Query 012829
Match_columns 455
No_of_seqs 246 out of 2788
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 17:02:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qww_A SET and MYND domain-con 100.0 2.1E-76 7E-81 593.3 38.4 405 3-441 25-432 (433)
2 3n71_A Histone lysine methyltr 100.0 4.3E-76 1.5E-80 599.9 41.2 408 3-448 25-450 (490)
3 3qwp_A SET and MYND domain-con 100.0 4.5E-75 1.5E-79 584.8 35.3 399 3-448 23-428 (429)
4 3rq4_A Histone-lysine N-methyl 99.6 5.1E-16 1.7E-20 141.3 4.5 80 161-251 155-236 (247)
5 3s8p_A Histone-lysine N-methyl 99.5 5.1E-15 1.7E-19 136.0 4.2 82 160-251 183-265 (273)
6 3n71_A Histone lysine methyltr 99.4 4.9E-13 1.7E-17 135.8 13.3 113 307-419 351-463 (490)
7 2odd_A Protein CBFA2T1; MYND z 99.4 1.3E-13 4.5E-18 98.8 2.0 59 3-71 2-60 (64)
8 1n3j_A A612L, histone H3 lysin 99.3 3.2E-13 1.1E-17 110.2 3.8 54 175-228 57-112 (119)
9 3edt_B KLC 2, kinesin light ch 99.3 1E-10 3.5E-15 108.5 18.0 141 307-447 43-183 (283)
10 3qww_A SET and MYND domain-con 99.2 4.6E-11 1.6E-15 119.4 12.0 87 360-446 309-395 (433)
11 2w5y_A Histone-lysine N-methyl 99.2 7.9E-12 2.7E-16 110.0 5.2 55 182-245 124-182 (192)
12 3edt_B KLC 2, kinesin light ch 99.2 2.9E-10 1E-14 105.4 13.7 129 317-445 11-139 (283)
13 3qwp_A SET and MYND domain-con 99.2 1.7E-10 5.8E-15 115.4 12.3 98 307-404 329-426 (429)
14 3nf1_A KLC 1, kinesin light ch 99.1 2E-09 7E-14 101.3 17.8 139 309-447 71-209 (311)
15 3nf1_A KLC 1, kinesin light ch 99.1 1.9E-09 6.6E-14 101.5 16.7 138 308-445 28-165 (311)
16 3f9x_A Histone-lysine N-methyl 99.1 2.5E-11 8.7E-16 105.2 2.7 55 182-236 107-165 (166)
17 3ope_A Probable histone-lysine 99.0 1.3E-10 4.6E-15 105.1 3.8 56 182-246 146-205 (222)
18 3ooi_A Histone-lysine N-methyl 99.0 2.2E-10 7.5E-15 104.3 4.9 55 182-246 165-223 (232)
19 4gcn_A Protein STI-1; structur 99.0 1.7E-08 5.9E-13 82.9 16.0 105 307-420 8-112 (127)
20 3smt_A Histone-lysine N-methyl 99.0 5.4E-10 1.9E-14 113.2 6.4 92 147-244 237-329 (497)
21 2xev_A YBGF; tetratricopeptide 99.0 2.1E-08 7.1E-13 81.7 14.9 122 310-446 5-126 (129)
22 4gco_A Protein STI-1; structur 98.9 3.4E-08 1.1E-12 81.0 14.9 107 308-435 14-120 (126)
23 3h6l_A Histone-lysine N-methyl 98.9 5E-10 1.7E-14 104.3 4.0 55 182-246 190-248 (278)
24 3qxy_A N-lysine methyltransfer 98.9 1.2E-09 4.3E-14 109.5 6.8 90 148-243 184-277 (449)
25 3rkv_A Putative peptidylprolyl 98.9 5.1E-08 1.8E-12 83.2 15.1 113 305-430 9-131 (162)
26 3gyz_A Chaperone protein IPGC; 98.9 5.5E-08 1.9E-12 82.6 14.7 113 307-440 36-148 (151)
27 3hna_A Histone-lysine N-methyl 98.9 4.4E-10 1.5E-14 105.4 1.6 55 183-245 217-279 (287)
28 2f69_A Histone-lysine N-methyl 98.8 1.4E-09 4.8E-14 100.4 4.2 46 182-227 186-236 (261)
29 2xcb_A PCRH, regulatory protei 98.8 1.3E-07 4.5E-12 78.9 15.7 121 308-449 19-139 (142)
30 1ml9_A Histone H3 methyltransf 98.8 1.8E-09 6.1E-14 102.4 4.5 64 182-245 220-292 (302)
31 3upv_A Heat shock protein STI1 98.8 1.1E-07 3.8E-12 77.3 14.6 121 307-445 4-124 (126)
32 2dj8_A Protein CBFA2T1; zinc f 98.8 2.1E-09 7.3E-14 75.5 2.7 45 26-71 14-58 (60)
33 2jw6_A Deformed epidermal auto 98.8 2.1E-09 7.3E-14 73.3 2.5 46 22-68 4-49 (52)
34 1mvh_A Cryptic LOCI regulator 98.8 3.9E-09 1.3E-13 99.6 5.1 45 182-226 213-265 (299)
35 2hr2_A Hypothetical protein; a 98.8 4.8E-07 1.6E-11 76.7 17.5 140 305-446 9-156 (159)
36 2vgx_A Chaperone SYCD; alterna 98.8 1.4E-07 4.8E-12 79.6 14.0 122 307-449 21-142 (148)
37 2r3a_A Histone-lysine N-methyl 98.7 6.9E-09 2.4E-13 97.8 5.5 44 182-225 215-266 (300)
38 3ro3_A PINS homolog, G-protein 98.7 4.4E-07 1.5E-11 75.9 16.1 133 307-445 9-141 (164)
39 1h3i_A Histone H3 lysine 4 spe 98.7 6.4E-09 2.2E-13 98.5 4.5 43 183-225 241-288 (293)
40 3sz7_A HSC70 cochaperone (SGT) 98.7 6.1E-07 2.1E-11 76.6 16.3 99 307-421 11-109 (164)
41 3bo5_A Histone-lysine N-methyl 98.7 1.1E-08 3.7E-13 96.1 5.3 45 182-226 205-254 (290)
42 2qpw_A PR domain zinc finger p 98.7 1.4E-08 4.9E-13 85.3 5.2 45 183-227 100-147 (149)
43 1elr_A TPR2A-domain of HOP; HO 98.7 1.4E-06 4.7E-11 70.2 16.2 104 308-420 5-108 (131)
44 3ulq_A Response regulator aspa 98.6 5.8E-07 2E-11 88.0 16.3 128 313-445 109-236 (383)
45 2fbn_A 70 kDa peptidylprolyl i 98.6 1.5E-06 5.3E-11 76.5 17.4 124 304-442 35-168 (198)
46 2od1_A Protein CBFA2T1; zinc f 98.6 1.1E-08 3.7E-13 71.8 2.2 44 26-70 12-55 (60)
47 2d8q_A BLU protein, zinc finge 98.6 2.4E-08 8.3E-13 72.1 4.1 45 27-72 15-59 (70)
48 3ulq_A Response regulator aspa 98.6 6.6E-07 2.3E-11 87.5 15.4 131 307-442 143-273 (383)
49 3gw4_A Uncharacterized protein 98.6 1.5E-06 5.1E-11 76.2 16.3 114 308-424 27-140 (203)
50 3q49_B STIP1 homology and U bo 98.6 2.2E-06 7.6E-11 70.1 16.1 100 308-423 10-109 (137)
51 2dba_A Smooth muscle cell asso 98.6 9.8E-07 3.4E-11 73.0 14.0 113 309-439 30-142 (148)
52 3ro3_A PINS homolog, G-protein 98.6 1.1E-06 3.9E-11 73.3 14.3 111 309-423 51-161 (164)
53 3u3w_A Transcriptional activat 98.6 1.7E-06 5.9E-11 81.4 16.6 130 313-447 121-250 (293)
54 3qky_A Outer membrane assembly 98.6 1.1E-06 3.6E-11 81.2 14.6 118 308-440 16-141 (261)
55 1elw_A TPR1-domain of HOP; HOP 98.5 2.5E-06 8.6E-11 67.2 14.6 111 307-438 4-114 (118)
56 3u3w_A Transcriptional activat 98.5 1E-06 3.5E-11 82.9 14.3 114 308-424 156-270 (293)
57 1ihg_A Cyclophilin 40; ppiase 98.5 2.3E-06 7.8E-11 83.8 17.0 130 300-442 216-353 (370)
58 2h21_A Ribulose-1,5 bisphospha 98.5 7E-08 2.4E-12 96.8 6.2 89 147-244 158-257 (440)
59 2qfc_A PLCR protein; TPR, HTH, 98.5 1.5E-06 5.1E-11 81.9 14.7 114 307-424 155-270 (293)
60 3q15_A PSP28, response regulat 98.5 2.5E-06 8.5E-11 83.4 16.4 132 307-444 141-272 (378)
61 3q15_A PSP28, response regulat 98.5 2E-06 7E-11 84.0 15.7 113 307-424 182-294 (378)
62 4ga2_A E3 SUMO-protein ligase 98.5 1.7E-06 5.8E-11 72.9 13.0 110 311-441 35-145 (150)
63 1qqe_A Vesicular transport pro 98.5 4E-06 1.4E-10 78.9 16.8 106 314-423 44-150 (292)
64 4gyw_A UDP-N-acetylglucosamine 98.5 1.4E-06 4.8E-11 92.7 14.8 92 312-419 48-139 (723)
65 4g1t_A Interferon-induced prot 98.5 2E-06 6.8E-11 86.3 14.8 117 313-434 57-176 (472)
66 2qfc_A PLCR protein; TPR, HTH, 98.5 3.5E-06 1.2E-10 79.3 15.7 128 313-446 121-249 (293)
67 1a17_A Serine/threonine protei 98.5 8.8E-06 3E-10 68.6 16.8 108 305-433 11-118 (166)
68 3gw4_A Uncharacterized protein 98.5 3.2E-06 1.1E-10 74.0 14.3 115 307-424 66-180 (203)
69 4a1s_A PINS, partner of inscut 98.4 4.5E-06 1.6E-10 81.9 16.8 133 305-446 46-179 (411)
70 3k9i_A BH0479 protein; putativ 98.4 6.9E-07 2.4E-11 71.7 8.9 102 320-439 3-104 (117)
71 3qky_A Outer membrane assembly 98.4 2.7E-06 9.3E-11 78.4 14.1 126 310-450 92-249 (261)
72 2vyi_A SGTA protein; chaperone 98.4 7.2E-06 2.5E-10 65.7 14.8 105 307-432 12-116 (131)
73 2lni_A Stress-induced-phosphop 98.4 4.1E-06 1.4E-10 67.7 13.1 97 308-420 17-113 (133)
74 1hxi_A PEX5, peroxisome target 98.4 1.5E-06 5E-11 70.5 10.0 94 311-420 21-114 (121)
75 3urz_A Uncharacterized protein 98.4 7.8E-06 2.7E-10 72.8 15.7 107 307-434 4-126 (208)
76 2yhc_A BAMD, UPF0169 lipoprote 98.4 5.2E-06 1.8E-10 74.9 14.5 120 309-443 6-143 (225)
77 4g1t_A Interferon-induced prot 98.4 1.5E-06 5.1E-11 87.2 11.6 93 347-439 49-142 (472)
78 3ro2_A PINS homolog, G-protein 98.4 1.1E-05 3.7E-10 75.9 16.9 128 309-445 7-135 (338)
79 1p5q_A FKBP52, FK506-binding p 98.4 7.4E-06 2.5E-10 79.0 15.8 115 306-433 146-267 (336)
80 3sf4_A G-protein-signaling mod 98.4 9.6E-06 3.3E-10 78.9 16.5 135 309-449 229-363 (406)
81 1hz4_A MALT regulatory protein 98.3 8.5E-06 2.9E-10 79.1 15.8 113 310-424 56-168 (373)
82 4eqf_A PEX5-related protein; a 98.3 4.6E-06 1.6E-10 80.6 13.7 118 311-444 217-338 (365)
83 4gyw_A UDP-N-acetylglucosamine 98.3 4.5E-06 1.5E-10 88.7 14.3 105 307-432 9-113 (723)
84 3sf4_A G-protein-signaling mod 98.3 1.2E-05 4.2E-10 78.1 16.4 128 309-445 11-139 (406)
85 1wao_1 Serine/threonine protei 98.3 1.8E-06 6.2E-11 87.5 10.4 107 312-439 11-117 (477)
86 4a1s_A PINS, partner of inscut 98.3 1E-05 3.5E-10 79.3 15.6 131 309-445 225-355 (411)
87 1na0_A Designed protein CTPR3; 98.3 2.4E-05 8.1E-10 62.0 15.0 102 310-432 12-113 (125)
88 2ifu_A Gamma-SNAP; membrane fu 98.3 9.8E-06 3.3E-10 76.9 14.3 122 315-443 44-165 (307)
89 2c2l_A CHIP, carboxy terminus 98.3 2.1E-05 7.1E-10 73.7 16.3 99 308-422 5-103 (281)
90 2ifu_A Gamma-SNAP; membrane fu 98.3 1.5E-05 5E-10 75.6 15.3 112 308-424 77-188 (307)
91 3ro2_A PINS homolog, G-protein 98.3 1.9E-05 6.6E-10 74.1 15.6 132 309-446 185-316 (338)
92 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2E-05 6.7E-10 79.4 16.1 117 305-434 266-389 (457)
93 3vtx_A MAMA; tetratricopeptide 98.2 1.2E-05 4.1E-10 69.5 12.5 92 313-420 79-170 (184)
94 1qqe_A Vesicular transport pro 98.2 1.8E-05 6.2E-10 74.4 14.1 112 307-422 77-189 (292)
95 2e2e_A Formate-dependent nitri 98.2 3.4E-05 1.2E-09 66.2 14.8 119 308-447 45-166 (177)
96 3ieg_A DNAJ homolog subfamily 98.2 3.4E-05 1.2E-09 73.4 16.1 121 307-445 234-355 (359)
97 2kck_A TPR repeat; tetratricop 98.2 1.2E-05 4.1E-10 62.5 10.5 94 313-420 12-106 (112)
98 2pl2_A Hypothetical conserved 98.2 1.4E-05 4.6E-10 71.7 12.0 97 309-421 41-148 (217)
99 4gcn_A Protein STI-1; structur 98.2 1.2E-05 4.2E-10 65.5 10.4 88 347-443 6-93 (127)
100 2if4_A ATFKBP42; FKBP-like, al 98.2 1E-05 3.5E-10 78.1 11.3 118 304-439 176-307 (338)
101 1hz4_A MALT regulatory protein 98.1 7.3E-05 2.5E-09 72.4 17.5 126 311-442 18-144 (373)
102 1fch_A Peroxisomal targeting s 98.1 3.2E-05 1.1E-09 74.4 14.8 123 310-448 220-345 (368)
103 3uq3_A Heat shock protein STI1 98.1 6.8E-05 2.3E-09 67.8 16.1 106 306-421 4-109 (258)
104 4ga2_A E3 SUMO-protein ligase 98.1 4.4E-06 1.5E-10 70.4 7.4 95 317-432 7-101 (150)
105 4i17_A Hypothetical protein; T 98.1 2.7E-05 9.3E-10 69.8 13.2 115 308-440 77-224 (228)
106 2kat_A Uncharacterized protein 98.1 2.2E-05 7.4E-10 62.3 10.9 103 325-445 3-105 (115)
107 1hh8_A P67PHOX, NCF-2, neutrop 98.1 2.2E-05 7.7E-10 69.3 11.8 105 309-421 39-151 (213)
108 2pl2_A Hypothetical conserved 98.1 2.3E-05 7.8E-10 70.2 11.9 102 310-432 8-120 (217)
109 1fch_A Peroxisomal targeting s 98.1 1.2E-05 3.9E-10 77.5 10.4 112 309-428 253-367 (368)
110 3uq3_A Heat shock protein STI1 98.1 5.9E-05 2E-09 68.2 14.3 115 309-441 141-255 (258)
111 4i17_A Hypothetical protein; T 98.1 3.7E-05 1.3E-09 68.9 12.5 99 308-421 8-106 (228)
112 2yhc_A BAMD, UPF0169 lipoprote 98.1 6.2E-05 2.1E-09 67.7 13.9 125 309-448 43-199 (225)
113 4eqf_A PEX5-related protein; a 98.0 1.4E-05 4.9E-10 77.0 9.5 113 309-429 249-365 (365)
114 2ho1_A Type 4 fimbrial biogene 98.0 0.0001 3.5E-09 66.7 14.6 95 312-420 76-170 (252)
115 2ho1_A Type 4 fimbrial biogene 98.0 8.4E-05 2.9E-09 67.3 14.0 114 307-442 37-150 (252)
116 2vq2_A PILW, putative fimbrial 98.0 0.00015 5E-09 64.0 15.2 95 312-420 47-142 (225)
117 1xnf_A Lipoprotein NLPI; TPR, 98.0 5.4E-05 1.8E-09 69.4 12.4 103 307-430 43-145 (275)
118 2fo7_A Synthetic consensus TPR 98.0 0.00017 5.8E-09 57.6 13.9 92 313-420 7-98 (136)
119 3urz_A Uncharacterized protein 98.0 0.00012 4E-09 65.0 13.6 115 313-446 60-206 (208)
120 2vq2_A PILW, putative fimbrial 98.0 0.00017 5.7E-09 63.6 14.6 94 313-420 82-176 (225)
121 3ma5_A Tetratricopeptide repea 98.0 3.8E-05 1.3E-09 59.5 9.1 70 346-423 4-73 (100)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.0 5.9E-05 2E-09 66.5 11.5 97 307-422 6-102 (213)
123 3hym_B Cell division cycle pro 98.0 8.5E-05 2.9E-09 69.8 13.2 100 313-420 165-265 (330)
124 3qou_A Protein YBBN; thioredox 97.9 0.00016 5.6E-09 67.7 15.0 104 308-420 118-248 (287)
125 3as5_A MAMA; tetratricopeptide 97.9 0.00017 5.7E-09 61.3 13.9 94 311-420 46-139 (186)
126 4abn_A Tetratricopeptide repea 97.9 9.3E-05 3.2E-09 74.8 13.9 106 310-433 173-295 (474)
127 3ieg_A DNAJ homolog subfamily 97.9 0.00013 4.3E-09 69.4 14.1 98 307-420 3-100 (359)
128 1zu2_A Mitochondrial import re 97.9 4.2E-05 1.5E-09 64.6 9.4 100 322-442 17-137 (158)
129 4gco_A Protein STI-1; structur 97.9 6.3E-05 2.2E-09 61.1 10.2 75 344-431 8-82 (126)
130 2y4t_A DNAJ homolog subfamily 97.9 0.00024 8.2E-09 70.2 16.4 117 309-443 259-376 (450)
131 3u4t_A TPR repeat-containing p 97.9 6.8E-05 2.3E-09 68.7 11.5 98 310-420 6-103 (272)
132 3mkr_A Coatomer subunit epsilo 97.9 9.7E-05 3.3E-09 69.5 12.7 104 319-443 178-282 (291)
133 2fo7_A Synthetic consensus TPR 97.9 0.00015 5E-09 57.9 12.1 93 312-420 40-132 (136)
134 2q7f_A YRRB protein; TPR, prot 97.9 0.0001 3.5E-09 66.1 12.1 110 311-441 129-238 (243)
135 2vsy_A XCC0866; transferase, g 97.8 0.00013 4.3E-09 75.4 13.3 96 309-420 25-120 (568)
136 3hym_B Cell division cycle pro 97.8 0.0001 3.5E-09 69.3 11.6 114 310-436 196-310 (330)
137 3vtx_A MAMA; tetratricopeptide 97.8 0.00025 8.6E-09 60.9 13.2 119 311-446 9-154 (184)
138 1w3b_A UDP-N-acetylglucosamine 97.8 0.00017 5.8E-09 70.1 13.5 94 311-420 275-368 (388)
139 3cv0_A Peroxisome targeting si 97.8 0.00034 1.2E-08 65.5 15.1 119 310-444 175-297 (327)
140 3cv0_A Peroxisome targeting si 97.8 7.9E-05 2.7E-09 70.0 10.5 114 309-430 208-325 (327)
141 3as5_A MAMA; tetratricopeptide 97.8 0.00018 6.1E-09 61.1 11.9 95 311-421 80-174 (186)
142 2l6j_A TPR repeat-containing p 97.8 1.9E-05 6.4E-10 61.7 4.8 97 307-415 4-102 (111)
143 3db5_A PR domain zinc finger p 97.8 1.9E-05 6.5E-10 66.4 5.1 45 182-226 97-144 (151)
144 1wao_1 Serine/threonine protei 97.8 1.4E-05 4.9E-10 80.9 4.9 110 307-432 40-162 (477)
145 2r5s_A Uncharacterized protein 97.8 8.1E-05 2.8E-09 64.0 9.1 103 310-420 9-137 (176)
146 2q7f_A YRRB protein; TPR, prot 97.8 0.00045 1.5E-08 61.8 14.5 94 311-420 95-188 (243)
147 1na3_A Designed protein CTPR2; 97.8 0.00023 7.9E-09 53.1 10.6 72 348-432 8-79 (91)
148 4abn_A Tetratricopeptide repea 97.8 0.00018 6.3E-09 72.5 13.0 96 308-420 103-208 (474)
149 2l6j_A TPR repeat-containing p 97.7 0.00026 8.9E-09 55.0 10.6 86 349-447 4-92 (111)
150 4b4t_Q 26S proteasome regulato 97.7 0.0011 3.9E-08 65.1 17.2 117 311-430 139-255 (434)
151 2h6f_A Protein farnesyltransfe 97.7 0.00019 6.4E-09 70.4 11.3 61 351-419 168-228 (382)
152 4b4t_Q 26S proteasome regulato 97.7 0.00051 1.7E-08 67.6 14.4 128 309-442 57-184 (434)
153 1xnf_A Lipoprotein NLPI; TPR, 97.7 0.00017 5.9E-09 65.9 10.3 91 318-420 16-106 (275)
154 1w3b_A UDP-N-acetylglucosamine 97.7 0.00044 1.5E-08 67.1 13.7 61 351-419 273-333 (388)
155 3ep0_A PR domain zinc finger p 97.7 4E-05 1.4E-09 65.5 5.1 45 182-226 101-148 (170)
156 2gw1_A Mitochondrial precursor 97.6 0.00035 1.2E-08 70.1 12.7 99 306-421 5-103 (514)
157 2h6f_A Protein farnesyltransfe 97.6 0.00014 4.8E-09 71.3 9.4 92 313-420 172-269 (382)
158 2xev_A YBGF; tetratricopeptide 97.6 0.00029 1E-08 56.4 9.8 84 352-445 5-88 (129)
159 3gyz_A Chaperone protein IPGC; 97.6 0.00017 6E-09 60.7 8.3 75 345-432 32-106 (151)
160 2y4t_A DNAJ homolog subfamily 97.6 0.00043 1.5E-08 68.4 12.5 98 307-420 26-123 (450)
161 1a17_A Serine/threonine protei 97.6 0.00067 2.3E-08 56.6 12.0 101 309-423 49-149 (166)
162 3u4t_A TPR repeat-containing p 97.6 0.00034 1.2E-08 64.0 10.8 94 311-420 78-171 (272)
163 2xpi_A Anaphase-promoting comp 97.6 0.00073 2.5E-08 69.4 14.5 112 310-436 478-590 (597)
164 2vgx_A Chaperone SYCD; alterna 97.6 0.00016 5.4E-09 60.5 7.5 75 345-432 17-91 (148)
165 2xpi_A Anaphase-promoting comp 97.5 0.0011 3.9E-08 68.0 14.9 105 314-433 448-553 (597)
166 2vsy_A XCC0866; transferase, g 97.5 0.00063 2.2E-08 70.1 12.5 98 309-422 59-159 (568)
167 3mkr_A Coatomer subunit epsilo 97.5 0.00088 3E-08 62.8 12.3 102 312-432 135-236 (291)
168 3rkv_A Putative peptidylprolyl 97.5 0.00061 2.1E-08 57.4 10.0 74 347-420 9-92 (162)
169 3upv_A Heat shock protein STI1 97.5 0.00081 2.8E-08 53.8 10.3 64 349-420 4-67 (126)
170 2e2e_A Formate-dependent nitri 97.4 0.0004 1.4E-08 59.3 8.6 95 317-432 20-117 (177)
171 2hr2_A Hypothetical protein; a 97.4 0.0012 4E-08 55.8 11.1 75 349-424 11-90 (159)
172 1na3_A Designed protein CTPR2; 97.4 0.0014 4.7E-08 48.6 10.6 81 309-405 11-91 (91)
173 3dal_A PR domain zinc finger p 97.4 0.00012 4E-09 64.0 4.6 44 182-225 131-177 (196)
174 2v5f_A Prolyl 4-hydroxylase su 97.4 0.0021 7.3E-08 50.0 11.7 84 352-441 8-91 (104)
175 1p5q_A FKBP52, FK506-binding p 97.4 0.0011 3.9E-08 63.4 12.2 101 307-423 196-297 (336)
176 1elr_A TPR2A-domain of HOP; HO 97.4 0.0012 3.9E-08 52.4 10.4 87 349-444 4-90 (131)
177 2gw1_A Mitochondrial precursor 97.4 0.0021 7.3E-08 64.3 14.4 117 310-441 375-494 (514)
178 3sz7_A HSC70 cochaperone (SGT) 97.4 0.0012 4E-08 55.7 10.6 68 345-420 7-74 (164)
179 3fp2_A TPR repeat-containing p 97.4 0.00077 2.6E-08 68.1 11.1 94 306-415 24-117 (537)
180 2xcb_A PCRH, regulatory protei 97.4 0.0013 4.4E-08 54.1 10.3 75 345-432 14-88 (142)
181 2pzi_A Probable serine/threoni 97.3 0.00063 2.2E-08 71.9 9.8 94 309-419 435-528 (681)
182 2kc7_A BFR218_protein; tetratr 97.3 0.0018 6.1E-08 49.2 9.9 68 354-433 5-72 (99)
183 2lni_A Stress-induced-phosphop 97.3 0.0016 5.4E-08 51.9 10.0 71 342-420 9-79 (133)
184 1hxi_A PEX5, peroxisome target 97.3 0.0024 8.4E-08 51.0 11.0 69 352-433 20-88 (121)
185 1ouv_A Conserved hypothetical 97.3 0.0021 7.3E-08 58.9 12.2 80 320-419 55-142 (273)
186 3fp2_A TPR repeat-containing p 97.3 0.0023 7.7E-08 64.6 13.2 94 311-420 280-373 (537)
187 2dba_A Smooth muscle cell asso 97.3 0.0019 6.4E-08 52.7 10.3 70 346-420 25-94 (148)
188 2pzi_A Probable serine/threoni 97.2 0.00048 1.7E-08 72.8 7.8 95 318-420 402-496 (681)
189 3q49_B STIP1 homology and U bo 97.2 0.0023 7.9E-08 51.6 9.9 67 346-420 6-72 (137)
190 3ihx_A PR domain zinc finger p 97.2 0.00028 9.6E-09 59.1 4.0 44 182-225 96-142 (152)
191 4f3v_A ESX-1 secretion system 97.1 0.0058 2E-07 56.7 12.6 97 311-420 139-237 (282)
192 2kck_A TPR repeat; tetratricop 97.0 0.0012 4.1E-08 50.8 6.6 62 351-420 8-69 (112)
193 2vyi_A SGTA protein; chaperone 97.0 0.0045 1.5E-07 48.7 10.1 68 345-420 8-75 (131)
194 1ouv_A Conserved hypothetical 97.0 0.0055 1.9E-07 56.0 12.0 89 312-420 79-179 (273)
195 3qou_A Protein YBBN; thioredox 97.0 0.0023 7.7E-08 59.8 9.3 71 345-421 215-285 (287)
196 4f3v_A ESX-1 secretion system 97.0 0.0046 1.6E-07 57.4 11.2 90 314-419 109-199 (282)
197 1na0_A Designed protein CTPR3; 97.0 0.0053 1.8E-07 47.8 9.8 64 349-420 9-72 (125)
198 1elw_A TPR1-domain of HOP; HOP 96.9 0.006 2.1E-07 47.0 10.0 64 349-420 4-67 (118)
199 3ray_A PR domain-containing pr 96.9 0.00073 2.5E-08 60.3 4.6 44 182-225 140-186 (237)
200 2r5s_A Uncharacterized protein 96.9 0.0041 1.4E-07 53.1 9.0 67 348-420 107-173 (176)
201 2kc7_A BFR218_protein; tetratr 96.8 0.0027 9.3E-08 48.1 6.9 59 312-378 5-64 (99)
202 3k9i_A BH0479 protein; putativ 96.8 0.0019 6.4E-08 51.1 6.2 62 361-432 2-63 (117)
203 2c2l_A CHIP, carboxy terminus 96.7 0.004 1.4E-07 57.8 8.6 64 349-420 4-67 (281)
204 1pc2_A Mitochondria fission pr 96.7 0.022 7.4E-07 47.5 11.9 87 347-445 30-120 (152)
205 1kt0_A FKBP51, 51 kDa FK506-bi 96.7 0.0054 1.8E-07 61.4 9.9 90 308-413 318-407 (457)
206 3ma5_A Tetratricopeptide repea 96.7 0.0071 2.4E-07 46.3 8.4 63 310-380 10-72 (100)
207 2fbn_A 70 kDa peptidylprolyl i 96.7 0.0052 1.8E-07 53.4 8.5 89 308-412 89-177 (198)
208 1ihg_A Cyclophilin 40; ppiase 96.6 0.0071 2.4E-07 58.7 9.7 72 349-420 223-302 (370)
209 2ond_A Cleavage stimulation fa 96.6 0.018 6E-07 54.0 12.1 83 324-420 81-163 (308)
210 3rjv_A Putative SEL1 repeat pr 96.5 0.0093 3.2E-07 52.7 9.1 31 389-419 123-157 (212)
211 3bee_A Putative YFRE protein; 96.5 0.017 5.9E-07 43.8 9.2 82 350-444 7-91 (93)
212 2ff4_A Probable regulatory pro 96.3 0.049 1.7E-06 53.2 13.7 126 306-439 114-254 (388)
213 2if4_A ATFKBP42; FKBP-like, al 96.3 0.0072 2.5E-07 57.8 7.5 95 309-419 232-327 (338)
214 3rjv_A Putative SEL1 repeat pr 96.3 0.035 1.2E-06 48.9 11.5 64 348-420 124-197 (212)
215 3ffl_A Anaphase-promoting comp 96.2 0.067 2.3E-06 44.9 11.9 103 312-416 25-147 (167)
216 1klx_A Cysteine rich protein B 96.0 0.053 1.8E-06 44.2 10.3 85 316-420 34-126 (138)
217 2kat_A Uncharacterized protein 95.9 0.038 1.3E-06 43.0 8.8 64 309-380 21-84 (115)
218 2v5f_A Prolyl 4-hydroxylase su 95.8 0.2 7E-06 38.3 12.3 74 311-390 9-82 (104)
219 3mv2_B Coatomer subunit epsilo 95.5 0.12 4.1E-06 48.5 11.6 108 314-440 183-297 (310)
220 2ond_A Cleavage stimulation fa 95.4 0.087 3E-06 49.1 10.6 92 320-423 182-273 (308)
221 3txn_A 26S proteasome regulato 95.2 0.3 1E-05 47.4 14.0 107 312-422 104-212 (394)
222 2yqq_A Zinc finger HIT domain- 94.9 0.028 9.5E-07 37.8 3.9 37 27-69 12-48 (56)
223 3bee_A Putative YFRE protein; 94.6 0.35 1.2E-05 36.3 10.2 64 323-399 25-88 (93)
224 2ooe_A Cleavage stimulation fa 94.5 0.16 5.4E-06 51.4 10.3 87 320-420 292-385 (530)
225 1zu2_A Mitochondrial import re 94.4 0.064 2.2E-06 45.0 5.9 49 323-379 62-121 (158)
226 1nzn_A CGI-135 protein, fissio 94.4 0.76 2.6E-05 36.7 11.9 88 347-443 33-121 (126)
227 1x4s_A Protein FON, zinc finge 94.4 0.014 4.8E-07 39.5 1.5 36 27-68 11-49 (59)
228 2xm6_A Protein corresponding t 94.4 0.29 9.9E-06 48.8 12.0 80 320-419 92-179 (490)
229 2xm6_A Protein corresponding t 94.4 0.32 1.1E-05 48.5 12.2 94 307-420 39-144 (490)
230 1klx_A Cysteine rich protein B 93.6 0.2 6.8E-06 40.6 7.4 77 322-420 10-90 (138)
231 3e4b_A ALGK; tetratricopeptide 93.1 0.39 1.3E-05 47.5 10.0 78 322-418 194-278 (452)
232 3u64_A Protein TP_0956; tetrat 93.0 0.4 1.4E-05 44.3 9.1 96 324-433 180-281 (301)
233 1xi4_A Clathrin heavy chain; a 93.0 0.33 1.1E-05 54.5 9.9 94 311-420 1199-1309(1630)
234 1xi4_A Clathrin heavy chain; a 92.8 0.46 1.6E-05 53.3 10.6 95 314-421 1056-1164(1630)
235 1b89_A Protein (clathrin heavy 92.6 0.21 7.3E-06 49.2 7.0 92 304-420 145-236 (449)
236 2o8p_A 14-3-3 domain containin 92.5 1 3.6E-05 39.7 10.7 61 362-422 138-199 (227)
237 3re2_A Predicted protein; meni 92.2 1.6 5.6E-05 40.9 11.8 76 367-448 275-351 (472)
238 1pc2_A Mitochondria fission pr 92.2 1.6 5.4E-05 36.1 10.8 72 308-391 33-108 (152)
239 4b4t_R RPN7, 26S proteasome re 91.8 1.6 5.5E-05 42.9 12.5 103 311-421 135-238 (429)
240 2ooe_A Cleavage stimulation fa 91.5 0.74 2.5E-05 46.3 10.0 81 325-420 256-350 (530)
241 3ly7_A Transcriptional activat 91.5 0.41 1.4E-05 45.9 7.4 63 349-420 277-339 (372)
242 3o48_A Mitochondria fission 1 91.4 3.3 0.00011 33.2 11.5 84 348-444 39-126 (134)
243 1b89_A Protein (clathrin heavy 91.1 0.49 1.7E-05 46.6 7.7 103 312-444 127-252 (449)
244 3ffl_A Anaphase-promoting comp 91.1 1.3 4.6E-05 37.0 9.2 70 305-374 61-147 (167)
245 4gq4_A Menin; tumor suppressor 90.7 2.5 8.5E-05 40.5 11.6 67 367-436 282-350 (489)
246 1y8m_A FIS1; mitochondria, unk 90.6 4.4 0.00015 32.9 11.7 84 347-443 37-124 (144)
247 3e4b_A ALGK; tetratricopeptide 90.6 1.9 6.4E-05 42.5 11.8 92 312-418 146-244 (452)
248 3uzd_A 14-3-3 protein gamma; s 90.3 5.6 0.00019 35.6 13.1 80 366-447 148-231 (248)
249 3u84_A Menin; MLL, JUND, ledgf 90.0 3.5 0.00012 39.4 11.9 68 367-437 297-366 (550)
250 3iqu_A 14-3-3 protein sigma; s 89.9 2.1 7.2E-05 38.0 10.0 79 366-446 150-232 (236)
251 3mv2_B Coatomer subunit epsilo 89.8 1.4 4.7E-05 41.2 9.3 97 313-419 142-239 (310)
252 2br9_A 14-3-3E, 14-3-3 protein 89.5 2.4 8.4E-05 37.7 10.2 79 366-446 147-229 (234)
253 3efz_A 14-3-3 protein; 14-3-3, 88.7 6.2 0.00021 35.6 12.3 55 366-420 169-226 (268)
254 3ubw_A 14-3-3E, 14-3-3 protein 88.1 3.5 0.00012 37.1 10.2 80 366-447 173-256 (261)
255 3txn_A 26S proteasome regulato 88.0 17 0.00057 35.1 15.8 80 352-435 102-181 (394)
256 4b4t_P 26S proteasome regulato 87.2 8.8 0.0003 37.7 13.7 103 314-421 144-248 (445)
257 1o9d_A 14-3-3-like protein C; 87.2 2.9 0.0001 37.7 9.2 79 366-446 152-234 (260)
258 4g26_A Pentatricopeptide repea 85.8 5 0.00017 40.2 11.2 89 317-419 115-203 (501)
259 2npm_A 14-3-3 domain containin 85.3 5.4 0.00019 36.0 9.9 79 366-447 173-255 (260)
260 1dce_A Protein (RAB geranylger 84.7 4.3 0.00015 41.4 10.3 91 314-420 114-221 (567)
261 3dra_A Protein farnesyltransfe 83.9 7.7 0.00026 36.0 10.9 106 298-422 30-141 (306)
262 4h7y_A Dual specificity protei 83.7 15 0.0005 30.3 10.9 85 324-419 36-122 (161)
263 1dce_A Protein (RAB geranylger 83.4 9.1 0.00031 38.9 12.1 89 317-421 38-139 (567)
264 1nzn_A CGI-135 protein, fissio 83.0 6.6 0.00022 31.2 8.5 66 309-378 37-103 (126)
265 2v6y_A AAA family ATPase, P60 82.1 5.7 0.0002 28.9 7.3 57 390-446 10-68 (83)
266 1ya0_A SMG-7 transcript varian 80.9 3 0.0001 41.8 7.1 61 351-419 154-214 (497)
267 2w2u_A Hypothetical P60 katani 80.7 6.7 0.00023 28.6 7.2 57 391-447 19-77 (83)
268 3lpz_A GET4 (YOR164C homolog); 80.5 28 0.00095 32.7 13.1 27 385-414 133-159 (336)
269 2wpv_A GET4, UPF0363 protein Y 79.9 35 0.0012 31.6 13.6 22 394-415 137-158 (312)
270 3mkq_A Coatomer beta'-subunit; 78.4 9 0.00031 40.2 10.5 92 350-442 682-792 (814)
271 3o48_A Mitochondria fission 1 78.3 7.7 0.00026 31.1 7.3 63 308-377 41-106 (134)
272 2ff4_A Probable regulatory pro 77.4 17 0.00058 34.9 11.2 77 310-394 174-251 (388)
273 4g26_A Pentatricopeptide repea 76.5 28 0.00097 34.6 12.9 63 350-419 106-168 (501)
274 3ly7_A Transcriptional activat 75.9 12 0.00042 35.7 9.4 33 388-420 274-306 (372)
275 4b4t_S RPN3, 26S proteasome re 75.8 6.4 0.00022 39.3 7.6 77 337-419 219-298 (523)
276 1y8m_A FIS1; mitochondria, unk 75.6 6.4 0.00022 32.0 6.2 70 309-390 41-113 (144)
277 3q7a_A Farnesyltransferase alp 75.5 27 0.00091 33.0 11.7 101 298-420 51-154 (349)
278 3dra_A Protein farnesyltransfe 73.2 20 0.00068 33.2 10.1 94 314-420 74-175 (306)
279 2yrc_A Protein transport prote 71.9 1.3 4.4E-05 30.1 1.1 30 265-294 9-42 (59)
280 1lv3_A Hypothetical protein YA 71.5 1.7 5.9E-05 30.3 1.6 30 28-59 10-39 (68)
281 3spa_A Mtrpol, DNA-directed RN 70.9 38 0.0013 36.9 12.5 92 315-417 135-227 (1134)
282 1wfd_A Hypothetical protein 15 70.3 21 0.00072 26.5 7.7 35 305-339 13-47 (93)
283 3dss_A Geranylgeranyl transfer 69.1 45 0.0015 31.2 11.5 101 307-420 29-139 (331)
284 1pft_A TFIIB, PFTFIIBN; N-term 68.5 2.6 8.7E-05 27.4 2.0 30 265-296 5-35 (50)
285 2o8p_A 14-3-3 domain containin 67.6 15 0.00051 32.3 7.2 63 318-380 136-199 (227)
286 3u64_A Protein TP_0956; tetrat 67.4 5.8 0.0002 36.5 4.8 52 365-422 179-235 (301)
287 1wfd_A Hypothetical protein 15 67.1 20 0.0007 26.6 7.0 36 390-425 14-49 (93)
288 4e6h_A MRNA 3'-END-processing 66.1 31 0.0011 35.9 10.6 94 319-420 355-463 (679)
289 2v6x_A Vacuolar protein sortin 64.4 22 0.00076 25.8 6.7 37 388-424 10-46 (85)
290 4a5x_A MITD1, MIT domain-conta 63.9 27 0.00093 25.5 7.0 53 390-442 15-69 (86)
291 3o10_A Sacsin; all-helical dom 63.7 56 0.0019 26.2 10.2 35 295-329 4-38 (141)
292 2br9_A 14-3-3E, 14-3-3 protein 61.7 19 0.00064 31.9 6.8 54 324-377 147-201 (234)
293 1zbp_A Hypothetical protein VP 61.7 68 0.0023 29.0 10.6 52 316-375 6-57 (273)
294 1vq8_Z 50S ribosomal protein L 61.5 1.6 5.5E-05 31.9 -0.1 29 265-295 27-55 (83)
295 4gns_B Protein CSD3, chitin bi 61.4 30 0.001 36.4 9.4 56 311-374 341-396 (754)
296 1dl6_A Transcription factor II 61.2 3.1 0.0001 28.1 1.3 35 260-296 6-41 (58)
297 3dss_A Geranylgeranyl transfer 59.6 43 0.0015 31.3 9.4 82 322-419 125-221 (331)
298 4e6h_A MRNA 3'-END-processing 58.9 97 0.0033 32.1 12.8 97 317-420 388-499 (679)
299 3spa_A Mtrpol, DNA-directed RN 58.7 28 0.00096 38.0 8.7 70 345-418 123-192 (1134)
300 3uzd_A 14-3-3 protein gamma; s 58.4 23 0.00079 31.6 6.8 55 324-378 148-203 (248)
301 3ubw_A 14-3-3E, 14-3-3 protein 57.9 24 0.00081 31.7 6.8 55 324-378 173-228 (261)
302 3iqu_A 14-3-3 protein sigma; s 57.6 24 0.00084 31.2 6.8 54 324-377 150-204 (236)
303 2cpt_A SKD1 protein, vacuolar 57.0 22 0.00076 27.7 5.8 37 389-425 16-52 (117)
304 2npm_A 14-3-3 domain containin 55.7 28 0.00097 31.3 7.0 53 324-377 173-226 (260)
305 4gns_B Protein CSD3, chitin bi 55.1 32 0.0011 36.2 8.4 58 351-416 339-396 (754)
306 1o9d_A 14-3-3-like protein C; 55.1 28 0.00094 31.3 6.8 54 324-377 152-206 (260)
307 1gh9_A 8.3 kDa protein (gene M 55.0 1.5 5.1E-05 31.0 -1.2 48 265-330 4-51 (71)
308 1om2_A Protein (mitochondrial 54.7 19 0.00066 26.8 4.8 54 396-451 25-88 (95)
309 4b4t_O 26S proteasome regulato 54.2 1.3E+02 0.0043 28.7 12.0 95 319-413 88-191 (393)
310 3t5v_B Nuclear mRNA export pro 52.1 62 0.0021 31.7 9.4 72 347-420 174-249 (455)
311 1wfp_A Zinc finger (AN1-like) 50.9 11 0.00038 26.6 2.7 27 25-53 23-51 (74)
312 2a9u_A Ubiquitin carboxyl-term 50.8 63 0.0022 26.1 7.7 44 389-434 40-83 (144)
313 1wfh_A Zinc finger (AN1-like) 49.8 11 0.00038 25.8 2.5 27 25-53 13-41 (64)
314 3mkq_B Coatomer subunit alpha; 49.6 91 0.0031 26.1 8.8 99 318-429 16-132 (177)
315 3efz_A 14-3-3 protein; 14-3-3, 47.6 36 0.0012 30.7 6.3 55 324-378 169-226 (268)
316 2cwy_A Hypothetical protein TT 47.4 35 0.0012 25.4 5.3 80 357-444 9-90 (94)
317 2pk7_A Uncharacterized protein 47.2 10 0.00035 26.5 2.1 33 261-295 4-36 (69)
318 2ijq_A Hypothetical protein; s 46.0 1.1E+02 0.0038 25.1 8.6 65 357-425 40-109 (161)
319 1wg2_A Zinc finger (AN1-like) 45.4 12 0.00042 25.6 2.2 26 26-53 14-41 (64)
320 3q7a_A Farnesyltransferase alp 45.4 84 0.0029 29.5 8.9 86 318-419 99-195 (349)
321 3k1s_A PTS system, cellobiose- 45.2 1E+02 0.0034 23.6 8.3 70 306-382 21-105 (109)
322 2crb_A Nuclear receptor bindin 45.0 71 0.0024 23.6 6.3 50 386-435 9-60 (97)
323 4b4t_P 26S proteasome regulato 45.0 84 0.0029 30.6 9.2 69 348-419 136-205 (445)
324 2dl1_A Spartin; SPG20, MIT, st 44.8 1.1E+02 0.0036 23.7 8.6 44 364-423 18-61 (116)
325 1wff_A Riken cDNA 2810002D23 p 43.2 16 0.00054 26.6 2.6 26 26-53 24-52 (85)
326 2xze_A STAM-binding protein; h 42.4 44 0.0015 27.1 5.6 43 390-433 39-81 (146)
327 2w2u_A Hypothetical P60 katani 42.1 53 0.0018 23.7 5.4 37 303-339 15-51 (83)
328 2cpt_A SKD1 protein, vacuolar 41.8 1.1E+02 0.0036 23.7 7.5 37 305-341 16-52 (117)
329 2jny_A Uncharacterized BCR; st 39.5 12 0.00042 26.0 1.5 32 261-294 6-37 (67)
330 4b4t_R RPN7, 26S proteasome re 39.2 59 0.002 31.5 7.1 71 348-423 130-200 (429)
331 3uej_A NPKC-delta, protein kin 38.8 16 0.00054 25.0 2.0 41 16-58 9-54 (65)
332 1wvo_A Sialic acid synthase; a 38.4 13 0.00044 26.8 1.5 18 204-221 8-25 (79)
333 2jmo_A Parkin; IBR, E3 ligase, 38.2 22 0.00076 25.5 2.9 30 265-294 25-59 (80)
334 4b4t_O 26S proteasome regulato 38.0 1.8E+02 0.0062 27.6 10.3 74 356-429 83-165 (393)
335 2dl1_A Spartin; SPG20, MIT, st 37.9 1.4E+02 0.0047 23.1 8.6 39 297-335 12-50 (116)
336 3mkq_B Coatomer subunit alpha; 37.8 45 0.0015 28.0 5.1 51 357-420 13-63 (177)
337 1wfl_A Zinc finger protein 216 37.7 17 0.00059 25.6 2.0 26 26-53 24-51 (74)
338 2rpa_A Katanin P60 ATPase-cont 37.0 72 0.0025 22.8 5.3 33 394-426 15-47 (78)
339 2l8e_A Polyhomeotic-like prote 36.8 18 0.00062 23.3 1.9 30 27-58 18-47 (49)
340 3na7_A HP0958; flagellar bioge 36.3 14 0.00047 33.3 1.8 25 27-51 198-234 (256)
341 2jr6_A UPF0434 protein NMA0874 35.9 12 0.0004 26.1 1.0 31 262-294 5-35 (68)
342 2con_A RUH-035 protein, NIN on 35.5 17 0.00057 26.2 1.7 22 26-47 14-38 (79)
343 2v6y_A AAA family ATPase, P60 35.5 66 0.0023 23.1 5.1 36 304-339 8-43 (83)
344 2js4_A UPF0434 protein BB2007; 35.4 12 0.0004 26.3 0.9 32 262-295 5-36 (70)
345 2hf1_A Tetraacyldisaccharide-1 34.8 11 0.00038 26.2 0.7 32 262-295 5-36 (68)
346 3nw0_B Melanoma-associated ant 34.2 76 0.0026 27.6 6.1 56 385-442 94-150 (217)
347 3j21_g 50S ribosomal protein L 32.7 16 0.00054 23.8 1.1 27 262-294 11-37 (51)
348 3l8r_A PTCA, putative PTS syst 32.6 1.7E+02 0.006 22.7 7.4 68 306-380 36-118 (120)
349 2yuu_A NPKC-delta, protein kin 32.6 20 0.00069 25.9 1.8 46 11-58 12-62 (83)
350 4a1g_A Mitotic checkpoint seri 32.2 2E+02 0.007 23.3 9.3 30 390-419 100-129 (152)
351 3j20_Y 30S ribosomal protein S 31.8 15 0.00051 23.8 0.9 26 267-294 21-46 (50)
352 1x4w_A Hypothetical protein FL 31.3 27 0.00094 24.1 2.2 26 26-53 14-44 (67)
353 3j21_V 50S ribosomal protein L 31.2 27 0.00093 24.1 2.2 32 27-58 4-40 (66)
354 1twf_L ABC10-alpha, DNA-direct 31.0 25 0.00084 24.6 2.0 26 25-50 26-57 (70)
355 3mzk_B Protein transport prote 30.7 2.3E+02 0.0077 27.6 9.5 61 387-448 352-412 (441)
356 4a5x_A MITD1, MIT domain-conta 30.2 1.5E+02 0.0053 21.3 7.5 34 306-339 15-48 (86)
357 2crb_A Nuclear receptor bindin 30.0 1.7E+02 0.0057 21.6 6.3 44 347-390 13-57 (97)
358 3ax2_A Mitochondrial import re 29.7 50 0.0017 23.3 3.4 26 395-420 21-46 (73)
359 2e2a_A Protein (enzyme IIA); h 29.4 1.8E+02 0.0063 21.9 8.9 69 306-381 19-102 (105)
360 2fnf_X Putative RAS effector N 29.2 37 0.0013 23.7 2.7 32 25-58 33-66 (72)
361 4ayb_P DNA-directed RNA polyme 28.7 33 0.0011 21.8 2.0 19 29-47 5-31 (48)
362 3mkq_A Coatomer beta'-subunit; 28.7 1.2E+02 0.004 31.5 7.8 53 357-410 744-802 (814)
363 3mkr_B Coatomer subunit alpha; 28.5 3.5E+02 0.012 24.9 10.5 92 355-446 22-157 (320)
364 1brv_A Protein G, BRSV-G regio 28.1 19 0.00065 20.7 0.8 21 37-57 11-31 (32)
365 2rpa_A Katanin P60 ATPase-cont 28.0 45 0.0015 23.8 3.0 37 354-390 17-54 (78)
366 2wb7_A PT26-6P; extra chromoso 27.4 1.5E+02 0.0052 29.1 7.4 42 366-407 449-490 (526)
367 3ga8_A HTH-type transcriptiona 27.1 65 0.0022 22.7 3.8 30 284-313 35-65 (78)
368 1m2o_A SEC23, protein transpor 26.8 26 0.00088 37.1 2.2 30 266-295 54-87 (768)
369 2vkj_A TM1634; membrane protei 26.7 1.2E+02 0.004 22.2 4.9 33 305-337 51-83 (106)
370 1ptq_A Protein kinase C delta 26.4 33 0.0011 21.7 1.9 32 25-58 9-45 (50)
371 3myv_A SUSD superfamily protei 26.2 1.2E+02 0.0042 29.4 6.9 34 345-378 186-219 (454)
372 1wys_A Riken cDNA 2310008M20 p 25.5 40 0.0014 23.9 2.3 42 25-72 12-56 (75)
373 2nut_A Protein transport prote 25.3 28 0.00094 36.8 2.0 29 266-294 63-95 (769)
374 2row_A RHO-associated protein 24.8 58 0.002 23.6 3.1 42 15-58 23-71 (84)
375 3t5x_A PCI domain-containing p 24.6 77 0.0026 27.1 4.5 34 389-422 12-45 (203)
376 4b6d_A RAC GTPase-activating p 24.6 19 0.00064 24.4 0.4 31 26-58 18-52 (61)
