BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012831
(455 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis
thaliana GN=At2g05160 PE=2 SV=1
Length = 536
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/457 (52%), Positives = 303/457 (66%), Gaps = 44/457 (9%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQEQ----EMIHLAMSPDVVIQEVVYKAKA 56
M+F+ES +V RI++L+PEN KI GYLLL ++ +MI LA PD V+ V+ K
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 57 ELQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRV--PSYWDHQVTNKNN 114
EL + + S P S + +P +F F+ P+S + +W++
Sbjct: 61 ELARNSHHYHSPP-SDHIPTP------KFGSFTGSSPLSVSVSPPMKTGFWEN------- 106
Query: 115 SDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSD--CYYSDAALSNLGARAGR 172
S ++ LQ+ QFL+ ED + N FS + C L R R
Sbjct: 107 --------STEMDTLQNNLQFLNFEDPLTSPEFSNGFFSQERQC---------LPLRTSR 149
Query: 173 RYQSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLV---SESFTQMFGQTSPDGFNDDHLF 229
R SL E PVK CHYFNKGFCKHG+NCRY+HG + ESF QMF + + +++H+
Sbjct: 150 RSPSL-PEFPVKICHYFNKGFCKHGNNCRYFHGQIIPERESFAQMFNPNN-NLSDEEHVV 207
Query: 230 SPGSLEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSL 289
SP SLEKLE EIIELLK RRG PISIASLPM+YYEKYG+ LQA GYLTESQRHGKAGYSL
Sbjct: 208 SPVSLEKLEGEIIELLKLRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSL 267
Query: 290 TKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAES 349
TKLLARLKN++RL+DRPHGQH+VILAEDA K++E ER++ G I+ GSRQIYLTFPAES
Sbjct: 268 TKLLARLKNTIRLVDRPHGQHSVILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPAES 327
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409
+FTE DVS YF +YG V+DVRIPCQQKRM+GFVTFAS++TVK ILAKGNPHF+C ARVLV
Sbjct: 328 SFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLV 387
Query: 410 KPYREKSKLVDRKYQERMESPMYFSPQYVDMDSELHS 446
KPYREKS+ + M + ++++ D E+++
Sbjct: 388 KPYREKSRSSRYLDNYKPLHGMRYGSKFIERDIEMNT 424
>sp|Q6ZK57|C3H54_ORYSJ Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa
subsp. japonica GN=Os08g0126700 PE=2 SV=2
Length = 653
Score = 338 bits (868), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 211/502 (42%), Positives = 280/502 (55%), Gaps = 63/502 (12%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
M+ E ++ F R+++++PE+V KI G +LL+E E++ LA P+ + + KA
Sbjct: 50 MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAA 109
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSF------QFNPFSSRPPVSPAG------------- 98
L + + +++ V Q SRPPV G
Sbjct: 110 LTVIYARCSAAAAHGPPGGGGVGVGGGGGYHQQPQQLFSRPPVPACGGVRHHYSPAAAAA 169
Query: 99 ------CRVPSYWDHQV----TNKNNSDFVALGYSDSINELQSQTQFLSLEDQMEHVNLG 148
+ P YW T +F G + + ++ + Q HV L
Sbjct: 170 AAFGYQVQSPQYWPDSPPAPPTKAAQQEFAPPGL---VVDASAEGPYPLRGGQ--HV-LD 223
Query: 149 NTGFSSDCYY--SDAALSNLG-------ARAGRRYQSLNAELPVKTCHYFNKGFCKHGSN 199
+ F YY + A N G ARA RR L+ P CHYF+KG CK+G N
Sbjct: 224 DNNFGGGYYYPAGEDAFPNGGGGGGGSPARA-RRSNGLSTRRP---CHYFSKGICKNGQN 279
Query: 200 CRYYHGLVSESFTQMFGQTSPDGFNDDHL---FSPGSLEKLELEIIELLKARRGNPISIA 256
C Y H V + + +G +H +PGSLE LE+EI ELL +RRG P+SIA
Sbjct: 280 CHYSHHQV---YQDALAGAAINGDVYNHQPGGVTPGSLETLEMEITELLNSRRGQPVSIA 336
Query: 257 SLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAE 316
SLP LY EKYGK LQA GYLTESQRHGKAGYSLT+LL+RL N +R+I+RPHGQH+V+LAE
Sbjct: 337 SLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRL-NKIRVIERPHGQHSVVLAE 395
Query: 317 DAPKYLENRNERS----DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP 372
DA KY++ R D G + S QIYLTFPAESTF EDDV+NYF YGPV DVRIP
Sbjct: 396 DAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIP 455
