Query 012831
Match_columns 455
No_of_seqs 359 out of 2134
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:04:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 99.9 5.2E-23 1.8E-27 193.7 11.3 161 253-437 18-203 (213)
2 3u1l_A PRE-mRNA-splicing facto 99.9 1.6E-23 5.4E-28 203.2 7.6 87 333-422 129-236 (240)
3 1l3k_A Heterogeneous nuclear r 99.8 1.2E-20 4.2E-25 172.5 13.6 135 262-421 33-189 (196)
4 2cjk_A Nuclear polyadenylated 99.8 1.2E-20 4.1E-25 168.4 11.0 129 262-416 23-167 (167)
5 3md3_A Nuclear and cytoplasmic 99.8 3.2E-19 1.1E-23 158.1 13.9 128 262-414 20-166 (166)
6 2qfj_A FBP-interacting repress 99.8 4E-19 1.4E-23 164.8 13.2 143 251-417 29-207 (216)
7 3nmr_A Cugbp ELAV-like family 99.8 7.1E-19 2.4E-23 157.4 12.2 128 262-413 23-175 (175)
8 1b7f_A Protein (SXL-lethal pro 99.8 7.3E-19 2.5E-23 156.6 11.6 127 262-412 23-168 (168)
9 1fxl_A Paraneoplastic encephal 99.8 1.2E-18 3.9E-23 154.6 11.6 127 262-412 22-167 (167)
10 3smz_A Protein raver-1, ribonu 99.8 4E-18 1.4E-22 165.8 14.7 140 262-425 115-274 (284)
11 2kn4_A Immunoglobulin G-bindin 99.8 4.1E-18 1.4E-22 152.6 12.8 113 305-418 11-153 (158)
12 2g4b_A Splicing factor U2AF 65 99.8 3.9E-18 1.3E-22 152.7 11.7 109 304-413 48-172 (172)
13 1fje_B Nucleolin RBD12, protei 99.7 2.6E-18 9E-23 154.8 9.0 113 302-416 49-175 (175)
14 4f25_A Polyadenylate-binding p 99.7 4.2E-18 1.4E-22 145.9 9.5 84 337-421 4-89 (115)
15 2yh0_A Splicing factor U2AF 65 99.7 8.2E-18 2.8E-22 154.0 11.7 114 303-417 47-196 (198)
16 4fxv_A ELAV-like protein 1; RN 99.7 7.4E-18 2.5E-22 141.2 9.8 77 337-414 18-98 (99)
17 2lxi_A RNA-binding protein 10; 99.7 5.5E-18 1.9E-22 139.6 8.3 80 338-418 1-86 (91)
18 3pgw_A U1-A; protein-RNA compl 99.7 5E-17 1.7E-21 157.9 14.8 75 337-413 206-281 (282)
19 3s8s_A Histone-lysine N-methyl 99.7 2E-17 7E-22 141.3 10.4 83 336-419 4-90 (110)
20 3smz_A Protein raver-1, ribonu 99.7 5.7E-17 1.9E-21 157.7 13.4 136 251-417 23-177 (284)
21 2ghp_A U4/U6 snRNA-associated 99.7 6.3E-17 2.2E-21 157.9 12.7 143 250-418 41-200 (292)
22 2ghp_A U4/U6 snRNA-associated 99.7 7.1E-17 2.4E-21 157.6 12.9 129 262-416 137-292 (292)
23 3md1_A Nuclear and cytoplasmic 99.7 6.1E-17 2.1E-21 129.3 9.9 79 338-417 1-83 (83)
24 1whw_A Hypothetical protein ri 99.7 1.5E-16 5.2E-21 131.5 11.9 82 336-418 6-91 (99)
25 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.6E-17 2.2E-21 130.2 9.4 80 336-416 4-87 (87)
26 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.3E-16 7.9E-21 131.5 12.7 83 335-418 12-96 (103)
27 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.1E-16 3.6E-21 128.5 10.0 79 334-413 3-85 (85)
28 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.3E-16 4.4E-21 132.6 10.9 85 334-419 8-96 (102)
29 2i2y_A Fusion protein consists 99.7 8.5E-17 2.9E-21 143.3 10.1 80 335-416 70-149 (150)
30 2cq3_A RNA-binding protein 9; 99.7 3.3E-16 1.1E-20 130.5 12.9 84 335-419 12-97 (103)
31 2x1f_A MRNA 3'-END-processing 99.7 2.3E-16 7.8E-21 130.1 11.6 83 338-421 2-88 (96)
32 2dgs_A DAZ-associated protein 99.7 1.4E-16 4.8E-21 131.9 10.3 83 335-419 7-93 (99)
33 4a8x_A RNA-binding protein wit 99.7 1.6E-16 5.3E-21 128.1 10.3 79 337-416 3-86 (88)
34 1x5t_A Splicing factor 3B subu 99.7 1.3E-16 4.3E-21 131.1 9.9 82 337-419 4-90 (96)
35 2cq0_A Eukaryotic translation 99.7 2.2E-16 7.5E-21 131.7 10.9 83 335-418 12-98 (103)
36 1x5u_A Splicing factor 3B subu 99.7 1.9E-16 6.4E-21 132.3 10.5 83 335-418 12-98 (105)
37 2dgx_A KIAA0430 protein; RRM d 99.7 3.4E-16 1.2E-20 129.5 11.9 81 336-417 7-92 (96)
38 2e5h_A Zinc finger CCHC-type a 99.7 4.7E-16 1.6E-20 127.2 12.6 79 334-413 12-94 (94)
39 1sjq_A Polypyrimidine tract-bi 99.7 1E-16 3.4E-21 136.9 8.7 83 335-420 13-97 (105)
40 2dgo_A Cytotoxic granule-assoc 99.7 2E-16 6.8E-21 134.5 10.5 84 335-419 12-99 (115)
41 2dnz_A Probable RNA-binding pr 99.7 1.8E-16 6.1E-21 129.9 9.9 82 336-418 3-88 (95)
42 2adc_A Polypyrimidine tract-bi 99.7 2.4E-16 8.3E-21 149.7 12.3 77 337-415 150-228 (229)
43 1x4a_A Splicing factor, argini 99.7 2.9E-16 1E-20 132.4 11.4 83 335-418 19-102 (109)
44 1x4h_A RNA-binding protein 28; 99.7 3.6E-16 1.2E-20 131.7 11.9 84 335-419 12-105 (111)
45 2do4_A Squamous cell carcinoma 99.7 2.3E-16 7.8E-21 130.9 10.4 81 336-417 15-98 (100)
46 1qm9_A Polypyrimidine tract-bi 99.7 1.7E-16 5.8E-21 146.1 10.2 77 337-415 119-197 (198)
47 2jvr_A Nucleolar protein 3; RN 99.7 3E-16 1E-20 134.9 11.0 81 335-416 25-106 (111)
48 2dnm_A SRP46 splicing factor; 99.7 1.5E-16 5.3E-21 132.6 8.9 83 335-418 10-96 (103)
49 2e5j_A Methenyltetrahydrofolat 99.7 2E-16 6.8E-21 130.8 9.3 81 335-417 16-96 (97)
50 3ns6_A Eukaryotic translation 99.7 3.9E-17 1.3E-21 136.5 5.1 81 337-418 5-96 (100)
51 2lkz_A RNA-binding protein 5; 99.7 2E-16 6.9E-21 132.1 9.3 78 336-414 7-94 (95)
52 1x5s_A Cold-inducible RNA-bind 99.7 1.8E-16 6.1E-21 131.8 8.9 84 334-418 8-95 (102)
53 2cpz_A CUG triplet repeat RNA- 99.7 2.3E-16 7.9E-21 134.3 9.7 83 335-418 22-108 (115)
54 2err_A Ataxin-2-binding protei 99.7 2.9E-16 9.9E-21 133.2 10.3 82 334-416 25-108 (109)
55 3sde_A Paraspeckle component 1 99.7 1.4E-16 4.9E-21 154.3 9.5 134 253-416 25-180 (261)
56 2cpf_A RNA binding motif prote 99.7 3E-16 1E-20 129.5 9.9 82 336-418 3-91 (98)
57 2cqc_A Arginine/serine-rich sp 99.7 5.6E-16 1.9E-20 126.8 11.2 79 335-414 12-94 (95)
58 2wbr_A GW182, gawky, LD47780P; 99.7 4.2E-16 1.4E-20 129.0 10.4 76 335-413 4-79 (89)
59 1oo0_B CG8781-PA, drosophila Y 99.7 4.2E-16 1.4E-20 131.4 10.6 81 336-417 24-108 (110)
60 1nu4_A U1A RNA binding domain; 99.6 3.2E-16 1.1E-20 128.9 9.0 85 336-421 6-95 (97)
61 2dnh_A Bruno-like 5, RNA bindi 99.6 4.1E-16 1.4E-20 130.3 9.8 83 335-418 12-100 (105)
62 2d9p_A Polyadenylate-binding p 99.6 3.2E-16 1.1E-20 130.7 9.0 83 336-419 13-97 (103)
63 3p5t_L Cleavage and polyadenyl 99.6 6E-17 2.1E-21 132.4 4.5 79 339-418 2-86 (90)
64 1p27_B RNA-binding protein 8A; 99.6 2.6E-16 9E-21 131.7 8.5 81 336-417 21-105 (106)
65 2dgp_A Bruno-like 4, RNA bindi 99.6 5.1E-16 1.7E-20 129.9 10.2 83 335-418 10-99 (106)
66 1s79_A Lupus LA protein; RRM, 99.6 1.7E-16 5.8E-21 134.2 7.4 76 337-414 10-88 (103)
67 2cph_A RNA binding motif prote 99.6 6.4E-16 2.2E-20 129.3 10.8 83 335-418 12-100 (107)
68 2la4_A Nuclear and cytoplasmic 99.6 3.4E-16 1.2E-20 130.0 8.9 77 336-415 25-101 (101)
69 2do0_A HnRNP M, heterogeneous 99.6 7E-16 2.4E-20 130.7 10.9 83 335-418 12-97 (114)
70 2cpi_A CCR4-NOT transcription 99.6 2.8E-16 9.6E-21 133.5 8.5 81 336-417 13-103 (111)
71 2ytc_A PRE-mRNA-splicing facto 99.6 8.3E-16 2.9E-20 123.4 10.8 76 335-413 9-85 (85)
72 3r27_A HnRNP L, heterogeneous 99.6 6.1E-16 2.1E-20 130.9 10.3 81 333-416 16-98 (100)
73 3ucg_A Polyadenylate-binding p 99.6 5.9E-16 2E-20 125.1 9.8 77 338-416 6-86 (89)
74 2dgv_A HnRNP M, heterogeneous 99.6 2.8E-16 9.4E-21 128.1 7.9 82 335-417 5-88 (92)
75 1x4c_A Splicing factor, argini 99.6 1.1E-15 3.8E-20 129.1 11.8 80 336-419 13-97 (108)
76 2rs2_A Musashi-1, RNA-binding 99.6 7.6E-16 2.6E-20 130.7 10.8 81 336-418 23-107 (109)
77 2dnq_A RNA-binding protein 4B; 99.6 6.1E-16 2.1E-20 126.0 9.7 79 335-418 5-83 (90)
78 2cq1_A PTB-like protein L; RRM 99.6 8.8E-16 3E-20 129.7 10.9 82 335-419 12-95 (101)
79 1p1t_A Cleavage stimulation fa 99.6 3E-16 1E-20 130.7 7.9 85 337-422 7-95 (104)
80 2ywk_A Putative RNA-binding pr 99.6 5.3E-16 1.8E-20 127.1 9.1 78 336-414 14-94 (95)
81 2fy1_A RNA-binding motif prote 99.6 5.4E-16 1.8E-20 133.2 9.5 82 337-419 6-90 (116)
82 2a3j_A U1 small nuclear ribonu 99.6 4.5E-16 1.5E-20 136.8 9.1 87 335-422 26-117 (127)
83 2cqd_A RNA-binding region cont 99.6 8.6E-16 2.9E-20 130.9 10.6 82 335-418 14-99 (116)
84 1x4g_A Nucleolysin TIAR; struc 99.6 7.2E-16 2.5E-20 130.1 10.0 80 336-418 23-102 (109)
85 1x4d_A Matrin 3; structural ge 99.6 3.5E-16 1.2E-20 132.6 8.0 79 336-417 13-94 (102)
86 3tyt_A Heterogeneous nuclear r 99.6 5.5E-16 1.9E-20 146.1 10.2 75 337-412 122-204 (205)
87 3s7r_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 123.6 10.3 76 335-412 8-87 (87)
88 2div_A TRNA selenocysteine ass 99.6 6.2E-16 2.1E-20 127.8 9.1 82 335-417 6-96 (99)
89 2dgu_A Heterogeneous nuclear r 99.6 8.5E-16 2.9E-20 128.4 10.0 80 336-420 9-88 (103)
90 2ad9_A Polypyrimidine tract-bi 99.6 5.6E-16 1.9E-20 135.0 9.1 82 335-419 28-111 (119)
91 3d2w_A TAR DNA-binding protein 99.6 7.3E-16 2.5E-20 126.5 9.4 80 335-418 8-87 (89)
92 1why_A Hypothetical protein ri 99.6 8.1E-16 2.8E-20 127.0 9.7 79 336-417 15-95 (97)
93 2cpj_A Non-POU domain-containi 99.6 6.5E-16 2.2E-20 128.1 9.1 80 335-417 12-91 (99)
94 2cpe_A RNA-binding protein EWS 99.6 9.3E-16 3.2E-20 129.9 10.2 82 336-418 13-106 (113)
95 3n9u_C Cleavage and polyadenyl 99.6 5.8E-16 2E-20 140.3 9.3 80 337-417 54-139 (156)
96 1u6f_A Tcubp1, RNA-binding pro 99.6 9.4E-16 3.2E-20 134.5 10.3 84 335-419 39-126 (139)
97 2dng_A Eukaryotic translation 99.6 1.6E-15 5.4E-20 126.6 11.1 81 335-418 12-96 (103)
98 2dh8_A DAZ-associated protein 99.6 4E-16 1.4E-20 130.5 7.5 83 335-419 13-99 (105)
99 2jrs_A RNA-binding protein 39; 99.6 5.6E-16 1.9E-20 131.5 8.3 81 335-416 23-107 (108)
100 1x4b_A Heterogeneous nuclear r 99.6 1.3E-15 4.5E-20 129.7 10.5 80 337-418 26-109 (116)
101 2kxn_B Transformer-2 protein h 99.6 6.3E-16 2.1E-20 135.6 8.5 83 334-417 42-128 (129)
102 2xnq_A Nuclear polyadenylated 99.6 2E-15 6.9E-20 125.5 11.0 78 334-416 18-96 (97)
103 2nlw_A Eukaryotic translation 99.6 1.4E-15 4.7E-20 128.0 10.1 81 336-417 13-102 (105)
104 2cpy_A RNA-binding protein 12; 99.6 1.1E-15 3.8E-20 130.4 9.7 82 335-418 12-97 (114)
105 2cq4_A RNA binding motif prote 99.6 6E-16 2E-20 131.5 7.9 79 337-417 24-106 (114)
106 1wi8_A EIF-4B, eukaryotic tran 99.6 1.8E-15 6.3E-20 126.4 10.7 80 336-418 13-97 (104)
107 2mss_A Protein (musashi1); RNA 99.6 4.6E-16 1.6E-20 122.2 6.6 71 340-412 1-75 (75)
108 2dis_A Unnamed protein product 99.6 7.4E-16 2.5E-20 129.5 8.3 83 336-419 6-96 (109)
109 3lqv_A PRE-mRNA branch site pr 99.6 8E-16 2.7E-20 130.7 8.6 80 336-416 6-86 (115)
110 2dgw_A Probable RNA-binding pr 99.6 2.5E-15 8.4E-20 122.5 11.1 79 336-417 8-89 (91)
111 1wex_A Hypothetical protein (r 99.6 7.8E-16 2.7E-20 130.6 8.4 81 335-418 12-94 (104)
112 2cqp_A RNA-binding protein 12; 99.6 1.4E-15 4.8E-20 125.5 9.7 81 335-416 12-96 (98)
113 2dnp_A RNA-binding protein 14; 99.6 1.9E-15 6.4E-20 123.1 10.3 79 335-418 6-84 (90)
114 3ex7_B RNA-binding protein 8A; 99.6 1E-15 3.5E-20 132.1 9.1 85 335-420 19-107 (126)
