778888888888899999999999887754444
No 428
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=33.52 E-value=78 Score=27.16 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=20.0
Q ss_pred cCCeeeeccccCCCCCCCchhhhhhHhhCccCCCCCCcccccC
Q 012829 238 QYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRD 280 (455)
Q Consensus 238 ~y~F~C~C~rC~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~ 280 (455)
.-+|.| ++|...- +..+++-.+|.|| .|++.+...
T Consensus 107 ~~~Y~C--p~c~~r~----tf~eA~~~~F~Cp--~Cg~~L~~~ 141 (158)
T TIGR00373 107 NMFFIC--PNMCVRF----TFNEAMELNFTCP--RCGAMLDYL 141 (158)
T ss_pred CCeEEC--CCCCcEe----eHHHHHHcCCcCC--CCCCEeeec
Confidence 345555 7776531 2345555577776 577766543
No 429
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=33.36 E-value=1.1e+02 Score=29.27 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=38.7
Q ss_pred HHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 358 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
-....|+.++|..+...++. +-|.||.+ +..+|.....-.+.-+|-.+|.+|+.
T Consensus 125 ~~~~~Gk~ekA~~lfeHAla-----laP~~p~~---L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALA-----LAPTNPQI---LIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHHhccchHHHHHHHHHHHh-----cCCCCHHH---HHHHhHHHHhhhhhHhhhhhhheeee
Confidence 34457889999998888776 55789987 44556666555666777777777764
No 430
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.35 E-value=4.1e+02 Score=24.84 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=33.0
Q ss_pred HHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcH-HHHHHHHHHHHhc
Q 012829 358 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTE-NAIKSMTEAVEIL 421 (455)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~-eA~~~l~~A~~i~ 421 (455)
.+.+.|++..|.+++.-.++.|++.--+.. .....+|+.+....+.-+ +-.+.+.+|+..-
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS 80 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWS 80 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 455567777777777777777776322222 223456666665554333 4556666666665
No 431
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=33.27 E-value=23 Score=24.68 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=23.7
Q ss_pred CccCccccCcC-C-----CcCCCCCC-ccccCCHHHhHhhh
Q 012829 27 ISRCDGCFASS-N-----LKKCSACQ-VVWYCGSNCQKLDW 60 (455)
Q Consensus 27 ~~~C~~C~~~~-~-----~~~C~~C~-~~~yCs~~C~~~~~ 60 (455)
...|..|...+ + .++||+|+ ..-|=.+.|++...
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g~ 49 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLGN 49 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCCCCceeeehhhhHHHcCC
Confidence 46899998875 2 57899998 33344467887653
No 432
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.19 E-value=2.5e+02 Score=22.92 Aligned_cols=86 Identities=9% Similarity=0.033 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHHHhhcc-cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829 321 GNHQEVVSTYKMIEKLQKKL-YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 399 (455)
Q Consensus 321 g~~~~a~~~~~~~l~~~~~~-l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 399 (455)
|.......+++++....... --.+++.+++..- .|++.-+ ++.+.+.. .+.+-.|..+ +.-+...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi----~ya~~~~--~~~~if~~---l~~~~IG~~~---A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWI----KYADLSS--DPREIFKF---LYSKGIGTKL---ALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHH----HHHTTBS--HHHHHHHH---HHHHTTSTTB---HHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHH----HHHHHcc--CHHHHHHH---HHHcCccHHH---HHHHHHHHH
Confidence 45556666777776653221 1112333333322 2222222 44444443 3335566555 455888899
Q ss_pred HhhhcCCcHHHHHHHHHHH
Q 012829 400 LEWFLGDTENAIKSMTEAV 418 (455)
Q Consensus 400 l~~~~g~~~eA~~~l~~A~ 418 (455)
.+...|++++|.+.+++++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998874
No 433
>PF01599 Ribosomal_S27: Ribosomal protein S27a; InterPro: IPR002906 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesized as a C-terminal extension of ubiquitin (CEP) (IPR000626 from INTERPRO). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis []. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2K4X_A 3U5C_f 3U5G_f 2XZN_9 2XZM_9.
Probab=33.11 E-value=22 Score=23.62 Aligned_cols=28 Identities=21% Similarity=0.731 Sum_probs=16.6
Q ss_pred CccCCCCCC-cccccCCCCCCcccCCCCCc
Q 012829 266 YRCKDDGCS-GFLLRDSDDKGFTCQQCGLV 294 (455)
Q Consensus 266 ~~C~~~~C~-g~~~~~~~~~~~~C~~C~~~ 294 (455)
-.||++.|+ |.++.... .-+.|.+|+.+
T Consensus 19 k~CP~~~CG~GvFMA~H~-dR~~CGKCg~T 47 (47)
T PF01599_consen 19 KECPSPRCGAGVFMAEHK-DRHYCGKCGYT 47 (47)
T ss_dssp EE-TSTTTTSSSEEEE-S-SEEEETTTSS-
T ss_pred hcCCCcccCCceEeeecC-CCccCCCcccC
Confidence 468888896 44444332 35889999863
No 434
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.95 E-value=3.5e+02 Score=24.85 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=15.5
Q ss_pred ccccHHHHHHHHHHHHHhcccHHH
Q 012829 344 FSVNLMQTREKLIKILMELEDWKE 367 (455)
Q Consensus 344 ~~~~~~~~~~~L~~~~~~~g~~~~ 367 (455)
.|+.+..++..|+.+....+++..
T Consensus 70 ~~~~L~~a~~kLg~v~~~v~dl~~ 93 (230)
T cd07625 70 THHGLGNLYEKFGKVLTAVGDIDS 93 (230)
T ss_pred ccchHHHHHHHHHHHHHHHhhHHH
Confidence 456666777777776666666544
No 435
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=31.97 E-value=36 Score=20.57 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=13.6
Q ss_pred cCccccCcC-----CCcCCCCCCc
Q 012829 29 RCDGCFASS-----NLKKCSACQV 47 (455)
Q Consensus 29 ~C~~C~~~~-----~~~~C~~C~~ 47 (455)
.|..|.+.. ..++|+.|+.