Query: 373 CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPM- 431
CQ++RMFGFV+F S +TV IL + NPHF+CG+RVLVKPYREKSK VDR + ++S +
Sbjct: 456 CQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRTCVDNIKSMVP 515
Query: 432 YFSPQYVDMDSELHSCNFTRMR 453
Y P++ + D EL++ + R
Sbjct: 516 YCPPRFFEFDQELYTAEYDASR 537
>sp|Q84ZT0|C3H51_ORYSJ Putative zinc finger CCCH domain-containing protein 51 OS=Oryza
sativa subsp. japonica GN=Os07g0583300 PE=4 SV=1
Length = 513
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 155/240 (64%), Gaps = 24/240 (10%)
Query: 186 CHY-FNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIEL 244
CH+ F +G+CK G NC+++HG V P+ N + SL KL++EI EL
Sbjct: 182 CHFHFFRGYCKKGVNCQFFHGSV------------PELHNPRQVHPFASLSKLDMEIREL 229
Query: 245 LKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLID 304
L P+++ LP +Y+EKYGK L+ G+LTESQ+HG+ G SLT LL L N++R+++
Sbjct: 230 LIGI-PPPVAVDRLPSMYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGL-NTIRVVE 287
Query: 305 RPHGQHAVILAEDAPKY------LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSN 358
R HGQ+ V+L EDA K L + D G TGS QIY+TFP S FT+DDV N
Sbjct: 288 REHGQYHVVLVEDARKKYMDCLGLAHSCNLMDTG---TGSNQIYMTFPVHSKFTDDDVEN 344
Query: 359 YFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
YF +GPV VRIP Q+KRMFGFV+F +TV++IL+KG HF+CG RVLVK Y EKS+L
Sbjct: 345 YFKQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSEL 404
>sp|Q9SV09|C3H46_ARATH Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis
thaliana GN=At3g51950 PE=1 SV=1
Length = 540
Score = 205 bits (522), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 163/446 (36%), Positives = 218/446 (48%), Gaps = 96/446 (21%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+TRIV +RI+ LDPEN +KI+G LLLQ E+EMI LA P+ ++ V+ KAK E
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 58 LQQLAMKSASSPIS--PSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKN-N 114
L M + SP S + SP N NP S +P Y + ++++
Sbjct: 61 LG--LMNCSRSPWSHQDELISPKNNRGSSLNPAS-----------LPFYANGGRSSRDLT 107
Query: 115 SDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRY 174
+DF + D +N T FL H G+ Y D+ L G
Sbjct: 108 NDFELM---DDMN--SRSTDFLG----SVHARSGSCVLDGLGYGGDSDLGFGGV------ 152
Query: 175 QSLNAELPVKTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSL 234
C YF +GFCK+G++CR+ H S+ + G S
Sbjct: 153 ----------PCSYFARGFCKNGASCRFVH---SDGGADLVGSPS--------------- 184
Query: 235 EKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLA 294
IELL R N + P L + ++T R +S TK +
Sbjct: 185 ------RIELL---RSNSVP----PRLAHH----------FMT---RSSLPSFS-TKGVN 217
Query: 295 RLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVT-GSRQIYLTFPAESTFTE 353
+N V+ A+++ ++ K R ER D + SRQIYLTFPA+S F E
Sbjct: 218 LQQNDVQ-----RAAAALMIGDELQKLGRWRPERIDLSAMACPASRQIYLTFPADSRFRE 272
Query: 354 DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413
+DVSNYF+T+GPV DVRIP QQKRMFGFVTF +TVK ILAKGNPHFVC +RVLVKPY+
Sbjct: 273 EDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYK 332
Query: 414 EKSKLVDRKYQERMESPMYFSPQYVD 439
EK K+ D KY+ + SP +D
Sbjct: 333 EKGKVPD-KYRTNQTTERELSPTGLD 357
>sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa
subsp. japonica GN=Os03g0329200 PE=2 SV=1
Length = 677
Score = 201 bits (512), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 163/493 (33%), Positives = 232/493 (47%), Gaps = 88/493 (17%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q+ +EMI LA P+ ++ V+ +A+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 58 LQQLA--MKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDHQVTNKNNS 115