115 2dgt_A RNA-binding protein 30; 99.6 3.7E-15 1.3E-19 121.8 11.9 79 335-418 7-85 (92)
116 2la6_A RNA-binding protein FUS 99.6 1.1E-15 3.6E-20 126.8 8.8 79 334-413 9-99 (99)
117 2khc_A Testis-specific RNP-typ 99.6 1.2E-15 4.1E-20 130.2 9.3 78 335-413 37-118 (118)
118 2kt5_A RNA and export factor-b 99.6 3.7E-15 1.3E-19 128.6 12.4 83 334-417 31-116 (124)
119 2cqg_A TDP-43, TAR DNA-binding 99.6 2.4E-15 8.3E-20 125.3 10.9 81 335-418 12-96 (103)
120 2hvz_A Splicing factor, argini 99.6 5.7E-16 1.9E-20 128.7 7.0 78 339-418 1-78 (101)
121 3ulh_A THO complex subunit 4; 99.6 1.9E-15 6.6E-20 126.6 10.2 78 335-413 26-106 (107)
122 2j76_E EIF-4B, EIF4B, eukaryot 99.6 5.3E-16 1.8E-20 129.3 6.5 79 335-416 16-99 (100)
123 2dhg_A TRNA selenocysteine ass 99.6 7.5E-16 2.6E-20 128.4 7.3 82 336-418 7-93 (104)
124 2m2b_A RNA-binding protein 10; 99.6 3.9E-16 1.3E-20 136.4 5.6 81 336-418 21-111 (131)
125 1x5p_A Negative elongation fac 99.6 5E-15 1.7E-19 122.4 12.0 78 336-418 13-90 (97)
126 2jvo_A Nucleolar protein 3; nu 99.6 2.1E-15 7.2E-20 128.0 9.9 78 336-418 29-106 (108)
127 1uaw_A Mouse-musashi-1; RNP-ty 99.6 6.8E-16 2.3E-20 121.5 6.3 72 339-412 1-76 (77)
128 2cqh_A IGF-II mRNA-binding pro 99.6 1.9E-15 6.5E-20 123.7 9.1 80 335-418 5-86 (93)
129 2cpd_A Apobec-1 stimulating pr 99.6 6.9E-15 2.4E-19 121.8 12.6 79 335-418 12-92 (99)
130 1h2v_Z 20 kDa nuclear CAP bind 99.6 2.7E-15 9.1E-20 134.5 10.9 83 335-418 36-122 (156)
131 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.7E-15 1.6E-19 129.5 12.1 78 334-412 59-140 (140)
132 2ki2_A SS-DNA binding protein 99.6 3.5E-16 1.2E-20 127.1 4.5 78 339-418 2-83 (90)
133 2fc9_A NCL protein; structure 99.6 3.1E-15 1E-19 124.2 9.7 80 335-418 12-94 (101)
134 2ek1_A RNA-binding protein 12; 99.6 1.1E-15 3.8E-20 125.2 6.9 78 336-414 13-94 (95)
135 2kvi_A Nuclear polyadenylated 99.6 1.7E-15 5.9E-20 125.1 7.8 79 336-419 8-87 (96)
136 1x4f_A Matrin 3; structural ge 99.6 1.8E-15 6E-20 130.5 8.1 81 335-418 22-105 (112)
137 1wg5_A Heterogeneous nuclear r 99.6 2.4E-15 8.2E-20 126.3 8.7 79 336-416 13-95 (104)
138 2db1_A Heterogeneous nuclear r 99.6 2.4E-15 8.2E-20 129.5 8.9 79 336-416 15-99 (118)
139 2cpx_A Hypothetical protein FL 99.6 3.2E-15 1.1E-19 126.8 9.5 82 336-418 23-108 (115)
140 2jwn_A Embryonic polyadenylate 99.6 2.2E-15 7.4E-20 129.7 8.4 78 338-417 36-117 (124)
141 1whx_A Hypothetical protein ri 99.6 2.2E-15 7.4E-20 128.5 8.2 76 337-415 9-84 (111)
142 2lea_A Serine/arginine-rich sp 99.6 1.6E-15 5.6E-20 133.8 7.2 83 336-419 45-131 (135)
143 1x4e_A RNA binding motif, sing 99.6 6.4E-16 2.2E-20 124.2 4.1 77 336-413 3-83 (85)
144 1fj7_A Nucleolin RBD1, protein 99.6 1.1E-15 3.7E-20 127.0 5.6 80 336-418 15-98 (101)
145 2hgl_A HNRPF protein, heteroge 99.6 2.1E-15 7.1E-20 134.1 7.7 79 336-416 42-126 (136)
146 1fjc_A Nucleolin RBD2, protein 99.6 3.6E-15 1.2E-19 122.5 8.5 80 336-417 14-93 (96)
147 2krb_A Eukaryotic translation 99.6 1.8E-15 6.1E-20 121.0 6.4 71 338-409 1-80 (81)
148 2lmi_A GRSF-1, G-rich sequence 99.6 1.5E-15 5E-20 128.3 6.0 79 336-416 9-93 (107)
149 1wf1_A RNA-binding protein RAL 99.6 5E-15 1.7E-19 125.1 9.2 77 336-417 25-102 (110)
150 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.8E-15 1.6E-19 134.4 9.8 85 336-421 70-158 (165)
151 2e44_A Insulin-like growth fac 99.6 4.9E-15 1.7E-19 121.7 8.7 80 336-416 13-93 (96)
152 2dnn_A RNA-binding protein 12; 99.6 6.3E-15 2.1E-19 126.1 9.7 76 337-415 15-93 (109)
153 1wg1_A KIAA1579 protein, homol 99.6 6.7E-15 2.3E-19 119.6 9.4 76 337-416 4-79 (88)
154 1wel_A RNA-binding protein 12; 99.6 1.5E-15 5.2E-20 131.3 5.8 80 336-417 23-106 (124)
155 1iqt_A AUF1, heterogeneous nuc 99.6 1.3E-15 4.6E-20 119.4 5.0 71 340-412 1-75 (75)
156 1wf0_A TDP-43, TAR DNA-binding 99.6 3.4E-15 1.2E-19 121.1 7.5 78 337-418 4-81 (88)
157 1x5o_A RNA binding motif, sing 99.6 6.7E-15 2.3E-19 124.8 8.8 80 336-416 23-113 (114)
158 3egn_A RNA-binding protein 40; 99.6 7.4E-15 2.5E-19 129.7 9.3 85 335-420 42-135 (143)
159 2xs2_A Deleted in azoospermia- 99.6 2.4E-15 8.1E-20 125.1 5.7 80 337-419 8-90 (102)
160 1wez_A HnRNP H', FTP-3, hetero 99.6 3.8E-15 1.3E-19 125.3 6.9 79 336-417 13-94 (102)
161 1sjr_A Polypyrimidine tract-bi 99.6 5.5E-15 1.9E-19 135.5 8.5 79 337-416 45-125 (164)
162 2cq2_A Hypothetical protein LO 99.6 7.8E-15 2.7E-19 126.9 8.8 78 336-416 23-107 (114)
163 3q2s_C Cleavage and polyadenyl 99.5 3.5E-15 1.2E-19 143.2 6.4 79 337-416 67-151 (229)
164 2e5g_A U6 snRNA-specific termi 99.5 1.6E-14 5.5E-19 118.6 9.5 79 336-417 6-84 (94)
165 2fc8_A NCL protein; structure 99.5 1.7E-14 5.9E-19 119.7 9.3 80 335-418 12-95 (102)
166 2bz2_A Negative elongation fac 99.5 2.1E-14 7.1E-19 124.6 9.0 78 336-418 37-114 (121)
167 2dha_A FLJ20171 protein; RRM d 99.5 1.1E-14 3.6E-19 127.4 7.0 78 337-416 22-106 (123)
168 2hzc_A Splicing factor U2AF 65 99.5 3.3E-14 1.1E-18 114.3 9.2 72 336-411 4-86 (87)
169 2lcw_A RNA-binding protein FUS 99.3 9.7E-16 3.3E-20 130.7 0.0 82 336-418 5-98 (116)
170 3beg_B Splicing factor, argini 99.5 1.2E-14 4.1E-19 124.5 6.6 77 337-417 15-96 (115)
171 3tyt_A Heterogeneous nuclear r 99.5 4.4E-14 1.5E-18 133.0 10.7 79 336-416 2-81 (205)
172 4f02_A Polyadenylate-binding p 99.5 3.7E-14 1.3E-18 133.1 10.0 81 336-417 13-97 (213)
173 1fxl_A Paraneoplastic encephal 99.5 5E-14 1.7E-18 124.6 10.3 79 338-417 2-84 (167)
174 1b7f_A Protein (SXL-lethal pro 99.5 4.3E-14 1.5E-18 125.5 9.8 80 337-417 2-85 (168)
175 2f3j_A RNA and export factor b 99.5 5E-14 1.7E-18 130.0 10.2 82 335-417 85-169 (177)
176 2hgn_A Heterogeneous nuclear r 99.5 8.4E-15 2.9E-19 130.7 4.5 80 336-418 44-126 (139)
177 3md3_A Nuclear and cytoplasmic 99.5 4.2E-14 1.4E-18 124.9 9.0 78 339-417 1-81 (166)
178 2hgm_A HNRPF protein, heteroge 99.5 2E-14 7E-19 126.2 6.2 77 336-415 40-121 (126)
179 2e5i_A Heterogeneous nuclear r 99.5 6.5E-14 2.2E-18 122.7 9.1 76 339-417 26-104 (124)
180 3zzy_A Polypyrimidine tract-bi 99.5 9.2E-14 3.1E-18 122.8 9.6 78 337-416 27-107 (130)
181 2dnl_A Cytoplasmic polyadenyla 99.5 1.3E-13 4.4E-18 117.5 10.1 76 336-415 6-88 (114)
182 1l3k_A Heterogeneous nuclear r 99.5 1.5E-13 5.3E-18 125.2 10.0 80 336-417 11-94 (196)
183 3pgw_S U1-70K; protein-RNA com 99.5 2.2E-13 7.7E-18 142.4 12.2 82 335-417 99-184 (437)
184 2dit_A HIV TAT specific factor 99.4 4.2E-13 1.4E-17 114.1 10.9 82 336-418 13-105 (112)
185 2qfj_A FBP-interacting repress 99.4 2E-13 6.8E-18 126.4 9.6 82 337-419 27-112 (216)
186 3pgw_A U1-A; protein-RNA compl 99.4 3.2E-13 1.1E-17 131.0 11.0 82 335-417 6-92 (282)
187 2adc_A Polypyrimidine tract-bi 99.4 1.9E-13 6.4E-18 129.7 8.9 80 334-415 30-110 (229)
188 2voo_A Lupus LA protein; RNA-b 99.4 2.7E-13 9.2E-18 126.7 9.7 75 338-414 109-186 (193)
189 2j8a_A Histone-lysine N-methyl 99.4 1.8E-13 6.3E-18 120.7 7.7 75 339-414 3-95 (136)
190 2pe8_A Splicing factor 45; RRM 99.4 6E-13 2E-17 112.9 10.0 79 336-414 6-93 (105)
191 2cjk_A Nuclear polyadenylated 99.4 2.2E-13 7.6E-18 121.0 7.6 77 337-416 2-82 (167)
192 1qm9_A Polypyrimidine tract-bi 99.4 2.3E-13 7.9E-18 125.1 7.4 77 338-416 3-80 (198)
193 3nmr_A Cugbp ELAV-like family 99.4 3E-13 1E-17 120.6 7.9 80 337-417 2-90 (175)
194 2diu_A KIAA0430 protein; struc 99.4 5E-13 1.7E-17 111.8 8.2 77 336-419 6-88 (96)
195 2yh0_A Splicing factor U2AF 65 99.4 1.6E-12 5.5E-17 118.6 9.8 77 337-417 3-90 (198)
196 1fje_B Nucleolin RBD12, protei 99.4 9.7E-13 3.3E-17 118.2 8.2 82 334-417 9-93 (175)
197 3sde_A Paraspeckle component 1 99.4 2.7E-12 9.4E-17 124.1 11.5 78 336-416 20-97 (261)
198 2g4b_A Splicing factor U2AF 65 99.3 2.4E-12 8.1E-17 114.9 9.6 76 337-416 3-89 (172)
199 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.3E-11 4.4E-16 104.1 10.6 78 337-417 9-92 (100)
200 3v4m_A Splicing factor U2AF 65 99.3 7.5E-12 2.6E-16 106.1 8.5 80 336-415 3-97 (105)
201 1jmt_A Splicing factor U2AF 35 99.3 1.4E-12 4.9E-17 110.2 3.9 69 343-412 20-103 (104)
202 3s6e_A RNA-binding protein 39; 99.2 2.5E-11 8.6E-16 104.6 9.6 79 337-415 6-93 (114)
203 3ue2_A Poly(U)-binding-splicin 99.2 2.4E-11 8.3E-16 105.3 7.8 78 337-414 19-108 (118)
204 3tht_A Alkylated DNA repair pr 99.2 4.2E-11 1.4E-15 121.7 10.3 79 333-413 13-97 (345)
205 2dnr_A Synaptojanin-1; RRM dom 98.9 3.3E-09 1.1E-13 87.9 9.4 76 334-415 3-86 (91)
206 1ufw_A Synaptojanin 2; RNP dom 98.7 5.4E-08 1.8E-12 81.1 8.1 74 333-412 10-92 (95)
207 1owx_A Lupus LA protein, SS-B, 98.6 8.2E-08 2.8E-12 83.6 8.7 77 335-414 15-95 (121)
208 3dxb_A Thioredoxin N-terminall 98.5 8.9E-08 3E-12 90.0 5.9 64 351-414 141-212 (222)
209 4f25_A Polyadenylate-binding p 97.7 1.9E-05 6.6E-10 66.7 3.5 68 262-355 25-113 (115)
210 2dhx_A Poly (ADP-ribose) polym 97.6 0.00026 9E-09 59.7 8.6 75 337-417 7-86 (104)
211 2l9w_A U4/U6 snRNA-associated- 97.4 0.0013 4.4E-08 56.2 10.8 74 338-414 21-99 (117)
212 2lxi_A RNA-binding protein 10; 96.9 0.00036 1.2E-08 56.5 2.3 56 262-345 21-79 (91)
213 2cqe_A KIAA1064 protein; CCCH 96.9 0.00057 2E-08 57.1 3.6 23 183-205 36-59 (98)
214 3lqv_A PRE-mRNA branch site pr 96.9 0.00044 1.5E-08 57.7 2.9 71 262-365 28-109 (115)
215 2rhk_C Cleavage and polyadenyl 96.9 0.00019 6.4E-09 56.7 0.3 25 181-205 14-38 (72)
216 4fxv_A ELAV-like protein 1; RN 96.8 0.00073 2.5E-08 55.6 3.9 51 251-324 20-80 (99)
217 3s8s_A Histone-lysine N-methyl 96.8 0.00076 2.6E-08 56.7 3.6 55 262-345 26-82 (110)
218 3ns6_A Eukaryotic translation 96.7 0.00069 2.4E-08 55.6 2.9 39 262-323 32-72 (100)
219 2d9n_A Cleavage and polyadenyl 96.7 0.00038 1.3E-08 55.5 1.2 24 182-205 9-32 (77)
220 1s79_A Lupus LA protein; RRM, 96.6 0.0015 5.3E-08 54.2 4.0 38 262-323 31-70 (103)
221 1wwh_A Nucleoporin 35, nucleop 96.5 0.011 3.6E-07 51.2 8.8 74 338-416 24-98 (119)
222 3d2q_A Muscleblind-like protei 96.5 0.00065 2.2E-08 53.2 1.0 22 184-205 7-29 (70)
223 2d9m_A Zinc finger CCCH-type d 96.4 0.00064 2.2E-08 53.2 0.7 23 183-205 20-42 (69)
224 3p5t_L Cleavage and polyadenyl 96.3 0.0017 5.8E-08 51.9 2.7 39 262-323 21-63 (90)
225 2lkz_A RNA-binding protein 5; 96.3 0.0013 4.5E-08 54.1 2.0 24 301-324 47-72 (95)
226 2rs2_A Musashi-1, RNA-binding 96.2 0.0034 1.2E-07 52.3 4.1 51 251-324 26-86 (109)
227 3s7r_A Heterogeneous nuclear r 96.2 0.0031 1.1E-07 49.7 3.6 40 262-324 31-72 (87)
228 2j8a_A Histone-lysine N-methyl 96.2 0.0025 8.7E-08 56.2 3.3 31 262-315 26-56 (136)
229 2dha_A FLJ20171 protein; RRM d 96.2 0.0032 1.1E-07 54.3 3.9 61 240-324 13-87 (123)
230 3d2n_A Muscleblind-like protei 96.2 0.0015 5.2E-08 53.0 1.7 23 183-205 9-32 (83)