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECGH 25 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS-
T ss_pred CCCcCCCeeEcCCCCcEECCcCCC
Confidence 477888772 3789999974
No 436
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.87 E-value=6.1e+02 Score=26.40 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=26.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829 353 EKLIKILMELEDWKEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 353 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 384 (455)
..++..|..+++|.+|+.+|.++..-...+.+
T Consensus 426 ~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~ 457 (593)
T KOG2460|consen 426 FYIAVSYQAKKKYSEALALYVRAYSYLQEVNS 457 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788888999999999999998876666655
No 437
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=31.85 E-value=2e+02 Score=20.82 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhccc
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 341 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l 341 (455)
.+..+...|...-..|++++|+..|..+++.....+
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 334455566666677999999999998887655433
No 438
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=31.77 E-value=26 Score=29.15 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=14.8
Q ss_pred CCCCCCCeEEEeCCceeecCC
Q 012829 3 SFHVSGEVIISQEPYVCVPNN 23 (455)
Q Consensus 3 ~~i~~Ge~il~e~P~~~~~~~ 23 (455)
++|++||+|+.+.|++..+..
T Consensus 8 ~dI~~Ge~I~~p~~~~~~~~~ 28 (162)
T PF00856_consen 8 RDIKAGEVILIPRPAILTPDE 28 (162)
T ss_dssp S-B-TTEEEEEESEEEEEHHH
T ss_pred ccCCCCCEEEEECcceEEehh
Confidence 689999999977777766653
No 439
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=31.75 E-value=79 Score=18.58 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhc----CCcHHHHHHHHHHHH
Q 012829 393 QYYTCGKLEWFL----GDTENAIKSMTEAVE 419 (455)
Q Consensus 393 ~l~~La~l~~~~----g~~~eA~~~l~~A~~ 419 (455)
.++.||..+..- .+.++|..++++|.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 467788776542 267889999998865
No 440
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.74 E-value=3.9e+02 Score=25.33 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=47.3
Q ss_pred HHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH-HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829 357 KILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 428 (455)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 428 (455)
+.|-.+.+-+.-..++++++.+-.. -.||.+ |....-=|+.+..-|++++|..-+.+|...+...-.|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSA---IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspR 268 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSA---IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR 268 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhcc---CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcc
Confidence 4455555545545556666654432 357864 66666668889999999999999999998877664443
No 441
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=31.01 E-value=1.3e+02 Score=21.39 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHh
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 337 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~ 337 (455)
+..+...|...-..|++++|+..|..++...
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3445566777778899999999998887754
No 442
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=30.85 E-value=24 Score=25.91 Aligned_cols=22 Identities=27% Similarity=0.742 Sum_probs=10.3
Q ss_pred CCccCccccCcC---CCcCCCCCCc
Q 012829 26 SISRCDGCFASS---NLKKCSACQV 47 (455)
Q Consensus 26 ~~~~C~~C~~~~---~~~~C~~C~~ 47 (455)
....|+.||+.. ...-||.|+.
T Consensus 8 ~vlrC~aCf~~t~~~~k~FCp~CGn 32 (73)
T PF08772_consen 8 WVLRCHACFKITKDMTKQFCPKCGN 32 (73)
T ss_dssp EEEE-SSS--EES-SS--S-SSS--
T ss_pred eeEEccccccCcCCCCceeCcccCC
Confidence 356899999983 3678888874
No 443
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=30.53 E-value=43 Score=23.96 Aligned_cols=25 Identities=16% Similarity=0.462 Sum_probs=18.6
Q ss_pred CCCCccCccccCcCC------CcCCCCCCcc
Q 012829 24 SSSISRCDGCFASSN------LKKCSACQVV 48 (455)
Q Consensus 24 ~~~~~~C~~C~~~~~------~~~C~~C~~~ 48 (455)
....+.|+.|..... ...|+.|+..
T Consensus 25 ~~TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~ 55 (69)
T PF07282_consen 25 AYTSQTCPRCGHRNKKRRSGRVFTCPNCGFE 55 (69)
T ss_pred CCCccCccCcccccccccccceEEcCCCCCE
Confidence 446889999998732 5678888864
No 444
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.12 E-value=3.1e+02 Score=28.16 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=28.0
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHH----hcccHHHHHHHHHHhhh
Q 012829 319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM----ELEDWKEALAYCQLTIP 377 (455)
Q Consensus 319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~----~~g~~~~A~~~~~~~l~ 377 (455)
..|+.+.|..+|+.++. .+.+++-..|-.+|+ ..|.++.|..+++++|+
T Consensus 483 ~LgdtdRaRaifelAi~----------qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 483 SLGDTDRARAIFELAIS----------QPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HhhhHHHHHHHHHHHhc----------CcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 34666677766665532 112333334555564 35777777777777665
No 445
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=30.08 E-value=3.3e+02 Score=22.92 Aligned_cols=74 Identities=14% Similarity=0.049 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhcCChH---HHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829 307 VNILSKKTLALTSCGNHQ---EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 383 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~---~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 383 (455)
.++.++-|+.+..+.+-+ +-+.+++.++. .-||. .--+..+-|+..+.+.++|++++.|.+..++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~--~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~----- 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPE--RRRECLYYLAVGHYRLKEYSKSLRYVDALLET----- 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcc--cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh-----
Confidence 445666777766554433 33444444432 11222 22345566888888999999999998887762
Q ss_pred CCCChHHH
Q 012829 384 PQFHPLLG 391 (455)
Q Consensus 384 g~~hp~~~ 391 (455)
-|++++..