377 1wy6_A Hypothetical protein ST 24.5 2.2E+02 0.0075 23.0 6.6 41 378-419 113-153 (172)
378 3kez_A Putative sugar binding 24.4 1.3E+02 0.0046 29.2 6.8 55 323-377 170-224 (461)
379 3jyw_9 60S ribosomal protein L 24.4 53 0.0018 23.0 2.7 30 265-296 26-55 (72)
380 1y02_A CARP2, FYVE-ring finger 24.1 31 0.0011 27.0 1.7 36 20-57 12-51 (120)
381 3lpz_A GET4 (YOR164C homolog); 24.0 2.6E+02 0.0089 26.0 8.2 65 315-381 20-87 (336)
382 2k4x_A 30S ribosomal protein S 24.0 27 0.00092 23.1 1.1 28 265-294 18-45 (55)
383 4aez_C MAD3, mitotic spindle c 23.8 3.6E+02 0.012 23.4 9.4 49 390-445 149-197 (223)
384 1rfh_A RAS association (ralgds 23.8 50 0.0017 21.9 2.5 32 24-57 19-52 (59)
385 3h0g_L DNA-directed RNA polyme 23.5 56 0.0019 22.3 2.6 24 24-47 18-46 (63)
386 2ra1_A Surface layer protein; 22.4 5E+02 0.017 24.6 14.7 58 388-448 170-227 (412)
387 2v6x_A Vacuolar protein sortin 22.2 2.2E+02 0.0074 20.3 7.0 34 306-339 12-45 (85)
388 2xze_A STAM-binding protein; h 22.0 93 0.0032 25.1 4.2 39 351-390 42-80 (146)
389 1wy6_A Hypothetical protein ST 21.7 1.6E+02 0.0054 23.9 5.2 51 317-375 101-151 (172)
390 4a17_T RPL24, 60S ribosomal pr 21.7 40 0.0014 27.6 1.8 32 27-58 5-41 (158)
391 2wpv_A GET4, UPF0363 protein Y 21.5 3.7E+02 0.013 24.6 8.7 65 315-381 21-85 (312)
392 1orj_A Flagellar protein FLIS; 21.5 3E+02 0.01 21.6 7.0 50 397-446 35-93 (130)
393 2wa0_A Melanoma-associated ant 21.4 72 0.0025 28.2 3.6 53 385-439 118-170 (240)
394 3r9m_A BRO1 domain-containing 21.3 1.8E+02 0.0061 27.5 6.8 36 388-423 250-285 (376)
395 2enz_A NPKC-theta, protein kin 21.2 38 0.0013 23.0 1.5 38 19-58 15-57 (65)
396 1x4v_A Hypothetical protein LO 21.2 56 0.0019 22.3 2.2 27 26-53 11-40 (63)
397 1vh6_A Flagellar protein FLIS; 21.1 2.4E+02 0.0082 22.6 6.5 84 300-384 26-122 (145)
398 3iz5_Z 60S ribosomal protein L 21.1 41 0.0014 27.6 1.8 32 27-58 5-41 (162)
399 1pg5_B Aspartate carbamoyltran 20.9 40 0.0014 27.9 1.7 37 265-301 114-159 (168)
400 2wm9_A Dedicator of cytokinesi 20.7 4E+02 0.014 25.5 9.3 51 351-403 90-140 (428)
401 1y8f_A UNC-13 homolog A, MUNC1 20.7 40 0.0014 23.0 1.5 32 25-58 22-58 (66)
402 3eab_A Spastin; spastin, MIT, 20.5 2.5E+02 0.0087 20.4 6.5 70 364-446 12-81 (89)
403 4ady_A RPN2, 26S proteasome re 20.1 2.3E+02 0.008 30.5 7.8 62 385-448 64-125 (963)
No 1
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=100.00 E-value=2.1e-76 Score=593.27 Aligned_cols=405 Identities=24% Similarity=0.494 Sum_probs=345.3
Q ss_pred CCCCCCCeEEEeCCceeecCCCCCCccCccccCc-CCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhhchhhhccCC
Q 012829 3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV 81 (455)
Q Consensus 3 ~~i~~Ge~il~e~P~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~l~~~~~~~~ 81 (455)
++|++||+|+.|+|+++++.......+|.+|++. ..+.+|++|+.++|||++||+++|..|+.||+.++.+.... .+
T Consensus 25 r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~l~~~~~~~--~p 102 (433)
T 3qww_A 25 RPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLGENW--NP 102 (433)
T ss_dssp SCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTTTHHHHHHSSTTC--CC
T ss_pred CCCCCCCEEEecCCceEEecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHHHHHHHHHhCccC--CC
Confidence 6899999999999999999888889999999997 46899999999999999999999999999999999875432 24
Q ss_pred CHHHHHHHHHHHHHHhhCCCCCCCCCCCchhHHHHhhcccCCCChHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHhh
Q 012829 82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQW--PEISINEIAENFSK 159 (455)
Q Consensus 82 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~i~~~~~~ 159 (455)
+..+++++|+++++..+... . ..+.+..+..|++|.+++.+++...+......+..+++. ...+.++|..++++
T Consensus 103 ~~~~rl~~Ril~~~~~~~~~-~---~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~ 178 (433)
T 3qww_A 103 SETVRLTARILAKQKIHPER-T---PSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQ 178 (433)
T ss_dssp CHHHHHHHHHHHHHHHCCSC-C---GGGSSCCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhcccc-C---chhhhhhHHHHHhhhhccChHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 56789999998876544321 1 123455678899999988876543332222223333332 24578899999999
Q ss_pred hhccccccccCCCCcceeeecccccccCCCCCCCcEEEEeCCEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccC
Q 012829 160 LACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQY 239 (455)
Q Consensus 160 ~~~N~~~i~~~~~~~~g~~lyp~~s~~NHSC~PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y 239 (455)
+.+|+|++.+.+...+|.||||.+|+|||||+||+.+.|+|+.++|+|+|||++||||||||++..+++.+||+.|++.|
T Consensus 179 ~~~N~f~i~~~~~~~~g~gl~p~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~Geel~i~Y~~~~~~~~~R~~~L~~~~ 258 (433)
T 3qww_A 179 VNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSY 258 (433)
T ss_dssp HHHHCEEEECTTCCEEEEEECTTGGGSEECSSCSEEEEEETTEEEEEESSCBCTTCEEEECCSCTTSCHHHHHHHHHHHH
T ss_pred HcCCceecccCCccceeEEecccccccCCCCCCCceEEEcCCEEEEEeccCcCCCCEEEEeecCCcCCHHHHHHHHhCcC
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCCCCCCCchhhhhhHhhCccCCCCCCcccccCCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHhhh
Q 012829 240 LFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTS 319 (455)
Q Consensus 240 ~F~C~C~rC~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~e~~~l~~~a~~~~~ 319 (455)
+|+|.|.+|.+++ +|....++++ | +.....++++.+........+.......
T Consensus 259 ~F~C~C~~C~~~~------~d~~~~~~~~----~------------------~~~~~~e~v~~~~~~~~~~le~~~~~~~ 310 (433)
T 3qww_A 259 FFTCECRECTTKD------KDKAKVEVRK----L------------------SSPPQAEAIRDMVRYARNVIEEFRRAKH 310 (433)
T ss_dssp SCCCCSHHHHHCT------THHHHTCBCC----C------------------SSCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEeECCCCCCCC------cchhhhhhhh----c------------------CCCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999963 2333333321 1 1112345666666666666666666667
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829 320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 399 (455)
Q Consensus 320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 399 (455)
.|+|++|+.+++++++++++++|++|+.++.++++|+.+|..+|+|++|+.++++++.+++++||++||.+|..+++||.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829 400 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 441 (455)
Q Consensus 400 l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~ 441 (455)
+|+.+|++++|++++++|++|+++++|++||.+++++.+|++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHC
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998874
No 2
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=100.00 E-value=4.3e-76 Score=599.90 Aligned_cols=408 Identities=24% Similarity=0.434 Sum_probs=356.4
Q ss_pred CCCCCCCeEEEeCCceeecCCCCCCccCccccCc-CCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhhchhhhccCC
Q 012829 3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV 81 (455)
Q Consensus 3 ~~i~~Ge~il~e~P~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~l~~~~~~~~ 81 (455)
++|++||+|+.|+|+++++.......+|.+|++. ..+.+|++|++++|||++||+.+|..|+.||+.++.+.. .+
T Consensus 25 r~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~~~----~p 100 (490)
T 3n71_A 25 KEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGK----VP 100 (490)
T ss_dssp SCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHHHHHHHHHHTS----CC
T ss_pred cCCCCCCEEEecCCceEEecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHHHhHHHHhcCc----CC
Confidence 6899999999999999998888889999999997 458999999999999999999999999999999988752 34
Q ss_pred CHHHHHHHHHHHHHHhhCCCCCCCCCCCchhHHHHhhcccCCCChHHHHHHHH-HHHHHHHHhcC--CCCCHHHHHHHHh
Q 012829 82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQ-IANLVNLILQW--PEISINEIAENFS 158 (455)
Q Consensus 82 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~i~~~~~ 158 (455)
+..+++++|++++...+.... ....+..+..|++|.+++.+++...+.. +..++. +++. ..++.++|..+++
T Consensus 101 ~~~~rl~lRiL~~~~~~~~~~----~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 175 (490)
T 3n71_A 101 NENIRLAARIMWRVEREGTGL----TEGCLVSVDDLQNHVEHFGEEEQKELRVDVDTFLQ-YWPPQSQQFSMQYISHIFG 175 (490)
T ss_dssp CHHHHHHHHHHHHHHHTTSSB----CTTCSSBGGGSCCCGGGCCHHHHHHHHHHHHHHHH-HSCTTSCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccCccC----cchhhhHHHHHHhhhhhcCchHHHHHHHHHHHHHH-HccccccCCCHHHHHHHHH
Confidence 567899999998765443221 1234667889999999998776544333 333433 3432 3578899999999
Q ss_pred hhhccccccccCC-CCcceeeecccccccCCCCCCCcEEEEeCC-------------EEEEEEecccCCCCeeEEeecCC
Q 012829 159 KLACNAHTICNSE-LRPLGTGLYPVISIINHSCLPNAVLVFEGR-------------LAVVRAVQHVPKGAEVLISYIET 224 (455)
Q Consensus 159 ~~~~N~~~i~~~~-~~~~g~~lyp~~s~~NHSC~PN~~~~~~~~-------------~~~v~a~r~I~~GeEi~isY~~~ 224 (455)
++.+|+|++.+.+ ...+|.||||.+|+|||||+||+.+.|+++ .++|+|+|||++||||||||++.
T Consensus 176 ~~~~N~f~i~~~~g~~~~g~gl~p~~s~~NHSC~PN~~~~~~~~~~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~~ 255 (490)
T 3n71_A 176 VINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDF 255 (490)
T ss_dssp HHHTTEEEEECTTSCSEEEEEECTTGGGCEECSSCSEEEEEECCCCSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSCS
T ss_pred HHhccCcccccCCCCccceEEEchhhhhcccCCCCCeeEEecCCccccccccccccceEEEEECCCCCCCCEEEEeecCC
Confidence 9999999998776 468899999999999999999999999987 89999999999999999999999
Q ss_pred CCCHHHHHHHHhccCCeeeeccccCCCCCCCchhhhhhHhhCccCCCCCCcccccCCCCCCcccCCCCCcCCHHHHHHHH
Q 012829 225 AGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIA 304 (455)
Q Consensus 225 ~~~~~~R~~~L~~~y~F~C~C~rC~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~~~ 304 (455)
.+++.+||+.|++.|+|+|.|.+|.++. ..+.++ ++.+ +...+.+.+..+.
T Consensus 256 ~~~~~~R~~~L~~~~~F~C~C~~C~~~~-----~~~~~~-~~~~-----------------------~~~~s~e~v~~~l 306 (490)
T 3n71_A 256 LHLSEERRRQLKKQYYFDCSCEHCQKGL-----KDDLFL-AAKE-----------------------DPKPSQEVVKEMI 306 (490)
T ss_dssp CSCHHHHHHHHHHHHSSCCCCHHHHHTT-----THHHHT-CBCS-----------------------SSCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCeEeeCCCCCCCC-----cccchh-hccc-----------------------CCCCCHHHHHHHH
Confidence 9999999999999999999999999963 223333 2211 0123567888888
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 384 (455)
..++.+.+++..+..+|+|++|+.+++++++++++++|++|+.++.++++|+.+|..+|+|++|+.++++++.+++++||
T Consensus 307 ~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 307 QFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhh
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 448 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~ 448 (455)
++||.+|..+++||.+|..+|++++|+.++++|++|++.++|++||.+.+++.+|.+++.+++.
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887764
No 3
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=100.00 E-value=4.5e-75 Score=584.84 Aligned_cols=399 Identities=28% Similarity=0.502 Sum_probs=341.9
Q ss_pred CCCCCCCeEEEeCCceeecCCCCCCccCccccCc-CCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhhchhhhccCC
Q 012829 3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV 81 (455)
Q Consensus 3 ~~i~~Ge~il~e~P~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~l~~~~~~~~ 81 (455)
++|++||+|+.|.|++.++.......+|.+|++. ..+.+|++|++++|||++||+++|+.|+.||+.++.+.+. .+
T Consensus 23 r~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~~~~---~~ 99 (429)
T 3qwp_A 23 TPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPR---YP 99 (429)
T ss_dssp SCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHHHHHHHHHHTTTC---CC
T ss_pred CCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhHHhhhhHHhcCcc---CC
Confidence 6899999999999999999887889999999997 4589999999999999999999999999999999987542 34
Q ss_pred CHHHHHHHHHHHHHHhhCCCCCCCCCCCchhHHHHhhcccCCCChHHHHHHHHHHHHHHHHhcCC------CCCHHHHHH
Q 012829 82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWP------EISINEIAE 155 (455)
Q Consensus 82 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~i~~ 155 (455)
...+++++|++++..... + +..+.|..+..|++|.+++.+++...+..+...+..++... ..+.+++.+
T Consensus 100 ~~~~rl~~rill~~~~~~----~-~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 174 (429)
T 3qwp_A 100 PDSVRLLGRVVFKLMDGA----P-SESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFE 174 (429)
T ss_dssp CHHHHHHHHHHHHHHHSC----C-CGGGSSSCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHTTTTCCSGGGSCTTCCHHH
T ss_pred ChHHHHHHHHHHHHhcCC----C-CchhhhhhHHHHhhChhhcChhHHHHHHHHHHHHHHHHhhhcCccccCCCHHHHHH
Confidence 466889999888654211 1 12244556889999999988776555555544445555332 123457899
Q ss_pred HHhhhhccccccccCCCCcceeeecccccccCCCCCCCcEEEEeCCEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHH
Q 012829 156 NFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKAL 235 (455)
Q Consensus 156 ~~~~~~~N~~~i~~~~~~~~g~~lyp~~s~~NHSC~PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L 235 (455)
+++++.+|+|++.+.+..++|.|+||.+|+|||||.||+.+.|+|+.++|+|+|||++||||||||++..+++.+||+.|
T Consensus 175 ~~~~~~~N~f~i~~~~~~~~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L 254 (429)
T 3qwp_A 175 AFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL 254 (429)
T ss_dssp HHHHHHHHCEEEECTTSCEEEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHH
T ss_pred HHHHHHhcCccccccccccceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHH
Confidence 99999999999998888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCeeeeccccCCCCCCCchhhhhhHhhCccCCCCCCcccccCCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHH
Q 012829 236 KEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTL 315 (455)
Q Consensus 236 ~~~y~F~C~C~rC~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~e~~~l~~~a~ 315 (455)
+++|+|+|.|.+|.++. ..+.++. .. . ..+..++.+.+...
T Consensus 255 ~~~~~F~C~C~~C~~~~-----~~~~~~~---------------~~-~------------------~~~~~~~~ll~~ie 295 (429)
T 3qwp_A 255 RDQYCFECDCFRCQTQD-----KDADMLT---------------GD-E------------------QVWKEVQESLKKIE 295 (429)
T ss_dssp HHHHCCCCCSHHHHHTT-----THHHHTC---------------SC-H------------------HHHHHHHHHHHHHH
T ss_pred hccCCeEeeCCCCCCCc-----ccccccc---------------cc-h------------------hhhHHHHHHHHHHH
Confidence 99999999999999962 1111111 00 0 01122334445555
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 395 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 395 (455)
.+..+|++++|+.+++++++++.+++|++|+.++.++++|+.+|..+|+|++|+.++++++.+++++||++||.+|..++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhh
Q 012829 396 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 448 (455)
Q Consensus 396 ~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~ 448 (455)
+||.+|+.+|++++|++++++|++|++.++|++||.+++++.+|++++.++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998863
No 4
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=99.59 E-value=5.1e-16 Score=141.25 Aligned_cols=80 Identities=29% Similarity=0.408 Sum_probs=66.7
Q ss_pred hccccccccCCCCcceeeeccc-ccccCCCCCCCcEEEEe-CCEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhcc
Q 012829 161 ACNAHTICNSELRPLGTGLYPV-ISIINHSCLPNAVLVFE-GRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238 (455)
Q Consensus 161 ~~N~~~i~~~~~~~~g~~lyp~-~s~~NHSC~PN~~~~~~-~~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~ 238 (455)
..|.|.+..+. .....++|+. ++++||||+||+.+.+. +..+.|+|+|||++|||||++|++..++ .
T Consensus 155 ~~n~f~i~~~~-~~~~~~l~~~~ar~iNHSC~PN~~~~~~~~~~i~v~A~rdI~~GEElt~~Y~~~~~~----------~ 223 (247)
T 3rq4_A 155 GENDFSIMYST-RKRSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFG----------E 223 (247)
T ss_dssp TTSCTTEEEET-TTTEEEEEESGGGGCEECSSCSEEEEEETTTEEEEEESSCBCTTCBCEECCCTTSSS----------G
T ss_pred cCCcEEEEecC-CcccceeecchhhhcCCCCCCCEEEEEeCCCEEEEEECCcCCCCCEEEEecCchhcC----------C
Confidence 46777775442 3457889987 88999999999987754 6789999999999999999999998664 4
Q ss_pred CCeeeeccccCCC
Q 012829 239 YLFTCTCPRCIKL 251 (455)
Q Consensus 239 y~F~C~C~rC~~~ 251 (455)
++|.|.|.+|..+
T Consensus 224 ~~f~C~C~~C~~~ 236 (247)
T 3rq4_A 224 KNEHCECHTCERK 236 (247)
T ss_dssp GGTTCCCHHHHHH
T ss_pred CCCEEECCCCCCC
Confidence 7899999999885
No 5
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=99.51 E-value=5.1e-15 Score=135.98 Aligned_cols=82 Identities=24% Similarity=0.342 Sum_probs=64.0
Q ss_pred hhccccccccCCCCcceeeecccccccCCCCCCCcEEEEeCC-EEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhcc
Q 012829 160 LACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGR-LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238 (455)
Q Consensus 160 ~~~N~~~i~~~~~~~~g~~lyp~~s~~NHSC~PN~~~~~~~~-~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~ 238 (455)
...|.|.+........+......++++||||+||+.+.++|. .+.++|+|||++|||||++|++..++ .
T Consensus 183 ~~~~dF~i~~s~~~~~a~~~g~~arfiNHSC~PN~~~~~~~~~~i~i~A~RdI~~GEELt~~Y~~~~~~----------~ 252 (273)
T 3s8p_A 183 HGENDFSVMYSTRKNCAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFG----------E 252 (273)
T ss_dssp TTTSCTTEEEETTTTEEEEEESGGGGCEECSSCSEEEEEEETTEEEEEESSCBCTTCBCEECCCTTTTS----------G
T ss_pred hcccccceeccccccccceecchHHhhCCCCCCCeEEEEcCCCEEEEEECceeCCCCEEEEecCchhcC----------C
Confidence 346777765443333343344557999999999999988875 89999999999999999999988654 4
Q ss_pred CCeeeeccccCCC
Q 012829 239 YLFTCTCPRCIKL 251 (455)
Q Consensus 239 y~F~C~C~rC~~~ 251 (455)
++|.|.|.+|.-.
T Consensus 253 ~~f~C~C~~c~cr 265 (273)
T 3s8p_A 253 NNEFCECYTCERR 265 (273)
T ss_dssp GGTTCCCHHHHHH
T ss_pred CCeEEECCCCcCC
Confidence 6899999999764
No 6
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.44 E-value=4.9e-13 Score=135.84 Aligned_cols=113 Identities=12% Similarity=-0.065 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
+..+.+.|..+..+|+|++|+.++++++++.++++|++||.++.++.+|+.+|..+|+|++|..++++++.++++++|++
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44556677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
||.++..+.+|+..+..++++++|+..|++|.+
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864
No 7
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.3e-13 Score=98.80 Aligned_cols=59 Identities=32% Similarity=0.619 Sum_probs=40.7
Q ss_pred CCCCCCCeEEEeCCceeecCCCCCCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhh
Q 012829 3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS 71 (455)
Q Consensus 3 ~~i~~Ge~il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~ 71 (455)
.+|++||+|+.+.| ....|..|++. .+.+|++|+.++|||.+||..+|..|+.+|..+.
T Consensus 2 ~~~~~G~~il~~~~---------~~~~C~~C~~~-~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~~C~~~~ 60 (64)
T 2odd_A 2 NLYFQGENLYFQGD---------SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTL 60 (64)
T ss_dssp -------------C---------CSSSCTTTSSC-CCEEETTTSCCEESSHHHHHHHHHHHTTTTTSSC
T ss_pred CcCCCCCEEeeCCC---------CCCcCccccCC-CcccCCCCCChhhCCHHHHHHHHHHHhHHHhccc
Confidence 57999999999998 25789999984 5899999999999999999999999999998543
No 8
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=99.35 E-value=3.2e-13 Score=110.22 Aligned_cols=54 Identities=22% Similarity=0.189 Sum_probs=48.5
Q ss_pred ceeeecccccccCCCCCCCcEEEEe--CCEEEEEEecccCCCCeeEEeecCCCCCH
Q 012829 175 LGTGLYPVISIINHSCLPNAVLVFE--GRLAVVRAVQHVPKGAEVLISYIETAGST 228 (455)
Q Consensus 175 ~g~~lyp~~s~~NHSC~PN~~~~~~--~~~~~v~a~r~I~~GeEi~isY~~~~~~~ 228 (455)
.+..+++.++++||||+||+...++ +..+.++|+|||++|||||++|++..+..
T Consensus 57 d~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~ 112 (119)
T 1n3j_A 57 MSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLS 112 (119)
T ss_dssp EEEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCCCCCCCCC
T ss_pred ccccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEEecCchhhcC
Confidence 5778999999999999999999987 34799999999999999999999987654
No 9
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=1e-10 Score=108.51 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
...+...+..+...|++++|+..+++++++....++++++....+...++.+|...|++++|+.++++++..+++..+++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455667778889999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
+|..+..+.++|.++..+|++++|+.++++|+++.+...|+++|....+...|..+.....
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999998888888777755443
No 10
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.22 E-value=4.6e-11 Score=119.42 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=82.5
Q ss_pred HhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829 360 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 439 (455)
Q Consensus 360 ~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l 439 (455)
...|+|++|+.++++++.+.++++|++||.++..+++||.+|..+|++++|+.++++|++|.+..+|++||.+...+..|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 012829 440 EEAQAEA 446 (455)
Q Consensus 440 ~~~~~~~ 446 (455)
..+....
T Consensus 389 a~~~~~q 395 (433)
T 3qww_A 389 GRLYMGL 395 (433)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 8886544
No 11
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=99.21 E-value=7.9e-12 Score=110.02 Aligned_cols=55 Identities=27% Similarity=0.529 Sum_probs=41.6
Q ss_pred cccccCCCCCCCcEEEE---eC-CEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccCCeeeec
Q 012829 182 VISIINHSCLPNAVLVF---EG-RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTC 245 (455)
Q Consensus 182 ~~s~~NHSC~PN~~~~~---~~-~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y~F~C~C 245 (455)
.++++||||+||+...+ +| ..+.++|+|||++|||||++|.+..+.. .+.|.|.|
T Consensus 124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~---------~~~~~C~C 182 (192)
T 2w5y_A 124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDA---------SNKLPCNC 182 (192)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC----------------CCBCCC
T ss_pred hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcC---------CCCceeEC
Confidence 46789999999998743 34 3688999999999999999999876532 46899998
No 12
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=2.9e-10 Score=105.37 Aligned_cols=129 Identities=14% Similarity=0.043 Sum_probs=119.5
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
....|++++|+..+++++++..++.++.++....++..++.+|...|++++|+.++++++...+..+|+++|..+..+.+
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34678999999999999999888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 397 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
+|.++..+|++++|+.++++|+++.+...|+++|....+...+..+...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 139 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN 139 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988888777776543
No 13
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.15 E-value=1.7e-10 Score=115.41 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
+..+.+.+..+..+|+|++|+.++++++++.++++|+.||.++.++.+|+.+|..+|++++|+.+++++++++++++|++
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455566777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhhc
Q 012829 387 HPLLGLQYYTCGKLEWFL 404 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~ 404 (455)
||.++..+.+|+.+...+
T Consensus 409 Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 409 HSLIEDLILLLEECDANI 426 (429)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 999999999998887544
No 14
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=2e-09 Score=101.34 Aligned_cols=139 Identities=16% Similarity=0.153 Sum_probs=126.3
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.+...+..+...|++++|+..+++++.+.....+++++....+...++.+|...|++++|+.++++++...+..+|+++|
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 34455667778899999999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
..+..++.+|.++...|++++|+.++++|+++.+...|+++|....+...+..+.....
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 209 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999998888877777755443
No 15
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.10 E-value=1.9e-09 Score=101.50 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=124.7
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..+...+..+...|++++|+..+++++++.....++.++....+...++.+|...|++++|+.++++++...+..+|+++
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455566777899999999999999998877777788888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
|..+..++.+|.++...|++++|+.++++|+++.+..+|+++|....+...+..+...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 165 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN 165 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888888777766543
No 16
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=99.09 E-value=2.5e-11 Score=105.16 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=45.0
Q ss_pred cccccCCCCCCCcEEE--EeCC--EEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHh
Q 012829 182 VISIINHSCLPNAVLV--FEGR--LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALK 236 (455)
Q Consensus 182 ~~s~~NHSC~PN~~~~--~~~~--~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~ 236 (455)
.+.++||||.|||... +.++ .+.++|+|||++|||||++|.+.......|+.+|+
T Consensus 107 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~L~ 165 (166)
T 3f9x_A 107 LGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRSKASIEAHPWLK 165 (166)
T ss_dssp SGGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCCCHHHHHHCGGGG
T ss_pred hhheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCChhhHhhhCchhc
Confidence 3578999999998764 3343 58899999999999999999998877777777665
No 17
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=99.00 E-value=1.3e-10 Score=105.14 Aligned_cols=56 Identities=25% Similarity=0.358 Sum_probs=43.3
Q ss_pred cccccCCCCCCCcEEEE--eCC--EEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccCCeeeecc
Q 012829 182 VISIINHSCLPNAVLVF--EGR--LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCP 246 (455)
Q Consensus 182 ~~s~~NHSC~PN~~~~~--~~~--~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y~F~C~C~ 246 (455)
.+.++||||+||+.+.. .++ .+.++|+|||++|||||++|.+..+.. ...|.|.|-
T Consensus 146 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~---------~~~~~C~CG 205 (222)
T 3ope_A 146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNV---------EKQQLCKCG 205 (222)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSSBCCC---------SCCCBCCCC
T ss_pred cceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCcccCC---------cCCCEeeCC
Confidence 35688999999998754 333 688999999999999999998875532 235777664
No 18
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=98.99 E-value=2.2e-10 Score=104.31 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=43.4
Q ss_pred cccccCCCCCCCcEEEE--eC--CEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccCCeeeecc
Q 012829 182 VISIINHSCLPNAVLVF--EG--RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCP 246 (455)
Q Consensus 182 ~~s~~NHSC~PN~~~~~--~~--~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y~F~C~C~ 246 (455)
.+.++||||+||+.+.+ .+ ..+.++|+|||++|||||++|....+. ...|.|.|-
T Consensus 165 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~----------~~~~~C~CG 223 (232)
T 3ooi_A 165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLG----------NGKTVCKCG 223 (232)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCSTT----------CTTCBCCCC
T ss_pred ccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCcCC----------CCCcEeECC
Confidence 46789999999998753 22 368899999999999999999876542 346888773
No 19
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.99 E-value=1.7e-08 Score=82.87 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
+....+.+..++..|++++|+..|++++++ .|. -..++.+++.+|..+|+|++|++.+++++.+... .+..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~ 78 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchh
Confidence 334455677788999999999999999875 233 3567889999999999999999999999997764 4557
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
++.++..++++|.++..+|++++|+.++++|+.+
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999999974
No 20
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}
Probab=98.95 E-value=5.4e-10 Score=113.18 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHhhhhccccccccCCCCcceeeecccccccCCCCCCCc-EEEEeCCEEEEEEecccCCCCeeEEeecCCC
Q 012829 147 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNA-VLVFEGRLAVVRAVQHVPKGAEVLISYIETA 225 (455)
Q Consensus 147 ~~~~~~i~~~~~~~~~N~~~i~~~~~~~~g~~lyp~~s~~NHSC~PN~-~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~ 225 (455)
.++.+.+.-.++.+.+++|.+...+....+.+|+|.+.++||||.||. .+.++++.+.++|.++|++||||+|||++..
T Consensus 237 ~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~isYG~~~ 316 (497)
T 3smt_A 237 SFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRS 316 (497)
T ss_dssp CCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEESSCBCTTCEEEECCCSCC
T ss_pred ccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccceeeeccCCeEEEEeCCccCCCCEEEEeCCCCC
Confidence 467788888888899999988765555667899999999999999964 4445678899999999999999999999863
Q ss_pred CCHHHHHHHHhccCCeeee
Q 012829 226 GSTMTRQKALKEQYLFTCT 244 (455)
Q Consensus 226 ~~~~~R~~~L~~~y~F~C~ 244 (455)
...|...|||.+.
T Consensus 317 ------n~~Ll~~YGFv~~ 329 (497)
T 3smt_A 317 ------NAEFVIHSGFFFD 329 (497)
T ss_dssp ------HHHHHHHHSCCCT
T ss_pred ------hHHHHHHCCCCCC
Confidence 2567779999964
No 21
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.95 E-value=2.1e-08 Score=81.66 Aligned_cols=122 Identities=11% Similarity=0.047 Sum_probs=101.7
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
+...+..+...|++++|+..++++++. .|.++....+...++.++...|+|++|+.++++++... |.++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~ 74 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHDK 74 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCcc
Confidence 345667778899999999999988764 46677777888899999999999999999999988743 56766
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 446 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~ 446 (455)
....++.+|.++..+|++++|+..++++++.. |+++........|..+...+
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~l~~~~ 126 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQSIRLGQ 126 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHhhh
Confidence 77889999999999999999999999999853 88999999888888876654
No 22
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.92 E-value=3.4e-08 Score=81.04 Aligned_cols=107 Identities=14% Similarity=0.090 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
+...+.+..++..|++++|+..|++++++ .|. -..++.+++.+|..+|++++|+..+++++.+ .+.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~ 80 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPE---NAILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSKF 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhhh
Confidence 44556778888999999999999999875 233 3567788999999999999999999999874 2333
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHH
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL 435 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~ 435 (455)
...++++|.++..+|++++|+..+++|+++ .|+++....-
T Consensus 81 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~~a~~~ 120 (126)
T 4gco_A 81 ---IKGYIRKAACLVAMREWSKAQRAYEDALQV-----DPSNEEAREG 120 (126)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred ---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CcCCHHHHHH
Confidence 456999999999999999999999999985 5777655443
No 23
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=98.91 E-value=5e-10 Score=104.30 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=41.8
Q ss_pred cccccCCCCCCCcEEE--EeCC--EEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccCCeeeecc
Q 012829 182 VISIINHSCLPNAVLV--FEGR--LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCP 246 (455)
Q Consensus 182 ~~s~~NHSC~PN~~~~--~~~~--~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y~F~C~C~ 246 (455)
.+.++||||+||+... +.++ .+.|+|+|||++|||||++|....+. ...|.|.|-
T Consensus 190 ~aRFiNHSC~PN~~~~~~~v~g~~ri~~fA~RdI~~GEELT~dY~~~~~~----------~~~~~C~CG 248 (278)
T 3h6l_A 190 CSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYG----------KEAQKCFCG 248 (278)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTTEEC----------SSCEECCCC
T ss_pred hhhhcccCCCCCceeEEEEeCCceEEEEEECCccCCCCEEEEecCCCcCC----------CCCcEeECC
Confidence 3568899999997653 3343 57899999999999999999765332 346788773
No 24
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Probab=98.90 E-value=1.2e-09 Score=109.46 Aligned_cols=90 Identities=23% Similarity=0.239 Sum_probs=72.6
Q ss_pred CCHHHHHHHHhhhhccccccccCC----CCcceeeecccccccCCCCCCCcEEEEeCCEEEEEEecccCCCCeeEEeecC
Q 012829 148 ISINEIAENFSKLACNAHTICNSE----LRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIE 223 (455)
Q Consensus 148 ~~~~~i~~~~~~~~~N~~~i~~~~----~~~~g~~lyp~~s~~NHSC~PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~ 223 (455)
++.+.+...++.+..-+|.+...+ ....+.+|.|.+.++||||.||+.+.|+++.++++|.|+|++||||+|||++
T Consensus 184 ~t~e~f~wA~~~v~SRsf~~~~~~~~~~~~~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~a~~~i~~Geei~~~YG~ 263 (449)
T 3qxy_A 184 RSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQ 263 (449)
T ss_dssp CCHHHHHHHHHHHHHHCBCCCCC-----CCCCCCBBCTTGGGCEECSSCSEEEEECSSEEEEEESSCBCTTCEEEECCSS
T ss_pred CcHHHHHHHHHHHHHHhcccccCcccccccCCceeEeecHHHhcCCCCCCeEEEEeCCeEEEEECCCcCCCchhhccCCC
Confidence 566666667777777777653221 2246789999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHhccCCeee
Q 012829 224 TAGSTMTRQKALKEQYLFTC 243 (455)
Q Consensus 224 ~~~~~~~R~~~L~~~y~F~C 243 (455)
.. ...|...|||..