231 3p3d_A Nucleoporin 53; structu 96.1 0.0084 2.9E-07 52.6 6.3 63 351-414 18-98 (132)
232 1wey_A Calcipressin 1; structu 96.1 0.016 5.5E-07 48.8 7.5 75 338-415 5-84 (104)
233 2dh8_A DAZ-associated protein 96.1 0.0049 1.7E-07 50.4 4.3 40 262-324 36-77 (105)
234 3n9u_C Cleavage and polyadenyl 96.0 0.0038 1.3E-07 55.8 3.7 66 251-345 56-133 (156)
235 1iqt_A AUF1, heterogeneous nuc 96.0 0.0036 1.2E-07 47.8 2.9 40 262-324 19-60 (75)
236 1m9o_A Tristetraproline; Cys3H 96.0 0.004 1.4E-07 49.0 3.2 26 180-205 9-35 (77)
237 1uaw_A Mouse-musashi-1; RNP-ty 96.0 0.004 1.4E-07 47.7 3.0 40 262-324 20-61 (77)
238 2cq4_A RNA binding motif prote 96.0 0.0058 2E-07 50.8 4.2 49 252-323 27-85 (114)
239 2cqg_A TDP-43, TAR DNA-binding 95.9 0.0049 1.7E-07 50.2 3.7 39 262-323 35-75 (103)
240 2mss_A Protein (musashi1); RNA 95.9 0.0053 1.8E-07 46.9 3.7 39 262-323 19-59 (75)
241 2dgs_A DAZ-associated protein 95.9 0.0046 1.6E-07 50.0 3.3 40 262-324 30-71 (99)
242 1x4h_A RNA-binding protein 28; 95.9 0.005 1.7E-07 50.6 3.6 40 262-324 35-76 (111)
243 3bs9_A Nucleolysin TIA-1 isofo 95.8 0.0066 2.2E-07 47.6 3.9 40 262-324 26-67 (87)
244 2xs2_A Deleted in azoospermia- 95.8 0.0065 2.2E-07 49.3 4.0 38 262-323 29-68 (102)
245 3md1_A Nuclear and cytoplasmic 95.8 0.0061 2.1E-07 47.3 3.6 39 262-323 21-61 (83)
246 2cqe_A KIAA1064 protein; CCCH 95.8 0.0026 8.8E-08 53.1 1.4 31 181-211 11-42 (98)
247 1p27_B RNA-binding protein 8A; 95.8 0.0064 2.2E-07 49.6 3.8 40 262-324 43-84 (106)
248 2dnm_A SRP46 splicing factor; 95.8 0.0064 2.2E-07 49.5 3.7 40 262-324 33-74 (103)
249 2dgp_A Bruno-like 4, RNA bindi 95.8 0.0049 1.7E-07 50.4 3.0 40 262-324 33-74 (106)
250 2dnz_A Probable RNA-binding pr 95.8 0.0083 2.8E-07 47.9 4.3 40 262-324 25-66 (95)
251 1x5u_A Splicing factor 3B subu 95.8 0.0062 2.1E-07 49.6 3.6 40 262-324 35-76 (105)
252 1x4e_A RNA binding motif, sing 95.8 0.0065 2.2E-07 47.6 3.6 39 262-323 25-65 (85)
253 1m9o_A Tristetraproline; Cys3H 95.7 0.0017 6E-08 51.1 0.0 23 183-205 50-73 (77)
254 3ucg_A Polyadenylate-binding p 95.7 0.0091 3.1E-07 46.9 4.2 39 262-323 26-66 (89)
255 1x4b_A Heterogeneous nuclear r 95.7 0.0057 2E-07 51.0 3.2 50 252-324 29-88 (116)
256 2div_A TRNA selenocysteine ass 95.7 0.0067 2.3E-07 48.9 3.5 39 262-323 29-70 (99)
257 2hgl_A HNRPF protein, heteroge 95.7 0.0088 3E-07 52.4 4.4 77 252-364 46-135 (136)
258 2x1f_A MRNA 3'-END-processing 95.7 0.0072 2.5E-07 48.6 3.6 39 262-323 22-62 (96)
259 3q2s_C Cleavage and polyadenyl 95.7 0.0066 2.3E-07 57.6 3.9 65 252-345 70-146 (229)
260 2e5s_A Otthump00000018578; ZF- 95.7 0.0018 6E-08 54.2 -0.1 23 183-205 20-43 (98)
261 2rpp_A Muscleblind-like protei 95.7 0.0024 8.1E-08 52.5 0.6 24 182-205 16-40 (89)
262 3d2q_A Muscleblind-like protei 95.7 0.0028 9.5E-08 49.6 1.0 23 182-205 41-63 (70)
263 2m2b_A RNA-binding protein 10; 95.6 0.0051 1.7E-07 52.7 2.7 49 253-324 26-85 (131)
264 1whw_A Hypothetical protein ri 95.6 0.0077 2.6E-07 48.5 3.6 40 262-324 28-69 (99)
265 2kxn_B Transformer-2 protein h 95.6 0.0091 3.1E-07 51.4 4.1 40 262-324 66-107 (129)
266 2wbr_A GW182, gawky, LD47780P; 95.6 0.0077 2.6E-07 49.5 3.4 61 262-362 27-89 (89)
267 2hvz_A Splicing factor, argini 95.6 0.009 3.1E-07 48.4 3.8 34 262-323 20-55 (101)
268 2cqd_A RNA-binding region cont 95.6 0.008 2.7E-07 50.1 3.6 40 262-324 37-78 (116)
269 2la6_A RNA-binding protein FUS 95.5 0.0071 2.4E-07 48.9 3.1 47 262-323 33-81 (99)
270 2cqc_A Arginine/serine-rich sp 95.5 0.0083 2.8E-07 47.8 3.4 40 262-324 35-76 (95)
271 2dgo_A Cytotoxic granule-assoc 95.5 0.0099 3.4E-07 49.3 3.9 40 262-324 35-76 (115)
272 1x5t_A Splicing factor 3B subu 95.5 0.0078 2.7E-07 48.1 3.2 39 262-323 25-66 (96)
273 2cq0_A Eukaryotic translation 95.5 0.0071 2.4E-07 49.2 2.9 40 262-324 35-76 (103)
274 2cpz_A CUG triplet repeat RNA- 95.5 0.0078 2.7E-07 50.1 3.2 40 262-324 45-86 (115)
275 2khc_A Testis-specific RNP-typ 95.4 0.0093 3.2E-07 49.7 3.6 40 262-324 60-101 (118)
276 1oo0_B CG8781-PA, drosophila Y 95.4 0.01 3.4E-07 48.9 3.7 48 253-323 29-86 (110)
277 2cpy_A RNA-binding protein 12; 95.4 0.0061 2.1E-07 50.9 2.3 53 262-345 35-90 (114)
278 2jwn_A Embryonic polyadenylate 95.4 0.0092 3.2E-07 50.2 3.4 50 251-323 37-96 (124)
279 2e5h_A Zinc finger CCHC-type a 95.4 0.013 4.5E-07 46.6 4.1 39 262-323 36-76 (94)
280 2do4_A Squamous cell carcinoma 95.4 0.011 3.6E-07 47.9 3.5 39 262-324 37-77 (100)
281 2ku7_A MLL1 PHD3-CYP33 RRM chi 95.3 0.011 3.8E-07 50.4 3.8 39 262-323 83-123 (140)
282 3mdf_A Peptidyl-prolyl CIS-tra 95.3 0.0091 3.1E-07 46.5 3.0 39 262-323 27-67 (85)
283 1p1t_A Cleavage stimulation fa 95.3 0.0078 2.7E-07 48.9 2.7 55 262-345 28-84 (104)
284 2kn4_A Immunoglobulin G-bindin 95.3 0.0097 3.3E-07 52.1 3.5 40 262-324 90-131 (158)
285 1u6f_A Tcubp1, RNA-binding pro 95.3 0.0085 2.9E-07 51.4 3.0 40 262-324 62-103 (139)
286 2cqb_A Peptidyl-prolyl CIS-tra 95.3 0.0069 2.3E-07 49.1 2.3 39 262-323 32-72 (102)
287 2dhg_A TRNA selenocysteine ass 95.3 0.013 4.6E-07 47.5 4.1 39 262-324 29-70 (104)
288 1x5s_A Cold-inducible RNA-bind 95.3 0.011 3.7E-07 47.9 3.4 40 262-324 32-73 (102)
289 2fy1_A RNA-binding motif prote 95.3 0.011 3.9E-07 49.6 3.6 39 262-324 27-67 (116)
290 1wg5_A Heterogeneous nuclear r 95.2 0.01 3.4E-07 48.8 3.1 39 262-324 35-76 (104)
291 2dnh_A Bruno-like 5, RNA bindi 95.2 0.013 4.3E-07 47.8 3.6 39 262-324 35-75 (105)
292 2jrs_A RNA-binding protein 39; 95.2 0.0094 3.2E-07 49.5 2.8 39 262-323 46-86 (108)
293 1wez_A HnRNP H', FTP-3, hetero 95.1 0.0094 3.2E-07 49.1 2.6 21 303-323 51-73 (102)
294 1wel_A RNA-binding protein 12; 95.1 0.0068 2.3E-07 51.3 1.7 39 262-323 45-85 (124)
295 3ulh_A THO complex subunit 4; 95.1 0.015 5E-07 47.5 3.6 39 262-324 49-89 (107)
296 3ex7_B RNA-binding protein 8A; 95.1 0.014 4.6E-07 49.3 3.5 39 262-323 42-82 (126)
297 2ek1_A RNA-binding protein 12; 95.1 0.0089 3E-07 47.7 2.3 39 262-323 35-75 (95)
298 1i2t_A HYD protein; four alpha 95.1 0.016 5.4E-07 44.3 3.5 50 8-58 7-57 (61)
299 2e5s_A Otthump00000018578; ZF- 95.1 0.0046 1.6E-07 51.6 0.5 24 181-205 54-77 (98)
300 2pe8_A Splicing factor 45; RRM 95.1 0.024 8.1E-07 47.2 4.9 56 262-345 33-90 (105)
301 2a3j_A U1 small nuclear ribonu 95.0 0.014 4.9E-07 50.4 3.6 37 262-324 53-91 (127)
302 2krb_A Eukaryotic translation 95.0 0.03 1E-06 43.5 5.1 38 262-324 27-66 (81)
303 2ki2_A SS-DNA binding protein 95.0 0.011 3.9E-07 46.7 2.6 40 262-324 21-61 (90)
304 2cpf_A RNA binding motif prote 95.0 0.013 4.5E-07 47.1 2.9 43 262-324 25-69 (98)
305 2cqp_A RNA-binding protein 12; 94.9 0.01 3.4E-07 47.7 2.1 40 262-324 35-76 (98)
306 2ywk_A Putative RNA-binding pr 94.9 0.02 6.9E-07 45.6 3.8 38 262-323 36-75 (95)
307 3d2w_A TAR DNA-binding protein 94.8 0.017 5.9E-07 46.2 3.3 40 252-319 13-62 (89)
308 2dis_A Unnamed protein product 94.8 0.016 5.6E-07 47.4 3.3 40 262-324 28-71 (109)
309 1h2v_Z 20 kDa nuclear CAP bind 94.8 0.019 6.6E-07 50.3 3.9 50 252-324 41-100 (156)
310 2j76_E EIF-4B, EIF4B, eukaryot 94.8 0.012 4.3E-07 47.8 2.5 49 251-323 20-79 (100)
311 2dnl_A Cytoplasmic polyadenyla 94.8 0.0097 3.3E-07 49.7 1.8 21 304-324 49-71 (114)
312 1rk8_A CG8781-PA, CG8781-PA pr 94.8 0.019 6.6E-07 51.0 3.8 48 253-323 75-132 (165)
313 1wi8_A EIF-4B, eukaryotic tran 94.8 0.015 5.2E-07 47.3 2.9 38 262-323 35-75 (104)
314 1x5o_A RNA binding motif, sing 94.7 0.016 5.5E-07 47.9 3.0 39 262-324 45-85 (114)
315 2kt5_A RNA and export factor-b 94.7 0.018 6.2E-07 48.5 3.3 38 262-323 55-94 (124)
316 2cpe_A RNA-binding protein EWS 94.7 0.016 5.5E-07 47.9 2.9 23 301-323 59-83 (113)
317 3pq1_A Poly(A) RNA polymerase; 94.7 0.021 7.1E-07 60.0 4.2 56 338-396 53-108 (464)
318 1jmt_A Splicing factor U2AF 35 94.6 0.036 1.2E-06 46.0 4.8 39 262-324 46-87 (104)
319 2dng_A Eukaryotic translation 94.6 0.02 6.8E-07 46.6 3.2 38 262-323 35-74 (103)
320 2d9o_A DNAJ (HSP40) homolog, s 94.6 0.019 6.6E-07 47.6 3.1 35 262-324 37-73 (100)
321 1sjq_A Polypyrimidine tract-bi 94.6 0.021 7.3E-07 48.0 3.3 33 262-323 36-70 (105)
322 2nlw_A Eukaryotic translation 94.6 0.043 1.5E-06 45.0 5.2 38 262-324 41-80 (105)
323 2cph_A RNA binding motif prote 94.5 0.026 8.9E-07 45.9 3.6 41 262-324 35-77 (107)
324 3ue2_A Poly(U)-binding-splicin 94.5 0.029 1E-06 47.9 4.1 59 262-345 45-105 (118)
325 3d2n_A Muscleblind-like protei 94.4 0.0098 3.3E-07 48.2 0.9 23 182-205 42-64 (83)
326 2hgm_A HNRPF protein, heteroge 94.4 0.022 7.5E-07 49.3 3.2 48 252-324 44-103 (126)
327 2hgn_A Heterogeneous nuclear r 94.4 0.024 8.3E-07 49.8 3.5 48 251-323 47-104 (139)
328 2db1_A Heterogeneous nuclear r 94.4 0.017 5.7E-07 48.7 2.3 47 253-323 20-79 (118)
329 2dnn_A RNA-binding protein 12; 94.4 0.019 6.6E-07 48.2 2.6 47 252-323 18-74 (109)
330 2do0_A HnRNP M, heterogeneous 94.3 0.028 9.4E-07 46.4 3.5 38 262-323 35-74 (114)
331 2lea_A Serine/arginine-rich sp 94.3 0.023 7.9E-07 49.1 3.2 39 262-323 67-107 (135)
332 2fc6_A Nuclear, target of EGR1 94.3 0.026 8.9E-07 41.1 2.8 26 180-205 17-43 (50)
333 2dgv_A HnRNP M, heterogeneous 94.3 0.032 1.1E-06 44.1 3.7 38 262-324 28-67 (92)
334 2lmi_A GRSF-1, G-rich sequence 94.2 0.016 5.5E-07 47.8 1.7 20 304-323 52-73 (107)
335 3pgw_S U1-70K; protein-RNA com 94.1 0.035 1.2E-06 57.7 4.5 40 262-324 122-163 (437)
336 2d9n_A Cleavage and polyadenyl 94.1 0.011 3.8E-07 46.9 0.6 22 183-205 38-60 (77)
337 3v4m_A Splicing factor U2AF 65 94.1 0.06 2E-06 44.7 5.1 42 262-324 35-78 (105)
338 1nmr_A Poly(A)-binding protein 94.1 0.03 1E-06 45.5 3.0 50 8-58 29-79 (85)
339 2jvr_A Nucleolar protein 3; RN 94.0 0.026 9E-07 47.6 2.8 47 251-324 29-86 (111)
340 4a8x_A RNA-binding protein wit 94.0 0.023 8E-07 44.3 2.3 39 262-323 24-65 (88)
341 2dyd_A Poly(A)-binding protein 94.0 0.033 1.1E-06 45.3 3.1 50 8-58 28-78 (85)
342 1x4a_A Splicing factor, argini 94.0 0.042 1.4E-06 45.1 3.9 36 262-323 42-79 (109)
343 2rhk_C Cleavage and polyadenyl 93.8 0.012 4.3E-07 46.2 0.4 23 182-205 43-66 (72)
344 1whv_A Poly(A)-specific ribonu 93.8 0.2 6.9E-06 41.8 7.6 55 337-397 15-69 (100)
345 2err_A Ataxin-2-binding protei 93.8 0.031 1.1E-06 46.3 2.8 47 253-324 32-88 (109)
346 3kuj_A Polyadenylate-binding p 93.6 0.057 2E-06 44.2 4.0 52 9-61 27-79 (88)
347 2voo_A Lupus LA protein; RNA-b 93.6 0.04 1.4E-06 50.6 3.5 49 252-324 111-169 (193)
348 2cqi_A Nucleolysin TIAR; RNA r 93.6 0.054 1.9E-06 43.8 3.9 37 262-323 35-73 (103)
349 1fj7_A Nucleolin RBD1, protein 93.6 0.013 4.5E-07 47.4 0.2 22 302-323 53-76 (101)
350 2cq3_A RNA-binding protein 9; 93.6 0.06 2.1E-06 43.6 4.1 37 262-323 35-73 (103)