L L ++SSP P+ +SP +S Q + P S P + + N +
Sbjct: 61 LALLPPPQAASSSPTVPAAHSPF-LLSRQNSGRCPAPSPSSWAQAQPFSRSNSMGNGGAA 119
Query: 116 D-------------------------FVALGYSDSINELQSQTQFLSLEDQMEHVNLGNT 150
D F G +++ + Q Q L D VN G+
Sbjct: 120 DEMVGAGEELMSPLNGGGGAAANAPPFFPRGGDALLDDFELQEQLAFLHDGAGGVNPGHA 179
Query: 151 --------------GFSSDCYYSDAALSNLGARAGRRYQSLNAELPV-------KTCHYF 189
G S A +N G RR S+N EL + K C Y+
Sbjct: 180 LQAFDGAECRSPGPGESGGMLPYGLAWAN-GGPGHRRSASVN-ELCLGGDGFGWKPCLYY 237
Query: 190 NKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIELL-KAR 248
+GFCK+GS CR+ HG G +DD + E+ + + L K++
Sbjct: 238 ARGFCKNGSTCRFVHG----------------GLSDDAAMDATTAEQQQCQDFLLRSKSQ 281
Query: 249 RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHG 308
R P + P G L S SL + N +
Sbjct: 282 RLGPAAFPFTPT-------------GSLPASPSATSKCLSLLLQQQQQHNDNQRAAA--A 326
Query: 309 QHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
+ ++A K++ R +R D ++ GSRQIYLTFPA+STF E+DVSNYF+ YGPV
Sbjct: 327 ALMLAGGDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPV 386
Query: 367 DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQER 426
DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D+ +++
Sbjct: 387 HDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQ 446
Query: 427 MESPMYFSPQYVD 439
SP +D
Sbjct: 447 QGDFCCMSPTGLD 459
>sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa
subsp. japonica GN=Os07g0682400 PE=2 SV=1
Length = 682
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 157/482 (32%), Positives = 231/482 (47%), Gaps = 87/482 (18%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G+LL+Q E+EMI LA P+ ++ V+ KA+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 58 LQQLAMKSASSPISPSMNSPVNEVSFQFN--------------------------PFSSR 91
L L +P S + + F + FS
Sbjct: 61 LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN 120
Query: 92 PPVS-PAGCRVPSYWDHQVTNKNNSDFVA--LGYSDSINELQSQTQFLSLED-------Q 141
+S AG + D ++ N + G ++ELQ Q Q L + Q
Sbjct: 121 NSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAGHQ 180
Query: 142 MEHVNLGNT----GFSSDCYYSDAALSNLGARAGRRYQSLNA-------ELPVKTCHYFN 190
M + G G + + +N G RR S++ L K C Y+
Sbjct: 181 MPMFDGGECRSPGGGDGGLFSYNLGWAN-GGPGHRRSASVSELCLGGADGLGWKPCLYYA 239
Query: 191 KGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHL--FSPGSLEKLELEIIELLKAR 248
+G+CK+GS CR+ HG G DD P ++E+ + + K++
Sbjct: 240 RGYCKNGSACRFVHG----------------GLPDDAAGKMDPSAVEQQCQDFLIRSKSQ 283
Query: 249 RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHG 308
R ++ A+ P Y G + + T+ R + L+
Sbjct: 284 R---LAAAAFP---YSPTGSLPGSPSAATKCLSLLLQQQQQQNESQRAAAAAALM----- 332
Query: 309 QHAVILAEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366
+ ++A K++ R ER+D ++ GSRQIYLTFPA+STF E+DVSNYF+ YGPV
Sbjct: 333 ----LGGDEAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPV 388
Query: 367 DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQER 426
DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D KY+++
Sbjct: 389 HDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPD-KYRKQ 447
Query: 427 ME 428
+
Sbjct: 448 HQ 449
>sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa
subsp. japonica GN=Os03g0328900 PE=2 SV=2
Length = 688
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 144/248 (58%), Gaps = 38/248 (15%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLFSPGSLEKLELEIIE 243
K C Y+ +GFCK+GS+CR+ HG + + T + E+ + +
Sbjct: 237 KPCLYYARGFCKNGSSCRFVHGDDAAALTGA-------------AMDAATAEQQQCQDFL 283
Query: 244 LL-KARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRL 302