T Consensus 264 ~~------n~~ll~~YGF~~ 277 (449)
T 3qxy_A 264 MA------NWQLIHMYGFVE 277 (449)
T ss_dssp CC------HHHHHHHHSCCC
T ss_pred CC------HHHHHHhCCCCC
Confidence 43 256667999984
No 25
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.87 E-value=5.1e-08 Score=83.24 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhccc---CCc-------cccHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY---HPF-------SVNLMQTREKLIKILMELEDWKEALAYCQL 374 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l---~~~-------~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 374 (455)
..+..+.+.+..++..|++++|+..|.+++.+..... .|. ++....++.+++.+|..+|+|++|+.++.+
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3456677788888999999999999999988743321 122 455667889999999999999999999999
Q ss_pred hhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh
Q 012829 375 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 430 (455)
Q Consensus 375 ~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp 430 (455)
++.+ .|.....++.+|.++..+|++++|+..+++|+++ .|+++
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~p~~~ 131 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN-----HPAAA 131 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CGGGH
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCCCH
Confidence 9986 2444567999999999999999999999999986 45655
No 26
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.86 E-value=5.5e-08 Score=82.57 Aligned_cols=113 Identities=9% Similarity=0.079 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
...+...+..+...|++++|+..+++++.+ .|.+ ...+.+++.+|..+|+|++|+..+++++.+. |+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~---~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-----P~ 102 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYN---VDYIMGLAAIYQIKEQFQQAADLYAVAFALG-----KN 102 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-----CC
Confidence 344566777788999999999999999875 3444 4567889999999999999999999998843 45
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 440 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~ 440 (455)
+|. .++++|.++..+|++++|+..+++|+++. |+++........|+
T Consensus 103 ~~~---~~~~lg~~~~~lg~~~eA~~~~~~al~l~-----~~~~~~~~A~~ll~ 148 (151)
T 3gyz_A 103 DYT---PVFHTGQCQLRLKAPLKAKECFELVIQHS-----NDEKLKIKAQSYLD 148 (151)
T ss_dssp CCH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHH
T ss_pred CcH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHH
Confidence 654 58999999999999999999999999863 66664444444433
No 27
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=98.86 E-value=4.4e-10 Score=105.37 Aligned_cols=55 Identities=29% Similarity=0.476 Sum_probs=42.0
Q ss_pred ccccCCCCCCCcEEE--EeC------CEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccCCeeeec
Q 012829 183 ISIINHSCLPNAVLV--FEG------RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTC 245 (455)
Q Consensus 183 ~s~~NHSC~PN~~~~--~~~------~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y~F~C~C 245 (455)
+.++||||+||+... +.. ..+.++|+|||++|||||++|.+.+++. ....|.|.|
T Consensus 217 aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~~~~--------~~~~~~C~C 279 (287)
T 3hna_A 217 SRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDI--------KGKLFSCRC 279 (287)
T ss_dssp GGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHHHHH--------HTTTCCCCC
T ss_pred hheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCccccc--------CCCcCEeeC
Confidence 557799999999753 321 2789999999999999999998643321 134788888
No 28
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.84 E-value=1.4e-09 Score=100.42 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=37.9
Q ss_pred cccccCCCCCCCcEEEE--e---CCEEEEEEecccCCCCeeEEeecCCCCC
Q 012829 182 VISIINHSCLPNAVLVF--E---GRLAVVRAVQHVPKGAEVLISYIETAGS 227 (455)
Q Consensus 182 ~~s~~NHSC~PN~~~~~--~---~~~~~v~a~r~I~~GeEi~isY~~~~~~ 227 (455)
.++++||||+||+...+ + +..+.++|+|||++|||||++|.....+
T Consensus 186 ~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg~~~~~ 236 (261)
T 2f69_A 186 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSP 236 (261)
T ss_dssp CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCSCC
T ss_pred ceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcCCcccc
Confidence 35789999999998876 2 2345899999999999999999876653
No 29
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.82 E-value=1.3e-07 Score=78.88 Aligned_cols=121 Identities=12% Similarity=0.103 Sum_probs=96.9
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..+...+..+...|++++|+..+++++.+ .|.+ ...+..++.+|...|++++|+..+++++.. .|.+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~ 85 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALM-----DINE 85 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCC
Confidence 34556677788899999999999998764 3444 455678999999999999999999999884 3456
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 449 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~ 449 (455)
|. .++++|.++..+|++++|+..+++|+++. |++|....+......+...+..+
T Consensus 86 ~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 86 PR---FPFHAAECHLQLGDLDGAESGFYSARALA-----AAQPAHEALAARAGAMLEAVTAR 139 (142)
T ss_dssp TH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTCGGGHHHHHHHHHHHHHHHHH
T ss_pred cH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHHHhc
Confidence 54 47899999999999999999999999864 56777777777777777666654
No 30
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=98.82 E-value=1.8e-09 Score=102.37 Aligned_cols=64 Identities=27% Similarity=0.485 Sum_probs=35.7
Q ss_pred cccccCCCCCCCcEEEE-eC-------CEEEEEEecccCCCCeeEEeecCCCCCHHH-HHHHHhccCCeeeec
Q 012829 182 VISIINHSCLPNAVLVF-EG-------RLAVVRAVQHVPKGAEVLISYIETAGSTMT-RQKALKEQYLFTCTC 245 (455)
Q Consensus 182 ~~s~~NHSC~PN~~~~~-~~-------~~~~v~a~r~I~~GeEi~isY~~~~~~~~~-R~~~L~~~y~F~C~C 245 (455)
.+.++||||+||+.+.. .+ ..+.++|+|+|++|||||++|.+..+.... +....+....|.|.|
T Consensus 220 ~arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~~~~~~~~~~~~k~~~~~~C~C 292 (302)
T 1ml9_A 220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC 292 (302)
T ss_dssp GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------
T ss_pred HHHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCccccccccccccccCCCcEeeC
Confidence 46789999999997653 22 268999999999999999999887653221 111122234567766
No 31
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.1e-07 Score=77.28 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
...+...+..+...|++++|+..+++++.+. |.+ ..++.+++.+|...|+|++|+..+++++.+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------- 68 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKD------- 68 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------
Confidence 3456677888889999999999999998752 333 4678889999999999999999999998852
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
|.....++.+|.++..+|++++|+..+++|+++-... ++.|...++...|..+...
T Consensus 69 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 69 -PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHHh
Confidence 3335678999999999999999999999999976333 2234445555566555544
No 32
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.78 E-value=2.1e-09 Score=75.51 Aligned_cols=45 Identities=38% Similarity=0.761 Sum_probs=40.3
Q ss_pred CCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhh
Q 012829 26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS 71 (455)
Q Consensus 26 ~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~ 71 (455)
....|..|++. .+.+|.+|+.++|||++||..+|..|+.+|..+.
T Consensus 14 ~~~~C~~C~~~-~~~~Cs~C~~v~YCs~~CQ~~~W~~Hk~~C~~~~ 58 (60)
T 2dj8_A 14 SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICSGPS 58 (60)
T ss_dssp CSCCCSSSCSC-CCEECTTTSCCEESSHHHHHHTHHHHTTTSCCSS
T ss_pred CCcccccCCCC-CcccCCCCCCEeeeCHHHHHHHHHHHHHHHHhcc
Confidence 46899999984 5899999999999999999999999999998653
No 33
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.78 E-value=2.1e-09 Score=73.33 Aligned_cols=46 Identities=30% Similarity=0.773 Sum_probs=36.9
Q ss_pred CCCCCCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhH
Q 012829 22 NNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68 (455)
Q Consensus 22 ~~~~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~ 68 (455)
++......|..|++. .+.+|++|+.++|||.+||..+|..|+.+|.
T Consensus 4 ~~~~~~~~C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C~ 49 (52)
T 2jw6_A 4 DAERKEQSCVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHICG 49 (52)
T ss_dssp -------CCSSSSSS-CSEECTTTCSSEESSHHHHHHHTTTGGGTTT
T ss_pred CccccCCcCCCCCCC-CcCcCCCCCCEeecCHHHHHHHHHHHCHHHc
Confidence 344457899999985 6899999999999999999999999999997
No 34
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=98.78 E-value=3.9e-09 Score=99.55 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=37.5
Q ss_pred cccccCCCCCCCcEEE--EeC------CEEEEEEecccCCCCeeEEeecCCCC
Q 012829 182 VISIINHSCLPNAVLV--FEG------RLAVVRAVQHVPKGAEVLISYIETAG 226 (455)
Q Consensus 182 ~~s~~NHSC~PN~~~~--~~~------~~~~v~a~r~I~~GeEi~isY~~~~~ 226 (455)
.+.++||||+||+.+. +.+ ..+.++|+|+|++|||||++|.+..+
T Consensus 213 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~ 265 (299)
T 1mvh_A 213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKD 265 (299)
T ss_dssp GGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSS
T ss_pred hhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEcCCccc
Confidence 4668999999999863 322 37899999999999999999988765
No 35
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.77 E-value=4.8e-07 Score=76.72 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCC---c-cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP---F-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ 380 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~---~-~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~ 380 (455)
.+...+...+..++..|++++|+..|.+++++....... + .+.-..++.+++.++..+|+|++|+..+.++|.++.
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 355666778888889999999999999999875431100 1 112334889999999999999999999999999865
Q ss_pred hhcCCCChHHHHHH----HHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829 381 RVYPQFHPLLGLQY----YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 446 (455)
Q Consensus 381 ~~~g~~hp~~~~~l----~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~ 446 (455)
+.. +-.|..+..+ ++.|.++..+|++++|+..|++|+++--.--|. -+....+..++++-...+
T Consensus 89 ~~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~-~~~~~~~~~~~~~~~~k~ 156 (159)
T 2hr2_A 89 RRG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-TPGKERMMEVAIDRIAQL 156 (159)
T ss_dssp HHC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC-CTTHHHHHHHHHHHHHHH
T ss_pred ccc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHHh
Confidence 544 4556667777 999999999999999999999999985443332 333445555555444444
No 36
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.76 E-value=1.4e-07 Score=79.57 Aligned_cols=122 Identities=12% Similarity=0.121 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
...+...+..+...|++++|+..+++++.+ .|.+ ..++..++.+|...|+|++|+..+++++.+ .|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~ 87 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----DIX 87 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----Cccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCC
Confidence 444566777888999999999999998764 3344 455678999999999999999999999874 345
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 449 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~ 449 (455)
+| ..++++|.++..+|++++|+..+++|+++. |++|...++......+...+..+
T Consensus 88 ~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~l~~l~~~ 142 (148)
T 2vgx_A 88 EP---RFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFXELSTRVSSMLEAIKLK 142 (148)
T ss_dssp CT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGHHHHHHHHHHHHHC---
T ss_pred Cc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcchHHHHHHHHHHHHHHhH
Confidence 55 458899999999999999999999998854 45666666666666665555443
No 37
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=98.74 E-value=6.9e-09 Score=97.76 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=36.9
Q ss_pred cccccCCCCCCCcEEE--E-eC-----CEEEEEEecccCCCCeeEEeecCCC
Q 012829 182 VISIINHSCLPNAVLV--F-EG-----RLAVVRAVQHVPKGAEVLISYIETA 225 (455)
Q Consensus 182 ~~s~~NHSC~PN~~~~--~-~~-----~~~~v~a~r~I~~GeEi~isY~~~~ 225 (455)
.+.++||||+||+.+. + ++ ..+.++|+|+|++|||||++|....
T Consensus 215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~~~~ 266 (300)
T 2r3a_A 215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKG 266 (300)
T ss_dssp GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGGGSS
T ss_pred hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECCCCc
Confidence 5679999999999874 2 21 3689999999999999999998764
No 38
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.73 E-value=4.4e-07 Score=75.88 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
...+...+..+...|++++|+..+++++++.... ........+...++.++...|++++|++++++++...+.. .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~ 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KD 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CC
Confidence 3445556677778899999999999998876542 2344556788899999999999999999999999988765 45
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
.+..+..++++|.++...|++++|+.++++|+++.... .+++....+...+..+...
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999987765 2345555555555555443
No 39
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=98.72 E-value=6.4e-09 Score=98.52 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=35.6
Q ss_pred ccccCCCCCCCcEEEEe-----CCEEEEEEecccCCCCeeEEeecCCC
Q 012829 183 ISIINHSCLPNAVLVFE-----GRLAVVRAVQHVPKGAEVLISYIETA 225 (455)
Q Consensus 183 ~s~~NHSC~PN~~~~~~-----~~~~~v~a~r~I~~GeEi~isY~~~~ 225 (455)
++++||||+|||...+. +..+.|+|+|||++|||||++|....
T Consensus 241 ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~~~ 288 (293)
T 1h3i_A 241 GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDH 288 (293)
T ss_dssp GGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEETTB
T ss_pred eeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCCCC
Confidence 56889999999998762 23358999999999999999996543
No 40
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=6.1e-07 Score=76.58 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
...+...+..+...|++++|+..+++++++. |. ...++.+++.+|...|+|++|+.++++++.+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 75 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----PA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVD------- 75 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----Cc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------
Confidence 3455667777888999999999999998752 33 35678889999999999999999999998853
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
|.....++++|.++..+|++++|+..+++|+++-
T Consensus 76 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 76 -PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3335678999999999999999999999999864
No 41
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=98.69 E-value=1.1e-08 Score=96.11 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=38.2
Q ss_pred cccccCCCCCCCcEEEE---eC--CEEEEEEecccCCCCeeEEeecCCCC
Q 012829 182 VISIINHSCLPNAVLVF---EG--RLAVVRAVQHVPKGAEVLISYIETAG 226 (455)
Q Consensus 182 ~~s~~NHSC~PN~~~~~---~~--~~~~v~a~r~I~~GeEi~isY~~~~~ 226 (455)
.+.++||||+||+.+.. ++ ..+.++|+|+|++|||||++|.+.++
T Consensus 205 ~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~ 254 (290)
T 3bo5_A 205 IGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYL 254 (290)
T ss_dssp GGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCTT
T ss_pred chheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCccc
Confidence 46689999999998753 43 47899999999999999999998764
No 42
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*
Probab=98.68 E-value=1.4e-08 Score=85.33 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=40.5
Q ss_pred ccccCCCCCC---CcEEEEeCCEEEEEEecccCCCCeeEEeecCCCCC
Q 012829 183 ISIINHSCLP---NAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGS 227 (455)
Q Consensus 183 ~s~~NHSC~P---N~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~~~ 227 (455)
+.++||||.| |+...-.++.+.++|+|||++||||++.|.+...|
T Consensus 100 ~RfINhSc~p~eqNl~~~~~~~~I~~~A~RdI~~GEEL~~dY~~~~~~ 147 (149)
T 2qpw_A 100 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGEDNP 147 (149)
T ss_dssp GGGCEECBTTBTCCEEEEEETTEEEEEESSCBCTTCBCEECCCCCCCC
T ss_pred eeeeeccCChhhcCEEEEEECCEEEEEEccCCCCCCEEEEccCCccCC
Confidence 5689999999 99987778899999999999999999999887654
No 43
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.65 E-value=1.4e-06 Score=70.16 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
......+..+...|++++|+..+++++... |.+ ..+...++.++...|++++|+.++++++..... .+..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 75 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-----PTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDY 75 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Ccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhH
Confidence 344556677788999999999999988752 233 456788999999999999999999999987653 35566
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
+..+..++.+|.++...|++++|+..+++++++
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 677889999999999999999999999999985
No 44
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.64 E-value=5.8e-07 Score=87.97 Aligned_cols=128 Identities=9% Similarity=0.029 Sum_probs=107.3
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+......|++++|+..+++++++...+ ++.+..+.+...++.+|...|++++|+.++.+++.+++.. +.+++..+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~ 185 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHH
Confidence 6777888999999999999998875443 4456678899999999999999999999999999999876 446788999
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
.++++|.++..+|++++|+.++++|+++.... .+++....+...|..+...
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~ 236 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNS 236 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876 4555555666666655443
No 45
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.64 E-value=1.5e-06 Score=76.54 Aligned_cols=124 Identities=10% Similarity=0.057 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc----------HHHHHHHHHHHHHhcccHHHHHHHHH
Q 012829 304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN----------LMQTREKLIKILMELEDWKEALAYCQ 373 (455)
Q Consensus 304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~----------~~~~~~~L~~~~~~~g~~~~A~~~~~ 373 (455)
...+..+...+..+...|++++|+..+++++.+... .+.... ...++.+++.+|...|+|++|+.+++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 345566777888889999999999999999875322 111111 13678899999999999999999999
Q ss_pred HhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 374 LTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 374 ~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
+++.. +|.....++.+|.++..+|++++|+..+++|+++ .|+++.+...+..+...
T Consensus 113 ~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 113 KVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHH
T ss_pred HHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHH
Confidence 99885 2334567899999999999999999999999986 46666555544444433
No 46
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=98.62 E-value=1.1e-08 Score=71.82 Aligned_cols=44 Identities=36% Similarity=0.774 Sum_probs=39.7
Q ss_pred CCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhh
Q 012829 26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVL 70 (455)
Q Consensus 26 ~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~ 70 (455)
....|..|++. .+.+|.+|+.++|||.+||..+|..|+.+|..+
T Consensus 12 ~~~~C~~C~~~-~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~~C~~~ 55 (60)
T 2od1_A 12 SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQT 55 (60)
T ss_dssp CSSCCTTTSSC-CCEECTTTSCCEESSHHHHHHHHHHHTTTSSCS
T ss_pred CCCccccCCCc-ccccCCCCCCeeecCHHHHHHHHHHHhHHHccc
Confidence 46899999984 589999999999999999999999999999854
No 47
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=98.62 E-value=2.4e-08 Score=72.09 Aligned_cols=45 Identities=38% Similarity=0.890 Sum_probs=40.6
Q ss_pred CccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhh
Q 012829 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSR 72 (455)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~ 72 (455)
...|..|.+. .+.+|.+|+.++|||.+||..+|..|+.+|..+..
T Consensus 15 ~~~C~~C~~~-~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~~C~~~~~ 59 (70)
T 2d8q_A 15 RPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ 59 (70)
T ss_dssp CCBCSSSCCB-CCCBCTTTSCCBCSCHHHHHHTHHHHHHHCCCCCC
T ss_pred CCcCCCCCCc-ccccCCCCCCEeeCCHHHhHHHHHHHHHHHHHHHH
Confidence 5799999985 58899999999999999999999999999986653
No 48
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.60 E-value=6.6e-07 Score=87.54 Aligned_cols=131 Identities=12% Similarity=0.182 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
.......+..+...|++++|+..+++++++.... +...+..+.+..+++.+|..+|++++|++++++++.+.+.. ++
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 219 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQ 219 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CC
Confidence 3445566777788999999999999999886653 33366778899999999999999999999999999998876 57
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
++..+..++++|.++..+|++++|+.++++|+++.+.... .|....+...|..+
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI--LPSLPQAYFLITQI 273 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHH
Confidence 7888999999999999999999999999999999877644 13334444444444
No 49
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=1.5e-06 Score=76.25 Aligned_cols=114 Identities=8% Similarity=0.048 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..+...+..+...|++++|+..+++++.+.... ...+....+..+++.+|...|++++|++++++++.+.+ -.|..+
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~ 103 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDP 103 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccH
Confidence 344556667778899999999999998876543 23456778889999999999999999999999999887 445455
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
+..+..++++|.++..+|++++|+.++++|+++.+..
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999986543
No 50
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=2.2e-06 Score=70.11 Aligned_cols=100 Identities=13% Similarity=0.128 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..+...+..+...|++++|+..+++++.+. |. ...++..++.++...|+|++|+.++++++... +.+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~ 76 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-----PL---VAVYYTNRALCYLKMQQPEQALADCRRALELD-----GQS 76 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----cC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----chh
Confidence 344556777788999999999999988752 33 35678889999999999999999999988753 233
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
...++.+|.++..+|++++|+..+++|+++-..
T Consensus 77 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 ---VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 456899999999999999999999999997655
No 51
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=9.8e-07 Score=73.01 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=89.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.+...+..+...|++++|+..+++++++ .|.+.....++..++.+|...|+|++|+.++++++... +.+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~- 98 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-----GGD- 98 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----SCC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-----ccC-
Confidence 3445567778899999999999988753 45555567888899999999999999999999988752 233
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 439 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l 439 (455)
...++.+|.++..+|++++|+..+++|+++ .|+++.+...+..+
T Consensus 99 --~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 99 --VKALYRRSQALEKLGRLDQAVLDLQRCVSL-----EPKNKVFQEALRNI 142 (148)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHH
Confidence 466889999999999999999999999985 46676555544443
No 52
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.58 E-value=1.1e-06 Score=73.31 Aligned_cols=111 Identities=20% Similarity=0.167 Sum_probs=94.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..+++++++.... .+......+..+++.++...|++++|++++++++...+.. .+++
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~ 126 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRI 126 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchH
Confidence 45566777888999999999999998876543 3345567788899999999999999999999999987754 3467
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
..+..+..+|.++..+|++++|..++++|+++.+.
T Consensus 127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999998764
No 53
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=1.7e-06 Score=81.39 Aligned_cols=130 Identities=10% Similarity=0.028 Sum_probs=103.7
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+......|++++|+..+++++.+... ..+....+.+..+++.+|..+|++++|+.++++++..++.. +.+++..+.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~ 197 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLT--GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVK 197 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCC--CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHH
Confidence 344456778999999999999875322 22223456778999999999999999999999999988764 558888999
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
.++++|.++..+|++++|+.++++|+++.... .+++....+...+..+...+.
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g 250 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999988765 345555666666666665555
No 54
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.56 E-value=1.1e-06 Score=81.15 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..++..+..++..|++++|+..++++++ ..|.++....++..++.+|...|+|++|+..+++++..+ |.+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----p~~ 85 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFT-----YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-----QID 85 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGG-----GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----CCC
Confidence 4556677888899999999999988865 357777778899999999999999999999999988854 567
Q ss_pred hHHHHHHHHHHHHhhh--------cCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829 388 PLLGLQYYTCGKLEWF--------LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 440 (455)
Q Consensus 388 p~~~~~l~~La~l~~~--------~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~ 440 (455)
|.....++.+|.++.. +|++++|+..++++++.. |+++........+.
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~ 141 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIR 141 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHH
Confidence 7888899999999999 999999999999999853 77777776654443
No 55
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=2.5e-06 Score=67.17 Aligned_cols=111 Identities=23% Similarity=0.208 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
+..+...+..+...|++++|+..+++++.. .|.+ ..+...++.++...|++++|+.++++++... +.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~ 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-----PD 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----cc
Confidence 345566677788899999999999998764 2333 4567789999999999999999999988752 33
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 438 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~ 438 (455)
+ ...++.+|.++..+|++++|...+++++++ +|+++.....+..
T Consensus 71 ~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~ 114 (118)
T 1elw_A 71 W---GKGYSRKAAALEFLNRFEEAKRTYEEGLKH-----EANNPQLKEGLQN 114 (118)
T ss_dssp C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHH
T ss_pred c---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----CCCCHHHHHHHHH
Confidence 4 456889999999999999999999999874 5666655444433
No 56
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.54 E-value=1e-06 Score=82.95 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..+...+..+...|++++|+..++++++.... .+..++..+.+..+++.+|..+|+|++|+.++++++.+.+.. ..+
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~ 232 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEA-LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSM 232 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcH
Confidence 34556677778899999999999999987544 334667778899999999999999999999999999988754 456
Q ss_pred hHHHHHHHHHHHHhhhcCC-cHHHHHHHHHHHHhchhc
Q 012829 388 PLLGLQYYTCGKLEWFLGD-TENAIKSMTEAVEILRIT 424 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~-~~eA~~~l~~A~~i~~~~ 424 (455)
+..+..++++|.++..+|+ +++|+.++++|+.+.+..
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999996 599999999999999865
No 57
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.53 E-value=2.3e-06 Score=83.79 Aligned_cols=130 Identities=14% Similarity=0.176 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc--------cCCccccHHHHHHHHHHHHHhcccHHHHHHH
Q 012829 300 IKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL--------YHPFSVNLMQTREKLIKILMELEDWKEALAY 371 (455)
Q Consensus 300 ~~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~--------l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~ 371 (455)
.......+..+...+..+...|++++|+..|++++++.... ....++....++.+++.+|..+|+|++|+++
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 34445566777888889999999999999999998853321 0113455677889999999999999999999
Q ss_pred HHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 372 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 372 ~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
+++++.+ +|..+..++.+|.++..+|++++|+..|++|+++ .|+++.+...+..+...
T Consensus 296 ~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-----~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 296 CLEALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHH
Confidence 9999984 2444677999999999999999999999999986 36666655554444443
No 58
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=98.53 E-value=7e-08 Score=96.82 Aligned_cols=89 Identities=20% Similarity=0.235 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHhhhhccccccccCCCCcceeeecccccccCCCCCCCc---EEEEe--------CCEEEEEEecccCCCC
Q 012829 147 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNA---VLVFE--------GRLAVVRAVQHVPKGA 215 (455)
Q Consensus 147 ~~~~~~i~~~~~~~~~N~~~i~~~~~~~~g~~lyp~~s~~NHSC~PN~---~~~~~--------~~~~~v~a~r~I~~Ge 215 (455)
.++.+.+.-.++.+.+.+|...+ ..+.+|.|.+.|+||||.||. .+.++ ++.++++|.++|++||
T Consensus 158 ~~t~~~f~wA~~~v~SRaf~~~~----~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Ge 233 (440)
T 2h21_A 158 PVTLDDFFWAFGILRSRAFSRLR----NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGE 233 (440)
T ss_dssp CCCHHHHHHHHHHHHHHCBCCC-------CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTS
T ss_pred CCCHHHHHHHHHHhcccceeccC----CCceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCC
Confidence 35677788888888888886532 236799999999999999874 44433 3468999999999999
Q ss_pred eeEEeecCCCCCHHHHHHHHhccCCeeee
Q 012829 216 EVLISYIETAGSTMTRQKALKEQYLFTCT 244 (455)
Q Consensus 216 Ei~isY~~~~~~~~~R~~~L~~~y~F~C~ 244 (455)
||+|||++.. + ...|...|||...
T Consensus 234 ei~~sYG~~~-~----N~~LL~~YGFv~~ 257 (440)
T 2h21_A 234 QVYIQYDLNK-S----NAELALDYGFIEP 257 (440)
T ss_dssp BCEECSCTTC-C----HHHHHHHSSCCCS
T ss_pred EEEEeCCCCC-C----HHHHHHhCCCCcC
Confidence 9999999862 2 1456679999754
No 59
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=1.5e-06 Score=81.88 Aligned_cols=114 Identities=19% Similarity=0.152 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc-HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
+..+...+..+...|++++|+..+++++++.... + .+.. ...+..+++.+|..+|+|++|+.++++++.+... ..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~-~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~ 230 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-H-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--IN 230 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-C-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-C-ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cC
Confidence 3445566777888999999999999999775432 2 2222 3378899999999999999999999999998753 45
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHH-HHHHHHHHHhchhc
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENA-IKSMTEAVEILRIT 424 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA-~~~l~~A~~i~~~~ 424 (455)
++..++..++++|.++..+|++++| ..++++|+.+.+..
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 6667889999999999999999999 88899999998765
No 60
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.50 E-value=2.5e-06 Score=83.36 Aligned_cols=132 Identities=10% Similarity=0.091 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
+......+..+...|++++|+..+++++++.... +...+..+.+..+++.+|...|+|++|++++++++.+.+.. ++
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~ 217 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QN 217 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CC
Confidence 3445566777788999999999999999876542 22234678889999999999999999999999999988765 34
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 444 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~ 444 (455)
.+..+..+++||.++..+|++++|+.++++|+++.+..- +|....+...|..+..
T Consensus 218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV---PDLLPKVLFGLSWTLC 272 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC---ChhHHHHHHHHHHHHH
Confidence 557889999999999999999999999999999988763 3333455555555543
No 61
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.50 E-value=2e-06 Score=83.96 Aligned_cols=113 Identities=11% Similarity=0.013 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
+......+..+...|++++|+..+++++++.... ........++.+|+.+|..+|++++|+.++++++.+.+.. .
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~ 256 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---V 256 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---C
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---C
Confidence 3445566777888999999999999999876543 2344677889999999999999999999999999988876 4
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
+|..+..++++|.++..+|++++|..++++|+++....
T Consensus 257 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 257 PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 45557889999999999999999999999999987765
No 62
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.49 E-value=1.7e-06 Score=72.94 Aligned_cols=110 Identities=10% Similarity=-0.072 Sum_probs=88.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
+..|..+...|++++|+..+++++++ +|.-..++..++.+|...|++++|+.++++++.+ .|.++
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-- 99 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINV--------QERDPKAHRFLGLLYELEENTDKAVECYRRSVEL-----NPTQK-- 99 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----CCCCH--
Confidence 45577788899999999999999875 2334567888999999999999999999999884 24454
Q ss_pred HHHHHHHHHHhhhcCCcHHHHH-HHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIK-SMTEAVEILRITHGTNSPFMKELILKLEE 441 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~-~l~~A~~i~~~~~G~~hp~~~~~~~~l~~ 441 (455)
..++++|.++...|++++|.. ++++|+++ -|+||.+..+...|-+
T Consensus 100 -~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 100 -DLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPGSPAVYKLKEQLLD 145 (150)
T ss_dssp -HHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHH
Confidence 568999999999999987655 56899874 5899987776665543
No 63
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.49 E-value=4e-06 Score=78.94 Aligned_cols=106 Identities=12% Similarity=-0.067 Sum_probs=88.1
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 393 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 393 (455)
+..+...|++++|+..+++++++.... + +......++.+++.+|..+|++++|+.++++++.++... .+....+..
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~ 119 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKA-G-NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANF 119 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 344567899999999999999886543 2 234567889999999999999999999999999988653 234456788
Q ss_pred HHHHHHHhhhc-CCcHHHHHHHHHHHHhchh
Q 012829 394 YYTCGKLEWFL-GDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 394 l~~La~l~~~~-g~~~eA~~~l~~A~~i~~~ 423 (455)
+.++|.++... |++++|+.++++|+++...
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 99999999996 9999999999999998764
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.48 E-value=1.4e-06 Score=92.65 Aligned_cols=92 Identities=21% Similarity=0.233 Sum_probs=46.4
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
+.+..+...|++++|+..|++++++ ++....++.+|+.+|..+|++++|++++++++++ +|..+
T Consensus 48 nLg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~ 111 (723)
T 4gyw_A 48 NLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFA 111 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 3444444555555555555555443 2223344555555555555555555555555543 12223
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
..+++||.++..+|++++|+..+++|++
T Consensus 112 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 112 DAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555555555555554
No 65
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.46 E-value=2e-06 Score=86.26 Aligned_cols=117 Identities=10% Similarity=0.056 Sum_probs=98.4
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccC-CccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYH-PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~-~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
.+......|++++|++.+++++++.....+ ..++..+.+..+++.+|..+|++++|..++++++.+.+.+.++.++..+
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 466677889999999999999987654433 3467788899999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhhhc--CCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829 392 LQYYTCGKLEWFL--GDTENAIKSMTEAVEILRITHGTNSPFMKE 434 (455)
Q Consensus 392 ~~l~~La~l~~~~--g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~ 434 (455)
..+.++|..+... +++++|+..+++|+++ .|++|.+..
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~ 176 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTS 176 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 8888888766554 5689999999999986 477775543
No 66
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=3.5e-06 Score=79.27 Aligned_cols=128 Identities=10% Similarity=0.011 Sum_probs=97.5
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH-H
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-G 391 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~ 391 (455)
.+......|++++|+..+++++.+..... +....+.+..+++.+|..+|+|++|+.++++++.+.+... ..+.. .
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~ 196 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDV 196 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchH
Confidence 45556677899999999999887543322 2233567889999999999999999999999999887543 23333 3
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 446 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~ 446 (455)
..++++|.++..+|++++|+.++++|+++... ..++.....+...+..+...+
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~~~~~~~~~~lg~~y~~~ 249 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBCSSHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHc
Confidence 78999999999999999999999999998743 345555566666665554443
No 67
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.46 E-value=8.8e-06 Score=68.55 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 384 (455)
.....+...+..+...|++++|+..+++++++. |. -..+...++.++...|+|++|+.++.+++...
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----- 77 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-----PS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD----- 77 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 345566777888889999999999999988752 22 25667889999999999999999999988852
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 433 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~ 433 (455)
|.....++.+|.++..+|++++|+.++++|+++ .|+++...
T Consensus 78 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~ 118 (166)
T 1a17_A 78 ---KKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAK 118 (166)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHH
T ss_pred ---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHH
Confidence 333456899999999999999999999999975 45555443
No 68
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.45 E-value=3.2e-06 Score=74.02 Aligned_cols=115 Identities=10% Similarity=0.039 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
...+...+..+...|++++|+..+++++.+... .+........+..+++.++...|++++|..++++++...+.. .+
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 142 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DD 142 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cc
Confidence 344556677788899999999999999887652 333344677888999999999999999999999999886643 23
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
....+..+..+|.++..+|++++|+.++++|+++.+..
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 44567888999999999999999999999999998776
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.45 E-value=4.5e-06 Score=81.87 Aligned_cols=133 Identities=12% Similarity=0.070 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 383 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 383 (455)
.....+...+..+...|++++|+..+++++++ .|.++ ....++..++.+|...|++++|+.++++++...+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 119 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM- 119 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence 34555667788888999999999999999875 34444 345788899999999999999999999999988776
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829 384 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 446 (455)
Q Consensus 384 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~ 446 (455)
.++|..+..++.+|.++...|++++|+.++++|+++.... .+++....+...+..+....
T Consensus 120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHH
T ss_pred -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHc
Confidence 4678899999999999999999999999999999998776 35555555665555554443
No 70
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.44 E-value=6.9e-07 Score=71.70 Aligned_cols=102 Identities=12% Similarity=0.067 Sum_probs=78.8
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829 320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 399 (455)
Q Consensus 320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 399 (455)
.|++++|+..+++++++ ++.++....++.+++.+|..+|+|++|+.++++++.. .|++ ...++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~ 69 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNH---QALRVFYAM 69 (117)
T ss_dssp ----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---hHHHHHHHH
Confidence 57888999999888753 2335677788999999999999999999999999875 2344 456889999
Q ss_pred HhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829 400 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 439 (455)
Q Consensus 400 l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l 439 (455)
++..+|++++|+..+++|+++ .|++|.+......+
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAE-----TSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH-----HCCCHHHHHTHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHH
Confidence 999999999999999999875 36666655544443
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.44 E-value=2.7e-06 Score=78.35 Aligned_cols=126 Identities=8% Similarity=0.068 Sum_probs=101.5
Q ss_pred HHHHHHHhhh--------cCChHHHHHHHHHHHHHhhcccCCccccHHHHH--------------HHHHHHHHhcccHHH
Q 012829 310 LSKKTLALTS--------CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--------------EKLIKILMELEDWKE 367 (455)
Q Consensus 310 l~~~a~~~~~--------~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~--------------~~L~~~~~~~g~~~~ 367 (455)
+...+..+.. .|++++|+..++++++. .|.++....+. ..++.+|...|+|++
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 4445666666 88999999999988764 35566655555 788999999999999
Q ss_pred HHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhc----------CCcHHHHHHHHHHHHhchhccCCCChhHHHHHH
Q 012829 368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL----------GDTENAIKSMTEAVEILRITHGTNSPFMKELIL 437 (455)
Q Consensus 368 A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~----------g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~ 437 (455)
|+..+++++..+ |+++.....++.+|.++..+ |++++|+..++++++.. |++|.+.+...
T Consensus 167 A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~ 236 (261)
T 3qky_A 167 AAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEE 236 (261)
T ss_dssp HHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHH
T ss_pred HHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHH
Confidence 999999988743 46666778899999999877 88899999999998754 89999999998
Q ss_pred HHHHHHHHHhhhh
Q 012829 438 KLEEAQAEASYKL 450 (455)
Q Consensus 438 ~l~~~~~~~~~~~ 450 (455)
.|..+..++..-.
T Consensus 237 ~l~~~~~~~~~~~ 249 (261)
T 3qky_A 237 LYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 8888877765544
No 72
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.43 E-value=7.2e-06 Score=65.70 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
...+...+..+...|++++|+..+++++.. .|.+ ..+...++.++...|++++|+.++.+++.. .+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~ 78 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICI-----DPA 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----Ccc
Confidence 445556677778889999999999998765 2222 556788999999999999999999998874 233
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 432 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~ 432 (455)
+ ...++.+|.++...|++++|+..+++|+++ .|+++..
T Consensus 79 ~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~ 116 (131)
T 2vyi_A 79 Y---SKAYGRMGLALSSLNKHVEAVAYYKKALEL-----DPDNETY 116 (131)
T ss_dssp C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHH
T ss_pred C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CccchHH
Confidence 3 456899999999999999999999999986 4555543
No 73
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.42 E-value=4.1e-06 Score=67.68 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..+...+..+...|++++|+..++++++. .|.+ ..+...++.++...|++++|+.++++++... +.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~ 83 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLE-----PTF 83 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCc
Confidence 34455666777899999999999888753 2333 5667889999999999999999999988742 233
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...++.+|.++..+|++++|+.++++++++
T Consensus 84 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 84 ---IKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 456899999999999999999999999986
No 74
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.40 E-value=1.5e-06 Score=70.48 Aligned_cols=94 Identities=10% Similarity=-0.080 Sum_probs=77.4
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
+..+..+...|++++|+..+++++++ +|.-..++..++.++...|++++|+..+++++.+ .|.++
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~-- 85 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI-- 85 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH--
Confidence 34566677889999999999999874 3333567788999999999999999999998884 34454
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..++.||.++..+|++++|+..+++|+++
T Consensus 86 -~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 86 -AVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46889999999999999999999999874
No 75
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.40 E-value=7.8e-06 Score=72.77 Aligned_cols=107 Identities=11% Similarity=0.154 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHH----------------HHHHHHhcccHHHHHH
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREK----------------LIKILMELEDWKEALA 370 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~----------------L~~~~~~~g~~~~A~~ 370 (455)
+..+...+..+...|++++|+..+++++++. |.-..++.. ++.+|...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455667788889999999999999988752 222333444 9999999999999999
Q ss_pred HHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829 371 YCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 434 (455)
Q Consensus 371 ~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~ 434 (455)
.+++++... |.+ ...++++|.++..+|++++|+..+++|+++ .|+++...-
T Consensus 76 ~~~~al~~~-----p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~ 126 (208)
T 3urz_A 76 FYKELLQKA-----PNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNLAANI 126 (208)
T ss_dssp HHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred HHHHHHHHC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHH
Confidence 999998842 334 466899999999999999999999999985 577765543
No 76
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.39 E-value=5.2e-06 Score=74.85 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=94.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.+...+..+...|++++|+..+++++.. .|.++....++..++.+|...|+|++|+..+++++..+ |.++
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~~~ 75 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP 75 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCC
Confidence 4556677788899999999999998763 45666677888999999999999999999999988743 4677
Q ss_pred HHHHHHHHHHHHhhh------------------cCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWF------------------LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 389 ~~~~~l~~La~l~~~------------------~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
.....++.+|.++.. +|++++|+..++++++. -|+++...+....+..+.
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHH
Confidence 777778888888775 57889999999988774 377887776665555443
No 77
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.38 E-value=1.5e-06 Score=87.18 Aligned_cols=93 Identities=9% Similarity=-0.097 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC-CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829 347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 425 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~ 425 (455)
..+.+++.|+.++..+|++++|++++++++++.+...+ ..||..+..+.++|.+|..+|++++|+.++++|++|.....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566788999999999999999999999999998887 56899999999999999999999999999999999999988
Q ss_pred CCCChhHHHHHHHH
Q 012829 426 GTNSPFMKELILKL 439 (455)
Q Consensus 426 G~~hp~~~~~~~~l 439 (455)
++.++...++...+
T Consensus 129 ~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 129 SPYRIESPELDCEE 142 (472)
T ss_dssp CSSCCCCHHHHHHH
T ss_pred cccchhhHHHHHHH
Confidence 88777665555443
No 78
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.38 E-value=1.1e-05 Score=75.93 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=102.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
.+...+..+...|++++|+..++++++. .|.++ ....+...++.++...|++++|+.++++++...+.. .++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~ 79 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQ 79 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--ccc
Confidence 4455677788899999999999999875 34443 345788899999999999999999999999988766 467
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
|..+..+..+|.++...|++++|+.++++|+++.... .+.+....+...+..+...
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999988775 3344444455555554443
No 79
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.37 E-value=7.4e-06 Score=78.96 Aligned_cols=115 Identities=13% Similarity=0.126 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccC-------CccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYH-------PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 378 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~-------~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 378 (455)
....+...+..+...|++++|+..|++++.+...... ...+....++.+++.+|..+|+|++|+.++++++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455667788888999999999999999876422100 011233578889999999999999999999999985
Q ss_pred HHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829 379 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 433 (455)
Q Consensus 379 ~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~ 433 (455)
. |.....++++|.++..+|++++|+..+++|+++ .|+++.+.
T Consensus 226 ~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~a~ 267 (336)
T 1p5q_A 226 D--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAK 267 (336)
T ss_dssp C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHH
T ss_pred C--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCCHHHH
Confidence 2 334567899999999999999999999999986 45555443
No 80
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.36 E-value=9.6e-06 Score=78.95 Aligned_cols=135 Identities=19% Similarity=0.132 Sum_probs=109.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..+++++.+.... ..+.....+...++.+|...|++++|+.++++++.+.... .+++
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~ 304 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRI 304 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcH
Confidence 44556777788999999999999998875442 3455667888999999999999999999999999988765 3467
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 449 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~ 449 (455)
..+..+..+|.++..+|++++|+.++++|+++.... .+.+....+...|.++...+...
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHh
Confidence 778899999999999999999999999999998776 34455666777777776666544
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.35 E-value=8.5e-06 Score=79.06 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=95.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
+...+..+...|++++|+..+++++.+.... ........+..+++.++...|++++|..++++++...+...++.+|.
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 3445566677899999999999998875442 22234466778899999999999999999999999999888888899
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
.+..+.++|.++...|++++|+.++++|+++....
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999987654
No 82
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.34 E-value=4.6e-06 Score=80.56 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=88.3
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..+...|++++|+..+++++++ .|.+ ..++..++.+|...|++++|+.++++++.. +|..
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~ 280 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTV-----RPED---YSLWNRLGATLANGDRSEEAVEAYTRALEI--------QPGF 280 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc
Confidence 34456667789999999999999875 2333 557788999999999999999999999885 3444
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH----HHHHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM----KELILKLEEAQA 444 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~----~~~~~~l~~~~~ 444 (455)
...++++|.++..+|++++|+.++++|+++.....|+.|+.. ..+...|..+..
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999888876544 334444444433
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.33 E-value=4.5e-06 Score=88.74 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
+..+.+.+..+..+|++++|+..|++++++ ++....++.+|+.+|..+|++++|++++++++++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-------- 72 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-------- 72 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 445666778888999999999999999876 3445678899999999999999999999999885
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 432 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~ 432 (455)
+|..+..+++||.++..+|++++|++.+++|+++ .|+++..
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----~P~~~~a 113 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----NPAFADA 113 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence 2444667999999999999999999999999975 4555543
No 84
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.33 E-value=1.2e-05 Score=78.13 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=102.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
.+...+..+...|++++|+..+++++++ .|.++ ....++..++.+|...|++++|+.++++++...+.. .++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~ 83 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQ 83 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccc
Confidence 4455677778899999999999999875 34444 346788999999999999999999999999988766 467
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
|..+..+..+|.++...|++++|+.++++|+++..... +.+....+...+..+...
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHA 139 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999988762 334444455555544433
No 85
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=1.8e-06 Score=87.54 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=86.8
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
..|..+...|++++|+..+++++++ ++....++.+++.+|..+|+|++|++++++++.+ +|..+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~ 74 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYI 74 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCH
Confidence 3455567789999999999999876 3334677889999999999999999999999885 45556
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 439 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l 439 (455)
..++++|.++..+|++++|++.+++|+++ .|+++.....+..+
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence 77999999999999999999999999986 46666554444433
No 86
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.31 E-value=1e-05 Score=79.29 Aligned_cols=131 Identities=11% Similarity=0.051 Sum_probs=104.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.+...+..+...|++++|+..+++++++.... ........++..++.+|...|++++|+.++++++...... .+++
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~ 300 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GERE 300 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHH
Confidence 44556777788999999999999998876542 2345566788899999999999999999999999988765 4566
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
..+..+..+|.++..+|++++|+.++++|+++.... .+++....+...|..+...