351 2d9p_A Polyadenylate-binding p 93.5 0.045 1.5E-06 44.3 3.3 38 262-324 35-74 (103)
352 1x4d_A Matrin 3; structural ge 93.4 0.037 1.3E-06 46.0 2.6 33 262-323 36-70 (102)
353 2cpi_A CCR4-NOT transcription 93.4 0.054 1.9E-06 44.8 3.6 59 261-345 37-97 (111)
354 2lcw_A RNA-binding protein FUS 92.5 0.014 5E-07 48.5 0.0 47 262-323 27-75 (116)
355 2ad9_A Polypyrimidine tract-bi 93.3 0.044 1.5E-06 47.0 2.9 33 262-323 51-85 (119)
356 1ifw_A Polyadenylate-binding p 93.1 0.069 2.3E-06 44.0 3.7 53 8-61 26-81 (92)
357 2f3j_A RNA and export factor b 92.9 0.052 1.8E-06 49.2 3.0 39 262-324 108-148 (177)
358 2dgx_A KIAA0430 protein; RRM d 92.6 0.084 2.9E-06 42.4 3.6 38 261-324 32-71 (96)
359 2cq1_A PTB-like protein L; RRM 92.6 0.061 2.1E-06 44.5 2.7 33 262-323 35-69 (101)
360 1x4f_A Matrin 3; structural ge 92.6 0.037 1.3E-06 47.0 1.4 33 262-323 46-80 (112)
361 1wex_A Hypothetical protein (r 92.5 0.071 2.4E-06 44.2 3.0 33 262-323 35-69 (104)
362 2la4_A Nuclear and cytoplasmic 92.3 0.11 3.8E-06 41.8 4.0 54 241-323 16-81 (101)
363 2cpx_A Hypothetical protein FL 92.3 0.05 1.7E-06 44.9 1.9 22 303-324 63-86 (115)
364 3ctr_A Poly(A)-specific ribonu 92.3 0.13 4.3E-06 43.1 4.3 54 339-398 7-60 (101)
365 3r27_A HnRNP L, heterogeneous 91.9 0.11 3.8E-06 43.2 3.5 51 262-345 41-93 (100)
366 2rpp_A Muscleblind-like protei 91.8 0.037 1.3E-06 45.4 0.5 23 182-205 50-72 (89)
367 2dgw_A Probable RNA-binding pr 91.8 0.085 2.9E-06 41.6 2.6 21 303-323 46-68 (91)
368 1uw4_A UPF3X; nonsense mediate 91.7 0.48 1.6E-05 38.8 7.1 65 339-404 2-72 (91)
369 1g9l_A Polyadenylate-binding p 91.5 0.079 2.7E-06 47.1 2.3 51 9-60 73-124 (144)
370 1wf0_A TDP-43, TAR DNA-binding 91.4 0.064 2.2E-06 42.2 1.5 31 262-320 25-57 (88)
371 2fc9_A NCL protein; structure 91.4 0.1 3.5E-06 42.0 2.8 22 302-323 48-71 (101)
372 2e5j_A Methenyltetrahydrofolat 91.4 0.075 2.6E-06 42.6 1.9 21 304-324 53-75 (97)
373 2cq2_A Hypothetical protein LO 91.3 0.14 4.8E-06 43.6 3.6 54 262-345 47-102 (114)
374 3s6e_A RNA-binding protein 39; 91.2 0.28 9.7E-06 41.4 5.5 51 262-345 37-89 (114)
375 2dit_A HIV TAT specific factor 91.2 0.19 6.6E-06 41.5 4.4 36 262-324 46-83 (112)
376 1nu4_A U1A RNA binding domain; 91.1 0.074 2.5E-06 42.3 1.6 38 261-324 31-70 (97)
377 1whx_A Hypothetical protein ri 91.0 0.16 5.5E-06 42.1 3.6 34 262-324 30-65 (111)
378 1x4c_A Splicing factor, argini 90.4 0.17 5.7E-06 41.5 3.2 33 262-324 35-69 (108)
379 2i2y_A Fusion protein consists 90.4 0.089 3E-06 45.7 1.6 41 375-416 11-52 (150)
380 1sjr_A Polypyrimidine tract-bi 90.1 0.15 5E-06 46.3 2.8 36 262-324 66-103 (164)
381 3egn_A RNA-binding protein 40; 90.1 0.053 1.8E-06 46.7 -0.1 54 253-324 48-111 (143)
382 3beg_B Splicing factor, argini 90.0 0.17 5.8E-06 42.2 3.0 44 251-324 17-70 (115)
383 2ytc_A PRE-mRNA-splicing facto 89.8 0.24 8.1E-06 38.3 3.5 33 262-323 32-66 (85)
384 2cpj_A Non-POU domain-containi 89.4 0.14 4.7E-06 41.1 1.9 34 262-324 35-70 (99)
385 1why_A Hypothetical protein ri 89.0 0.25 8.5E-06 39.4 3.1 34 262-324 37-72 (97)
386 1x5p_A Negative elongation fac 88.8 0.21 7.2E-06 39.9 2.5 34 262-324 33-68 (97)
387 3dxb_A Thioredoxin N-terminall 88.7 0.27 9.1E-06 45.4 3.5 59 262-345 149-209 (222)
388 1x4g_A Nucleolysin TIAR; struc 88.7 0.25 8.5E-06 40.4 2.9 44 251-323 26-79 (109)
389 1fjc_A Nucleolin RBD2, protein 88.2 0.13 4.5E-06 40.9 0.9 22 302-323 48-71 (96)
390 2jvo_A Nucleolar protein 3; nu 86.7 0.4 1.4E-05 39.5 3.1 42 252-324 33-84 (108)
391 3zzy_A Polypyrimidine tract-bi 86.6 0.25 8.7E-06 43.0 1.8 35 262-324 48-85 (130)
392 2kvi_A Nuclear polyadenylated 86.4 0.23 7.9E-06 39.6 1.4 41 253-324 13-64 (96)
393 2xnq_A Nuclear polyadenylated 86.3 0.39 1.3E-05 38.6 2.8 43 251-324 23-76 (97)
394 3tht_A Alkylated DNA repair pr 86.2 0.57 1.9E-05 47.2 4.5 19 306-324 55-75 (345)
395 2dnq_A RNA-binding protein 4B; 85.9 0.52 1.8E-05 36.9 3.3 31 262-323 28-60 (90)
396 2bz2_A Negative elongation fac 85.9 0.27 9.3E-06 41.6 1.6 34 262-324 57-92 (121)
397 2fc8_A NCL protein; structure 85.0 0.43 1.5E-05 38.2 2.4 23 301-323 48-72 (102)
398 2e5i_A Heterogeneous nuclear r 84.6 0.43 1.5E-05 41.0 2.3 34 262-324 45-81 (124)
399 2hzc_A Splicing factor U2AF 65 84.2 0.65 2.2E-05 35.8 3.0 19 305-323 51-71 (87)
400 2dgu_A Heterogeneous nuclear r 83.6 0.6 2.1E-05 37.6 2.7 31 262-323 31-63 (103)
401 1wf1_A RNA-binding protein RAL 83.3 0.53 1.8E-05 38.4 2.3 31 262-323 48-80 (110)
402 2cpd_A Apobec-1 stimulating pr 82.5 0.75 2.5E-05 36.7 2.8 18 306-323 50-69 (99)
403 2cqh_A IGF-II mRNA-binding pro 81.5 0.4 1.4E-05 37.8 0.8 19 306-324 43-63 (93)
404 3u1l_A PRE-mRNA-splicing facto 80.3 1.7 5.7E-05 41.6 4.8 28 182-210 69-96 (240)
405 1wg1_A KIAA1579 protein, homol 80.2 0.48 1.6E-05 37.1 0.8 19 305-323 38-58 (88)
406 2e5g_A U6 snRNA-specific termi 80.0 1.7 5.7E-05 34.3 4.1 15 309-323 47-63 (94)
407 2dnp_A RNA-binding protein 14; 79.1 1.3 4.4E-05 34.6 3.1 32 262-324 29-62 (90)
408 2l08_A Regulator of nonsense t 78.2 3.4 0.00012 34.2 5.5 67 337-404 8-80 (97)
409 2dgt_A RNA-binding protein 30; 78.1 1 3.4E-05 35.4 2.2 17 307-323 44-62 (92)
410 2diu_A KIAA0430 protein; struc 76.6 1.6 5.4E-05 36.2 3.0 17 308-324 47-65 (96)
411 2e44_A Insulin-like growth fac 74.5 2 6.8E-05 33.7 3.0 36 262-323 35-72 (96)
412 3d45_A Poly(A)-specific ribonu 70.4 12 0.00042 39.3 8.8 56 337-398 439-494 (507)
413 3u9g_A Zinc finger CCCH-type a 48.2 5.4 0.00018 37.8 1.1 25 181-205 87-115 (229)
414 3u9g_A Zinc finger CCCH-type a 44.3 8.6 0.00029 36.5 1.8 23 182-205 174-196 (229)
415 3v33_A Ribonuclease ZC3H12A; r 32.6 9.3 0.00032 36.1 0.0 24 180-205 189-212 (223)
416 3e50_C Protransforming growth 23.9 19 0.00065 26.0 0.3 21 184-205 6-26 (50)
417 2rnl_A Amphiregulin; AR, color 23.5 19 0.00064 26.0 0.2 21 184-205 10-30 (50)
418 1i25_A Huwentoxin-II, HWTX-II; 23.2 25 0.00085 23.5 0.8 21 180-203 12-32 (37)
419 3ts2_A Protein LIN-28 homolog 21.4 19 0.00065 31.6 -0.1 28 354-385 2-29 (148)
420 2g0c_A ATP-dependent RNA helic 20.7 1.6E+02 0.0054 21.9 5.2 69 340-413 2-75 (76)
421 3eqe_A Putative cystein deoxyg 20.1 21 0.00072 32.1 -0.1 45 1-45 11-55 (171)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.88 E-value=5.2e-23 Score=193.72 Aligned_cols=161 Identities=17% Similarity=0.287 Sum_probs=118.4
Q ss_pred ccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHH
Q 012831 253 ISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYL 322 (455)
Q Consensus 253 ~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~ 322 (455)
+.|.+||.. +|++||+|.++. ++++ +.+++++||+||.|. ++|.+|+
T Consensus 18 lfVgnLp~~~te~~L~~~F~~~G~I~~v~-------------------i~~d----~~tg~~~G~afV~F~~~~~A~~Ai 74 (213)
T 4f02_A 18 LYVGDLHPDVTEAMLYEKFSPAGPILSIR-------------------VCRD----MITRRSLGYAYVNFQQPADAERAL 74 (213)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEE-------------------EEEC----TTTCCEEEEEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhhCCEEEEE-------------------Eecc----cCCCCccccccceeCCHHHHHHHH
Confidence 456666643 799999999876 6666 567999999999996 5777777
Q ss_pred hhCCCCCC--------CCCC-----CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCCeEEEEECCH
Q 012831 323 ENRNERSD--------PGPI-----VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASA 387 (455)
Q Consensus 323 ~~r~~r~d--------~~~~-----~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d--k~RGfaFVtF~~~ 387 (455)
........ .... ....++|||+| |++.+|+++|+++|++||.|++|+|+.| .+||||||+|.+.
T Consensus 75 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~n-l~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~ 153 (213)
T 4f02_A 75 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKN-LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQ 153 (213)
T ss_dssp HHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSH
T ss_pred HHhhhhhcCCcccccccccccccccccccccceECC-cccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCH
Confidence 54222110 0011 11457999999 8999999999999999999999999987 4789999999999
Q ss_pred HHHHHHHHhcCCeeEcCeEEEEEecccCccchhHHHhhhhCCCCCCCCCC
Q 012831 388 DTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQY 437 (455)
Q Consensus 388 e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k~~~~~~~~~~~~~~~~~p~~ 437 (455)
++|++|++.||++.|+|+.|.|++|+++.........+......+..|.+
T Consensus 154 ~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~p~~~P~~ 203 (213)
T 4f02_A 154 EAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFYPYDVPDY 203 (213)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCHHHHHHHHC--------------
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEcCCCcccchhhhcccCCCCCCCCCCC
Confidence 99999999999999999999999999876554444333333333334443
No 2
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.88 E-value=1.6e-23 Score=203.24 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=72.1
Q ss_pred CCCCCcceEEEeCCCCCCC---------CHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeE-
Q 012831 333 PIVTGSRQIYLTFPAESTF---------TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV- 402 (455)
Q Consensus 333 ~~~~~~rkIfVg~~l~~~~---------teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I- 402 (455)
......++||||+ |+..+ +|++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.|++..|
T Consensus 129 s~~~~~rtLfVgn-L~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 129 SFRKKNKTLYVGG-IDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp --CCCCCEEEEEC-TTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccccCCceeecCC-CChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3445789999999 89887 7999999999999999999998 789999999999999999999999999
Q ss_pred -----------cCeEEEEEecccCccchhHH
Q 012831 403 -----------CGARVLVKPYREKSKLVDRK 422 (455)
Q Consensus 403 -----------~Gr~v~Vk~a~~k~k~~~~~ 422 (455)
.|+.|.|+||+++.....++
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp~~~~ 236 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDPAAQK 236 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---------
T ss_pred ccccccccccCCCCEEEEEEccCCCCHHHhh
Confidence 89999999999876544433
No 3
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.84 E-value=1.2e-20 Score=172.52 Aligned_cols=135 Identities=24% Similarity=0.370 Sum_probs=104.9
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCC-------C-
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSD-------P- 331 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d-------~- 331 (455)
+|++||+|.++. ++++ +.+++++||+||.|. ++|.+++...+.... .