T Consensus 101 e~~n~Qa~ 108 (149)
T KOG3364|consen 101 EPNNRQAL 108 (149)
T ss_pred CCCcHHHH
Confidence 35666653
No 446
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=30.03 E-value=6e+02 Score=25.93 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHh--hcC-CCChHHHHHHHHHHHH-------------hhhcCCcHHHHHHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQR--VYP-QFHPLLGLQYYTCGKL-------------EWFLGDTENAIKSM 414 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~--~~g-~~hp~~~~~l~~La~l-------------~~~~g~~~eA~~~l 414 (455)
....|+...+.+|+++-|.+.++++-+.-.- +|- ..+... +.+|+.+ ++.+|+.++.++.|
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~---L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREK---LSKLAKIAEERGDINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHH---HHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHH---HHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHH
Confidence 5678999999999999999888876442221 111 122222 2233333 23457777777777
Q ss_pred HHH-----HHhchhccCC
Q 012829 415 TEA-----VEILRITHGT 427 (455)
Q Consensus 415 ~~A-----~~i~~~~~G~ 427 (455)
.++ ..++.++|||
T Consensus 426 ~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 426 IETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHTT-HHHHHHHHHHTT-
T ss_pred HHcCCchHHHHHHHhcCC
Confidence 775 4556666665
No 447
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.41 E-value=1e+02 Score=30.97 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=44.3
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 381 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~ 381 (455)
...--|||..|++..+-+.--...++..--.-.+.+.+.++-+|+.+++|.+|.+....++.-..+
T Consensus 131 vh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 131 VHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334568999998876544221222333223334456889999999999999999998887664443
No 448
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=29.34 E-value=1.3e+02 Score=29.25 Aligned_cols=71 Identities=17% Similarity=0.094 Sum_probs=49.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829 353 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 425 (455)
Q Consensus 353 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~ 425 (455)
-.|+..|.+.++|.+|+.+...++.-++++........... .=.++|+++....+|...|.-|....-..|
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~l--lESK~y~~l~Nl~KakasLTsART~AnaiY 202 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHL--LESKAYHALRNLPKAKASLTSARTTANAIY 202 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehh--hhhHHHHHHhcchhHHHHHHHHHHhhcccc
Confidence 45888999999999999999999998888776544332222 225667777777777777666654443333
No 449
>PF02748 PyrI_C: Aspartate carbamoyltransferase regulatory chain, metal binding domain; InterPro: IPR020542 Aspartate carbamoyltransferase (aspartate transcarbamylase, ATCase) 2.1.3.2 from EC is an allosteric enzyme that plays a central role in the regulation of the pyrimidine pathway in bacteria. The holoenzyme is a dodecamer composed of six catalytic chains, each with an active site, and six regulatory chains lacking catalytic activity []. The catalytic subunits exist as a dimer of catalytic trimers, (c3)2, while the regulatory subunits exist as a trimer of regulatory dimers, (r2)3, therefore the complete holoenzyme can be represented as (c3)2(r2)3. The association of the catalytic subunits c3 with the regulatory subunits r2 is responsible for the establishment of positive co-operativity between catalytic sites for the binding of aspartate and it dictates the pattern of allosteric response toward nucleotide effectors. ATCase from Escherichia coli is the most extensively studied allosteric enzyme []. The crystal structure of the T-state, the T-state with CTP bound, the R-state with N-phosphonacetyl-L-aspartate (PALA) bound, and the R-state with phosphonoacetamide plus malonate bound have been used in interpreting kinetic and mutational studies. A high-resolution structure of E. coli ATCase in the presence of PALA (a bisubstrate analog) allows a detailed description of the binding at the active site of the enzyme and allows a detailed model of the tetrahedral intermediate to be constructed. The entire regulatory chain has been traced showing that the N-terminal regions of the regulatory chains R1 and R6 are located in close proximity to each other and to the regulatory site. This portion of the molecule may be involved in the observed asymmetry between the regulatory binding sites as well as in the heterotropic response of the enzyme []. The C-terminal domain of the regulatory chains have a rubredoxin-like zinc-bound fold. ATCase from Enterobacter agglomerans (Erwinia herbicola) (Pantoea agglomerans) differs from the other investigated enterobacterial ATCases by its absence of homotropic co-operativity toward the substrate aspartate and its lack of response to ATP which is an allosteric effector (activator) of this family of enzymes. Nevertheless, the E. herbicola ATCase has the same quaternary structure, two trimers of catalytic chains with three dimers of regulatory chains, (c3)2(r2)3, as other enterobacterial ATCases and shows extensive primary structure conservation []. This entry represents the C-terminal domain.; PDB: 2YWW_B 1SKU_D 1Q95_L 8ATC_B 3AT1_D 1RAI_D 4E2F_D 1NBE_B 6AT1_B 2FZC_D ....
Probab=29.32 E-value=34 Score=23.27 Aligned_cols=36 Identities=19% Similarity=0.533 Sum_probs=21.0
Q ss_pred hCccCCCCCCcc----c-----ccCCCCCCcccCCCCCcCCHHHH
Q 012829 265 GYRCKDDGCSGF----L-----LRDSDDKGFTCQQCGLVRSKEEI 300 (455)
Q Consensus 265 ~~~C~~~~C~g~----~-----~~~~~~~~~~C~~C~~~~~~~~~ 300 (455)
-++|++++|-.. + +.+.+...+.|.-|+...+.+++
T Consensus 6 vl~C~Np~CITn~~E~v~~~F~v~~~~~~~~rC~YCe~~~~~~eI 50 (52)
T PF02748_consen 6 VLKCPNPNCITNSNEPVESRFYVIDKEPIKLRCHYCERIITEDEI 50 (52)
T ss_dssp SSE-SSTTBTTT-TSSS--EEEEEETTTCEEEETTT--EEEHHHH
T ss_pred EEEcCCCCcccCCCCCCCceEEEEeCCCCEEEeeCCCCEecccEE
Confidence 367888888322 1 11234567889999998876654
No 450
>PF15469 Sec5: Exocyst complex component Sec5
Probab=28.98 E-value=1.1e+02 Score=26.64 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=34.0
Q ss_pred hhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829 401 EWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 401 ~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
+...|+|+.++..|.+|..++..+.+ +.+....+...++.+..++.
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~~~-~~~vf~~v~~eve~ii~~~r 141 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKYKQ-QVPVFQKVWSEVEKIIEEFR 141 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999998865 55555556666666555443
No 451
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=28.84 E-value=6.9e+02 Score=26.12 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=49.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC----CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 353 EKLIKILMELEDWKEALAYCQLTIPVYQRVYP----QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 353 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g----~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
+++..-++..|.-+++++|...+....|...| .+=|-+.-.+..+-..|...|...+|+...++|+.
T Consensus 155 Y~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ 225 (542)
T PF14858_consen 155 YTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALA 225 (542)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 44555666778889999999888777776665 34444555566667778889999999998888773
No 452
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=28.79 E-value=5.8e+02 Score=26.29 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=31.3
Q ss_pred HHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829 411 IKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 449 (455)
Q Consensus 411 ~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~ 449 (455)
+.-++.-+..+...||++||.++++...++.++..+...