L K++R P A+ P Y G + + T+ L+ LL + N +
Sbjct: 284 LRSKSQRLGP---AAFP---YSPTGSLPGSPSAATKC---------LSLLLQQQHNDNQ- 327
Query: 303 IDRPHGQHAVIL--AEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSN 358
R A++L +++A K++ R +R D ++ GSRQIYLTFPA+STF E+DVSN
Sbjct: 328 --RAAAAAALMLGGSDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSN 385
Query: 359 YFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
YF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+
Sbjct: 386 YFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKV 445
Query: 419 VD--RKYQ 424
D RK+Q
Sbjct: 446 PDKYRKHQ 453
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD E+T++VF+RI+ LDP++ KI+G LL+Q ++EMI LA P+ ++ V+ +A+ E
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 58 LQQL 61
L L
Sbjct: 61 LALL 64
>sp|Q94CJ8|C3H55_ARATH Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis
thaliana GN=At5g12440 PE=2 SV=3
Length = 650
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 132/254 (51%), Gaps = 59/254 (23%)
Query: 184 KTCHYFNKGFCKHGSNCRYYHGLVSESFTQMFGQTSPDGFNDDHLF--SPGSLEKLELEI 241
K C YF++G CK+G +C++ HG PD + + + SP +E +
Sbjct: 231 KPCVYFSRGLCKNGESCKFIHG------------GYPDNMDGNGIVADSPRKMENFVRQH 278
Query: 242 IELLKAR------RGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKL--- 292
E+++ + R + P L YEK L +QR G + +
Sbjct: 279 EEMMRLKLAYQQQRLASQILGRAPQLPYEKRMDFL----LQQHAQRDGGLPFGDERFWSS 334
Query: 293 ----LARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAE 348
L R++ ++ L D+ + + SRQIYLTFPA+
Sbjct: 335 SPGRLERMELAMHLGDQSN----------------------------SASRQIYLTFPAD 366
Query: 349 STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408
STF ++DV+ YF+ +G V DVRIP QQKRMFGFV+FA +TVK++LA+GNPHF+C +RVL
Sbjct: 367 STFKDEDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVL 426
Query: 409 VKPYREKSKLVDRK 422
VKPY+EK K++D+K
Sbjct: 427 VKPYKEKGKVLDKK 440
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQ---EQEMIHLAMSPDVVIQEVVYKAKAE 57
MD ++T ++ +I+ L+P+ KIIGYLLL +++++HLA P+ ++Q + K K+
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 58 L 58
L
Sbjct: 61 L 61
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAKGNPHFVCGARVLVK 410
FGFVTF D V K++L K H + G V+
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK--HHTINGHNAEVR 185
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK 173
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 154 GFGFVTFDDHDPVDKIVLQK 173
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 84 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFAEYGKIDTIEIITDRQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAK 396
FGFVTF D V K++L K
Sbjct: 142 GFGFVTFDDHDPVDKIVLQK 161
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK---RMFGFVTFASADT 389
P S+ I P EST E + F YG + VRIP + R FGFV F + +
Sbjct: 790 PNKPSSKIIIKNLPFESTIKE--IRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEE 847
Query: 390 VKMIL-AKGNPHFVCGARVLVKPYREKSKLVD 420
K + A GN HF R LV Y E+ K +D
Sbjct: 848 AKNAMEALGNSHFY--GRHLVLQYAEQDKNID 877
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++GK+ + + + G+ + + + RPH ++ PK
Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSR-GFGFVTFSSMAEVDAAMAARPHSIDGRVVE---PKR 95
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
R E PG VT +++++ E T E + +YF YG +D + I +KR
Sbjct: 96 AVAREESGKPGAHVT-VKKLFVGGIKEDT-EEHHLRDYFEEYGKIDTIEIITDRQSGKKR 153
Query: 378 MFGFVTFASADTVKMIL 394
FGFVTF D V I
Sbjct: 154 GFGFVTFDDHDPVDKIF 170