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARACWSLGNAHSA 355 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999988776 3344445555555555433
No 87
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.31 E-value=2.4e-05 Score=62.00 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=79.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
....+..+...|++++|+..+++++... |.+ ..+...++.++...|++++|+.++++++.. .+.+
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~-- 76 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN-- 76 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCcc--
Confidence 3445666778899999999999887642 222 456778999999999999999999998864 2233
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 432 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~ 432 (455)
...++.+|.++...|++++|+.++++++++ .|+++..
T Consensus 77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~ 113 (125)
T 1na0_A 77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEA 113 (125)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHH
Confidence 456789999999999999999999999875 3555543
No 88
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.29 E-value=9.8e-06 Score=76.85 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=85.9
Q ss_pred HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHH
Q 012829 315 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 394 (455)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l 394 (455)
..+...|++++|+..+++++++.... + +....+.++.+++.+|..+|++++|+.++++++.++... .+....+..+
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~ 119 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANN-R-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMAL 119 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 44566788888888888888775443 2 234556778888888888889999999888888887642 2334567788
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 395 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 395 ~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
.++|.++.. |++++|+.++++|+++.... | +.+....++..+..+.
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~-~~~~~~~~~~~lg~~~ 165 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENE-E-RLRQAAELIGKASRLL 165 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C-ChhHHHHHHHHHHHHH
Confidence 888888888 88889998888888887653 2 1222334444444443
No 89
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.29 E-value=2.1e-05 Score=73.66 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..+...+..+...|++++|+..+++++++ .|. ...++.+++.+|..+|+|++|+.++++++.+ +
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~ 68 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR-----NPL---VAVYYTNRALCYLKMQQPEQALADCRRALEL--------D 68 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------C
Confidence 34556677788899999999999999875 233 3566788999999999999999999999874 3
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
|.....++.+|.++..+|++++|+..+++|+++--
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34456789999999999999999999999998654
No 90
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.28 E-value=1.5e-05 Score=75.64 Aligned_cols=112 Identities=10% Similarity=0.022 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..+.+.+..+...|++++|+..+++++++.... + .......++.+++.+|.. |++++|+.++++++.+++.. ...
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~ 151 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-G-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERL 151 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CCh
Confidence 344555666777899999999999998876432 1 123456788899999988 99999999999999988752 233
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
+..+..+.++|.++..+|++++|+.++++|+++....
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 4567889999999999999999999999999987654
No 91
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.26 E-value=1.9e-05 Score=74.14 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=104.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..+++++.+.... ........+...++.++...|++++|..++++++.+.... .+++
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~ 260 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRA 260 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchh
Confidence 34455666778899999999999998875442 3345567788999999999999999999999999988764 4567
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 446 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~ 446 (455)
..+..+..+|.++..+|++++|..++++|+++..... +.+....+...+..+....
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHc
Confidence 7788999999999999999999999999999887652 2444455555565554443
No 92
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.24 E-value=2e-05 Score=79.40 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccC-------CccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYH-------PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~-------~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
.....+...+..++..|++++|+..|++++++....-. ..+.....++.+++.+|..+|+|++|+.++.+++.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34556667788888999999999999999886422100 01223467888999999999999999999999998
Q ss_pred hHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829 378 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 434 (455)
Q Consensus 378 ~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~ 434 (455)
+. |.....++++|.++..+|++++|+..|++|+++ .|+++....
T Consensus 346 ~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-----~P~~~~a~~ 389 (457)
T 1kt0_A 346 LD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQNKAARL 389 (457)
T ss_dssp HS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----C----CHHH
T ss_pred cC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 53 333567999999999999999999999999985 355554433
No 93
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.23 E-value=1.2e-05 Score=69.49 Aligned_cols=92 Identities=17% Similarity=0.104 Sum_probs=73.4
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+......++++.+...+.++..+ .|.+ ..+...++.+|..+|++++|++.+++++.. +|....
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~-----~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~ 142 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIAL-----NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIR 142 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhh
Confidence 345556677888888888777654 2333 456778899999999999999999998875 234456
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.++++|.++..+|++++|+..+++|+++
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 7899999999999999999999999985
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.21 E-value=1.8e-05 Score=74.40 Aligned_cols=112 Identities=15% Similarity=0.085 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-ccHHHHHHHHHHhhhhHHhhcCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
...+.+.+..+...|++++|+..+++++++.... + .......++.+++.+|... |++++|+.++++++.+....-
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g-~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~-- 152 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-G-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ-- 152 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--
Confidence 4455667777888899999999999999876432 1 2233467888999999996 999999999999999876321
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
.++..+..+.++|.++..+|++++|+.++++|+++..
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 2234467799999999999999999999999998653
No 95
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.21 E-value=3.4e-05 Score=66.17 Aligned_cols=119 Identities=7% Similarity=0.014 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHH-HHhcccH--HHHHHHHHHhhhhHHhhcC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI-LMELEDW--KEALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~-~~~~g~~--~~A~~~~~~~l~~~~~~~g 384 (455)
......+..+...|++++|+..+++++++. |.+ ..+...++.+ +...|++ ++|+.++++++.. .
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-----~ 111 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GEN---AELYAALATVLYYQASQHMTAQTRAMIDKALAL-----D 111 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-----C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-----C
Confidence 344556777788999999999999988753 333 4456778888 8899999 9999999998874 2
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
|.+ ...++.+|.++...|++++|+..+++|+++ .|+++....++..++.++....
T Consensus 112 p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~i~~~~~~~~ 166 (177)
T 2e2e_A 112 SNE---ITALMLLASDAFMQANYAQAIELWQKVMDL-----NSPRINRTQLVESINMAKLLQR 166 (177)
T ss_dssp TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCccHHHHHHHHHHHHHhcC
Confidence 344 356889999999999999999999999875 4566667777777777655443
No 96
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.20 E-value=3.4e-05 Score=73.38 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
+......+..+...|++++|+..+++++... |.++ ....+...++.++...|++++|+.++++++..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 301 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM------- 301 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 3344556777888999999999999987653 3333 34466778999999999999999999999885
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
+|.....++.+|.++...|++++|+..+++|+++ .|+++.....+..+.....+
T Consensus 302 -~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 302 -EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-----NENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHH
Confidence 2333457899999999999999999999999985 57887776666666555443
No 97
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.19 E-value=1.2e-05 Score=62.55 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=75.1
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+..+...|++++|+..+++++++. |. ...+...++.++...|++++|+.++++++... +. .....
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~-~~~~~ 77 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-----PE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-----ED-EYNKD 77 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-----CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----CC-TTCHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-----cC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----cc-cchHH
Confidence 3555678899999999999988752 22 24567789999999999999999999988742 22 01345
Q ss_pred HHHHHHHHhhhc-CCcHHHHHHHHHHHHh
Q 012829 393 QYYTCGKLEWFL-GDTENAIKSMTEAVEI 420 (455)
Q Consensus 393 ~l~~La~l~~~~-g~~~eA~~~l~~A~~i 420 (455)
.++.+|.++..+ |++++|+.++++++..
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 689999999999 9999999999998764
No 98
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.18 E-value=1.4e-05 Score=71.71 Aligned_cols=97 Identities=14% Similarity=0.039 Sum_probs=78.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHhhh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----------EDWKEALAYCQLTIP 377 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-----------g~~~~A~~~~~~~l~ 377 (455)
.....+..+...|++++|+..+++++++ +|....++.+++.++... |++++|+..+++++.
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 112 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence 3455667778899999999999999875 233456678899999999 999999999999888
Q ss_pred hHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 378 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 378 ~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
.. |.+ ...++++|.++..+|++++|+..+++|+++-
T Consensus 113 ~~-----P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 113 VN-----PRY---APLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hC-----ccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 52 334 3557888999999999999999999988864
No 99
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.16 E-value=1.2e-05 Score=65.47 Aligned_cols=88 Identities=14% Similarity=0.102 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccC
Q 012829 347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 426 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G 426 (455)
..+.+..+|+..+...|+|++|++++.+++.+ +|..+..++++|.++..+|++++|+..+++|+++-... .
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~ 76 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-R 76 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-c
Confidence 44566778999999999999999999999985 34445679999999999999999999999999976543 4
Q ss_pred CCChhHHHHHHHHHHHH
Q 012829 427 TNSPFMKELILKLEEAQ 443 (455)
Q Consensus 427 ~~hp~~~~~~~~l~~~~ 443 (455)
..++....+...+..+.
T Consensus 77 ~~~~~~a~~~~~lg~~~ 93 (127)
T 4gcn_A 77 ADYKLIAKAMSRAGNAF 93 (127)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45555555555444443
No 100
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.15 E-value=1e-05 Score=78.07 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc--------------HHHHHHHHHHHHHhcccHHHHH
Q 012829 304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN--------------LMQTREKLIKILMELEDWKEAL 369 (455)
Q Consensus 304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~--------------~~~~~~~L~~~~~~~g~~~~A~ 369 (455)
...+..+...+..++..|++++|+..|++++.+.. .+.. ...++.+++.+|..+|+|++|+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-----~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~ 250 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG-----DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI 250 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC-----HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-----cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 44556677788889999999999999999887532 1110 1137789999999999999999
Q ss_pred HHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829 370 AYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 439 (455)
Q Consensus 370 ~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l 439 (455)
.++++++... |.-...++++|.++..+|++++|+..|++|+++ .|+++.+...+..+
T Consensus 251 ~~~~~al~~~--------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-----~p~~~~a~~~L~~l 307 (338)
T 2if4_A 251 GHCNIVLTEE--------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-----APDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHH
Confidence 9999998742 333567999999999999999999999999875 35565555444443
No 101
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.15 E-value=7.3e-05 Score=72.36 Aligned_cols=126 Identities=13% Similarity=0.056 Sum_probs=99.4
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc-ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
.-.+......|++++|+..+++++... ++.+ .....+...++.++...|++++|..++++++...+.. | +...
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~ 91 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-D-VWHY 91 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-T-CHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-C-cHHH
Confidence 334556677899999999999887643 2332 2355677889999999999999999999999987763 2 3345
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
.+..+.++|.++..+|++++|+.++++|+++.....++.+|....+...+..+
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence 67788999999999999999999999999999988888777666655555544
No 102
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.15 E-value=3.2e-05 Score=74.37 Aligned_cols=123 Identities=17% Similarity=0.156 Sum_probs=94.2
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
....+..+...|++++|+..+++++.+ .|. ...++..++.++...|++++|+.++++++.. +|.
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~ 283 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSV-----RPN---DYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPG 283 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 344566667889999999999998875 233 3457788999999999999999999999875 234
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC---ChhHHHHHHHHHHHHHHHhh
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN---SPFMKELILKLEEAQAEASY 448 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~---hp~~~~~~~~l~~~~~~~~~ 448 (455)
....++.+|.++..+|++++|+.++++|+++.....|+. ++...++...|..+...+..
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 456789999999999999999999999999887765443 45556666677666655543
No 103
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.14 E-value=6.8e-05 Score=67.78 Aligned_cols=106 Identities=9% Similarity=0.073 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
++..+...+..+...|++++|+..++++++.. .+ ..++..++.++...|++++|+.++++++...... ++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~ 73 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH------KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-RA 73 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-cc
Confidence 34566677888889999999999999998763 12 3567789999999999999999999999977643 45
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
.++..+..++.+|.++...|++++|+.++++|+++.
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 109 (258)
T 3uq3_A 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH 109 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 667778999999999999999999999999999853
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.14 E-value=4.4e-06 Score=70.35 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=73.0
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
...+|++++|+..++++.. .++.-......|+.+|...|+|++|++++++++.+- |++ ...++.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-----p~~---~~a~~~ 70 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-----ERD---PKAHRF 70 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHH
T ss_pred HHHcChHHHHHHHHHHhcc--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHH
Confidence 3455677777777666543 234444456789999999999999999999998852 344 456999
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829 397 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 432 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~ 432 (455)
+|.++..+|++++|+..+++|+++ .|+++.+
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 101 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVEL-----NPTQKDL 101 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHh-----CCCCHHH
Confidence 999999999999999999999985 4666543
No 105
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.14 E-value=2.7e-05 Score=69.79 Aligned_cols=115 Identities=19% Similarity=0.116 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc----cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV----NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 383 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~----~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 383 (455)
......+..+...|++++|+..+++++++. |.++ .+..++..++.++...|++++|+.++++++..
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----- 146 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----- 146 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-----
Confidence 344556777888999999999999998753 3443 23467888999999999999999999999884
Q ss_pred CCCChH--HHHHHHHHHHHhhhcCCc---------------------------HHHHHHHHHHHHhchhccCCCChhHHH
Q 012829 384 PQFHPL--LGLQYYTCGKLEWFLGDT---------------------------ENAIKSMTEAVEILRITHGTNSPFMKE 434 (455)
Q Consensus 384 g~~hp~--~~~~l~~La~l~~~~g~~---------------------------~eA~~~l~~A~~i~~~~~G~~hp~~~~ 434 (455)
+|. ....++++|.++..+|+. ++|+.++++|+++ .|+++.+..
T Consensus 147 ---~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~ 218 (228)
T 4i17_A 147 ---TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-----SPNRTEIKQ 218 (228)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred ---CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHH
Confidence 455 567788889888888877 7788888888774 688887766
Q ss_pred HHHHHH
Q 012829 435 LILKLE 440 (455)
Q Consensus 435 ~~~~l~ 440 (455)
++..+.
T Consensus 219 ~l~~i~ 224 (228)
T 4i17_A 219 MQDQVK 224 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 106
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.12 E-value=2.2e-05 Score=62.32 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhc
Q 012829 325 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL 404 (455)
Q Consensus 325 ~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~ 404 (455)
+++..++++++. .|.+ ..++..++.+|...|++++|+.++++++... |.....++.+|.++..+
T Consensus 3 ~a~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ-----GTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------PTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT-----TCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHc
Confidence 455566666542 2333 4577889999999999999999999998742 33345689999999999
Q ss_pred CCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 405 GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 405 g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
|++++|+..+++|+++.... | +.....++...|..+...
T Consensus 67 g~~~~A~~~~~~al~~~~~~-~-~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQSR-G-DQQVVKELQVFLRRLARE 105 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccc-c-cHHHHHHHHHHHHHhccc
Confidence 99999999999999875443 2 222334455555554443
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.11 E-value=2.2e-05 Score=69.33 Aligned_cols=105 Identities=11% Similarity=-0.023 Sum_probs=84.1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc-----
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY----- 383 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~----- 383 (455)
.....+..+...|++++|+..+++++.+. +....++.+++.+|...|++++|+.++++++......-
T Consensus 39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 110 (213)
T 1hh8_A 39 ICFNIGCMYTILKNMTEAEKAFTRSINRD--------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHH
Confidence 34556677788999999999999988752 23356788899999999999999999999887542110
Q ss_pred --C-CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 384 --P-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 384 --g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
| ..+|.....++++|.++..+|++++|+..+++|+++.
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 0 1456667889999999999999999999999999864
No 108
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.11 E-value=2.3e-05 Score=70.19 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=82.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
....+..+...|++++|+..+++++++ +|....++..++.++...|++++|+.++++++... |++
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----P~~-- 72 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-----PRY-- 72 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc--
Confidence 345566778899999999999988753 33445678889999999999999999999998742 344
Q ss_pred HHHHHHHHHHHhhhc-----------CCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829 390 LGLQYYTCGKLEWFL-----------GDTENAIKSMTEAVEILRITHGTNSPFM 432 (455)
Q Consensus 390 ~~~~l~~La~l~~~~-----------g~~~eA~~~l~~A~~i~~~~~G~~hp~~ 432 (455)
...++++|.++..+ |++++|+..+++|+++ .|+++..
T Consensus 73 -~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~ 120 (217)
T 2pl2_A 73 -LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPL 120 (217)
T ss_dssp -HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred -HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHH
Confidence 45688999999999 9999999999999986 4666544
No 109
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.10 E-value=1.2e-05 Score=77.49 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=93.1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC---C
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP---Q 385 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g---~ 385 (455)
.....+..+...|++++|+..+++++++ .| ....++..++.+|...|++++|+.++++++.......+ .
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALEL-----QP---GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 4455677778889999999999998875 22 33467788999999999999999999999998776533 3
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 428 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 428 (455)
.+|..+..+..+|.++..+|++++|...+.++++++...+|.+
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 367 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLP 367 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTCC
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCCC
Confidence 4566778899999999999999999999999999999998864
No 110
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.08 E-value=5.9e-05 Score=68.16 Aligned_cols=115 Identities=14% Similarity=0.080 Sum_probs=88.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..+++++.+. |.+ ..+...++.++...|++++|+.++++++... +.+
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~- 206 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKD-----PNF- 206 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----ccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----HHH-
Confidence 34455667778899999999999998752 233 4667889999999999999999999998742 233
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 441 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~ 441 (455)
...++.+|.++..+|++++|..++++|+++..... ..|...++...|..
T Consensus 207 --~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 207 --VRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK 255 (258)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence 46688999999999999999999999999875442 33444455555543
No 111
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.06 E-value=3.7e-05 Score=68.90 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
..+...+..+...|++++|+..+++++++.. +.+. .+...++.++...|++++|+.++++++.. +
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~ 72 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN----NQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKK--------N 72 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccC----CCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence 3456677788899999999999999987532 1222 45666999999999999999999998863 3
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
|.....++.+|.++..+|++++|+..+++|+++.
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 4456779999999999999999999999999853
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.06 E-value=6.2e-05 Score=67.66 Aligned_cols=125 Identities=9% Similarity=-0.010 Sum_probs=93.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh------------------cccHHHHHH
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME------------------LEDWKEALA 370 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~------------------~g~~~~A~~ 370 (455)
.+...+..+...|++++|+..++++++. .|.++....++..++.++.. +|++++|+.
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 4556677788899999999999998763 56677666677777777764 689999999
Q ss_pred HHHHhhhhHHhhcCCCChHHH--------------HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHH
Q 012829 371 YCQLTIPVYQRVYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI 436 (455)
Q Consensus 371 ~~~~~l~~~~~~~g~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~ 436 (455)
.+++++..+ |+++... ...+.+|.++...|++++|+..++++++.. |++|...+..
T Consensus 118 ~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~ 187 (225)
T 2yhc_A 118 DFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDAL 187 (225)
T ss_dssp HHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHH
T ss_pred HHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHH
Confidence 999887744 3444322 222678899999999999999999999854 6677777777
Q ss_pred HHHHHHHHHHhh
Q 012829 437 LKLEEAQAEASY 448 (455)
Q Consensus 437 ~~l~~~~~~~~~ 448 (455)
..+..+..++..
T Consensus 188 ~~l~~~~~~~g~ 199 (225)
T 2yhc_A 188 PLMENAYRQMQM 199 (225)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 777766555443
No 113
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.02 E-value=1.4e-05 Score=77.04 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=91.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..+++++++ ++....++.+++.+|...|++++|+.++++++.+.....++.++
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 320 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQV 320 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCccc
Confidence 3455667778889999999999999875 23336678889999999999999999999999999888877665
Q ss_pred HH----HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829 389 LL----GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 429 (455)
Q Consensus 389 ~~----~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h 429 (455)
.. +..+..||.++..+|+.+.|.....+++++++..+|.++
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~ 365 (365)
T 4eqf_A 321 PHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP 365 (365)
T ss_dssp ------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTTTCC-
T ss_pred chhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhcCCCC
Confidence 44 677889999999999999999999999999999999863
No 114
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.02 E-value=0.0001 Score=66.72 Aligned_cols=95 Identities=8% Similarity=0.036 Sum_probs=57.9
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
..+..+...|++++|+..++++++.. |. ...+...++.+|...|++++|++++++++. .+.+|...
T Consensus 76 ~la~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~ 141 (252)
T 2ho1_A 76 ALAVVFQTEMEPKLADEEYRKALASD-----SR---NARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERS 141 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-----cC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccH
Confidence 33444556667777777666665531 22 234455666667777777777777666655 23445555
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..++.+|.++...|++++|+.++++++++
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56666777777777777777777766654
No 115
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.02 E-value=8.4e-05 Score=67.31 Aligned_cols=114 Identities=12% Similarity=0.031 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
.......+..+...|++++|+..++++++.. +....++..++.+|...|++++|++++++++...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQTEMEPKLADEEYRKALASD------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------
Confidence 4445566777788999999999999988752 2235677889999999999999999999988752
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
|.....++.+|.++...|++++|+.+++++++ .+..|....+...+..+
T Consensus 102 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 102 -SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLV 150 (252)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHH
T ss_pred -cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHH
Confidence 33356688999999999999999999999987 23344444444444443
No 116
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.01 E-value=0.00015 Score=64.00 Aligned_cols=95 Identities=9% Similarity=0.021 Sum_probs=63.6
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-ccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
..+..+...|++++|+..+++++.. .|. ...+...++.++... |++++|+.++++++. .+.+|..
T Consensus 47 ~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~ 112 (225)
T 2vq2_A 47 VRAEIYQYLKVNDKAQESFRQALSI-----KPD---SAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTP 112 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHh-----CCC---ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcch
Confidence 3455556667777777777776653 122 234556677777777 777777777777665 2345555
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...++.+|.++...|++++|+.++++++++
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666777777777788888888877777764
No 117
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.99 E-value=5.4e-05 Score=69.36 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
.......+..+...|++++|+..+++++++ .| ....++..++.+|...|++++|+.++++++... +.
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~ 109 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAI-----RP---DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----PT 109 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CC---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----cc
Confidence 344455677778899999999999999875 23 334567889999999999999999999998852 23
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 430 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp 430 (455)
+ ...++.+|.++...|++++|+..+++|+++ .|+++
T Consensus 110 ~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~ 145 (275)
T 1xnf_A 110 Y---NYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDP 145 (275)
T ss_dssp C---THHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred c---cHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCh
Confidence 3 466889999999999999999999999874 45555
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.98 E-value=0.00017 Score=57.55 Aligned_cols=92 Identities=23% Similarity=0.302 Sum_probs=68.7
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+..+...|++++|+..+++++.. .|.+ ..+...++.++...|++++|+.++++++... +.+ ..
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~ 70 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL-----DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PRS---AE 70 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTC---HH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc-----CCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----CCc---hH
Confidence 455556678889999888887654 2222 4456678888888999999999888877642 233 34
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.++.+|.++...|++++|+..+.+++++
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5778899999999999999999988875
No 119
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.96 E-value=0.00012 Score=65.02 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=82.1
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH---
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL--- 389 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~--- 389 (455)
.+..+...|++++|+..+++++++ .|. -..++..++.+|...|++++|+.++++++.+. |+++.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~ 126 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK-----APN---NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-----ADNLAANI 126 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHH
Confidence 677778899999999999999875 233 35678889999999999999999999988742 33332
Q ss_pred -HHHH----------------------------HHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829 390 -LGLQ----------------------------YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 440 (455)
Q Consensus 390 -~~~~----------------------------l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~ 440 (455)
+|.. ++.+|..+..+|++++|+..+++|+++. |+. .....+..+.
T Consensus 127 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~-----P~~-~~~~~l~~i~ 200 (208)
T 3urz_A 127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF-----PST-EAQKTLDKIL 200 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS-----CCH-HHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCH-HHHHHHHHHH
Confidence 1222 2334555556678888999999988754 433 3455666666
Q ss_pred HHHHHH
Q 012829 441 EAQAEA 446 (455)
Q Consensus 441 ~~~~~~ 446 (455)
+++.++
T Consensus 201 ~~~~~~ 206 (208)
T 3urz_A 201 RIEKEV 206 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
No 120
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.96 E-value=0.00017 Score=63.61 Aligned_cols=94 Identities=9% Similarity=-0.029 Sum_probs=76.1
Q ss_pred HHHHhhhc-CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 313 KTLALTSC-GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 313 ~a~~~~~~-g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
.+..+... |++++|+..+++++. .+.++....+...++.++...|++++|+.++++++.. .+.+ .
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~ 147 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-----QPQF---P 147 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---H
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---c
Confidence 45566778 899999998888764 3455666778889999999999999999999988764 2333 4
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..++.+|.++...|++++|..++++++++
T Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 148 PAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56888999999999999999999999874
No 121
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.96 E-value=3.8e-05 Score=59.52 Aligned_cols=70 Identities=24% Similarity=0.196 Sum_probs=58.1
Q ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 346 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 346 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
|.-..++..++.+|...|+|++|+.++++++... |.++ ..++.+|.++..+|++++|+..+++|+++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-----PDYV---GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3345567889999999999999999999998742 3333 46899999999999999999999999997544
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.95 E-value=5.9e-05 Score=66.55 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
....+..+..+...|++++|+..+++++ .+ ...++.+++.+|...|++++|+.++++++...
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~-------~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------- 67 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ-------DP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------- 67 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS-------SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc-------CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 3345667778888999999999887662 22 24578889999999999999999999998752
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
|.....++++|.++..+|++++|+..+++|+++..
T Consensus 68 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 102 (213)
T 1hh8_A 68 -KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102 (213)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred -ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence 33356789999999999999999999999998643
No 123
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.95 E-value=8.5e-05 Score=69.83 Aligned_cols=100 Identities=10% Similarity=0.050 Sum_probs=82.5
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC-hHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-PLLG 391 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h-p~~~ 391 (455)
.+..+...|++++|+..+++++++ .|.+ ..+...++.++...|++++|+.++++++.......++.. |...
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSI-----APED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 456667789999999999888754 2333 466778999999999999999999999998876655433 4556
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..++.+|.++...|++++|+.++++|+++
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 67889999999999999999999999986
No 124
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.95 E-value=0.00016 Score=67.69 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh---------
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV--------- 378 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~--------- 378 (455)
..+...|..+...|++++|+..+++++++ .|.+ ..++..|+.++...|++++|+.++++++..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~ 189 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQL-----SNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL 189 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH
Confidence 34556677788899999999999999875 2344 467888999999999999999998887542
Q ss_pred ------------------HHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 379 ------------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 379 ------------------~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
+++.+- .+|.-...+++||.++...|++++|+..|.++++.
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~-~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVA-ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHh-cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 111111 13334456899999999999999999999999985
No 125
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.94 E-value=0.00017 Score=61.34 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=71.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..+...|++++|+..++++++. .|. ...+...++.++...|++++|.+++++++... +.+
T Consensus 46 ~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~--- 109 (186)
T 3as5_A 46 LHLGIAYVKTGAVDRGTELLERSLAD-----APD---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-----PIN--- 109 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTC---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----cHh---
Confidence 33455566788999999888888765 222 24556778888889999999999988887642 223
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...++.+|.++...|++++|+.++++++++
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 456788899999999999999999998875
No 126
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.93 E-value=9.3e-05 Score=74.76 Aligned_cols=106 Identities=12% Similarity=0.038 Sum_probs=83.6
Q ss_pred HHHHHHHhhhc---------CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc--------ccHHHHHHHH
Q 012829 310 LSKKTLALTSC---------GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYC 372 (455)
Q Consensus 310 l~~~a~~~~~~---------g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~--------g~~~~A~~~~ 372 (455)
+...+..+... |++++|+..+++++++ .|. -..++..++.+|... |++++|+.++
T Consensus 173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~ 244 (474)
T 4abn_A 173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVL---DGRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244 (474)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 33445556666 8999999999999875 233 345678899999998 9999999999
Q ss_pred HHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829 373 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 433 (455)
Q Consensus 373 ~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~ 433 (455)
++++.+. |.++.....++++|.++..+|++++|+..+++|+++ .|+++...
T Consensus 245 ~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~a~ 295 (474)
T 4abn_A 245 AQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-----DPAWPEPQ 295 (474)
T ss_dssp HHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred HHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Confidence 9999862 213366788999999999999999999999999985 46666443
No 127
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.93 E-value=0.00013 Score=69.40 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
++.+...+..+...|++++|+..+++++.. .|.+ ..+...++.++...|++++|+.++++++.. .|.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~ 69 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMD 69 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----Cccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 445666778888999999999999998864 2333 467788999999999999999999998875 233
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
+ ...++.+|.++...|++++|+..+++++++
T Consensus 70 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 100 (359)
T 3ieg_A 70 F---TAARLQRGHLLLKQGKLDEAEDDFKKVLKS 100 (359)
T ss_dssp C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS
T ss_pred c---chHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 4 366899999999999999999999999875
No 128
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.93 E-value=4.2e-05 Score=64.57 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccH----------HHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDW----------KEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~----------~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
.|++|+..+++++++ +|.-..++.+++.++..++++ ++|+..++++|.+- |...
T Consensus 17 ~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--------P~~~ 80 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--------PKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------TTCH
T ss_pred HHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------cCcH
Confidence 355677777777654 444556777888888888765 46777777666632 3345
Q ss_pred HHHHHHHHHhhhcC-----------CcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLG-----------DTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 392 ~~l~~La~l~~~~g-----------~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
..+++||.+|..+| ++++|+.++++|+++ .|+++.+...+......
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-----~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE-----QPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHhC
Confidence 66889999998775 899999999999985 67888887766655544
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.92 E-value=6.3e-05 Score=61.12 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=63.9
Q ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 344 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 344 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
-+|..+..+.+++..|...|+|++|++++.+++.. .|.-...++++|.++..+|++++|+..+++|+++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 36788889999999999999999999999999874 2333467899999999999999999999999985
Q ss_pred ccCCCChh
Q 012829 424 THGTNSPF 431 (455)
Q Consensus 424 ~~G~~hp~ 431 (455)
.|+++.
T Consensus 77 --~p~~~~ 82 (126)
T 4gco_A 77 --DSKFIK 82 (126)
T ss_dssp --CTTCHH
T ss_pred --hhhhhH
Confidence 555553
No 130
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.92 E-value=0.00024 Score=70.23 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=91.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc-HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
.....+..+...|++++|+..+++++++ .|.++. ....+..++.++...|++++|+.++++++.. +
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~ 325 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------E 325 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------C
Confidence 3345577778889999999999998764 344443 3567888999999999999999999998875 2
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
|.....++.+|.++...|++++|+..+++|+++ .|+++.+...+..+....
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-----NENDQQIREGLEKAQRLL 376 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SSSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHh
Confidence 334467899999999999999999999999984 577776666555544443
No 131
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.91 E-value=6.8e-05 Score=68.73 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=67.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
+...|..+...|++++|+..+++++++ .|.++. +...++.+|...|++++|+.++++++. .|.+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~ 72 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAK-----KYNSPY---IYNRRAVCYYELAKYDLAQKDIETYFS-----KVNATKA 72 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHT-----TCCCST---THHHHHHHHHHTTCHHHHHHHHHHHHT-----TSCTTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHHHHhhHHHHHHHHHHHHh-----ccCchhH
Confidence 345566677778888888888777653 233332 455677778888888888888777766 1223333
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.+..++.+|.++...|++++|++++++|+++
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4666778888888888888888888888774
No 132
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.91 E-value=9.7e-05 Score=69.46 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=84.2
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829 319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 398 (455)
Q Consensus 319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La 398 (455)
..|++++|+..++++++. .|. -..++.+++.++..+|+|++|..++++++.. .|++|.+ ++++|
T Consensus 178 ~~~~~~eA~~~~~~~l~~-----~p~---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~---l~~l~ 241 (291)
T 3mkr_A 178 GGEKLQDAYYIFQEMADK-----CSP---TLLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPET---LINLV 241 (291)
T ss_dssp CTTHHHHHHHHHHHHHHH-----SCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHH
T ss_pred CchHHHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHH
Confidence 457899999999988764 333 3556788999999999999999999999874 3566654 89999
Q ss_pred HHhhhcCCcHH-HHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 399 KLEWFLGDTEN-AIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 399 ~l~~~~g~~~e-A~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
.++..+|+.++ +..+++++++ ..|+||.+.++..+.....
T Consensus 242 ~~~~~~g~~~eaa~~~~~~~~~-----~~P~~~~~~d~~~~~~~fd 282 (291)
T 3mkr_A 242 VLSQHLGKPPEVTNRYLSQLKD-----AHRSHPFIKEYRAKENDFD 282 (291)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHH
Confidence 99999999976 5688888876 4799999999877665543
No 133
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.90 E-value=0.00015 Score=57.93 Aligned_cols=93 Identities=23% Similarity=0.302 Sum_probs=73.7
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
..+..+...|++++|+..+++++.. .|.+ ..+...++.++...|++++|+.++++++... +.+ .
T Consensus 40 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~ 103 (136)
T 2fo7_A 40 NLGNAYYKQGDYDEAIEYYQKALEL-----DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PRS---A 103 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TTC---H
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH-----CCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCC---h
Confidence 3455566778999999999888764 2222 3456788999999999999999999888742 233 3
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..++.+|.++...|++++|..++.+++++
T Consensus 104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 104 EAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 56788999999999999999999999875
No 134
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.89 E-value=0.0001 Score=66.07 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=82.3
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..+...|++++|+..+++++++. |. ...+...++.++...|++++|+.++++++... +.+
T Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~--- 192 (243)
T 2q7f_A 129 YMLGTVLVKLEQPKLALPYLQRAVELN-----EN---DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-----PGH--- 192 (243)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-----TTC---
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-----Cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----ccc---
Confidence 334556677899999999998887652 22 24467788999999999999999999887642 233
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 441 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~ 441 (455)
...++.+|.++..+|++++|+.++++++++ .|+++.....+..|..
T Consensus 193 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 193 ADAFYNAGVTYAYKENREKALEMLDKAIDI-----QPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CcchHHHHHHHHHHHh
Confidence 446889999999999999999999999874 5777776666555543
No 135
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.84 E-value=0.00013 Score=75.37 Aligned_cols=96 Identities=17% Similarity=-0.017 Sum_probs=78.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..+++++++ .|. ...++.+++.+|..+|++++|++++++++... +.+
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~- 90 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLAL-----HPG---HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-----PEH- 90 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTT-----STT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCC-
Confidence 3445566777889999999999998764 233 35677889999999999999999999998852 333
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...++++|.++..+|++++|+..+++|+++
T Consensus 91 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 91 --PGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999999986
No 136
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.84 E-value=0.0001 Score=69.32 Aligned_cols=114 Identities=14% Similarity=0.203 Sum_probs=87.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc-ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
....+..+...|++++|+..+++++.+....-.+.. +....+...++.+|...|++++|+.++++++... +.+
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~- 269 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----PQN- 269 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC-
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----ccc-
Confidence 345566677889999999999999887654433322 3345677889999999999999999999998752 233
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI 436 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~ 436 (455)
...++.+|.++..+|++++|+.++++|+++ .|+++.....+
T Consensus 270 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l 310 (330)
T 3hym_B 270 --ASTYSAIGYIHSLMGNFENAVDYFHTALGL-----RRDDTFSVTML 310 (330)
T ss_dssp --SHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-----CSCCHHHHHHH
T ss_pred --hHHHHHHHHHHHHhccHHHHHHHHHHHHcc-----CCCchHHHHHH
Confidence 456889999999999999999999999874 46666544433
No 137
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.84 E-value=0.00025 Score=60.91 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=75.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH----------
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ---------- 380 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~---------- 380 (455)
.+.+..+...|++++|+..+++++++ .|++ ..++..++.+|...|++++|+..+.+++....
T Consensus 9 ~~lG~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDGAIRAYKKVLKA-----DPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 34466667788899998888888764 2333 45667788888888888888777766543211
Q ss_pred -----------------hhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 381 -----------------RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 381 -----------------~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
+.. ..+|.-...+..+|.++..+|++++|+..+++++++ .|+++ ++...+..+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~lg~~~ 151 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAI-ALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-----KPGFI---RAYQSIGLAY 151 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----cchhh---hHHHHHHHHH
Confidence 000 012222344667788888888888888888888875 34443 4444455444
Q ss_pred HHH
Q 012829 444 AEA 446 (455)
Q Consensus 444 ~~~ 446 (455)
.++
T Consensus 152 ~~~ 154 (184)
T 3vtx_A 152 EGK 154 (184)
T ss_dssp HHT
T ss_pred HHC
Confidence 433
No 138
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.84 E-value=0.00017 Score=70.05 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=66.8
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..+...|++++|+..+++++++ .|.+ ..+...++.++...|++++|+.++++++.. +|..
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~ 338 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRL-----CPTH---ADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEF 338 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-----Cccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc
Confidence 34455556667788888777777654 2333 345667778888888888888888777763 3444
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...++++|.++...|++++|+..+++|+++
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566788888888888888888888888864
No 139
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.83 E-value=0.00034 Score=65.49 Aligned_cols=119 Identities=12% Similarity=-0.030 Sum_probs=86.5
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
....+..+...|++++|+..+++++++ .|. ...+...++.++...|++++|+.++++++... +.+
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~-- 239 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVEL-----RPD---DAQLWNKLGATLANGNRPQEALDAYNRALDIN-----PGY-- 239 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC--
Confidence 344556667889999999999998765 233 34567889999999999999999999988742 233
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh----hHHHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP----FMKELILKLEEAQA 444 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp----~~~~~~~~l~~~~~ 444 (455)
...++.+|.++..+|++++|+..+++|+++....-++.+. ....+...+..+..
T Consensus 240 -~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 240 -VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 4568899999999999999999999999876554333321 13444445554443
No 140
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.82 E-value=7.9e-05 Score=69.98 Aligned_cols=114 Identities=11% Similarity=0.028 Sum_probs=90.1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC-
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH- 387 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h- 387 (455)
.....+..+...|++++|+..++++++.. |. ...+...++.+|...|++++|+.++++++.......+..+
T Consensus 208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 208 LWNKLGATLANGNRPQEALDAYNRALDIN-----PG---YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence 34456667778899999999999987652 22 3456778999999999999999999999887654333222
Q ss_pred ---hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh
Q 012829 388 ---PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 430 (455)
Q Consensus 388 ---p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp 430 (455)
......+..+|.++..+|++++|...+++|++++...+|.++.
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 325 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSM 325 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTSSCC
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhHHHh
Confidence 1256778999999999999999999999999999998887653
No 141
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.82 E-value=0.00018 Score=61.11 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=76.8
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..+...|++++|+..+++++.. .|.+ ..+...++.++...|++++|+.++++++... +.+
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~--- 143 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEA-----NPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLR-----PNE--- 143 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-----ccc---
Confidence 44566667789999999999888765 2233 4567789999999999999999999988742 233
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
...++.+|.++...|++++|..++++++++.
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4668899999999999999999999998764
No 142
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=1.9e-05 Score=61.72 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
+......+..+...|++++|+..+++++++ .|.+ ..++.+++.++..+|++++|++++++++... |.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT----STA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC----SST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCc
Confidence 344556777888999999999999999875 2333 4667889999999999999999999998743 322
Q ss_pred -C-hHHHHHHHHHHHHhhhcCCcHHHHHHHH
Q 012829 387 -H-PLLGLQYYTCGKLEWFLGDTENAIKSMT 415 (455)
Q Consensus 387 -h-p~~~~~l~~La~l~~~~g~~~eA~~~l~ 415 (455)
. ...+..++.+|.++..+|++++|+..++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 1 2236778899999999988877765443
No 143
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}
Probab=97.80 E-value=1.9e-05 Score=66.42 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=38.5
Q ss_pred cccccCCCCCC---CcEEEEeCCEEEEEEecccCCCCeeEEeecCCCC
Q 012829 182 VISIINHSCLP---NAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAG 226 (455)
Q Consensus 182 ~~s~~NHSC~P---N~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~~ 226 (455)
.+.++||||.| |+...-.++.+.++|+|+|++||||++-|++.+.
T Consensus 97 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~rdI~pGeELlv~Yg~~y~ 144 (151)
T 3db5_A 97 WMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYA 144 (151)
T ss_dssp GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC---
T ss_pred ceeEEEecCCcccCceEEEEECCEEEEEEccccCCCCEEEEecCHHHH
Confidence 46799999965 9988888999999999999999999999998764
No 144
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.79 E-value=1.4e-05 Score=80.88 Aligned_cols=110 Identities=13% Similarity=-0.011 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
.......+..+...|++++|+..+++++++ ++....++.+++.+|..+|++++|++++++++... +.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~ 106 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PH 106 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Confidence 344566777888999999999999999875 33345678899999999999999999999998752 33
Q ss_pred ChHHHHHHHHHHHH--hhhcCCcHHHHHHHH-----------HHHHhchhccCCCChhH
Q 012829 387 HPLLGLQYYTCGKL--EWFLGDTENAIKSMT-----------EAVEILRITHGTNSPFM 432 (455)
Q Consensus 387 hp~~~~~l~~La~l--~~~~g~~~eA~~~l~-----------~A~~i~~~~~G~~hp~~ 432 (455)
++ ..+..++.+ +..+|++++|++.++ +|+++-....|+.++..
T Consensus 107 ~~---~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 162 (477)
T 1wao_1 107 DK---DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDG 162 (477)
T ss_dssp CT---THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGG
T ss_pred CH---HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccc
Confidence 33 345566666 888899999999999 88888888889988864
No 145
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.78 E-value=8.1e-05 Score=64.00 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=76.7
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH---------
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ--------- 380 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~--------- 380 (455)
+...+..+...|++++|+..+++++++ +|.-..++..++.++...|++++|+.++++++....
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 80 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA 80 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHH
Confidence 345566677889999999998887664 334456788899999999999999998887754310
Q ss_pred -----hhcCC------------CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 381 -----RVYPQ------------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 381 -----~~~g~------------~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...+. .+|.-...++.+|.++...|++++|+..+++++++
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 00111 13444566888999999999999999999999874
No 146
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.78 E-value=0.00045 Score=61.77 Aligned_cols=94 Identities=15% Similarity=0.027 Sum_probs=72.6
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..+...|++++|+..++++++.. |.+ ..+...++.++...|++++|+.++++++... +.+
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~--- 158 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAG-----MEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELN-----END--- 158 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-----CCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----TTC---
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----Ccc---
Confidence 445566677889999999888887642 222 3456778889999999999999998887642 233
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...++.+|.++...|++++|+..++++++.
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346788999999999999999999999875
No 147
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=0.00023 Score=53.06 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCC
Q 012829 348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 427 (455)
Q Consensus 348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~ 427 (455)
.......++.++...|++++|+.++++++... +.+ ...++.+|.++...|++++|+.++++|+++ .|
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CC
Confidence 45667789999999999999999999998742 233 456889999999999999999999999986 35
Q ss_pred CChhH
Q 012829 428 NSPFM 432 (455)
Q Consensus 428 ~hp~~ 432 (455)
+++..
T Consensus 75 ~~~~~ 79 (91)
T 1na3_A 75 NNAEA 79 (91)
T ss_dssp TCHHH
T ss_pred CCHHH
Confidence 55543
No 148
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.78 E-value=0.00018 Score=72.55 Aligned_cols=96 Identities=15% Similarity=0.074 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhhcCCh-HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 308 NILSKKTLALTSCGNH-QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~-~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
..+...+..+...|++ ++|+..+++++++ ++....++..|+.+|...|++++|++++++++...
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------- 167 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC------- 167 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------
Confidence 3445567777888999 9999999999875 23345678899999999999999999999998753
Q ss_pred ChHHHHHHHHHHHHhhhc---------CCcHHHHHHHHHHHHh
Q 012829 387 HPLLGLQYYTCGKLEWFL---------GDTENAIKSMTEAVEI 420 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~---------g~~~eA~~~l~~A~~i 420 (455)
|. ...++++|.++..+ |++++|+..+++|+++
T Consensus 168 -p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 168 -KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp -CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 22 37789999999999 9999999999999986
No 149
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00026 Score=54.97 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 428 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 428 (455)
......++..+...|+|++|++++++++.. .|.+ ...++++|.++..+|++++|+..+++|+++. |+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence 455678899999999999999999999885 2334 4568999999999999999999999999753 44
Q ss_pred C---hhHHHHHHHHHHHHHHHh
Q 012829 429 S---PFMKELILKLEEAQAEAS 447 (455)
Q Consensus 429 h---p~~~~~~~~l~~~~~~~~ 447 (455)
+ .....+...+..+...+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 4 122445555555555554
No 150
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.0011 Score=65.09 Aligned_cols=117 Identities=15% Similarity=0.009 Sum_probs=97.6
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..+...|++.+|...++.++...... .+++..+.+...++.+|...|+|++|..++++++.+..... ..+...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~ 215 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTV 215 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHH
Confidence 344666778899999999999887765432 34577888999999999999999999999999999877654 345567
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 430 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp 430 (455)
+..+..+|.++...|++++|..++.+|++.....-..++.