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 444566667777899999999999999999998887554
No 453
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=28.57 E-value=32 Score=22.61 Aligned_cols=12 Identities=17% Similarity=0.908 Sum_probs=9.6
Q ss_pred ccccCCHHHhHh
Q 012829 47 VVWYCGSNCQKL 58 (455)
Q Consensus 47 ~~~yCs~~C~~~ 58 (455)
..+|||+.|+..
T Consensus 24 ~Y~FCS~~C~~~ 35 (47)
T PF04945_consen 24 TYYFCSEGCKEK 35 (47)
T ss_dssp EEEESSHHHHHH
T ss_pred EEEEcCHHHHHH
Confidence 357999999874
No 454
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.54 E-value=35 Score=18.80 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=12.4
Q ss_pred cCccccCcCC--CcCCCCCCc
Q 012829 29 RCDGCFASSN--LKKCSACQV 47 (455)
Q Consensus 29 ~C~~C~~~~~--~~~C~~C~~ 47 (455)
.|.+|.+..+ ...|+.|+.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 4777877743 556777764
No 455
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=28.44 E-value=34 Score=32.44 Aligned_cols=32 Identities=34% Similarity=0.848 Sum_probs=25.7
Q ss_pred HhhCccCCCCCCcccccCCCCCCcccCC-CCCc
Q 012829 263 LEGYRCKDDGCSGFLLRDSDDKGFTCQQ-CGLV 294 (455)
Q Consensus 263 ~~~~~C~~~~C~g~~~~~~~~~~~~C~~-C~~~ 294 (455)
+.|+.||+++|+..+++.++.....|.. ||..
T Consensus 313 ~gGVlCP~pgCG~gll~EPD~rkvtC~~gCgf~ 345 (446)
T KOG0006|consen 313 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGCGFA 345 (446)
T ss_pred cCCEecCCCCCCcccccCCCCCcccCCCCchhH
Confidence 4489999999998888888877778876 7764
No 456
>PRK05978 hypothetical protein; Provisional
Probab=28.17 E-value=41 Score=28.51 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=8.6
Q ss_pred ccCCCCCcCCHH
Q 012829 287 TCQQCGLVRSKE 298 (455)
Q Consensus 287 ~C~~C~~~~~~~ 298 (455)
.|..||...+.+
T Consensus 54 ~C~~CG~~~~~~ 65 (148)
T PRK05978 54 HCAACGEDFTHH 65 (148)
T ss_pred CccccCCccccC
Confidence 589998876543
No 457
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=28.10 E-value=26 Score=29.47 Aligned_cols=28 Identities=18% Similarity=0.675 Sum_probs=12.8
Q ss_pred ccCCCCCCcccccCCCCCCcccCCCCCcC
Q 012829 267 RCKDDGCSGFLLRDSDDKGFTCQQCGLVR 295 (455)
Q Consensus 267 ~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 295 (455)
.|++..|+..+... ++..|.|.+|+...
T Consensus 20 aC~~~~C~kKv~~~-~~~~y~C~~C~~~~ 47 (146)
T PF08646_consen 20 ACPNEKCNKKVTEN-GDGSYRCEKCNKTV 47 (146)
T ss_dssp E-TSTTTS-B-EEE-TTTEEEETTTTEEE
T ss_pred CCCCccCCCEeecC-CCcEEECCCCCCcC
Confidence 45544555444433 23346677676653
No 458
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=27.81 E-value=2.9e+02 Score=27.32 Aligned_cols=66 Identities=15% Similarity=0.072 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh-----HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP-----LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp-----~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
.+.|..+|.++++++.+ +..+...+.+-+++++ ++..-.|-||..+....++.+|-..|.+|..-.
T Consensus 180 aNlL~~iY~Rl~~~~l~----~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c 250 (413)
T COG5600 180 ANLLFQIYLRLGRFKLC----ENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQC 250 (413)
T ss_pred HHHHHHHHHHhccHHHH----HHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 35677889999887555 4445555556667777 234456678999999999999999988887533
No 459
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.53 E-value=6.1e+02 Score=25.07 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=34.0
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 384 (455)
|..-+..-.|++|+++|++++. +++.++..--.++-.|.++.-++-+ +..+..|-+-+|
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvs----qevl~vYL~q~p 216 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVS----QEVLKVYLRQFP 216 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhH----HHHHHHHHHhCC
Confidence 4444444578899999988874 2455554444566666666554444 334444544444
No 460
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.46 E-value=3.1e+02 Score=28.14 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=46.8
Q ss_pred HHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 358 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
..+.-++|++...-.+++..++++.+.-+|..+. ...+-+..-+......-|...+.+|+.++-++
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~it-LWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNIT-LWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccch-HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 4555678888888888888888888876665442 23344666667778888888888888776443
No 461
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.15 E-value=5.5e+02 Score=24.37 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=63.5
Q ss_pred HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHH
Q 012829 315 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 394 (455)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l 394 (455)
...+..|++.+..+.|++.+......+-.++. -.+.+++...-....+...--++++..++.++..- +...--..-
T Consensus 73 KI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS--EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTN 148 (440)
T KOG1464|consen 73 KINFRLGNYKEMMERYKQLLTYIKSAVTRNYS--EKSINSILDYISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTN 148 (440)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeecc
Confidence 34456788888888888877643322221111 12333333322333444555566666666655321 111111223
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829 395 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 429 (455)
Q Consensus 395 ~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h 429 (455)
.+||++++..|+|.+-.+.+++--.-....-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 46789999999998888888877776667777664
No 462
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=27.05 E-value=2.7e+02 Score=20.85 Aligned_cols=56 Identities=9% Similarity=-0.105 Sum_probs=37.4
Q ss_pred hcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 361 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 361 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
.+.+.++|+...+++++... +.|..=..+--|..++.+.|+|++++++-.+=++|.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred ccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778887777766543 233443444556778999999999988855544443
No 463
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=26.99 E-value=2.3e+02 Score=29.91 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=25.1
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829 394 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 440 (455)
Q Consensus 394 l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~ 440 (455)
.+-+|..+..+.+.+.|+.++++|++ ..++.|...+.+.++.