T Consensus 33 ~F~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 33 HFEQWGTLTDCV-------------------VMRD----PNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp HHGGGSCEEEEE-------------------EEEC----TTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred HHHhCCCEEEEE-------------------EEEc----CCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 799999998876 5555 456889999999996 678888875222111 0
Q ss_pred --------CCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCC
Q 012831 332 --------GPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNP 399 (455)
Q Consensus 332 --------~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~ 399 (455)
.......++|||+| |+..+|+++|+++|++||.|..|+|+.+ +++|||||+|.+.++|++|++. ++
T Consensus 90 ~~~~~~~~~~~~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~ 167 (196)
T 1l3k_A 90 VSREDSQRPGAHLTVKKIFVGG-IKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY 167 (196)
T ss_dssp CC-----------CCSEEEEEC-CTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC
T ss_pred cCcccccccccCCCcceEEEeC-CCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC
Confidence 00112457999999 8999999999999999999999999976 4789999999999999999998 89
Q ss_pred eeEcCeEEEEEecccCccchhH
Q 012831 400 HFVCGARVLVKPYREKSKLVDR 421 (455)
Q Consensus 400 ~~I~Gr~v~Vk~a~~k~k~~~~ 421 (455)
+.|+|+.|.|+++.++.+....
T Consensus 168 ~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 168 HTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp CEETTEECEEEECC--------
T ss_pred cEECCEEEEEEecCChhHhccc
Confidence 9999999999999998876544
No 4
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.83 E-value=1.2e-20 Score=168.37 Aligned_cols=129 Identities=19% Similarity=0.330 Sum_probs=105.9
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCC-----CCCC
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSD-----PGPI 334 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d-----~~~~ 334 (455)
+|++||+|..+. ++++ +.+++++||+||.|. ++|.+++.. ....+ ....
T Consensus 23 ~F~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 23 YFGKYGTVTDLK-------------------IMKD----PATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRA 78 (167)
T ss_dssp HHTTTCCEEEEE-------------------CCCC----TTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEEC
T ss_pred HHHhCCCEEEEE-------------------EEEC----CCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccc
Confidence 699999998876 3444 457899999999996 678888873 11111 1111
Q ss_pred -----CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCe
Q 012831 335 -----VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (455)
Q Consensus 335 -----~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr 405 (455)
....++|||+| |+..+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++ +++..++|+
T Consensus 79 ~~~~~~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 79 IPRDEQDKTGKIFVGG-IGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp CCHHHHHHCEEEEEEE-ECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred cchhhccCCCeEEECC-CCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 11456999999 8999999999999999999999999976 478999999999999999998 699999999
Q ss_pred EEEEEecccCc
Q 012831 406 RVLVKPYREKS 416 (455)
Q Consensus 406 ~v~Vk~a~~k~ 416 (455)
.|.|++|.||.
T Consensus 157 ~i~V~~a~pk~ 167 (167)
T 2cjk_A 157 KIEIKRAEPRH 167 (167)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEeecCCCC
Confidence 99999999873
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.2e-19 Score=158.07 Aligned_cols=128 Identities=13% Similarity=0.183 Sum_probs=103.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh-CCCCCC--------
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN-RNERSD-------- 330 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~-r~~r~d-------- 330 (455)
+|++||.|.++. +.+++ .++++|++||.|. ++|.+++.. .+....
T Consensus 20 ~f~~~G~i~~v~-------------------i~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 75 (166)
T 3md3_A 20 YFQVGGPIANIK-------------------IMIDK-----NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW 75 (166)
T ss_dssp HHGGGSCEEEEE-------------------EECCC-----C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHHhcCCeEEEE-------------------EEECC-----CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEE
Confidence 699999998866 44442 3678999999996 577777742 111111
Q ss_pred ----CCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeE
Q 012831 331 ----PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFV 402 (455)
Q Consensus 331 ----~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I 402 (455)
........++|||+| |+..+|+++|+++|++||.|..++++.+ +++|||||+|.+.++|++|++.+|+..+
T Consensus 76 ~~~~~~~~~~~~~~l~v~n-l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 76 AFQSQQSSSDDTFNLFVGD-LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp CCCCCCCCCTTCEEEEEES-CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred cCCCCCCCCCCCceEEECC-CCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 112234577999999 8999999999999999999999999976 5789999999999999999999999999
Q ss_pred cCeEEEEEeccc
Q 012831 403 CGARVLVKPYRE 414 (455)
Q Consensus 403 ~Gr~v~Vk~a~~ 414 (455)
+|+.|.|.+|++
T Consensus 155 ~g~~i~v~~a~~ 166 (166)
T 3md3_A 155 NGRPLRINWAAK 166 (166)
T ss_dssp TTEECEEEESCC
T ss_pred CCcEEEEEecCC
Confidence 999999999864
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=4e-19 Score=164.84 Aligned_cols=143 Identities=14% Similarity=0.230 Sum_probs=114.1
Q ss_pred CCccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHH
Q 012831 251 NPISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPK 320 (455)
Q Consensus 251 ~p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k 320 (455)
..+.|.+||.. +|++||+|..+. ++++ +.+++++||+||.|. ++|.+
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~A~~ 85 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSID-------------------MSWD----SVTMKHKGFAFVEYEVPEAAQL 85 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEE-------------------ECCC-----CC-CCCSEEEEEESSHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEE-------------------Eeec----CCCCccCceEEEEeCCHHHHHH
Confidence 34677777754 899999998876 4444 356889999999996 57888
Q ss_pred HHhh-CCCCCCCCC-----C----------------CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----
Q 012831 321 YLEN-RNERSDPGP-----I----------------VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---- 374 (455)
Q Consensus 321 ~~~~-r~~r~d~~~-----~----------------~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---- 374 (455)
++.. .+....... . ....++|||++ |+..+|+++|+++|++||.|+.|+|+.+
T Consensus 86 A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n-lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g 164 (216)
T 2qfj_A 86 ALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVAS-VHQDLSDDDIKSVFEAFGKIKSATLARDPTTG 164 (216)
T ss_dssp HHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEEC-CCTTCCHHHHHHHHTTSSCEEEEEEEECTTTC
T ss_pred HHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeC-CCCcCCHHHHHHHHhccCCeeEEEEEecCCCC
Confidence 8773 222111000 0 12347999999 8999999999999999999999999986
Q ss_pred CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCcc
Q 012831 375 QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSK 417 (455)
Q Consensus 375 k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k 417 (455)
+++|||||+|.+.++|++|++.+|+..|+|+.|.|.++.++..
T Consensus 165 ~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 165 KHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred CcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 4689999999999999999999999999999999999998754
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.78 E-value=7.1e-19 Score=157.43 Aligned_cols=128 Identities=20% Similarity=0.314 Sum_probs=101.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccC--CCccceeEEcc--ccHHHHHhhCCC-CCCC-----
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLID--RPHGQHAVILA--EDAPKYLENRNE-RSDP----- 331 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tg--rsrG~gfV~f~--eda~k~~~~r~~-r~d~----- 331 (455)
+|++||+|.++. ++++ +.++ +++||+||.|. ++|.+++..-.. ....
T Consensus 23 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 23 LFEQYGAVYEIN-------------------VLRD----RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP 79 (175)
T ss_dssp HHHTTSCEEEEE-------------------EEEE----CSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred HHHhCCCEEEEE-------------------EEec----CCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence 699999998876 4554 2334 78999999996 577777653211 1110
Q ss_pred ---------CCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCC
Q 012831 332 ---------GPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNP 399 (455)
Q Consensus 332 ---------~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~ 399 (455)
.......++|||+| |+..+|+++|+++|++||.|.+|+++.+ +++|||||+|.+.++|++|++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~v~n-l~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 80 IQMKPADSEKNNAVEDRKLFIGM-ISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp CEEEECGGGCCSCGGGSEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred eEEccccccccccCCCCeEEEcC-CCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 01122567999999 8999999999999999999999999987 4689999999999999999999998
Q ss_pred eeEc---CeEEEEEecc
Q 012831 400 HFVC---GARVLVKPYR 413 (455)
Q Consensus 400 ~~I~---Gr~v~Vk~a~ 413 (455)
..+. |++|.|++|.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8776 4999999974
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=7.3e-19 Score=156.60 Aligned_cols=127 Identities=17% Similarity=0.237 Sum_probs=103.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh-CCCCCC--------
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN-RNERSD-------- 330 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~-r~~r~d-------- 330 (455)
+|++||.|..+. ++++ +.+++++|++||.|. ++|.+++.. .+....
T Consensus 23 ~f~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 23 LFRAIGPINTCR-------------------IMRD----YKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp HHHTTSCEEEEE-------------------CCEE----TTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHHhcCCeeEEE-------------------EEEe----CCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 689999998876 3444 346889999999996 577777753 111111
Q ss_pred --CCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 331 --PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 331 --~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
........++|||++ |+..+++++|+++|++||.|..|+++.+ +++|||||+|.+.++|++|++.+|+..++|
T Consensus 80 ~~~~~~~~~~~~l~v~n-l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 80 ARPGGESIKDTNLYVTN-LPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CCCCSSTTTTCEEEEES-CCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred cCCCcccCCCCCEEEeC-CCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 122234678999999 8999999999999999999999999976 467999999999999999999999999988
Q ss_pred --eEEEEEec
Q 012831 405 --ARVLVKPY 412 (455)
Q Consensus 405 --r~v~Vk~a 412 (455)
++|.|++|
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999886
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=1.2e-18 Score=154.60 Aligned_cols=127 Identities=21% Similarity=0.301 Sum_probs=102.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh-CCCCCC--------
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN-RNERSD-------- 330 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~-r~~r~d-------- 330 (455)
+|++||+|..+. +.++ +.+++++|++||.|. ++|.+++.. .+....
T Consensus 22 ~f~~~G~i~~v~-------------------~~~~----~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 22 LFGSIGEIESCK-------------------LVRD----KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp HHHTTSCEEEEE-------------------EEEC----TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHHhcCCeEEEE-------------------EEeC----CCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 689999998866 4454 456889999999996 577787763 221111
Q ss_pred --CCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 331 --PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 331 --~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
........++|||++ |+..+++++|+++|++||.|.+++++.+ +++|||||+|.+.++|++|++.+|+..++|
T Consensus 79 ~~~~~~~~~~~~l~v~n-l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 79 ARPSSASIRDANLYVSG-LPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp CCCCCGGGTTCEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred cCCCcccCCCCcEEECC-CCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 111223567999999 8999999999999999999999999976 368999999999999999999999999999
Q ss_pred eE--EEEEec
Q 012831 405 AR--VLVKPY 412 (455)
Q Consensus 405 r~--v~Vk~a 412 (455)
+. |.|++|
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 75 888875
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.76 E-value=4e-18 Score=165.77 Aligned_cols=140 Identities=11% Similarity=0.091 Sum_probs=112.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh-CCCCCC--------
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN-RNERSD-------- 330 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~-r~~r~d-------- 330 (455)
+|++||.|..+. +.++ +.+++++|++||.|. ++|.+++.. .+...+
T Consensus 115 ~f~~~G~i~~~~-------------------i~~~----~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 115 LVRPFGSLERCF-------------------LVYS----ERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp HHGGGSCEEEEE-------------------EEEC----TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHHhcCCeeEEE-------------------EEee----CCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 789999998765 4444 456889999999996 577777743 211111
Q ss_pred -----CCCCCCCcceEEEeCCCCCCC-CHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCee
Q 012831 331 -----PGPIVTGSRQIYLTFPAESTF-TEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHF 401 (455)
Q Consensus 331 -----~~~~~~~~rkIfVg~~l~~~~-teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~ 401 (455)
........++|||+| |+..+ |+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|+..+|++.
T Consensus 172 a~~~~~~~~~~~~~~l~v~n-lp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 250 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDR-LPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLS 250 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEEC-CCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCCCCcccCCccEEEEec-CCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Confidence 111223578999999 89995 99999999999999999999986 578999999999999999999999999
Q ss_pred EcCeEEEEEecccCccchhHHHhh
Q 012831 402 VCGARVLVKPYREKSKLVDRKYQE 425 (455)
Q Consensus 402 I~Gr~v~Vk~a~~k~k~~~~~~~~ 425 (455)
++|+.|.|.++.++........++
T Consensus 251 ~~g~~l~v~~a~~~~~~~~~~~~~ 274 (284)
T 3smz_A 251 LGGSHLRVSFCAPGPPGRSMLAAL 274 (284)
T ss_dssp ETTEECEEEECCSSSCHHHHHHHH
T ss_pred cCCeEEEEEEecCCCcccchhhhh
Confidence 999999999999988766555443
No 11
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=4.1e-18 Score=152.61 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=92.9
Q ss_pred CCccceeEEcc--ccHHHHHhhCC----C---------CC-----------CCCCCCCCcceEEEeCCCCCCCCHHHHHH
Q 012831 305 RPHGQHAVILA--EDAPKYLENRN----E---------RS-----------DPGPIVTGSRQIYLTFPAESTFTEDDVSN 358 (455)
Q Consensus 305 rsrG~gfV~f~--eda~k~~~~r~----~---------r~-----------d~~~~~~~~rkIfVg~~l~~~~teedLr~ 358 (455)
+++||+||.|. ++|.+++.... . .. .........++|||++ |++.+|+++|++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n-l~~~~~~~~l~~ 89 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDN-LTYRTSPDTLRR 89 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEES-CCTTCCHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeC-CCCCCCHHHHHH
Confidence 68999999996 56666653210 0 00 0111223578999999 899999999999
Q ss_pred HhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCccc
Q 012831 359 YFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418 (455)
Q Consensus 359 ~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k~ 418 (455)
+|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|.+++++...
T Consensus 90 ~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 90 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp HHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred HHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999986 58999999999999999999999999999999999999987554
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.75 E-value=3.9e-18 Score=152.68 Aligned_cols=109 Identities=9% Similarity=0.205 Sum_probs=90.6
Q ss_pred CCCccceeEEcc--ccHHHHHhhCCCCCC----------CCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEe
Q 012831 304 DRPHGQHAVILA--EDAPKYLENRNERSD----------PGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRI 371 (455)
Q Consensus 304 grsrG~gfV~f~--eda~k~~~~r~~r~d----------~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I 371 (455)
++++||+||.|. ++|.+++...+.... ........++|||+| |+..+|+++|+++|++||+|..|++
T Consensus 48 ~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~n-lp~~~t~~~l~~~f~~~G~v~~v~i 126 (172)
T 2g4b_A 48 NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGG-LPNYLNDDQVKELLTSFGPLKAFNL 126 (172)
T ss_dssp ETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCCCTTTTCEEEEC-CCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred cCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCCCCCCCEEEEEc-CCCcCCHHHHHHHHHhcCCceEEEE
Confidence 567899999996 678888843222111 111223468999999 8999999999999999999999999
Q ss_pred ecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 372 PCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 372 ~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
+.+ +++|||||+|.+.++|++|++.+|++.++|++|.|++|.
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 127 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 986 468999999999999999999999999999999999873
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.74 E-value=2.6e-18 Score=154.78 Aligned_cols=113 Identities=18% Similarity=0.106 Sum_probs=91.8
Q ss_pred ccCCCccceeEEcc--ccHHHHHhhCCCCCC-------C-----CCCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCce
Q 012831 302 LIDRPHGQHAVILA--EDAPKYLENRNERSD-------P-----GPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVD 367 (455)
Q Consensus 302 ~tgrsrG~gfV~f~--eda~k~~~~r~~r~d-------~-----~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~ 367 (455)
.+++++||+||.|. ++|.+++...+.... . .......++|||+| |+..+|+++|+++|++||.|.
T Consensus 49 ~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~n-lp~~~t~~~l~~~F~~~g~v~ 127 (175)
T 1fje_B 49 RTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKN-LSFNITEDELKEVFEDALEIR 127 (175)
T ss_dssp EEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEES-CCSSCCHHHHHHHCTTCSEEE
T ss_pred CCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccccccCCEEEEeC-CCCCCCHHHHHHHHHhcCeEE
Confidence 45789999999996 577788753221111 0 11223567999999 899999999999999999998
Q ss_pred eEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCc
Q 012831 368 DVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (455)
Q Consensus 368 ~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~ 416 (455)
.+ ....+++|||||+|.+.++|++|++.+|++.|+|+.|.|.++.+|.