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 352 TEDDVSNYFNTYGPVDD---VRIPCQQK-RMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + NY+ +G + D +R P ++ R FGFVTF+S V +A PH + G
Sbjct: 33 TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGR-- 89
Query: 408 LVKPYR 413
+V+P R
Sbjct: 90 VVEPKR 95
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 350 TFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAKGNPHFVCGA 405
T T+++ YF YGPV DV I Q R FGFV+F S D V +L K H + G
Sbjct: 120 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHDLSGK 178
Query: 406 RVLVK 410
+V VK
Sbjct: 179 QVEVK 183
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 286 GYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTF 345
G+ L+ + + RPH ++ PK +R + S PG +T ++I++
Sbjct: 56 GFGFVTYLSTDEVDAAMTARPHKVDGRVVE---PKRAVSREDSSRPGAHLT-VKKIFVGG 111
Query: 346 PAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMIL 394
E T ED + YF YG ++ + I +KR F FVTF D+V I+
Sbjct: 112 IKEDT-EEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 13/164 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
YYE++G + + + + G+ + + RPH ++ PK
Sbjct: 28 YYEQWGTLTDCVVMRDPASKRSR-GFGFVTFSCMNEVDAAMATRPHTIDGRVVE---PKR 83
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKR 377
R E + PG VT +++++ E T E + YF YG +D + I +KR
Sbjct: 84 AVAREESAKPGAHVT-VKKLFVGGIKEDT-EEHHLREYFEEYGKIDSIEIITDKQSGKKR 141
Query: 378 MFGFVTFASADTV-KMILAKGNPHFVCGARVLVKPYREKSKLVD 420
F FVTF D V K++L K H + G V+ K ++ D
Sbjct: 142 GFAFVTFDDHDPVDKIVLQK--YHTINGHNAEVRKALSKQEMQD 183
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 352 TEDDVSNYFNTYGPVDD---VRIPCQQK-RMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + NY+ +G + D +R P ++ R FGFVTF+ + V +A PH + G
Sbjct: 21 TEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT-RPHTIDGR-- 77
Query: 408 LVKPYR 413
+V+P R
Sbjct: 78 VVEPKR 83
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH ++ PK R E + PG VT +++++ E T E + YF YG
Sbjct: 70 RPHTIDGRVVE---PKRAVAREESAKPGAHVT-VKKLFVGGIKEDT-EEHHLREYFEEYG 124
Query: 365 PVDDVRI----PCQQKRMFGFVTFASADTV-KMILAKGNPHFVCGARVLVKPYREKSKLV 419
++ I +KR FGFVTF D V K++L K H + G V+ K ++
Sbjct: 125 KIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQK--YHTINGHNAEVRKALSKQEMQ 182
Query: 420 D 420
D
Sbjct: 183 D 183
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 13/74 (17%)
Query: 343 LTFPAESTF--------TEDDVSNYFNTYGPVDDVRIPC--QQKRM--FGFVTFASADTV 390
L+ P+++ F TEDD+S F G + +R+P Q R+ FG+VTF+ D+
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSA 420
Query: 391 KMILAKGNPHFVCG 404
K + N HF+ G
Sbjct: 421 KKCVEM-NGHFIAG 433
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF D VK +L K H V G++
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 408 LVK 410
+K
Sbjct: 230 EIK 232
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
++EK+G L + + Q G+ + + RPH ++ PK
Sbjct: 54 HFEKWG-TLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE---PKR 109
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
+R + PG +T ++I++ E T E ++ +YF YG ++ + + +KR
Sbjct: 110 AVSREDSVKPGAHLT-VKKIFVGGIKEDT-EEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167
Query: 378 MFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
F FVTF DTV I+ + H + G VK K ++
Sbjct: 168 GFAFVTFDDHDTVDKIVVQ-KYHTINGHNCEVKKALSKQEM 207
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
++EK+G L + + Q G+ + + RPH ++ PK
Sbjct: 54 HFEKWG-TLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE---PKR 109
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
+R + PG +T ++I++ E T E ++ +YF YG ++ + + +KR
Sbjct: 110 AVSREDSVKPGAHLT-VKKIFVGGIKEDT-EEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167