T Consensus 679 ~~~~g~~~l~l~~i~~a~~~~~~a~~-----~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 679 FLSLGNAYLALKNISGALEAFRQALK-----LTTKCPECENSLKLIR 720 (886)
T ss_pred HHhcchhHHHHhhhHHHHHHHHHHHh-----cCCCChhhHHHHHHHH
Confidence 34456666666677777777777766 3455665555444443
No 464
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=26.99 E-value=1.9e+02 Score=28.65 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
.|-..+..++..|......+++.+++..|+.|...++.
T Consensus 247 ~~~f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~ 284 (361)
T cd09239 247 IAYYASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEE 284 (361)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777788777788888888888888775533
No 465
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=26.83 E-value=3.3e+02 Score=23.55 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=36.9
Q ss_pred cCCCChHHHHHHHHHHHHhhhcCCc--------HHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 383 YPQFHPLLGLQYYTCGKLEWFLGDT--------ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 383 ~g~~hp~~~~~l~~La~l~~~~g~~--------~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
+-...|..++.++.+-.+|...|++ +-|..+|++-+.+.+. .++..+.++.+....-
T Consensus 83 ~~S~NpiY~LilNgfk~lY~rvg~~YFs~~~aR~la~~fY~~L~~~~~~---~~~~~v~~~vr~yg~~ 147 (164)
T PF07840_consen 83 FASGNPIYGLILNGFKGLYSRVGRYYFSNPEARELALNFYRELLEACEK---GDYDQVPDVVRQYGIE 147 (164)
T ss_dssp HHTS-HHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHC---T-CCGHHHHHHHHHHH
T ss_pred HhcCCCchhhHHcccHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHH
Confidence 3468899999999999999888765 4466667766665443 3555555555544433
No 466
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=26.46 E-value=3.1e+02 Score=21.28 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHH-------Hhhcc--------cCCccccHHHHHHHHHHHHHhcccHHHHHH
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEK-------LQKKL--------YHPFSVNLMQTREKLIKILMELEDWKEALA 370 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~-------~~~~~--------l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 370 (455)
.+++..-+|......|+|++|.+.++.+.+ .+.++ -.+.+..++++.+.|+.+.. ...
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l~~AH~~qt~llq~ea~g~~~~~slLlvHAqDhlMta~~-------~~~ 85 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEADEELLKAHKIQTELLQQEANGEKVEISLLLVHAQDHLMTAET-------ERD 85 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSS-HHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhhhhHHHHHHHHH-------HHH
Confidence 456666677777788899988877665443 12111 12334455567777766544 334
Q ss_pred HHHHhhhhHH
Q 012829 371 YCQLTIPVYQ 380 (455)
Q Consensus 371 ~~~~~l~~~~ 380 (455)
+.+..+.+|+
T Consensus 86 la~e~i~lyk 95 (96)
T PF02255_consen 86 LAKEMIDLYK 95 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 4455555554
No 467
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=25.84 E-value=5.3e+02 Score=23.79 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHhhhhH---HhhcCCCChH---------------HHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHhchh
Q 012829 363 EDWKEALAYCQLTIPVY---QRVYPQFHPL---------------LGLQYYTCGKLEWFLG-DTENAIKSMTEAVEILRI 423 (455)
Q Consensus 363 g~~~~A~~~~~~~l~~~---~~~~g~~hp~---------------~~~~l~~La~l~~~~g-~~~eA~~~l~~A~~i~~~ 423 (455)
.+|.++++-++.+-.-. .+.+|..||. .|+.+.+-|-+-...| +...++..|..|+-.++.
T Consensus 119 ~rfneclekae~lr~~l~~~~~~l~~~~~~~~~~~~itAekLiYdrALemsr~AA~~El~g~~~~~ce~~Y~tA~~lLe~ 198 (238)
T PF12063_consen 119 ERFNECLEKAEFLRLRLQEAQKQLPDDHPSMPSSSGITAEKLIYDRALEMSRTAAVDELFGENLEGCEQRYETAIWLLEA 198 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCccccccccCccccCHHHHHHHHHHHHHHHHHHHHHhCcCHhHHHHHHHHHHHHHHH
Confidence 46666666655543333 6677766642 2444444455555667 888888889988877766
Q ss_pred ccCCC
Q 012829 424 THGTN 428 (455)
Q Consensus 424 ~~G~~ 428 (455)
.+-..
T Consensus 199 Ll~~~ 203 (238)
T PF12063_consen 199 LLDDD 203 (238)
T ss_pred HHhHh
Confidence 54433
No 468
>COG2158 Uncharacterized protein containing a Zn-finger-like domain [General function prediction only]
Probab=25.30 E-value=1.2e+02 Score=24.00 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=22.7
Q ss_pred CCCCCCcccCCCCCcCCHHHHHHHHHHHHHH
Q 012829 280 DSDDKGFTCQQCGLVRSKEEIKKIASEVNIL 310 (455)
Q Consensus 280 ~~~~~~~~C~~C~~~~~~~~~~~~~~e~~~l 310 (455)
.++.+.|.|..|...-+.+.++.+.+++..+
T Consensus 57 ~~G~~VwSC~dC~~iH~ke~~~~ilr~ll~~ 87 (112)
T COG2158 57 SNGRKVWSCSDCHWIHRKEGAEEILRELLEV 87 (112)
T ss_pred CCCCEEeeccccceecccchHHHHHHHHHHH
Confidence 3456789999999888777777776655543
No 469
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=25.20 E-value=4.5e+02 Score=25.75 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccC--CCChhHHHHHHHHHHHHHHHh
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG--TNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G--~~hp~~~~~~~~l~~~~~~~~ 447 (455)
+-..+...+..|......+++.+|+..|+.|.+.++..-. +.-....++...+.....+.+
T Consensus 251 ~~f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a~~~~~~~~~~~~l~~~i~~~l~~ae 313 (346)
T cd09240 251 AYFHALAEYHQSLVAKAQKKFGEEIARLQHALELIKTAQSRAGEYVDVKDFAAKISRALTAAK 313 (346)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHh
Confidence 3344677777888888889999999999999886654422 111124444444444444443
No 470
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=25.08 E-value=42 Score=27.43 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=21.9
Q ss_pred CccCccccCcC-C----CcCCCCCCccccCCHHHhHh
Q 012829 27 ISRCDGCFASS-N----LKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 27 ~~~C~~C~~~~-~----~~~C~~C~~~~yCs~~C~~~ 58 (455)
...|++|..+. | .+.=...+..+|||..|.+.