T Consensus 128 ~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 128 LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp EE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred Ee-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 87 3333789999999999999999999999999999999999999874
No 14
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=4.2e-18 Score=145.93 Aligned_cols=84 Identities=17% Similarity=0.441 Sum_probs=74.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
.+.+|||+| |++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|+++.|+|+.|.|.++++
T Consensus 4 ~~~~lfV~n-Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKN-LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECC-CCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 356899999 8999999999999999999999999987 4689999999999999999999999999999999999998
Q ss_pred CccchhH
Q 012831 415 KSKLVDR 421 (455)
Q Consensus 415 k~k~~~~ 421 (455)
+......
T Consensus 83 ~~~~~~~ 89 (115)
T 4f25_A 83 RKEREAE 89 (115)
T ss_dssp CCC----
T ss_pred ccccccc
Confidence 7654433
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=8.2e-18 Score=153.97 Aligned_cols=114 Identities=10% Similarity=0.195 Sum_probs=93.8
Q ss_pred cCCCccceeEEcc--ccHHHHHhhCCCCCC----------CC--------------------CCCCCcceEEEeCCCCCC
Q 012831 303 IDRPHGQHAVILA--EDAPKYLENRNERSD----------PG--------------------PIVTGSRQIYLTFPAEST 350 (455)
Q Consensus 303 tgrsrG~gfV~f~--eda~k~~~~r~~r~d----------~~--------------------~~~~~~rkIfVg~~l~~~ 350 (455)
+++++||+||.|. ++|.+++...+.... .. ......++|||++ |+..
T Consensus 47 ~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n-l~~~ 125 (198)
T 2yh0_A 47 INQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGG-LPNY 125 (198)
T ss_dssp EETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEEC-CCTT
T ss_pred ecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeC-CCCC
Confidence 3567999999996 678888742211000 00 0013568999999 8999
Q ss_pred CCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCcc
Q 012831 351 FTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSK 417 (455)
Q Consensus 351 ~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k 417 (455)
+++++|+++|++||.|.+|+++.+ +++|||||+|.+.++|++|++.+|+..|+|+.|.|.++.++.+
T Consensus 126 ~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 126 LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999976 3689999999999999999999999999999999999998765
No 16
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=7.4e-18 Score=141.24 Aligned_cols=77 Identities=16% Similarity=0.312 Sum_probs=73.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..++|||+| ||.++|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.+|+..|+|+.|.|++|
T Consensus 18 ~gt~lfV~n-Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNY-LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEES-CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 467899999 8999999999999999999999999986 57899999999999999999999999999999999999
Q ss_pred cc
Q 012831 413 RE 414 (455)
Q Consensus 413 ~~ 414 (455)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 86
No 17
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.73 E-value=5.5e-18 Score=139.63 Aligned_cols=80 Identities=24% Similarity=0.352 Sum_probs=73.7
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccC-CceeEEeecc----CCCCeEEEEECCHHHHHHHHHhc-CCeeEcCeEEEEEe
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYG-PVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKG-NPHFVCGARVLVKP 411 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG-~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~l-n~~~I~Gr~v~Vk~ 411 (455)
+++|||+| ||.++||++|+++|++|| +|.+|+|++| ++||||||+|.+.++|++|++.+ ++..++|++|.|.+
T Consensus 1 S~~i~v~n-Lp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRM-LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEET-CCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 47899999 999999999999999999 8999999987 58999999999999999999986 56789999999999
Q ss_pred cccCccc
Q 012831 412 YREKSKL 418 (455)
Q Consensus 412 a~~k~k~ 418 (455)
+.++.+.
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9988764
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=5e-17 Score=157.90 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=70.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEc-CeEEEEEecc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC-GARVLVKPYR 413 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~-Gr~v~Vk~a~ 413 (455)
..++|||+| |+..+|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++|++.+|+..|+ |+.|.|.|++
T Consensus 206 ~~~~l~v~n-l~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTN-LPEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeC-CCCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 457899999 89999999999999999999999999765 699999999999999999999999999 9999999986
No 19
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=141.34 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=76.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
+..++|||++ |++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 4 ~p~~~lfV~n-L~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFAR-LNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEES-CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEEC-CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4578999999 9999999999999999999999999987 5799999999999999999999999999999999999
Q ss_pred cccCccch
Q 012831 412 YREKSKLV 419 (455)
Q Consensus 412 a~~k~k~~ 419 (455)
+..+.+..
T Consensus 83 a~~~~~~~ 90 (110)
T 3s8s_A 83 DIKGQQRM 90 (110)
T ss_dssp CSTTHHHH
T ss_pred CCCCcHHH
Confidence 97665433
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.71 E-value=5.7e-17 Score=157.65 Aligned_cols=136 Identities=14% Similarity=0.172 Sum_probs=110.9
Q ss_pred CCccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHH
Q 012831 251 NPISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPK 320 (455)
Q Consensus 251 ~p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k 320 (455)
..+.|.+||.. +|++|| |+.+. +++++||+||.|. ++|.+
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~-----------------------------~~~~~g~afV~f~~~~~A~~ 72 (284)
T 3smz_A 23 RKILIRGLPGDVTNQEVHDLLSDYE-LKYCF-----------------------------VDKYKGTAFVTLLNGEQAEA 72 (284)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSC-EEEEE-----------------------------EETTTTEEEEEESSHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcC-CEEEE-----------------------------EecCCCEEEEEeCCHHHHHH
Confidence 35788999865 889999 77654 1567899999996 57778
Q ss_pred HHhh-CCCCCCCC----CCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHH
Q 012831 321 YLEN-RNERSDPG----PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVK 391 (455)
Q Consensus 321 ~~~~-r~~r~d~~----~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~ 391 (455)
++.. .+...... ...+..++|||+| |+..+|+++|+++|++||.|..|+++.+ +++|||||+|.+.++|+
T Consensus 73 A~~~l~~~~~~g~~i~v~~~~~~~~l~v~n-lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 151 (284)
T 3smz_A 73 AINAFHQSRLRERELSVQLQPTDALLCVAN-LPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAA 151 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCCSCEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred HHHHcCCCeeCCeEEEEEecCCCCEEEEcC-CCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHH
Confidence 8753 22211110 1134678999999 8999999999999999999999999976 47899999999999999
Q ss_pred HHHHhcCCeeEcCeEEEEEecccCcc
Q 012831 392 MILAKGNPHFVCGARVLVKPYREKSK 417 (455)
Q Consensus 392 ~Al~~ln~~~I~Gr~v~Vk~a~~k~k 417 (455)
+|++.+++..++|+.|.|.++.++..
T Consensus 152 ~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 152 RAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHHHHHTTCEETTEECEEEECCGGGC
T ss_pred HHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 99999999999999999999987654
No 21
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.70 E-value=6.3e-17 Score=157.92 Aligned_cols=143 Identities=13% Similarity=0.236 Sum_probs=110.6
Q ss_pred CCCccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHH
Q 012831 250 GNPISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAP 319 (455)
Q Consensus 250 ~~p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~ 319 (455)
...+.|.+||.. +|++||+|..+. +++++ ..++|++||.|. ++|.
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~-------------------i~~~~------~~~~g~afV~f~~~~~A~ 95 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVD-------------------VADSL------KKNFRFARIEFARYDGAL 95 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEE-------------------EEECT------TSSSEEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------------------EEECC------CCCcEEEEEEECCHHHHH
Confidence 345788888865 899999998876 44442 225799999996 6788
Q ss_pred HHHhhCCCCCCCCC---CCCCcceEEEeCCCCCCCCHHHHHHHhhccC-CceeEEeecc---CCCCeEEEEECCHHHHHH
Q 012831 320 KYLENRNERSDPGP---IVTGSRQIYLTFPAESTFTEDDVSNYFNTYG-PVDDVRIPCQ---QKRMFGFVTFASADTVKM 392 (455)
Q Consensus 320 k~~~~r~~r~d~~~---~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG-~I~~V~I~~d---k~RGfaFVtF~~~e~A~~ 392 (455)
+++...+....... .....++|||+| |+..+|+++|+++|++|| +|..|+|+.+ +++|||||+|.+.++|++
T Consensus 96 ~A~~~~~~~~~g~~i~v~~~~~~~l~v~n-lp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 96 AAITKTHKVVGQNEIIVSHLTECTLWMTN-FPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp HHHTTTTCEETTEECEEEECCSCEEEEEC-CCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHH
T ss_pred HHHHhCCcEeCCcEEEEEECCCCEEEEEC-CCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHH
Confidence 88853221111100 123678999999 899999999999999999 9999999986 489999999999999999
Q ss_pred HHHhcCCeeEcCeEEEEEecccCccc
Q 012831 393 ILAKGNPHFVCGARVLVKPYREKSKL 418 (455)
Q Consensus 393 Al~~ln~~~I~Gr~v~Vk~a~~k~k~ 418 (455)
|++.++++.|+|+.|.|+++.++.+.
T Consensus 175 A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 175 CVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHHTTCEETTEECEEEECCCC---
T ss_pred HHHHhCCCEeCCcEEEEEECCCCccc
Confidence 99999999999999999999887653
No 22
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.70 E-value=7.1e-17 Score=157.58 Aligned_cols=129 Identities=17% Similarity=0.279 Sum_probs=99.9
Q ss_pred HHhhcC-ceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh-CCCCCC-------
Q 012831 262 YYEKYG-KVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN-RNERSD------- 330 (455)
Q Consensus 262 yF~kfG-~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~-r~~r~d------- 330 (455)
+|++|| .|..+. +.++ ..++++||+||.|. ++|.+++.. .+....
T Consensus 137 ~f~~~G~~i~~v~-------------------i~~~-----~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 137 LLQDINVVALSIR-------------------LPSL-----RFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp HHHHTTCCCCEEE-------------------CC------------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred HHHHhCCCeEEEE-------------------EEeC-----CCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 689999 888765 3333 12678999999996 577777762 211111
Q ss_pred ---CC-------CCCCCcceEEEeCCCCCC-CCHHHHHHHhhccCCceeEEeecc-----CCCCeEEEEECCHHHHHHHH
Q 012831 331 ---PG-------PIVTGSRQIYLTFPAEST-FTEDDVSNYFNTYGPVDDVRIPCQ-----QKRMFGFVTFASADTVKMIL 394 (455)
Q Consensus 331 ---~~-------~~~~~~rkIfVg~~l~~~-~teedLr~~Fs~fG~I~~V~I~~d-----k~RGfaFVtF~~~e~A~~Al 394 (455)
.. ......++|||+| |+.. +|+++|+++|++||.|..|+|+.+ +++|||||+|.+.++|++|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~n-lp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRN-LSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEE-ECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEEC-CCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 00 1223568999999 8999 999999999999999999999975 35899999999999999999
Q ss_pred HhcCCeeEcCeEEEEEecccCc
Q 012831 395 AKGNPHFVCGARVLVKPYREKS 416 (455)
Q Consensus 395 ~~ln~~~I~Gr~v~Vk~a~~k~ 416 (455)
.+|++.|+|+.|.|.++++|.
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCCC
T ss_pred -HhcCCEECCcEEEEEEecCCC
Confidence 999999999999999999874
No 23
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=6.1e-17 Score=129.32 Aligned_cols=79 Identities=13% Similarity=0.211 Sum_probs=74.0
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
+.+|||+| ||.++++++|+++|++||+|.+|+++.+ +++|||||+|.+.++|++|++.+|++.++|+.|.|.+++
T Consensus 1 t~~l~V~n-lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGD-LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEEC-CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 36899999 8999999999999999999999999976 468999999999999999999999999999999999999
Q ss_pred cCcc
Q 012831 414 EKSK 417 (455)
Q Consensus 414 ~k~k 417 (455)
++.+
T Consensus 80 ~~~~ 83 (83)
T 3md1_A 80 KLEH 83 (83)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8753
No 24
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=131.53 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=76.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||+| |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.+
T Consensus 6 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRN-LSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEEC-CCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4678999999 8999999999999999999999999986 4789999999999999999999999999999999999
Q ss_pred cccCccc
Q 012831 412 YREKSKL 418 (455)
Q Consensus 412 a~~k~k~ 418 (455)
++++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9988654
No 25
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=6.6e-17 Score=130.25 Aligned_cols=80 Identities=14% Similarity=0.285 Sum_probs=72.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
+..++|||+| |+..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.++|+.|.|.+
T Consensus 4 ~~~~~l~v~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGD-LSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeC-CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3578999999 8999999999999999999999999986 4789999999999999999999999999999999999
Q ss_pred cccCc
Q 012831 412 YREKS 416 (455)
Q Consensus 412 a~~k~ 416 (455)
+++|.
T Consensus 83 a~~kp 87 (87)
T 3bs9_A 83 ATRKP 87 (87)
T ss_dssp EC---
T ss_pred cCCCC
Confidence 98763
No 26
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.3e-16 Score=131.52 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=76.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
....++|||++ |+..+|+++|+++|++||+|.+|+|+.+ .+||||||+|.+.++|++|++.++++.|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGN-LSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEES-CCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeC-CCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 34678999999 8999999999999999999999999987 47899999999999999999999999999999999999
Q ss_pred ccCccc
Q 012831 413 REKSKL 418 (455)
Q Consensus 413 ~~k~k~ 418 (455)
+++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqi_A 91 TTPSSQ 96 (103)
T ss_dssp CCTTCC
T ss_pred CCCccc
Confidence 986643
No 27
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=1.1e-16 Score=128.50 Aligned_cols=79 Identities=22% Similarity=0.376 Sum_probs=73.5
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
.....++|||+| |+.++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.++|+.|.|
T Consensus 3 ~~~~~~~l~V~n-l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 3 MATTKRVLYVGG-LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp CCCCSSEEEEEC-CCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEEC-CCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345688999999 8999999999999999999999999876 47999999999999999999999999999999999
Q ss_pred Eecc
Q 012831 410 KPYR 413 (455)
Q Consensus 410 k~a~ 413 (455)
++++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9985
No 28
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=132.63 Aligned_cols=85 Identities=20% Similarity=0.318 Sum_probs=78.3
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
.....++|||++ |+..+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|
T Consensus 8 ~~~~~~~l~V~n-Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGG-LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEES-CCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeC-CCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345688999999 8999999999999999999999999886 47999999999999999999999999999999999
Q ss_pred EecccCccch
Q 012831 410 KPYREKSKLV 419 (455)
Q Consensus 410 k~a~~k~k~~ 419 (455)
.+++++....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9999876543
No 29
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.68 E-value=8.5e-17 Score=143.34 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=75.4
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
....++|||+| |++.+|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|++.+|++.|+|+.|.|.++++
T Consensus 70 ~~~~~~l~V~n-l~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 70 CPLDCKVYVGN-LGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp STTSCEEEEES-CCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 34678999999 8999999999999999999999999987 699999999999999999999999999999999999998
Q ss_pred Cc
Q 012831 415 KS 416 (455)
Q Consensus 415 k~ 416 (455)
++
T Consensus 148 ~~ 149 (150)
T 2i2y_A 148 EK 149 (150)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-16 Score=130.54 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=77.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
....++|||++ |+..+|+++|+++|++||+|.+|+|+.+ .++|||||+|.+.++|++|++.+|++.|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSN-IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEES-CCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 44678999999 8999999999999999999999999987 46999999999999999999999999999999999999
Q ss_pred ccCccch
Q 012831 413 REKSKLV 419 (455)
Q Consensus 413 ~~k~k~~ 419 (455)
+++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cq3_A 91 TARVMTN 97 (103)
T ss_dssp CSSCCCC
T ss_pred ccCCCCC
Confidence 9886543
No 31
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=2.3e-16 Score=130.08 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=77.2
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
+++|||+| |+..+++++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.+|+..++|+.|.|.++.
T Consensus 2 ~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGS-IPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEES-CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEEC-CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 68999999 8999999999999999999999999986 469999999999999999999999999999999999999
Q ss_pred cCccchhH
Q 012831 414 EKSKLVDR 421 (455)
Q Consensus 414 ~k~k~~~~ 421 (455)
+++.....
