Query 012831
Match_columns 455
No_of_seqs 359 out of 2134
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.8 1.9E-18 4.1E-23 177.2 14.0 134 262-419 127-279 (346)
2 KOG0144 RNA-binding protein CU 99.8 9.2E-19 2E-23 178.3 10.4 138 262-423 54-214 (510)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.8E-17 6.1E-22 166.8 16.2 77 340-417 271-351 (352)
4 TIGR01645 half-pint poly-U bin 99.7 3.7E-17 8E-22 177.2 16.4 141 252-416 109-285 (612)
5 KOG0148 Apoptosis-promoting RN 99.7 1.8E-17 4E-22 160.7 12.3 133 262-420 82-243 (321)
6 KOG4205 RNA-binding protein mu 99.7 2.3E-17 5E-22 166.1 8.8 134 262-420 26-181 (311)
7 TIGR01622 SF-CC1 splicing fact 99.7 1.7E-16 3.6E-21 167.1 15.6 139 252-414 91-265 (457)
8 TIGR01628 PABP-1234 polyadenyl 99.7 2.8E-16 6.1E-21 170.1 14.9 136 262-422 198-371 (562)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.3E-16 9.3E-21 158.2 13.6 131 262-416 23-172 (352)
10 TIGR01628 PABP-1234 polyadenyl 99.6 1E-15 2.2E-20 165.7 14.3 133 262-418 20-170 (562)
11 KOG0153 Predicted RNA-binding 99.6 5.8E-16 1.3E-20 154.6 11.3 79 335-416 225-304 (377)
12 PLN03134 glycine-rich RNA-bind 99.6 2E-15 4.4E-20 136.9 11.5 82 336-418 32-117 (144)
13 TIGR01648 hnRNP-R-Q heterogene 99.6 3.9E-14 8.5E-19 153.4 16.0 111 303-418 178-310 (578)
14 KOG0117 Heterogeneous nuclear 99.5 7.6E-14 1.7E-18 143.2 12.9 113 303-420 204-336 (506)
15 KOG0149 Predicted RNA-binding 99.5 1.5E-14 3.1E-19 138.5 6.6 75 337-413 11-89 (247)
16 KOG0127 Nucleolar protein fibr 99.5 6.9E-14 1.5E-18 146.3 11.9 135 262-420 25-201 (678)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.9E-13 4.1E-18 145.7 14.5 77 338-415 295-375 (509)
18 TIGR01648 hnRNP-R-Q heterogene 99.5 2.8E-13 6.1E-18 146.8 14.0 132 262-418 78-225 (578)
19 KOG0125 Ataxin 2-binding prote 99.5 1.3E-13 2.8E-18 137.1 8.5 81 336-417 94-176 (376)
20 KOG0145 RNA-binding protein EL 99.5 2.7E-13 5.9E-18 131.3 10.2 131 262-416 61-210 (360)
21 PF00076 RRM_1: RNA recognitio 99.4 3.2E-13 6.8E-18 104.8 8.3 67 341-408 1-70 (70)
22 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 9.3E-13 2E-17 140.7 14.3 76 339-415 97-174 (481)
23 TIGR01659 sex-lethal sex-letha 99.4 6.9E-13 1.5E-17 136.3 10.1 80 336-416 105-188 (346)
24 PLN03120 nucleic acid binding 99.4 8.9E-13 1.9E-17 129.4 10.2 75 338-414 4-79 (260)
25 KOG0117 Heterogeneous nuclear 99.4 1.8E-12 4E-17 133.2 11.5 146 250-419 83-252 (506)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 5.7E-12 1.2E-16 134.7 13.9 78 337-415 393-480 (481)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.3 7.5E-12 1.6E-16 133.5 13.5 139 252-414 297-501 (509)
28 KOG0147 Transcriptional coacti 99.3 2.4E-12 5.1E-17 135.3 9.2 159 260-419 197-362 (549)
29 PF14259 RRM_6: RNA recognitio 99.3 1E-11 2.2E-16 97.4 8.2 67 341-408 1-70 (70)
30 KOG0111 Cyclophilin-type pepti 99.3 2.3E-12 5E-17 122.3 4.7 79 337-416 9-91 (298)
31 PLN03213 repressor of silencin 99.3 8.2E-12 1.8E-16 129.6 8.9 78 337-415 9-88 (759)
32 smart00362 RRM_2 RNA recogniti 99.3 2.7E-11 5.8E-16 92.3 9.1 70 340-410 1-72 (72)
33 KOG0123 Polyadenylate-binding 99.3 1.6E-11 3.4E-16 127.3 10.3 131 261-419 17-157 (369)
34 KOG0113 U1 small nuclear ribon 99.3 3.2E-11 7E-16 118.9 10.9 83 329-412 92-178 (335)
35 KOG0109 RNA-binding protein LA 99.2 1.5E-11 3.2E-16 120.9 8.4 78 335-417 75-152 (346)
36 TIGR01645 half-pint poly-U bin 99.2 1.8E-11 3.8E-16 133.4 9.8 77 337-414 106-186 (612)
37 PLN03121 nucleic acid binding 99.2 4.2E-11 9E-16 116.2 10.4 76 337-414 4-80 (243)
38 KOG0107 Alternative splicing f 99.2 2.1E-11 4.6E-16 112.4 8.0 78 337-416 9-86 (195)
39 KOG0122 Translation initiation 99.2 2.8E-11 6.1E-16 116.6 8.9 78 337-415 188-269 (270)
40 KOG0145 RNA-binding protein EL 99.2 1E-10 2.2E-15 113.7 12.1 75 340-415 280-358 (360)
41 KOG0148 Apoptosis-promoting RN 99.2 2.3E-11 5E-16 118.6 6.9 80 337-417 61-144 (321)
42 smart00360 RRM RNA recognition 99.2 1E-10 2.3E-15 88.6 7.8 67 343-410 1-71 (71)
43 KOG0131 Splicing factor 3b, su 99.2 9.8E-11 2.1E-15 108.6 8.6 118 301-419 45-181 (203)
44 KOG4207 Predicted splicing fac 99.2 4.5E-11 9.7E-16 112.8 6.4 76 337-413 12-91 (256)
45 KOG0124 Polypyrimidine tract-b 99.1 1.2E-10 2.6E-15 117.4 9.1 114 301-415 149-290 (544)
46 PF13893 RRM_5: RNA recognitio 99.1 2E-10 4.4E-15 86.9 8.0 56 356-412 1-56 (56)
47 COG0724 RNA-binding proteins ( 99.1 2E-10 4.4E-15 108.0 9.8 75 338-413 115-193 (306)
48 cd00590 RRM RRM (RNA recogniti 99.1 3.6E-10 7.7E-15 86.5 9.4 71 340-411 1-74 (74)
49 TIGR01622 SF-CC1 splicing fact 99.1 2E-10 4.2E-15 121.2 10.4 77 337-415 88-168 (457)
50 KOG0146 RNA-binding protein ET 99.1 1.9E-10 4.1E-15 112.1 6.9 100 336-436 17-122 (371)
51 KOG4205 RNA-binding protein mu 99.0 1.2E-10 2.7E-15 117.7 3.9 81 337-419 5-89 (311)
52 KOG0131 Splicing factor 3b, su 99.0 3.1E-10 6.6E-15 105.4 5.7 77 337-414 8-88 (203)
53 KOG0123 Polyadenylate-binding 99.0 8.8E-10 1.9E-14 114.3 9.5 135 260-419 185-353 (369)
54 KOG0132 RNA polymerase II C-te 99.0 6.7E-10 1.5E-14 120.6 7.8 80 337-419 420-499 (894)
55 KOG0144 RNA-binding protein CU 99.0 8.5E-10 1.8E-14 113.4 8.1 82 336-418 32-120 (510)
56 KOG0126 Predicted RNA-binding 99.0 1.3E-10 2.8E-15 107.9 0.7 75 337-412 34-112 (219)
57 KOG0121 Nuclear cap-binding pr 99.0 1.4E-09 3.1E-14 96.0 6.7 76 337-413 35-114 (153)
58 smart00361 RRM_1 RNA recogniti 98.9 2.7E-09 5.9E-14 84.8 7.6 57 353-409 2-69 (70)
59 KOG0110 RNA-binding protein (R 98.9 2.5E-09 5.4E-14 115.5 9.0 113 305-418 558-696 (725)
60 KOG0108 mRNA cleavage and poly 98.9 2.8E-09 6.1E-14 112.2 8.9 78 339-417 19-100 (435)
61 KOG0114 Predicted RNA-binding 98.9 7.5E-09 1.6E-13 88.4 8.8 80 337-417 17-97 (124)
62 KOG0109 RNA-binding protein LA 98.9 3E-09 6.4E-14 105.0 5.8 77 339-420 3-79 (346)
63 KOG0105 Alternative splicing f 98.8 5.8E-09 1.3E-13 97.2 6.3 78 337-415 5-83 (241)
64 KOG0124 Polypyrimidine tract-b 98.8 3.7E-09 8E-14 106.8 4.4 74 338-412 113-190 (544)
65 KOG0127 Nucleolar protein fibr 98.8 8E-09 1.7E-13 108.9 6.5 80 339-419 6-89 (678)
66 KOG0130 RNA-binding protein RB 98.8 8.1E-09 1.8E-13 92.0 5.4 76 340-416 74-153 (170)
67 KOG4212 RNA-binding protein hn 98.7 2.5E-08 5.4E-13 102.9 8.2 78 335-413 41-122 (608)
68 KOG4206 Spliceosomal protein s 98.6 5.9E-08 1.3E-12 93.0 7.4 83 338-421 9-96 (221)
69 KOG0146 RNA-binding protein ET 98.5 1.3E-07 2.7E-12 92.7 4.7 83 334-417 281-367 (371)
70 KOG4661 Hsp27-ERE-TATA-binding 98.4 2.8E-07 6.1E-12 97.6 6.5 77 337-414 404-484 (940)
71 KOG0415 Predicted peptidyl pro 98.4 4E-07 8.7E-12 92.1 6.4 81 333-414 234-318 (479)
72 KOG0110 RNA-binding protein (R 98.3 1.2E-06 2.5E-11 95.3 8.0 73 340-413 517-596 (725)
73 KOG4208 Nucleolar RNA-binding 98.3 2E-06 4.4E-11 81.6 7.1 78 337-415 48-130 (214)
74 KOG4211 Splicing factor hnRNP- 98.2 4.1E-06 8.9E-11 88.0 9.8 111 301-413 43-180 (510)
75 KOG0116 RasGAP SH3 binding pro 98.2 2.4E-06 5.1E-11 89.9 7.7 74 339-414 289-366 (419)
76 KOG4212 RNA-binding protein hn 98.2 2.8E-06 6E-11 88.1 6.9 74 335-411 533-607 (608)
77 KOG4206 Spliceosomal protein s 98.2 1.5E-05 3.3E-10 76.7 11.1 77 335-413 143-220 (221)
78 KOG0151 Predicted splicing reg 98.2 3.3E-06 7.2E-11 91.7 7.2 79 335-414 171-256 (877)
79 KOG0106 Alternative splicing f 98.2 1.7E-06 3.6E-11 83.4 4.4 72 339-415 2-73 (216)
80 KOG0533 RRM motif-containing p 98.1 1.2E-05 2.6E-10 79.0 8.3 80 335-415 80-162 (243)
81 KOG4454 RNA binding protein (R 98.0 6E-06 1.3E-10 79.2 4.1 77 335-413 6-85 (267)
82 KOG4209 Splicing factor RNPS1, 97.9 2.1E-05 4.4E-10 77.1 5.8 77 337-415 100-180 (231)
83 KOG0106 Alternative splicing f 97.9 1.5E-05 3.3E-10 76.9 4.6 72 337-413 98-169 (216)
84 KOG0226 RNA-binding proteins [ 97.7 2.7E-05 5.8E-10 76.2 4.1 76 337-413 189-268 (290)
85 PF00642 zf-CCCH: Zinc finger 97.7 6.8E-06 1.5E-10 53.9 -0.4 23 183-205 3-26 (27)
86 KOG1548 Transcription elongati 97.7 0.00012 2.5E-09 74.4 7.8 76 337-413 133-219 (382)
87 KOG0149 Predicted RNA-binding 97.7 4.1E-05 8.8E-10 74.2 4.1 48 253-323 15-72 (247)
88 KOG0105 Alternative splicing f 97.7 0.00046 1E-08 65.0 10.9 69 338-410 115-185 (241)
89 KOG1457 RNA binding protein (c 97.6 0.00021 4.5E-09 69.0 8.5 85 337-422 33-125 (284)
90 KOG4660 Protein Mei2, essentia 97.6 4.2E-05 9.2E-10 81.6 4.2 72 335-408 72-143 (549)
91 KOG4210 Nuclear localization s 97.5 8.1E-05 1.8E-09 75.0 4.3 80 337-418 183-267 (285)
92 KOG4211 Splicing factor hnRNP- 97.5 0.00023 5E-09 75.2 7.4 77 338-417 10-88 (510)
93 KOG1190 Polypyrimidine tract-b 97.5 0.0004 8.6E-09 72.0 8.4 76 338-414 297-372 (492)
94 smart00356 ZnF_C3H1 zinc finge 97.4 8.6E-05 1.9E-09 47.9 1.7 22 184-205 5-26 (27)
95 KOG2135 Proteins containing th 97.4 0.00022 4.8E-09 74.9 5.3 62 352-416 386-447 (526)
96 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0013 2.9E-08 49.8 5.2 52 339-394 2-53 (53)
97 PF04059 RRM_2: RNA recognitio 96.9 0.0046 1E-07 52.8 8.1 78 339-417 2-89 (97)
98 PF11608 Limkain-b1: Limkain b 96.8 0.0038 8.1E-08 52.0 6.6 71 339-416 3-78 (90)
99 PF08777 RRM_3: RNA binding mo 96.8 0.0018 3.9E-08 55.9 4.6 71 340-413 3-78 (105)
100 KOG0128 RNA-binding protein SA 96.7 0.00095 2.1E-08 74.5 2.9 107 301-414 703-814 (881)
101 KOG0112 Large RNA-binding prot 96.6 0.0043 9.2E-08 69.8 7.3 103 336-444 453-557 (975)
102 COG5175 MOT2 Transcriptional r 96.6 0.0039 8.4E-08 63.4 6.4 78 337-415 113-203 (480)
103 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.008 1.7E-07 51.6 7.3 60 352-414 18-91 (100)
104 PF14608 zf-CCCH_2: Zinc finge 96.6 0.0011 2.4E-08 40.0 1.4 19 185-205 1-19 (19)
105 KOG0129 Predicted RNA-binding 96.6 0.007 1.5E-07 64.6 8.3 80 336-417 368-456 (520)
106 KOG0147 Transcriptional coacti 96.6 0.001 2.2E-08 71.1 2.2 77 337-415 178-258 (549)
107 KOG0120 Splicing factor U2AF, 96.4 0.0025 5.4E-08 68.5 3.9 80 337-417 288-371 (500)
108 KOG1855 Predicted RNA-binding 96.3 0.0018 3.9E-08 67.6 1.6 62 336-398 229-307 (484)
109 KOG1548 Transcription elongati 96.2 0.016 3.5E-07 59.3 8.1 79 337-415 264-352 (382)
110 KOG0120 Splicing factor U2AF, 96.2 0.011 2.4E-07 63.6 7.0 62 354-415 424-492 (500)
111 KOG1995 Conserved Zn-finger pr 96.0 0.0058 1.3E-07 62.6 3.8 83 336-419 64-158 (351)
112 KOG0129 Predicted RNA-binding 95.9 0.015 3.3E-07 62.1 6.2 58 337-396 258-325 (520)
113 KOG3152 TBP-binding protein, a 95.7 0.0059 1.3E-07 60.2 2.3 69 337-406 73-157 (278)
114 PF08952 DUF1866: Domain of un 95.7 0.054 1.2E-06 49.5 8.3 76 333-414 22-106 (146)
115 KOG1365 RNA-binding protein Fu 95.6 0.019 4.2E-07 59.4 5.7 76 338-414 280-361 (508)
116 KOG1457 RNA binding protein (c 95.6 0.012 2.6E-07 57.1 3.9 65 337-402 209-273 (284)
117 KOG2185 Predicted RNA-processi 95.4 0.0059 1.3E-07 63.5 1.0 24 182-205 139-162 (486)
118 COG0724 RNA-binding proteins ( 95.3 0.053 1.1E-06 50.8 7.0 99 252-374 117-260 (306)
119 KOG0125 Ataxin 2-binding prote 95.0 0.021 4.4E-07 58.2 3.6 38 262-324 116-155 (376)
120 KOG1190 Polypyrimidine tract-b 94.9 0.053 1.2E-06 56.7 6.4 78 335-413 411-489 (492)
121 KOG4207 Predicted splicing fac 94.9 0.018 3.9E-07 55.4 2.6 39 262-323 33-73 (256)
122 PLN03134 glycine-rich RNA-bind 94.8 0.03 6.5E-07 50.9 3.8 39 262-323 54-94 (144)
123 KOG2314 Translation initiation 94.8 0.037 8E-07 59.8 5.0 59 355-413 80-142 (698)
124 PF00658 PABP: Poly-adenylate 94.8 0.02 4.4E-07 46.3 2.3 49 8-57 22-71 (72)
125 smart00517 PolyA C-terminal do 94.6 0.035 7.6E-07 43.9 3.3 50 8-58 11-61 (64)
126 KOG1677 CCCH-type Zn-finger pr 94.2 0.021 4.6E-07 58.3 1.5 27 179-205 173-200 (332)
127 KOG1456 Heterogeneous nuclear 94.0 0.23 4.9E-06 51.6 8.4 77 337-414 286-362 (494)
128 KOG2202 U2 snRNP splicing fact 93.8 0.031 6.8E-07 55.1 1.8 60 354-413 83-146 (260)
129 KOG0113 U1 small nuclear ribon 93.6 0.092 2E-06 53.0 4.6 35 262-319 121-155 (335)
130 PF10309 DUF2414: Protein of u 93.5 0.41 8.9E-06 37.7 7.1 55 338-397 5-62 (62)
131 KOG4849 mRNA cleavage factor I 92.9 0.11 2.4E-06 53.4 4.1 75 338-413 80-160 (498)
132 KOG0122 Translation initiation 92.6 0.13 2.9E-06 50.6 4.0 30 291-324 219-250 (270)
133 KOG1456 Heterogeneous nuclear 92.3 0.41 8.9E-06 49.8 7.3 70 348-419 131-203 (494)
134 KOG1996 mRNA splicing factor [ 92.3 0.33 7.2E-06 49.0 6.5 62 353-414 300-366 (378)
135 KOG0126 Predicted RNA-binding 92.1 0.097 2.1E-06 49.5 2.3 44 253-319 38-89 (219)
136 KOG4307 RNA binding protein RB 91.9 0.6 1.3E-05 52.0 8.3 73 338-411 867-943 (944)
137 PF00076 RRM_1: RNA recognitio 91.5 0.21 4.5E-06 37.9 3.3 38 262-323 18-57 (70)
138 KOG2193 IGF-II mRNA-binding pr 91.3 0.2 4.4E-06 52.7 3.8 81 339-422 2-83 (584)
139 KOG4285 Mitotic phosphoprotein 91.3 0.46 9.9E-06 48.2 6.1 61 353-416 210-271 (350)
140 KOG1365 RNA-binding protein Fu 91.2 0.14 3.1E-06 53.2 2.5 70 340-411 163-239 (508)
141 KOG1039 Predicted E3 ubiquitin 91.0 0.083 1.8E-06 54.7 0.7 24 184-208 9-32 (344)
142 KOG4307 RNA binding protein RB 90.8 0.15 3.2E-06 56.6 2.4 80 336-416 432-515 (944)
143 KOG0112 Large RNA-binding prot 90.6 0.058 1.3E-06 61.1 -0.9 78 337-415 371-451 (975)
144 PF04847 Calcipressin: Calcipr 90.0 1 2.3E-05 42.8 7.1 62 352-415 8-71 (184)
145 PF10650 zf-C3H1: Putative zin 89.8 0.18 4E-06 31.9 1.3 19 185-204 2-21 (23)
146 KOG4676 Splicing factor, argin 89.3 0.69 1.5E-05 48.4 5.7 73 339-413 8-87 (479)
147 KOG0128 RNA-binding protein SA 89.1 0.056 1.2E-06 60.9 -2.5 71 338-409 667-741 (881)
148 smart00361 RRM_1 RNA recogniti 89.0 0.67 1.5E-05 36.4 4.3 22 303-324 33-56 (70)
149 KOG0115 RNA-binding protein p5 88.9 0.27 5.8E-06 48.8 2.4 74 339-413 32-112 (275)
150 KOG2494 C3H1-type Zn-finger pr 87.9 0.16 3.5E-06 51.9 0.1 23 183-205 37-60 (331)
151 KOG2068 MOT2 transcription fac 87.2 0.34 7.4E-06 49.6 2.0 79 338-417 77-165 (327)
152 KOG2416 Acinus (induces apopto 87.1 0.91 2E-05 49.8 5.1 77 334-413 440-520 (718)
153 KOG1595 CCCH-type Zn-finger pr 86.8 0.31 6.6E-06 52.8 1.4 24 182-205 235-258 (528)
154 PLN03120 nucleic acid binding 85.5 0.83 1.8E-05 45.7 3.6 37 262-324 24-62 (260)
155 PF15023 DUF4523: Protein of u 85.2 3.7 8.1E-05 37.7 7.3 73 335-412 83-159 (166)
156 PF08675 RNA_bind: RNA binding 85.1 3.6 7.9E-05 34.4 6.6 56 337-398 8-63 (87)
157 KOG4454 RNA binding protein (R 84.8 1.1 2.4E-05 43.8 4.0 86 309-397 51-145 (267)
158 PF14259 RRM_6: RNA recognitio 84.1 1.1 2.4E-05 34.4 3.1 21 304-324 36-58 (70)
159 KOG0108 mRNA cleavage and poly 82.8 2.6 5.6E-05 45.3 6.2 39 262-323 38-78 (435)
160 smart00360 RRM RNA recognition 82.6 2 4.3E-05 31.4 3.9 39 262-323 16-56 (71)
161 KOG1763 Uncharacterized conser 81.8 0.51 1.1E-05 47.6 0.4 21 185-205 94-114 (343)
162 PF13893 RRM_5: RNA recognitio 80.3 2 4.3E-05 31.8 3.1 35 261-323 3-39 (56)
163 KOG4208 Nucleolar RNA-binding 79.1 2.1 4.5E-05 41.4 3.5 15 301-315 86-100 (214)
164 COG5084 YTH1 Cleavage and poly 78.2 1 2.2E-05 45.6 1.3 23 183-205 134-157 (285)
165 PLN03121 nucleic acid binding 77.1 2.3 5.1E-05 42.1 3.4 37 262-324 25-63 (243)
166 KOG1040 Polyadenylation factor 76.5 1.1 2.3E-05 46.3 0.9 26 180-205 74-99 (325)
167 KOG1492 C3H1-type Zn-finger pr 76.3 1.1 2.3E-05 43.7 0.8 21 185-205 208-229 (377)
168 KOG1040 Polyadenylation factor 75.1 1.5 3.2E-05 45.3 1.4 23 183-205 105-128 (325)
169 KOG0114 Predicted RNA-binding 74.2 3.4 7.5E-05 36.1 3.2 46 253-324 21-76 (124)
170 COG5152 Uncharacterized conser 73.9 1.3 2.8E-05 42.6 0.6 24 182-205 140-164 (259)
171 KOG1677 CCCH-type Zn-finger pr 73.4 1.6 3.4E-05 44.6 1.2 26 180-205 129-156 (332)
172 PLN03213 repressor of silencin 72.5 3.9 8.5E-05 44.2 3.8 35 262-323 30-68 (759)
173 smart00362 RRM_2 RNA recogniti 72.1 5.9 0.00013 29.0 3.8 20 304-323 36-57 (72)
174 KOG0111 Cyclophilin-type pepti 71.9 3.5 7.6E-05 40.4 3.0 40 262-324 30-71 (298)
175 PF07576 BRAP2: BRCA1-associat 67.6 35 0.00077 29.8 8.2 64 340-404 15-81 (110)
176 PF03880 DbpA: DbpA RNA bindin 67.5 21 0.00045 28.5 6.3 60 348-412 10-74 (74)
177 KOG4210 Nuclear localization s 64.2 4.1 9E-05 41.3 1.9 79 337-416 87-169 (285)
178 PF11767 SET_assoc: Histone ly 63.8 39 0.00085 26.9 7.0 56 349-409 10-65 (66)
179 KOG2591 c-Mpl binding protein, 63.6 9.2 0.0002 42.0 4.4 69 337-408 173-245 (684)
180 KOG1813 Predicted E3 ubiquitin 60.6 2.9 6.3E-05 42.4 0.1 24 182-205 185-209 (313)
181 KOG2253 U1 snRNP complex, subu 60.1 8.5 0.00018 42.9 3.5 73 334-412 36-108 (668)
182 KOG4574 RNA-binding protein (c 58.7 7.1 0.00015 44.8 2.7 77 337-416 297-375 (1007)
183 KOG1492 C3H1-type Zn-finger pr 58.2 3.9 8.4E-05 40.0 0.5 22 183-205 261-282 (377)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 55.9 13 0.00027 35.1 3.5 65 338-403 7-81 (176)
185 KOG2494 C3H1-type Zn-finger pr 54.0 6 0.00013 40.7 1.1 23 182-205 70-92 (331)
186 COG5084 YTH1 Cleavage and poly 48.1 9.1 0.0002 38.9 1.3 24 182-205 103-126 (285)
187 KOG0121 Nuclear cap-binding pr 47.1 29 0.00062 31.6 4.1 24 301-324 72-97 (153)
188 COG5252 Uncharacterized conser 46.1 7.3 0.00016 38.5 0.3 21 185-205 87-107 (299)
189 KOG2891 Surface glycoprotein [ 46.0 17 0.00037 36.8 2.8 37 336-373 147-195 (445)
190 KOG0804 Cytoplasmic Zn-finger 45.1 48 0.001 35.8 6.0 66 338-404 74-142 (493)
191 PF15513 DUF4651: Domain of un 42.9 32 0.00069 27.2 3.3 20 354-373 9-28 (62)
192 KOG0132 RNA polymerase II C-te 41.2 43 0.00093 38.4 5.2 83 306-410 456-540 (894)
193 COG5063 CTH1 CCCH-type Zn-fing 39.2 14 0.00031 37.8 1.1 26 180-205 271-297 (351)
194 KOG2202 U2 snRNP splicing fact 37.0 16 0.00035 36.5 1.0 25 181-205 150-174 (260)
195 KOG0107 Alternative splicing f 34.6 28 0.00061 33.1 2.2 19 305-323 45-65 (195)
196 KOG4661 Hsp27-ERE-TATA-binding 33.2 37 0.00081 37.6 3.1 29 33-61 41-70 (940)
197 PF02714 DUF221: Domain of unk 32.6 40 0.00087 34.0 3.2 35 380-416 1-35 (325)
198 KOG0793 Protein tyrosine phosp 31.4 54 0.0012 37.4 4.0 90 33-143 634-729 (1004)
199 PF07292 NID: Nmi/IFP 35 domai 30.8 67 0.0015 27.0 3.6 31 380-410 1-32 (88)
200 KOG4676 Splicing factor, argin 29.7 11 0.00025 39.7 -1.4 80 338-419 151-230 (479)
201 KOG0415 Predicted peptidyl pro 26.2 60 0.0013 34.1 3.1 37 262-321 259-297 (479)
202 KOG1039 Predicted E3 ubiquitin 24.0 39 0.00084 35.4 1.3 26 180-205 246-273 (344)
203 PF03002 Somatostatin: Somatos 23.6 38 0.00082 20.3 0.6 11 183-193 4-15 (18)
204 KOG4019 Calcineurin-mediated s 22.8 1.1E+02 0.0025 29.2 4.0 59 355-415 31-90 (193)
205 KOG2333 Uncharacterized conser 21.7 70 0.0015 35.1 2.7 22 184-205 115-137 (614)
206 KOG4791 Uncharacterized conser 21.1 31 0.00067 37.4 -0.1 23 183-205 118-140 (667)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.78 E-value=1.9e-18 Score=177.25 Aligned_cols=134 Identities=20% Similarity=0.267 Sum_probs=108.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCC-CC--------
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNER-SD-------- 330 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r-~d-------- 330 (455)
+|++||+|++++ +++| +.+++++||+||.|. ++|.+|+..-... ..