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 8889999999999999999999999999999888776665
No 151
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.70 E-value=0.00019 Score=70.39 Aligned_cols=61 Identities=7% Similarity=-0.075 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
++.+++.++..+|++++|+..+++++.+ .|.-...++++|.++..+|++++|+..+++|++
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3344444444444444444444444431 122223445555555555555555555555555
No 152
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00051 Score=67.62 Aligned_cols=128 Identities=8% Similarity=0.055 Sum_probs=79.3
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
++...+..+...|++++|.+.+++++.+...+ +.......++..++.++...|++++|+.+++.++.+..... ..+
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 132 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVF 132 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccH
Confidence 44555666677888888888888777765432 11222333445555666666777777777777777666543 334
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
..+..+.+||.++...|++++|.+++++++.+.... .+++...++...+..+
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~ 184 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKV 184 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHH
Confidence 456667777777777777777777777777665544 2344444444444333
No 153
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.69 E-value=0.00017 Score=65.90 Aligned_cols=91 Identities=9% Similarity=-0.068 Sum_probs=74.2
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829 318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 397 (455)
Q Consensus 318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 397 (455)
..+|++++|+..++++++. .+..++....+...++.++...|++++|+.++++++.. .+.+ ...++.+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~l 83 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILAS----RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDM---PEVFNYL 83 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTS----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCC---HHHHHHH
T ss_pred CccchHHHHHHHHHHHHhc----ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CCCc---HHHHHHH
Confidence 3456788899888887653 22334567788899999999999999999999999885 2333 4568999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHh
Q 012829 398 GKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 398 a~l~~~~g~~~eA~~~l~~A~~i 420 (455)
|.++...|++++|+.++++|+++
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~ 106 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLEL 106 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhc
Confidence 99999999999999999999986
No 154
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.69 E-value=0.00044 Score=67.07 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
++..++.++...|++++|++++++++... |.+ ...++.+|.++...|++++|+..+++|++
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLC-----PTH---ADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555555544421 122 23344555555555555555555555544
No 155
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}
Probab=97.67 E-value=4e-05 Score=65.48 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=38.3
Q ss_pred cccccCCCCC---CCcEEEEeCCEEEEEEecccCCCCeeEEeecCCCC
Q 012829 182 VISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAG 226 (455)
Q Consensus 182 ~~s~~NHSC~---PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~~ 226 (455)
.+.++||+|. +|+...-.++.+.++|+|+|++||||++-|.+.+.
T Consensus 101 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~RdI~pGeELlvwYg~~y~ 148 (170)
T 3ep0_A 101 WMTYIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSHN 148 (170)
T ss_dssp GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC---
T ss_pred eeeeEEecCCcccCCeeeEEECCEEEEEECcCcCCCCEEEEeeCHHHH
Confidence 3578899997 89988778899999999999999999999998753
No 156
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00035 Score=70.15 Aligned_cols=99 Identities=11% Similarity=0.016 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
.+..+...+..+...|++++|+..+++++... |+ ..++..++.++...|++++|+..+++++.. .
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~- 69 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED----PVFYSNLSACYVSVGDLKKVVEMSTKALEL-----K- 69 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----C-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----C-
Confidence 45667778888899999999999999998753 32 567888999999999999999999998874 2
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
|.....++.+|.++..+|++++|+..+++++.+-
T Consensus 70 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 70 --PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp --SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred --hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3334668899999999999999999999998754
No 157
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.64 E-value=0.00014 Score=71.27 Aligned_cols=92 Identities=9% Similarity=0.067 Sum_probs=56.3
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.+..+...|++++|+..+++++++ ++.-..++.+++.++..+|+|++|+.++++++.+ +|.-..
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------~P~~~~ 235 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNS 235 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHH
Confidence 344445556666666666666553 2223445666777777777777777777777763 233345
Q ss_pred HHHHHHHHhhh-cCCcHHH-----HHHHHHHHHh
Q 012829 393 QYYTCGKLEWF-LGDTENA-----IKSMTEAVEI 420 (455)
Q Consensus 393 ~l~~La~l~~~-~g~~~eA-----~~~l~~A~~i 420 (455)
.++++|.++.. .|..++| +.++++|+.+
T Consensus 236 a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 236 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 56777777777 4444666 3667777664
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.63 E-value=0.00029 Score=56.40 Aligned_cols=84 Identities=12% Similarity=-0.014 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 431 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~ 431 (455)
...++..+...|+|++|+.++++++... |.++.....++.+|.++...|++++|+..++++++. .|+++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~ 74 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDK 74 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcc
Confidence 4567888999999999999999887743 577777788999999999999999999999999884 477766
Q ss_pred HHHHHHHHHHHHHH
Q 012829 432 MKELILKLEEAQAE 445 (455)
Q Consensus 432 ~~~~~~~l~~~~~~ 445 (455)
..+..-.+..+..+
T Consensus 75 ~~~~~~~la~~~~~ 88 (129)
T 2xev_A 75 AAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 65655555555443
No 159
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.61 E-value=0.00017 Score=60.66 Aligned_cols=75 Identities=9% Similarity=-0.017 Sum_probs=63.3
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
+|.-..++..++..+...|+|++|+.++++++.. .|.+| ..++++|.++..+|++++|+..+++|+++
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~---~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNV---DYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 5666778899999999999999999999998874 34554 56899999999999999999999999985
Q ss_pred cCCCChhH
Q 012829 425 HGTNSPFM 432 (455)
Q Consensus 425 ~G~~hp~~ 432 (455)
.|++|..
T Consensus 100 -~P~~~~~ 106 (151)
T 3gyz_A 100 -GKNDYTP 106 (151)
T ss_dssp -SSSCCHH
T ss_pred -CCCCcHH
Confidence 4666644
No 160
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.61 E-value=0.00043 Score=68.41 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
.......+..+...|++++|+..+++++.. .|. -..+...++.+|...|++++|+.++++++...
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 90 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK------- 90 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 445556677778899999999999998764 233 36677889999999999999999999988752
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
|.....++.+|.++..+|++++|+..+++++++
T Consensus 91 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 123 (450)
T 2y4t_A 91 -MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 333567889999999999999999999999874
No 161
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.60 E-value=0.00067 Score=56.64 Aligned_cols=101 Identities=12% Similarity=0.002 Sum_probs=78.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..+++++++. |. ...+...++.++...|++++|+.++++++.. .+.++
T Consensus 49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~ 115 (166)
T 1a17_A 49 YYGNRSLAYLRTECYGYALGDATRAIELD-----KK---YIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDK 115 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCH
Confidence 34556677788899999999999988752 33 3456788999999999999999999998874 23444
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
. +..++.++..+...|++++|+..+.++..++..
T Consensus 116 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 116 D-AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 3 344566677788899999999999998887643
No 162
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.59 E-value=0.00034 Score=63.95 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=61.4
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..+...|++++|+..+++++++ .|.+ ..+...++.+|...|++++|+.++++++.. +|..
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~ 141 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDR-----DTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--------TTTD 141 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCS--------SCCC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhc--------CCCc
Confidence 34555666778888888888887764 2223 245667888888888888888888887764 2333
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...++++|...+..+++++|+..+++|+++
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666663344444666666666666654
No 163
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.59 E-value=0.00073 Score=69.45 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=87.0
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc-HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
....+..+...|++++|+..+++++++.... +.++. ...++..++.+|...|++++|++++++++... |.++
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~ 550 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-----TNDA 550 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SCCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCh
Confidence 3445666778899999999999988764321 22333 36788899999999999999999999988752 3444
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI 436 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~ 436 (455)
..++.+|.++...|++++|+.++++++++ .|+++.....+
T Consensus 551 ---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~l 590 (597)
T 2xpi_A 551 ---NVHTAIALVYLHKKIPGLAITHLHESLAI-----SPNEIMASDLL 590 (597)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCChHHHHHH
Confidence 56899999999999999999999999985 57776554443
No 164
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.58 E-value=0.00016 Score=60.53 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=61.7
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
++.-......++..+...|+|++|+.++++++.. .|.++ ..++++|.++..+|++++|+..+++|+++
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 84 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDS---RFFLGLGACRQAMGQYDLAIHSYSYGAVM---- 84 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3555667888999999999999999999998874 33444 55789999999999999999999999985
Q ss_pred cCCCChhH
Q 012829 425 HGTNSPFM 432 (455)
Q Consensus 425 ~G~~hp~~ 432 (455)
.|++|..
T Consensus 85 -~p~~~~~ 91 (148)
T 2vgx_A 85 -DIXEPRF 91 (148)
T ss_dssp -STTCTHH
T ss_pred -CCCCchH
Confidence 4666654
No 165
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.53 E-value=0.0011 Score=67.99 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=79.1
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH-HHH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LGL 392 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~~ 392 (455)
+..+...|++++|+..+++++++ .|.+ ..++..++.+|...|++++|++++++++...... +.+|. .+.
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~ 517 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYAL-----FQYD---PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAA 517 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHH
Confidence 44455567777777777776653 2333 3457789999999999999999999998876542 33454 477
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 433 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~ 433 (455)
.+..+|.++...|++++|+..+++++++ +|+++.+.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~ 553 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLL-----STNDANVH 553 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSCCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHH
Confidence 8999999999999999999999999986 46665443
No 166
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.50 E-value=0.00063 Score=70.07 Aligned_cols=98 Identities=10% Similarity=-0.113 Sum_probs=80.3
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..+++++++ .|.+ ..++.+++.+|...|++++|++++++++... +.+
T Consensus 59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~- 124 (568)
T 2vsy_A 59 AVARLGRVRWTQQRHAEAAVLLQQASDA-----APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQLL-----PEE- 124 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-
Confidence 3455677778889999999999999875 2333 5677889999999999999999999988752 233
Q ss_pred HHHHHHHHHHHHhhhc---CCcHHHHHHHHHHHHhch
Q 012829 389 LLGLQYYTCGKLEWFL---GDTENAIKSMTEAVEILR 422 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~---g~~~eA~~~l~~A~~i~~ 422 (455)
...++++|.++..+ |++++|...+++|++.-.
T Consensus 125 --~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 125 --PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp --HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 45688999999999 999999999999987643
No 167
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.49 E-value=0.00088 Score=62.81 Aligned_cols=102 Identities=14% Similarity=0.005 Sum_probs=74.4
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
..+..+...|++++|+..++++++. +|.+. .......+...+...|++++|+..+++++.. .| .+ .
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----~p-~~---~ 200 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQ-----DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK----CS-PT---L 200 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----SC-CC---H
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----CC-Cc---H
Confidence 3455567889999999999998765 24432 2222222334445569999999999998874 33 33 4
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 432 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~ 432 (455)
..++++|.++..+|++++|+..+++|+++ .|++|.+
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~ 236 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPET 236 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence 56899999999999999999999999975 3666644
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.47 E-value=0.00061 Score=57.36 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC----------ChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829 347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF----------HPLLGLQYYTCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~----------hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 416 (455)
..+......+..+...|+|++|+.++.+++.......+.. .|..+..++++|.++..+|++++|+..+.+
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4456677889999999999999999999999877654322 456678899999999999999999999999
Q ss_pred HHHh
Q 012829 417 AVEI 420 (455)
Q Consensus 417 A~~i 420 (455)
|+++
T Consensus 89 al~~ 92 (162)
T 3rkv_A 89 VLKR 92 (162)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9986
No 169
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00081 Score=53.78 Aligned_cols=64 Identities=19% Similarity=0.067 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...+..++..+...|+|++|+.++++++... |.-...++++|.++..+|++++|+..+++|+++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4566778899999999999999999998752 333467999999999999999999999999986
No 170
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.45 E-value=0.0004 Score=59.35 Aligned_cols=95 Identities=9% Similarity=0.072 Sum_probs=70.5
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
+...|++++|+..++++++. .|. -..+...++.+|...|++++|+.++++++... +.+ ...++.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA-----NPQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GEN---AELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH-----CCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSC---HHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHH
Confidence 34567888898888888764 233 34567889999999999999999999988754 234 346788
Q ss_pred HHHH-hhhcCCc--HHHHHHHHHHHHhchhccCCCChhH
Q 012829 397 CGKL-EWFLGDT--ENAIKSMTEAVEILRITHGTNSPFM 432 (455)
Q Consensus 397 La~l-~~~~g~~--~eA~~~l~~A~~i~~~~~G~~hp~~ 432 (455)
+|.+ +...|++ ++|+..+++|+++ .|+++..
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 117 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL-----DSNEITA 117 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH-----CTTCHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh-----CCCcHHH
Confidence 9999 7899999 9999999999986 4555543
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.45 E-value=0.0012 Score=55.80 Aligned_cols=75 Identities=12% Similarity=0.049 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC----C-ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ----F-HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~----~-hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
.....+++..+...|+|++|+..++++|.+-.. +|. + .|..+..++++|.++..+|++++|+..+.+|++++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~-~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT-MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-CcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 444567888899999999999999999997654 221 1 2345668999999999999999999999999997433
Q ss_pred c
Q 012829 424 T 424 (455)
Q Consensus 424 ~ 424 (455)
.
T Consensus 90 ~ 90 (159)
T 2hr2_A 90 R 90 (159)
T ss_dssp H
T ss_pred c
Confidence 3
No 172
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.44 E-value=0.0014 Score=48.63 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..+++++++ .|.+ ..+...++.++...|++++|+.++++++... |.+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p~~- 76 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN- 76 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----CCC-
Confidence 3445566677889999999999998865 2333 4567789999999999999999999988742 344
Q ss_pred HHHHHHHHHHHHhhhcC
Q 012829 389 LLGLQYYTCGKLEWFLG 405 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g 405 (455)
...+.++|.++..+|
T Consensus 77 --~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 77 --AEAKQNLGNAKQKQG 91 (91)
T ss_dssp --HHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHhcC
Confidence 345778888876654
No 173
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Probab=97.41 E-value=0.00012 Score=63.95 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=39.0
Q ss_pred cccccCCCCC---CCcEEEEeCCEEEEEEecccCCCCeeEEeecCCC
Q 012829 182 VISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETA 225 (455)
Q Consensus 182 ~~s~~NHSC~---PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~ 225 (455)
.+.++||+|. +|+...-.++.+.++|+|+|++||||++-|.+.+
T Consensus 131 WmRfVn~A~~~~eqNl~a~q~~~~I~y~a~RdI~pGeELlvwYg~~Y 177 (196)
T 3dal_A 131 WMRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDF 177 (196)
T ss_dssp GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred eEEeEEecCCcccCCcEEEEECCEEEEEECcccCCCCEEEEecCHHH
Confidence 3578999996 7998887899999999999999999999998653
No 174
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.41 E-value=0.0021 Score=49.96 Aligned_cols=84 Identities=10% Similarity=-0.075 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 431 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~ 431 (455)
...|+..+...|+|..|...++.++.....--. .-+.....+..||..+..+|++++|..++++|++ +.|+|+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~-----l~P~~~~ 81 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE-----LDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCCHH
Confidence 457899999999999999999999887643211 1133456789999999999999999999999987 4788877
Q ss_pred HHHHHHHHHH
Q 012829 432 MKELILKLEE 441 (455)
Q Consensus 432 ~~~~~~~l~~ 441 (455)
+..-+.-++.
T Consensus 82 ~~~n~~~~~~ 91 (104)
T 2v5f_A 82 ANGNLKYFEY 91 (104)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhHHHHHH
Confidence 6544444444
No 175
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.41 E-value=0.0011 Score=63.43 Aligned_cols=101 Identities=10% Similarity=-0.008 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
.....+.+..+...|++++|+..+++++++. | ....++.+++.+|..+|++++|+.++++++.+. |.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-----p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~ 262 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-----S---NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----PN 262 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CC
Confidence 4556677888889999999999999998762 3 335678899999999999999999999998852 33
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHH-HHHHHHHHhchh
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAI-KSMTEAVEILRI 423 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~-~~l~~A~~i~~~ 423 (455)
+ ...+..+|.++..+|++++|. ..+++.+..+..
T Consensus 263 ~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (336)
T 1p5q_A 263 N---KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 297 (336)
T ss_dssp C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4 356889999999999999984 466666655443
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.41 E-value=0.0012 Score=52.43 Aligned_cols=87 Identities=10% Similarity=0.027 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 428 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 428 (455)
......++..+...|+|++|+.++.+++... +.+ ...++.+|.++...|++++|+.++++|+++... .+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 74 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-----PTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NRED 74 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Ccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchh
Confidence 4566788999999999999999999988752 233 456889999999999999999999999987653 2445
Q ss_pred ChhHHHHHHHHHHHHH
Q 012829 429 SPFMKELILKLEEAQA 444 (455)
Q Consensus 429 hp~~~~~~~~l~~~~~ 444 (455)
++....+...+..+..
T Consensus 75 ~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 75 YRQIAKAYARIGNSYF 90 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5444555555555443
No 177
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0021 Score=64.27 Aligned_cols=117 Identities=14% Similarity=0.068 Sum_probs=88.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh---cccHHHHHHHHHHhhhhHHhhcCCC
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME---LEDWKEALAYCQLTIPVYQRVYPQF 386 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~---~g~~~~A~~~~~~~l~~~~~~~g~~ 386 (455)
....+..+...|++++|+..+++++.+.... +.......+...++.++.. .|++++|+.++++++... +.
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~ 447 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-----PR 447 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-----cc
Confidence 3455677788899999999999988764321 1111223467789999999 999999999999988742 33
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 441 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~ 441 (455)
+ ...++.+|.++...|++++|..++++|+++ .|+++.....+.-++.
T Consensus 448 ~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 448 S---EQAKIGLAQMKLQQEDIDEAITLFEESADL-----ARTMEEKLQAITFAEA 494 (514)
T ss_dssp C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSHHHHHHHHHHHHH
T ss_pred c---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHH
Confidence 3 456889999999999999999999999985 5777776665544443
No 178
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.38 E-value=0.0012 Score=55.72 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=58.4
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
+......+..++..+...|+|++|+.++++++... |.....++++|.++..+|++++|+..+++|+++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34556778889999999999999999999998853 333567999999999999999999999999986
No 179
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.37 E-value=0.00077 Score=68.14 Aligned_cols=94 Identities=12% Similarity=0.150 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
....+...+..+...|++++|+..+++++.. .|.+ ..++..++.+|..+|++++|+..+++++.. .|
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p 90 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-----DPNE---PVFYSNISACYISTGDLEKVIEFTTKALEI-----KP 90 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC
Confidence 4566777888899999999999999999875 2333 467888999999999999999999999874 23
Q ss_pred CChHHHHHHHHHHHHhhhcCCcHHHHHHHH
Q 012829 386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~ 415 (455)
.+ ...++.+|.++..+|++++|+..++
T Consensus 91 ~~---~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 91 DH---SKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TC---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ch---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34 4568899999999999999999884
No 180
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.35 E-value=0.0013 Score=54.10 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=61.5
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
++.-......++..+...|+|++|+.++++++.. .|.++ ..++.+|.++..+|++++|+..+++|+++
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDA---RYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4555667788999999999999999999998863 33444 55889999999999999999999999985
Q ss_pred cCCCChhH
Q 012829 425 HGTNSPFM 432 (455)
Q Consensus 425 ~G~~hp~~ 432 (455)
.|++|..
T Consensus 82 -~p~~~~~ 88 (142)
T 2xcb_A 82 -DINEPRF 88 (142)
T ss_dssp -CTTCTHH
T ss_pred -CCCCcHH
Confidence 4666654
No 181
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.31 E-value=0.00063 Score=71.92 Aligned_cols=94 Identities=9% Similarity=-0.064 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
.....+..+...|++++|+..+++++++ ++.-..++.+++.+|..+|++++|++.+++++... |++
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~- 500 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-----PGE- 500 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTC-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-
Confidence 4455677778889999999999998875 23345678889999999999999999999988743 222
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
...++++|.++..+|++++ +..|++|++
T Consensus 501 --~~~~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 501 --LAPKLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp --SHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred --hHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 2345566666666666666 666666665
No 182
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.30 E-value=0.0018 Score=49.21 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=54.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829 354 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 433 (455)
Q Consensus 354 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~ 433 (455)
..+..+...|+|++|+.++++++.. .+.++. ..++.+|.++..+|++++|+..+++|+++ .|+++...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT-----EPVGKD--EAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHH
Confidence 4677889999999999999998874 234432 16889999999999999999999999975 56666443
No 183
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.29 E-value=0.0016 Score=51.94 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=60.6
Q ss_pred CCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 342 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 342 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.+..+.....+..++..+...|+|++|+.++++++... +.+ ...++.+|.++...|++++|+..+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-----PKD---AKLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-----TTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44567777888999999999999999999999988742 233 566899999999999999999999999985
No 184
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.29 E-value=0.0024 Score=51.02 Aligned_cols=69 Identities=10% Similarity=-0.051 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 431 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~ 431 (455)
...++..+...|++++|+..+++++... |.+ ...++.+|.++...|++++|+..+++|+++ .|+++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~ 86 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-----PER---EEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIA 86 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Confidence 4567888999999999999999988742 334 456889999999999999999999999985 566665
Q ss_pred HH
Q 012829 432 MK 433 (455)
Q Consensus 432 ~~ 433 (455)
..
T Consensus 87 ~~ 88 (121)
T 1hxi_A 87 VH 88 (121)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 185
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.29 E-value=0.0021 Score=58.88 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=49.2
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----cccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829 320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 395 (455)
Q Consensus 320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 395 (455)
.+++++|+..++++.++. -..+...|+.+|.. .+++++|+.++++++.. .+ ...++
T Consensus 55 ~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~ 114 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KY---AEGCA 114 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHH
T ss_pred CCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------CC---ccHHH
Confidence 556666666666555431 23455566666666 66666666666666553 12 24566
Q ss_pred HHHHHhhh----cCCcHHHHHHHHHHHH
Q 012829 396 TCGKLEWF----LGDTENAIKSMTEAVE 419 (455)
Q Consensus 396 ~La~l~~~----~g~~~eA~~~l~~A~~ 419 (455)
+||.++.. .+++++|+.++++|++
T Consensus 115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 115 SLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 67777776 7777777777777766
No 186
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.27 E-value=0.0023 Score=64.64 Aligned_cols=94 Identities=18% Similarity=0.094 Sum_probs=61.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
...+..+...|++++|+..+++++.+. |. ...++..++.++...|++++|+.++++++... +.++
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~-- 344 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLN-----PE---YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-----PENV-- 344 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCS--
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccC-----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCH--
Confidence 344555566677777777777766531 22 23456667777777788888877777776632 2333
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..++.+|.++...|++++|+..+++++++
T Consensus 345 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 345 -YPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44667777777777777777777777765
No 187
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=0.0019 Score=52.65 Aligned_cols=70 Identities=16% Similarity=0.061 Sum_probs=60.5
Q ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 346 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 346 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
+........++..+...|+|++|+.++++++.. .++++.....++++|.++...|++++|+..+++++++
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 445667778899999999999999999998874 3456667888999999999999999999999999986
No 188
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.23 E-value=0.00048 Score=72.83 Aligned_cols=95 Identities=13% Similarity=0.041 Sum_probs=73.1
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829 318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 397 (455)
Q Consensus 318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 397 (455)
...|++++|++.++++++.....-...++....++..++.+|..+|++++|++.+++++... +++ ...++++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----GWR---WRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CCC---HHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----cch---HHHHHHH
Confidence 56789999999998887321111222234445667789999999999999999999998752 333 4678999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHh
Q 012829 398 GKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 398 a~l~~~~g~~~eA~~~l~~A~~i 420 (455)
|.++..+|++++|+..+++|+++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999985
No 189
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.17 E-value=0.0023 Score=51.57 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 346 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 346 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
+........++..+...|+|++|+.++++++... +.+ ...++++|.++..+|++++|+..+++|+++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLV---AVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----cCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445677889999999999999999999988852 233 467899999999999999999999999985
No 190
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}
Probab=97.16 E-value=0.00028 Score=59.14 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=39.4
Q ss_pred cccccCCCCC---CCcEEEEeCCEEEEEEecccCCCCeeEEeecCCC
Q 012829 182 VISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETA 225 (455)
Q Consensus 182 ~~s~~NHSC~---PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~ 225 (455)
.+.++||+|. +|+...-.++.+.++|+|+|++||||++-|.+.+
T Consensus 96 Wmr~vn~a~~~~eqNl~a~q~~~~I~~~~~r~I~pGeELlv~Y~~~y 142 (152)
T 3ihx_A 96 WMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASY 142 (152)
T ss_dssp GGGGCCBCCSTTTCCEEEEECSSSEEEEESSCBCTTCBCCEEECHHH
T ss_pred ceeeeeccCCccCCCcEEEEeCCeEEEEEeeecCCCCEEEEechHHH
Confidence 4589999998 7999888889999999999999999999998754
No 191
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.08 E-value=0.0058 Score=56.73 Aligned_cols=97 Identities=10% Similarity=-0.061 Sum_probs=73.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccH-HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~-~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
+..+...+..++|++|+..++.+. -.+ ++.. ..+...|+.++..+|++++|+.++++++. |+.-|.
T Consensus 139 ~~~a~l~~~~~r~~dA~~~l~~a~------~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~ 205 (282)
T 4f3v_A 139 WMKAVVYGAAERWTDVIDQVKSAG------KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEA 205 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTGG------GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhh------ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCcc
Confidence 334456678899999998875331 112 2322 45788999999999999999999998763 332255
Q ss_pred -HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 390 -LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 390 -~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
....++++|.++..+|+.++|...|++++++
T Consensus 206 ~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 206 CARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5567899999999999999999999999884
No 192
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.04 E-value=0.0012 Score=50.77 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
+...++.++...|++++|+.++++++... +.+ ...++++|.++..+|++++|+..+++|+++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-----PEE---SKYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----cCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34568888999999999999999988742 233 356889999999999999999999999986
No 193
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.02 E-value=0.0045 Score=48.74 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=56.9
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.+........++..+...|++++|+.++++++... |.....++.+|.++...|++++|+..+.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 34455667788999999999999999999988742 223567889999999999999999999999985
No 194
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.02 E-value=0.0055 Score=56.04 Aligned_cols=89 Identities=19% Similarity=0.134 Sum_probs=71.3
Q ss_pred HHHHHhhh----cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----cccHHHHHHHHHHhhhhHHhhc
Q 012829 312 KKTLALTS----CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVY 383 (455)
Q Consensus 312 ~~a~~~~~----~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~ 383 (455)
..+..+.. .+++++|+..++++.+. . ...+..+|+.+|.. .+++++|+.++++++..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----- 143 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----- 143 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-----
Confidence 34555566 88999999998888753 1 24678889999999 99999999999998873
Q ss_pred CCCChHHHHHHHHHHHHhhh----cCCcHHHHHHHHHHHHh
Q 012829 384 PQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVEI 420 (455)
Q Consensus 384 g~~hp~~~~~l~~La~l~~~----~g~~~eA~~~l~~A~~i 420 (455)
.+ ...++++|.++.. .+++++|+.++++|++.
T Consensus 144 --~~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 144 --ND---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp --TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred --Cc---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 13 3467889999998 99999999999999875
No 195
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.01 E-value=0.0023 Score=59.75 Aligned_cols=71 Identities=14% Similarity=-0.004 Sum_probs=57.5
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
+|.-..++.+|+.+|...|++++|++.+++++... | .+ .-+..+.+||.++..+|+.++|...+++++..+
T Consensus 215 ~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~----p-~~-~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 215 NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD----L-TA-ADGQTRXTFQEILAALGTGDALASXYRRQLYAL 285 (287)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-TG-GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----c-cc-ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Confidence 34445678899999999999999999999988842 2 22 115668899999999999999999999998753
No 196
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.00 E-value=0.0046 Score=57.40 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=68.5
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH-HH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GL 392 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~ 392 (455)
|..+...|++++|.+++..+.. .+|.+. ..+.++.++...++|++|+.+++.+.. ..+|.. ..
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~-----~~p~~~----~~~~~a~l~~~~~r~~dA~~~l~~a~~-------~~d~~~~~~ 172 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPV-----AGSEHL----VAWMKAVVYGAAERWTDVIDQVKSAGK-------WPDKFLAGA 172 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCC-----TTCHHH----HHHHHHHHHHHTTCHHHHHHHHTTGGG-------CSCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-----cCCchH----HHHHHHHHHHHcCCHHHHHHHHHHhhc-------cCCcccHHH
Confidence 4445677899999887654432 233333 678888999999999999999875433 125654 45
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
..+.||.++..+|++++|+..|++|..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 889999999999999999999999974
No 197
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.95 E-value=0.0053 Score=47.85 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..+...++..+...|++++|++++++++... +.+ ...++.+|.++...|++++|+.++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 4567788999999999999999999988742 233 456889999999999999999999999875
No 198
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.95 E-value=0.006 Score=47.04 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
......++..+...|+|++|+.++++++... +.+ ...++.+|.++...|++++|+..+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----PHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4556778899999999999999999988742 333 456889999999999999999999999986
No 199
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=96.91 E-value=0.00073 Score=60.31 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=39.4
Q ss_pred cccccCCCCC---CCcEEEEeCCEEEEEEecccCCCCeeEEeecCCC
Q 012829 182 VISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETA 225 (455)
Q Consensus 182 ~~s~~NHSC~---PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~ 225 (455)
.+.++||+|. +|+...-.++.+.++|+|+|++||||++-|.+.+
T Consensus 140 WmRfVn~Ar~~~EqNL~A~q~~~~Iyy~a~RdI~pGeELlVwYg~~Y 186 (237)
T 3ray_A 140 WMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDY 186 (237)
T ss_dssp GGGGCEECCCTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred ceeEEEcCCCcccccceeEEeCCEEEEEEccccCCCCEEEEeeCHHH
Confidence 4579999996 7988888899999999999999999999998765
No 200
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.86 E-value=0.0041 Score=53.06 Aligned_cols=67 Identities=13% Similarity=-0.055 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
-..++..++.++...|++++|+.++++++.. .|. +. -...++++|.++..+|+.++|+..+++++.-
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~-~~-~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKV----NLG-AQ-DGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTT-TT-TTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----Ccc-cC-hHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 3466788999999999999999999988763 221 11 1245788999999999999999999999864
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.84 E-value=0.0027 Score=48.14 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=48.2
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHH-HHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQ-TREKLIKILMELEDWKEALAYCQLTIPV 378 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~-~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 378 (455)
+.+..+...|++++|+..++++++. .|.+ .. ++..++.+|...|++++|+.++++++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT-----EPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----CSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4566677889999999999998774 2333 34 7788999999999999999999999874
No 202
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.84 E-value=0.0019 Score=51.09 Aligned_cols=62 Identities=19% Similarity=0.095 Sum_probs=48.5
Q ss_pred hcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829 361 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 432 (455)
Q Consensus 361 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~ 432 (455)
.+|++++|+.++++++.. +..+|.....++++|.++..+|++++|+..+++|+++ .|+++.+
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 63 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNHQAL 63 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchHH
Confidence 468999999999998873 3446888899999999999999999999999999986 4666543
No 203
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.74 E-value=0.004 Score=57.84 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...+..++..+...|+|++|+.++++++.. +|.....++++|.++..+|++++|+..+++|+++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 455677899999999999999999999885 2334567899999999999999999999999975
No 204
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.73 E-value=0.022 Score=47.45 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=70.3
Q ss_pred cHHHHHHHHHHHHHhcc---cHHHHHHHHHHhhhhHHhhcCCCCh-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 347 NLMQTREKLIKILMELE---DWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g---~~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
...++..+++.++...+ +.++++.+++.++.. ++| ...-.+|.||..++.+|+|++|..++++++++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-- 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-- 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence 45677888888888876 777888888776662 245 45677999999999999999999999999884
Q ss_pred hccCCCChhHHHHHHHHHHHHHH
Q 012829 423 ITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 423 ~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
-|+|+...++...+++...+
T Consensus 101 ---eP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 101 ---EPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHHH
Confidence 58999999988888876543
No 205
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.72 E-value=0.0054 Score=61.41 Aligned_cols=90 Identities=6% Similarity=-0.041 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
....+.+..+...|++++|+..+++++++. |. ...++.+++.+|..+|+|++|+..+++++.+ .
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-----p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~ 381 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-----SA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------N 381 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Cc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence 444567777888899999999999998752 33 3567889999999999999999999999874 2
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHH
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKS 413 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~ 413 (455)
|.-...+..++.++..+|++++|.+.
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345688899999999999888764
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.71 E-value=0.0071 Score=46.30 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=51.5
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ 380 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~ 380 (455)
....+..+...|++++|+..+++++++ .|.+ ..++..++.+|...|++++|++.+++++.+..
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVET-----DPDY---VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 445667778899999999999999875 2333 34678899999999999999999999988654
No 207
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.68 E-value=0.0052 Score=53.39 Aligned_cols=89 Identities=10% Similarity=-0.108 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
......+..+...|++++|+..+++++++ .| ....++..++.+|..+|++++|+.++++++.+ .|.+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~ 155 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI-----DK---NNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNN 155 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----ST---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----Cc---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCc
Confidence 44556677788899999999999999875 23 33567888999999999999999999998875 2344
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHH
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIK 412 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~ 412 (455)
...+..++.++..+++.+++.+
T Consensus 156 ---~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 156 ---LDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp ---HHHHHHHHHHHHHHHHHHC---
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888777763
No 208
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.62 E-value=0.0071 Score=58.73 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhh--------cCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRV--------YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~--------~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...+..++..+...|+|++|+.++++++...... ....+|..+..++++|.++..+|++++|+.++++|+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 4456678899999999999999999999866542 11256777889999999999999999999999999985
No 209
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.60 E-value=0.018 Score=53.99 Aligned_cols=83 Identities=11% Similarity=0.036 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhh
Q 012829 324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF 403 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~ 403 (455)
++|+..++++++. ++|.+ ..+...++..+...|++++|...+++++.+ +|.++.. .+.++|.++..
T Consensus 81 ~~A~~~~~rAl~~----~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~--~~~~~~~~~~~ 146 (308)
T 2ond_A 81 DEAANIYERAIST----LLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTL--VYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHTT----TTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCccH--HHHHHHHHHHH
Confidence 7888888887652 23433 345677888888999999999999998873 4455532 57778888888
Q ss_pred cCCcHHHHHHHHHHHHh
Q 012829 404 LGDTENAIKSMTEAVEI 420 (455)
Q Consensus 404 ~g~~~eA~~~l~~A~~i 420 (455)
.|++++|+..+++|+++
T Consensus 147 ~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 147 AEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHCHHHHHHHHHHHHTS
T ss_pred hcCHHHHHHHHHHHHhc
Confidence 89999999999988864
No 210
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.52 E-value=0.0093 Score=52.69 Aligned_cols=31 Identities=10% Similarity=-0.156 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhh----cCCcHHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWF----LGDTENAIKSMTEAVE 419 (455)
Q Consensus 389 ~~~~~l~~La~l~~~----~g~~~eA~~~l~~A~~ 419 (455)
.....+++||.++.. .+++++|+.++++|.+
T Consensus 123 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 345555555555555 5555555555555554
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.49 E-value=0.017 Score=43.83 Aligned_cols=82 Identities=9% Similarity=0.012 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhccc---HHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccC
Q 012829 350 QTREKLIKILMELED---WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 426 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~---~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G 426 (455)
..+..++.++...++ .++|..++++++. .-|.++ -.++.+|.++...|++++|+.+|+++++. .
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-----~dp~~~---rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~-----~ 73 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQ-----LEPYNE---AALSLIANDHFISFRFQEAIDTWVLLLDS-----N 73 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-----HCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHTC-----C
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----HCcCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C
Confidence 344456666654444 6899999999888 334554 55778899999999999999999999874 3
Q ss_pred CCChhHHHHHHHHHHHHH
Q 012829 427 TNSPFMKELILKLEEAQA 444 (455)
Q Consensus 427 ~~hp~~~~~~~~l~~~~~ 444 (455)
|+.|-...+...+++++.
T Consensus 74 p~~~~~~~i~~~I~~A~~ 91 (93)
T 3bee_A 74 DPNLDRVTIIESINKAKK 91 (93)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHh
Confidence 446666677777776654
No 212
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.33 E-value=0.049 Score=53.16 Aligned_cols=126 Identities=7% Similarity=0.034 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc-cCCc-c------------ccHHHHHHHHHHHHHhcccHHHHHHH
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL-YHPF-S------------VNLMQTREKLIKILMELEDWKEALAY 371 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~-l~~~-~------------~~~~~~~~~L~~~~~~~g~~~~A~~~ 371 (455)
+++.+...+......|+.+++...+++++.+.+.- ++.. . -....+...++..+...|++.+|+..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34444445555556678888888888888876442 2211 1 11223445566777888999999988
Q ss_pred HHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC-ChhHHHHHHHH
Q 012829 372 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKELILKL 439 (455)
Q Consensus 372 ~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~-hp~~~~~~~~l 439 (455)
++.++.. ||.--..+..|-.++...|+..+|+..|++..+.+...+|-+ .|.++++...+
T Consensus 194 l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~i 254 (388)
T 2ff4_A 194 LEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 254 (388)
T ss_dssp HHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 8877552 343333455556678899999999999999999999999976 77777766553
No 213
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.31 E-value=0.0072 Score=57.81 Aligned_cols=95 Identities=7% Similarity=-0.136 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
...+.+..+...|++++|+..+++++++ .| ....++.+++.+|..+|+|++|+.++++++.+. |.++
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p---~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-----p~~~ 298 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE-----EE---KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-----PDDK 298 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCH
Confidence 4556778888899999999999999875 23 335678899999999999999999999998753 3344
Q ss_pred HHHHHHHHHHHHh-hhcCCcHHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLE-WFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 389 ~~~~~l~~La~l~-~~~g~~~eA~~~l~~A~~ 419 (455)
..+..|+.+. ...+..+++...+.+++.
T Consensus 299 ---~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 299 ---AIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp --------------------------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3456666663 345666777777777765
No 214
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.29 E-value=0.035 Score=48.87 Aligned_cols=64 Identities=14% Similarity=0.000 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHh----cccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhc-C-----CcHHHHHHHHHH
Q 012829 348 LMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL-G-----DTENAIKSMTEA 417 (455)
Q Consensus 348 ~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~-g-----~~~eA~~~l~~A 417 (455)
...+..+|+.+|.. .+++++|+.+++++++ . +.++. .+++||.+|... | ++++|+.++++|
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-----~-~~~~~---a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS-----L-SRTGY---AEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----T-SCTTH---HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-----c-CCCHH---HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 46666666666666 6666777666666553 1 34443 567777777653 3 677788777777
Q ss_pred HHh
Q 012829 418 VEI 420 (455)
Q Consensus 418 ~~i 420 (455)
.+.
T Consensus 195 ~~~ 197 (212)
T 3rjv_A 195 CLE 197 (212)
T ss_dssp HHH
T ss_pred HHc
Confidence 764
No 215
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.22 E-value=0.067 Score=44.92 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=72.2
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhc---ccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC-
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKK---LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH- 387 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~---~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h- 387 (455)
+....+...|-|+.|+.+...++.+... ++.| ..-.+++..++.++...|+|.+|..+++++|...+.+.-...
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp--~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP--PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344456778899999888777665421 1221 233567778999999999999999999999998874431111
Q ss_pred ----------------hHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829 388 ----------------PLLGLQYYTCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 388 ----------------p~~~~~l~~La~l~~~~g~~~eA~~~l~~ 416 (455)
+.-.-..|++|.-+..++++++|+..|+.
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 11124678999999999999999887653
No 216
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.00 E-value=0.053 Score=44.21 Aligned_cols=85 Identities=15% Similarity=0.104 Sum_probs=66.8
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----cccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
.+...+..++|+..++++.+. ....+..+|+.+|.. .+++++|+.+++++.+. .+ .
T Consensus 34 ~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~ 93 (138)
T 1klx_A 34 VSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------ND---Q 93 (138)
T ss_dssp HTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TC---H
T ss_pred HHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-------CC---H
Confidence 333445667788888777653 124678889999988 89999999999998763 33 3
Q ss_pred HHHHHHHHHhhh----cCCcHHHHHHHHHHHHh
Q 012829 392 LQYYTCGKLEWF----LGDTENAIKSMTEAVEI 420 (455)
Q Consensus 392 ~~l~~La~l~~~----~g~~~eA~~~l~~A~~i 420 (455)
..+++||.+|.. .+++++|+.++++|.+.
T Consensus 94 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 94 DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 568999999998 89999999999999874
No 217
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.93 E-value=0.038 Score=42.97 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ 380 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~ 380 (455)
.....+..+...|++++|+..+++++.+ .| ....++..++.+|...|++++|..++++++....
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDF-----DP---TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH-----CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3445566778899999999999999875 23 3355778899999999999999999999988654
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.76 E-value=0.2 Score=38.35 Aligned_cols=74 Identities=7% Similarity=-0.090 Sum_probs=56.3
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
++.+..++..|+|..|+.-++.++.....--. .......++..|+.+|..+|++++|+.+.++++. +.|+|+..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~-----l~P~~~~~ 82 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE-----LDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCCHHH
Confidence 34566778899999999999998876432110 1235567788999999999999999999999877 45677655
No 219
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.46 E-value=0.12 Score=48.47 Aligned_cols=108 Identities=11% Similarity=0.075 Sum_probs=71.9
Q ss_pred HHHhhhcC--ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhh-----cCCC
Q 012829 314 TLALTSCG--NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV-----YPQF 386 (455)
Q Consensus 314 a~~~~~~g--~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~-----~g~~ 386 (455)
++.....| ++++|..+|+++... ++ . ......+.+ +++.+|+|++|...++.++..+..+ ..++
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~----~p-~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQT----FP-T-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTT----SC-S-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHh----CC-C-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 43344444 889999988886432 22 1 011122222 7999999999999988766654222 1245
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 440 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~ 440 (455)
+|.+ +.+++.+...+|+ +|..++.++.+ .-|+||++.++..+=.
T Consensus 254 ~~~~---LaN~i~l~~~lgk--~a~~l~~qL~~-----~~P~hp~i~d~~~k~~ 297 (310)
T 3mv2_B 254 KPTF---LANQITLALMQGL--DTEDLTNQLVK-----LDHEHAFIKHHQEIDA 297 (310)
T ss_dssp HHHH---HHHHHHHHHHTTC--TTHHHHHHHHH-----TTCCCHHHHHHHHHHH
T ss_pred CHHH---HHHHHHHHHHhCh--HHHHHHHHHHH-----hCCCChHHHHHHHHHH
Confidence 6654 6677777777887 88888888876 3599999999876633
No 220
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.39 E-value=0.087 Score=49.11 Aligned_cols=92 Identities=12% Similarity=0.033 Sum_probs=69.7
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829 320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 399 (455)
Q Consensus 320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 399 (455)
.|++++|+.++++++++. |.+ ......++..+...|++++|..++++++... .+++.. ....+..++.