Query: 378 MFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
F FVTF DTV I+ + H + G VK K ++
Sbjct: 168 GFAFVTFDDHDTVDKIVVQ-KYHTINGHNCEVKKALSKQEM 207
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
++EK+G L + + Q G+ + + RPH ++ PK
Sbjct: 54 HFEKWG-TLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE---PKR 109
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
+R + PG +T ++I++ E T E ++ +YF YG ++ + + +KR
Sbjct: 110 AVSREDSVKPGAHLT-VKKIFVGGIKEDT-EEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167
Query: 378 MFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
F FVTF DTV I+ + H + G VK K ++
Sbjct: 168 GFAFVTFDDHDTVDKIVVQ-KYHTINGHNCEVKKALSKQEM 207
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 14/139 (10%)
Query: 286 GYSLTKLLARLKNSVRLIDRPH--GQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYL 343
G+ + + + RPH V P+ +NR+E + ++++Y+
Sbjct: 65 GFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESN------VSTKRLYV 118
Query: 344 TFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNP 399
+ E TED ++ YF YG V I Q+ R FGFVTF D+V + +
Sbjct: 119 SGVRED-HTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ-KS 176
Query: 400 HFVCGARVLVKPYREKSKL 418
H V G R V+ K ++
Sbjct: 177 HMVNGHRCDVRKGLSKDEM 195
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + T T +DV +YF +GP++D + + R FGFVTF S D
Sbjct: 113 MVTRTKKIFVGGLSAPT-TLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDV 171
Query: 390 VKMI 393
V +
Sbjct: 172 VDKV 175
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
+ + + +YF YG + + + ++ R FGFVTF+ ++V +L +G H + G +V
Sbjct: 41 SPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGT-HELDGKKV 99
Query: 408 LVK---PYREKSKLVDR 421
K P R K+V R
Sbjct: 100 DPKVAFPRRAHPKMVTR 116
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 39.3 bits (90), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
++E++GK+ + + Q G+ + + RPH ++ PK
Sbjct: 46 HFEQWGKLTDCV-VMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVE---PKR 101
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
+R + + PG +T ++I++ E T E + +YF YG ++ + + +KR
Sbjct: 102 AVSREDSARPGAHLT-VKKIFVGGIKEDT-EEYHLRDYFEGYGKIETIEVMEDRQSGKKR 159
Query: 378 MFGFVTFASADTVKMILAK 396
F FVTF DTV I+ +
Sbjct: 160 GFAFVTFDDHDTVDKIVVQ 178
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes
GN=mkrn1 PE=2 SV=1
Length = 429
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 185 TCHYFNKGFCKHGSNCRYYHGLVS 208
TC YF G CK G NCRY H L S
Sbjct: 23 TCRYFMHGLCKEGDNCRYSHDLTS 46
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
TE+ + YF +G ++ + +P ++R F F+TF + VK +L K H V G++
Sbjct: 166 TEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKC 224
Query: 408 LVK 410
+K
Sbjct: 225 EIK 227
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV +YF +G VDD + + R FGFVTF S D
Sbjct: 104 MVTRTKKIFVGGLSVNT-TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 162
Query: 390 VKMI 393
V+ +
Sbjct: 163 VEKV 166
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV +YF +G VDD + + R FGFVTF S D
Sbjct: 104 MVTRTKKIFVGGLSVNT-TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 162
Query: 390 VKMI 393
V+ +
Sbjct: 163 VEKV 166
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADT 389
+VT +++I++ + +T T +DV YF +G VDD + + R FGFVTF S D
Sbjct: 104 MVTRTKKIFVGGLSVNT-TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 162
Query: 390 VKMI 393
V+ +
Sbjct: 163 VEKV 166
>sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1
Length = 414
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