T Consensus 127 lF~~~G~V~~v~-------------------i~~d----~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 127 LFRTIGPINTCR-------------------IMRD----YKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred HHHhcCCEEEEE-------------------EEec----CCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 589999998876 5666 567899999999996 5777887531111 10
Q ss_pred --CCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 331 --PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 331 --~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
........++|||++ |+..+||++|+++|++||+|+.|+|+.| ++||||||+|++.++|++||+.+|++.+.|
T Consensus 184 a~p~~~~~~~~~lfV~n-Lp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g 262 (346)
T TIGR01659 184 ARPGGESIKDTNLYVTN-LPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEG 262 (346)
T ss_pred ccccccccccceeEEeC-CCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 011122467899999 8999999999999999999999999987 478999999999999999999999999876
Q ss_pred --eEEEEEecccCccch
Q 012831 405 --ARVLVKPYREKSKLV 419 (455)
Q Consensus 405 --r~v~Vk~a~~k~k~~ 419 (455)
+.|.|++++++.+..
T Consensus 263 ~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 263 GSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CceeEEEEECCcccccc
Confidence 689999998876543
No 2
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=9.2e-19 Score=178.29 Aligned_cols=138 Identities=20% Similarity=0.363 Sum_probs=111.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCC-CCCC----
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSD-PGPI---- 334 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d-~~~~---- 334 (455)
+||+||.|.++. +.|| |.|+.++|++||+|. +|+.+++..-.+... ++..
T Consensus 54 lFe~yg~V~ein-------------------l~kD----k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 54 LFEKYGNVYEIN-------------------LIKD----KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred HHHHhCceeEEE-------------------eecc----cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 399999999876 6777 678999999999994 677777664322211 1111
Q ss_pred ----------CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCC-e
Q 012831 335 ----------VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNP-H 400 (455)
Q Consensus 335 ----------~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~-~ 400 (455)
....+|||||. |+..+||.+|+++|++||.|++|+|++| .+||||||+|.+.|.|..||+.||+ +
T Consensus 111 vk~Ad~E~er~~~e~KLFvg~-lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 111 VKYADGERERIVEERKLFVGM-LSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ecccchhhhccccchhhhhhh-ccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 12478999999 9999999999999999999999999997 6999999999999999999999984 4
Q ss_pred eE--cCeEEEEEecccCccchhHHH
Q 012831 401 FV--CGARVLVKPYREKSKLVDRKY 423 (455)
Q Consensus 401 ~I--~Gr~v~Vk~a~~k~k~~~~~~ 423 (455)
.+ |..++.||||.+++.+.-++.
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~l 214 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRL 214 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHH
Confidence 45 457999999999876655544
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=2.8e-17 Score=166.84 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=73.7
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
+|||+| |++++++++|+++|++||.|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|.|.++..|
T Consensus 271 ~lfV~N-L~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 271 CIFVYN-LSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred EEEEeC-CCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 699999 8999999999999999999999999987 58999999999999999999999999999999999999988
Q ss_pred cc
Q 012831 416 SK 417 (455)
Q Consensus 416 ~k 417 (455)
.+
T Consensus 350 ~~ 351 (352)
T TIGR01661 350 AY 351 (352)
T ss_pred CC
Confidence 65
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.73 E-value=3.7e-17 Score=177.23 Aligned_cols=141 Identities=15% Similarity=0.252 Sum_probs=114.8
Q ss_pred CccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHH
Q 012831 252 PISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKY 321 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~ 321 (455)
.+.|.+||.. +|++||.|..+. +++| +.+++++||+||.|. ++|.++
T Consensus 109 rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~-------------------I~~D----~~TgkskGfAFVeF~s~e~A~~A 165 (612)
T TIGR01645 109 RVYVGSISFELREDTIRRAFDPFGPIKSIN-------------------MSWD----PATGKHKGFAFVEYEVPEAAQLA 165 (612)
T ss_pred EEEEcCCCCCCCHHHHHHHHHccCCEEEEE-------------------Eeec----CCCCCcCCeEEEEeCcHHHHHHH
Confidence 4678888864 899999998876 5566 567999999999996 677777
Q ss_pred HhhCCC--------CCCC-C-------------CCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----C
Q 012831 322 LENRNE--------RSDP-G-------------PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----Q 375 (455)
Q Consensus 322 ~~~r~~--------r~d~-~-------------~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k 375 (455)
+..-.. +... . ......++|||+| |+.++++++|+++|+.||+|++|+|++| +
T Consensus 166 i~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgn-Lp~~vteedLk~lFs~FG~I~svrl~~D~~tgk 244 (612)
T TIGR01645 166 LEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVAS-VHPDLSETDIKSVFEAFGEIVKCQLARAPTGRG 244 (612)
T ss_pred HHhcCCeEEecceeeecccccccccccccccccccccccceEEeec-CCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC
Confidence 753111 0000 0 0011346999999 8999999999999999999999999987 5
Q ss_pred CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCc
Q 012831 376 KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (455)
Q Consensus 376 ~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~ 416 (455)
+||||||+|.+.++|++|++.||+..|+|+.|+|.++.++.
T Consensus 245 sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 89999999999999999999999999999999999998654
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.8e-17 Score=160.72 Aligned_cols=133 Identities=21% Similarity=0.323 Sum_probs=110.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh--------CCCCCC-
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN--------RNERSD- 330 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~--------r~~r~d- 330 (455)
-|.+||+|.+++ +.|| ..|++++|||||.|. +||+.++.. |.-|..
T Consensus 82 aF~pFGevS~ak-------------------virD----~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 82 AFAPFGEVSDAK-------------------VIRD----MNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred Hhccccccccce-------------------Eeec----ccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 589999999987 7888 567999999999994 688877653 211111
Q ss_pred ------------------CCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHH
Q 012831 331 ------------------PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKM 392 (455)
Q Consensus 331 ------------------~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~ 392 (455)
.....+.++++|||+ +..-+||+++|+.|++||+|.+|||-. -+||+||.|++.|.|.+
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~-I~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGN-IASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAH 215 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCC-cCccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHH
Confidence 112345788999999 677899999999999999999999998 56999999999999999
Q ss_pred HHHhcCCeeEcCeEEEEEecccCccchh
Q 012831 393 ILAKGNPHFVCGARVLVKPYREKSKLVD 420 (455)
Q Consensus 393 Al~~ln~~~I~Gr~v~Vk~a~~k~k~~~ 420 (455)
||..+|+.+|.|..|++.|.++......
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCCCCCC
Confidence 9999999999999999999997654443
No 6
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.70 E-value=2.3e-17 Score=166.10 Aligned_cols=134 Identities=28% Similarity=0.404 Sum_probs=111.3
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEccc--cHHHHHhhCCCCCCCC-----C-
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAE--DAPKYLENRNERSDPG-----P- 333 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~e--da~k~~~~r~~r~d~~-----~- 333 (455)
||.+||+|.++. +|+| +.++|+|||+||+|++ .+...+..+.+..+.. .
T Consensus 26 yf~~~Gev~d~~-------------------vm~d----~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 26 YFSQFGEVTDCV-------------------VMRD----PSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRA 82 (311)
T ss_pred HhcccCceeeEE-------------------Eecc----CCCCCcccccceecCCCcchheeecccccccCCccccceec
Confidence 899999998865 8998 5679999999999973 3444554444433311 1
Q ss_pred ----------CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCC
Q 012831 334 ----------IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNP 399 (455)
Q Consensus 334 ----------~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~ 399 (455)
.....+|||||+ ++..++|+++++||++||.|.++.+++| +.||||||+|.+++.+++++.. ..
T Consensus 83 v~r~~~~~~~~~~~tkkiFvGG-~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f 160 (311)
T KOG4205|consen 83 VSREDQTKVGRHLRTKKIFVGG-LPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KF 160 (311)
T ss_pred cCcccccccccccceeEEEecC-cCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ce
Confidence 112467999999 8999999999999999999999999998 5899999999999999999988 89
Q ss_pred eeEcCeEEEEEecccCccchh
Q 012831 400 HFVCGARVLVKPYREKSKLVD 420 (455)
Q Consensus 400 ~~I~Gr~v~Vk~a~~k~k~~~ 420 (455)
|.|+|+.|+|+.|.||.....
T Consensus 161 ~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred eeecCceeeEeeccchhhccc
Confidence 999999999999999876543
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.70 E-value=1.7e-16 Score=167.10 Aligned_cols=139 Identities=21% Similarity=0.291 Sum_probs=112.3
Q ss_pred Cccccccch--------HHHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHH
Q 012831 252 PISIASLPM--------LYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKY 321 (455)
Q Consensus 252 p~~i~~lP~--------~yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~ 321 (455)
.+.|.+||. .+|++||+|.++. ++++ +.+++++||+||.|. ++|.++
T Consensus 91 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~-------------------i~~d----~~~~~skg~afVeF~~~e~A~~A 147 (457)
T TIGR01622 91 TVFVLQLALKARERDLYEFFSKVGKVRDVQ-------------------CIKD----RNSRRSKGVAYVEFYDVESVIKA 147 (457)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-------------------Eeec----CCCCCcceEEEEEECCHHHHHHH
Confidence 345555553 3799999998876 4555 467899999999996 688888
Q ss_pred HhhCCCCCC----------------------CCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----C
Q 012831 322 LENRNERSD----------------------PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----Q 375 (455)
Q Consensus 322 ~~~r~~r~d----------------------~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k 375 (455)
+...+.... .....+..++|||+| |+..+|+++|+++|++||.|..|.|+.+ +
T Consensus 148 l~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~n-l~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~ 226 (457)
T TIGR01622 148 LALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGN-LHFNITEQELRQIFEPFGDIEDVQLHRDPETGR 226 (457)
T ss_pred HHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcC-CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc
Confidence 864322110 001123468999999 8999999999999999999999999976 5
Q ss_pred CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 376 KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 376 ~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
++|||||+|.+.++|++|++.||+..|.|+.|.|.++..
T Consensus 227 ~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 227 SKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred cceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 789999999999999999999999999999999999763
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.68 E-value=2.8e-16 Score=170.09 Aligned_cols=136 Identities=20% Similarity=0.344 Sum_probs=108.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCC-CC--------
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNER-SD-------- 330 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r-~d-------- 330 (455)
+|++||+|..+. ++++ .+++++||+||.|. ++|.+++..-... ..
T Consensus 198 ~F~~fG~i~~~~-------------------i~~~-----~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 198 LFAKFGEITSAA-------------------VMKD-----GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred HHHhcCCEEEEE-------------------EEEC-----CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 689999998765 4444 24788999999996 5777776531111 00
Q ss_pred -CC-----------------------CCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEE
Q 012831 331 -PG-----------------------PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVT 383 (455)
Q Consensus 331 -~~-----------------------~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVt 383 (455)
.. .......+|||+| |+.++|+++|+++|++||.|++|+|+.| ++||||||+
T Consensus 254 ~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~n-l~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~ 332 (562)
T TIGR01628 254 YVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKN-LDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVC 332 (562)
T ss_pred EeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeC-CCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEE
Confidence 00 0022456899999 8999999999999999999999999987 589999999
Q ss_pred ECCHHHHHHHHHhcCCeeEcCeEEEEEecccCccchhHH
Q 012831 384 FASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRK 422 (455)
Q Consensus 384 F~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k~~~~~ 422 (455)
|.+.++|++|+..+|+..++|+.|.|.+|..|.......
T Consensus 333 f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~ 371 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHL 371 (562)
T ss_pred eCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHH
Confidence 999999999999999999999999999999887655443
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.67 E-value=4.3e-16 Score=158.16 Aligned_cols=131 Identities=21% Similarity=0.308 Sum_probs=107.0
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCC-CCC--------
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNE-RSD-------- 330 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~-r~d-------- 330 (455)
+|++||+|.++. ++++ +.+++++|||||.|. ++|.+++..... ...
T Consensus 23 ~F~~~G~i~~v~-------------------i~~d----~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 23 LFTSIGEIESCK-------------------LVRD----KVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSY 79 (352)
T ss_pred HHHccCCEEEEE-------------------EEEc----CCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEe
Confidence 699999999877 6776 456899999999996 688888863211 111
Q ss_pred --CCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 331 --PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 331 --~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
.........+|||++ |+..+++++|+++|++||.|..++++.+ +++|||||+|++.++|++|++.+|+..+.|
T Consensus 80 a~~~~~~~~~~~l~v~~-l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 80 ARPSSDSIKGANLYVSG-LPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred ecccccccccceEEECC-ccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 011112456899999 8999999999999999999999999976 479999999999999999999999999877
Q ss_pred --eEEEEEecccCc
Q 012831 405 --ARVLVKPYREKS 416 (455)
Q Consensus 405 --r~v~Vk~a~~k~ 416 (455)
.+|.|+++..+.
T Consensus 159 ~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 159 CTEPITVKFANNPS 172 (352)
T ss_pred CceeEEEEECCCCC
Confidence 678899987655
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.65 E-value=1e-15 Score=165.71 Aligned_cols=133 Identities=20% Similarity=0.337 Sum_probs=109.3
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCC-CC-------C
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNER-SD-------P 331 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r-~d-------~ 331 (455)
+|.+||.|..+. +++| +.+++++||+||.|. ++|.+|+...... .. .
T Consensus 20 ~F~~~G~v~~v~-------------------v~~d----~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~ 76 (562)
T TIGR01628 20 LFKPFGPVLSVR-------------------VCRD----SVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMW 76 (562)
T ss_pred HHHhcCCEEEEE-------------------EEec----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeec
Confidence 689999998876 6777 567899999999996 5888888643222 10 1
Q ss_pred -----CCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEc
Q 012831 332 -----GPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVC 403 (455)
Q Consensus 332 -----~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~ 403 (455)
........+|||+| |+.++++++|+++|++||.|.+|+|+.+ ++||||||.|.+.++|++|++++|+..++
T Consensus 77 s~~~~~~~~~~~~~vfV~n-Lp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~ 155 (562)
T TIGR01628 77 SQRDPSLRRSGVGNIFVKN-LDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLN 155 (562)
T ss_pred ccccccccccCCCceEEcC-CCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEec
Confidence 11112345899999 8999999999999999999999999987 58999999999999999999999999999
Q ss_pred CeEEEEEecccCccc
Q 012831 404 GARVLVKPYREKSKL 418 (455)
Q Consensus 404 Gr~v~Vk~a~~k~k~ 418 (455)
|+.|.|....++...
T Consensus 156 ~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 156 DKEVYVGRFIKKHER 170 (562)
T ss_pred CceEEEecccccccc
Confidence 999999887765543
No 11
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=5.8e-16 Score=154.63 Aligned_cols=79 Identities=25% Similarity=0.367 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHh-cCCeeEcCeEEEEEecc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAK-GNPHFVCGARVLVKPYR 413 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~-ln~~~I~Gr~v~Vk~a~ 413 (455)
....++||||+ |...++|.+|+++|.+||+|+.|++.. .++||||+|.+.++|+.|.++ .|...|+|.+|.|+|..
T Consensus 225 D~~I~tLyIg~-l~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 225 DTSIKTLYIGG-LNDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ccceeEEEecc-cccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 34678999999 888999999999999999999999998 678999999999999999988 58999999999999999
Q ss_pred cCc
Q 012831 414 EKS 416 (455)
Q Consensus 414 ~k~ 416 (455)
+++
T Consensus 302 ~~~ 304 (377)
T KOG0153|consen 302 PKQ 304 (377)
T ss_pred Ccc
Confidence 943
No 12
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.63 E-value=2e-15 Score=136.85 Aligned_cols=82 Identities=17% Similarity=0.333 Sum_probs=76.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||++ |++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.+|++.|+|+.|+|++
T Consensus 32 ~~~~~lfVgn-L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 32 LMSTKLFIGG-LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3567999999 9999999999999999999999999976 5899999999999999999999999999999999999
Q ss_pred cccCccc
Q 012831 412 YREKSKL 418 (455)
Q Consensus 412 a~~k~k~ 418 (455)
+.++...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9877653
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=3.9e-14 Score=153.40 Aligned_cols=111 Identities=20% Similarity=0.253 Sum_probs=87.7
Q ss_pred cCCCccceeEEccc--cHHHHHhhCC-CC-------C--C---CC-----CCCCCcceEEEeCCCCCCCCHHHHHHHhhc
Q 012831 303 IDRPHGQHAVILAE--DAPKYLENRN-ER-------S--D---PG-----PIVTGSRQIYLTFPAESTFTEDDVSNYFNT 362 (455)
Q Consensus 303 tgrsrG~gfV~f~e--da~k~~~~r~-~r-------~--d---~~-----~~~~~~rkIfVg~~l~~~~teedLr~~Fs~ 362 (455)
.++++||+||.|.+ +|.+++..-. .+ . + .. ......++|||+| |++.+||++|+++|++
T Consensus 178 kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgN-L~~~~tee~L~~~F~~ 256 (578)
T TIGR01648 178 KKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRN-LMTTTTEEIIEKSFSE 256 (578)
T ss_pred cCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeC-CCCCCCHHHHHHHHHh
Confidence 45789999999974 4555543210 00 0 0 00 0112457899999 8999999999999999
Q ss_pred c--CCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCccc
Q 012831 363 Y--GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418 (455)
Q Consensus 363 f--G~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k~ 418 (455)
| |+|++|+++ ++||||+|++.++|++|++.||+..|+|+.|+|.|++++.+.