T Consensus 182 ~~~~~~A~~~~~~al~~~-----p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~l~p~~--~~~l~~~~~~ 249 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKY-----GDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLPPEK--SGEIWARFLA 249 (308)
T ss_dssp SCCHHHHHHHHHHHHHHH-----TTC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--SSCGGG--CHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--CCCHHH--HHHHHHHHHH
Confidence 689999999999998752 333 4556778888999999999999999987631 123221 2334667788
Q ss_pred HhhhcCCcHHHHHHHHHHHHhchh
Q 012829 400 LEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 400 l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
++...|+.++|...+.+|+++.-.
T Consensus 250 ~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 250 FESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHccc
Confidence 888899999999999999987643
No 221
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.23 E-value=0.3 Score=47.39 Aligned_cols=107 Identities=18% Similarity=0.055 Sum_probs=85.1
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH-
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL- 390 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~- 390 (455)
+.+.-+...|+|.+|.+++.+++.-..++ + +...+++++-.-+++|..++++.++..++.++..+...++ .||.+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-d-d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~ 179 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKL-D-DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPPKVQ 179 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTS-S-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcc-c-cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHH
Confidence 44556788999999999998887755443 2 2467778888888999999999999999999988877665 66754
Q ss_pred HHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhch
Q 012829 391 GLQYYTCGKLEW-FLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 391 ~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~ 422 (455)
|.....-|.++. ..++|++|-.++-+|..-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 666667788888 89999999999999875544
No 222
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.93 E-value=0.028 Score=37.83 Aligned_cols=37 Identities=30% Similarity=0.733 Sum_probs=30.1
Q ss_pred CccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHh
Q 012829 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQV 69 (455)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~ 69 (455)
...|..|.. .....||.|.. .|||-.|.+ .|+.+|.-
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~-~yCSl~C~k----~Hk~~C~~ 48 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRV-PYCSVVCFR----KHKEQCNP 48 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCC-EESSHHHHH----HHHHHCCC
T ss_pred CCccCcCcC-CCeeeCCCCCC-CeeCHHHHH----HHHhhCcC
Confidence 457999999 67889999997 599999975 57777754
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.64 E-value=0.35 Score=36.35 Aligned_cols=64 Identities=11% Similarity=-0.097 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829 323 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 399 (455)
Q Consensus 323 ~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 399 (455)
..+|..++++++++ +|.-.++...++..+...|+|++|+.++++++.. .|+ .|.+...-..+..
T Consensus 25 ~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~----~p~-~~~~~~i~~~I~~ 88 (93)
T 3bee_A 25 TDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS----NDP-NLDRVTIIESINK 88 (93)
T ss_dssp CHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC----CCT-TCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC-CccHHHHHHHHHH
Confidence 68999999999875 4445567777899999999999999999998773 444 5655544444443
No 224
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=94.49 E-value=0.16 Score=51.39 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=60.5
Q ss_pred cCChH-------HHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829 320 CGNHQ-------EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 392 (455)
Q Consensus 320 ~g~~~-------~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 392 (455)
.|+++ +|+.+++++++. ..|. -..+...++..+...|++++|...+++++.+ ++.+|. .
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~----~~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--~ 357 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAIST----LLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--L 357 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTT----TCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCHH--H
T ss_pred ccchhhhhhhhHHHHHHHHHHHHH----hCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCch--H
Confidence 57776 777777776531 1233 3455667888888899999999999988873 444442 3
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 393 QYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.+.++|.++...|++++|+..+++|++.
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5666677777777788888888887763
No 225
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.42 E-value=0.064 Score=44.98 Aligned_cols=49 Identities=8% Similarity=0.050 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc-----------cHHHHHHHHHHhhhhH
Q 012829 323 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-----------DWKEALAYCQLTIPVY 379 (455)
Q Consensus 323 ~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g-----------~~~~A~~~~~~~l~~~ 379 (455)
+++|+..+++++++ +|....++.+|+.+|..+| +|++|++++++++++-
T Consensus 62 ~~eAi~~le~AL~l--------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 45888888888876 4556778889999998875 8999999999998853
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.41 E-value=0.76 Score=36.69 Aligned_cols=88 Identities=14% Similarity=0.047 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829 347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 425 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~ 425 (455)
...++..++|.++....+-.. -++.+.+++.++...+| ..--.+|.||..++.+|+|++|..++...+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~----- 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----- 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----
Confidence 556788888888887665333 13344445555555557 56688999999999999999999998887773
Q ss_pred CCCChhHHHHHHHHHHHH
Q 012829 426 GTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 426 G~~hp~~~~~~~~l~~~~ 443 (455)
-|+++...++...+++..
T Consensus 104 eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 104 EPQNNQAKELERLIDKAM 121 (126)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 488888888888777654
No 227
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=94.40 E-value=0.014 Score=39.52 Aligned_cols=36 Identities=28% Similarity=0.696 Sum_probs=29.1
Q ss_pred CccCccccC---cCCCcCCCCCCccccCCHHHhHhhhhhhHHhhH
Q 012829 27 ISRCDGCFA---SSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68 (455)
Q Consensus 27 ~~~C~~C~~---~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~ 68 (455)
...|..|.. ......||.|+. .|||..|.+ .|+ +|.
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~-rYCSl~C~k----~Hk-~Cs 49 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNA-PYCSLRCYR----THG-TCA 49 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCC-EESSHHHHH----HHC-CGG
T ss_pred CCcCcCCCCCcCCCccccCcCCCC-CccChHHHH----HHh-HhC
Confidence 468999986 345899999997 599999987 476 775
No 228
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.40 E-value=0.29 Score=48.84 Aligned_cols=80 Identities=18% Similarity=0.024 Sum_probs=39.4
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----cccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829 320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 395 (455)
Q Consensus 320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 395 (455)
.+++++|+..++++.+. .+ ..+...|+..|.. .+++++|+.+++++.+. .+ ...++
T Consensus 92 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~ 151 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALK-------GL---PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQ 151 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHH
T ss_pred CCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHH
Confidence 45666666666655432 11 2334455555555 55666666665555432 12 12344
Q ss_pred HHHHHhhh----cCCcHHHHHHHHHHHH
Q 012829 396 TCGKLEWF----LGDTENAIKSMTEAVE 419 (455)
Q Consensus 396 ~La~l~~~----~g~~~eA~~~l~~A~~ 419 (455)
+||.++.. .+++++|+.++++|.+
T Consensus 152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 152 SMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 44555444 4445555555554443
No 229
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.36 E-value=0.32 Score=48.52 Aligned_cols=94 Identities=11% Similarity=-0.004 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhh----cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----cccHHHHHHHHHHhhhh
Q 012829 307 VNILSKKTLALTS----CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPV 378 (455)
Q Consensus 307 ~~~l~~~a~~~~~----~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~ 378 (455)
.......+..+.. .+++++|+..++++.+. .+ ..+...|+..|.. .+++++|+.+++++.+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------GY---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 3444455555555 68999999999888653 12 4577889999998 89999999999998762
Q ss_pred HHhhcCCCChHHHHHHHHHHHHhhh----cCCcHHHHHHHHHHHHh
Q 012829 379 YQRVYPQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVEI 420 (455)
Q Consensus 379 ~~~~~g~~hp~~~~~l~~La~l~~~----~g~~~eA~~~l~~A~~i 420 (455)
.++ ..++.||.++.. .+++++|+.++++|.+.
T Consensus 109 -------~~~---~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 109 -------GLP---QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp -------TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -------CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 344 557889999998 88999999999999763
No 230
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.60 E-value=0.2 Score=40.63 Aligned_cols=77 Identities=10% Similarity=0.004 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh
Q 012829 322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 401 (455)
Q Consensus 322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~ 401 (455)
++++|+..++++.+.- ++.-. |+..|...+..++|+++++++.+. .|| ..+++||.++
T Consensus 10 d~~~A~~~~~~aa~~g-------~~~a~-----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~---~a~~~Lg~~y 67 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-------EMFGC-----LSLVSNSQINKQKLFQYLSKACEL-------NSG---NGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHTT-------CTTHH-----HHHHTCTTSCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-------CHhhh-----HHHHHHcCCCHHHHHHHHHHHHcC-------CCH---HHHHHHHHHH
Confidence 5567777777775431 22222 788888888899999999998774 343 6689999999
Q ss_pred hh----cCCcHHHHHHHHHHHHh
Q 012829 402 WF----LGDTENAIKSMTEAVEI 420 (455)
Q Consensus 402 ~~----~g~~~eA~~~l~~A~~i 420 (455)
.. .+++++|+.++++|.+.
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HcCCCCCccHHHHHHHHHHHHcC
Confidence 98 88999999999999863
No 231
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.05 E-value=0.39 Score=47.54 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc----ccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829 322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL----EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 397 (455)
Q Consensus 322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~----g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 397 (455)
++++|+..++++.+. .+.......+|+.+|... +++++|+.+++++. +.+| ..+++|
T Consensus 194 ~~~~A~~~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--------~g~~---~a~~~L 254 (452)
T 3e4b_A 194 QQAELLKQMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--------PGYP---ASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--------GGST---HHHHHH
T ss_pred cHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--------CCCH---HHHHHH
Confidence 556666665555432 111222234455554332 45555555555443 1222 234455
Q ss_pred HHH-h--hhcCCcHHHHHHHHHHH
Q 012829 398 GKL-E--WFLGDTENAIKSMTEAV 418 (455)
Q Consensus 398 a~l-~--~~~g~~~eA~~~l~~A~ 418 (455)
|.+ + ...+++++|+.++++|.
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 554 2 23455555555555544
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.04 E-value=0.4 Score=44.27 Aligned_cols=96 Identities=11% Similarity=-0.019 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-----ccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829 324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 398 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-----g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La 398 (455)
.+|..+.++++++.. +..-..++..|+..|... |+.++|.+++++++.+. |++ .....+..|
T Consensus 180 ~~A~a~lerAleLDP------~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-----P~~--~id~~v~YA 246 (301)
T 3u64_A 180 HAAVMMLERACDLWP------SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-----SAH--DPDHHITYA 246 (301)
T ss_dssp HHHHHHHHHHHHHCT------THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-----CTT--CSHHHHHHH
T ss_pred HHHHHHHHHHHHhCC------CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-----CCC--CchHHHHHH
Confidence 355556666666521 122345777888888885 99999999999999854 222 124466668
Q ss_pred HHhhh-cCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829 399 KLEWF-LGDTENAIKSMTEAVEILRITHGTNSPFMK 433 (455)
Q Consensus 399 ~l~~~-~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~ 433 (455)
..+.. +|++++|..+|++|+++=-.. .|+.++.-
T Consensus 247 ~~l~~~~gd~~~a~~~L~kAL~a~p~~-~P~~~lan 281 (301)
T 3u64_A 247 DALCIPLNNRAGFDEALDRALAIDPES-VPHNKLLV 281 (301)
T ss_dssp HHTTTTTTCHHHHHHHHHHHHHCCGGG-CSSCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCC-CCChhHHH
Confidence 87777 599999999999999843332 35555443
No 233
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.03 E-value=0.33 Score=54.47 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=67.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh---------
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR--------- 381 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~--------- 381 (455)
...|..+...|+|++|+..|..+ .....++.+|..+|++++|++.++++.+..-.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 44677778888888888888775 23556888899999999999999888554220
Q ss_pred --------hcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 382 --------VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 382 --------~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.+|-....-+-.+..++..|..+|.+++|+.++++|+.+
T Consensus 1263 ~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred hhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 112111111234668888899999999999999998754
No 234
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.78 E-value=0.46 Score=53.29 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=65.2
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhh--ccc-------C-----CccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQK--KLY-------H-----PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY 379 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~--~~l-------~-----~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~ 379 (455)
|..+...|.+++|..+|+++..... .++ . ......-.++..+|.++...|+|++|++.+.++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 5556677777787777765421100 000 0 012233456778899999999999999988664
Q ss_pred HhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 380 QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 380 ~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
++| ..++++|..+..+|++++|+++|..|.+..
T Consensus 1132 ------dD~---say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1132 ------DDP---SSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred ------CCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 333 446778999999999999999999988754
No 235
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=92.58 E-value=0.21 Score=49.18 Aligned_cols=92 Identities=14% Similarity=0.046 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829 304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 383 (455)
Q Consensus 304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 383 (455)
...+......|..+...|++++|++.++++. + ..+...+..++...|+|+.|...... +
T Consensus 145 Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~~~~l~--------L 203 (449)
T 1b89_A 145 YNNVSNFGRLASTLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQMCGLH--------I 203 (449)
T ss_dssp HHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHHHTTTT--------T
T ss_pred HHHhhhHHHHHHHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHHHHHHH--------H
Confidence 3344555667888888999999999888771 1 34556778889999999999554433 1
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 384 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 384 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
. .||.- +..++.+|..+|++++|..+|++|+.+
T Consensus 204 ~-~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 204 V-VHADE---LEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp T-TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred H-hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 1 45544 335788899999999999999999753
No 236
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=92.55 E-value=1 Score=39.68 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=48.6
Q ss_pred cccHHHHHHHHHHhhhhHHhhcCCCChHH-HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 362 LEDWKEALAYCQLTIPVYQRVYPQFHPLL-GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 362 ~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
.|+-+.|...++.+.++...-+||.||.+ |+.++--.-.|.-+++.++|..+-++|.++.+
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~ 199 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILE 199 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 35667899999999999998899999975 55555444445568999999999999988753
No 237
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=92.18 E-value=1.6 Score=40.94 Aligned_cols=76 Identities=18% Similarity=0.129 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc-cCCCChhHHHHHHHHHHHHHH
Q 012829 367 EALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 367 ~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~-~G~~hp~~~~~~~~l~~~~~~ 445 (455)
.++.++.+++...++.|+..|. ..+.-+|.-++..+++.||...+.+|.++.+.. |..+.. ++...+-++..+
T Consensus 275 ~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDe---EIYKEf~eIAne 348 (472)
T 3re2_A 275 PAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDE---EMYKEFHEIAND 348 (472)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGH---HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHH
Confidence 3889999999999999998885 446677888999999999999999999887765 554432 555555555555
Q ss_pred Hhh
Q 012829 446 ASY 448 (455)
Q Consensus 446 ~~~ 448 (455)
+=+
T Consensus 349 liP 351 (472)
T 3re2_A 349 LIP 351 (472)
T ss_dssp HHH
T ss_pred Hhh
Confidence 444
No 238
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.17 E-value=1.6 Score=36.11 Aligned_cols=72 Identities=10% Similarity=-0.022 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhcC---ChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829 308 NILSKKTLALTSCG---NHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 383 (455)
Q Consensus 308 ~~l~~~a~~~~~~g---~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 383 (455)
+..++-|+.+..++ +.++++.+++.+++.. ++ .--+.++.|+..|.+.|+|++|+++++.++++-
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie---- 101 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE---- 101 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----
Confidence 45566777777766 5668888887776531 22 345778999999999999999999999988843
Q ss_pred CCCChHHH
Q 012829 384 PQFHPLLG 391 (455)
Q Consensus 384 g~~hp~~~ 391 (455)
|+|++..
T Consensus 102 -P~n~QA~ 108 (152)
T 1pc2_A 102 -PQNNQAK 108 (152)
T ss_dssp -TTCHHHH
T ss_pred -CCCHHHH
Confidence 5666543
No 239
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.81 E-value=1.6 Score=42.85 Aligned_cols=103 Identities=6% Similarity=-0.097 Sum_probs=77.3
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
.+.|.-+...|++++|.+.+.++...... ....++..-.+++++...++|..+..+..++...... ..+|.+
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~---~~d~~~ 206 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAIS-----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK---GGDWER 206 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT---CCCTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc---CCCHHH
Confidence 34566677889999999999888765432 2456778888899999999999999999998665432 344543
Q ss_pred -HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 391 -GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 391 -~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
+....--|.+++..++|.+|-.++.++....
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 4444556888899999999999988876543
No 240
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=91.51 E-value=0.74 Score=46.33 Aligned_cols=81 Identities=15% Similarity=0.055 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-------cccHH-------HHHHHHHHhhhhHHhhcCCCChHH
Q 012829 325 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-------LEDWK-------EALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 325 ~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~-------~g~~~-------~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
.++.+|++++... |.+ ..+...++..+.. .|+++ +|...+++++.. ..|.-
T Consensus 256 ~a~~~y~~al~~~-----p~~---~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-------~~p~~ 320 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-----GHH---PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLKKN 320 (530)
T ss_dssp HHHHHHHHHHHHH-----TTC---HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-------TCSSC
T ss_pred HHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-------hCccc
Confidence 5667788877642 333 3455566666664 78987 677776666652 12333
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...++.+|.++...|++++|...+++|+++
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 456788899999999999999999999985
No 241
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=91.48 E-value=0.41 Score=45.92 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..++..++..+...|++++|..+.++++..- + + ...+..+|+++...|++++|++.+.+|+.+
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~-s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M-S---WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C-C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3445556666677799999999999999863 2 2 356678899999999999999999999984
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.40 E-value=3.3 Score=33.20 Aligned_cols=84 Identities=15% Similarity=0.011 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhccc---HHHHHHHHHHhhhhHHhhcCCCCh-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 348 LMQTREKLIKILMELED---WKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 348 ~~~~~~~L~~~~~~~g~---~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
..++..++|..+....+ ..+++.++..++. .+| ..--.+|-||.-+..+|+|++|..+....++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~--------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---- 106 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---- 106 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----
Confidence 34777788888877643 4456665554433 235 4567789999999999999999999887776
Q ss_pred ccCCCChhHHHHHHHHHHHHH
Q 012829 424 THGTNSPFMKELILKLEEAQA 444 (455)
Q Consensus 424 ~~G~~hp~~~~~~~~l~~~~~ 444 (455)
.-|+.....++...+++...
T Consensus 107 -~eP~N~QA~~Lk~~Ie~ki~ 126 (134)
T 3o48_A 107 -HERNNKQVGALKSMVEDKIQ 126 (134)
T ss_dssp -TCTTCHHHHHHHHHHHHHHH
T ss_pred -hCCCCHHHHHHHHHHHHHHH
Confidence 34888888888888777654
No 243
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=91.15 E-value=0.49 Score=46.63 Aligned_cols=103 Identities=10% Similarity=-0.020 Sum_probs=60.9
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
..+..+...|.|++|...|..+ .....|+.++..+|+|++|++.++++ .+|.+
T Consensus 127 ~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA----------~~~~~- 179 (449)
T 1b89_A 127 QVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKA----------NSTRT- 179 (449)
T ss_dssp ----------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHH----------TCHHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHc----------CCchh-
Confidence 3455677889999999988765 23556899999999999999998887 23422
Q ss_pred HHHHHHHHHhhhcCCcHHHH-----------------HH------HHHHHHhchhccCCCChhHHHHHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAI-----------------KS------MTEAVEILRITHGTNSPFMKELILKLEEAQA 444 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~-----------------~~------l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~ 444 (455)
+..+...+...|+++.|. .+ +.+|+..++..+|-+ +.--.+...|..+..
T Consensus 180 --Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 180 --WKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp --HHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 334444555555554443 33 445788888888877 333444444444433
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.09 E-value=1.3 Score=37.02 Aligned_cols=70 Identities=20% Similarity=0.150 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc-----------------cccHHHHHHHHHHHHHhcccHHH
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-----------------SVNLMQTREKLIKILMELEDWKE 367 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~-----------------~~~~~~~~~~L~~~~~~~g~~~~ 367 (455)
.+++.+.-.|+.++.+|+|..|...|++++...+.+.-.. ...=.+.++.++..|..++++.+
T Consensus 61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~ 140 (167)
T 3ffl_A 61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD 140 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence 3455666678888999999999999999988765432111 11223688999999999999999
Q ss_pred HHHHHHH
Q 012829 368 ALAYCQL 374 (455)
Q Consensus 368 A~~~~~~ 374 (455)
|+...+.
T Consensus 141 Ai~~Le~ 147 (167)
T 3ffl_A 141 AIAILDG 147 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9998554
No 245
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=90.68 E-value=2.5 Score=40.54 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc-cCCCCh-hHHHHH
Q 012829 367 EALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTNSP-FMKELI 436 (455)
Q Consensus 367 ~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~-~G~~hp-~~~~~~ 436 (455)
.+++++.+++.+.+++|...|. .-|.-+|--++..+++.+|...+.+|.++++.. |+.+.. ++++++
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~ 350 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFF 350 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHH
Confidence 4778999999999999998884 446667888888999999999999999888776 665543 334443
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.62 E-value=4.4 Score=32.91 Aligned_cols=84 Identities=15% Similarity=0.010 Sum_probs=61.2
Q ss_pred cHHHHHHHHHHHHHhccc---HHHHHHHHHHhhhhHHhhcCCCCh-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 347 NLMQTREKLIKILMELED---WKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g~---~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
...++..++|..+....+ ..+++.+++.++. .+| ..--.+|-||.-+..+|+|++|..+....++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--- 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--- 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh---
Confidence 456777788888877654 4456666555444 233 3456788999999999999999999888777
Q ss_pred hccCCCChhHHHHHHHHHHHH
Q 012829 423 ITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 423 ~~~G~~hp~~~~~~~~l~~~~ 443 (455)
.-|+.....++...+++..
T Consensus 106 --~eP~n~QA~~Lk~~Ie~~i 124 (144)
T 1y8m_A 106 --HERNNKQVGALKSMVEDKI 124 (144)
T ss_dssp --TCCCCHHHHHHHHHHHHHH
T ss_pred --cCCCcHHHHHHHHHHHHHH
Confidence 3588888888887777654
No 247
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=90.60 E-value=1.9 Score=42.53 Aligned_cols=92 Identities=10% Similarity=0.015 Sum_probs=61.6
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc---cHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829 312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE---DWKEALAYCQLTIPVYQRVYPQFHP 388 (455)
Q Consensus 312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g---~~~~A~~~~~~~l~~~~~~~g~~hp 388 (455)
..+..+...+.++++....+...... ...++. +...|+.+|...| ++++|+.+++++.+ .| |
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a----~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~-----~g---~ 210 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAA----LNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVS-----RG---T 210 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHH----TTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----TT---C
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHH----HcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHH-----CC---C
Confidence 33444455555555554433322211 122333 6788999999999 99999999998876 23 3
Q ss_pred HHHHHHHHHHHHhhhc----CCcHHHHHHHHHHH
Q 012829 389 LLGLQYYTCGKLEWFL----GDTENAIKSMTEAV 418 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~----g~~~eA~~~l~~A~ 418 (455)
..+..+++||.++... +++++|+.++++|.
T Consensus 211 ~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 211 VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 3355578899998765 78999999999985
No 248
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=90.26 E-value=5.6 Score=35.59 Aligned_cols=80 Identities=10% Similarity=0.011 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhchh---ccCCCChhHHHHHHHHHH
Q 012829 366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLEE 441 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~~---~~G~~hp~~~~~~~~l~~ 441 (455)
+.|...++.+.++...-+||.||.+.-...|.+..|+ -+++.++|..+-++|.+-... +++.+ .+++....++-
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~eld~l~ee--sykDstlImqL 225 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNED--SYKDSTLIMQL 225 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTT--THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCcc--chHHHHHHHHH
Confidence 4677888899998888999999976444445555555 489999988877766543222 24444 36777777777
Q ss_pred HHHHHh
Q 012829 442 AQAEAS 447 (455)
Q Consensus 442 ~~~~~~ 447 (455)
++..+.
T Consensus 226 LRDNLt 231 (248)
T 3uzd_A 226 LRDNLT 231 (248)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 249
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=89.97 E-value=3.5 Score=39.44 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc-cCCC-ChhHHHHHH
Q 012829 367 EALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTN-SPFMKELIL 437 (455)
Q Consensus 367 ~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~-~G~~-hp~~~~~~~ 437 (455)
.++.++.+++...+++|+..|. .-|.-+|.-++..+++.||...+.+|.++.+.. |..+ -.+++|.++
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~e 366 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFE 366 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 3889999999999999998885 446677888999999999999999999888765 5433 334454443
No 250
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=89.88 E-value=2.1 Score=38.04 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhchhc---cCCCChhHHHHHHHHHH
Q 012829 366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRIT---HGTNSPFMKELILKLEE 441 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~~~---~G~~hp~~~~~~~~l~~ 441 (455)
+.|...++.+.++...-+||.||.+.-...|.+..|+ -+++.++|..+-++|.+-.... ++.+ .+++....++-
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~eld~l~ee--sykDstlImqL 227 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSED--SYKDSTLIMQL 227 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChh--hhHHHHHHHHH
Confidence 5677888889998888999999976444444555554 5799999888777665432222 3333 46776666666
Q ss_pred HHHHH
Q 012829 442 AQAEA 446 (455)
Q Consensus 442 ~~~~~ 446 (455)
++..+
T Consensus 228 LRDNL 232 (236)
T 3iqu_A 228 LRDNL 232 (236)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 251
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=89.77 E-value=1.4 Score=41.23 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=56.6
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhc-ccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829 313 KTLALTSCGNHQEVVSTYKMIEKLQKK-LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 391 (455)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~-~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 391 (455)
.+..+...|+.+.|.++++...+.... +++ .+..++.............+++++|..+++.+.. .+|.+ ...
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~-~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~----~~p~~--~~~ 214 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNYTNAIEDTVSG-DNEMILNLAESYIKFATNKETATSNFYYYEELSQ----TFPTW--KTQ 214 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT----TSCSH--HHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCcccccc-chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hCCCc--ccH
Confidence 344566789999999988777553210 000 1222333222222222333489999998888654 23321 122
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
..+++ ++..+|++++|+..|+++++
T Consensus 215 ~lLln---~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 215 LGLLN---LHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHH---HHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHH
Confidence 33444 78899999999999986554
No 252
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=89.51 E-value=2.4 Score=37.66 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhchh---ccCCCChhHHHHHHHHHH
Q 012829 366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLEE 441 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~~---~~G~~hp~~~~~~~~l~~ 441 (455)
+.|...++.+.++.+.-+||.||.+.-...+.+..|+ -+++.++|..+-++|.+-... +++.+ .+++....++-
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~eld~l~ee--sykDstlImqL 224 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEE--SYKDSTLIMQL 224 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTT--THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccChh--hhHHHHHHHHH
Confidence 4677888999998888899999976444445555554 589999988876665543222 23444 36777666666
Q ss_pred HHHHH
Q 012829 442 AQAEA 446 (455)
Q Consensus 442 ~~~~~ 446 (455)
++..+
T Consensus 225 LrDNL 229 (234)
T 2br9_A 225 LRDNL 229 (234)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 253
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=88.73 E-value=6.2 Score=35.61 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhhHHhhc--CCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHh
Q 012829 366 KEALAYCQLTIPVYQRVY--PQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~--g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i 420 (455)
+.|.+.|+.+.++.+.-+ ||.||.+.-...|.++.|+ -+++.++|..+-++|.+-
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567788889999888889 9999986444555666655 589999999998888765
No 254
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=88.08 E-value=3.5 Score=37.13 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhh-cCCcHHHHHHHHHHHHhchh---ccCCCChhHHHHHHHHHH
Q 012829 366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLEE 441 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~~A~~i~~~---~~G~~hp~~~~~~~~l~~ 441 (455)
+.|...++.+.++...-+||.||.+.-...|.+..|+. +++.++|..+-++|.+-... +++.++ +++....++-
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~eLd~L~ees--ykDstlImQL 250 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEES--YKDSTLIMQL 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhh--hHHHHHHHHH
Confidence 45778888888888889999999864444455665554 79999988876666543222 345554 6787777777
Q ss_pred HHHHHh
Q 012829 442 AQAEAS 447 (455)
Q Consensus 442 ~~~~~~ 447 (455)
++..+.
T Consensus 251 LRDNLt 256 (261)
T 3ubw_A 251 LRDNLT 256 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.02 E-value=17 Score=35.08 Aligned_cols=80 Identities=18% Similarity=0.119 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829 352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 431 (455)
Q Consensus 352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~ 431 (455)
-..|+..|...|+|.+|+....+++.-..++.. -..+.-.+..-.+++..++++.++..+|.+|..+....+ .||.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd--~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~ 177 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDD--KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPPK 177 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC--THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCHH
Confidence 347999999999999999999999888777543 233444455567889999999999999999999887654 6776
Q ss_pred HHHH
Q 012829 432 MKEL 435 (455)
Q Consensus 432 ~~~~ 435 (455)
+...
T Consensus 178 i~a~ 181 (394)
T 3txn_A 178 VQGA 181 (394)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.22 E-value=8.8 Score=37.73 Aligned_cols=103 Identities=9% Similarity=-0.052 Sum_probs=73.2
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCC-ccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH-HH
Q 012829 314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHP-FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LG 391 (455)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~-~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~ 391 (455)
|..+...|++.+|..++..+..- ..+. +....++..-..++.|...+||.+|..+..++....... +.+|. .+
T Consensus 144 a~i~e~~g~~~eA~~iL~~l~~E---t~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~ 218 (445)
T 4b4t_P 144 VEIKKEEGKIDEAADILCELQVE---TYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKL 218 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---HCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHH
Confidence 34455779999999887776432 2222 234556777778889999999999999988864432222 34554 45
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829 392 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 421 (455)
Q Consensus 392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~ 421 (455)
..+...|.++...++|.+|-.+|.++.+..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 666778999999999999999888876543
No 257
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=87.16 E-value=2.9 Score=37.74 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhchh---ccCCCChhHHHHHHHHHH
Q 012829 366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLEE 441 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~~---~~G~~hp~~~~~~~~l~~ 441 (455)
+.|...|+.+.++.+.-+||.||.+.-...+.+..|+ -+++.++|..+-++|.+-... +++.++ +++....++-
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~Ees--ykDstlImqL 229 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEES--YKDSTLIMQL 229 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhccChhh--hHHHHHHHHH
Confidence 4677888899998888899999976444445555554 589999988876665533222 345554 3444444444
Q ss_pred HHHHH
Q 012829 442 AQAEA 446 (455)
Q Consensus 442 ~~~~~ 446 (455)
++..+
T Consensus 230 LRDNL 234 (260)
T 1o9d_A 230 LRDNL 234 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 258
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=85.76 E-value=5 Score=40.22 Aligned_cols=89 Identities=8% Similarity=0.009 Sum_probs=65.1
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 396 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 396 (455)
+...|++++|..+++...+. -+.|+ ..++..|+..|...|++++|.++++.+... | ..|.. ..+..
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~---g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----G-~~Pd~-~ty~~ 180 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAF---GIQPR----LRSYGPALFGFCRKGDADKAYEVDAHMVES-----E-VVPEE-PELAA 180 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHT---TCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----T-CCCCH-HHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHc---CCCCc----cceehHHHHHHHHCCCHHHHHHHHHHHHhc-----C-CCCCH-HHHHH
Confidence 44568999999998776542 12232 456778899999999999999998887642 2 22222 45777
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHH
Q 012829 397 CGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 397 La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
|-..+...|+.++|..+|++-.+
T Consensus 181 Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHH
Confidence 77888999999999999887543
No 259
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=85.30 E-value=5.4 Score=35.96 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhchh---ccCCCChhHHHHHHHHHH
Q 012829 366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLEE 441 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~~---~~G~~hp~~~~~~~~l~~ 441 (455)
+.|...|+.+.++. .-+||.||...-...+.+..|+ -+++.++|..+-++|.+-... +++.++ +++....++-
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~ees--ykDstlImqL 249 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLDKLSEDC--YKDSTLIMQL 249 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTGGGCCTTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhcCChhh--hHHHHHHHHH
Confidence 46777888888888 8899999976444445555555 589999988877666543222 344444 6777666666
Q ss_pred HHHHHh
Q 012829 442 AQAEAS 447 (455)
Q Consensus 442 ~~~~~~ 447 (455)
++..+.
T Consensus 250 LRDNLt 255 (260)
T 2npm_A 250 LRDNLT 255 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 260
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=84.70 E-value=4.3 Score=41.37 Aligned_cols=91 Identities=10% Similarity=-0.090 Sum_probs=61.0
Q ss_pred HHHhhhcC--ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc-cHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 314 TLALTSCG--NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 314 a~~~~~~g--~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
++.+...| +++++++.+.+++++ +|.+ ..+...-+.+....| .++++++++.++++. +|.-
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~-----d~~N---~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--------~p~n 177 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEA-----DERN---FHCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSN 177 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------TCCC
T ss_pred HHHHHHcccccHHHHHHHHHHHHhh-----cccc---ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------CCCC
Confidence 34444456 679999999888875 2333 334444555666778 899999999998873 3333
Q ss_pred HHHHHHHHHHhhhc--------------CCcHHHHHHHHHHHHh
Q 012829 391 GLQYYTCGKLEWFL--------------GDTENAIKSMTEAVEI 420 (455)
Q Consensus 391 ~~~l~~La~l~~~~--------------g~~~eA~~~l~~A~~i 420 (455)
..+++..+.++..+ +++++|++++.+|+.+
T Consensus 178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 34555556665553 5578899998888874
No 261
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=83.87 E-value=7.7 Score=36.01 Aligned_cols=106 Identities=11% Similarity=0.025 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC-hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc--cHHHHHHHHHH
Q 012829 298 EEIKKIASEVNILSKKTLALTSCGN-HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE--DWKEALAYCQL 374 (455)
Q Consensus 298 ~~~~~~~~e~~~l~~~a~~~~~~g~-~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g--~~~~A~~~~~~ 374 (455)
++.+.+...+.++. ..|. .++|+.++.+++.+ .|.|+. +.+.=+.++...| ++++++++...
T Consensus 30 ~~y~~~~~~~~a~~-------~~~e~s~~aL~~t~~~L~~-----nP~~~t---aWn~R~~~L~~l~~~~~~eeL~~~~~ 94 (306)
T 3dra_A 30 EDYKQIMGLLLALM-------KAEEYSERALHITELGINE-----LASHYT---IWIYRFNILKNLPNRNLYDELDWCEE 94 (306)
T ss_dssp HHHHHHHHHHHHHH-------HTTCCSHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HcCCCCHHHHHHHHHHHHH-----CcHHHH---HHHHHHHHHHHcccccHHHHHHHHHH
Confidence 45555555555433 3344 46899998888765 344443 3334445566677 99999999999
Q ss_pred hhhhHHhhcCCCChHHHHHHHHHHHHhhhc---CCcHHHHHHHHHHHHhch
Q 012829 375 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFL---GDTENAIKSMTEAVEILR 422 (455)
Q Consensus 375 ~l~~~~~~~g~~hp~~~~~l~~La~l~~~~---g~~~eA~~~l~~A~~i~~ 422 (455)
++....+.|..+|- ++..+..+. ... +++++++..+.+++++-.
T Consensus 95 ~L~~nPk~y~aW~~-R~~iL~~~~---~~l~~~~~~~~EL~~~~~~l~~~p 141 (306)
T 3dra_A 95 IALDNEKNYQIWNY-RQLIIGQIM---ELNNNDFDPYREFDILEAMLSSDP 141 (306)
T ss_dssp HHHHCTTCCHHHHH-HHHHHHHHH---HHTTTCCCTHHHHHHHHHHHHHCT
T ss_pred HHHHCcccHHHHHH-HHHHHHHHH---HhccccCCHHHHHHHHHHHHHhCC
Confidence 88754333332221 122221111 233 788899999888886543
No 262
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=83.72 E-value=15 Score=30.26 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHH--HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh
Q 012829 324 QEVVSTYKMIEKLQKKLYHPFSVNLM--QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 401 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l~~~~~~~~--~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~ 401 (455)
++.++.|+++.+.....-+-....++ -.++.+. ...+|.++|.+.++.++.+ |...|......|+-.
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~---~ei~D~d~aR~vy~~a~~~--------hKkFAKiwi~~AqFE 104 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL---KAIQEPDDARDYFQMARAN--------CKKFAFVHISFAQFE 104 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH---HHHHCGGGCHHHHHHHHHH--------CTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHH
Confidence 56667777766532111122222223 3333332 4458899999999998885 333366666678888
Q ss_pred hhcCCcHHHHHHHHHHHH
Q 012829 402 WFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 402 ~~~g~~~eA~~~l~~A~~ 419 (455)
..+|....|.+.|.+|+.
T Consensus 105 iRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 105 LSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHhc
Confidence 889999999999999998
No 263
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=83.41 E-value=9.1 Score=38.95 Aligned_cols=89 Identities=17% Similarity=0.064 Sum_probs=54.5
Q ss_pred hhhcCCh-HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhccc----------HHHHHHHHHHhhhhHHhhcCC
Q 012829 317 LTSCGNH-QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED----------WKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 317 ~~~~g~~-~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~----------~~~A~~~~~~~l~~~~~~~g~ 385 (455)
....|++ ++|+..+.+++.+ .|.++.. .+.=+.++...|+ +++|++++.+++...
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~-----nP~~~ta---W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~------ 103 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGA-----NPDFATL---WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN------ 103 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH-----CTTCHHH---HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCCCHHHHHHHHHHHHH-----CchhHHH---HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC------
Confidence 3344544 5778888888764 3444443 3333344444555 889999988888633
Q ss_pred CChHHHHHHHHHHHHhhhcC--CcHHHHHHHHHHHHhc
Q 012829 386 FHPLLGLQYYTCGKLEWFLG--DTENAIKSMTEAVEIL 421 (455)
Q Consensus 386 ~hp~~~~~l~~La~l~~~~g--~~~eA~~~l~~A~~i~ 421 (455)
|.-...++.-+-++...| ++++|.+.+.+|+++-
T Consensus 104 --pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d 139 (567)
T 1dce_A 104 --PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD 139 (567)
T ss_dssp --TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc
Confidence 222233444455666677 5588888888887753
No 264
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.05 E-value=6.6 Score=31.20 Aligned_cols=66 Identities=14% Similarity=0.017 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829 309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPV 378 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 378 (455)
+.++-|+.+..+.+..+.. +.+.+.+.++..+++ .--+.++.||..+.+.|+|.+|+.+++.+|.+
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~----~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIR----KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHH----HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHH----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4455666666554444321 222233334444434 44577889999999999999999999998873
No 265
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=82.05 E-value=5.7 Score=28.94 Aligned_cols=57 Identities=18% Similarity=0.092 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc--cCCCChhHHHHHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEAQAEA 446 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~--~G~~hp~~~~~~~~l~~~~~~~ 446 (455)
.|..+.+-|.-.-..|++++|..+|.+|++.+... +.++...-..+..++.+-..++
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RA 68 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRI 68 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 45566666777788999999999999999988764 5666665444666666655444
No 266
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=80.94 E-value=3 Score=41.77 Aligned_cols=61 Identities=18% Similarity=0.104 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
+.-.|+.+....+.+..|..+|.+++... |..|..++.||.+....|+.-+|+-+|.||+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 45567777777788899999999998854 78899999999999999999999999999885
No 267
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=80.71 E-value=6.7 Score=28.60 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc--cCCCChhHHHHHHHHHHHHHHHh
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEAQAEAS 447 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~--~G~~hp~~~~~~~~l~~~~~~~~ 447 (455)
|..+.+-|.-.-..|++++|..+|.+|++.+... +.++...-..+..++.+-..+++
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE 77 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIE 77 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5556666777788999999999999999988764 45665543446666666554443
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.49 E-value=28 Score=32.66 Aligned_cols=27 Identities=30% Similarity=0.175 Sum_probs=19.5
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHH
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSM 414 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l 414 (455)
..||.+ ...+|.+++..+++.+|+.++
T Consensus 133 ~Gdp~L---H~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPEL---HHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHH---HHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHH---HHHHHHHHHccCCHHHHHHHH
Confidence 445533 345688889889999988875
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.90 E-value=35 Score=31.64 Aligned_cols=22 Identities=14% Similarity=-0.210 Sum_probs=15.8
Q ss_pred HHHHHHHhhhcCCcHHHHHHHH
Q 012829 394 YYTCGKLEWFLGDTENAIKSMT 415 (455)
Q Consensus 394 l~~La~l~~~~g~~~eA~~~l~ 415 (455)
...+|..++.-|++.+|+.++-
T Consensus 137 H~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 137 HNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHH
Confidence 4456777777888888887763
No 270
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=78.43 E-value=9 Score=40.21 Aligned_cols=92 Identities=13% Similarity=0.039 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhh--hHHhhcC-CCChHHHHHHHHH---------H-HHhhhcCCcHHHHHHHHH
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIP--VYQRVYP-QFHPLLGLQYYTC---------G-KLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~--~~~~~~g-~~hp~~~~~l~~L---------a-~l~~~~g~~~eA~~~l~~ 416 (455)
.....|+..+...|+++.|.+.+.++-+ ....++- ...+.....+-.+ | .++..+|++++|+++|.+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567899999999999999998887522 1112211 2222221111111 2 245557899999998764
Q ss_pred ------HHHhchhccCCCChhHHHHHHHHHHH
Q 012829 417 ------AVEILRITHGTNSPFMKELILKLEEA 442 (455)
Q Consensus 417 ------A~~i~~~~~G~~hp~~~~~~~~l~~~ 442 (455)
|+.+. ++||+.+..+.++..+..+-
T Consensus 762 ~~~~~~A~~lA-~~~~~~~~~i~~~~~~~~~~ 792 (814)
T 3mkq_A 762 SQRFSEAAFLG-STYGLGDNEVNDIVTKWKEN 792 (814)
T ss_dssp TTCHHHHHHHH-HHTTCCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHH-HHhCCChHHHHHHHHHHHHH
Confidence 55544 45888875555665555543
No 271
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.26 E-value=7.7 Score=31.08 Aligned_cols=63 Identities=13% Similarity=-0.049 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhcCChH---HHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 308 NILSKKTLALTSCGNHQ---EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 308 ~~l~~~a~~~~~~g~~~---~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
++.++-|+.+..+.+.+ +++.+++.+... +....-+.++-||..+.++|+|++|..+++.+|.
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34466677766655433 445555444431 1123457788899999999999999999998877
No 272
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.36 E-value=17 Score=34.86 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=56.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC-CCCh
Q 012829 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHP 388 (455)
Q Consensus 310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~hp 388 (455)
+...+......|++.+++..++.++.. +|.+ =..+..|+.++...|+..+|++.|++....+..-+| ...|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-----~P~~---E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-----HPYR---EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 334455567889999999877776543 3333 345667889999999999999999999998888888 5666
Q ss_pred HHHHHH
Q 012829 389 LLGLQY 394 (455)
Q Consensus 389 ~~~~~l 394 (455)
.+-..+
T Consensus 246 ~l~~l~ 251 (388)
T 2ff4_A 246 TLRALN 251 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 664333
No 273
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=76.53 E-value=28 Score=34.59 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
.+++.|+..|...|++++|.++++.+.. .| .-|. ...+..|-..+...|+.++|..++.+-.+
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~-----~g-~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKA-----FG-IQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-----TT-CCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC-CCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4567789999999999999999887654 12 1122 24566677778899999999999887543
No 274
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=75.90 E-value=12 Score=35.66 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
|.-+..+..+|.+++..|++++|+.++++|+++
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L 306 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL 306 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 334456777788888889999999999999997
No 275
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.81 E-value=6.4 Score=39.33 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=59.8
Q ss_pred hhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC---ChHHHHHHHHHHHHhhhcCCcHHHHHH
Q 012829 337 QKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF---HPLLGLQYYTCGKLEWFLGDTENAIKS 413 (455)
Q Consensus 337 ~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~---hp~~~~~l~~La~l~~~~g~~~eA~~~ 413 (455)
+...+.-+...-+.+.+.|.+.|...+.++.|..+..++ .+|.. ..+.+-.+|-+|.++..+++|.+|..+
T Consensus 219 rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~------~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~ 292 (523)
T 4b4t_S 219 KIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKL------EYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEY 292 (523)
T ss_dssp HHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHH------CSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcC------cCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344455444455566778889999999999999986654 36643 346678888999999999999999999
Q ss_pred HHHHHH
Q 012829 414 MTEAVE 419 (455)
Q Consensus 414 l~~A~~ 419 (455)
|..|+.