T Consensus 4 ~e~CsFcG~kIyPG~G~~fVR~DGkvf~FcssKC~k~ 40 (131)
T PRK14891 4 TRTCDYTGEEIEPGTGTMFVRKDGTVLHFVDSKCEKN 40 (131)
T ss_pred eeeecCcCCcccCCCCcEEEecCCCEEEEecHHHHHH
Confidence 35799998873 2 22224567778999999754
No 471
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.88 E-value=3.3e+02 Score=22.27 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=7.2
Q ss_pred CChHHHHHHHHHHHHhh
Q 012829 386 FHPLLGLQYYTCGKLEW 402 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~ 402 (455)
+.|--|..|..++++-.
T Consensus 14 ~~p~pgy~~~Eia~~t~ 30 (122)
T cd03572 14 DEPTPGYLYEEIAKLTR 30 (122)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 33334444444444433
No 472
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=24.86 E-value=1.1e+02 Score=20.64 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=15.2
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHHH
Q 012829 287 TCQQCGLVRSKEEIKKIASEVNILS 311 (455)
Q Consensus 287 ~C~~C~~~~~~~~~~~~~~e~~~l~ 311 (455)
.|+.|+...+.+....+..+.....
T Consensus 22 ~CPlC~r~l~~e~~~~li~~~~~~i 46 (54)
T PF04423_consen 22 CCPLCGRPLDEEHRQELIKKYKSEI 46 (54)
T ss_dssp E-TTT--EE-HHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 7999999998887777766665443
No 473
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.82 E-value=3.9e+02 Score=26.84 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhc
Q 012829 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 339 (455)
Q Consensus 298 ~~~~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~ 339 (455)
..++.....+-...+.+...-..+++++|+..|++.+.+...
T Consensus 13 a~Ir~ayk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 13 AQIRAAYKGAYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 455666666666677777777888999999999999886544
No 474
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=24.63 E-value=51 Score=33.13 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=11.7
Q ss_pred CCcccCCCCCcCCHH
Q 012829 284 KGFTCQQCGLVRSKE 298 (455)
Q Consensus 284 ~~~~C~~C~~~~~~~ 298 (455)
..+.|..||+..+.-
T Consensus 182 ~~f~C~~C~~~seLl 196 (446)
T PF07227_consen 182 MQFHCRACGKTSELL 196 (446)
T ss_pred eEEEccCCCChhhHH
Confidence 357899999987653
No 475
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.48 E-value=5.1e+02 Score=23.15 Aligned_cols=141 Identities=17% Similarity=0.104 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhh---cccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 012829 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQK---KLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL 374 (455)
Q Consensus 298 ~~~~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~---~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 374 (455)
+++-++..++..+...+......|++++|..-++++.+... +.+.+ +|.+.. .+.+-..++.|.+|..++..
T Consensus 20 EE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~-~pel~~----ag~~~~a~QEyvEA~~l~~~ 94 (204)
T COG2178 20 EEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAG-FPELYF----AGFVTTALQEYVEATLLYSI 94 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHH----HHhhcchHHHHHHHHHHHHH
Confidence 45667888898999999999999999999877766654322 12221 222211 11122345677777766544
Q ss_pred hhhhHHhhcCCCChH---H--HHHHHHHHHH----------hhhcCCcHHHHHHHHHHHHhchhccCCCCh--hHHHHHH
Q 012829 375 TIPVYQRVYPQFHPL---L--GLQYYTCGKL----------EWFLGDTENAIKSMTEAVEILRITHGTNSP--FMKELIL 437 (455)
Q Consensus 375 ~l~~~~~~~g~~hp~---~--~~~l~~La~l----------~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp--~~~~~~~ 437 (455)
.-+. -.| +|. + ...+..+|.+ ....|++++|+..+.=--.|++...-=+-| ++..+.+
T Consensus 95 l~~~---~~p--s~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~~l~~~LR~ 169 (204)
T COG2178 95 LKDG---RLP--SPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPKALVPGLRQ 169 (204)
T ss_pred HhcC---CCC--CHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHH
Confidence 3222 112 221 1 1223333322 334688899988776555555544333444 3344777
Q ss_pred HHHHHHHHHhh
Q 012829 438 KLEEAQAEASY 448 (455)
Q Consensus 438 ~l~~~~~~~~~ 448 (455)
++..+++-++.
T Consensus 170 K~Dvar~~lek 180 (204)
T COG2178 170 KQDVARSLLEK 180 (204)
T ss_pred HHHHHHHHHHH
Confidence 77777665543
No 476
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=24.44 E-value=49 Score=18.71 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=13.7
Q ss_pred ccCccccCcCC--CcCCCCCCc
Q 012829 28 SRCDGCFASSN--LKKCSACQV 47 (455)
Q Consensus 28 ~~C~~C~~~~~--~~~C~~C~~ 47 (455)
..|..|.+..+ ...|+.|+.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 56888888632 566777764
No 477
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=24.37 E-value=3e+02 Score=20.36 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL 340 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~ 340 (455)
.+..+...|..+-..|++++|+..|+.+.+...++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34455566777778899999999999988765554
No 478
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=24.37 E-value=5.1e+02 Score=23.03 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=52.6
Q ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC-CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 344 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 344 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~-~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
....+..+..+....+...++++.|..+...+-... .|+ .--......+--|-+.+..|+.+++.+..++++++++
T Consensus 123 ~~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~---~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~ 199 (220)
T TIGR01716 123 YRRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKIL---DPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFD 199 (220)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh---chhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 334455677777777888888888876655532211 222 2223344444456666678989999999999999998
Q ss_pred hccCCC
Q 012829 423 ITHGTN 428 (455)
Q Consensus 423 ~~~G~~ 428 (455)
.. |-+
T Consensus 200 ~l-g~~ 204 (220)
T TIGR01716 200 EL-GYP 204 (220)
T ss_pred Hc-CCH
Confidence 84 544
No 479
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=24.36 E-value=3.4e+02 Score=21.01 Aligned_cols=30 Identities=13% Similarity=-0.069 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChHHHHHHH
Q 012829 301 KKIASEVNILSKKTLALTSCGNHQEVVSTY 330 (455)
Q Consensus 301 ~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~ 330 (455)
+.+...+....+.|......|.+..+....