T Consensus 257 f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 257 FKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred cCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 9 999999875 579999999999999999999999999999999999986543
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=7.6e-14 Score=143.24 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=90.8
Q ss_pred cCCCccceeEEccccHHHHHhhCCCCC------------CCCC--------CCCCcceEEEeCCCCCCCCHHHHHHHhhc
Q 012831 303 IDRPHGQHAVILAEDAPKYLENRNERS------------DPGP--------IVTGSRQIYLTFPAESTFTEDDVSNYFNT 362 (455)
Q Consensus 303 tgrsrG~gfV~f~eda~k~~~~r~~r~------------d~~~--------~~~~~rkIfVg~~l~~~~teedLr~~Fs~ 362 (455)
..+.|||+||.+.+.+-.++.+|.-.. +... .-.+-+-|||.| |+.++|||.|++.|++
T Consensus 204 k~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRN-L~~~tTeE~lk~~F~~ 282 (506)
T KOG0117|consen 204 KTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRN-LMESTTEETLKKLFNE 282 (506)
T ss_pred cccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeec-cchhhhHHHHHHHHHh
Confidence 467899999999776554544332111 1110 112567899999 8999999999999999
Q ss_pred cCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCccchh
Q 012831 363 YGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD 420 (455)
Q Consensus 363 fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k~~~ 420 (455)
||.|+.|+.++| ||||.|.++++|-+|++.+|+..|+|..|+|..|+|..+...
T Consensus 283 ~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 283 FGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred ccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 999999998764 999999999999999999999999999999999998654433
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.5e-14 Score=138.46 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=70.2
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..+|||||| |+|+++.+.|++||++||+|+++.|+.| |+||||||||.+.|+|.+|++. ....|+||+..|+.|
T Consensus 11 ~~TKifVgg-L~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGG-LAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcC-cccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 457999999 9999999999999999999999999988 7999999999999999999998 688899999999876
Q ss_pred c
Q 012831 413 R 413 (455)
Q Consensus 413 ~ 413 (455)
-
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=6.9e-14 Score=146.30 Aligned_cols=135 Identities=21% Similarity=0.285 Sum_probs=105.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCC--------CCCC
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNE--------RSDP 331 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~--------r~d~ 331 (455)
+|+.+|.|..+. +..+ +.+++.||||||+|+ ||+.+++..... +.+.
T Consensus 25 ~FS~vGPik~~~-------------------vVt~----~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~ 81 (678)
T KOG0127|consen 25 FFSYVGPIKHAV-------------------VVTN----KGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDP 81 (678)
T ss_pred hhhcccCcceeE-------------------EecC----CCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccc
Confidence 677788776654 3333 456889999999996 777766643111 1110
Q ss_pred ------------C----------C-------CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCe
Q 012831 332 ------------G----------P-------IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMF 379 (455)
Q Consensus 332 ------------~----------~-------~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGf 379 (455)
+ . .....-+|.|.| |||.+...+|+.+|+.||.|.+|.||.. +-.||
T Consensus 82 A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRN-LPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGF 160 (678)
T KOG0127|consen 82 AKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRN-LPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGF 160 (678)
T ss_pred ccccccchhcccccchhhhcccccCCcchhhccCccceEEeec-CCcccCcHHHHHHHhhcceEEEEEcccCCCCCccce
Confidence 0 0 000134789999 9999999999999999999999999975 45699
Q ss_pred EEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCccchh
Q 012831 380 GFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD 420 (455)
Q Consensus 380 aFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k~~~ 420 (455)
|||+|....+|..|++.+|++.|+||.|.|.||.+|.....
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 99999999999999999999999999999999999876554
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.50 E-value=1.9e-13 Score=145.73 Aligned_cols=77 Identities=12% Similarity=0.216 Sum_probs=72.3
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
.++|||+| |+..+|+++|+++|++||.|..+.|+.+ +++|||||+|.+.++|+.|++.||+..|.|+.|.|+++.
T Consensus 295 ~~~l~v~n-lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 295 KDRIYIGN-LPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 57999999 8999999999999999999999999876 479999999999999999999999999999999999986
Q ss_pred cC
Q 012831 414 EK 415 (455)
Q Consensus 414 ~k 415 (455)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 54
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.48 E-value=2.8e-13 Score=146.78 Aligned_cols=132 Identities=19% Similarity=0.222 Sum_probs=101.3
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCC-CCCC-----C
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNER-SDPG-----P 333 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r-~d~~-----~ 333 (455)
.|++||.|.+++ +++| .+++++||+||+|. ++|.+++..-... ...+ .
T Consensus 78 ~F~~~G~I~~vr-------------------l~~D-----~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 78 LFEKAGPIYELR-------------------LMMD-----FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred HHHhhCCEEEEE-------------------EEEC-----CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 699999998876 6666 46899999999996 6888887642211 1111 1
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCC-ceeEEeec---c--CCCCeEEEEECCHHHHHHHHHhcC--CeeEcCe
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGP-VDDVRIPC---Q--QKRMFGFVTFASADTVKMILAKGN--PHFVCGA 405 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~-I~~V~I~~---d--k~RGfaFVtF~~~e~A~~Al~~ln--~~~I~Gr 405 (455)
.....++|||++ |+.++|+++|.+.|++++. |+++.+.. + ++||||||+|+++++|..|+.+++ ...+.|+
T Consensus 134 ~S~~~~rLFVgN-LP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr 212 (578)
T TIGR01648 134 ISVDNCRLFVGG-IPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH 212 (578)
T ss_pred ccccCceeEeec-CCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCc
Confidence 123468999999 8999999999999999975 44554432 1 579999999999999999998864 4568999
Q ss_pred EEEEEecccCccc
Q 012831 406 RVLVKPYREKSKL 418 (455)
Q Consensus 406 ~v~Vk~a~~k~k~ 418 (455)
.|.|.|+.++.+.
T Consensus 213 ~I~VdwA~p~~~~ 225 (578)
T TIGR01648 213 VIAVDWAEPEEEV 225 (578)
T ss_pred eEEEEeecccccc
Confidence 9999999887543
No 19
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.3e-13 Score=137.14 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=75.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
...++|+|.| +|+.+.|-||+..|++||+|.+|.|+++ -+||||||||++.++|++|-+++++..|.||+|+|..|.
T Consensus 94 ~~pkRLhVSN-IPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSN-IPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeec-CCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 3568999999 8999999999999999999999999987 489999999999999999999999999999999999999
Q ss_pred cCcc
Q 012831 414 EKSK 417 (455)
Q Consensus 414 ~k~k 417 (455)
.+-.
T Consensus 173 arV~ 176 (376)
T KOG0125|consen 173 ARVH 176 (376)
T ss_pred hhhc
Confidence 8743
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.7e-13 Score=131.25 Aligned_cols=131 Identities=19% Similarity=0.256 Sum_probs=107.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh-CCCCCCC-------
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN-RNERSDP------- 331 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~-r~~r~d~------- 331 (455)
.|..-|+|..|. +.|| +++|++-|||||.+. +||++++.. .+-|...
T Consensus 61 LF~SiGeiEScK-------------------LvRD----KitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 61 LFGSIGEIESCK-------------------LVRD----KITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred Hhhcccceeeee-------------------eeec----cccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 377778888766 7888 789999999999984 789999874 2222221
Q ss_pred ---CCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 332 ---GPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 332 ---~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
....-+...|||.+ ||.++|..+|+.+|++||.|..-+|..| .+||.|||.|+..++|+.||..+|++.-.|
T Consensus 118 ARPSs~~Ik~aNLYvSG-lPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g 196 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSG-LPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 196 (360)
T ss_pred ccCChhhhcccceEEec-CCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCC
Confidence 11112455899999 9999999999999999999999999987 489999999999999999999999998866
Q ss_pred --eEEEEEecccCc
Q 012831 405 --ARVLVKPYREKS 416 (455)
Q Consensus 405 --r~v~Vk~a~~k~ 416 (455)
.+|.||+|....
T Consensus 197 ~tepItVKFannPs 210 (360)
T KOG0145|consen 197 CTEPITVKFANNPS 210 (360)
T ss_pred CCCCeEEEecCCcc
Confidence 589999987543
No 21
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=3.2e-13 Score=104.75 Aligned_cols=67 Identities=18% Similarity=0.481 Sum_probs=63.7
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEE
Q 012831 341 IYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (455)
Q Consensus 341 IfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~ 408 (455)
|||+| ||.++|+++|+++|++||.|..+.++.+ +.+|||||+|.+.++|++|++.++++.++|+.|+
T Consensus 1 l~v~n-lp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGN-LPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEES-ETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcC-CCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999 8999999999999999999999999985 6789999999999999999999999999999875
No 22
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=9.3e-13 Score=140.72 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=69.2
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcC--eEEEEEecccC
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG--ARVLVKPYREK 415 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~G--r~v~Vk~a~~k 415 (455)
.+|||++ |++.+|+++|+++|+.||+|.+|.|++++.+|+|||+|.+.++|++|++.||+..|.| ..|+|.+++++
T Consensus 97 ~~v~v~n-l~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 97 LRVIVEN-PMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred EEEEEcC-CCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 3799999 8999999999999999999999999887667899999999999999999999999975 47888888764
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.41 E-value=6.9e-13 Score=136.35 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=74.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||++ |++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++|++.|+++.|.+++|+|.+
T Consensus 105 ~~~~~LfVgn-Lp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 105 NSGTNLIVNY-LPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 4578999999 9999999999999999999999999987 5789999999999999999999999999999999999
Q ss_pred cccCc
Q 012831 412 YREKS 416 (455)
Q Consensus 412 a~~k~ 416 (455)
+++..
T Consensus 184 a~p~~ 188 (346)
T TIGR01659 184 ARPGG 188 (346)
T ss_pred ccccc
Confidence 87643
No 24
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=8.9e-13 Score=129.40 Aligned_cols=75 Identities=17% Similarity=0.332 Sum_probs=70.6
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccC-CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ-KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk-~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
.++|||+| |++.+||++|+++|+.||+|++|+|+.++ .+|||||+|.++++|+.|+. +++..|.|+.|.|.++..
T Consensus 4 ~rtVfVgN-Ls~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSN-VSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999 89999999999999999999999999884 68999999999999999996 799999999999999864
No 25
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.8e-12 Score=133.23 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=113.0
Q ss_pred CCCccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHH
Q 012831 250 GNPISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAP 319 (455)
Q Consensus 250 ~~p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~ 319 (455)
|..+.|..+|-. .|++-|+|-+.+ +|+| +..|.+|||+||+|. ++|+
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elR-------------------LMmD----~~sG~nRGYAFVtf~~Ke~Aq 139 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELR-------------------LMMD----PFSGDNRGYAFVTFCTKEEAQ 139 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEE-------------------Eeec----ccCCCCcceEEEEeecHHHHH
Confidence 455677777754 688889998877 8888 788999999999995 6777
Q ss_pred HHHhhCCCC-CCCCC-----CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCce-eEEeecc-----CCCCeEEEEECCH
Q 012831 320 KYLENRNER-SDPGP-----IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVD-DVRIPCQ-----QKRMFGFVTFASA 387 (455)
Q Consensus 320 k~~~~r~~r-~d~~~-----~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~-~V~I~~d-----k~RGfaFVtF~~~ 387 (455)
+++..-... ...+. ..-.+++||||+ +|.+.++++|.+-|++-++-+ +|.+..+ |.||||||.|.++
T Consensus 140 ~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~-IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H 218 (506)
T KOG0117|consen 140 EAIKELNNYEIRPGKLLGVCVSVANCRLFIGN-IPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESH 218 (506)
T ss_pred HHHHHhhCccccCCCEeEEEEeeecceeEecc-CCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecc
Confidence 777642211 11122 233678999999 899999999999999998754 5544433 7899999999999
Q ss_pred HHHHHHHHhcC--CeeEcCeEEEEEecccCccch
Q 012831 388 DTVKMILAKGN--PHFVCGARVLVKPYREKSKLV 419 (455)
Q Consensus 388 e~A~~Al~~ln--~~~I~Gr~v~Vk~a~~k~k~~ 419 (455)
..|..|-.+|- ...+-|..+.|.||.|+....
T Consensus 219 ~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~d 252 (506)
T KOG0117|consen 219 RAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPD 252 (506)
T ss_pred hhHHHHHhhccCCceeecCCcceeeccCcccCCC
Confidence 99999988863 566789999999999987543
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.36 E-value=5.7e-12 Score=134.69 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=69.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCC--ceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeE------
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGP--VDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGAR------ 406 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~--I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~------ 406 (455)
.+++|||+| |+.++|+++|+++|++||. |..|++..+ .++|||||+|.+.++|.+||..||++.|.|+.
T Consensus 393 ps~~L~v~N-Lp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~ 471 (481)
T TIGR01649 393 PSATLHLSN-IPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYH 471 (481)
T ss_pred CCcEEEEec-CCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccce
Confidence 457999999 8999999999999999998 888888653 35799999999999999999999999999985
Q ss_pred EEEEecccC
Q 012831 407 VLVKPYREK 415 (455)
Q Consensus 407 v~Vk~a~~k 415 (455)
|+|..++++
T Consensus 472 lkv~fs~~~ 480 (481)
T TIGR01649 472 LKVSFSTSR 480 (481)
T ss_pred EEEEeccCC
Confidence 888888764
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.34 E-value=7.5e-12 Score=133.52 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=102.1
Q ss_pred CccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHH
Q 012831 252 PISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKY 321 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~ 321 (455)
.+.|.+||.. +|++||.|..+. +.++ ..+++++|||||.|. ++|.+|
T Consensus 297 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~-------------------~~~~----~~~g~~~g~afv~f~~~~~a~~A 353 (509)
T TIGR01642 297 RIYIGNLPLYLGEDQIKELLESFGDLKAFN-------------------LIKD----IATGLSKGYAFCEYKDPSVTDVA 353 (509)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-------------------EEec----CCCCCcCeEEEEEECCHHHHHHH
Confidence 4677888864 899999987765 3444 457889999999996 456666
Q ss_pred HhhCCC-CCC---------------------C---------CC--------CCCCcceEEEeCCCCCC----------CC
Q 012831 322 LENRNE-RSD---------------------P---------GP--------IVTGSRQIYLTFPAEST----------FT 352 (455)
Q Consensus 322 ~~~r~~-r~d---------------------~---------~~--------~~~~~rkIfVg~~l~~~----------~t 352 (455)
+..-.. ... . .. ....+++|+|.| +... ..
T Consensus 354 ~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N-~~~~~~l~~d~~~~~~ 432 (509)
T TIGR01642 354 IAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTN-LVTGDDLMDDEEYEEI 432 (509)
T ss_pred HHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEecc-CCchhHhcCcchHHHH
Confidence 542110 000 0 00 012456789988 4321 12
Q ss_pred HHHHHHHhhccCCceeEEeecc-------CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 353 EDDVSNYFNTYGPVDDVRIPCQ-------QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 353 eedLr~~Fs~fG~I~~V~I~~d-------k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
.++|++.|++||.|+.|.|+.+ ..+|+|||+|.+.++|++|++.||+..++|+.|.|.++.+
T Consensus 433 ~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 433 YEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 3689999999999999999974 2468999999999999999999999999999999998764
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.34 E-value=2.4e-12 Score=135.30 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=108.9
Q ss_pred hHHHhhcCceeeecccccc-ccccccccccceeeEeeccccccccCCC-ccceeEEccccHHHHHhh-CCCCCCCCCCCC
Q 012831 260 MLYYEKYGKVLQAGGYLTE-SQRHGKAGYSLTKLLARLKNSVRLIDRP-HGQHAVILAEDAPKYLEN-RNERSDPGPIVT 336 (455)
Q Consensus 260 ~~yF~kfG~Vl~~~~~~~~-sqr~g~~Gy~l~~~v~rd~n~~r~tgrs-rG~gfV~f~eda~k~~~~-r~~r~d~~~~~~ 336 (455)
..+|+.+|+|.+|.-+.+. ++|.++.+|..-+-.+..+.++.++|+. -|...++-..+|+|.... .....+.+....
T Consensus 197 ~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~ 276 (549)
T KOG0147|consen 197 EEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTG 276 (549)
T ss_pred HHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhcccccccccccc
Confidence 4489999999998732222 3444444554433333333333334322 333333334455443321 111122222233
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..+++|||+ |.+++||++|+..|+.||.|+.|.++.| +++|||||+|.+.+.|++|++.||+.+|-|+.|+|...
T Consensus 277 p~~rl~vgn-LHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 277 PMRRLYVGN-LHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred chhhhhhcc-cccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 344599999 9999999999999999999999999987 69999999999999999999999999999999999887
Q ss_pred ccCccch
Q 012831 413 REKSKLV 419 (455)
Q Consensus 413 ~~k~k~~ 419 (455)
..+-+..
T Consensus 356 ~~r~~~~ 362 (549)
T KOG0147|consen 356 TERVDTK 362 (549)
T ss_pred eeecccc
Confidence 7665544
No 29
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.29 E-value=1e-11 Score=97.39 Aligned_cols=67 Identities=31% Similarity=0.562 Sum_probs=60.9
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccC---CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEE
Q 012831 341 IYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ---KRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (455)
Q Consensus 341 IfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk---~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~ 408 (455)
|||+| +|+.+++++|+++|+.||.|..|++..++ .+|+|||+|.+.++|++|++..+++.++|+.|+
T Consensus 1 v~i~n-lp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISN-LPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEES-STTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeC-CCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999 89999999999999999999999999863 589999999999999999999888999999875
No 30
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.3e-12 Score=122.34 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=75.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..++||||+ |..++||.-|...|-+||.|.+|.||.| ++||||||+|...|+|.+||..||..++.||.|+|..|
T Consensus 9 ~KrtlYVGG-ladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGG-LADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEecc-chHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 578999999 8999999999999999999999999987 79999999999999999999999999999999999999
Q ss_pred ccCc
Q 012831 413 REKS 416 (455)
Q Consensus 413 ~~k~ 416 (455)
+|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 9864
No 31
>PLN03213 repressor of silencing 3; Provisional
Probab=99.28 E-value=8.2e-12 Score=129.60 Aligned_cols=78 Identities=19% Similarity=0.357 Sum_probs=73.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCH--HHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASA--DTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~--e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
...+||||| |.+.+|+++|+..|++||.|.+|.|++.+.||||||+|... .++++||..||+..+.|+.|+|..|++
T Consensus 9 ~gMRIYVGN-LSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGG-LGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 456999999 99999999999999999999999999887899999999987 789999999999999999999999987
Q ss_pred C
Q 012831 415 K 415 (455)
Q Consensus 415 k 415 (455)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 5
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=99.27 E-value=2.7e-11 Score=92.28 Aligned_cols=70 Identities=24% Similarity=0.495 Sum_probs=64.9
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccC--CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ--KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk--~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
+|||++ ++..+++++|+++|.+||+|..+.+..++ .+|+|||+|.+.++|++|++.++++.+.|++|.|+
T Consensus 1 ~v~i~~-l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGN-LPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcC-CCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999 89999999999999999999999999753 67999999999999999999999999999998874
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.6e-11 Score=127.25 Aligned_cols=131 Identities=18% Similarity=0.283 Sum_probs=107.4
Q ss_pred HHHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCC-----
Q 012831 261 LYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGP----- 333 (455)
Q Consensus 261 ~yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~----- 333 (455)
..|+++|.|+.++ +.+| . | +-|+|+|.|. ++|.+|+....-..-.+.
T Consensus 17 ~~f~~~~~v~s~r-------------------vc~d----~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim 70 (369)
T KOG0123|consen 17 DKFSPAGPVLSIR-------------------VCRD----A-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIM 70 (369)
T ss_pred HHhcccCCceeEE-------------------Eeec----C-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEee
Confidence 3688899999877 6777 2 3 9999999996 688888875433221111
Q ss_pred -CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 334 -IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 334 -~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
.......|||.+ |+..++..+|.+.|+.||+|.+|++..+ -++|| ||.|+++++|++|+..+|+..+.|+.|.|.
T Consensus 71 ~s~rd~~~~~i~n-l~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 71 WSQRDPSLVFIKN-LDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred hhccCCceeeecC-CCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 112233499999 9999999999999999999999999988 48999 999999999999999999999999999999
Q ss_pred ecccCccch
Q 012831 411 PYREKSKLV 419 (455)
Q Consensus 411 ~a~~k~k~~ 419 (455)
.+.++..+.
T Consensus 149 ~~~~~~er~ 157 (369)
T KOG0123|consen 149 LFERKEERE 157 (369)
T ss_pred eccchhhhc
Confidence 988776543
No 34
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=3.2e-11 Score=118.92 Aligned_cols=83 Identities=18% Similarity=0.402 Sum_probs=76.1
Q ss_pred CCCCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 329 SDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 329 ~d~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
.+.......-+||||+. |+.+++|..|++.|+.||+|+.|+|+.| +++|||||+|+++-+..+|.+..++..|+|
T Consensus 92 ~dp~a~gDPy~TLFv~R-LnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 92 NDPNAIGDPYKTLFVAR-LNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CCCcccCCccceeeeee-ccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 34556667889999999 9999999999999999999999999988 799999999999999999999999999999
Q ss_pred eEEEEEec
Q 012831 405 ARVLVKPY 412 (455)
Q Consensus 405 r~v~Vk~a 412 (455)
+.|.|..-
T Consensus 171 rri~VDvE 178 (335)
T KOG0113|consen 171 RRILVDVE 178 (335)
T ss_pred cEEEEEec
Confidence 99987653
No 35
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.25 E-value=1.5e-11 Score=120.95 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=71.4
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
+..+.||+||| +.++++.++||+.|++||+|.+|.|++ +|+||.|+-.++|..|+..+++.++.|+++.|.....
T Consensus 75 sk~stkl~vgN-is~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGN-ISPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCC-CCccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 34677999999 899999999999999999999999975 7999999999999999999999999999999998876
Q ss_pred Ccc
Q 012831 415 KSK 417 (455)
Q Consensus 415 k~k 417 (455)
+-.
T Consensus 150 rlr 152 (346)
T KOG0109|consen 150 RLR 152 (346)
T ss_pred ccc
Confidence 543
No 36
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.25 E-value=1.8e-11 Score=133.38 Aligned_cols=77 Identities=17% Similarity=0.400 Sum_probs=71.9
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..++||||+ |+++++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.+|++.|+|+.|+|++.