SR++++ E TED++ +F+ YG V DV IP + R F FVTFA D + L
Sbjct: 190 SRKVFVGRCTED-MTEDELREFFSQYGDVMDVFIP-KPFRAFAFVTFAD-DQIAQSL--- 243
Query: 398 NPHFVCGARVLVK 410
CG +++K
Sbjct: 244 -----CGEDLIIK 251
>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1
Length = 414
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397
SR++++ E TED++ +F+ YG V DV IP + R F FVTFA D + L
Sbjct: 190 SRKVFVGRCTED-MTEDELREFFSQYGDVMDVFIP-KPFRAFAFVTFAD-DQIAQSL--- 243
Query: 398 NPHFVCGARVLVK 410
CG +++K
Sbjct: 244 -----CGEDLIIK 251
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH ++ PK +R + PG +T ++I++ E T E + +YF YG
Sbjct: 75 RPHKVDGRVVE---PKRAVSREDSQRPGAHLT-VKKIFVGGIKEDT-EEHHLRDYFEQYG 129
Query: 365 PVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419
++ + I +KR F FVTF D+V I+ + H V G V+ K ++
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH ++ PK +R + PG +T ++I++ E T E + +YF YG
Sbjct: 75 RPHKVDGRVVE---PKRAVSREDSQRPGAHLT-VKKIFVGGIKEDT-EEHHLRDYFEQYG 129
Query: 365 PVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419
++ + I +KR F FVTF D+V I+ + H V G V+ K ++
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH ++ PK +R + PG +T ++I++ E T E + +YF YG
Sbjct: 75 RPHKVDGRVVE---PKRAVSREDSQRPGAHLT-VKKIFVGGIKEDT-EEHHLRDYFEQYG 129
Query: 365 PVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419
++ + I +KR F FVTF D+V I+ + H V G V+ K ++
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187
>sp|P07071|NRDD_BPT4 Anaerobic ribonucleoside-triphosphate reductase OS=Enterobacteria
phage T4 GN=NRDD PE=1 SV=4
Length = 605
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 24/120 (20%)
Query: 9 IVFNRIKKLDPENVTKIIGYLLLQEQEMIHLAMSPDVVIQEVVYKAKA--ELQQLAMKSA 66
I+ NRIK L + +T I L++ +E ++L YK +++QLA++ A
Sbjct: 214 ILKNRIKGLGRDGITPIFPKLVMFVEEGVNL------------YKDDPNYDIKQLALECA 261
Query: 67 SSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCR-VPSYWDHQVTN-----KNNSDFVAL 120
S + P + S N + S PVSP GCR S W N +NN V L
Sbjct: 262 SKRMYPDIISAKNNKAIT----GSSVPVSPMGCRSFLSVWKDSTGNEILDGRNNLGVVTL 317
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH ++ PK +R + PG +T ++I++ E T E + +YF YG
Sbjct: 75 RPHKVDGRVVE---PKRAVSREDSQRPGAHLT-VKKIFVGGIKEDT-EEHHLRDYFEQYG 129
Query: 365 PVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419
++ + I +KR F FVTF D+V I+ + H V G V+ K ++
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY 321
++E++GK+ + + Q G+ + + RPH ++ PK
Sbjct: 46 HFEQWGKLTDCV-VMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVE---PKR 101
Query: 322 LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI----PCQQKR 377
+R + + PG +T ++I++ E T E + +Y +YG ++ + + +KR
Sbjct: 102 AVSREDSARPGAHLT-VKKIFVGGIKEDT-EEYHLRDYSESYGKIETIEVMEDRQSGKKR 159
Query: 378 MFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418
F FVTF DTV I+ + H + G VK K ++
Sbjct: 160 GFAFVTFDDHDTVDKIVVQ-KYHTINGHNCEVKKALSKQEM 199
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 185 TCHYFNKGFCKHGSNCRYYHGLVS--ESFTQMFGQTSPDGFND 225
TC YF G CK G NCRY H L S ++ F Q F D
Sbjct: 23 TCRYFMHGLCKEGENCRYSHDLSSCKQTMICKFFQKGCCAFGD 65
>sp|Q6YYC0|C3H55_ORYSJ Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa
subsp. japonica GN=Os08g0135800 PE=2 SV=1
Length = 958
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 186 CHYFNKGFCKHGSNCRYYH-------GLVSESFTQMFGQTSPD 221
CH F KG C G+NCRY H G E G++ PD
Sbjct: 320 CHDFVKGRCSRGANCRYVHDDSTPHGGWRDEVRDNAIGRSGPD 362
>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola
quinqueradiata GN=mkrn1 PE=2 SV=1
Length = 435