T Consensus 2 ~~~~~~A~~~l~~A~~~~~~~~~~~a~~~a 31 (118)
T PF05168_consen 2 QDWLEKAEEDLKAAEILLEEGDYNWAVFHA 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455666777777777777888887776544
No 480
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=24.35 E-value=52 Score=35.43 Aligned_cols=13 Identities=15% Similarity=0.013 Sum_probs=11.2
Q ss_pred CCCCCCCeEEEeC
Q 012829 3 SFHVSGEVIISQE 15 (455)
Q Consensus 3 ~~i~~Ge~il~e~ 15 (455)
++|++||.|.+++
T Consensus 363 ~di~iGD~V~V~r 375 (669)
T PRK14350 363 IGLNVGDVVKISR 375 (669)
T ss_pred cCCCCCCEEEEEe
Confidence 6899999999875
No 481
>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins.
Probab=24.31 E-value=44 Score=23.32 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=22.0
Q ss_pred CCccCccccCcCCC--cCCCCCCccccCCHHHhHhh
Q 012829 26 SISRCDGCFASSNL--KKCSACQVVWYCGSNCQKLD 59 (455)
Q Consensus 26 ~~~~C~~C~~~~~~--~~C~~C~~~~yCs~~C~~~~ 59 (455)
-...|..|-+.+.. -..---+...|||.+|+...
T Consensus 15 FL~~C~~C~k~L~~~~DiymYrGd~aFCS~ECR~~q 50 (58)
T PF04570_consen 15 FLSFCYLCKKKLDPGKDIYMYRGDKAFCSEECRSQQ 50 (58)
T ss_pred HHHHHHccCCCCCCCCCeeeeccccccccHHHHHHH
Confidence 35789999988531 11112255679999999753
No 482
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=24.27 E-value=53 Score=21.50 Aligned_cols=31 Identities=19% Similarity=0.537 Sum_probs=17.9
Q ss_pred hhHhhCccCCCCCCcc-cccCCCCCCcccCCCCC
Q 012829 261 AILEGYRCKDDGCSGF-LLRDSDDKGFTCQQCGL 293 (455)
Q Consensus 261 ~~~~~~~C~~~~C~g~-~~~~~~~~~~~C~~C~~ 293 (455)
.+.+++.|| .|++. .....+...|.|..|++
T Consensus 14 RW~~g~~CP--~Cg~~~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 14 RWPDGFVCP--HCGSTKHYRLKTRGRYRCKACRK 45 (46)
T ss_pred cCCCCCCCC--CCCCeeeEEeCCCCeEECCCCCC
Confidence 345578887 45432 11112246789999975
No 483
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.04 E-value=1.3e+02 Score=30.55 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=26.6
Q ss_pred HHHHHhchhccCCCChhHHHHHHHHHHHHHHHhh
Q 012829 415 TEAVEILRITHGTNSPFMKELILKLEEAQAEASY 448 (455)
Q Consensus 415 ~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~ 448 (455)
+.-+.-+...||++||.+..+...++.++..+..
T Consensus 267 e~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 267 ESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3344555677999999999999999998887654
No 484
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=23.94 E-value=45 Score=35.94 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=21.4
Q ss_pred CCCCCCCeEEEeC-----CceeecCCCC---------CCccCccccCc
Q 012829 3 SFHVSGEVIISQE-----PYVCVPNNSS---------SISRCDGCFAS 36 (455)
Q Consensus 3 ~~i~~Ge~il~e~-----P~~~~~~~~~---------~~~~C~~C~~~ 36 (455)
++|++||.|.+++ |.+..+-... ...+|..|...
T Consensus 366 ~~i~iGD~V~V~raGdVIP~i~~vv~~~r~~~~~~~~~P~~CP~Cgs~ 413 (665)
T PRK07956 366 KDIRIGDTVVVRRAGDVIPEVVGVVLEKRPGDEREIVMPTHCPVCGSE 413 (665)
T ss_pred cCCCCCCEEEEEECCCccceeeeeecccCCCCCccCcCCCCCCCCCCE
Confidence 5899999999976 6664432211 24566666654
No 485
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=23.82 E-value=3.7e+02 Score=21.26 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEK 335 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~ 335 (455)
.+++..-+|......|+|++|.+..+.+.+
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666677777888999999877765544
No 486
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=23.78 E-value=3.3e+02 Score=25.00 Aligned_cols=33 Identities=9% Similarity=0.048 Sum_probs=24.8
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
+|.+..+.+-|+-.+...|+|+.|.+.....++
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 456666777777777788999999887776554
No 487
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.78 E-value=4.4e+02 Score=28.86 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=22.0
Q ss_pred HhchhccCCCChhHHHHHHHHHHHHHHHhh
Q 012829 419 EILRITHGTNSPFMKELILKLEEAQAEASY 448 (455)
Q Consensus 419 ~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~ 448 (455)
.-+...||++||.+..+...++.+..++..
T Consensus 328 ~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~ 357 (726)
T PRK09841 328 AEISQLYKKDHPTYRALLEKRQTLEQERKR 357 (726)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHHH
Confidence 334557899999999988877777665543
No 488
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=23.78 E-value=2.4e+02 Score=28.01 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=31.0
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh---------cccHHHHHHHHHHhhhhHHhhcC
Q 012829 319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME---------LEDWKEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~---------~g~~~~A~~~~~~~l~~~~~~~g 384 (455)
..|+.++|+.++..++.... ..++++ .--++.+|-+ ...+++|...|+++.++-...|+
T Consensus 194 ~~gdre~Al~il~~~l~~~~----~~~~d~---~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 194 KPGDREKALQILLPVLESDE----NPDPDT---LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred cCCCHHHHHHHHHHHHhccC----CCChHH---HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 36899999998877654332 223333 3334444432 22345566666665554433333
No 489
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=23.73 E-value=48 Score=28.09 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=19.0
Q ss_pred CCccCccccCcC------CCcCCCCCCcccc
Q 012829 26 SISRCDGCFASS------NLKKCSACQVVWY 50 (455)
Q Consensus 26 ~~~~C~~C~~~~------~~~~C~~C~~~~y 50 (455)
..-+|..|.... .+.|||+|+...|
T Consensus 111 G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~~F 141 (146)
T PF07295_consen 111 GTLVCENCGHEVELTHPERLPPCPKCGHTEF 141 (146)
T ss_pred ceEecccCCCEEEecCCCcCCCCCCCCCCee
Confidence 357899998872 3789999987554
No 490
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=23.71 E-value=6.4e+02 Score=29.07 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=10.4
Q ss_pred HHHHHhcccHHHHHHHHHH
Q 012829 356 IKILMELEDWKEALAYCQL 374 (455)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~ 374 (455)
..+|...|+|.+|+....+
T Consensus 972 l~a~~~~~dWr~~l~~a~q 990 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQ 990 (1265)
T ss_pred HHHHHHhccHHHHHHHHHh
Confidence 3445555666666655554
No 491
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=23.51 E-value=2.6e+02 Score=23.85 Aligned_cols=72 Identities=18% Similarity=0.087 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHH--HHHHHHhcccHHHHHHHHHHhhhh
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREK--LIKILMELEDWKEALAYCQLTIPV 378 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~--L~~~~~~~g~~~~A~~~~~~~l~~ 378 (455)
.+.+.....+......|+.+.|.+.++.+-. .-.+-....++..+... -+..++..|++.+|...+..+++.