T Consensus 106 ~~~rLfVGn-Lp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGS-ISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcC-CCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 457999999 8999999999999999999999999987 68999999999999999999999999999999999865
Q ss_pred cc
Q 012831 413 RE 414 (455)
Q Consensus 413 ~~ 414 (455)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 43
No 37
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=4.2e-11 Score=116.23 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=70.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
...+|||+| |++.+||++|+++|+.||+|++|+|+.| +.+|||||+|.++++|+.|+. |++..|.++.|.|..+..
T Consensus 4 ~g~TV~V~N-LS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTN-LSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEec-CCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 457999999 9999999999999999999999999998 567899999999999999995 599999999999988764
No 38
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=2.1e-11 Score=112.36 Aligned_cols=78 Identities=22% Similarity=0.413 Sum_probs=71.9
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~ 416 (455)
..+|||||+ |+..+++.+|+..|..||+|..|.|-. ...|||||+|+++-+|+.|+..|++..|||.+|.|....-+.
T Consensus 9 ~~~kVYVGn-L~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGN-LGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEecc-CCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 468999999 999999999999999999999998887 578999999999999999999999999999999998776544
No 39
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.8e-11 Score=116.61 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=74.5
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
...+|-|.| |+.+++|++|+++|.+||.|..|.|..| .+||||||+|.++++|.+||+.||++-++.--+.|.|+
T Consensus 188 D~~tvRvtN-Lsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTN-LSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEec-CccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 457899999 9999999999999999999999999998 58999999999999999999999999999999999999
Q ss_pred ccC
Q 012831 413 REK 415 (455)
Q Consensus 413 ~~k 415 (455)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 40
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=1e-10 Score=113.68 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=70.4
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
-|||=+ |..+.+|.-|+.+|++||.|..|+|++| ++||||||+..+.++|..||..+|+..+.+|.+.|.+-..|
T Consensus 280 ciFvYN-Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 280 CIFVYN-LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEEEEe-cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 699999 8999999999999999999999999998 79999999999999999999999999999999999875544
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.3e-11 Score=118.60 Aligned_cols=80 Identities=13% Similarity=0.300 Sum_probs=75.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..--+|||. |...++.++||+.|.+||+|.+++|++| |+||||||.|-..++|+.||..||+..|++|.|+-.||
T Consensus 61 ~hfhvfvgd-ls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 61 QHFHVFVGD-LSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred cceeEEehh-cchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 345899999 8999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccCcc
Q 012831 413 REKSK 417 (455)
Q Consensus 413 ~~k~k 417 (455)
..|..
T Consensus 140 TRKp~ 144 (321)
T KOG0148|consen 140 TRKPS 144 (321)
T ss_pred ccCcc
Confidence 98873
No 42
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1e-10 Score=88.55 Aligned_cols=67 Identities=24% Similarity=0.406 Sum_probs=61.2
Q ss_pred EeCCCCCCCCHHHHHHHhhccCCceeEEeeccC----CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 343 LTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 343 Vg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk----~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
|++ ++..+++++|+++|++||.|..+.+..++ ++|+|||+|.+.++|++|++.+++..++|+.|.|.
T Consensus 1 i~~-l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGN-LPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCC-CCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 467 79999999999999999999999999763 48999999999999999999999999999998873
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.16 E-value=9.8e-11 Score=108.64 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=92.6
Q ss_pred cccCCCccceeEEcc--ccHH---HHHhh-----CCCCC----CCCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCc
Q 012831 301 RLIDRPHGQHAVILA--EDAP---KYLEN-----RNERS----DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366 (455)
Q Consensus 301 r~tgrsrG~gfV~f~--eda~---k~~~~-----r~~r~----d~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I 366 (455)
+++...+||||+.|. |||+ |.++. |.-+. ..........+||||| |...++|.-|.+.|+.||.+
T Consensus 45 rv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgN-Ld~~vDe~~L~dtFsafG~l 123 (203)
T KOG0131|consen 45 RVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGN-LDPEVDEKLLYDTFSAFGVL 123 (203)
T ss_pred hhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccc-cCcchhHHHHHHHHHhcccc
Confidence 788889999999994 5665 33332 11111 1112234557999999 89999999999999999998
Q ss_pred eeE-Eeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCccch
Q 012831 367 DDV-RIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419 (455)
Q Consensus 367 ~~V-~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k~~ 419 (455)
... .|+++ .++|||||.|++.|.+.+|+..+|+..++.+++.|..+..+..+.
T Consensus 124 ~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 124 ISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred ccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 763 55554 689999999999999999999999999999999999998766544
No 44
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.16 E-value=4.5e-11 Score=112.80 Aligned_cols=76 Identities=28% Similarity=0.380 Sum_probs=71.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
...+|-|-| |.+.++.++|+.+|++||.|-+|.|+.| ++||||||-|.+..+|+.|++.|++.+++|+.|.|..|
T Consensus 12 gm~SLkVdN-LTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 12 GMTSLKVDN-LTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cceeEEecc-eeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 456899999 8999999999999999999999999998 58999999999999999999999999999999999877
Q ss_pred c
Q 012831 413 R 413 (455)
Q Consensus 413 ~ 413 (455)
+
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 6
No 45
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.2e-10 Score=117.45 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=91.5
Q ss_pred cccCCCccceeEEcc--ccHHHHHhh--------CCCCCCCCCCC--------------CCcceEEEeCCCCCCCCHHHH
Q 012831 301 RLIDRPHGQHAVILA--EDAPKYLEN--------RNERSDPGPIV--------------TGSRQIYLTFPAESTFTEDDV 356 (455)
Q Consensus 301 r~tgrsrG~gfV~f~--eda~k~~~~--------r~~r~d~~~~~--------------~~~rkIfVg~~l~~~~teedL 356 (455)
..|++.+||+||.+. |.|.-+++. |.-+....... ....+|||.. +..+++|+||
T Consensus 149 p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaS-vHpDLSe~Di 227 (544)
T KOG0124|consen 149 PATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVAS-VHPDLSETDI 227 (544)
T ss_pred cccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeee-cCCCccHHHH
Confidence 678999999999984 555555442 11111110110 1456999999 8999999999
Q ss_pred HHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 357 SNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 357 r~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
+..|+.||+|..|.+-++ .+||||||+|.+...-..|+..||-..++|.-++|..+...
T Consensus 228 KSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 228 KSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred HHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 999999999999999987 68999999999999999999999999999999999876543
No 46
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.14 E-value=2e-10 Score=86.86 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=51.4
Q ss_pred HHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 356 VSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 356 Lr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
|+++|++||+|++|.+..++ +++|||+|.+.++|++|++.+|+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998854 699999999999999999999999999999999985
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.13 E-value=2e-10 Score=108.04 Aligned_cols=75 Identities=24% Similarity=0.430 Sum_probs=71.7
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
.++|||++ |+..+|+++|+++|.+||.|..|.|+.+ +.+|||||+|.+.++|..|+..+++..+.|++|.|.++.
T Consensus 115 ~~~l~v~n-L~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGN-LPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeC-CCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 58999999 9999999999999999999999999987 589999999999999999999999999999999999965
No 48
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.13 E-value=3.6e-10 Score=86.47 Aligned_cols=71 Identities=24% Similarity=0.406 Sum_probs=66.0
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccC---CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ---KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk---~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
+|||++ ++..+++++|+++|+.||.|..+.+..+. .+|+|||+|.+.++|+.|+..+++..++|+.+.|.+
T Consensus 1 ~i~i~~-l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGN-LPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeC-CCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999 89999999999999999999999999863 489999999999999999999999999999999864
No 49
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.13 E-value=2e-10 Score=121.20 Aligned_cols=77 Identities=19% Similarity=0.344 Sum_probs=71.2
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..++|||++ |+..+++++|+++|++||+|.+|+|+.| +++|||||+|.+.++|++||. +++..+.|+.|.|+..
T Consensus 88 ~~~~l~V~n-lp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 88 DDRTVFVLQ-LALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred CCcEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 468999999 8999999999999999999999999987 579999999999999999998 5999999999999887
Q ss_pred ccC
Q 012831 413 REK 415 (455)
Q Consensus 413 ~~k 415 (455)
..+
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 654
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=1.9e-10 Score=112.14 Aligned_cols=100 Identities=18% Similarity=0.312 Sum_probs=88.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCC-eeEcC--eEEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNP-HFVCG--ARVLV 409 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~-~~I~G--r~v~V 409 (455)
...||||||. |...-.|||+|++|..||+|++|.+.+. .+||||||+|.+..+|+.||..+++ ..+-| ..+.|
T Consensus 17 ~~drklfvgm-l~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGM-LNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhh-hcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 3678999999 8999999999999999999999999985 6899999999999999999999763 34444 57899
Q ss_pred EecccCccchhHHHhhhhCCCCCCCCC
Q 012831 410 KPYREKSKLVDRKYQERMESPMYFSPQ 436 (455)
Q Consensus 410 k~a~~k~k~~~~~~~~~~~~~~~~~p~ 436 (455)
|++...+++..++.++...+.+.++|-
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl 122 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPL 122 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCcc
Confidence 999999998999999888888888874
No 51
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.04 E-value=1.2e-10 Score=117.66 Aligned_cols=81 Identities=27% Similarity=0.421 Sum_probs=75.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
...|||||+ +.|.++++.|++||++||+|.+|.+++| ++|||+||+|++++.+.+++.. ..|.|+|+.|+++.|
T Consensus 5 ~~~KlfiGg-isw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGG-LSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecC-cCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 468999999 8999999999999999999999999998 6999999999999999999987 799999999999999
Q ss_pred ccCccch
Q 012831 413 REKSKLV 419 (455)
Q Consensus 413 ~~k~k~~ 419 (455)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 9987543
No 52
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.02 E-value=3.1e-10 Score=105.39 Aligned_cols=77 Identities=18% Similarity=0.322 Sum_probs=73.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
+..|||||+ |+..++++.|.++|-+-|+|.+++|++| ..+|||||+|.++|+|+-|++-||...+.|++|+|..+
T Consensus 8 qd~tiyvgn-ld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGN-LDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEec-CCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 457999999 8999999999999999999999999988 48999999999999999999999999999999999998
Q ss_pred cc
Q 012831 413 RE 414 (455)
Q Consensus 413 ~~ 414 (455)
..
T Consensus 87 s~ 88 (203)
T KOG0131|consen 87 SA 88 (203)
T ss_pred cc
Confidence 83
No 53
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=8.8e-10 Score=114.33 Aligned_cols=135 Identities=20% Similarity=0.359 Sum_probs=106.1
Q ss_pred hHHHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCC------
Q 012831 260 MLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDP------ 331 (455)
Q Consensus 260 ~~yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~------ 331 (455)
..+|..||.|..+. ++++ .+++++||+||.|. +++.+++..-......
T Consensus 185 ~~~f~~~g~i~s~~-------------------v~~~-----~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V 240 (369)
T KOG0123|consen 185 KDLFSAYGSITSVA-------------------VMRD-----SIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYV 240 (369)
T ss_pred HHhhcccCcceEEE-------------------Eeec-----CCCCCCCccceeecChhHHHHHHHhccCCcCCccceee
Confidence 34888999888765 4554 45778999999995 5666665531111100
Q ss_pred ----------------------CC-CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEEC
Q 012831 332 ----------------------GP-IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFA 385 (455)
Q Consensus 332 ----------------------~~-~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~ 385 (455)
.. .......|||.| ++..++++.|++.|+.||+|..++|+.+ +++|||||.|.
T Consensus 241 ~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vkn-ld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs 319 (369)
T KOG0123|consen 241 GRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKN-LDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFS 319 (369)
T ss_pred cccccchhhHHHHhhhhHhhhhhcccccccccccccc-CccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcC
Confidence 00 122456899999 8999999999999999999999999986 79999999999
Q ss_pred CHHHHHHHHHhcCCeeEcCeEEEEEecccCccch
Q 012831 386 SADTVKMILAKGNPHFVCGARVLVKPYREKSKLV 419 (455)
Q Consensus 386 ~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k~~ 419 (455)
+.++|.+|+..+|+..+.++.+.|.++..+....
T Consensus 320 ~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 320 SPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred CHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 9999999999999999999999999988544433
No 54
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.00 E-value=6.7e-10 Score=120.64 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=76.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~ 416 (455)
-++|||||+ ++..++|.||++.|+.||+|++|.++. .||||||+.....+|++|+.+|+.+.+.++.|+|+||..++
T Consensus 420 ~SrTLwvG~-i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGG-IPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeecc-ccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 578999999 899999999999999999999999988 89999999999999999999999999999999999999887
Q ss_pred cch
Q 012831 417 KLV 419 (455)
Q Consensus 417 k~~ 419 (455)
-+.
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 655
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=8.5e-10 Score=113.44 Aligned_cols=82 Identities=18% Similarity=0.249 Sum_probs=71.6
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhc-CCeeEcC--eEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKG-NPHFVCG--ARVL 408 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~l-n~~~I~G--r~v~ 408 (455)
...-|+|||- +|.+++|.|||++|++||.|.+|.|++| .++||+||+|.+.++|.+|+.++ |.+.+-| ..|.
T Consensus 32 ~~~vKlfVgq-Iprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQ-IPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheecc-CCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4567999999 8999999999999999999999999999 48999999999999999999986 4555655 6888
Q ss_pred EEecccCccc
Q 012831 409 VKPYREKSKL 418 (455)
Q Consensus 409 Vk~a~~k~k~ 418 (455)
||+|...+++
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 9999865544
No 56
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.3e-10 Score=107.89 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=70.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
.+--||||| |++++||.||-..|++||+|++|.+++| +++||||..|++.-+--.|+..+|+..|.||.|+|.-.
T Consensus 34 dsA~Iyigg-l~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGG-LPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECC-CcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 356799999 9999999999999999999999999998 69999999999999998999999999999999998743
No 57
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1.4e-09 Score=95.95 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=70.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccC----CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk----~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
.+.|||||| |.+.++||+|.++|++.|+|..|.|-.|+ .-||+||.|-+.++|+.|+.-+++..++.+.|.|.|-
T Consensus 35 ~S~tvyVgN-lSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGN-LSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEee-eeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 578999999 89999999999999999999999887773 5699999999999999999999999999999999875
Q ss_pred c
Q 012831 413 R 413 (455)
Q Consensus 413 ~ 413 (455)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=98.94 E-value=2.7e-09 Score=84.76 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=51.0
Q ss_pred HHHHHHHhh----ccCCceeEE-eecc------CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 353 EDDVSNYFN----TYGPVDDVR-IPCQ------QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 353 eedLr~~Fs----~fG~I~~V~-I~~d------k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
+++|+++|+ +||.|.+|. |+.+ ++||||||+|.+.++|.+|+..||+..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 688999998 999999995 4433 47999999999999999999999999999999876
No 59
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=2.5e-09 Score=115.55 Aligned_cols=113 Identities=22% Similarity=0.323 Sum_probs=90.3
Q ss_pred CCccceeEEcc--ccHHHHHhh-CCCCCC----------------CCCC---CCCcceEEEeCCCCCCCCHHHHHHHhhc
Q 012831 305 RPHGQHAVILA--EDAPKYLEN-RNERSD----------------PGPI---VTGSRQIYLTFPAESTFTEDDVSNYFNT 362 (455)
Q Consensus 305 rsrG~gfV~f~--eda~k~~~~-r~~r~d----------------~~~~---~~~~rkIfVg~~l~~~~teedLr~~Fs~ 362 (455)
-|.|||||.|. ++|..++.. .+...+ .+.. .....+|.|.| +|+..+-.+|+.+|..
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRN-ipFeAt~rEVr~LF~a 636 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRN-IPFEATKREVRKLFTA 636 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeec-cchHHHHHHHHHHHhc
Confidence 36799999996 566666543 111111 1111 11346999999 8999999999999999
Q ss_pred cCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCccc
Q 012831 363 YGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418 (455)
Q Consensus 363 fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k~ 418 (455)
||.|.+|+|+.. .+||||||+|-++.+|.+|+..+..+.+.||++.+.||+.....
T Consensus 637 FGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~~ 696 (725)
T KOG0110|consen 637 FGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNTM 696 (725)
T ss_pred ccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchHH
Confidence 999999999964 47999999999999999999998899999999999999976643
No 60
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.92 E-value=2.8e-09 Score=112.18 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=74.4
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
+.||||+ ++++++|++|.++|+..|.|.++++++| +.|||||++|.+.++++.|++.+|+.++.||+++|.|+..
T Consensus 19 ~~v~vgn-ip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGN-IPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecC-CCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999 8999999999999999999999999998 6899999999999999999999999999999999999876
Q ss_pred Ccc
Q 012831 415 KSK 417 (455)
Q Consensus 415 k~k 417 (455)
...
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 544
No 61
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=7.5e-09 Score=88.41 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=74.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
.++-|||.| ||+.+|.|+.-++|++||.|..|+|-.. .-||-|||.|++..+|++|+..|++..++++-+.|-.+.+.
T Consensus 17 vnriLyirN-Lp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 17 VNRILYIRN-LPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hheeEEEec-CCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 577899999 9999999999999999999999999876 57999999999999999999999999999999999998875
Q ss_pred cc
Q 012831 416 SK 417 (455)
Q Consensus 416 ~k 417 (455)
.+
T Consensus 96 ~~ 97 (124)
T KOG0114|consen 96 DA 97 (124)
T ss_pred HH
Confidence 43
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.85 E-value=3e-09 Score=104.97 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=71.5
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCccc
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k~ 418 (455)
-|+|||| ||..+++.+|+.+|++||+|.+|.|++ .||||..++...++.||..|++..|+|..|.|+-++.|.+.
T Consensus 3 ~KLFIGN-Lp~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGN-LPREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccC-CCcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 4899999 999999999999999999999999975 69999999999999999999999999999999999988654
Q ss_pred hh
Q 012831 419 VD 420 (455)
Q Consensus 419 ~~ 420 (455)
..
T Consensus 78 st 79 (346)
T KOG0109|consen 78 ST 79 (346)
T ss_pred cc
Confidence 43
No 63
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=5.8e-09 Score=97.24 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=70.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
.+++||||| ||.++.|.+|+++|.+||.|.+|.+... ....||||.|+++-+|+.||..-++..++|.+++|..+..-
T Consensus 5 ~~~~iyvGN-LP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGN-LPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecC-CCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 468999999 9999999999999999999999988753 34679999999999999999988999999999999987653
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=3.7e-09 Score=106.84 Aligned_cols=74 Identities=18% Similarity=0.433 Sum_probs=69.7
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
.++||||. +.+++.|+.||..|..||+|.+|.+-.| ++||||||+|+-+|.|+.|++.||+..++||.|+|..-
T Consensus 113 McRvYVGS-IsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGS-ISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeee-eEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 46899999 8999999999999999999999999887 79999999999999999999999999999999999843
No 65
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=8e-09 Score=108.90 Aligned_cols=80 Identities=24% Similarity=0.427 Sum_probs=74.6
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
.||||++ ||+.++.++|.++|+.+|+|..+.++.+ .+||||||+|+-.|++++|++..+...+.|+.|.|..|++
T Consensus 6 ~TlfV~~-lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVSR-LPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEec-CCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 7999999 9999999999999999999999999986 6899999999999999999999999999999999999987
Q ss_pred Cccch
Q 012831 415 KSKLV 419 (455)
Q Consensus 415 k~k~~ 419 (455)
+....
T Consensus 85 R~r~e 89 (678)
T KOG0127|consen 85 RARSE 89 (678)
T ss_pred cccch
Confidence 65443
No 66
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=8.1e-09 Score=91.95 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=71.0
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccC----CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk----~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
-|||++ +....||++|.+.|..||+|..+.+-.|+ .||||.|.|++.++|++|+..+|+..+.|..|.|.|+--+
T Consensus 74 Ii~Vtg-vHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 74 IIFVTG-VHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEec-cCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 799999 89999999999999999999999998873 6899999999999999999999999999999999998654
Q ss_pred c
Q 012831 416 S 416 (455)
Q Consensus 416 ~ 416 (455)
.
T Consensus 153 g 153 (170)
T KOG0130|consen 153 G 153 (170)
T ss_pred C
Confidence 4
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.73 E-value=2.5e-08 Score=102.85 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=71.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhh-ccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFN-TYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs-~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....|.+||++ +|+++.+.+|+++|. +-|+|+.|.+..| |.||||.|+|+++|.+++|+++||.+.++||.+.||
T Consensus 41 ~~r~R~vfItN-Ipyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITN-IPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEec-CcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34567799999 899999999999995 6799999999998 799999999999999999999999999999999998
Q ss_pred ecc
Q 012831 411 PYR 413 (455)
Q Consensus 411 ~a~ 413 (455)
.-.
T Consensus 120 Ed~ 122 (608)
T KOG4212|consen 120 EDH 122 (608)
T ss_pred ccC
Confidence 544
No 68
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.65 E-value=5.9e-08 Score=92.99 Aligned_cols=83 Identities=14% Similarity=0.285 Sum_probs=75.8
Q ss_pred cceEEEeCCCCCCCCHHHHHH----HhhccCCceeEEeecc-CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 338 SRQIYLTFPAESTFTEDDVSN----YFNTYGPVDDVRIPCQ-QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~----~Fs~fG~I~~V~I~~d-k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
+.||||-+ |...+..++|++ +|++||+|.+|....- +.||-|||.|++.+.|-.|+..|++..+.|+.++|.+|
T Consensus 9 n~TlYInn-LnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINN-LNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehh-ccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 34999999 899999999998 9999999999988754 78999999999999999999999999999999999999
Q ss_pred ccCccchhH
Q 012831 413 REKSKLVDR 421 (455)
Q Consensus 413 ~~k~k~~~~ 421 (455)
+.+.....+
T Consensus 88 ~s~sdii~~ 96 (221)
T KOG4206|consen 88 KSDSDIIAQ 96 (221)
T ss_pred cCccchhhc
Confidence 987765554
No 69
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=1.3e-07 Score=92.66 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=76.6
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
.++..+.|||=. ||.++++.+|-..|-.||.|.+.++..| ++|.||||.|+++.++++||..||+..|+-++++|
T Consensus 281 eGPeGCNlFIYH-LPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 281 EGPEGCNLFIYH-LPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred cCCCcceEEEEe-CchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 456788999999 9999999999999999999999999877 69999999999999999999999999999999999
Q ss_pred EecccCcc
Q 012831 410 KPYREKSK 417 (455)
Q Consensus 410 k~a~~k~k 417 (455)
..-+||..