T Consensus 81 ~~~~~~~~ 88 (96)
T 2x1f_A 81 NSDISGVS 88 (96)
T ss_dssp CSSGGGHH
T ss_pred CCCCCCcc
Confidence 98765543
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=131.91 Aligned_cols=83 Identities=24% Similarity=0.393 Sum_probs=76.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||++ |+..+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++ ++++.|+|+.|.|+
T Consensus 7 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 7 GSKSNKIFVGG-IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CSSCCEEEEES-CCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 45678999999 8999999999999999999999999986 479999999999999999999 79999999999999
Q ss_pred ecccCccch
Q 012831 411 PYREKSKLV 419 (455)
Q Consensus 411 ~a~~k~k~~ 419 (455)
+++++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 999876543
No 33
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=128.10 Aligned_cols=79 Identities=15% Similarity=0.318 Sum_probs=74.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccC-----CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ-----KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk-----~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
..++|||+| |+.++|+++|+++|++||.|.+|+|+.++ ++|||||+|.+.++|++|++.+|+..++|+.|.|.+
T Consensus 3 ~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGR-LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEEC-CCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 468999999 89999999999999999999999999873 899999999999999999999999999999999999
Q ss_pred cccCc
Q 012831 412 YREKS 416 (455)
Q Consensus 412 a~~k~ 416 (455)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 98764
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=131.07 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=76.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeE-Eeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV-RIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V-~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
..++|||++ |+..+|+++|+++|++||.|.+| +|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.+
T Consensus 4 ~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGN-LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEEC-CCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 578999999 89999999999999999999999 99986 4789999999999999999999999999999999999
Q ss_pred cccCccch
Q 012831 412 YREKSKLV 419 (455)
Q Consensus 412 a~~k~k~~ 419 (455)
+.++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99876543
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=131.67 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=77.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||++ |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTN-LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEES-CCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999 8999999999999999999999999976 468999999999999999999999999999999999
Q ss_pred ecccCccc
Q 012831 411 PYREKSKL 418 (455)
Q Consensus 411 ~a~~k~k~ 418 (455)
+++++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99987654
No 36
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=132.33 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=77.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||++ |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.++++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 12 RNQDATVYVGG-LDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCTTTEEEEEC-CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34678999999 8999999999999999999999999986 478999999999999999999999999999999999
Q ss_pred ecccCccc
Q 012831 411 PYREKSKL 418 (455)
Q Consensus 411 ~a~~k~k~ 418 (455)
+++++.+.
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99987654
No 37
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.4e-16 Score=129.53 Aligned_cols=81 Identities=10% Similarity=0.123 Sum_probs=75.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHH----HHhhccCCceeEEeeccC-CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVS----NYFNTYGPVDDVRIPCQQ-KRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr----~~Fs~fG~I~~V~I~~dk-~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
...++|||+| |++.+++++|+ ++|++||+|.+|+|+.++ .||||||+|.+.++|++|++.+|+..|+|+.|+|.
T Consensus 7 ~~~~~l~V~n-L~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSN-IDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEES-CCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3567999999 99999999999 999999999999999873 38999999999999999999999999999999999
Q ss_pred ecccCcc
Q 012831 411 PYREKSK 417 (455)
Q Consensus 411 ~a~~k~k 417 (455)
+++++..
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987754
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.7e-16 Score=127.17 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=73.8
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
..+..++|||+| |+..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|
T Consensus 12 ~~~~~~~l~V~n-lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSN-LPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEES-CCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEEC-CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345788999999 8999999999999999999999999986 46899999999999999999999999999999999
Q ss_pred Eecc
Q 012831 410 KPYR 413 (455)
Q Consensus 410 k~a~ 413 (455)
.+|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 39
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=136.88 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=75.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcC--CeeEcCeEEEEEec
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN--PHFVCGARVLVKPY 412 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln--~~~I~Gr~v~Vk~a 412 (455)
.+..++|||+| |++++||++|+++|++||+|.+|+|+.+ ||||||+|++.++|++|++.++ +..|+|++|.|.++
T Consensus 13 ~~~~~~LfV~n-Lp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRK-LPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECS-CCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45678999999 9999999999999999999999999984 8999999999999999999764 58999999999999
Q ss_pred ccCccchh
Q 012831 413 REKSKLVD 420 (455)
Q Consensus 413 ~~k~k~~~ 420 (455)
+++.....
T Consensus 90 ~~~~~~~~ 97 (105)
T 1sjq_A 90 NHKELKTD 97 (105)
T ss_dssp SSSSCCCT
T ss_pred CCCCCCcc
Confidence 98765543
No 40
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=2e-16 Score=134.49 Aligned_cols=84 Identities=14% Similarity=0.295 Sum_probs=77.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||++ |+..+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.++++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGD-LSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34678999999 8999999999999999999999999986 468999999999999999999999999999999999
Q ss_pred ecccCccch
Q 012831 411 PYREKSKLV 419 (455)
Q Consensus 411 ~a~~k~k~~ 419 (455)
+++++....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 999887654
No 41
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=129.92 Aligned_cols=82 Identities=22% Similarity=0.395 Sum_probs=76.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
+..++|||++ |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.+
T Consensus 3 ~~~~~l~v~n-lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGS-LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEES-CCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4578999999 8999999999999999999999999986 4789999999999999999999999999999999999
Q ss_pred cccCccc
Q 012831 412 YREKSKL 418 (455)
Q Consensus 412 a~~k~k~ 418 (455)
++++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9987653
No 42
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=2.4e-16 Score=149.67 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=71.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccC-CceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEc-CeEEEEEeccc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYG-PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC-GARVLVKPYRE 414 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG-~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~-Gr~v~Vk~a~~ 414 (455)
..++|||+| |+..+++++|+++|++|| .|..|+|+.+ .+|||||+|.+.++|++|++.+|+..++ |+.|.|.++++
T Consensus 150 ~~~~l~V~n-lp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 150 PSATLHLSN-IPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCSEEEEEC-CCTTCCHHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCEEEEeC-CCccCCHHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 368999999 899999999999999999 9999999653 5899999999999999999999999999 99999999987
Q ss_pred C
Q 012831 415 K 415 (455)
Q Consensus 415 k 415 (455)
+
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 5
No 43
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=132.38 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=76.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
....++|||++ |+..+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.+++
T Consensus 19 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGN-LPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34678999999 8999999999999999999999999887 569999999999999999999999999999999999999
Q ss_pred cCccc
Q 012831 414 EKSKL 418 (455)
Q Consensus 414 ~k~k~ 418 (455)
++.+.
T Consensus 98 ~~~~~ 102 (109)
T 1x4a_A 98 SGRGT 102 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 44
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.6e-16 Score=131.68 Aligned_cols=84 Identities=14% Similarity=0.255 Sum_probs=77.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcC------CeeEcC
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGN------PHFVCG 404 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln------~~~I~G 404 (455)
....++|||++ |++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+| ++.|+|
T Consensus 12 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRN-LSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCEEEES-CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCCEEEEEC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34678999999 8999999999999999999999999987 579999999999999999999999 999999
Q ss_pred eEEEEEecccCccch
Q 012831 405 ARVLVKPYREKSKLV 419 (455)
Q Consensus 405 r~v~Vk~a~~k~k~~ 419 (455)
+.|.|.++.++....
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999999876543
No 45
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=130.87 Aligned_cols=81 Identities=10% Similarity=0.191 Sum_probs=75.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
...++|||++ |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.++
T Consensus 15 ~~~~~l~v~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISG-LPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEES-CCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4578999999 8999999999999999999999999986 46899999999999999999999999999999999999
Q ss_pred ccCcc
Q 012831 413 REKSK 417 (455)
Q Consensus 413 ~~k~k 417 (455)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98764
No 46
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=146.12 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=71.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccC-CceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEc-CeEEEEEeccc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYG-PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC-GARVLVKPYRE 414 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG-~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~-Gr~v~Vk~a~~ 414 (455)
..++|||+| |+..+|+++|+++|++|| .|.+|+|+.+ .+|||||+|.+.++|++|++.+|+..++ |+.|.|.++++
T Consensus 119 ~~~~l~v~n-l~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 119 PSATLHLSN-IPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCEEEECC-CCTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CccEEEEeC-CCCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 478999999 899999999999999999 9999999664 4899999999999999999999999999 99999999987
Q ss_pred C
Q 012831 415 K 415 (455)
Q Consensus 415 k 415 (455)
+
T Consensus 197 ~ 197 (198)
T 1qm9_A 197 T 197 (198)
T ss_dssp C
T ss_pred c
Confidence 5
No 47
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=3e-16 Score=134.87 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=74.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccC-CceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYG-PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG-~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
.+...+|||+| |++++|+++|+++|++|| +|..|.|+.++++|||||+|.+.++|++|++.+|+..|+|+.|.|+++.
T Consensus 25 p~~~~~l~Vgn-Lp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 25 PAKRYRITMKN-LPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCCEEEEEEC-SSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCEEEEEC-CCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 34568999999 999999999999999999 9999999877789999999999999999999999999999999999987
Q ss_pred cCc
Q 012831 414 EKS 416 (455)
Q Consensus 414 ~k~ 416 (455)
.+.
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 553
No 48
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=132.58 Aligned_cols=83 Identities=24% Similarity=0.273 Sum_probs=76.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||++ |+..+|+++|+++|++||+|.+|.|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 10 ~~~~~~l~V~n-Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 10 VDGMITLKVDN-LTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CSCCCEEEEES-CCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCeEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34678999999 8999999999999999999999999986 479999999999999999999999999999999999
Q ss_pred ecccCccc
Q 012831 411 PYREKSKL 418 (455)
Q Consensus 411 ~a~~k~k~ 418 (455)
+++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99987654
No 49
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=130.84 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=75.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
....++|||+| |++.+|+++|+++|++||.|. +.++.++++|||||+|.+.++|++|++.+|++.|+|+.|.|.++++
T Consensus 16 ~~~~~~l~V~n-L~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 16 APLAADVYVGN-LPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SCCCCEEEEEC-CCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCEEEEeC-CCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 34678999999 899999999999999999997 7888888999999999999999999999999999999999999998
Q ss_pred Ccc
Q 012831 415 KSK 417 (455)
Q Consensus 415 k~k 417 (455)
+++
T Consensus 94 ~~~ 96 (97)
T 2e5j_A 94 QRD 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 50
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=3.9e-17 Score=136.48 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=75.3
Q ss_pred CcceEEEeCCCCC------CCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcC-e
Q 012831 337 GSRQIYLTFPAES------TFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCG-A 405 (455)
Q Consensus 337 ~~rkIfVg~~l~~------~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~G-r 405 (455)
..++|||+| ||. ++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+|++.|+| +
T Consensus 5 ~~~~vfV~n-Lp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNG-APVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEES-CCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeC-CCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 367999999 899 9999999999999999999999987 479999999999999999999999999999 9
Q ss_pred EEEEEecccCccc
Q 012831 406 RVLVKPYREKSKL 418 (455)
Q Consensus 406 ~v~Vk~a~~k~k~ 418 (455)
.|.|.++.++.+.
T Consensus 84 ~l~V~~a~~~~~~ 96 (100)
T 3ns6_A 84 RLFLYTMKDVERY 96 (100)
T ss_dssp BCEEEESHHHHHH
T ss_pred EEEEEECchhhhh
Confidence 9999999886553
No 51
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=132.08 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=70.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCC--ceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCe----eEcCe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGP--VDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPH----FVCGA 405 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~--I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~----~I~Gr 405 (455)
..-.||||+| |++++|+++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++.+|+. .|+|+
T Consensus 7 ~~m~tlfV~n-L~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRN-IAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEES-CCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeC-CCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 3467999999 9999999999999999995 679999987 58999999999999999999998764 69999
Q ss_pred EEEEEeccc
Q 012831 406 RVLVKPYRE 414 (455)
Q Consensus 406 ~v~Vk~a~~ 414 (455)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 52
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=131.77 Aligned_cols=84 Identities=23% Similarity=0.349 Sum_probs=77.7
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
.....++|||++ |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|
T Consensus 8 ~~~~~~~l~v~n-Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGG-LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEES-CCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEEC-CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 445688999999 8999999999999999999999999986 47899999999999999999999999999999999
Q ss_pred EecccCccc
Q 012831 410 KPYREKSKL 418 (455)
Q Consensus 410 k~a~~k~k~ 418 (455)
.+++++.+.
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999987653
No 53
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=2.3e-16 Score=134.26 Aligned_cols=83 Identities=17% Similarity=0.304 Sum_probs=76.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
.+..++|||++ |+.++|+++|+++|++||.|.+|+|+.+ ++||||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYH-LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEES-CCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34678999999 8999999999999999999999999976 468999999999999999999999999999999999
Q ss_pred ecccCccc
Q 012831 411 PYREKSKL 418 (455)
Q Consensus 411 ~a~~k~k~ 418 (455)
+++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99987654
No 54
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=133.19 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=76.1
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
.....++|||+| |+..+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.++++.|+|+.|.|.+
T Consensus 25 ~~~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSN-IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEES-CCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEEC-CCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344678999999 8999999999999999999999999987 4699999999999999999999999999999999999
Q ss_pred cccCc
Q 012831 412 YREKS 416 (455)
Q Consensus 412 a~~k~ 416 (455)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98863
No 55
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=1.4e-16 Score=154.27 Aligned_cols=134 Identities=18% Similarity=0.292 Sum_probs=104.4
Q ss_pred ccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHH
Q 012831 253 ISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYL 322 (455)
Q Consensus 253 ~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~ 322 (455)
+.|.+||.. +|++||.|..+. + .+++||+||.|. ++|.+++
T Consensus 25 l~V~nLp~~~te~~l~~~F~~~G~i~~v~-------------------i----------~~~kg~afV~f~~~~~A~~A~ 75 (261)
T 3sde_A 25 LFVGNLPTDITEEDFKRLFERYGEPSEVF-------------------I----------NRDRGFGFIRLESRTLAEIAK 75 (261)
T ss_dssp EEEESCCTTCCHHHHHHHTGGGCCCSEEE-------------------E----------ETTTTEEEEECSSHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCEEEEE-------------------E----------eCCCcEEEEEECCHHHHHHHH
Confidence 455566543 799999998765 1 245899999996 5777777
Q ss_pred hh-CCCCCCCC----CCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHH
Q 012831 323 EN-RNERSDPG----PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMIL 394 (455)
Q Consensus 323 ~~-r~~r~d~~----~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al 394 (455)
.. .+...... ......++|||+| |+..+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|+
T Consensus 76 ~~l~g~~i~g~~l~v~~a~~~~~l~v~n-l~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~ 154 (261)
T 3sde_A 76 AELDGTILKSRPLRIRFATHGAALTVKN-LSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKAL 154 (261)
T ss_dssp HHHTTCEETTEECEEEECCCSSEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHH
T ss_pred HHcCCcEECCceeEeeecccCCcccccC-CCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHH
Confidence 63 22211110 0123567999999 8999999999999999999999999987 57999999999999999999
Q ss_pred Hhc-CCeeEc---CeEEEEEecccCc
Q 012831 395 AKG-NPHFVC---GARVLVKPYREKS 416 (455)
Q Consensus 395 ~~l-n~~~I~---Gr~v~Vk~a~~k~ 416 (455)
..+ ++..+. |+.|.|+++.++.
T Consensus 155 ~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 155 ERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHhcCCeEEecCCCceEEEeeccccC
Confidence 998 466665 9999999998653
No 56
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=129.47 Aligned_cols=82 Identities=21% Similarity=0.342 Sum_probs=75.6
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-------CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-------QKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-------k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~ 408 (455)
...++|||+| |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 3 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKN-LNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEES-CCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3578999999 8999999999999999999999999965 3579999999999999999999999999999999
Q ss_pred EEecccCccc
Q 012831 409 VKPYREKSKL 418 (455)
Q Consensus 409 Vk~a~~k~k~ 418 (455)
|++++++.+.
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999987654
No 57
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.6e-16 Score=126.75 Aligned_cols=79 Identities=27% Similarity=0.310 Sum_probs=73.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
.+..++|||++ |+..+++++|+++|++||+|.+|.|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 12 ~~~~~~l~v~n-lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFG-LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEES-CCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEEC-CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999 8999999999999999999999999976 468999999999999999999999999999999999
Q ss_pred eccc
Q 012831 411 PYRE 414 (455)
Q Consensus 411 ~a~~ 414 (455)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9874
No 58
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=4.2e-16 Score=128.96 Aligned_cols=76 Identities=8% Similarity=0.095 Sum_probs=72.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
...+.-|||+| |++.+||++|+++|.+||+|.++++.. +||||||+|.++++|++|++.||+..+.|+.|+|+.|.