T Consensus 293 L~~A~r 298 (523)
T 4b4t_S 293 IIAAIR 298 (523)
T ss_dssp HHHHTS
T ss_pred HHHHHH
Confidence 999875
No 276
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.58 E-value=6.4 Score=31.96 Aligned_cols=70 Identities=11% Similarity=-0.059 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhcCChH---HHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829 309 ILSKKTLALTSCGNHQ---EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 385 (455)
Q Consensus 309 ~l~~~a~~~~~~g~~~---~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 385 (455)
+.++-|+.+..+.+.+ +++.+++.+... +| ...-+.++-||..+.++|+|++|..+++.+|++ -|
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~-----eP 108 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-----ER 108 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-----CC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----Cc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CC
Confidence 4456666666554333 445555554431 11 135567888999999999999999999988872 34
Q ss_pred CChHH
Q 012829 386 FHPLL 390 (455)
Q Consensus 386 ~hp~~ 390 (455)
.+++.
T Consensus 109 ~n~QA 113 (144)
T 1y8m_A 109 NNKQV 113 (144)
T ss_dssp CCHHH
T ss_pred CcHHH
Confidence 55544
No 277
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=75.52 E-value=27 Score=33.03 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc-cHHHHHHHHHHhh
Q 012829 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTI 376 (455)
Q Consensus 298 ~~~~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l 376 (455)
.+.+.+...++.+.. ..+..++|+.++.+++.+ .|.|+..-..+ ..++...| +++++++++..++
T Consensus 51 ~~y~~~~~~~r~~~~------~~e~se~AL~lt~~~L~~-----nP~~ytaWn~R---~~iL~~l~~~l~eEL~~~~~~L 116 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAA------KEEKSERALELTEIIVRM-----NPAHYTVWQYR---FSLLTSLNKSLEDELRLMNEFA 116 (349)
T ss_dssp HHHHHHHHHHHHHHH------TTCCSHHHHHHHHHHHHH-----CTTCHHHHHHH---HHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHh-----CchhHHHHHHH---HHHHHHhhhhHHHHHHHHHHHH
Confidence 455555555554432 234556888888888764 34454443333 34445567 5999999999988
Q ss_pred hhHHhhcCCCChHHHHHHHHHHHHhhhc-C-CcHHHHHHHHHHHHh
Q 012829 377 PVYQRVYPQFHPLLGLQYYTCGKLEWFL-G-DTENAIKSMTEAVEI 420 (455)
Q Consensus 377 ~~~~~~~g~~hp~~~~~l~~La~l~~~~-g-~~~eA~~~l~~A~~i 420 (455)
.... .+. ...+.-+.++..+ + ++++++..+.+++++
T Consensus 117 ~~nP-----Kny---~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~ 154 (349)
T 3q7a_A 117 VQNL-----KSY---QVWHHRLLLLDRISPQDPVSEIEYIHGSLLP 154 (349)
T ss_dssp HTTC-----CCH---HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS
T ss_pred HhCC-----CcH---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence 6332 222 2233334444444 5 788888888887754
No 278
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=73.21 E-value=20 Score=33.18 Aligned_cols=94 Identities=9% Similarity=-0.050 Sum_probs=61.4
Q ss_pred HHHhhhcC--ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHH-Hhc---ccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829 314 TLALTSCG--NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL-MEL---EDWKEALAYCQLTIPVYQRVYPQFH 387 (455)
Q Consensus 314 a~~~~~~g--~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~-~~~---g~~~~A~~~~~~~l~~~~~~~g~~h 387 (455)
+..+...| ++++++..+..++. ..|.++.+-.-+..+..-. ... ++++++++++.+++... |.+
T Consensus 74 ~~~L~~l~~~~~~eeL~~~~~~L~-----~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~----pkn- 143 (306)
T 3dra_A 74 FNILKNLPNRNLYDELDWCEEIAL-----DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD----PKN- 143 (306)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHH-----HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC----TTC-
T ss_pred HHHHHHcccccHHHHHHHHHHHHH-----HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC----CCC-
Confidence 44445556 88999998888875 3566666655555554222 334 78999999999988733 322
Q ss_pred hHHHHHHHHHHHHhhhcCCcH--HHHHHHHHHHHh
Q 012829 388 PLLGLQYYTCGKLEWFLGDTE--NAIKSMTEAVEI 420 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~--eA~~~l~~A~~i 420 (455)
-...+.-+-++...|+++ ++++++.+++++
T Consensus 144 ---y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 144 ---HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp ---HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 233444455566667777 888888888753
No 279
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=71.89 E-value=1.3 Score=30.11 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=22.2
Q ss_pred hCccCCCCCCccccc----CCCCCCcccCCCCCc
Q 012829 265 GYRCKDDGCSGFLLR----DSDDKGFTCQQCGLV 294 (455)
Q Consensus 265 ~~~C~~~~C~g~~~~----~~~~~~~~C~~C~~~ 294 (455)
-++|....|++++.| +.+++.|+|+.|+..
T Consensus 9 pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 9 PVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp CCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCE
T ss_pred CcccCCCCCCeEECCceEEECCCCEEEcccCCCc
Confidence 468875569888865 334678999999874
No 280
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=71.51 E-value=1.7 Score=30.28 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=17.3
Q ss_pred ccCccccCcCCCcCCCCCCccccCCHHHhHhh
Q 012829 28 SRCDGCFASSNLKKCSACQVVWYCGSNCQKLD 59 (455)
Q Consensus 28 ~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~ 59 (455)
..|-.|.+.....+ .=.++-|||+.|+.-|
T Consensus 10 ~~CP~Cgkp~~W~~--~~~~rPFCSeRCr~iD 39 (68)
T 1lv3_A 10 VNCPTCGKTVVWGE--ISPFRPFCSKRCQLID 39 (68)
T ss_dssp EECTTTCCEEECSS--SSSCCSSSSHHHHHHH
T ss_pred CcCCCCCCcccccc--cCCCCcccCHHHHhhh
Confidence 45667766631000 0023469999999875
No 281
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=70.86 E-value=38 Score=36.93 Aligned_cols=92 Identities=5% Similarity=-0.125 Sum_probs=60.2
Q ss_pred HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHH
Q 012829 315 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 394 (455)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l 394 (455)
..+...|+.++|..++.........-+.|+ ..+++.|+..|...|++++|+++++.+.+ .=+.|+- ..|
T Consensus 135 dglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~---~G~~PDv----vTY 203 (1134)
T 3spa_A 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFKELVYVLFMVKD---AGLTPDL----LSY 203 (1134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCCCCH----HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCcH----HHH
Confidence 345667899999999877654433333443 34678899999999999999999888754 2222333 334
Q ss_pred HHHHHHhhhcCCc-HHHHHHHHHH
Q 012829 395 YTCGKLEWFLGDT-ENAIKSMTEA 417 (455)
Q Consensus 395 ~~La~l~~~~g~~-~eA~~~l~~A 417 (455)
..|-..+...|+. ++|..++++-
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4444445556775 5676766543
No 282
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=70.30 E-value=21 Score=26.47 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhc
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 339 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~ 339 (455)
..+..+...|...-..|++++|+.+|..+++....
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34455666777777889999999999998886544
No 283
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=69.07 E-value=45 Score=31.18 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhcCChH-HHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-------ccHHHHHHHHHHhhhh
Q 012829 307 VNILSKKTLALTSCGNHQ-EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-------EDWKEALAYCQLTIPV 378 (455)
Q Consensus 307 ~~~l~~~a~~~~~~g~~~-~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-------g~~~~A~~~~~~~l~~ 378 (455)
...+.+........|.+. +|+..+..++. +.|.|+..-..+..+....... ..+++++.++..++..
T Consensus 29 y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~-----~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 29 YQSATQAVFQKRQAGELDESVLELTSQILG-----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHT-----TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-----HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 334444444555667665 67887777764 4566666656665555444331 1267777777777653
Q ss_pred HHhhcCCCChHHHHHHHHHHHHhhhcC--CcHHHHHHHHHHHHh
Q 012829 379 YQRVYPQFHPLLGLQYYTCGKLEWFLG--DTENAIKSMTEAVEI 420 (455)
Q Consensus 379 ~~~~~g~~hp~~~~~l~~La~l~~~~g--~~~eA~~~l~~A~~i 420 (455)
. | .++ ...+.-+.++..+| .+++++..+.+++++
T Consensus 104 ~----P-Kny---~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~ 139 (331)
T 3dss_A 104 N----P-KSY---GTWHHRCWLLSRLPEPNWARELELCARFLEA 139 (331)
T ss_dssp C----T-TCH---HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred C----C-CCH---HHHHHHHHHHhccCcccHHHHHHHHHHHHHh
Confidence 2 2 222 22333333444444 356666666666653
No 284
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=68.51 E-value=2.6 Score=27.41 Aligned_cols=30 Identities=27% Similarity=0.647 Sum_probs=21.9
Q ss_pred hCccCCCCCCc-ccccCCCCCCcccCCCCCcCC
Q 012829 265 GYRCKDDGCSG-FLLRDSDDKGFTCQQCGLVRS 296 (455)
Q Consensus 265 ~~~C~~~~C~g-~~~~~~~~~~~~C~~C~~~~~ 296 (455)
.+.|| .|++ .+..+.....+.|..||....
T Consensus 5 ~~~CP--~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCP--ACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CCSCT--TTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred cEeCc--CCCCcceEEcCCCCeEECcccCCccc
Confidence 35686 5877 666666666789999998764
No 285
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=67.60 E-value=15 Score=32.33 Aligned_cols=63 Identities=8% Similarity=-0.073 Sum_probs=51.1
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHH-hcccHHHHHHHHHHhhhhHH
Q 012829 318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM-ELEDWKEALAYCQLTIPVYQ 380 (455)
Q Consensus 318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~-~~g~~~~A~~~~~~~l~~~~ 380 (455)
...|+.+.|...|+.+..+...-++|.||..+.+.-|.+.-|. -+++-++|..+.++++++.+
T Consensus 136 ~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~ 199 (227)
T 2o8p_A 136 FGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILE 199 (227)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3456678889999999998877799999988888777766555 46889999999999988653
No 286
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=67.40 E-value=5.8 Score=36.53 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhc-----CCcHHHHHHHHHHHHhch
Q 012829 365 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL-----GDTENAIKSMTEAVEILR 422 (455)
Q Consensus 365 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~-----g~~~eA~~~l~~A~~i~~ 422 (455)
.+.|..+.++++++-... .-|..+.-||.+|... |+.++|+.+|+||++|--
T Consensus 179 l~~A~a~lerAleLDP~~------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP 235 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS 235 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCCc------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC
Confidence 356666666666643221 2467788888888885 999999999999999654
No 287
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=67.08 E-value=20 Score=26.56 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 425 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~ 425 (455)
.|..+.+.|.-.-..|++++|..+|.+|++.+....
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~al 49 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVL 49 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 467777778888899999999999999999888753
No 288
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=66.10 E-value=31 Score=35.88 Aligned_cols=94 Identities=12% Similarity=-0.045 Sum_probs=61.0
Q ss_pred hcCChHHHH-HHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhh-------cCCC----
Q 012829 319 SCGNHQEVV-STYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV-------YPQF---- 386 (455)
Q Consensus 319 ~~g~~~~a~-~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~-------~g~~---- 386 (455)
..|+.++|. .++++++.. . |.+ .......+......|++++|.+.+++++.....- .|..
T Consensus 355 ~~~~~~~a~r~il~rAi~~----~-P~s---~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQC----I-PNS---AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHH----C-TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hcCcHHHHHHHHHHHHHHh----C-CCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 446677786 888877642 2 222 2334456666777899999999999998864211 1211
Q ss_pred ---ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 387 ---HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 387 ---hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
+......+...+.+....|..++|...+.+|++.
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1123344555567777778889999999998865
No 289
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=64.43 E-value=22 Score=25.75 Aligned_cols=37 Identities=11% Similarity=-0.010 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~ 424 (455)
...|..+..-|.-.-..|++++|..+|.+|++.+...
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3456777777777788999999999999999987765
No 290
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=63.88 E-value=27 Score=25.47 Aligned_cols=53 Identities=13% Similarity=-0.001 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc-CCCChhHHH-HHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKE-LILKLEEA 442 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~-G~~hp~~~~-~~~~l~~~ 442 (455)
.|..+..-|.-.-..|++++|..+|.+|++.+.... +...|..++ +..+..+-
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eY 69 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKY 69 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 356666667777889999999999999999887664 333454444 33344433
No 291
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=63.71 E-value=56 Score=26.21 Aligned_cols=35 Identities=6% Similarity=-0.123 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHH
Q 012829 295 RSKEEIKKIASEVNILSKKTLALTSCGNHQEVVST 329 (455)
Q Consensus 295 ~~~~~~~~~~~e~~~l~~~a~~~~~~g~~~~a~~~ 329 (455)
.+.+++..+..++..-.+.|......|+++.|.-.
T Consensus 4 ~~~ee~~~wl~~A~~dl~~A~~~~~~g~y~~a~F~ 38 (141)
T 3o10_A 4 GNPVEARRWLRQARANFSAARNDLHKNANEWVCFK 38 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHGGGTTTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHhhhhHHhhHHhhCccceEeee
Confidence 35688889999999989999988899998766433
No 292
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=61.74 E-value=19 Score=31.93 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-cccHHHHHHHHHHhhh
Q 012829 324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIP 377 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~ 377 (455)
+.|...|+.+..+...-++|.||..+.+..+.+.-|.. .++-++|..+.+++.+
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677888888887777999999998888777766655 7899999999888766
No 293
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.68 E-value=68 Score=28.96 Aligned_cols=52 Identities=19% Similarity=0.075 Sum_probs=36.6
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHh
Q 012829 316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 375 (455)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 375 (455)
.+...|+.+++++....-++. +|.=...+..|++.+.-.|+|++|...++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455678888888765544332 3444566888999999999999998865543
No 294
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=61.48 E-value=1.6 Score=31.93 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=22.4
Q ss_pred hCccCCCCCCcccccCCCCCCcccCCCCCcC
Q 012829 265 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVR 295 (455)
Q Consensus 265 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 295 (455)
.+.|| .|++....++....|.|..|+...
T Consensus 27 ~y~Cp--~CG~~~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 27 DHACP--NCGEDRVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp CEECS--SSCCEEEEEEETTEEEETTTCCEE
T ss_pred cCcCC--CCCCcceeccCCCeEECCCCCCEe
Confidence 57786 688766666667789999999863
No 295
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=61.37 E-value=30 Score=36.42 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=43.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 012829 311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL 374 (455)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 374 (455)
.-+|.-+.++|+++-|+++.+++... -|.-..+...|+.+|..+|+|+.|+--...
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 34455567889999999988887654 344567889999999999999999876544
No 296
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=61.18 E-value=3.1 Score=28.11 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=24.4
Q ss_pred hhhHhhCccCCCCCCc-ccccCCCCCCcccCCCCCcCC
Q 012829 260 SAILEGYRCKDDGCSG-FLLRDSDDKGFTCQQCGLVRS 296 (455)
Q Consensus 260 ~~~~~~~~C~~~~C~g-~~~~~~~~~~~~C~~C~~~~~ 296 (455)
..++....|| .|++ .+..+.....+.|..||....
T Consensus 6 ~~ll~~~~Cp--~C~~~~lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 6 LDALPRVTCP--NHPDAILVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp CCCCSCCSBT--TBSSSCCEECSSSCCEECTTTCCEEC
T ss_pred hhccccccCc--CCCCCceeEeCCCCeEEeCCCCCEEe
Confidence 3456666897 5765 455565666799999998764
No 297
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=59.60 E-value=43 Score=31.33 Aligned_cols=82 Identities=10% Similarity=-0.108 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhccc-HHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHH
Q 012829 322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED-WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 400 (455)
Q Consensus 322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~-~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l 400 (455)
.+++++..+.+++++ +|.|.. +...-..+....|. +++++++..+++.. .|.++ ..++..+.+
T Consensus 125 ~~~~EL~~~~k~l~~-----dprNy~---AW~~R~~vl~~l~~~~~eel~~~~~~I~~----~p~N~----SAW~~R~~l 188 (331)
T 3dss_A 125 NWARELELCARFLEA-----DERNFH---CWDYRRFVAAQAAVAPAEELAFTDSLITR----NFSNY----SSWHYRSCL 188 (331)
T ss_dssp CHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CSCCH----HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHhCcCHHHHHHHHHHHHHH----CCCCH----HHHHHHHHH
Confidence 478888888888764 344443 33333444556677 68999999988862 33332 334444444
Q ss_pred hhhc--------------CCcHHHHHHHHHHHH
Q 012829 401 EWFL--------------GDTENAIKSMTEAVE 419 (455)
Q Consensus 401 ~~~~--------------g~~~eA~~~l~~A~~ 419 (455)
+..+ +.++++++++.+|+.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~ 221 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 221 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHH
Confidence 4443 457788888888773
No 298
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=58.89 E-value=97 Score=32.10 Aligned_cols=97 Identities=10% Similarity=0.046 Sum_probs=57.4
Q ss_pred hhhcCChHHHHHHHHHHHHHhhccc------CCcc--------ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhh
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLY------HPFS--------VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 382 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l------~~~~--------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~ 382 (455)
....|+++.|.++|++++.....-+ -|.+ .....+.-..+......|+.+.|..++.+++..
T Consensus 388 ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~---- 463 (679)
T 4e6h_A 388 YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL---- 463 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT----
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 3456889999999998876421100 0211 012223334445555678888888888887764
Q ss_pred cCCCChHHHHHHHHHHHHhhhcCC-cHHHHHHHHHHHHh
Q 012829 383 YPQFHPLLGLQYYTCGKLEWFLGD-TENAIKSMTEAVEI 420 (455)
Q Consensus 383 ~g~~hp~~~~~l~~La~l~~~~g~-~~eA~~~l~~A~~i 420 (455)
.|+..+ ..+...|.+.+..|+ .+.|.++++++++.
T Consensus 464 ~~~~~~---~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 464 KKLVTP---DIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp GGGSCT---HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cCCCCh---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 122222 223355666666554 78888888888874
No 299
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=58.74 E-value=28 Score=37.98 Aligned_cols=70 Identities=10% Similarity=-0.162 Sum_probs=53.4
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 418 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~ 418 (455)
......+++.|+..|...|++++|.++...+.....+-.. |.+ ..|+.|-.-+...|+.++|.+++.+-.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~---Pdv-vTYNtLI~Glck~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL---LTL-DMYNAVMLGWARQGAFKELVYVLFMVK 192 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT---CCH-HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC---CCH-hHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3445567888999999999999999998776554433232 333 568888888899999999999988754
No 300
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=58.40 E-value=23 Score=31.58 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-cccHHHHHHHHHHhhhh
Q 012829 324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPV 378 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~ 378 (455)
+.|...|+.+..+...-++|.||..+.+.-+.+.-|.. +++.++|..+.+.+.+-
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677888888887778999999999888777766654 68999999998887663
No 301
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=57.91 E-value=24 Score=31.72 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-cccHHHHHHHHHHhhhh
Q 012829 324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPV 378 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~ 378 (455)
+.|...|+.+..+...-++|.||..+.+.-+.+.-|.. +++.++|..+.+++.+-
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677888888887778999999999888887766655 68999999998887663
No 302
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=57.59 E-value=24 Score=31.16 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHH-hcccHHHHHHHHHHhhh
Q 012829 324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM-ELEDWKEALAYCQLTIP 377 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~-~~g~~~~A~~~~~~~l~ 377 (455)
+.|...|+.+..+...-++|.||..+...-+.+.-|. -+++.++|..+.+++.+
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567788888888777899999999988878776665 46899999999888765
No 303
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=57.03 E-value=22 Score=27.66 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 425 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~ 425 (455)
..|..+...|.-.-..|++++|+.+|.+|++.+....
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777788999999999999999887764
No 304
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=55.67 E-value=28 Score=31.26 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-cccHHHHHHHHHHhhh
Q 012829 324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIP 377 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~ 377 (455)
+.|...|+.+..+. .-++|.||..+.+.-+.+.-|.. +++-++|..+.+++.+
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46778899998888 78999999999888887766665 7899999999888765
No 305
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=55.15 E-value=32 Score=36.17 Aligned_cols=58 Identities=12% Similarity=0.073 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 416 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~ 416 (455)
+++.-+.-++..|+|+-|++..+++.... |.-=..++.||++|..+|+++.|+-.|.-
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------PseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELA--------LDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 34445666778999999999999987744 33335689999999999999999876553
No 306
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=55.09 E-value=28 Score=31.34 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-cccHHHHHHHHHHhhh
Q 012829 324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIP 377 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~ 377 (455)
+.|...|+.+..+...-++|.||..+.+..+.+.-|.. +++-++|..+.+++.+
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 35677888888887777999999999888777766655 6899999998887765
No 307
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=54.96 E-value=1.5 Score=31.00 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=31.0
Q ss_pred hCccCCCCCCcccccCCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHH
Q 012829 265 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTY 330 (455)
Q Consensus 265 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~ 330 (455)
.++|+ |+.....+...++-+|. ||.......+ ..+...++.++|.++-
T Consensus 4 vv~C~---C~~~~~~~~~~kT~~C~-CG~~~~~~k~--------------rif~~~~d~~eA~e~~ 51 (71)
T 1gh9_A 4 IFRCD---CGRALYSREGAKTRKCV-CGRTVNVKDR--------------RIFGRADDFEEASELV 51 (71)
T ss_dssp EEEET---TSCCEEEETTCSEEEET-TTEEEECCSS--------------SCBSCCSSHHHHHHHH
T ss_pred EEECC---CCCEEEEcCCCcEEECC-CCCeeeeceE--------------EEEEecCCHHHHHHHH
Confidence 46784 87777777777888998 9987654322 2233455666776553
No 308
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=54.67 E-value=19 Score=26.83 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=36.5
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHH----------HhchhccCCCChhHHHHHHHHHHHHHHHhhhhc
Q 012829 396 TCGKLEWFLGDTENAIKSMTEAV----------EILRITHGTNSPFMKELILKLEEAQAEASYKLS 451 (455)
Q Consensus 396 ~La~l~~~~g~~~eA~~~l~~A~----------~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~~~ 451 (455)
.+|..+...|.+++|+.++-+|+ .|++.++-++ ...-++.+|..+..++...++
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q~TlP~~--Vf~~Li~~l~~~~~r~~~~~~ 88 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPP--VFQMLLTKLPTISQRIVSAQS 88 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCCH--HHHHHHHHSCSHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCHH--HHHHHHHHHHHHHhhcccccc
Confidence 56888888999999999888876 5566665542 345566666666655544443
No 309
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.19 E-value=1.3e+02 Score=28.75 Aligned_cols=95 Identities=8% Similarity=0.007 Sum_probs=59.7
Q ss_pred hcCChHHHHHHHHHHHHHhhcc---------cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829 319 SCGNHQEVVSTYKMIEKLQKKL---------YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 389 (455)
Q Consensus 319 ~~g~~~~a~~~~~~~l~~~~~~---------l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 389 (455)
...+.+++++.++.+.+..... .....-..+.....++..|...|+.++|..+.+++-......-+.+-..
T Consensus 88 ~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v 167 (393)
T 4b4t_O 88 DSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRI 167 (393)
T ss_dssp HTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHH
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHH
Confidence 3456778877766553321111 1112234556667788999999999999999988877777654433334
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKS 413 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~ 413 (455)
.+..+...+..+...+++.++...
T Consensus 168 ~~~~y~~~~~~~~~~~~~a~~y~~ 191 (393)
T 4b4t_O 168 TNSFYSTNSQYFKFKNDFNSFYYT 191 (393)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 555555666666777777665444
No 310
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=52.10 E-value=62 Score=31.74 Aligned_cols=72 Identities=15% Similarity=0.039 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC--CCCh--HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP--QFHP--LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g--~~hp--~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
.++-....|..+|.+.++...|..+.+.+ +.. ...| ..+| +.+..+|-+|+++...+++.+|.+.|.+|...
T Consensus 174 ~~l~l~n~L~kiYFkl~~~~lckni~k~i-~~~-~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 174 ILLYLVNKLNNIYFRIESPQLCSNIFKNF-QPK-SMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTHHHHHHTH-HHH-CCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHh-ccC-CCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 34456678889999999987776665432 222 1111 1222 46777889999999999999999999999997
No 311
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=50.87 E-value=11 Score=26.62 Aligned_cols=27 Identities=33% Similarity=0.803 Sum_probs=21.4
Q ss_pred CCCccCccccCcCC--CcCCCCCCccccCCH
Q 012829 25 SSISRCDGCFASSN--LKKCSACQVVWYCGS 53 (455)
Q Consensus 25 ~~~~~C~~C~~~~~--~~~C~~C~~~~yCs~ 53 (455)
.....|..|-+.+. .+.| .|+.. ||+.
T Consensus 23 ~~~~RC~~C~kkvgL~~f~C-rCg~~-FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKC-RCGST-FCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEEC-TTSCE-ECTT
T ss_pred ccCccchhhcCcccccceEe-ccCCE-eccc
Confidence 34689999998854 5899 79986 9974
No 312
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=50.78 E-value=63 Score=26.10 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 434 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~ 434 (455)
..|..++..|.++...|+.+.|--+|.+-..++... +.||.++.
T Consensus 40 rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk~ 83 (144)
T 2a9u_A 40 HSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQ 83 (144)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchhh
Confidence 457778888999999999999999999988888533 88887753
No 313
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=49.81 E-value=11 Score=25.78 Aligned_cols=27 Identities=30% Similarity=0.691 Sum_probs=21.2
Q ss_pred CCCccCccccCcCC--CcCCCCCCccccCCH
Q 012829 25 SSISRCDGCFASSN--LKKCSACQVVWYCGS 53 (455)
Q Consensus 25 ~~~~~C~~C~~~~~--~~~C~~C~~~~yCs~ 53 (455)
.....|..|-+.+. .+.| .|+.. ||+.
T Consensus 13 ~~~~rC~~C~kkvgl~~f~C-rCg~~-FC~~ 41 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMC-RCGTT-FCGS 41 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEEC-SSSCE-ECTT
T ss_pred CcCCcChhhCCccCccCEEe-ecCCE-eccc
Confidence 34689999999854 5789 69986 9974
No 314
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=49.56 E-value=91 Score=26.14 Aligned_cols=99 Identities=13% Similarity=0.015 Sum_probs=55.9
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh--hcC-CCChHHHHHH
Q 012829 318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR--VYP-QFHPLLGLQY 394 (455)
Q Consensus 318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~--~~g-~~hp~~~~~l 394 (455)
...|+++.|.++.+... .-.....|+...+..|+++-|.+.++++-+.-.- +|- .........+
T Consensus 16 L~lg~l~~A~e~a~~l~-------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN-------------DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHhC-------------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHH
Confidence 46688888887754431 1234567888888888888888777765332221 110 0111111111
Q ss_pred HHH----------HHHhhhcCCcHHHHHHHHHHH-----HhchhccCCCC
Q 012829 395 YTC----------GKLEWFLGDTENAIKSMTEAV-----EILRITHGTNS 429 (455)
Q Consensus 395 ~~L----------a~l~~~~g~~~eA~~~l~~A~-----~i~~~~~G~~h 429 (455)
-++ ...++.+|++++++++|.+.- ..+-++||++.
T Consensus 83 a~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~ 132 (177)
T 3mkq_B 83 QNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEA 132 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHH
Confidence 111 223556888999999887632 34456677743
No 315
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=47.63 E-value=36 Score=30.68 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhccc--CCccccHHHHHHHHHHHHHh-cccHHHHHHHHHHhhhh
Q 012829 324 QEVVSTYKMIEKLQKKLY--HPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPV 378 (455)
Q Consensus 324 ~~a~~~~~~~l~~~~~~l--~~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~ 378 (455)
+.|...|+.+.++...-+ +|.||..+.+.-|.+.-|.. +++.++|..+.+++.+-
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456778888888776678 99999999888887766664 68999999998887765
No 316
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=47.39 E-value=35 Score=25.35 Aligned_cols=80 Identities=14% Similarity=0.011 Sum_probs=49.7
Q ss_pred HHHHhcccHHHHHHHHHHhhhhHHhhcC--CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829 357 KILMELEDWKEALAYCQLTIPVYQRVYP--QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 434 (455)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~l~~~~~~~g--~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~ 434 (455)
..+.+.|+|=+|=+..+..-. ..+ ......|+.....|..+...|+. |..++.+|+..++..-+. +.-.+
T Consensus 9 ~~lfn~g~~~eaHEvlE~~W~----~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~~--~~gid 80 (94)
T 2cwy_A 9 LGLWRAGRYYEVHEVLEPYWL----KATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPCP--LMGLD 80 (94)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCSS--BTTBC
T ss_pred HHHHhCCChHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCCc--cCCcC
Confidence 345566888777555554332 222 22334577777777777788888 999999999988876332 33344
Q ss_pred HHHHHHHHHH
Q 012829 435 LILKLEEAQA 444 (455)
Q Consensus 435 ~~~~l~~~~~ 444 (455)
+...++.+..
T Consensus 81 v~~L~~~~~~ 90 (94)
T 2cwy_A 81 WRSLLQEARR 90 (94)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 317
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=47.22 E-value=10 Score=26.53 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=24.7
Q ss_pred hhHhhCccCCCCCCcccccCCCCCCcccCCCCCcC
Q 012829 261 AILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVR 295 (455)
Q Consensus 261 ~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 295 (455)
.+++-+.|| .|+|.+..+.+.....|..||...
T Consensus 4 ~LLeiL~CP--~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 4 KLLDILACP--ICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CGGGTCCCT--TTCCCCEECTTSSEEEETTTTEEE
T ss_pred HHHhheeCC--CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 357788997 688888766666678899998753
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.01 E-value=1.1e+02 Score=25.15 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=44.7
Q ss_pred HHHHhcccHHHHHHHHHHhhhhHHhhcCCC----ChHHHHHH-HHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829 357 KILMELEDWKEALAYCQLTIPVYQRVYPQF----HPLLGLQY-YTCGKLEWFLGDTENAIKSMTEAVEILRITH 425 (455)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~----hp~~~~~l-~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~ 425 (455)
..+.+.|+|=+|=+.++.+- +..+.. ....|+.. ...|..++..|+...|..++.+|+..+...-
T Consensus 40 i~lFn~g~yfeaHEvLEe~W----~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~ 109 (161)
T 2ijq_A 40 VRLYNSGEFHESHDCFEDEW----YNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP 109 (161)
T ss_dssp HHHHHTTCHHHHHHHHHHHT----TTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhCCCchHHHHHHHHHH----HhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 34566688877755544432 233322 22346666 6677778889999999999999999887763
No 319
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=45.42 E-value=12 Score=25.59 Aligned_cols=26 Identities=35% Similarity=0.764 Sum_probs=21.0
Q ss_pred CCccCccccCcCC--CcCCCCCCccccCCH
Q 012829 26 SISRCDGCFASSN--LKKCSACQVVWYCGS 53 (455)
Q Consensus 26 ~~~~C~~C~~~~~--~~~C~~C~~~~yCs~ 53 (455)
....|..|-+.+. .+.| .|+.. ||+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~-FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGST-FCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCE-ECSS
T ss_pred cCCcChhhCCcccccCeEe-ecCCE-eccc
Confidence 4689999999854 5789 89986 9974
No 320
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=45.36 E-value=84 Score=29.52 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=48.6
Q ss_pred hhcC-ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-c-cHHHHHHHHHHhhhhHHhhcCCCChHHHHHH
Q 012829 318 TSCG-NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-E-DWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 394 (455)
Q Consensus 318 ~~~g-~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-g-~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l 394 (455)
...| .+++++..+..++. ..|.++.+-.-+. .++... + +++++++++.++++. .|.+.- ..
T Consensus 99 ~~l~~~l~eEL~~~~~~L~-----~nPKny~aW~hR~---wlL~~l~~~~~~~EL~~~~k~L~~----dpkNy~----AW 162 (349)
T 3q7a_A 99 TSLNKSLEDELRLMNEFAV-----QNLKSYQVWHHRL---LLLDRISPQDPVSEIEYIHGSLLP----DPKNYH----TW 162 (349)
T ss_dssp HHTTCCHHHHHHHHHHHHH-----TTCCCHHHHHHHH---HHHHHHCCSCCHHHHHHHHHHTSS----CTTCHH----HH
T ss_pred HHhhhhHHHHHHHHHHHHH-----hCCCcHHHHHHHH---HHHHHhcCCChHHHHHHHHHHHHh----CCCCHH----HH
Confidence 3345 58888888888775 3444554444333 333343 5 788999999988863 333222 22
Q ss_pred HHHHHHhhhcCCcH--------HHHHHHHHHHH
Q 012829 395 YTCGKLEWFLGDTE--------NAIKSMTEAVE 419 (455)
Q Consensus 395 ~~La~l~~~~g~~~--------eA~~~l~~A~~ 419 (455)
+.-+-+....|+++ ++++++.++++
T Consensus 163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 22233333333444 77777777664
No 321
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=45.18 E-value=1e+02 Score=23.56 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHH-------Hhhccc--------CCccccHHHHHHHHHHHHHhcccHHHHHH
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEK-------LQKKLY--------HPFSVNLMQTREKLIKILMELEDWKEALA 370 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~-------~~~~~l--------~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 370 (455)
.+++..-+|......|+|++|.+..+.+.+ .+++++ .+.+..+.++.+.|+.+.. ..+
T Consensus 21 ~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~~l~~AH~~QT~Liq~Ea~g~~~~~slLlvHAQDhLMta~~-------~~~ 93 (109)
T 3k1s_A 21 NARSFAMEALQFAKQGKMAEADEAMVKAKEAINEAHHFQTELIQSEARGEKTEISVLLIHAQDHLMNAIT-------VKE 93 (109)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCeeehhHHHHHHHHHH-------HHH
Confidence 566666677777788999999887765533 222221 1334556677777776554 344
Q ss_pred HHHHhhhhHHhh
Q 012829 371 YCQLTIPVYQRV 382 (455)
Q Consensus 371 ~~~~~l~~~~~~ 382 (455)
+.+..+++|+++
T Consensus 94 la~e~I~lyk~~ 105 (109)
T 3k1s_A 94 LAAEFIDLYKKL 105 (109)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555556666654
No 322
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=44.99 E-value=71 Score=23.58 Aligned_cols=50 Identities=22% Similarity=0.056 Sum_probs=36.1
Q ss_pred CChH-HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCC-CChhHHHH
Q 012829 386 FHPL-LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT-NSPFMKEL 435 (455)
Q Consensus 386 ~hp~-~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~-~hp~~~~~ 435 (455)
++|. .+..+-..|.-+...|+|++|++..++|...+...+-- ..+-+.+.
T Consensus 9 ~spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~S 60 (97)
T 2crb_A 9 EGPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLS 60 (97)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred cchhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 4553 57777788999999999999999888888766665543 34444443
No 323
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.97 E-value=84 Score=30.58 Aligned_cols=69 Identities=14% Similarity=0.007 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH-HHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
.++....|+.+|...|+|.+|......+. ...+|..... ..-.+.....++...+++..|..++.+|..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~---~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQ---VETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHH---HHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566789999999999999999877754 3456654443 344555678889999999999999999864
No 324
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.79 E-value=1.1e+02 Score=23.71 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 364 DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 364 ~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
.+++|..+-.++|.+=|. .++..|+.+|+- ++..|.+++.|-..
T Consensus 18 ~h~~AF~~Is~AL~~DE~----g~k~~Al~lYk~------------GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL----GQKEEAKNYYKQ------------GIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH----TCHHHHHHHHHH------------HHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHhhhhhc----CCHHHHHHHHHH------------HHHHHHHhcccccc
Confidence 456677777777666663 556565555543 34556666666654
No 325
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=43.25 E-value=16 Score=26.63 Aligned_cols=26 Identities=23% Similarity=0.570 Sum_probs=20.9
Q ss_pred CCccCccccCcCC---CcCCCCCCccccCCH
Q 012829 26 SISRCDGCFASSN---LKKCSACQVVWYCGS 53 (455)
Q Consensus 26 ~~~~C~~C~~~~~---~~~C~~C~~~~yCs~ 53 (455)
....|+.|.+... .+.|. |+.. ||+.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~-FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNN-FCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCE-ECTT
T ss_pred cCccchhhCCeecccCCeEcC-CCCE-eccc
Confidence 4689999999843 68895 9986 9984
No 326
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=42.44 E-value=44 Score=27.09 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 433 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~ 433 (455)
+|..+++.|.+|...|+.+.|--+|.++..++.... |.||.+.
T Consensus 39 ta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~I-pkHpdy~ 81 (146)
T 2xze_A 39 SGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKL-PKHRDYK 81 (146)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTG-GGSTTTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc-ccCccch
Confidence 567788889999999999999999999988885443 4466553
No 327
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=42.11 E-value=53 Score=23.70 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhc
Q 012829 303 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 339 (455)
Q Consensus 303 ~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~ 339 (455)
....+..+..+|...-..|++++|+.+|..+++....
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4455666777788888889999999999988876443
No 328
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=41.83 E-value=1.1e+02 Score=23.73 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhccc
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 341 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l 341 (455)
..+..+...|...-..|++++|+.+|..+++.....+
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666677999999999999888755443
No 329
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=39.51 E-value=12 Score=25.96 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=23.5
Q ss_pred hhHhhCccCCCCCCcccccCCCCCCcccCCCCCc
Q 012829 261 AILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV 294 (455)
Q Consensus 261 ~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~ 294 (455)
.+++-+.|| .|+|.+..+.......|..|+..
T Consensus 6 ~LLeiL~CP--~ck~~L~~~~~~g~LvC~~c~~~ 37 (67)
T 2jny_A 6 QLLEVLACP--KDKGPLRYLESEQLLVNERLNLA 37 (67)
T ss_dssp GGTCCCBCT--TTCCBCEEETTTTEEEETTTTEE
T ss_pred HHHHHhCCC--CCCCcCeEeCCCCEEEcCCCCcc
Confidence 456778897 68888776655666789988864
No 330
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.19 E-value=59 Score=31.46 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
+.++...+|..|.+.|++++|++.+.++.. ...+..|- .-.++.+..++...+++..+..++.+|..+...
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~---~~~~~~~k--id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLS---KAISTGAK--IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHH---HHTCCCSH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCChHHH--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence 334566789999999999999999888554 44555553 455667777888999999999999999876654
No 331
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=38.81 E-value=16 Score=24.99 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=27.9
Q ss_pred CceeecCCCCCCccCccccCcC-----CCcCCCCCCccccCCHHHhHh
Q 012829 16 PYVCVPNNSSSISRCDGCFASS-----NLKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 16 P~~~~~~~~~~~~~C~~C~~~~-----~~~~C~~C~~~~yCs~~C~~~ 58 (455)
|-.+.+..-...+.|++|...+ ....|..|++. |-+.|...
T Consensus 9 ~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~--~Hk~C~~~ 54 (65)
T 3uej_A 9 SHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMN--VHHKCREK 54 (65)
T ss_dssp ECCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCE--ECHHHHTT
T ss_pred CceEEeEeCCCCCcccccChhhhccCceeeECCCCCCe--EchhHhhh
Confidence 3333333334679999998774 25689999974 88888753
No 332
>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.40 E-value=13 Score=26.78 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.4
Q ss_pred EEEEecccCCCCeeEEee
Q 012829 204 VVRAVQHVPKGAEVLISY 221 (455)
Q Consensus 204 ~v~a~r~I~~GeEi~isY 221 (455)
.|+|.++|++||.|+-.=
T Consensus 8 slvA~rdI~~Gevit~~d 25 (79)
T 1wvo_A 8 SVVAKVKIPEGTILTMDM 25 (79)
T ss_dssp EEEESSCBCTTCBCCGGG
T ss_pred EEEEeCccCCCCCcCHHH
Confidence 678999999999998654
No 333
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=38.19 E-value=22 Score=25.47 Aligned_cols=30 Identities=37% Similarity=0.882 Sum_probs=22.0
Q ss_pred hCccCCCCCCcccccCCCCCCcccC-----CCCCc
Q 012829 265 GYRCKDDGCSGFLLRDSDDKGFTCQ-----QCGLV 294 (455)
Q Consensus 265 ~~~C~~~~C~g~~~~~~~~~~~~C~-----~C~~~ 294 (455)
...||.++|+..+..+++.....|. .|+..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~ 59 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFA 59 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCe
Confidence 5689998998877665555667787 77763
No 334
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.02 E-value=1.8e+02 Score=27.60 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=52.9
Q ss_pred HHHHHhcccHHHHHHHHHHhhhhHHhhcCC--------CCh-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccC
Q 012829 356 IKILMELEDWKEALAYCQLTIPVYQRVYPQ--------FHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 426 (455)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~--------~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G 426 (455)
..+.....+.++|+++...+..-....++. .+. ........++..+...|+.++|.+++.++...+...-|
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344555678899999988765544443331 111 23455667788899999999999999999999888766
Q ss_pred CCC
Q 012829 427 TNS 429 (455)
Q Consensus 427 ~~h 429 (455)
.+-
T Consensus 163 ~~~ 165 (393)
T 4b4t_O 163 IPL 165 (393)
T ss_dssp SSS
T ss_pred ccH
Confidence 653
No 335
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.94 E-value=1.4e+02 Score=23.07 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 012829 297 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEK 335 (455)
Q Consensus 297 ~~~~~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~ 335 (455)
...++....++...+..|...-..|+-++|+.+|++.+.
T Consensus 12 l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 12 IKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 345667777788888888888888999999999987655
No 336
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=37.75 E-value=45 Score=28.04 Aligned_cols=51 Identities=10% Similarity=0.024 Sum_probs=39.9
Q ss_pred HHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 357 KILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
...+..|+++.|++.++.+ +. -..+.+||......|+++-|+..|+++.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l----------~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL----------ND---SITWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH----------CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HHHHhcCCHHHHHHHHHHh----------CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 3456789999999987654 22 345889999999999999999999886543
No 337
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=37.70 E-value=17 Score=25.61 Aligned_cols=26 Identities=27% Similarity=0.640 Sum_probs=20.6
Q ss_pred CCccCccccCcC--CCcCCCCCCccccCCH
Q 012829 26 SISRCDGCFASS--NLKKCSACQVVWYCGS 53 (455)
Q Consensus 26 ~~~~C~~C~~~~--~~~~C~~C~~~~yCs~ 53 (455)
....|..|-+.+ ..+.|. |+.. ||+.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~-FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNL-FCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCE-ECSS
T ss_pred cCCcChhhCCcccccCeecC-CCCE-echh
Confidence 357899999984 368899 9975 9974
No 338
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=36.98 E-value=72 Score=22.75 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=26.1
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHhchhccC
Q 012829 394 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 426 (455)
Q Consensus 394 l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G 426 (455)
-.++|.=+...|.|+.|..+|+-|++-+.+...
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~ 47 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLY 47 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 345666678889999999999999977766643
No 339
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=36.81 E-value=18 Score=23.32 Aligned_cols=30 Identities=17% Similarity=0.461 Sum_probs=19.0
Q ss_pred CccCccccCcCCCcCCCCCCccccCCHHHhHh
Q 012829 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~ 58 (455)
..+|.+|.+..+...=. +.-.|||..|++.