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 88777754
No 70
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.44 E-value=2.8e-07 Score=97.64 Aligned_cols=77 Identities=21% Similarity=0.361 Sum_probs=71.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-C---CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-Q---KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-k---~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..+.|||.+ |...+...||+++|++||+|+-.+|+++ + .|.|||||+.+.++|.++|+.|+.+.+.|+.|.|..+
T Consensus 404 ~gRNlWVSG-LSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSG-LSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeec-cccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 467999999 8999999999999999999999999987 2 5779999999999999999999999999999999988
Q ss_pred cc
Q 012831 413 RE 414 (455)
Q Consensus 413 ~~ 414 (455)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 74
No 71
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=4e-07 Score=92.09 Aligned_cols=81 Identities=11% Similarity=0.253 Sum_probs=73.8
Q ss_pred CCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccC----CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEE
Q 012831 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ----KRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (455)
Q Consensus 333 ~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk----~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~ 408 (455)
...|+..-|||-- |.+-+|.+||.-+|+.||.|..|.|++|+ +-.||||.|++.+++++|.-+|+...|+.++|.
T Consensus 234 d~~PPeNVLFVCK-LNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCK-LNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEe-cCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 3567788999999 89999999999999999999999999994 445999999999999999999999999999999
Q ss_pred EEeccc
Q 012831 409 VKPYRE 414 (455)
Q Consensus 409 Vk~a~~ 414 (455)
|.+...
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 987654
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=1.2e-06 Score=95.32 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=68.2
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccC-------CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ-------KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk-------~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
+|||.| +.+++|.+++...|...|.|..+.|..-+ +.|||||.|.+.++|++|++.|+++.|+|+.|.|+.+
T Consensus 517 ~lfvkN-lnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 517 KLFVKN-LNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhc-CCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 499999 99999999999999999999999998642 4499999999999999999999999999999999998
Q ss_pred c
Q 012831 413 R 413 (455)
Q Consensus 413 ~ 413 (455)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 73
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.26 E-value=2e-06 Score=81.64 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=69.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcc-CCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTY-GPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~f-G~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...-+||+. ++.-+-+.++..||.+| |.|..+++-++ .+||||||.|++++.|+-|.+.||+..+.|+.+.|..
T Consensus 48 ~~g~~~~~~-~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDH-IPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred Cccceeecc-cccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345688888 89999999999999999 88888888776 5899999999999999999999999999999999988
Q ss_pred cccC
Q 012831 412 YREK 415 (455)
Q Consensus 412 a~~k 415 (455)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7776
No 74
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.25 E-value=4.1e-06 Score=88.00 Aligned_cols=111 Identities=23% Similarity=0.290 Sum_probs=83.8
Q ss_pred cccCCCccceeEEcc--ccHHHHHhhCCCCC---------------C--CCCCC----CCcceEEEeCCCCCCCCHHHHH
Q 012831 301 RLIDRPHGQHAVILA--EDAPKYLENRNERS---------------D--PGPIV----TGSRQIYLTFPAESTFTEDDVS 357 (455)
Q Consensus 301 r~tgrsrG~gfV~f~--eda~k~~~~r~~r~---------------d--~~~~~----~~~rkIfVg~~l~~~~teedLr 357 (455)
+.++|..|-++|+|. ||+++++....+.. + ..... .....|-+-+ ||+.+|++||.
T Consensus 43 r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRG-LPfscte~dI~ 121 (510)
T KOG4211|consen 43 RRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRG-LPFSCTEEDIV 121 (510)
T ss_pred ccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecC-CCccCcHHHHH
Confidence 557999999999995 68888876421111 0 01111 1345788899 99999999999
Q ss_pred HHhhccCCcee-EEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 358 NYFNTYGPVDD-VRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 358 ~~Fs~fG~I~~-V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
++|+--=.|.+ |.++.| ++-|=|||+|++.|.|++||.. +...|..|-|+|-.+.
T Consensus 122 ~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 122 EFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred HHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 99998755555 444444 5678899999999999999998 8999999999997654
No 75
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.23 E-value=2.4e-06 Score=89.93 Aligned_cols=74 Identities=23% Similarity=0.433 Sum_probs=66.5
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeec----cCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC----QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~----dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
.+|||.+ ||.++++++|++.|..||+|+...|.. ++...||||+|.+.++++.||.+ +...|+|+++.|+--++
T Consensus 289 ~~i~V~n-lP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKN-LPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeec-CCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 3599999 999999999999999999999988875 24448999999999999999999 79999999999987665
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.19 E-value=2.8e-06 Score=88.07 Aligned_cols=74 Identities=20% Similarity=0.112 Sum_probs=68.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
..+.++|||.+ ||+++|+..||+-|..||.|..+.|+.. +++| .|.|.++++|++|++.|++..++||.|+|.+
T Consensus 533 arKa~qIiirN-lP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRN-LPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEec-CCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45678999999 9999999999999999999999999764 5665 9999999999999999999999999999976
No 77
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.18 E-value=1.5e-05 Score=76.66 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=65.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEc-CeEEEEEecc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC-GARVLVKPYR 413 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~-Gr~v~Vk~a~ 413 (455)
.+....+|+.+ +|..++.+.+..+|.+|.--.+|+++..+ ++.|||+|.+...+..|...+.+..|- ...+.|..++
T Consensus 143 ~ppn~ilf~~n-iP~es~~e~l~~lf~qf~g~keir~i~~~-~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTN-IPSESESEMLSDLFEQFPGFKEIRLIPPR-SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEec-CCcchhHHHHHHHHhhCcccceeEeccCC-CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 34667899999 89999999999999999999999998754 689999999999999998887766664 6677776654
No 78
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.17 E-value=3.3e-06 Score=91.71 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=73.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-------CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-------QKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-------k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v 407 (455)
.|.++.+|||| ++..++|+.|-.-|+.||+|..|+|+.. +.+.||||-|-+..+|++|++.|++..+.++.+
T Consensus 171 DP~TTNlyv~N-lnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGN-LNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeec-CCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 56788999999 8999999999999999999999999964 467899999999999999999999999999999
Q ss_pred EEEeccc
Q 012831 408 LVKPYRE 414 (455)
Q Consensus 408 ~Vk~a~~ 414 (455)
++.|+++
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999853
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=1.7e-06 Score=83.45 Aligned_cols=72 Identities=26% Similarity=0.492 Sum_probs=66.9
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
.++|||. +++.+.+.+|.++|..||.|.+|.+. .|||||.|.+.-+|+.|+..+|+.+++|.++.|.++..+
T Consensus 2 ~rv~vg~-~~~~~~~~d~E~~f~~yg~~~d~~mk----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGR-LPYRARERDVERFFKGYGKIPDADMK----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred Cceeecc-cCCccchhHHHHHHhhccccccceee----cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999 89999999999999999999999884 499999999999999999999999999999889888853
No 80
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.07 E-value=1.2e-05 Score=78.96 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=72.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
.....+|+|.| |+..++++||+++|..||++..+-|-++ ++.|.|=|+|...++|.+|++.+++..++|+.+++..
T Consensus 80 ~~~~~~v~v~N-L~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSN-LPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeec-CCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 34557999999 9999999999999999999999999998 5779999999999999999999999999999998876
Q ss_pred cccC
Q 012831 412 YREK 415 (455)
Q Consensus 412 a~~k 415 (455)
..+.
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 6543
No 81
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.98 E-value=6e-06 Score=79.16 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=69.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
.+..+||||++ +...++|+-|.++|-+-|+|..|.|+.+ +.| ||||.|.++-.+.-|++.+|+..+.+..+.|+.
T Consensus 6 ae~drtl~v~n-~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQN-MYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHh-hhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34678999999 8999999999999999999999999976 344 999999999999999999999999999998876
Q ss_pred cc
Q 012831 412 YR 413 (455)
Q Consensus 412 a~ 413 (455)
-.
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 54
No 82
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.86 E-value=2.1e-05 Score=77.05 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=70.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..+.+|||+ +.+.+|-+++..+|+.||.|..|.|++| +.|||+||.|.+.+.++.|+. |++..|.|+.++|.+.
T Consensus 100 d~~sv~v~n-vd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 100 DAPSVWVGN-VDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred CCceEEEec-cccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 467899999 8999999999999999999999999988 478999999999999999999 7999999999999876
Q ss_pred ccC
Q 012831 413 REK 415 (455)
Q Consensus 413 ~~k 415 (455)
.-+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 544
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.86 E-value=1.5e-05 Score=76.89 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=62.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
....+.|.+ +...+.+.+|+++|..||++..+.+ .++++||.|+..+++.+|+..+++..+.|+.|.+..+.
T Consensus 98 s~~r~~~~~-~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 98 THFRLIVRN-LSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred ccceeeecc-chhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 344677787 7888889999999999999966655 47899999999999999999999999999999995443
No 84
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.73 E-value=2.7e-05 Score=76.20 Aligned_cols=76 Identities=12% Similarity=0.259 Sum_probs=69.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..-+||.|- |.-+++.+.|.+.|.+|-.-...++++| +++|||||.|.+.+++..|+.+|++..++.+.|+.+..
T Consensus 189 ~DfRIfcgd-lgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGD-LGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeeccc-ccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 456999999 8999999999999999998888999987 69999999999999999999999999999999987654
Q ss_pred c
Q 012831 413 R 413 (455)
Q Consensus 413 ~ 413 (455)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 4
No 85
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.70 E-value=6.8e-06 Score=53.86 Aligned_cols=23 Identities=43% Similarity=1.178 Sum_probs=17.5
Q ss_pred CcccccccC-cccCCCCCCccccC
Q 012831 183 VKTCHYFNK-GFCKHGSNCRYYHG 205 (455)
Q Consensus 183 ~kpC~Yf~r-G~Ck~G~sCry~Hg 205 (455)
-++|++|.+ |.|++|++|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 468997766 99999999999997
No 86
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.68 E-value=0.00012 Score=74.42 Aligned_cols=76 Identities=11% Similarity=0.179 Sum_probs=67.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCcee--------EEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCe
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD--------VRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~--------V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr 405 (455)
.+..|||.| ||.++|.+++.++|+++|-|.. |++-.+ +-||=|.++|-..|+|+.|+..|+...+.|+
T Consensus 133 ~Nt~VYVsg-LP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSG-LPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecC-CCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 456799999 9999999999999999998864 455544 5789999999999999999999999999999
Q ss_pred EEEEEecc
Q 012831 406 RVLVKPYR 413 (455)
Q Consensus 406 ~v~Vk~a~ 413 (455)
.|+|..|+
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99999886
No 87
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=97.66 E-value=4.1e-05 Score=74.19 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=37.6
Q ss_pred ccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEccc--cHHHHH
Q 012831 253 ISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAE--DAPKYL 322 (455)
Q Consensus 253 ~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~e--da~k~~ 322 (455)
+.|++||+. |||+||+|+++. |..| +.|+||+|||||+|.| .|.++.
T Consensus 15 ifVggL~w~T~~~~l~~yFeqfGeI~eav-------------------vitd----~~t~rskGyGfVTf~d~~aa~rAc 71 (247)
T KOG0149|consen 15 IFVGGLAWETHKETLRRYFEQFGEIVEAV-------------------VITD----KNTGRSKGYGFVTFRDAEAATRAC 71 (247)
T ss_pred EEEcCcccccchHHHHHHHHHhCceEEEE-------------------EEec----cCCccccceeeEEeecHHHHHHHh
Confidence 456666655 999999999986 5666 6789999999999974 555665
Q ss_pred h
Q 012831 323 E 323 (455)
Q Consensus 323 ~ 323 (455)
.
T Consensus 72 ~ 72 (247)
T KOG0149|consen 72 K 72 (247)
T ss_pred c
Confidence 4
No 88
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.66 E-value=0.00046 Score=64.97 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=57.2
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeE--cCeEEEEE
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV--CGARVLVK 410 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I--~Gr~v~Vk 410 (455)
...+.|.+ ||..-+++||+++..+-|.|.-..+.+ -|.|.|.|...|+.+-|+.++....+ .|....+.
T Consensus 115 e~RVvVsG-Lp~SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 115 EYRVVVSG-LPPSGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred ceeEEEec-CCCCCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 34899999 899999999999999999999988876 46999999999999999999765444 45444443
No 89
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.63 E-value=0.00021 Score=68.97 Aligned_cols=85 Identities=14% Similarity=0.199 Sum_probs=69.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-C----CCCeEEEEECCHHHHHHHHHhcCCeeEc---CeEEE
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-Q----KRMFGFVTFASADTVKMILAKGNPHFVC---GARVL 408 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-k----~RGfaFVtF~~~e~A~~Al~~ln~~~I~---Gr~v~ 408 (455)
..|||||.| ||-++...+|..+|..|---+.+.|..- + .+-+|||+|.+...|.+|++.+|+..++ +..+.
T Consensus 33 ~VRTLFVSG-LP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSG-LPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeecc-CCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 468999999 9999999999999999866666655542 2 3469999999999999999999999984 78888
Q ss_pred EEecccCccchhHH
Q 012831 409 VKPYREKSKLVDRK 422 (455)
Q Consensus 409 Vk~a~~k~k~~~~~ 422 (455)
+..|+...|...++
T Consensus 112 iElAKSNtK~kr~k 125 (284)
T KOG1457|consen 112 IELAKSNTKRKRRK 125 (284)
T ss_pred eeehhcCcccccCC
Confidence 88888765554433
No 90
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=4.2e-05 Score=81.56 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=66.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~ 408 (455)
....++|+|-+ |+.++++++|++.|+.||+|.+|+.-. .++|-.||.|-+.-+|++|++++++..|.|++++
T Consensus 72 ~~~~~~L~v~n-l~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFN-LPRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEe-cCCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34678999999 999999999999999999999987655 3589999999999999999999999999999988
No 91
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.52 E-value=8.1e-05 Score=75.03 Aligned_cols=80 Identities=21% Similarity=0.417 Sum_probs=71.9
Q ss_pred CcceEE-EeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 337 GSRQIY-LTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 337 ~~rkIf-Vg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++| |++ +++.+++++|+.+|..+|.|..++++.+ ..+|||+|.|........++.. ..+.+.|+.+.+..
T Consensus 183 ~s~~~~~~~~-~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 183 PSDTIFFVGE-LDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred ccccceeecc-cccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 445777 898 9999999999999999999999999986 5899999999999999999987 89999999999998
Q ss_pred cccCccc
Q 012831 412 YREKSKL 418 (455)
Q Consensus 412 a~~k~k~ 418 (455)
..++.+.
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 8877553
No 92
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.50 E-value=0.00023 Score=75.18 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=67.9
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
..-|-+-+ |||++|++||.++|+-. .|+.+.+++. |..|=|||+|.++|++++|+++ +...+..|-|+|-.+..+
T Consensus 10 ~~~vr~rG-LPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRG-LPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecC-CCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 44566788 99999999999999999 5888888876 7889999999999999999999 899999999999988765
Q ss_pred cc
Q 012831 416 SK 417 (455)
Q Consensus 416 ~k 417 (455)
..
T Consensus 87 e~ 88 (510)
T KOG4211|consen 87 EA 88 (510)
T ss_pred cc
Confidence 54
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.47 E-value=0.0004 Score=71.98 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=69.5
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
+..|.|.++-+..+|.+-|-.+|+-||.|..|+|.++++ --|.|.+.+...|+.|++.++++.+.|++|+|...+-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 578999996678899999999999999999999999754 6799999999999999999999999999999988773
No 94
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.39 E-value=8.6e-05 Score=47.85 Aligned_cols=22 Identities=32% Similarity=1.164 Sum_probs=20.4
Q ss_pred cccccccCcccCCCCCCccccC
Q 012831 184 KTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 184 kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
.+|.+|..|.|.+|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899889999999999999996
No 95
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.37 E-value=0.00022 Score=74.95 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=54.2
Q ss_pred CHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCc
Q 012831 352 TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (455)
Q Consensus 352 teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~ 416 (455)
|-++|..+|.+||+|+.|.|-+. ---|.|||.+..+|-.|... .+..|+++.|+|.|-++..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhcc-ccceecCceeEEEEecCCc
Confidence 66899999999999999998773 34599999999999777766 7999999999999998854
No 96
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.04 E-value=0.0013 Score=49.78 Aligned_cols=52 Identities=15% Similarity=0.324 Sum_probs=42.1
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHH
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMIL 394 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al 394 (455)
+.|-|.| .+... .+.+.++|..||+|.++.+.. ..-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~G-f~~~~-~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSG-FPPDL-AEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEe-ECchH-HHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 5677888 45443 366778999999999999874 4679999999999999985
No 97
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.91 E-value=0.0046 Score=52.78 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=64.3
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhc--cCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEc----CeEEE
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNT--YGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVC----GARVL 408 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~--fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~----Gr~v~ 408 (455)
+||-|.| +|-..|.++|.+++.. .|...-+.+|.| -..|||||.|.+++.|.+-.+..+++.+. .+.+.
T Consensus 2 TTvMirN-IPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRN-IPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEec-CCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 5888999 8999999999988865 377788888887 36899999999999999999888887775 56778
Q ss_pred EEecccCcc
Q 012831 409 VKPYREKSK 417 (455)
Q Consensus 409 Vk~a~~k~k 417 (455)
|.+|.-.++
T Consensus 81 i~yAriQG~ 89 (97)
T PF04059_consen 81 ISYARIQGK 89 (97)
T ss_pred EehhHhhCH
Confidence 888765443
No 98
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.84 E-value=0.0038 Score=51.97 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=47.2
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhh----cc-CCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFN----TY-GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs----~f-G~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
..|||.| ||.+.+...|+.-.. -+ |+|..| ..+-|.|.|.+++.|++|.+.|++-.+-|.+|.|+...
T Consensus 3 s~L~V~N-LP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSN-LPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEec-CCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4689999 899888777666554 44 777777 36889999999999999999999999999999999875
Q ss_pred cCc
Q 012831 414 EKS 416 (455)
Q Consensus 414 ~k~ 416 (455)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 433
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.78 E-value=0.0018 Score=55.94 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=43.3
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcC-----CeeEcCeEEEEEecc
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN-----PHFVCGARVLVKPYR 413 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln-----~~~I~Gr~v~Vk~a~ 413 (455)
-|.|.+ ++..++.++|++.|++||.|.-|.+.. .---|+|-|.+++.|++|++++. +..|.+..+.+..-.
T Consensus 3 il~~~g-~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 3 ILKFSG-LGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp EEEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---
T ss_pred EEEEec-CCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECC
Confidence 367888 788899999999999999999998866 33479999999999999998742 456677666665433
No 100
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.70 E-value=0.00095 Score=74.49 Aligned_cols=107 Identities=13% Similarity=0.040 Sum_probs=85.9
Q ss_pred cccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---C
Q 012831 301 RLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---Q 375 (455)
Q Consensus 301 r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k 375 (455)
...++.||.++++|. +++.+++..+.... ....+++|.| +|+..|.+.++.+++.+|.+.+++++.. +
T Consensus 703 ~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~------~gK~~v~i~g-~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gk 775 (881)
T KOG0128|consen 703 KNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF------FGKISVAISG-PPFQGTKEELKSLASKTGNVTSLRLVTVRAGK 775 (881)
T ss_pred hhccccccceeeEeecCCchhhhhhhhhhhh------hhhhhhheeC-CCCCCchHHHHhhccccCCccccchhhhhccc
Confidence 356889999999994 66777776433211 1256899999 8999999999999999999999998864 6
Q ss_pred CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 376 KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 376 ~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
.+|-|+|.|.++.++.++...+....+.-..+.|....|
T Consensus 776 pkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 776 PKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred cccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 899999999999999999988777777666666665444
No 101
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.63 E-value=0.0043 Score=69.83 Aligned_cols=103 Identities=11% Similarity=0.144 Sum_probs=78.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcC--eEEEEEecc
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG--ARVLVKPYR 413 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~G--r~v~Vk~a~ 413 (455)
..++.++||+ |...+....|...|..||.|..|.+-. ..-||+|.|++...++.|+..|-+..|+| +++.|..+.
T Consensus 453 t~ttr~~sgg-lg~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGG-LGPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCC-CCCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4578999999 788888899999999999999987644 45699999999999999999988888876 779999999
Q ss_pred cCccchhHHHhhhhCCCCCCCCCCCCCCCCC
Q 012831 414 EKSKLVDRKYQERMESPMYFSPQYVDMDSEL 444 (455)
Q Consensus 414 ~k~k~~~~~~~~~~~~~~~~~p~~~d~d~~~ 444 (455)
+-.+.+.+. ....+...+++|++.....
T Consensus 530 ~~~~~Pqq~---~~~~p~~~~k~~~~at~~~ 557 (975)
T KOG0112|consen 530 PPGATPQQN---LLTSPPVPPKHYIEATDTG 557 (975)
T ss_pred CCCCChhhh---cccCCCCCCCCcccccccc
Confidence 887765432 2222333344555444433
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.63 E-value=0.0039 Score=63.44 Aligned_cols=78 Identities=12% Similarity=0.276 Sum_probs=60.4
Q ss_pred CcceEEEeCCCCCCCCHHH----H--HHHhhccCCceeEEeeccC-----CCC-e-EEEEECCHHHHHHHHHhcCCeeEc
Q 012831 337 GSRQIYLTFPAESTFTEDD----V--SNYFNTYGPVDDVRIPCQQ-----KRM-F-GFVTFASADTVKMILAKGNPHFVC 403 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teed----L--r~~Fs~fG~I~~V~I~~dk-----~RG-f-aFVtF~~~e~A~~Al~~ln~~~I~ 403 (455)
+..-+||-+ ++..+..|+ | .+||++||.|..|.|-+.. -.+ + .+|+|.+.|+|.++|+..++..++
T Consensus 113 QKNLvYVig-i~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 113 QKNLVYVIG-IPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred ecceeEEec-CCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 445789999 565554444 3 3899999999999876531 112 2 499999999999999999999999
Q ss_pred CeEEEEEecccC
Q 012831 404 GARVLVKPYREK 415 (455)
Q Consensus 404 Gr~v~Vk~a~~k 415 (455)
||.|+..+...|
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999998876654
No 103
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.61 E-value=0.008 Score=51.59 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=47.7
Q ss_pred CHHHHHHHhhccCCceeEE-------------eeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCe-EEEEEeccc
Q 012831 352 TEDDVSNYFNTYGPVDDVR-------------IPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA-RVLVKPYRE 414 (455)
Q Consensus 352 teedLr~~Fs~fG~I~~V~-------------I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr-~v~Vk~a~~ 414 (455)
....|-++|++||+|.+.. ++. ....--|+|+++.+|++||.+ |+..++|. .+-|++.++
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV~~~~~ 91 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGVKPCDP 91 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEEEE-HH
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEEEEcHH
Confidence 5678889999999999885 333 567899999999999999999 99999985 555777754
No 104
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.61 E-value=0.0011 Score=40.00 Aligned_cols=19 Identities=32% Similarity=0.945 Sum_probs=16.9
Q ss_pred ccccccCcccCCCCCCccccC
Q 012831 185 TCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 185 pC~Yf~rG~Ck~G~sCry~Hg 205 (455)
||+||.. |++|++|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 6998876 999999999993
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.007 Score=64.60 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=67.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhh-ccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeE----cCeE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFN-TYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFV----CGAR 406 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs-~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I----~Gr~ 406 (455)
...+|||||+ ||.-++.++|..+|+ .||-|.-|-|-.| ..+|-|=|+|.+..+--+||.+ .-..| -.++
T Consensus 368 DprrTVFVGg-vprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa-rFvql~h~d~~KR 445 (520)
T KOG0129|consen 368 DPRRTVFVGG-LPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA-RFVQLDHTDIDKR 445 (520)
T ss_pred CccceEEecC-CCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-heEEEecccccee
Confidence 4678999999 999999999999999 8999999999888 3789999999999999999987 22222 2368
Q ss_pred EEEEecccCcc
Q 012831 407 VLVKPYREKSK 417 (455)
Q Consensus 407 v~Vk~a~~k~k 417 (455)
|+||++.=...