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 185 TCHYFNKGFCKHGSNCRYYHGLVSESFTQMF 215
TC YF G CK G NCRY H L + M
Sbjct: 23 TCRYFMHGLCKEGDNCRYSHDLTNSKPAAMI 53
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 305 RPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364
RPH ++ PK +R + PG +T ++I++ E T E + +YF YG
Sbjct: 75 RPHKVDGRVVE---PKRAVSREDSQRPGAHLT-VKKIFVGGIKEDT-EEHHLRDYFEQYG 129
Query: 365 PVDDVRI----PCQQKRMFGFVTFASADTVKMIL 394
++ + I +KR F FVTF D+V I+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 351 FTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
+TE+ + +F+ G V DV++ + + R F F+ + SAD + + N F+ AR+
Sbjct: 13 YTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARI 72
Query: 408 LVK------------PYREKSKLVDRKYQERME 428
V+ ++EK K ++K ++ E
Sbjct: 73 EVEFAKTFSDPTVPLSFKEKRKREEQKLKDEQE 105
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Query: 237 LELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARL 296
+E+E I + + P+ I S E G VL + +Q G G + +
Sbjct: 1 MEMEYIRVAEDENEEPMEIPS------EDDGTVLLS---TVTAQFPGACGLRYRNPVNQC 51
Query: 297 KNSVRLIDR-----PHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQ-------IYLT 344
VRL++ +G ++ + PK + + + +D V R I L
Sbjct: 52 MRGVRLVEGILHAPENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAVTKTSDLIVLG 111
Query: 345 FPAESTFTEDDVSNYFNTYGPVDDVRIPCQQK----RMFGFVTFASADTVKMILAK 396
P ++T E D+ +YF+T+G V V++ K + FGFV FA +T ++++
Sbjct: 112 LPWKTT--EQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQ 165
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 352 TEDDVSNYFNTYGPVDDVRI----PCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407
T++++S YF +G + D + + R FGFVTFA V +L G PH + G +
Sbjct: 19 TQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG-PHTLDGRTI 77
Query: 408 LVKP 411
KP
Sbjct: 78 DPKP 81
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 316 EDAPKYLENR-------NERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD 368
++ P L+ R N R+ P G +++L S TE D+ +FN YG V +
Sbjct: 66 QNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGG-LPSNVTETDLRTFFNRYGKVTE 124
Query: 369 VRIPCQQK----RMFGFVTFASADTVKMI 393
V I Q+ R FGF++F +V+ +
Sbjct: 125 VVIMYDQEKKKSRGFGFLSFEEESSVEHV 153
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 332 GPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASADT 389
G + G R++Y+T + E DV +F YG V+ VRIP + Q + FG+V +
Sbjct: 751 GAVYEG-RELYVT-NIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQD 808
Query: 390 VKMILAKGNPHFVCGARVL 408
+ L+ G RVL
Sbjct: 809 AENALSAAGKQL--GNRVL 825
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 185 TCHYFNKGFCKHGSNCRYYHGLVSESFTQMF 215
TC YF G CK G NCRY H L + M
Sbjct: 23 TCRYFMHGLCKEGDNCRYSHDLTNSKPAAMI 53
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 185 TCHYFNKGFCKHGSNCRYYHGL 206
TC YF G CK G+NCRY H L
Sbjct: 56 TCRYFMHGVCKKGNNCRYSHDL 77
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 175 QSLNAELPVKTCHYFNKGFCKHGSNCRYYHG 205
Q N E+ + C Y G C++G NC Y HG
Sbjct: 199 QQTNVEMKKQLCPYAAVGECRYGENCVYLHG 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,924,269
Number of Sequences: 539616
Number of extensions: 7364920
Number of successful extensions: 17943
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 17737
Number of HSP's gapped (non-prelim): 253
length of query: 455
length of database: 191,569,459
effective HSP length: 121
effective length of query: 334
effective length of database: 126,275,923
effective search space: 42176158282
effective search space used: 42176158282
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)