T Consensus 18 ~~~C~~CG~~i~~~~~~--r~krFCS~sCR~~ 47 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFR--GSKRFCSMTCAKR 47 (49)
T ss_dssp EEECTTTCCEEEGGGCT--TTSSSCSHHHHHH
T ss_pred CCcChhccCccccccCC--CCCccCCHHHHhh
Confidence 35799999884321100 1236999999875
No 340
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.26 E-value=14 Score=33.29 Aligned_cols=25 Identities=32% Similarity=0.861 Sum_probs=20.6
Q ss_pred CccCccccCcCC------------CcCCCCCCccccC
Q 012829 27 ISRCDGCFASSN------------LKKCSACQVVWYC 51 (455)
Q Consensus 27 ~~~C~~C~~~~~------------~~~C~~C~~~~yC 51 (455)
...|.+|+-..| .+.||+|+...|=
T Consensus 198 ~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 198 KQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYA 234 (256)
T ss_dssp TTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEEC
T ss_pred CCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEe
Confidence 579999999854 5899999987774
No 341
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=35.93 E-value=12 Score=26.12 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=22.2
Q ss_pred hHhhCccCCCCCCcccccCCCCCCcccCCCCCc
Q 012829 262 ILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV 294 (455)
Q Consensus 262 ~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~ 294 (455)
+++-+.|| .|+|.+..+.......|..||..
T Consensus 5 LL~iL~CP--~ck~~L~~~~~~~~LiC~~cg~~ 35 (68)
T 2jr6_A 5 FLDILVCP--VTKGRLEYHQDKQELWSRQAKLA 35 (68)
T ss_dssp SSCCCBCS--SSCCBCEEETTTTEEEETTTTEE
T ss_pred HhhheECC--CCCCcCeEeCCCCEEEcCCCCcE
Confidence 45667887 58887766555566788888864
No 342
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=35.50 E-value=17 Score=26.15 Aligned_cols=22 Identities=41% Similarity=0.913 Sum_probs=17.2
Q ss_pred CCccCccccCcC---CCcCCCCCCc
Q 012829 26 SISRCDGCFASS---NLKKCSACQV 47 (455)
Q Consensus 26 ~~~~C~~C~~~~---~~~~C~~C~~ 47 (455)
....|+.||+.. +..-||.|+.
T Consensus 14 ~iLrC~aCf~~t~~~~k~FCp~CGn 38 (79)
T 2con_A 14 YILRCHGCFKTTSDMNRVFCGHCGN 38 (79)
T ss_dssp EEEECSSSCCEESCSSCCSCSSSCC
T ss_pred eeeEecccceECCCcccccccccCc
Confidence 457899999983 4678999974
No 343
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=35.50 E-value=66 Score=23.11 Aligned_cols=36 Identities=8% Similarity=0.125 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhc
Q 012829 304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 339 (455)
Q Consensus 304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~ 339 (455)
...+..+..+|...-..|++++|+.+|..+++....
T Consensus 8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 445566777788888889999999999988876443
No 344
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=35.42 E-value=12 Score=26.33 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=22.9
Q ss_pred hHhhCccCCCCCCcccccCCCCCCcccCCCCCcC
Q 012829 262 ILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVR 295 (455)
Q Consensus 262 ~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 295 (455)
+++-+.|| .|+|.+..+.......|..||...
T Consensus 5 LL~iL~CP--~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 5 LLDILVCP--VCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCCCBCT--TTCCBEEEETTTTEEEETTTTEEE
T ss_pred HhhheECC--CCCCcCEEeCCCCEEEcCCCCcee
Confidence 45667887 688887666555667898888643
No 345
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=34.81 E-value=11 Score=26.25 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=22.8
Q ss_pred hHhhCccCCCCCCcccccCCCCCCcccCCCCCcC
Q 012829 262 ILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVR 295 (455)
Q Consensus 262 ~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 295 (455)
+++-+.|| .|+|.+..+.......|..||...
T Consensus 5 LL~iL~CP--~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 5 FLEILVCP--LCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CEEECBCT--TTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhhheECC--CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45677887 588887666555667898888643
No 346
>3nw0_B Melanoma-associated antigen G1; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=34.20 E-value=76 Score=27.61 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH-HHH
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL-EEA 442 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l-~~~ 442 (455)
..-|.+|+.+.-||.+.++-+...|.. +-+.+..+...-|.+|+...+....+ +++
T Consensus 94 ~~~pk~GLL~~IL~~Ifm~Gn~~~Ee~--lw~~L~~lgv~~g~~h~i~Ge~rklit~~l 150 (217)
T 3nw0_B 94 QGTPTTGLLMIVLGLIFMKGNTLKETE--AWDFLRRLGVYPTKKHLIFGDPKKLITEDF 150 (217)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTCBCHHH--HHHHHHHC-CCC----------HHHHHHHH
T ss_pred ccccchhHHHHHHHHHHhcCCCCCHHH--HHHHHHhcCCCCCCcCCcCCCHHHHHHHHH
Confidence 356999999999999999888876654 66778888887899999988877776 444
No 347
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.67 E-value=16 Score=23.83 Aligned_cols=27 Identities=26% Similarity=0.602 Sum_probs=18.8
Q ss_pred hHhhCccCCCCCCcccccCCCCCCcccCCCCCc
Q 012829 262 ILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV 294 (455)
Q Consensus 262 ~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~ 294 (455)
......|+ .|++.+ ....|.|.+||..
T Consensus 11 ~~~k~iCp--kC~a~~----~~gaw~CrKCG~~ 37 (51)
T 3j21_g 11 IFKKYVCL--RCGATN----PWGAKKCRKCGYK 37 (51)
T ss_dssp SSSEEECT--TTCCEE----CTTCSSCSSSSSC
T ss_pred HhCCccCC--CCCCcC----CCCceecCCCCCc
Confidence 44566786 576652 2456999999986
No 348
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=32.64 E-value=1.7e+02 Score=22.66 Aligned_cols=68 Identities=7% Similarity=0.114 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHH-------Hhhccc--------CCccccHHHHHHHHHHHHHhcccHHHHHH
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEK-------LQKKLY--------HPFSVNLMQTREKLIKILMELEDWKEALA 370 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~-------~~~~~l--------~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 370 (455)
.+++..-+|......|+|++|.+..+.+.+ .+..++ -+.+..++++.+.|+.+.. ..+
T Consensus 36 ~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~AH~~QT~Liq~EA~G~~~~~sLLlvHAQDhLMta~~-------~~d 108 (120)
T 3l8r_A 36 NARSIVHEAFDAMREKNYILAEQKLQEANDELLKAHQAQTDLLQEYASGTEIKIEIIMVHAQDHLMTTMT-------LRE 108 (120)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceeeehHHHHHHHHHH-------HHH
Confidence 566667777777888999999887765533 222221 1234555577777776554 334
Q ss_pred HHHHhhhhHH
Q 012829 371 YCQLTIPVYQ 380 (455)
Q Consensus 371 ~~~~~l~~~~ 380 (455)
+.+..+++|+
T Consensus 109 La~e~I~lyk 118 (120)
T 3l8r_A 109 VAIEMLELYK 118 (120)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4445555554
No 349
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.57 E-value=20 Score=25.88 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=32.2
Q ss_pred EEEeCCceeecCCCCCCccCccccCcCC-----CcCCCCCCccccCCHHHhHh
Q 012829 11 IISQEPYVCVPNNSSSISRCDGCFASSN-----LKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 11 il~e~P~~~~~~~~~~~~~C~~C~~~~~-----~~~C~~C~~~~yCs~~C~~~ 58 (455)
|..-.+-.+.+..-...+.|++|...+. ...|..|++. |-+.|...
T Consensus 12 ~~~~~~H~F~~~~~~~pt~C~~C~~~lwGl~kqg~~C~~C~~~--~Hk~C~~~ 62 (83)
T 2yuu_A 12 IHYIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAA--IHKKCIDK 62 (83)
T ss_dssp EECGGGCCEEEECCSSCCCCSSSCCCCCSSSCCEEEETTTCCE--ECTTGGGT
T ss_pred CcccCCCceEeEeCCCCcChhhcChhhccccccccccCCcCCe--eChhhhhh
Confidence 4444555555544557899999988742 5689999975 88888764
No 350
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=32.16 E-value=2e+02 Score=23.29 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
.+..|-..|..+...|++++|...++.+++
T Consensus 100 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 100 SSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466677889999999999999999999988
No 351
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.84 E-value=15 Score=23.81 Aligned_cols=26 Identities=19% Similarity=0.621 Sum_probs=15.7
Q ss_pred ccCCCCCCcccccCCCCCCcccCCCCCc
Q 012829 267 RCKDDGCSGFLLRDSDDKGFTCQQCGLV 294 (455)
Q Consensus 267 ~C~~~~C~g~~~~~~~~~~~~C~~C~~~ 294 (455)
-|| .|++.+.-.+....+.|.+||.+
T Consensus 21 ~CP--~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 21 FCP--RCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp ECS--SSCSSCEEEECSSEEECSSSCCE
T ss_pred cCC--CCCCceEEecCCCeEECCCCCCE
Confidence 476 58652222223456899999975
No 352
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.28 E-value=27 Score=24.11 Aligned_cols=26 Identities=35% Similarity=0.723 Sum_probs=21.0
Q ss_pred CCccCccccCcCCC-----cCCCCCCccccCCH
Q 012829 26 SISRCDGCFASSNL-----KKCSACQVVWYCGS 53 (455)
Q Consensus 26 ~~~~C~~C~~~~~~-----~~C~~C~~~~yCs~ 53 (455)
....|..|-+...+ ..| .|+.+ ||+.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~-FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYV-FCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCC-CCTT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCE-ehhc
Confidence 36799999999653 699 89986 9974
No 353
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.24 E-value=27 Score=24.07 Aligned_cols=32 Identities=16% Similarity=0.508 Sum_probs=24.1
Q ss_pred CccCccccCcCC-----CcCCCCCCccccCCHHHhHh
Q 012829 27 ISRCDGCFASSN-----LKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 27 ~~~C~~C~~~~~-----~~~C~~C~~~~yCs~~C~~~ 58 (455)
...|++|..... ...=..++..+|||..|.+.
T Consensus 4 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~ 40 (66)
T 3j21_V 4 WNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERY 40 (66)
T ss_dssp CCBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHH
T ss_pred eeEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHH
Confidence 467999998842 23335788889999999875
No 354
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=31.01 E-value=25 Score=24.62 Aligned_cols=26 Identities=15% Similarity=0.501 Sum_probs=19.5
Q ss_pred CCCccCccccCc-----CCCcCCCCCCc-ccc
Q 012829 25 SSISRCDGCFAS-----SNLKKCSACQV-VWY 50 (455)
Q Consensus 25 ~~~~~C~~C~~~-----~~~~~C~~C~~-~~y 50 (455)
...-.|..|... ...++|+.|+. ++|
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTDAVRCKDCGHRILL 57 (70)
T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred eEEEECCCCCCcceeCCCCCccCCCCCceEeE
Confidence 356789999988 23789999986 544
No 355
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=30.72 E-value=2.3e+02 Score=27.55 Aligned_cols=61 Identities=15% Similarity=-0.055 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhh
Q 012829 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 448 (455)
Q Consensus 387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~ 448 (455)
-|.+.......|..+...|..++|.+|.+.....++.. |...++...+...|.++..+++.
T Consensus 352 ~p~l~~yKl~~A~~Lae~G~~~~A~~Ycdai~~~lk~~-~k~s~~~~~l~~~l~~L~~RL~~ 412 (441)
T 3mzk_B 352 FSSILPQKIYHASLLQEQGLNSLGTKYTDYLSSSVRKL-PKKDILTINLTRELSEVASRLSE 412 (441)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-CTTSHHHHHHHHHHHHHHHHTC-
T ss_pred ChhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhC-CCCCCcCHHHHHHHHHHHHHHhc
Confidence 46565566667888999999999999888777777654 56667777888999998888764
No 356
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=30.17 E-value=1.5e+02 Score=21.30 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhc
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 339 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~ 339 (455)
.+..+...|...-..|++++|+.+|..+++....
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3445566677777889999999999998886544
No 357
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=30.00 E-value=1.7e+02 Score=21.62 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC-CCChHH
Q 012829 347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLL 390 (455)
Q Consensus 347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~hp~~ 390 (455)
..+......+..+...|+|++|++..+++...+...+- ..++.+
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa 57 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQA 57 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 34566677888999999999999998887765544443 344443
No 358
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=29.69 E-value=50 Score=23.27 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=21.6
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829 395 YTCGKLEWFLGDTENAIKSMTEAVEI 420 (455)
Q Consensus 395 ~~La~l~~~~g~~~eA~~~l~~A~~i 420 (455)
..+|..+...|++++|..++-+|+.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~V 46 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35678888899999999999999864
No 359
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=29.38 E-value=1.8e+02 Score=21.91 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHH-------Hhhccc--------CCccccHHHHHHHHHHHHHhcccHHHHHH
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEK-------LQKKLY--------HPFSVNLMQTREKLIKILMELEDWKEALA 370 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~-------~~~~~l--------~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 370 (455)
.+++..-+|......|+|++|.+..+.+.+ .+.+++ .+.+..++++.+.|+.+.. ..+
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Qt~liq~Ea~g~~~~~slLlvHAQDhLMta~~-------~~~ 91 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLAREASGEELPYSVTMMHGQLHLMTTIL-------LKD 91 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeehhHHHHHHHHHH-------HHH
Confidence 456666777777888999999887765443 222211 2234555677777776544 334
Q ss_pred HHHHhhhhHHh
Q 012829 371 YCQLTIPVYQR 381 (455)
Q Consensus 371 ~~~~~l~~~~~ 381 (455)
+.+..+++|++
T Consensus 92 la~e~I~lyk~ 102 (105)
T 2e2a_A 92 VIHHLIELYKR 102 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555566655
No 360
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=29.23 E-value=37 Score=23.74 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=24.8
Q ss_pred CCCccCccccCcC--CCcCCCCCCccccCCHHHhHh
Q 012829 25 SSISRCDGCFASS--NLKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 25 ~~~~~C~~C~~~~--~~~~C~~C~~~~yCs~~C~~~ 58 (455)
...+.|.+|...+ ....|..|++. |-+.|...
T Consensus 33 ~~pt~C~~C~~~l~~qG~kC~~C~~~--cHkkC~~~ 66 (72)
T 2fnf_X 33 GGPGWCDLCGREVLRQALRCANCKFT--CHSECRSL 66 (72)
T ss_dssp SSCCBCTTTSSBCSSCCEECTTSSCE--ECTGGGGG
T ss_pred CCCcchhhhhHHHHhCcCccCCCCCe--echhhhcc
Confidence 4578999998774 46789999974 88888753
No 361
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=28.71 E-value=33 Score=21.78 Aligned_cols=19 Identities=26% Similarity=0.774 Sum_probs=14.2
Q ss_pred cCccccCc--------CCCcCCCCCCc
Q 012829 29 RCDGCFAS--------SNLKKCSACQV 47 (455)
Q Consensus 29 ~C~~C~~~--------~~~~~C~~C~~ 47 (455)
.|.-|.+. ++.++||-|++
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCc
Confidence 57778776 24789999986
No 362
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=28.70 E-value=1.2e+02 Score=31.49 Aligned_cols=53 Identities=8% Similarity=-0.172 Sum_probs=28.0
Q ss_pred HHHHhcccHHHHHHHHHHhh------hhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHH
Q 012829 357 KILMELEDWKEALAYCQLTI------PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENA 410 (455)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~l------~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA 410 (455)
.+|...|++++|++++.++- .+. +.+++.+..+.......+.-+...|+.+.|
T Consensus 744 ~~~~~~g~~~~a~~~~~~~~~~~~A~~lA-~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 744 NAYWIAGDIQGAKDLLIKSQRFSEAAFLG-STYGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHcCChHHHHHHH-HHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 35566777777777766542 222 345555522333344444555566665443
No 363
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.52 E-value=3.5e+02 Score=24.90 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHhcccHHHHHHHHH-------------HhhhhHH-----------------------------hhcC--CCChHH
Q 012829 355 LIKILMELEDWKEALAYCQ-------------LTIPVYQ-----------------------------RVYP--QFHPLL 390 (455)
Q Consensus 355 L~~~~~~~g~~~~A~~~~~-------------~~l~~~~-----------------------------~~~g--~~hp~~ 390 (455)
++.-+...|+|+.|+.++. ..+++|. ..+| +.....
T Consensus 22 laadhvaAGsFe~A~~lLnrQ~Givnf~PLk~~F~~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l~~ 101 (320)
T 3mkr_B 22 LPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLND 101 (320)
T ss_dssp CHHHHHHTTCHHHHHHHHHHHSCBCCCGGGHHHHHHHHTTSCEEECSSTTSCCEEECCBTTTTTCCSSSCCBCCCCCHHH
T ss_pred cHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhccCCCCCCcchhhhcCCccccccccCCCCcccCHHH
Q ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829 391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 446 (455)
Q Consensus 391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~ 446 (455)
.....+.|--+...|++++|+..++.++..+-..--.+.....++.+.++.++.-+
T Consensus 102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYi 157 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYI 157 (320)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHH
No 364
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=28.12 E-value=19 Score=20.66 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=16.5
Q ss_pred CCCcCCCCCCccccCCHHHhH
Q 012829 37 SNLKKCSACQVVWYCGSNCQK 57 (455)
Q Consensus 37 ~~~~~C~~C~~~~yCs~~C~~ 57 (455)
.+.+||+-|.--.-|..-|+.
T Consensus 11 l~~VPCsiC~~N~~C~slCq~ 31 (32)
T 1brv_A 11 LPYVPCSTCEGNLACLSLCHI 31 (32)
T ss_pred cccccccccCCChhHHHHhhc
Confidence 568999999876678777763
No 365
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=27.95 E-value=45 Score=23.81 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC-ChHH
Q 012829 354 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-HPLL 390 (455)
Q Consensus 354 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~-hp~~ 390 (455)
.+|+-|.-.|+|+.|+.|++.++.-..+++..- .|..
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~ 54 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHL 54 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 467778888999999999999999777766533 4443
No 366
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=27.42 E-value=1.5e+02 Score=29.11 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCc
Q 012829 366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDT 407 (455)
Q Consensus 366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~ 407 (455)
++|++.++++++.++++-..+.|.....+.++++.|...|++
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDy 490 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHH
Confidence 568888888888888899999999988899998887665543
No 367
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=27.07 E-value=65 Score=22.71 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=18.7
Q ss_pred CCcccCCCCCcC-CHHHHHHHHHHHHHHHHH
Q 012829 284 KGFTCQQCGLVR-SKEEIKKIASEVNILSKK 313 (455)
Q Consensus 284 ~~~~C~~C~~~~-~~~~~~~~~~e~~~l~~~ 313 (455)
..|.|+.||... +.++.+++.+.+..+.+.
T Consensus 35 p~~~C~~CGE~~~~~e~~~~~~~~~~~f~~~ 65 (78)
T 3ga8_A 35 HGLYCVHCEESIMNKEESDAFMAQVKAFRAS 65 (78)
T ss_dssp EEEEETTTCCEECCHHHHHHHHHHHHHHHHH
T ss_pred eeEECCCCCCEEECHHHHHHHHHHHHHHHHH
Confidence 568999999874 455555544444444433
No 368
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=26.76 E-value=26 Score=37.05 Aligned_cols=30 Identities=20% Similarity=0.553 Sum_probs=19.6
Q ss_pred CccCCCCCCccccc----CCCCCCcccCCCCCcC
Q 012829 266 YRCKDDGCSGFLLR----DSDDKGFTCQQCGLVR 295 (455)
Q Consensus 266 ~~C~~~~C~g~~~~----~~~~~~~~C~~C~~~~ 295 (455)
++|..+.|++++.| +.+++.|+|+.|+..-
T Consensus 54 vRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N 87 (768)
T 1m2o_A 54 VVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRN 87 (768)
T ss_dssp CBCCSTTTCCBCCTTSCEETTTTEECCTTTCCCC
T ss_pred CccCCCCCCeEECCceEEeCCCCEEEcccCCCCC
Confidence 56654347776654 3456789999998653
No 369
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=26.71 E-value=1.2e+02 Score=22.21 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHh
Q 012829 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 337 (455)
Q Consensus 305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~ 337 (455)
..++.+..+|..++..+++.+|..+++++..+.
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 567788888999999999999999999987653
No 370
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=26.38 E-value=33 Score=21.70 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=24.4
Q ss_pred CCCccCccccCcC-----CCcCCCCCCccccCCHHHhHh
Q 012829 25 SSISRCDGCFASS-----NLKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 25 ~~~~~C~~C~~~~-----~~~~C~~C~~~~yCs~~C~~~ 58 (455)
...+.|++|...+ ....|..|++. |-+.|...
T Consensus 9 ~~pt~C~~C~~~l~g~~~qg~~C~~C~~~--~H~~C~~~ 45 (50)
T 1ptq_A 9 MSPTFCDHCGSLLWGLVKQGLKCEDCGMN--VHHKCREK 45 (50)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCE--ECHHHHTT
T ss_pred CCCCCcCCCCceeeccCCccCEeCCCCCe--ECHHHhhh
Confidence 3578999998874 25789999975 88888753
No 371
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=26.22 E-value=1.2e+02 Score=29.41 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=27.7
Q ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829 345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 378 (455)
Q Consensus 345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 378 (455)
++...-+..-++++|+..|+|++|+++++.++..
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 4444556667899999999999999999998864
No 372
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=25.51 E-value=40 Score=23.88 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=28.6
Q ss_pred CCCccCcc--ccCc-CCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhh
Q 012829 25 SSISRCDG--CFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSR 72 (455)
Q Consensus 25 ~~~~~C~~--C~~~-~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~ 72 (455)
....+|.. |-+. .-++.|..|+.. ||++ -.....+.|.....
T Consensus 12 ~~g~~Cs~~~C~~~dflpf~C~~C~~~-FC~~-----HR~~e~H~C~~~~~ 56 (75)
T 1wys_A 12 DIGQHCQVQHCRQRDFLPFVCDGCSGI-FCLE-----HRSKDSHGCSEVNV 56 (75)
T ss_dssp CCCCCCSCTTTCCCSCCCEECTTTCCE-ECST-----TCSSGGGTCCCCSS
T ss_pred ccCCCcCcccCCCccceeeECcccCcC-cCcc-----cCCccccCCCCCcc
Confidence 35789998 9887 347899999986 9974 01123467875543
No 373
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=25.26 E-value=28 Score=36.84 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=18.8
Q ss_pred CccCCCCCCccccc----CCCCCCcccCCCCCc
Q 012829 266 YRCKDDGCSGFLLR----DSDDKGFTCQQCGLV 294 (455)
Q Consensus 266 ~~C~~~~C~g~~~~----~~~~~~~~C~~C~~~ 294 (455)
++|..+.|++++.| +.+++.|+|+.|+..
T Consensus 63 vRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~ 95 (769)
T 2nut_A 63 VLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQR 95 (769)
T ss_dssp CBCSSTTCCCBCCTTSEEETTTTEEECSSSCCE
T ss_pred CcCCCCCCCeEECCceEEeCCCCEEEccCCCCC
Confidence 45654347666654 345678999999864
No 374
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=24.79 E-value=58 Score=23.60 Aligned_cols=42 Identities=14% Similarity=0.423 Sum_probs=29.0
Q ss_pred CCceeecCCCCCCccCccccCcC-----C--CcCCCCCCccccCCHHHhHh
Q 012829 15 EPYVCVPNNSSSISRCDGCFASS-----N--LKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 15 ~P~~~~~~~~~~~~~C~~C~~~~-----~--~~~C~~C~~~~yCs~~C~~~ 58 (455)
.+--+.+..-...+.|.+|...+ . ...|..|++. |-+.|...
T Consensus 23 ~~H~F~~~~~~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~--~HkrC~~k 71 (84)
T 2row_A 23 KGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIK--CHKDHMDK 71 (84)
T ss_dssp TTEEEEEECCSSCEECSSSSSEECCSSSCCCEEEESSSCCE--EEHHHHHH
T ss_pred CCcceEeEcCCCCcchhhcCHhhhccccCCCCCEecCCCCc--cchhHhCC
Confidence 33333343445689999998773 2 5579999975 88999873
No 375
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=24.64 E-value=77 Score=27.15 Aligned_cols=34 Identities=21% Similarity=0.101 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829 389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422 (455)
Q Consensus 389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~ 422 (455)
+....+|-+|+++...+++.+|.+.|.+|.....
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~ 45 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCH 45 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCC
Confidence 3556778899999999999999999999998643
No 376
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=24.60 E-value=19 Score=24.42 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=24.4
Q ss_pred CCccCccccCcCC----CcCCCCCCccccCCHHHhHh
Q 012829 26 SISRCDGCFASSN----LKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 26 ~~~~C~~C~~~~~----~~~C~~C~~~~yCs~~C~~~ 58 (455)
....|..|.+... ..+|..|+.. |-++|++.
T Consensus 18 ~~~~C~~Cg~~i~~gkq~~kC~dC~~~--cH~~C~~~ 52 (61)
T 4b6d_A 18 KPESCVPCGKRIKFGKLSLKCRDCRVV--SHPECRDR 52 (61)
T ss_dssp SCEECTTTCCEECTTCEEEEESSSSCE--ECGGGGGG
T ss_pred CCcccccccCEEEEeeEeeECCCCCCe--EchhHhhc
Confidence 4689999977742 5789999975 99999764
No 377
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=24.49 E-value=2.2e+02 Score=23.02 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=29.8
Q ss_pred hHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829 378 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 419 (455)
Q Consensus 378 ~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~ 419 (455)
++..+++ +.+.-+-.+.++|..|-..|...+|.+++.+|-+
T Consensus 113 i~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 113 IGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4444445 3333345588999999999999999999999864
No 378
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.43 E-value=1.3e+02 Score=29.21 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829 323 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 377 (455)
Q Consensus 323 ~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 377 (455)
++..++-++.+...........++...-+..-++++|+..|+|++|++++..++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
No 379
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=24.43 E-value=53 Score=23.04 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=19.3
Q ss_pred hCccCCCCCCcccccCCCCCCcccCCCCCcCC
Q 012829 265 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 296 (455)
Q Consensus 265 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~ 296 (455)
.+.|+ .|+..-+.......|.|.+|+....
T Consensus 26 ky~C~--fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 26 RYDCS--FCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp CBCCS--SCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred CccCC--CCCCceeEecCCCeEECCCCCCEEe
Confidence 56675 4654433344456799999998653
No 380
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=24.09 E-value=31 Score=26.95 Aligned_cols=36 Identities=22% Similarity=0.620 Sum_probs=21.9
Q ss_pred ecCCCCCCccCccccCcCC----CcCCCCCCccccCCHHHhH
Q 012829 20 VPNNSSSISRCDGCFASSN----LKKCSACQVVWYCGSNCQK 57 (455)
Q Consensus 20 ~~~~~~~~~~C~~C~~~~~----~~~C~~C~~~~yCs~~C~~ 57 (455)
.+.+......|..|...-. ...|..|+.+ ||+. |..
T Consensus 12 ~~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~i-fC~~-Cs~ 51 (120)
T 1y02_A 12 FPSPTGLEPSCKSCGAHFANTARKQTCLDCKKN-FCMT-CSS 51 (120)
T ss_dssp --------CCCTTTCCCCSSGGGCEECTTTCCE-ECGG-GEE
T ss_pred CCcCccccCcccCcCCccccccccccCCCCCCe-eCHH-HhC
Confidence 3334445689999988733 4579999997 9974 754
No 381
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=23.99 E-value=2.6e+02 Score=26.01 Aligned_cols=65 Identities=8% Similarity=0.043 Sum_probs=33.7
Q ss_pred HHhhhcCCh---HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh
Q 012829 315 LALTSCGNH---QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 381 (455)
Q Consensus 315 ~~~~~~g~~---~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~ 381 (455)
......|+| -||-+.++.+.....+ .......++....-+..+...|++..|.+++.-+++.|++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~--~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~ 87 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQETRLVAARYSK--QGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQ 87 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence 334567898 7777766555432211 1222334444444555555555555555555555555544
No 382
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=23.97 E-value=27 Score=23.11 Aligned_cols=28 Identities=18% Similarity=0.553 Sum_probs=17.3
Q ss_pred hCccCCCCCCcccccCCCCCCcccCCCCCc
Q 012829 265 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLV 294 (455)
Q Consensus 265 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~ 294 (455)
...|| +|++.+.-......+.|..|+.+
T Consensus 18 ~~fCP--kCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCP--RCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCT--TTTTTCCCEECSSEEECTTTCCC
T ss_pred cccCc--CCCCceeEeccCCEEECCCCCCE
Confidence 35586 58654432222346899999976
No 383
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.81 E-value=3.6e+02 Score=23.39 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829 390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445 (455)
Q Consensus 390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~ 445 (455)
.+..|-..|..+...|++.+|...|+++++---. | ...+.....+-..+
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~------P-~~rL~~~~~~F~~R 197 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK------P-FLRFQQKYQQFTHR 197 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB------S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc------c-HHHHHHHHHHHHHH
Confidence 3566778899999999999999999999873222 3 44555555555444
No 384
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=23.76 E-value=50 Score=21.93 Aligned_cols=32 Identities=25% Similarity=0.680 Sum_probs=24.7
Q ss_pred CCCCccCccccCcC--CCcCCCCCCccccCCHHHhH
Q 012829 24 SSSISRCDGCFASS--NLKKCSACQVVWYCGSNCQK 57 (455)
Q Consensus 24 ~~~~~~C~~C~~~~--~~~~C~~C~~~~yCs~~C~~ 57 (455)
-...+.|++|.... ....|..|++. |-+.|..
T Consensus 19 ~~~pt~C~~C~~~i~kqg~kC~~C~~~--cH~kC~~ 52 (59)
T 1rfh_A 19 RGGPGWCDLCGREVLRQALRCANCKFT--CHSECRS 52 (59)
T ss_dssp SSCCEECTTTCSEECSCCEECTTTSCE--ECHHHHT
T ss_pred cCCCeEchhcchhhhhCccEeCCCCCe--Eehhhhh
Confidence 34578999997763 46789999975 8888875
No 385
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.55 E-value=56 Score=22.25 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=18.2
Q ss_pred CCCCccCccccCcC-----CCcCCCCCCc
Q 012829 24 SSSISRCDGCFASS-----NLKKCSACQV 47 (455)
Q Consensus 24 ~~~~~~C~~C~~~~-----~~~~C~~C~~ 47 (455)
....-.|..|.... ..++|+.|+.
T Consensus 18 ~~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 18 ATMIYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp -CCCCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred CCeEEECCCCCCeeecCCCCceECCCCCc
Confidence 34678899998873 3799999974
No 386
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar protein; 2.41A {Geobacillus stearothermophilus}
Probab=22.40 E-value=5e+02 Score=24.56 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhh
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 448 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~ 448 (455)
|......+.=+..+...|++++|+..|..+-+.+...- |. +..++......+....+.
T Consensus 170 ~Itv~~~~~~~~~a~~~g~l~~a~~~l~~v~~~l~kv~--d~-FkaeL~~aa~~a~~aYea 227 (412)
T 2ra1_A 170 DITVAMKAREAQDAVKAGNLDKAKAALDQVNQYVSKVT--DA-FKAELQKAAQDAKAAYEA 227 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCC--ST-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhhh--HH-HHHHHHHhhhhhhhhhcc
Confidence 33334444445667789999999999999999988874 33 778887777776554443
No 387
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=22.22 E-value=2.2e+02 Score=20.25 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhc
Q 012829 306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 339 (455)
Q Consensus 306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~ 339 (455)
.+..+...|...-..|++++|+.+|..+++....
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4445566666666789999999999988876443
No 388
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=22.00 E-value=93 Score=25.12 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 390 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 390 (455)
.+..-|..|..-|+.+.|.-++-+...++-..+| .||..
T Consensus 42 ~llr~A~~y~~egd~e~AYily~R~~~L~~e~Ip-kHpdy 80 (146)
T 2xze_A 42 EIIRMASIYSEEGNIEHAFILYNKYITLFIEKLP-KHRDY 80 (146)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGG-GSTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcc-cCccc
Confidence 3444678899999999999999998888876666 46654
No 389
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=21.74 E-value=1.6e+02 Score=23.86 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=33.0
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHh
Q 012829 317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 375 (455)
Q Consensus 317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 375 (455)
+..+|+-++..+++..+ ++ +++.-......++.+|...|+-.+|-++..++
T Consensus 101 lv~~~KkDqLdki~~~~-------l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREI-------LK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHTTCHHHHHHHHHHH-------C---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHH-------hc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 34566666655554433 22 33333455677999999999999998887664
No 390
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=21.68 E-value=40 Score=27.61 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=24.5
Q ss_pred CccCccccCcC-C----CcCCCCCCccccCCHHHhHh
Q 012829 27 ISRCDGCFASS-N----LKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 27 ~~~C~~C~~~~-~----~~~C~~C~~~~yCs~~C~~~ 58 (455)
...|++|.... | .+.=..+...+|||..|...
T Consensus 5 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~ 41 (158)
T 4a17_T 5 TGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCL 41 (158)
T ss_dssp CEECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHH
T ss_pred EEEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHH
Confidence 46799999883 2 33446788899999999865
No 391
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=21.51 E-value=3.7e+02 Score=24.60 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=38.5
Q ss_pred HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh
Q 012829 315 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 381 (455)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~ 381 (455)
......|+|-||.++++.+.....+ -..+...++....-+..+.+.|++..|.+++..+++.|++
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~--~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~ 85 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIANRYVR--SKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDL 85 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccChHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence 3345678999998887666543211 1123344455555566666667777776666666666654
No 392
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=21.46 E-value=3e+02 Score=21.58 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=28.7
Q ss_pred HHHHhhhcCCc-HHH---HHHHHHHHHhc---hhccCCC--ChhHHHHHHHHHHHHHHH
Q 012829 397 CGKLEWFLGDT-ENA---IKSMTEAVEIL---RITHGTN--SPFMKELILKLEEAQAEA 446 (455)
Q Consensus 397 La~l~~~~g~~-~eA---~~~l~~A~~i~---~~~~G~~--hp~~~~~~~~l~~~~~~~ 446 (455)
.|+.....|++ +++ -..+.||.+|+ ..++..+ .+....+......+..++
T Consensus 35 ~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~GgeiA~nL~~LY~y~~~~L 93 (130)
T 1orj_A 35 RAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLDTIYTIILNTL 93 (130)
T ss_dssp HHHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHHH
Confidence 35555667777 777 66777777775 3344444 344444555555555554
No 393
>2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous dispersion, cancer/testis 1.4, melanoma antigen family A 4, CT1.4, MAGE-41; 2.30A {Homo sapiens}
Probab=21.36 E-value=72 Score=28.24 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=44.1
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 439 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l 439 (455)
..-|.+|+.+.-||.+.+.-+...|.. +-+.+..+...-|.+||...+....|
T Consensus 118 ~~~pk~GLL~~IL~~Ifm~gn~~~Ee~--Lw~~L~~lgv~~g~~h~ifG~~rkli 170 (240)
T 2wa0_A 118 QIFPKTGLLIIVLGTIAMEGDSASEEE--IWEELGVMGVYDGREHTVYGEPRKLL 170 (240)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCEEHHH--HHHHHHHTTCCTTSCBTTTBCHHHHH
T ss_pred cccchhhHHHHHHHHHHHcCCCCCHHH--HHHHHHhcCCCCCCcCcCCCCHHHHH
Confidence 457899999999999999988887754 66788888888899999987766666
No 394
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=21.26 E-value=1.8e+02 Score=27.52 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829 388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 423 (455)
Q Consensus 388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~ 423 (455)
-..+..++..|..+...+++.+|+..|+.|.+.+..
T Consensus 250 ~~~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 285 (376)
T 3r9m_A 250 FYTAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAK 285 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 344777777888888889999999888888777653
No 395
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=21.18 E-value=38 Score=23.00 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=26.7
Q ss_pred eecCCCCCCccCccccCcC-----CCcCCCCCCccccCCHHHhHh
Q 012829 19 CVPNNSSSISRCDGCFASS-----NLKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 19 ~~~~~~~~~~~C~~C~~~~-----~~~~C~~C~~~~yCs~~C~~~ 58 (455)
+.+..-...+.|++|...+ ....|..|++. |-+.|...
T Consensus 15 F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~--~Hk~C~~~ 57 (65)
T 2enz_A 15 FKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMN--VHHRCQTK 57 (65)
T ss_dssp EEECCCCSCCBCSSSCCBCCCSSSCSEEESSSCCE--ECTTTTTT
T ss_pred cEeEcCCCCcCchhcChhheecCCcccccCCCCCc--cCHhHHhh
Confidence 3333344679999998873 35789999874 88888653
No 396
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.16 E-value=56 Score=22.27 Aligned_cols=27 Identities=19% Similarity=0.549 Sum_probs=21.1
Q ss_pred CCccCcc--ccCc-CCCcCCCCCCccccCCH
Q 012829 26 SISRCDG--CFAS-SNLKKCSACQVVWYCGS 53 (455)
Q Consensus 26 ~~~~C~~--C~~~-~~~~~C~~C~~~~yCs~ 53 (455)
....|.. |-+. ..++.|..|+.. ||.+
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~-FC~~ 40 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRN-FCIK 40 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCB-CCHH
T ss_pred cCCCCCccCCCCCCccceECCCCCcc-cCcc
Confidence 4678988 9876 447899999986 8964
No 397
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=21.12 E-value=2.4e+02 Score=22.61 Aligned_cols=84 Identities=5% Similarity=-0.018 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-------------cccHH
Q 012829 300 IKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-------------LEDWK 366 (455)
Q Consensus 300 ~~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~-------------~g~~~ 366 (455)
+.-+.+.+-...+.|......|++++.-....++..+...+-.--+.. .+...+|..+|.. ....+
T Consensus 26 i~mLydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~e-geiA~nL~~LY~y~~~~L~~Ani~~D~~~ld 104 (145)
T 1vh6_A 26 TLMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQELNFTLNRN-IELSASMGAMYDYMYRRLVQANIKNDTGMLA 104 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 444555666666677777888898877666666555432221111222 4444455555522 23456
Q ss_pred HHHHHHHHhhhhHHhhcC
Q 012829 367 EALAYCQLTIPVYQRVYP 384 (455)
Q Consensus 367 ~A~~~~~~~l~~~~~~~g 384 (455)
++..+...+.+.++.+..
T Consensus 105 ev~~ll~~LreaW~~i~~ 122 (145)
T 1vh6_A 105 EVEGYVTDFRDAWKQAIQ 122 (145)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777777766544
No 398
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=21.06 E-value=41 Score=27.62 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=24.4
Q ss_pred CccCccccCcC-C----CcCCCCCCccccCCHHHhHh
Q 012829 27 ISRCDGCFASS-N----LKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 27 ~~~C~~C~~~~-~----~~~C~~C~~~~yCs~~C~~~ 58 (455)
...|++|.... | .+.=..+...+|||..|...
T Consensus 5 ~e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssKC~k~ 41 (162)
T 3iz5_Z 5 TELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRY 41 (162)
T ss_dssp CEECTTTCSEECSSCSEEEECTTSCEEEECSHHHHHH
T ss_pred EEEecCcCCcccCCCCeEEEecCCCEEEEECHHHHHH
Confidence 46799999883 2 34446888899999999764
No 399
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=20.92 E-value=40 Score=27.87 Aligned_cols=37 Identities=16% Similarity=0.401 Sum_probs=22.9
Q ss_pred hCccCCCCC-C----ccc----ccCCCCCCcccCCCCCcCCHHHHH
Q 012829 265 GYRCKDDGC-S----GFL----LRDSDDKGFTCQQCGLVRSKEEIK 301 (455)
Q Consensus 265 ~~~C~~~~C-~----g~~----~~~~~~~~~~C~~C~~~~~~~~~~ 301 (455)
-++|++++| . .++ +.+.+...+.|..|++..+.+++.
T Consensus 114 vl~C~Np~CITn~~~Epvs~F~v~~~~~~~lrC~YCe~~~~~~~i~ 159 (168)
T 1pg5_B 114 ILKCPNPYCITSNDVEAIPTFKTLTEKPLKMRCEYCETIIDENEIM 159 (168)
T ss_dssp SSCCSCTTBGGGTCTTSCCEEEEEETTTTEEEETTTCCEEEHHHHH
T ss_pred eEEcCCCCcccCCCCccccEEEEEcCCCCEEEeeCCCCEecHhHHh
Confidence 456777777 2 122 112224458999999998766654
No 400
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=20.75 E-value=4e+02 Score=25.54 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhh
Q 012829 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF 403 (455)
Q Consensus 351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~ 403 (455)
.+...+..+...+.|+.|+.+++.++..|+.. .+--.++..+..++++|..
T Consensus 90 ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~--~dy~~Ls~~~~~~a~~y~~ 140 (428)
T 2wm9_A 90 LLEQCADGLWKAERYELIADIYKLIIPIYEKR--RDFERLAHLYDTLHRAYSK 140 (428)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH
Confidence 34445555566778999999999999999986 3444556666666666543
No 401
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=20.68 E-value=40 Score=22.97 Aligned_cols=32 Identities=28% Similarity=0.627 Sum_probs=25.2
Q ss_pred CCCccCccccCcCC-----CcCCCCCCccccCCHHHhHh
Q 012829 25 SSISRCDGCFASSN-----LKKCSACQVVWYCGSNCQKL 58 (455)
Q Consensus 25 ~~~~~C~~C~~~~~-----~~~C~~C~~~~yCs~~C~~~ 58 (455)
...+.|++|...+. ...|..|++. |-+.|...
T Consensus 22 ~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~--~Hk~C~~~ 58 (66)
T 1y8f_A 22 TTPTYCYECEGLLWGIARQGMRCTECGVK--CHEKCQDL 58 (66)
T ss_dssp SSCCCCTTTCCCCCSSCCEEEEETTTCCE--ECTTHHHH
T ss_pred CCCcChhhcChhhcccCcceeEcCCCCCe--eCHHHHhh
Confidence 46799999988742 4689999975 88888764
No 402
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=20.49 E-value=2.5e+02 Score=20.44 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829 364 DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 443 (455)
Q Consensus 364 ~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~ 443 (455)
.+++|..+..++|.+=+.- .+.++..|+.+|+ +++..|.+++.|-..-.|+.-...+.++.++.+..
T Consensus 12 ~h~~AF~~Is~aL~~DE~~-~~G~k~~A~~~Yk------------kGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL 78 (89)
T 3eab_A 12 FHKQAFEYISIALRIDEDE-KAGQKEQAVEWYK------------KGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNL 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CSSSGGGSHHHHH------------HHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcc-cCCCHHHHHHHHH------------HHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHH
Confidence 4566666666666655532 2344444454443 33455666666655433333333344444444444
Q ss_pred HHH
Q 012829 444 AEA 446 (455)
Q Consensus 444 ~~~ 446 (455)
..+
T Consensus 79 ~~v 81 (89)
T 3eab_A 79 VMA 81 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 403
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=20.08 E-value=2.3e+02 Score=30.54 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=45.2
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhh
Q 012829 385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 448 (455)
Q Consensus 385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~ 448 (455)
...|.+-+.-.-..++|+.+|+|++|+++--.|-..+... ..|.++..+..+.-+...+++.
T Consensus 64 ~~f~~r~laalvaSkvyy~Lg~~~~al~yaL~aG~~fd~~--~~seYv~tiis~cid~y~~~~~ 125 (963)
T 4ady_A 64 DTFSDREMAALIASKVYYNLGEYESAVKYALAAKDRFDID--EKSQFVETIVSKSIEMYVQEAS 125 (963)
T ss_dssp TTCTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHGGGSCTT--SCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHheeccchHHHHHHHHhCCCcCCCC--CcchHHHHHHHHHHHHHHHHHh
Confidence 3344555555566889999999999999966666666644 6899999888777776555543
Done!