T Consensus 446 VEIkPYv~eDq 456 (520)
T KOG0129|consen 446 VEIKPYVMEDQ 456 (520)
T ss_pred eeecceecccc
Confidence 99999883333
No 106
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.60 E-value=0.001 Score=71.13 Aligned_cols=77 Identities=21% Similarity=0.370 Sum_probs=68.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..+|+|+-- +....++-+|.++|+.+|+|.+|+|+.| +++|.|+|.|-+.+.+-.||.. .|..+.|..|.|+..
T Consensus 178 d~Rtvf~~q-la~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 178 DQRTVFCMQ-LARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLS 255 (549)
T ss_pred hHHHHHHHH-HhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEeccc
Confidence 457888888 7788999999999999999999999998 5899999999999999999965 899999999999876
Q ss_pred ccC
Q 012831 413 REK 415 (455)
Q Consensus 413 ~~k 415 (455)
...
T Consensus 256 Eae 258 (549)
T KOG0147|consen 256 EAE 258 (549)
T ss_pred HHH
Confidence 543
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.43 E-value=0.0025 Score=68.50 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=73.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
...+||||+ |+..++++.+++....||.+..-.++.| -++||||..|.+......|++.+|+..+.++.+.|..|
T Consensus 288 ~~~ki~v~~-lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGG-LPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhcc-CcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 456999999 9999999999999999999999988876 48999999999999999999999999999999999988
Q ss_pred ccCcc
Q 012831 413 REKSK 417 (455)
Q Consensus 413 ~~k~k 417 (455)
..-.+
T Consensus 367 ~~g~~ 371 (500)
T KOG0120|consen 367 IVGAS 371 (500)
T ss_pred hccch
Confidence 76543
No 108
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.27 E-value=0.0018 Score=67.59 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=54.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----------C-------CCCeEEEEECCHHHHHHHHHhcC
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----------Q-------KRMFGFVTFASADTVKMILAKGN 398 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----------k-------~RGfaFVtF~~~e~A~~Al~~ln 398 (455)
-.+++|.+.+ |+.+-.-+.|.++|+.+|.|..|+|... . .+-+|+|+|+..+.|.+|.+.++
T Consensus 229 l~srtivaen-LP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAEN-LPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEec-CCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 4789999999 8988888999999999999999999853 1 25689999999999999999874
No 109
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.23 E-value=0.016 Score=59.28 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=63.3
Q ss_pred CcceEEEeCCCCC---CCC-------HHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeE
Q 012831 337 GSRQIYLTFPAES---TFT-------EDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGAR 406 (455)
Q Consensus 337 ~~rkIfVg~~l~~---~~t-------eedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~ 406 (455)
..++|.+.++... ..+ .++|++--++||.|..|.|--....|.+-|.|.+.++|+.+|+.|+|..++||.
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 4568888884321 223 456666688999999996654468999999999999999999999999999999
Q ss_pred EEEEecccC
Q 012831 407 VLVKPYREK 415 (455)
Q Consensus 407 v~Vk~a~~k 415 (455)
|....+..+
T Consensus 344 l~A~i~DG~ 352 (382)
T KOG1548|consen 344 LTASIWDGK 352 (382)
T ss_pred EEEEEeCCc
Confidence 998876654
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.17 E-value=0.011 Score=63.62 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=52.8
Q ss_pred HHHHHHhhccCCceeEEeecc-------CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 354 DDVSNYFNTYGPVDDVRIPCQ-------QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 354 edLr~~Fs~fG~I~~V~I~~d-------k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
|+|+.-+++||.|..|.|+.+ -.-|.-||+|++.+++++|.++|+|..++||.|...++.+.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 344555689999999999976 24577999999999999999999999999999998887654
No 111
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.02 E-value=0.0058 Score=62.61 Aligned_cols=83 Identities=13% Similarity=0.231 Sum_probs=70.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCcee--------EEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEc
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD--------VRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVC 403 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~--------V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~ 403 (455)
...-+|||-+ ++..+++++|.++|.++|.|.. |.|-+| +.||=|-|+|+++..|++|+..++...++
T Consensus 64 s~~~ti~v~g-~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWG-CPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeec-cCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 3456999999 8999999999999999998863 333333 58899999999999999999999999999
Q ss_pred CeEEEEEecccCccch
Q 012831 404 GARVLVKPYREKSKLV 419 (455)
Q Consensus 404 Gr~v~Vk~a~~k~k~~ 419 (455)
|..|+|..|..+....
T Consensus 143 gn~ikvs~a~~r~~ve 158 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGVE 158 (351)
T ss_pred CCCchhhhhhhccCcc
Confidence 9999998888776543
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.015 Score=62.09 Aligned_cols=58 Identities=22% Similarity=0.421 Sum_probs=49.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-------CCCC---eEEEEECCHHHHHHHHHh
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-------QKRM---FGFVTFASADTVKMILAK 396 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-------k~RG---faFVtF~~~e~A~~Al~~ 396 (455)
-++|||||+ |+++++|+.|...|.+||.+. |..+.. ..+| |+|+.|+++..+++.+.+
T Consensus 258 ~S~KVFvGG-lp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGG-LPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecC-CCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 578999999 999999999999999999864 445521 3577 999999999999988766
No 113
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.73 E-value=0.0059 Score=60.15 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=59.5
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---------C-----CCCe--EEEEECCHHHHHHHHHhcCCe
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---------Q-----KRMF--GFVTFASADTVKMILAKGNPH 400 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---------k-----~RGf--aFVtF~~~e~A~~Al~~ln~~ 400 (455)
..--||+++ +|..+....||++|++||.|-.|.+... + ...| |+|.|.+...|+++.+.+|+.
T Consensus 73 k~GVvylS~-IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSN-IPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEecc-CCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 345799999 7999999999999999999999998864 0 1122 999999999999999999999
Q ss_pred eEcCeE
Q 012831 401 FVCGAR 406 (455)
Q Consensus 401 ~I~Gr~ 406 (455)
.|+|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999974
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.69 E-value=0.054 Score=49.52 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=53.9
Q ss_pred CCCCCcceEEEeCCCC------CCCCH---HHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEc
Q 012831 333 PIVTGSRQIYLTFPAE------STFTE---DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC 403 (455)
Q Consensus 333 ~~~~~~rkIfVg~~l~------~~~te---edLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~ 403 (455)
..+|..-||.|.- .. ..+.+ .+|-+.|.+||+|.-||+.. +-=+|||.+-+.|-+|+.. ++..|+
T Consensus 22 ~~GPpDaTVvVsv-~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v~ 95 (146)
T PF08952_consen 22 SQGPPDATVVVSV-DSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQVN 95 (146)
T ss_dssp ----TT-EEEEEE-CS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEET
T ss_pred hcCCCCceEEEEe-cCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEEC
Confidence 4566777888876 44 13332 25667889999999998876 4589999999999999997 999999
Q ss_pred CeEEEEEeccc
Q 012831 404 GARVLVKPYRE 414 (455)
Q Consensus 404 Gr~v~Vk~a~~ 414 (455)
|+.+.|+.-.|
T Consensus 96 g~~l~i~LKtp 106 (146)
T PF08952_consen 96 GRTLKIRLKTP 106 (146)
T ss_dssp TEEEEEEE---
T ss_pred CEEEEEEeCCc
Confidence 99999987555
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.63 E-value=0.019 Score=59.39 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=62.9
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCcee---EEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDD---VRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~---V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
..-|-+.+ ||+..+.+||-.+|..|-.-++ |.++.+ +..|=|||+|.+.|.|.+|..+.+++....|-|+|-.
T Consensus 280 kdcvRLRG-LPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRG-LPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecC-CChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 44688899 9999999999999998865433 666655 6779999999999999999988777777899999987
Q ss_pred ccc
Q 012831 412 YRE 414 (455)
Q Consensus 412 a~~ 414 (455)
+.-
T Consensus 359 ~S~ 361 (508)
T KOG1365|consen 359 CSV 361 (508)
T ss_pred ccH
Confidence 653
No 116
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.60 E-value=0.012 Score=57.06 Aligned_cols=65 Identities=11% Similarity=0.239 Sum_probs=51.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeE
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV 402 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I 402 (455)
...||||.| |..++||++|+.+|+.|--...++|-....--.|||.|++.+.|..|+..+.+..|
T Consensus 209 acstlfian-l~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIAN-LGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhc-cCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 456999999 99999999999999999777777765422223699999888888888887766655
No 117
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.38 E-value=0.0059 Score=63.48 Aligned_cols=24 Identities=46% Similarity=1.218 Sum_probs=23.2
Q ss_pred CCcccccccCcccCCCCCCccccC
Q 012831 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 182 ~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
..|||.||-.|.|+-|.+|||.||
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG 162 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHG 162 (486)
T ss_pred hhccchHhhccccccCcccccccC
Confidence 579999999999999999999999
No 118
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=95.26 E-value=0.053 Score=50.75 Aligned_cols=99 Identities=22% Similarity=0.372 Sum_probs=68.0
Q ss_pred CccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHH
Q 012831 252 PISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKY 321 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~ 321 (455)
.+.|.+||.. +|.+||.|..+. +..+ +.+++++|++||.|. +++.++
T Consensus 117 ~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~-------------------~~~d----~~~~~~~g~~~v~f~~~~~~~~a 173 (306)
T COG0724 117 TLFVGNLPYDVTEEDLRELFKKFGPVKRVR-------------------LVRD----RETGKSRGFAFVEFESEESAEKA 173 (306)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCceeEEE-------------------eeec----cccCccCceEEEEecCHHHHHHH
Confidence 4455555543 799999996655 4454 478999999999996 455555
Q ss_pred HhhCCC-----------C--------CCCC----------------CCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCc
Q 012831 322 LENRNE-----------R--------SDPG----------------PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPV 366 (455)
Q Consensus 322 ~~~r~~-----------r--------~d~~----------------~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I 366 (455)
+..-.. . .... ........+++++ ++..++..++...|..+|.+
T Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 252 (306)
T COG0724 174 IEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGN-LPLKTAEEELADLFKSRGDI 252 (306)
T ss_pred HHHcCCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccc-cccccchhHHHHhccccccc
Confidence 442110 0 0000 0112456899999 89999999999999999999
Q ss_pred eeEEeecc
Q 012831 367 DDVRIPCQ 374 (455)
Q Consensus 367 ~~V~I~~d 374 (455)
..+.+...
T Consensus 253 ~~~~~~~~ 260 (306)
T COG0724 253 VRASLPPS 260 (306)
T ss_pred eeeeccCC
Confidence 88777764
No 119
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=95.02 E-value=0.021 Score=58.19 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=28.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
.|+|||+|++++-+..| .-|+|||||+|. +|++|+...
T Consensus 116 MF~kfG~VldVEIIfNE-------------------------RGSKGFGFVTmen~~dadRARa~ 155 (376)
T KOG0125|consen 116 MFEKFGKVLDVEIIFNE-------------------------RGSKGFGFVTMENPADADRARAE 155 (376)
T ss_pred HHHhhCceeeEEEEecc-------------------------CCCCccceEEecChhhHHHHHHH
Confidence 59999999999822222 237999999995 688887654
No 120
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.95 E-value=0.053 Score=56.66 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=67.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCe-EEEEEecc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA-RVLVKPYR 413 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr-~v~Vk~a~ 413 (455)
.|.+.++.+.+ +|..++||++++.|..-|-..+...-+.+.|-+|.+.+.+.|+|-.|+..++.|.+.+. .++|.+.+
T Consensus 411 ~PpsatlHlsn-ip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 411 FPPSATLHLSN-IPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CCchhheeecc-CCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 35778999999 89999999999999999988877777767777999999999999999999888888765 88888765
No 121
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=94.90 E-value=0.018 Score=55.37 Aligned_cols=39 Identities=31% Similarity=0.421 Sum_probs=32.3
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
-|+|||+|-++. |-+| +.|..++||+||.|- .||+.|++
T Consensus 33 vFekYG~vgDVy-------------------IPrd----r~Tr~sRgFaFVrf~~k~daedA~d 73 (256)
T KOG4207|consen 33 VFEKYGRVGDVY-------------------IPRD----RYTRQSRGFAFVRFHDKRDAEDALD 73 (256)
T ss_pred HHHHhCccccee-------------------cccc----cccccccceeEEEeeecchHHHHHH
Confidence 599999999876 5666 788999999999994 57777776
No 122
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=94.82 E-value=0.03 Score=50.89 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=31.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +..+ +.+++++||+||.|. ++|.+++.
T Consensus 54 ~F~~~G~I~~v~-------------------i~~d----~~tg~~kGfaFV~F~~~e~A~~Al~ 94 (144)
T PLN03134 54 AFAHFGDVVDAK-------------------VIVD----RETGRSRGFGFVNFNDEGAATAAIS 94 (144)
T ss_pred HHhcCCCeEEEE-------------------EEec----CCCCCcceEEEEEECCHHHHHHHHH
Confidence 689999998876 4555 457899999999996 67778876
No 123
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.80 E-value=0.037 Score=59.85 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=49.8
Q ss_pred HHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEc-CeEEEEEecc
Q 012831 355 DVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVC-GARVLVKPYR 413 (455)
Q Consensus 355 dLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~-Gr~v~Vk~a~ 413 (455)
-|..+|+++|+|....+|.+ ..+||.|+.|++..+|+.|++.+||+.++ .++..|...+
T Consensus 80 vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 80 VLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLFK 142 (698)
T ss_pred HHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeehhh
Confidence 35578999999999999976 68999999999999999999999998885 4566665443
No 124
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=94.78 E-value=0.02 Score=46.28 Aligned_cols=49 Identities=29% Similarity=0.430 Sum_probs=39.2
Q ss_pred HHHHhhhhccCCCchhhhhhhhhcc-cchhHHhhCCchHHHHHHHHHHHHH
Q 012831 8 RIVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAE 57 (455)
Q Consensus 8 ~~v~~ri~~~~p~~~~ki~g~ll~~-e~~m~rla~~p~~~~~~~~~~ak~~ 57 (455)
..+|.+|++++|++|.||-|+||=- ..|++.|=-.| .+|+..|..|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLLe~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLLEMDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHhcCCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 4689999999999999999999875 67788775554 6677777777543
No 125
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=94.64 E-value=0.035 Score=43.88 Aligned_cols=50 Identities=28% Similarity=0.480 Sum_probs=37.2
Q ss_pred HHHHhhhhccCCCchhhhhhhhhcc-cchhHHhhCCchHHHHHHHHHHHHHH
Q 012831 8 RIVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAEL 58 (455)
Q Consensus 8 ~~v~~ri~~~~p~~~~ki~g~ll~~-e~~m~rla~~p~~~~~~~~~~ak~~l 58 (455)
.-+|.+|++++|+.|.||-|+||=- -.|++.| +..+.+|.+-|..|-.-|
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLEmd~~ell~l-le~~~~L~~kv~EA~~vl 61 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLEMDNSELLHL-LESPELLRSKVDEALEVL 61 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeCCCHHHHHHH-hcCHHHHHHHHHHHHHHH
Confidence 3589999999999999999998865 5666666 555666666666665433
No 126
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=94.17 E-value=0.021 Score=58.26 Aligned_cols=27 Identities=48% Similarity=1.053 Sum_probs=24.2
Q ss_pred cCCCCcccccccC-cccCCCCCCccccC
Q 012831 179 AELPVKTCHYFNK-GFCKHGSNCRYYHG 205 (455)
Q Consensus 179 ~~~~~kpC~Yf~r-G~Ck~G~sCry~Hg 205 (455)
....-++|.+|.+ |+|+.|..|+|.|+
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~ 200 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHG 200 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCC
Confidence 4567889998888 99999999999999
No 127
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.04 E-value=0.23 Score=51.64 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=66.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
...-+-|-++-...+.-+.|-++|-.||.|+.|+.++- +.|-|.|+..+..++++|+..+|+..+-|.+|.|+..+-
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 45677888833467778899999999999999999984 478999999999999999999999999999999987663
No 128
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.83 E-value=0.031 Score=55.15 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=49.3
Q ss_pred HHHHHHhh-ccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 354 DDVSNYFN-TYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 354 edLr~~Fs-~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
++|-..|+ +||+|+++.|-.+ .-+|=.+|.|..+|+|++|++.+|+-.+.|++|......
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 33444444 9999999977664 568889999999999999999999999999999876543
No 129
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=93.55 E-value=0.092 Score=52.99 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=28.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEccccHH
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAP 319 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~eda~ 319 (455)
+|++||.|.... +.++ ++|++++||+||+|..+..
T Consensus 121 eF~~YG~Ikrir-------------------lV~d----~vTgkskGYAFIeye~erd 155 (335)
T KOG0113|consen 121 EFEKYGPIKRIR-------------------LVRD----KVTGKSKGYAFIEYEHERD 155 (335)
T ss_pred HHHhcCcceeEE-------------------Eeee----cccCCccceEEEEeccHHH
Confidence 699999998765 5566 6899999999999986544
No 130
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.45 E-value=0.41 Score=37.67 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=45.2
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcc---CCceeEEeeccCCCCeEEEEECCHHHHHHHHHhc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTY---GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~f---G~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~l 397 (455)
..+|+|.| + .+++.+||+.||..| .....|..+-|.+ +=|.|.+.+.|.+||.+|
T Consensus 5 peavhirG-v-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRG-V-DELSTDDIKAYFSEYFDEEGPFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEc-C-CCCCHHHHHHHHHHhcccCCCceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 45899999 4 678999999999999 2356788887753 789999999999999763
No 131
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.91 E-value=0.11 Score=53.41 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=59.4
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCc--eeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPV--DDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I--~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
.-.+|||| |-|.+|++||.+....-|-- .+++...+ ++||||.|...+..++++.++.+...+|.|..-.|-.
T Consensus 80 k~~~YvGN-L~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGN-LLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecc-eeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 34799999 78888888888887666533 33443333 6999999999999999999999999999998766665
Q ss_pred cc
Q 012831 412 YR 413 (455)
Q Consensus 412 a~ 413 (455)
+.
T Consensus 159 ~N 160 (498)
T KOG4849|consen 159 YN 160 (498)
T ss_pred cc
Confidence 54
No 132
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=92.55 E-value=0.13 Score=50.57 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=25.2
Q ss_pred eeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 291 KLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 291 ~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
.+|++| +.||.++||+||+|. ++|.+++..
T Consensus 219 vylard----K~TG~~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 219 VYLARD----KETGLSKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred eEEEEc----cccCcccceEEEEEecHHHHHHHHHH
Confidence 348888 678999999999995 789888874
No 133
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=92.35 E-value=0.41 Score=49.78 Aligned_cols=70 Identities=19% Similarity=0.080 Sum_probs=59.4
Q ss_pred CCCCCHHHHHHHhhccCCceeEEeeccCCCC-eEEEEECCHHHHHHHHHhcCCeeEcC--eEEEEEecccCccch
Q 012831 348 ESTFTEDDVSNYFNTYGPVDDVRIPCQQKRM-FGFVTFASADTVKMILAKGNPHFVCG--ARVLVKPYREKSKLV 419 (455)
Q Consensus 348 ~~~~teedLr~~Fs~fG~I~~V~I~~dk~RG-faFVtF~~~e~A~~Al~~ln~~~I~G--r~v~Vk~a~~k~k~~ 419 (455)
-+.+|.+-|..+--..|+|..|.|.+ +.| -|.|+|++.+.|++|.+.||+..|.. -.++|.+|+|.+-..
T Consensus 131 ~YpItvDVly~Icnp~GkVlRIvIfk--kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV 203 (494)
T KOG1456|consen 131 QYPITVDVLYTICNPQGKVLRIVIFK--KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNV 203 (494)
T ss_pred ccccchhhhhhhcCCCCceEEEEEEe--ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeee
Confidence 46889999999999999999998887 344 59999999999999999999999854 477888898865433
No 134
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.31 E-value=0.33 Score=48.99 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=51.7
Q ss_pred HHHHHHHhhccCCceeEEeecc-----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 353 EDDVSNYFNTYGPVDDVRIPCQ-----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 353 eedLr~~Fs~fG~I~~V~I~~d-----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
|+++++-.++||.|..|.|... .-.---||.|...++|-+|+-.||+..++||.|...++.-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5778888999999999977653 1122389999999999999999999999999998887653
No 135
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.07 E-value=0.097 Score=49.54 Aligned_cols=44 Identities=20% Similarity=0.418 Sum_probs=35.3
Q ss_pred ccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEccccHH
Q 012831 253 ISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAP 319 (455)
Q Consensus 253 ~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~eda~ 319 (455)
+.|++||+. -|++||+|+++. ++|| +-||+|+||+|+.+.+...
T Consensus 38 Iyiggl~~~LtEgDil~VFSqyGe~vdin-------------------LiRD----k~TGKSKGFaFLcYEDQRS 89 (219)
T KOG0126|consen 38 IYIGGLPYELTEGDILCVFSQYGEIVDIN-------------------LIRD----KKTGKSKGFAFLCYEDQRS 89 (219)
T ss_pred EEECCCcccccCCcEEEEeeccCceEEEE-------------------EEec----CCCCcccceEEEEecCccc
Confidence 466777765 689999999876 8898 5689999999998876543
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=91.88 E-value=0.6 Score=51.97 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=61.7
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCce-eEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVD-DVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~-~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
.+-|-+-+ .+++++-+||-+||.-|-.+- +|++-++ ..-|=+-|-|++.++|.+|...+++..|..+.|.+..
T Consensus 867 p~V~~~~n-~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNN-FPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecC-CCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34677888 899999999999999996664 4555553 4668899999999999999999999999999988754
No 137
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=91.53 E-value=0.21 Score=37.93 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=28.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. ++++ ..++.+|++||.|. ++|.+++.