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~--ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGS--EIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT---EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcc--cceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 3445556667777889999999887654422 11222334555555544 445668889999999888877764
No 492
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=23.47 E-value=3e+02 Score=24.70 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=35.9
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALA 370 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 370 (455)
++...+.++++.++-+++++.. +.+..=.+....|+.+|..+|+++.|.-
T Consensus 150 yY~krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 150 YYTKRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 4556688899999888887643 3322224556679999999999999854
No 493
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=23.36 E-value=93 Score=31.62 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=34.1
Q ss_pred CCCCCCCcEEEEeCCEEEEEEecccCCCCeeEEee--cCCCCCHHHHHHHHhccCCe
Q 012829 187 NHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISY--IETAGSTMTRQKALKEQYLF 241 (455)
Q Consensus 187 NHSC~PN~~~~~~~~~~~v~a~r~I~~GeEi~isY--~~~~~~~~~R~~~L~~~y~F 241 (455)
|..=-||+.+. +.....||.++|+.+++-...+| ++...+.+.|+..++....|
T Consensus 296 ~~~iFPNl~~~-~~~~~~ir~~~P~~~d~tev~~~~~~~~~~~~e~~~~r~r~~~~~ 351 (433)
T TIGR03229 296 NLCLYPNVYLM-DQFSSQIRVFRPISVDKTEVTIYCIAPKGESAEARAKRIRQYEDF 351 (433)
T ss_pred EEEEcCcchhh-ccCCceEEEEEECCCCeEEEEEEEEEECCCCHHHHHHHHHHHhcc
Confidence 33445666544 23345789999999998655544 45556777777777754444
No 494
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=23.31 E-value=53 Score=21.43 Aligned_cols=8 Identities=38% Similarity=1.360 Sum_probs=3.7
Q ss_pred cccCCCCC
Q 012829 286 FTCQQCGL 293 (455)
Q Consensus 286 ~~C~~C~~ 293 (455)
..|..||.
T Consensus 20 irC~~CG~ 27 (44)
T smart00659 20 VRCRECGY 27 (44)
T ss_pred eECCCCCc
Confidence 44444444
No 495
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=23.11 E-value=37 Score=21.04 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=15.8
Q ss_pred ccCccccCcC-------C----CcCCCCCCccc
Q 012829 28 SRCDGCFASS-------N----LKKCSACQVVW 49 (455)
Q Consensus 28 ~~C~~C~~~~-------~----~~~C~~C~~~~ 49 (455)
..|..|.+.. + .++|+.|+.++
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 4688888761 1 47899998764
No 496
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=22.97 E-value=1.2e+02 Score=29.43 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
-..|..+.++|.+|..-|.++.|.-+|-+=..++-... +.||.++.+....+|++..+.
T Consensus 32 fRsg~ei~rmA~VY~~EgN~enafvLy~ry~tLfiEki-pkHrDy~s~k~ek~d~~~klk 90 (424)
T KOG2880|consen 32 FRSGTEILRMANVYLEEGNVENAFVLYLRYITLFIEKI-PKHRDYRSVKPEKEDIRKKLK 90 (424)
T ss_pred hhhhHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHhc-ccCcchhhhchhHHHHHHHHH
Confidence 34578888999999999999999999888777766542 788888877777777766554
No 497
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.84 E-value=4.6e+02 Score=22.05 Aligned_cols=74 Identities=16% Similarity=0.029 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
.....+++++......--+.+.|.++... -|-.+...-|...+++ .++=.+|+...||-+.....+++.-+++.
T Consensus 5 ~~~~sfl~~l~~~~~~~~~adDP~lAa~~-Llf~Vm~ADG~v~~~E--~~a~r~il~~~f~i~~~~l~ali~~~e~~ 78 (148)
T COG4103 5 ERLLSFLKQLPGGLDGDNSADDPRLAAAA-LLFHVMEADGTVSESE--REAFRAILKENFGIDGEELDALIEAGEEA 78 (148)
T ss_pred HHHHHHHHhccCccccCcCCCCHHHHHHH-HHHHHHhcccCcCHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34445555555544444457778777666 4444555556665555 33344566666666666555555555554
No 498
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=22.77 E-value=7.4e+02 Score=24.63 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=41.0
Q ss_pred HHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 354 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 354 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..+....+.++|..|.+.+..+.. + +++.-....+...-.|-.+|...++++|.+.+++....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~---r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLR---R-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---h-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344456678999999998877654 2 44222222222333355578899999999999887664
No 499
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=22.55 E-value=3.1e+02 Score=19.85 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhc
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 339 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~ 339 (455)
++..+...|...-..|++++|+..|..+++....
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4445566677777789999999999988876544
No 500
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=22.32 E-value=4.8e+02 Score=21.98 Aligned_cols=50 Identities=14% Similarity=0.091 Sum_probs=28.7
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHh
Q 012829 318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 375 (455)
Q Consensus 318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 375 (455)
..+|+-++...++..+.. ++..-......++.+|...|+-.+|-++.+++
T Consensus 97 v~~~kkDqLdki~~~l~k--------n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKK--------NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp HHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHhh--------ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 445565555555444421 22223344567899999999999998887665
Done!