T Consensus 18 ~f~~~g~i~~~~-------------------~~~~-----~~~~~~~~a~V~F~~~~~a~~a~~ 57 (70)
T PF00076_consen 18 FFSQFGKIESIK-------------------VMRN-----SSGKSKGYAFVEFESEEDAEKALE 57 (70)
T ss_dssp HHHTTSTEEEEE-------------------EEEE-----TTSSEEEEEEEEESSHHHHHHHHH
T ss_pred HHHHhhhccccc-------------------cccc-----ccccccceEEEEEcCHHHHHHHHH
Confidence 689999997765 2222 35778999999996 67888876
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=91.28 E-value=0.2 Score=52.71 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=62.4
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcC-CeeEcCeEEEEEecccCcc
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN-PHFVCGARVLVKPYREKSK 417 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln-~~~I~Gr~v~Vk~a~~k~k 417 (455)
.++|+|+ |...++..||+.+|..-----.-.++. .-||+||...+..-|.+|++.++ ...+.|+++.|....+|+.
T Consensus 2 nklyign-L~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGN-LSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred Ccccccc-cCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 4799999 999999999999997541000111111 46999999999999999999976 5578999999999888876
Q ss_pred chhHH
Q 012831 418 LVDRK 422 (455)
Q Consensus 418 ~~~~~ 422 (455)
+..+.
T Consensus 79 rsrk~ 83 (584)
T KOG2193|consen 79 RSRKI 83 (584)
T ss_pred Hhhhh
Confidence 65553
No 139
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.25 E-value=0.46 Score=48.20 Aligned_cols=61 Identities=26% Similarity=0.333 Sum_probs=51.0
Q ss_pred HHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCe-EEEEEecccCc
Q 012831 353 EDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA-RVLVKPYREKS 416 (455)
Q Consensus 353 eedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr-~v~Vk~a~~k~ 416 (455)
..-|-+.|++||+|.+..... .-.+=.|.|.+.-+|++||.+ |+.+|+|- .|-|+....|.
T Consensus 210 ~s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 210 VSIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred hhHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHH
Confidence 467889999999999987763 566999999999999999999 99999985 45688766654
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.16 E-value=0.14 Score=53.23 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=53.7
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcc----CCceeEEeec--c-CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNTY----GPVDDVRIPC--Q-QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~f----G~I~~V~I~~--d-k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
-|-+.+ ||+++|+.++.++|.+- |-++.|-.+. | +.-|=|||.|..++.|+.||.+ +...|+-|-|++-+
T Consensus 163 ivRmRG-LPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 163 IVRMRG-LPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred EEEecC-CCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 355678 89999999999999732 3444554443 2 6789999999999999999998 77777777666543
No 141
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.96 E-value=0.083 Score=54.75 Aligned_cols=24 Identities=42% Similarity=1.020 Sum_probs=22.5
Q ss_pred cccccccCcccCCCCCCccccCCcc
Q 012831 184 KTCHYFNKGFCKHGSNCRYYHGLVS 208 (455)
Q Consensus 184 kpC~Yf~rG~Ck~G~sCry~Hg~~~ 208 (455)
.+|+||.+|+|+.|.-|||.|. +|
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~-~~ 32 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHS-LP 32 (344)
T ss_pred hhhhhcccccccccceeeeecc-Cc
Confidence 7999999999999999999998 55
No 142
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=90.79 E-value=0.15 Score=56.58 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=66.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCcee-EEee---ccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD-VRIP---CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~-V~I~---~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
....-|||.. |+..+++.++-++|..--.|++ |.|- .++.++-|||.|..++++.+|+..-..+.++.+.|+|..
T Consensus 432 ~ag~~lyv~~-lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQ-LPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEecc-CCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 3566899999 9999999999999998878888 5554 357889999999999988888877678899999999986
Q ss_pred cccCc
Q 012831 412 YREKS 416 (455)
Q Consensus 412 a~~k~ 416 (455)
...+.
T Consensus 511 i~~~~ 515 (944)
T KOG4307|consen 511 IADYA 515 (944)
T ss_pred hhhHH
Confidence 55443
No 143
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.59 E-value=0.058 Score=61.10 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=64.2
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
.++|||+|+ ++..+++.+|+..|..+|.|++|.|-.- +---||||.|.+...+-.|...+.+..|..-.+++....
T Consensus 371 atrTLf~Gn-l~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGN-LDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcC-cccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 678999999 9999999999999999999999998764 223489999999999888888776666655566666665
Q ss_pred cC
Q 012831 414 EK 415 (455)
Q Consensus 414 ~k 415 (455)
++
T Consensus 450 ~k 451 (975)
T KOG0112|consen 450 PK 451 (975)
T ss_pred cc
Confidence 53
No 144
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.96 E-value=1 Score=42.76 Aligned_cols=62 Identities=16% Similarity=0.050 Sum_probs=46.5
Q ss_pred CHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcC--CeeEcCeEEEEEecccC
Q 012831 352 TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN--PHFVCGARVLVKPYREK 415 (455)
Q Consensus 352 teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln--~~~I~Gr~v~Vk~a~~k 415 (455)
..+.|+++|..|+.+....... +-+=..|.|.+.+.|.+|...++ +..+.|..++|..+.+-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3588999999999999887776 44458999999999999999988 89999999999888543
No 145
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=89.82 E-value=0.18 Score=31.91 Aligned_cols=19 Identities=32% Similarity=0.936 Sum_probs=17.3
Q ss_pred ccccccCc-ccCCCCCCcccc
Q 012831 185 TCHYFNKG-FCKHGSNCRYYH 204 (455)
Q Consensus 185 pC~Yf~rG-~Ck~G~sCry~H 204 (455)
.|.|..+| .|+. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 59999988 9988 8999999
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.32 E-value=0.69 Score=48.39 Aligned_cols=73 Identities=22% Similarity=0.346 Sum_probs=57.9
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-------CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-------QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-------k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
.-|-|.| +....|.+++..+|.-.|+|.+++|... -....+||.|.+...+..|-..-|..+|+-. +.|-+
T Consensus 8 ~vIqvan-ispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdra-liv~p 85 (479)
T KOG4676|consen 8 GVIQVAN-ISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRA-LIVRP 85 (479)
T ss_pred ceeeecc-cCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeee-EEEEe
Confidence 3788999 8999999999999999999999988763 2345799999999999888776566666554 44544
Q ss_pred cc
Q 012831 412 YR 413 (455)
Q Consensus 412 a~ 413 (455)
+.
T Consensus 86 ~~ 87 (479)
T KOG4676|consen 86 YG 87 (479)
T ss_pred cC
Confidence 43
No 147
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.06 E-value=0.056 Score=60.89 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=58.0
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEee----ccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIP----CQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~----~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
..|+||.+ ++..+.+++|+..|+.+|.|+.++|. .++.||.|+|.|..++.+.+|++....+.+.-..+-|
T Consensus 667 ~~~~fvsn-l~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 667 LIKIFVSN-LSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHhh-cchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 34899999 89999999999999999999998877 2368999999999999999999875455444333333
No 148
>smart00361 RRM_1 RNA recognition motif.
Probab=88.99 E-value=0.67 Score=36.40 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=17.9
Q ss_pred cCCCccceeEEcc--ccHHHHHhh
Q 012831 303 IDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 303 tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+++++|++||.|. ++|.+++..
T Consensus 33 ~~~~rG~~fV~f~~~~dA~~A~~~ 56 (70)
T smart00361 33 ENHKRGNVYITFERSEDAARAIVD 56 (70)
T ss_pred CCCCcEEEEEEECCHHHHHHHHHH
Confidence 3889999999996 577787764
No 149
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=88.93 E-value=0.27 Score=48.76 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=60.0
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcC----CeeEcCeEEEEEe
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGN----PHFVCGARVLVKP 411 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln----~~~I~Gr~v~Vk~ 411 (455)
.-|||.+ +..-++.+.+..-|+.||+|+...+..| +.-+=++|.|...-.+.+|+...+ ...+.++.+.|.+
T Consensus 32 a~l~V~n-l~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVN-LMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEe-cchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 5799999 8999999999999999999998766655 566779999999999999988753 4455677776655
Q ss_pred cc
Q 012831 412 YR 413 (455)
Q Consensus 412 a~ 413 (455)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 150
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=87.94 E-value=0.16 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.846 Sum_probs=21.1
Q ss_pred CcccccccCcccCCCCC-CccccC
Q 012831 183 VKTCHYFNKGFCKHGSN-CRYYHG 205 (455)
Q Consensus 183 ~kpC~Yf~rG~Ck~G~s-Cry~Hg 205 (455)
.-+||=|.||.|+||+. |||+|=
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 35899999999999999 999996
No 151
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.20 E-value=0.34 Score=49.62 Aligned_cols=79 Identities=11% Similarity=0.161 Sum_probs=60.0
Q ss_pred cceEEEeCCCCCCC-CHHHHH--HHhhccCCceeEEeeccC----CCC---eEEEEECCHHHHHHHHHhcCCeeEcCeEE
Q 012831 338 SRQIYLTFPAESTF-TEDDVS--NYFNTYGPVDDVRIPCQQ----KRM---FGFVTFASADTVKMILAKGNPHFVCGARV 407 (455)
Q Consensus 338 ~rkIfVg~~l~~~~-teedLr--~~Fs~fG~I~~V~I~~dk----~RG---faFVtF~~~e~A~~Al~~ln~~~I~Gr~v 407 (455)
.+.+||-+ ++... .|..|+ +||.+||.|..|.+-.+. +-+ -++|||...|+|..||...++...+|+.+
T Consensus 77 knlvyvvg-l~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVG-LPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhC-CCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 35677777 56544 444454 699999999999887753 111 28999999999999999999999999987
Q ss_pred EEEecccCcc
Q 012831 408 LVKPYREKSK 417 (455)
Q Consensus 408 ~Vk~a~~k~k 417 (455)
+......+-.
T Consensus 156 ka~~gttkyc 165 (327)
T KOG2068|consen 156 KASLGTTKYC 165 (327)
T ss_pred HHhhCCCcch
Confidence 7776666543
No 152
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=87.05 E-value=0.91 Score=49.79 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=62.3
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhh-ccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeE---cCeEEEE
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFN-TYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV---CGARVLV 409 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs-~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I---~Gr~v~V 409 (455)
.+..++-|||.| |-.-+|.-+|+++.. ..|.|++..| |+-|--+||+|.+.++|-+...+|++..+ +++.|-|
T Consensus 440 R~~~SnvlhI~n-LvRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHIDN-LVRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCccceEeeec-ccccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 345678999999 889999999999999 6777877733 45666799999999999999999887766 5677776
Q ss_pred Eecc
Q 012831 410 KPYR 413 (455)
Q Consensus 410 k~a~ 413 (455)
.++.
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 6654
No 153
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=86.76 E-value=0.31 Score=52.75 Aligned_cols=24 Identities=42% Similarity=1.013 Sum_probs=22.3
Q ss_pred CCcccccccCcccCCCCCCccccC
Q 012831 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 182 ~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
..-||-=|.||-|++|.+|.|+||
T Consensus 235 s~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 235 SSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred cCccCcccccCCCCCCCccccccc
Confidence 456999999999999999999999
No 154
>PLN03120 nucleic acid binding protein; Provisional
Probab=85.45 E-value=0.83 Score=45.66 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=27.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|+.||+|..++ +.++ +..+||+||+|. +++++++..
T Consensus 24 fFS~~G~I~~V~-------------------I~~d-------~~~~GfAFVtF~d~eaAe~AllL 62 (260)
T PLN03120 24 FFSFSGDIEYVE-------------------MQSE-------NERSQIAYVTFKDPQGAETALLL 62 (260)
T ss_pred HHHhcCCeEEEE-------------------Eeec-------CCCCCEEEEEeCcHHHHHHHHHh
Confidence 799999999876 3344 125799999996 567777753
No 155
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.22 E-value=3.7 Score=37.72 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=56.3
Q ss_pred CCCcceEEEeCCCCCCCC-HHHHHH---HhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFT-EDDVSN---YFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~t-eedLr~---~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
.+...||.|.. +..++. .+|++. ..+.||+|++|.+.- |.-|.|+|.+..+|=+|+.+... ..-|..+.+.
T Consensus 83 epPMsTIVVRW-lkknm~~~edl~sV~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRW-LKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeeh-hhhcCChHHHHHHHHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 45677899988 676653 355554 467899999998765 66799999999999999998544 6677788887
Q ss_pred ec
Q 012831 411 PY 412 (455)
Q Consensus 411 ~a 412 (455)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 74
No 156
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=85.09 E-value=3.6 Score=34.43 Aligned_cols=56 Identities=18% Similarity=0.317 Sum_probs=41.9
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcC
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN 398 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln 398 (455)
+..-.||++ |.++...||.++|+.||.|.-- .+-| .-|||.....+.|..|+..+.
T Consensus 8 RdHVFhltF--PkeWK~~DI~qlFspfG~I~Vs-Wi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTF--PKEWKTSDIYQLFSPFGQIYVS-WIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE----TT--HHHHHHHCCCCCCEEEE-EECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeC--chHhhhhhHHHHhccCCcEEEE-EEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 445677887 6888999999999999997644 4443 469999999999999888754
No 157
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=84.85 E-value=1.1 Score=43.75 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=59.9
Q ss_pred ceeEEccccHH--HHHhhC-CCCCCCCCCCCCcceEEEeC---CCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCe
Q 012831 309 QHAVILAEDAP--KYLENR-NERSDPGPIVTGSRQIYLTF---PAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMF 379 (455)
Q Consensus 309 ~gfV~f~eda~--k~~~~r-~~r~d~~~~~~~~rkIfVg~---~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGf 379 (455)
|+||.|.+|.. -+++.. +.+. -..+-.+|++.|+ ++...++++.+.+.|+.-|+|+.+++..+ +.|.+
T Consensus 51 Fa~v~f~~E~sv~~a~~L~ng~~l---~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~ 127 (267)
T KOG4454|consen 51 FAYVFFPNENSVQLAGQLENGDDL---EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNF 127 (267)
T ss_pred eeeeecccccchhhhhhhcccchh---ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCc
Confidence 88998876543 222211 1110 1122345666676 45678899999999999999999999986 57889
Q ss_pred EEEEECCHHHHHHHHHhc
Q 012831 380 GFVTFASADTVKMILAKG 397 (455)
Q Consensus 380 aFVtF~~~e~A~~Al~~l 397 (455)
+||++.....+=.++...
T Consensus 128 ~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 128 GFVTYQRLCAVPFALDLY 145 (267)
T ss_pred cchhhhhhhcCcHHhhhh
Confidence 999988877776666653
No 158
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=84.11 E-value=1.1 Score=34.38 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=17.1
Q ss_pred CCCccceeEEcc--ccHHHHHhh
Q 012831 304 DRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 304 grsrG~gfV~f~--eda~k~~~~ 324 (455)
++++|++||.|. ++|.+++..
T Consensus 36 ~~~~~~a~v~f~~~~~a~~al~~ 58 (70)
T PF14259_consen 36 GQSRGFAFVEFSSEEDAKRALEL 58 (70)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHH
T ss_pred cccCCEEEEEeCCHHHHHHHHHH
Confidence 578999999996 577787764
No 159
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=82.79 E-value=2.6 Score=45.26 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
.|++.|.|+..+ ++.| +.+|+++||||+.|. +++.+++.
T Consensus 38 ~~~~~g~v~s~~-------------------~v~D----~~tG~~~G~~f~~~~~~~~~~~a~~ 78 (435)
T KOG0108|consen 38 IFSGVGPVLSFR-------------------LVYD----RETGKPKGFGFCEFTDEETAERAIR 78 (435)
T ss_pred HHhccCccceee-------------------eccc----ccCCCcCceeeEecCchhhHHHHHH
Confidence 577777777654 4555 788999999999996 46667765
No 160
>smart00360 RRM RNA recognition motif.
Probab=82.58 E-value=2 Score=31.43 Aligned_cols=39 Identities=33% Similarity=0.446 Sum_probs=27.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+. +.+. +.+++++|++||.|. ++|.+++.
T Consensus 16 ~f~~~g~v~~~~-------------------i~~~----~~~~~~~~~a~v~f~~~~~a~~a~~ 56 (71)
T smart00360 16 LFSKFGKIESVR-------------------LVRD----KDTGKSKGFAFVEFESEEDAEKALE 56 (71)
T ss_pred HHHhhCCEeEEE-------------------EEeC----CCCCCCCceEEEEeCCHHHHHHHHH
Confidence 578899887754 2222 225788999999996 56667765
No 161
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=81.85 E-value=0.51 Score=47.63 Aligned_cols=21 Identities=33% Similarity=1.159 Sum_probs=20.3
Q ss_pred ccccccCcccCCCCCCccccC
Q 012831 185 TCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 185 pC~Yf~rG~Ck~G~sCry~Hg 205 (455)
.|-||..|.|..|..|+|+|+
T Consensus 94 vCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 94 VCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHhccCCCCCCcccccch
Confidence 699999999999999999998
No 162
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=80.29 E-value=2 Score=31.83 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=24.0
Q ss_pred HHHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 261 LYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 261 ~yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
..|++||+|.... +.+. .+|++||.|. ++|.+++.
T Consensus 3 ~~f~~fG~V~~i~-------------------~~~~---------~~~~a~V~f~~~~~A~~a~~ 39 (56)
T PF13893_consen 3 KLFSKFGEVKKIK-------------------IFKK---------KRGFAFVEFASVEDAQKAIE 39 (56)
T ss_dssp HHHTTTS-EEEEE-------------------EETT---------STTEEEEEESSHHHHHHHHH
T ss_pred HHhCCcccEEEEE-------------------EEeC---------CCCEEEEEECCHHHHHHHHH
Confidence 4699999998754 1111 1589999996 57777776
No 163
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=79.12 E-value=2.1 Score=41.41 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=13.8
Q ss_pred cccCCCccceeEEcc
Q 012831 301 RLIDRPHGQHAVILA 315 (455)
Q Consensus 301 r~tgrsrG~gfV~f~ 315 (455)
+-||.|+|||||.|.
T Consensus 86 krTGNSKgYAFVEFE 100 (214)
T KOG4208|consen 86 KRTGNSKGYAFVEFE 100 (214)
T ss_pred cccCCcCceEEEEec
Confidence 678999999999996
No 164
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=78.22 E-value=1 Score=45.59 Aligned_cols=23 Identities=39% Similarity=0.791 Sum_probs=21.3
Q ss_pred Ccccccc-cCcccCCCCCCccccC
Q 012831 183 VKTCHYF-NKGFCKHGSNCRYYHG 205 (455)
Q Consensus 183 ~kpC~Yf-~rG~Ck~G~sCry~Hg 205 (455)
.-||+|| .+|.|+.|..|.|.|.
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~ 157 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHI 157 (285)
T ss_pred CCCcccccccceeccCCCCCcccc
Confidence 4599999 8899999999999998
No 165
>PLN03121 nucleic acid binding protein; Provisional
Probab=77.11 E-value=2.3 Score=42.05 Aligned_cols=37 Identities=8% Similarity=0.068 Sum_probs=27.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|+.||+|..++ +.++ ++..|++||+|. ++++.++..
T Consensus 25 fFS~~G~I~~V~-------------------I~~D-------~et~gfAfVtF~d~~aaetAllL 63 (243)
T PLN03121 25 FFSHCGAIEHVE-------------------IIRS-------GEYACTAYVTFKDAYALETAVLL 63 (243)
T ss_pred HHHhcCCeEEEE-------------------EecC-------CCcceEEEEEECCHHHHHHHHhc
Confidence 699999999977 4444 456689999997 456666653
No 166
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=76.49 E-value=1.1 Score=46.30 Aligned_cols=26 Identities=27% Similarity=0.770 Sum_probs=22.9
Q ss_pred CCCCcccccccCcccCCCCCCccccC
Q 012831 180 ELPVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 180 ~~~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
..+-..|+||.+|.|+.|..|-|+|-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 55778899999999999999999996
No 167
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=76.34 E-value=1.1 Score=43.71 Aligned_cols=21 Identities=38% Similarity=1.059 Sum_probs=18.8
Q ss_pred cccc-ccCcccCCCCCCccccC
Q 012831 185 TCHY-FNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 185 pC~Y-f~rG~Ck~G~sCry~Hg 205 (455)
-|+| -+.|.|-.|..|||.|.
T Consensus 208 ycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 208 YCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred EEEEecCCCcccCCceeeeecc
Confidence 5995 47799999999999997
No 168
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=75.06 E-value=1.5 Score=45.31 Aligned_cols=23 Identities=39% Similarity=1.195 Sum_probs=18.9
Q ss_pred CcccccccC-cccCCCCCCccccC
Q 012831 183 VKTCHYFNK-GFCKHGSNCRYYHG 205 (455)
Q Consensus 183 ~kpC~Yf~r-G~Ck~G~sCry~Hg 205 (455)
.++|.||.. |.|.+|..|.|.|+
T Consensus 105 ~rec~ff~~~g~c~~~~~c~y~h~ 128 (325)
T KOG1040|consen 105 MRECKFFSLFGECTNGKDCPYLHG 128 (325)
T ss_pred cccccccccccccccccCCcccCC
Confidence 458996654 99999999999998
No 169
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=74.18 E-value=3.4 Score=36.06 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=33.2
Q ss_pred ccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHH
Q 012831 253 ISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYL 322 (455)
Q Consensus 253 ~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~ 322 (455)
+.|.+||+. -|.+||.|.|.+ +-.+..-+|-+||++. .||++++
T Consensus 21 LyirNLp~~ITseemydlFGkyg~IrQIR--------------------------iG~~k~TrGTAFVVYedi~dAk~A~ 74 (124)
T KOG0114|consen 21 LYIRNLPFKITSEEMYDLFGKYGTIRQIR--------------------------IGNTKETRGTAFVVYEDIFDAKKAC 74 (124)
T ss_pred EEEecCCccccHHHHHHHhhcccceEEEE--------------------------ecCccCcCceEEEEehHhhhHHHHH
Confidence 356666654 789999998865 1123445899999996 5899998
Q ss_pred hh
Q 012831 323 EN 324 (455)
Q Consensus 323 ~~ 324 (455)
.+
T Consensus 75 dh 76 (124)
T KOG0114|consen 75 DH 76 (124)
T ss_pred HH
Confidence 74
No 170
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=73.87 E-value=1.3 Score=42.56 Aligned_cols=24 Identities=29% Similarity=0.963 Sum_probs=21.3
Q ss_pred CCcccc-cccCcccCCCCCCccccC
Q 012831 182 PVKTCH-YFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 182 ~~kpC~-Yf~rG~Ck~G~sCry~Hg 205 (455)
-.-.|. |-.-|||--|.+|+|+|-
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred CcccccchhhcccccCCchhhhhhh
Confidence 345899 889999999999999996
No 171
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=73.38 E-value=1.6 Score=44.57 Aligned_cols=26 Identities=38% Similarity=0.917 Sum_probs=21.9
Q ss_pred CCCCccccccc-CcccCC-CCCCccccC
Q 012831 180 ELPVKTCHYFN-KGFCKH-GSNCRYYHG 205 (455)
Q Consensus 180 ~~~~kpC~Yf~-rG~Ck~-G~sCry~Hg 205 (455)
-+.-..|.+|. .|.|+. |.+|+|.||
T Consensus 129 ~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 129 RYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred cccCCcceeeecCccccccCchhhhcCC
Confidence 45778999655 599999 999999998
No 172
>PLN03213 repressor of silencing 3; Provisional
Probab=72.49 E-value=3.9 Score=44.18 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=25.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEccc----cHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAE----DAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~e----da~k~~~ 323 (455)
-|..||.|..+. +.|. +| ||||||.|.. +..+++.
T Consensus 30 vFSeFGsVkdVE-------------------IpRE------TG--RGFAFVEMssdddaEeeKAIS 68 (759)
T PLN03213 30 IFSPMGTVDAVE-------------------FVRT------KG--RSFAYIDFSPSSTNSLTKLFS 68 (759)
T ss_pred HHHhcCCeeEEE-------------------Eecc------cC--CceEEEEecCCcHHHHHHHHH
Confidence 699999999887 2233 45 8999999963 3556665
No 173
>smart00362 RRM_2 RNA recognition motif.
Probab=72.09 E-value=5.9 Score=28.96 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=15.1
Q ss_pred CCCccceeEEcc--ccHHHHHh
Q 012831 304 DRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 304 grsrG~gfV~f~--eda~k~~~ 323 (455)
+.++|++||.|. ++|.+++.
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~ 57 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIE 57 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHH
Confidence 567899999996 46666665
No 174
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=71.87 E-value=3.5 Score=40.35 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=28.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEc--cccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVIL--AEDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f--~eda~k~~~~ 324 (455)
.|-.||.|.+.+ +.-| -.+++.|||+||+| +|||..++..
T Consensus 30 AFIPFGDI~dIq-------------------iPlD----yesqkHRgFgFVefe~aEDAaaAiDN 71 (298)
T KOG0111|consen 30 AFIPFGDIKDIQ-------------------IPLD----YESQKHRGFGFVEFEEAEDAAAAIDN 71 (298)
T ss_pred ccccccchhhcc-------------------cccc----hhcccccceeEEEeeccchhHHHhhc
Confidence 477899988765 1122 23578899999999 5788777763
No 175
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=67.62 E-value=35 Score=29.77 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=47.9
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcc-CCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNTY-GPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~f-G~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
.+-+.. +++-++-++|..+.+.+ ..|+.++|++| ..|=.+.++|.+.+.|+.-....||..++.
T Consensus 15 ~~~l~v-p~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAV-PPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEe-CcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444 56666677787666665 55678899988 355579999999999999999988887754
No 176
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=67.46 E-value=21 Score=28.48 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHhhccCCce-----eEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 348 ESTFTEDDVSNYFNTYGPVD-----DVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 348 ~~~~teedLr~~Fs~fG~I~-----~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
...++..+|-.++..-+.|. .|+|. ..|.||.-.. +.|+.+++.+++..+.|+++.|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIF----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEe----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45678888888887765554 45553 4689999866 4788889999999999999999875
No 177
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=64.16 E-value=4.1 Score=41.30 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=63.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
...+.|+|. +.+.+.+.+...++..+|.+..+.+... .++|++.|.|+..+.+..++.....+.+.++.+.....
T Consensus 87 ~~~~~f~g~-~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGE-LSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccc-cccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 467999999 8888888888999999998888877653 68999999999999999999985456777776665544
Q ss_pred ccCc
Q 012831 413 REKS 416 (455)
Q Consensus 413 ~~k~ 416 (455)
..+.
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 4433
No 178
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=63.81 E-value=39 Score=26.87 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 349 STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 349 ~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
-.++-++++.-+..|+- .+|. .| ..| =||.|.+.++|+++....++..+-+.++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~I~--~d-~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DRIR--DD-RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-ceEE--ec-CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788999999999964 3333 23 255 489999999999999998888888877654
No 179
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=63.63 E-value=9.2 Score=41.99 Aligned_cols=69 Identities=14% Similarity=0.076 Sum_probs=52.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhc--cCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhc--CCeeEcCeEEE
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNT--YGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG--NPHFVCGARVL 408 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~--fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~l--n~~~I~Gr~v~ 408 (455)
..|+|.|-.-++.++-+|+|+.+|+. +-++.+|..-.+ -=-||||++.++|+.|.+.+ ..++|-|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N---~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN---DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec---CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 45677776668999999999999974 677788877652 23899999999999998764 24556666654
No 180
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.60 E-value=2.9 Score=42.42 Aligned_cols=24 Identities=29% Similarity=0.955 Sum_probs=21.7
Q ss_pred CCcccc-cccCcccCCCCCCccccC
Q 012831 182 PVKTCH-YFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 182 ~~kpC~-Yf~rG~Ck~G~sCry~Hg 205 (455)
.--+|. |---|||.-|.+|+|+|-
T Consensus 185 qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 185 QPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred CchhhhhhHhhCcccccchhhhhhh
Confidence 456899 999999999999999996
No 181
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=60.15 E-value=8.5 Score=42.94 Aligned_cols=73 Identities=8% Similarity=-0.002 Sum_probs=62.5
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..+...++|||+ +...+..+-++.+...+|-|-.+.... |||..|..+.....|+..+....++|..+.++.-
T Consensus 36 ~~~~~~~vfv~~-~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 36 PLPPRDTVFVGN-ISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCCCceeEecc-hhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 345677999999 788888899999999999988876654 9999999999999999998889999988877663
No 182
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=58.75 E-value=7.1 Score=44.77 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=62.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeE--cCeEEEEEeccc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV--CGARVLVKPYRE 414 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I--~Gr~v~Vk~a~~ 414 (455)
...+.++.+ ..-..+...|..+|++||.|.+++..++ -..|.|.|...|.|-.|++++.+..+ -|.+.+|..|+.
T Consensus 297 lqp~~~~~n-n~v~~tSssL~~l~s~yg~v~s~wtlr~--~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 297 LQPKQSLEN-NAVNLTSSSLATLCSDYGSVASAWTLRD--LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred Ccchhhhhc-ccccchHHHHHHHHHhhcchhhheeccc--ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 344666666 6678889999999999999999998874 34699999999999999999776654 688888888875
Q ss_pred Cc
Q 012831 415 KS 416 (455)
Q Consensus 415 k~ 416 (455)
-.
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 43
No 183
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=58.16 E-value=3.9 Score=39.95 Aligned_cols=22 Identities=45% Similarity=1.064 Sum_probs=19.5
Q ss_pred CcccccccCcccCCCCCCccccC
Q 012831 183 VKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 183 ~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
..-|+||--|-|.+ -+|||.|-
T Consensus 261 ipacryfllgkcnn-pncryvhi 282 (377)
T KOG1492|consen 261 IPACRYFLLGKCNN-PNCRYVHI 282 (377)
T ss_pred cchhhhhhhccCCC-CCceEEEE
Confidence 44699999999998 89999996
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=55.87 E-value=13 Score=35.09 Aligned_cols=65 Identities=6% Similarity=0.076 Sum_probs=43.7
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhc-cCCc---eeEEeecc----C--CCCeEEEEECCHHHHHHHHHhcCCeeEc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNT-YGPV---DDVRIPCQ----Q--KRMFGFVTFASADTVKMILAKGNPHFVC 403 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~-fG~I---~~V~I~~d----k--~RGfaFVtF~~~e~A~~Al~~ln~~~I~ 403 (455)
..||.|.. ||+++||+++.+..+. ++.. ..+.-... + .-.-|+|.|.+.+++..-....+++.+.
T Consensus 7 ~~KvVIR~-LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRR-LPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEE-E-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeC-CCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 45999999 9999999999997776 5555 22321111 1 1123999999999999999988887763
No 185
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=53.96 E-value=6 Score=40.70 Aligned_cols=23 Identities=39% Similarity=0.821 Sum_probs=19.9
Q ss_pred CCcccccccCcccCCCCCCccccC
Q 012831 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 182 ~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
-+-=|.=+.+|.|.| .+|||+|.
T Consensus 70 ~v~aC~Ds~kgrCsR-~nCkylHp 92 (331)
T KOG2494|consen 70 RVIACFDSQKGRCSR-ENCKYLHP 92 (331)
T ss_pred eEEEEeccccCccCc-ccceecCC
Confidence 456788899999999 66999998
No 186
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=48.08 E-value=9.1 Score=38.90 Aligned_cols=24 Identities=33% Similarity=0.993 Sum_probs=22.2
Q ss_pred CCcccccccCcccCCCCCCccccC
Q 012831 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 182 ~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
.--+|++|-+|-|+.|..|.|+|+
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred CCcccchhccccCcCCCccccccC
Confidence 445999999999999999999999
No 187
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=47.06 E-value=29 Score=31.58 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=17.7
Q ss_pred cccCCCccceeEEc--cccHHHHHhh
Q 012831 301 RLIDRPHGQHAVIL--AEDAPKYLEN 324 (455)
Q Consensus 301 r~tgrsrG~gfV~f--~eda~k~~~~ 324 (455)
+.+..+=||.||.| .++|..++..
T Consensus 72 r~kktpCGFCFVeyy~~~dA~~Alry 97 (153)
T KOG0121|consen 72 RFKKTPCGFCFVEYYSRDDAEDALRY 97 (153)
T ss_pred cCCcCccceEEEEEecchhHHHHHHH
Confidence 56778899999999 3566655553
No 188
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=46.08 E-value=7.3 Score=38.46 Aligned_cols=21 Identities=33% Similarity=0.958 Sum_probs=20.0
Q ss_pred ccccccCcccCCCCCCccccC
Q 012831 185 TCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 185 pC~Yf~rG~Ck~G~sCry~Hg 205 (455)
.|-.|.-|-|..|..|+|+||
T Consensus 87 vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 87 VCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHhccCccccCchhhhhcc
Confidence 688999999999999999999
No 189
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=46.05 E-value=17 Score=36.81 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=29.0
Q ss_pred CCcceEEEeCCCCCC------------CCHHHHHHHhhccCCceeEEeec
Q 012831 336 TGSRQIYLTFPAEST------------FTEDDVSNYFNTYGPVDDVRIPC 373 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~------------~teedLr~~Fs~fG~I~~V~I~~ 373 (455)
....|||+.+ +|-. -+|+.|+..|+.||.|..|.|+.
T Consensus 147 erpdti~la~-ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAG-IPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecC-CcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3456888888 5531 36788999999999999999983
No 190
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.06 E-value=48 Score=35.78 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=56.9
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcc-CCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTY-GPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~f-G~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
++.|+|=. +|..+|-.||-.|...| -.|.+++|++| ..|=...|+|.+.++|..-.+..||..++.
T Consensus 74 ~~mLcila-VP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILA-VPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEe-ccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77899999 89999999999988765 67889999997 355579999999999999999999887754
No 191
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=42.85 E-value=32 Score=27.17 Aligned_cols=20 Identities=10% Similarity=0.403 Sum_probs=17.3
Q ss_pred HHHHHHhhccCCceeEEeec
Q 012831 354 DDVSNYFNTYGPVDDVRIPC 373 (455)
Q Consensus 354 edLr~~Fs~fG~I~~V~I~~ 373 (455)
.+||++|++.|+|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 68999999999999887653
No 192
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=41.20 E-value=43 Score=38.42 Aligned_cols=83 Identities=11% Similarity=0.197 Sum_probs=47.7
Q ss_pred CccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEE
Q 012831 306 PHGQHAVILA--EDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVT 383 (455)
Q Consensus 306 srG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVt 383 (455)
+||++||++. .+|.+++..-... .. ..++|-|..-+.+-+.+ +.+.|+ |-..|+-+|-
T Consensus 456 ~R~cAfI~M~~RqdA~kalqkl~n~----kv--~~k~Iki~Wa~g~G~ks-e~k~~w-------------D~~lGVt~IP 515 (894)
T KOG0132|consen 456 PRGCAFIKMVRRQDAEKALQKLSNV----KV--ADKTIKIAWAVGKGPKS-EYKDYW-------------DVELGVTYIP 515 (894)
T ss_pred CCceeEEEEeehhHHHHHHHHHhcc----cc--cceeeEEeeeccCCcch-hhhhhh-------------hcccCeeEee
Confidence 6788999874 6888887632210 11 23333333223445544 333333 2356888888
Q ss_pred ECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 384 FASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 384 F~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
++...++..++.. +-+++|-.+...
T Consensus 516 ~~kLt~dl~~~~e--gam~d~~t~~p~ 540 (894)
T KOG0132|consen 516 WEKLTDDLEAWCE--GAMLDGTTGPPE 540 (894)
T ss_pred hHhcCHHHHHhhh--hceecCccCCcc
Confidence 8877777777776 566666555433
No 193
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=39.21 E-value=14 Score=37.76 Aligned_cols=26 Identities=27% Similarity=0.818 Sum_probs=22.2
Q ss_pred CCCCcccc-cccCcccCCCCCCccccC
Q 012831 180 ELPVKTCH-YFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 180 ~~~~kpC~-Yf~rG~Ck~G~sCry~Hg 205 (455)
.|--+||. +.--|||.-|.-|.|.||
T Consensus 271 ~frTePcinwe~sGyc~yg~Rc~F~hg 297 (351)
T COG5063 271 NFRTEPCINWEKSGYCPYGLRCCFKHG 297 (351)
T ss_pred ccccCCccchhhcccCccccccccccC
Confidence 45569999 555699999999999999
No 194
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=36.99 E-value=16 Score=36.51 Aligned_cols=25 Identities=24% Similarity=0.673 Sum_probs=22.1
Q ss_pred CCCcccccccCcccCCCCCCccccC
Q 012831 181 LPVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 181 ~~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
+--.+|..|-++.|.+|..|-|.|.
T Consensus 150 ~rea~C~~~e~~~C~rG~~CnFmH~ 174 (260)
T KOG2202|consen 150 FREAICGQFERTECSRGGACNFMHV 174 (260)
T ss_pred hhhhhhcccccccCCCCCcCcchhh
Confidence 3445899999999999999999997
No 195
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=34.62 E-value=28 Score=33.11 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=13.0
Q ss_pred CCccceeEEccc--cHHHHHh
Q 012831 305 RPHGQHAVILAE--DAPKYLE 323 (455)
Q Consensus 305 rsrG~gfV~f~e--da~k~~~ 323 (455)
.+-||+||.|.+ ||..|+.
T Consensus 45 nPPGfAFVEFed~RDA~DAvr 65 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVR 65 (195)
T ss_pred cCCCceEEeccCcccHHHHHh
Confidence 368999999963 5554443
No 196
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=33.19 E-value=37 Score=37.63 Aligned_cols=29 Identities=24% Similarity=0.096 Sum_probs=19.5
Q ss_pred cchhHHh-hCCchHHHHHHHHHHHHHHHhh
Q 012831 33 EQEMIHL-AMSPDVVIQEVVYKAKAELQQL 61 (455)
Q Consensus 33 e~~m~rl-a~~p~~~~~~~~~~ak~~l~~~ 61 (455)
|.+---| ..|+-++|-.-+.||-.+-|+-
T Consensus 41 EL~KRnldt~GnKsVLmERLkKal~~EG~d 70 (940)
T KOG4661|consen 41 ELEKRNLDTVGNKSVLMERLKKALRAEGLD 70 (940)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHhcCCC
Confidence 4444444 6788888877777777777763
No 197
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=32.60 E-value=40 Score=34.01 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=25.4
Q ss_pred EEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCc
Q 012831 380 GFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (455)
Q Consensus 380 aFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~ 416 (455)
|||+|++..+|+.|++....+ .++.+.|+.|-+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcc
Confidence 799999999999999864332 33555777776543
No 198
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=31.42 E-value=54 Score=37.40 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=44.8
Q ss_pred cchhHHh-hCCchHHHHHHHHHHHHHHHh--hhccCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCc--
Q 012831 33 EQEMIHL-AMSPDVVIQEVVYKAKAELQQ--LAMKSASSPISPSMNSPVNEVSFQFNPFSSRPPVSPAGCRVPSYWDH-- 107 (455)
Q Consensus 33 e~~m~rl-a~~p~~~~~~~~~~ak~~l~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-- 107 (455)
-||=++| |.|+|+ +.---+|=.||-. +.-.+ |..+... +..+++.-...||-.+++||++-+..++|.-
T Consensus 634 ~rdke~l~~l~~da--g~dttfaYQeLCRqrma~k~---~~ra~gp-~~srissvssqfsdg~~pspss~SSTsSW~EEp 707 (1004)
T KOG0793|consen 634 HRDKEKLSGLGGDA--GADTTFAYQELCRQRMATKP---PDRAEGP-HTSRISSVSSQFSDGPIPSPSSRSSTSSWSEEP 707 (1004)
T ss_pred hhhhHHhhccCCCc--CccchHHHHHHHHHHhccCC---CCCcCCC-CCcccccchhhcccCCCCCCccccCCccccccc
Confidence 6777788 888882 2222245555522 11111 1111110 1222333333445446777876555589975
Q ss_pred -CcCCCCCCcccccCCCcchhhhhhhhhccccccccc
Q 012831 108 -QVTNKNNSDFVALGYSDSINELQSQTQFLSLEDQME 143 (455)
Q Consensus 108 -~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~d~l~ 143 (455)
+.|++++- .+.-|.+++|||.
T Consensus 708 A~~nmDIST---------------GHmiLsymedhLr 729 (1004)
T KOG0793|consen 708 AQSNMDIST---------------GHMILSYMEDHLR 729 (1004)
T ss_pred ccccccccc---------------chhHHHHHHHHhh
Confidence 34665543 2333456788874
No 199
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=30.79 E-value=67 Score=27.05 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=22.5
Q ss_pred EEEEECCHHHHHHHHHhc-CCeeEcCeEEEEE
Q 012831 380 GFVTFASADTVKMILAKG-NPHFVCGARVLVK 410 (455)
Q Consensus 380 aFVtF~~~e~A~~Al~~l-n~~~I~Gr~v~Vk 410 (455)
|.|||.+++-|++.+... ....+++..+.|+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~ 32 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVK 32 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEE
Confidence 689999999999999873 2444566555443
No 200
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=29.67 E-value=11 Score=39.71 Aligned_cols=80 Identities=11% Similarity=-0.013 Sum_probs=58.6
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCcc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSK 417 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k 417 (455)
.++++|+. |...+...++-+.|..+|+|...++-..-..-++-|.|........|+.. ++..+.-....+..-+|..+
T Consensus 151 rRt~~v~s-l~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k~qhsr~ai~kP~kK 228 (479)
T KOG4676|consen 151 RRTREVQS-LISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERKRQHSRRAIIKPHKK 228 (479)
T ss_pred Hhhhhhhc-chhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhhhhhhhhhhcCcccc
Confidence 47899999 89999999999999999999887776532234566999999999999987 55555544444444445444
Q ss_pred ch
Q 012831 418 LV 419 (455)
Q Consensus 418 ~~ 419 (455)
..
T Consensus 229 ~~ 230 (479)
T KOG4676|consen 229 RS 230 (479)
T ss_pred ch
Confidence 33
No 201
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.23 E-value=60 Score=34.14 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=28.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHH
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKY 321 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~ 321 (455)
-|+.||+|..|+ |.|| +-||-+--|+||.|. +..++|
T Consensus 259 IFSrFG~i~sce-------------------VIRD----~ktgdsLqyaFiEFen~escE~A 297 (479)
T KOG0415|consen 259 IFSRFGKIVSCE-------------------VIRD----RKTGDSLQYAFIEFENKESCEQA 297 (479)
T ss_pred HHhhcccceeee-------------------EEec----ccccchhheeeeeecchhhHHHH
Confidence 678888888776 7787 667889999999995 344433
No 202
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.99 E-value=39 Score=35.36 Aligned_cols=26 Identities=46% Similarity=1.014 Sum_probs=23.4
Q ss_pred CCCCcccccccC--cccCCCCCCccccC
Q 012831 180 ELPVKTCHYFNK--GFCKHGSNCRYYHG 205 (455)
Q Consensus 180 ~~~~kpC~Yf~r--G~Ck~G~sCry~Hg 205 (455)
+-.-|.|+||.+ |.|..|+.|-|.|-
T Consensus 246 ~~s~~~c~yf~~~~g~cPf~s~~~y~h~ 273 (344)
T KOG1039|consen 246 EMSAKDCKYFSQGLGSCPFGSKCFYKHL 273 (344)
T ss_pred HhhccchhhhcCCCCCCCCCCccccccc
Confidence 557899999987 79999999999997
No 203
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=23.63 E-value=38 Score=20.26 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=8.1
Q ss_pred Ccccc-cccCcc
Q 012831 183 VKTCH-YFNKGF 193 (455)
Q Consensus 183 ~kpC~-Yf~rG~ 193 (455)
-.||+ ||=|++
T Consensus 4 k~~CknffWK~~ 15 (18)
T PF03002_consen 4 KAGCKNFFWKTF 15 (18)
T ss_pred cccccceeeccc
Confidence 35888 887776
No 204
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.79 E-value=1.1e+02 Score=29.24 Aligned_cols=59 Identities=8% Similarity=-0.035 Sum_probs=43.2
Q ss_pred HHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCe-EEEEEecccC
Q 012831 355 DVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA-RVLVKPYREK 415 (455)
Q Consensus 355 dLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr-~v~Vk~a~~k 415 (455)
...++|.+|-+..-.++.+ +.++--|.|.+++.|..|..++....+.|. .++...+.+-
T Consensus 31 ~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 31 LFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred HHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 3445666665544444444 666778899999999999998889999998 7777777654
No 205
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=21.74 E-value=70 Score=35.07 Aligned_cols=22 Identities=32% Similarity=0.887 Sum_probs=18.6
Q ss_pred cccc-cccCcccCCCCCCccccC
Q 012831 184 KTCH-YFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 184 kpC~-Yf~rG~Ck~G~sCry~Hg 205 (455)
.-|. |-..|+|..|-+|||+-+
T Consensus 115 ~~Cp~f~s~G~Cp~G~~CRFl~a 137 (614)
T KOG2333|consen 115 PSCPVFESLGFCPYGFKCRFLGA 137 (614)
T ss_pred CccceeeccccCCccceeehhhc
Confidence 4688 678899999999999755
No 206
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.05 E-value=31 Score=37.43 Aligned_cols=23 Identities=9% Similarity=-0.259 Sum_probs=21.5
Q ss_pred CcccccccCcccCCCCCCccccC
Q 012831 183 VKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 183 ~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
--||++|.||+|..|..|-|+|-
T Consensus 118 p~P~l~~~K~~e~~~D~~s~Lh~ 140 (667)
T KOG4791|consen 118 PSPQLRSVKKVESSEDVPSPLHP 140 (667)
T ss_pred CchHHHHhhhhhhhccccccCCC
Confidence 34999999999999999999997
Done!