T Consensus 4 ~~~~~wL~VgN-L~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 4 AWGSSWLLLKN-LTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCCEEEEEC-CCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCccceEEEeC-CCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 34678899999 999999999999999999999999988 89999999999999999999999999999999999994
No 59
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.65 E-value=4.2e-16 Score=131.43 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=75.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||+| |+..+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.+
T Consensus 24 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTS-IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEES-CCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4578999999 8999999999999999999999999976 4689999999999999999999999999999999999
Q ss_pred cccCcc
Q 012831 412 YREKSK 417 (455)
Q Consensus 412 a~~k~k 417 (455)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 998764
No 60
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=3.2e-16 Score=128.94 Aligned_cols=85 Identities=14% Similarity=0.273 Sum_probs=78.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHH----HHhhccCCceeEEeecc-CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVS----NYFNTYGPVDDVRIPCQ-QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr----~~Fs~fG~I~~V~I~~d-k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
+..++|||+| |+..+++++|+ ++|++||.|.+|.|+.. +++|||||+|.+.++|++|++.+|++.++|+.|.|.
T Consensus 6 ~~~~~l~V~n-Lp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINN-LNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEES-CCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4678999999 89999999999 99999999999999854 578999999999999999999999999999999999
Q ss_pred ecccCccchhH
Q 012831 411 PYREKSKLVDR 421 (455)
Q Consensus 411 ~a~~k~k~~~~ 421 (455)
+++++.+...+
T Consensus 85 ~a~~~~~~~~k 95 (97)
T 1nu4_A 85 YAKTDSDIIAK 95 (97)
T ss_dssp ECSSCCTHHHH
T ss_pred EccCCCccccc
Confidence 99998766543
No 61
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=4.1e-16 Score=130.26 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcC---eEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCG---ARVL 408 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~G---r~v~ 408 (455)
.+..++|||++ |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|+..+.| +.|.
T Consensus 12 ~~~~~~l~v~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGM-LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEES-CCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 35678999999 8999999999999999999999999987 468999999999999999999999999998 9999
Q ss_pred EEecccCccc
Q 012831 409 VKPYREKSKL 418 (455)
Q Consensus 409 Vk~a~~k~k~ 418 (455)
|++++++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999987654
No 62
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=130.66 Aligned_cols=83 Identities=16% Similarity=0.335 Sum_probs=77.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
...++|||++ |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.+++
T Consensus 13 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKN-LDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEEC-CCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 4678999999 8999999999999999999999999976 679999999999999999999999999999999999999
Q ss_pred cCccch
Q 012831 414 EKSKLV 419 (455)
Q Consensus 414 ~k~k~~ 419 (455)
++.+..
T Consensus 92 ~~~~~~ 97 (103)
T 2d9p_A 92 RKEERQ 97 (103)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 63
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=6e-17 Score=132.36 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=67.8
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccC--CceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYG--PVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG--~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
.+|||+| |++++|+++|+++|++|| .|.+|+|+.+ ++||||||+|.+.++|++|++.+|++.++|+.|.|+++
T Consensus 2 ~~l~V~n-L~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGN-LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEES-CCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeC-CCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999 999999999999999999 9999999987 57899999999999999999999999999999999999
Q ss_pred ccCccc
Q 012831 413 REKSKL 418 (455)
Q Consensus 413 ~~k~k~ 418 (455)
.++...
T Consensus 81 ~~~~~~ 86 (90)
T 3p5t_L 81 NKLEHH 86 (90)
T ss_dssp ------
T ss_pred CCCccc
Confidence 887543
No 64
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=131.66 Aligned_cols=81 Identities=14% Similarity=0.241 Sum_probs=75.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||+| |+..+|+++|+++|++||+|.+|.|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|++
T Consensus 21 ~~~~~l~V~n-lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTG-VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEEC-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3578999999 8999999999999999999999999976 4689999999999999999999999999999999999
Q ss_pred cccCcc
Q 012831 412 YREKSK 417 (455)
Q Consensus 412 a~~k~k 417 (455)
+.++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 988753
No 65
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.65 E-value=5.1e-16 Score=129.90 Aligned_cols=83 Identities=12% Similarity=0.237 Sum_probs=76.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeE---cCeEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFV---CGARV 407 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I---~Gr~v 407 (455)
....++|||++ |+.++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+|+..+ .|+.|
T Consensus 10 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQ-IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEES-CCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45678999999 8999999999999999999999999986 4799999999999999999999999888 89999
Q ss_pred EEEecccCccc
Q 012831 408 LVKPYREKSKL 418 (455)
Q Consensus 408 ~Vk~a~~k~k~ 418 (455)
.|+++.++.+.
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999987653
No 66
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=134.16 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=71.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
..++|||+| ||+++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++ ++++.++|+.|.|+++.
T Consensus 10 ~~~~lfV~~-Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKG-FPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEEC-CCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEEC-CCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 468999999 9999999999999999999999999986 589999999999999999999 79999999999999877
Q ss_pred c
Q 012831 414 E 414 (455)
Q Consensus 414 ~ 414 (455)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 67
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.4e-16 Score=129.33 Aligned_cols=83 Identities=19% Similarity=0.371 Sum_probs=76.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-----CCCCeEEEEECCHHHHHHHHHhc-CCeeEcCeEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-----QKRMFGFVTFASADTVKMILAKG-NPHFVCGARVL 408 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-----k~RGfaFVtF~~~e~A~~Al~~l-n~~~I~Gr~v~ 408 (455)
....++|||++ |+..+|+++|+++|++||+|..|+|+.+ +++|||||+|.+.++|++|++.+ |++.|+|+.|.
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRN-IPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEES-CCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeC-CCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 44678999999 8999999999999999999999999876 36899999999999999999999 99999999999
Q ss_pred EEecccCccc
Q 012831 409 VKPYREKSKL 418 (455)
Q Consensus 409 Vk~a~~k~k~ 418 (455)
|.+++++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987654
No 68
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.4e-16 Score=130.02 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=72.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
+..++|||+| |+..+++++|+++|++||.|.+|+|+. +||||||+|.+.++|++|++.+|++.++|+.|.|+++++|
T Consensus 25 ~~~~~l~V~n-lp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGN-IPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEES-CCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcC-CCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 3568999999 899999999999999999999999985 8999999999999999999999999999999999999875
No 69
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=130.71 Aligned_cols=83 Identities=14% Similarity=0.085 Sum_probs=75.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
....++|||++ |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|++
T Consensus 12 ~~~~~~l~V~n-lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVAN-LDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEES-CCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34678999999 8999999999999999999999999987 4689999999999999999999999999999999999
Q ss_pred cccCccc
Q 012831 412 YREKSKL 418 (455)
Q Consensus 412 a~~k~k~ 418 (455)
+++....
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865443
No 70
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.8e-16 Score=133.54 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=75.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHH---HHhhccCCceeEEeecc-------CCCCeEEEEECCHHHHHHHHHhcCCeeEcCe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVS---NYFNTYGPVDDVRIPCQ-------QKRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr---~~Fs~fG~I~~V~I~~d-------k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr 405 (455)
...++|||+| |++++++++|+ ++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+
T Consensus 13 ~~~~~l~V~n-Lp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVG-LSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEE-ECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEEC-CCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3577999999 89999999999 99999999999999976 3459999999999999999999999999999
Q ss_pred EEEEEecccCcc
Q 012831 406 RVLVKPYREKSK 417 (455)
Q Consensus 406 ~v~Vk~a~~k~k 417 (455)
.|.|.+++++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999998863
No 71
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.3e-16 Score=123.39 Aligned_cols=76 Identities=25% Similarity=0.364 Sum_probs=71.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhc-CCeeEcCeEEEEEecc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG-NPHFVCGARVLVKPYR 413 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~l-n~~~I~Gr~v~Vk~a~ 413 (455)
....++|||+| |+..+|+++|+++|++||+|.+|+++. +||||||+|.+.++|++|++.+ +++.++|+.|.|++++
T Consensus 9 ~~~~~~l~V~~-l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGG-LGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEEC-CTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcC-CCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 35678999999 899999999999999999999999998 6899999999999999999998 9999999999999975
No 72
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.64 E-value=6.1e-16 Score=130.90 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=73.0
Q ss_pred CCCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCe--eEcCeEEEEE
Q 012831 333 PIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPH--FVCGARVLVK 410 (455)
Q Consensus 333 ~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~--~I~Gr~v~Vk 410 (455)
...+++++|||+| |++++|+++|+++|++||+|.+|+|++ .||||||+|++.++|++|++.+++. .|.|++|.|.
T Consensus 16 ~~~~ps~~l~V~N-Lp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 16 HKTPASPVVHIRG-LIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp -CCCCCSEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred ccCCCCcEEEEeC-CCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 3456789999999 999999999999999999999999987 7899999999999999999987754 5899999999
Q ss_pred ecccCc
Q 012831 411 PYREKS 416 (455)
Q Consensus 411 ~a~~k~ 416 (455)
++++|.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998764
No 73
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=5.9e-16 Score=125.12 Aligned_cols=77 Identities=23% Similarity=0.473 Sum_probs=72.2
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
.++|||+| |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|+ .++++.++|+.|.|.+++
T Consensus 6 ~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGN-VDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEES-CCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 57999999 8999999999999999999999999976 47999999999999999999 889999999999999998
Q ss_pred cCc
Q 012831 414 EKS 416 (455)
Q Consensus 414 ~k~ 416 (455)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 74
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.64 E-value=2.8e-16 Score=128.06 Aligned_cols=82 Identities=23% Similarity=0.242 Sum_probs=76.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
.+..++|||+| |+..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.++++.++|+.|.|+++
T Consensus 5 ~~~~~~l~V~n-lp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRN-LPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECS-CCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34678999999 8999999999999999999999999976 57899999999999999999999999999999999999
Q ss_pred ccCcc
Q 012831 413 REKSK 417 (455)
Q Consensus 413 ~~k~k 417 (455)
+++..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 88764
No 75
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=129.08 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=74.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcC-----eEEEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG-----ARVLVK 410 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~G-----r~v~Vk 410 (455)
...++|||+| |++++|+++|+++|++||+|.+|+|+.+ |||||+|.+.++|++||+.||++.|+| +.|.|+
T Consensus 13 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSG-LPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEES-CCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3578999999 8999999999999999999999999986 999999999999999999999999999 999999
Q ss_pred ecccCccch
Q 012831 411 PYREKSKLV 419 (455)
Q Consensus 411 ~a~~k~k~~ 419 (455)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (108)
T 1x4c_A 89 VDGPRSPSY 97 (108)
T ss_dssp ESSCCSCCC
T ss_pred eCCCCCCCC
Confidence 999876543
No 76
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.64 E-value=7.6e-16 Score=130.74 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=73.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||+| |+.++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+ ++.++|+.|.|++
T Consensus 23 ~~~~~lfV~n-Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 23 SSGCKMFIGG-LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ---CCEEEES-CCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 4678999999 8999999999999999999999999986 47999999999999999999986 5999999999999
Q ss_pred cccCccc
Q 012831 412 YREKSKL 418 (455)
Q Consensus 412 a~~k~k~ 418 (455)
+.++...
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 77
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.1e-16 Score=126.01 Aligned_cols=79 Identities=20% Similarity=0.348 Sum_probs=74.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
....++|||++ |+.++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.+|+..++|+.|.|.++++
T Consensus 5 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGN-LPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEES-CCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 34678999999 89999999999999999999999997 79999999999999999999999999999999999998
Q ss_pred Cccc
Q 012831 415 KSKL 418 (455)
Q Consensus 415 k~k~ 418 (455)
+.+.
T Consensus 80 ~~~~ 83 (90)
T 2dnq_A 80 KSKA 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 78
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.8e-16 Score=129.66 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=74.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhc--CCeeEcCeEEEEEec
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG--NPHFVCGARVLVKPY 412 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~l--n~~~I~Gr~v~Vk~a 412 (455)
.+.+++|||+| |++.+||++|+++|++||.|.+|.|+. .||||||+|++.++|++|++.+ ++..++|++|.|.++
T Consensus 12 ~~p~~~l~V~n-Lp~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRK-LPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEES-CCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 34678999999 999999999999999999999999998 4899999999999999999965 578899999999999
Q ss_pred ccCccch
Q 012831 413 REKSKLV 419 (455)
Q Consensus 413 ~~k~k~~ 419 (455)
+++....
T Consensus 89 ~~~~~~~ 95 (101)
T 2cq1_A 89 NHKELKT 95 (101)
T ss_dssp SCSSCCC
T ss_pred CcccCcC
Confidence 9876543
No 79
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-16 Score=130.72 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=77.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..++|||+| |+..+++++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.++|+.|.|.++
T Consensus 7 ~~~~l~V~n-lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGN-IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEES-CCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeC-CCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 468999999 8999999999999999999999999976 46899999999999999999999999999999999999
Q ss_pred ccCccchhHH
Q 012831 413 REKSKLVDRK 422 (455)
Q Consensus 413 ~~k~k~~~~~ 422 (455)
.++......+
T Consensus 86 ~~~~~~~~~~ 95 (104)
T 1p1t_A 86 ASEKNKEELK 95 (104)
T ss_dssp TCTTHHHHHH
T ss_pred CCccchhhhc
Confidence 9887665443
No 80
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=5.3e-16 Score=127.12 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=73.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
...++|||++ |+..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.++|+.|.|+++
T Consensus 14 ~~~~~l~v~n-lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGN-LEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEEC-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4678999999 8999999999999999999999999987 46899999999999999999999999999999999998
Q ss_pred cc
Q 012831 413 RE 414 (455)
Q Consensus 413 ~~ 414 (455)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 81
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.64 E-value=5.4e-16 Score=133.22 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=76.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
..++|||+| |+.++|+++|+++|++||.|++|.|+.+ +++|||||+|.+.++|++|++.+|+..|+|+.|.|.+++
T Consensus 6 ~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGG-LNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEEC-CTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 468999999 8999999999999999999999999986 478999999999999999999999999999999999999
Q ss_pred cCccch
Q 012831 414 EKSKLV 419 (455)
Q Consensus 414 ~k~k~~ 419 (455)
++....
T Consensus 85 ~~~~~~ 90 (116)
T 2fy1_A 85 KPSFQS 90 (116)
T ss_dssp CSSCSS
T ss_pred CCCCCC
Confidence 876543
No 82
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=4.5e-16 Score=136.76 Aligned_cols=87 Identities=9% Similarity=0.151 Sum_probs=77.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHH----HHhhccCCceeEEeecc-CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVS----NYFNTYGPVDDVRIPCQ-QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr----~~Fs~fG~I~~V~I~~d-k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
.+..++|||+| |++.+++++|+ ++|++||+|.+|.+... ++||||||+|.+.++|++|++.||+..|.|+.|.|
T Consensus 26 ~~p~~~LfV~n-L~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITN-INPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEES-CCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34578999999 89999999876 69999999999999865 78999999999999999999999999999999999
Q ss_pred EecccCccchhHH
Q 012831 410 KPYREKSKLVDRK 422 (455)
Q Consensus 410 k~a~~k~k~~~~~ 422 (455)
.+++++.....++
T Consensus 105 ~~a~~~~~~~~~~ 117 (127)
T 2a3j_A 105 TFSETPQSQVAED 117 (127)
T ss_dssp EECCCCCHHHHCC
T ss_pred EEccCcchhcccc
Confidence 9999887655443
No 83
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.6e-16 Score=130.91 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=75.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||++ |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++ .|+|+.|.|.
T Consensus 14 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGG-LPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEEC-CCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34678999999 8999999999999999999999999986 4799999999999999999999887 8999999999
Q ss_pred ecccCccc
Q 012831 411 PYREKSKL 418 (455)
Q Consensus 411 ~a~~k~k~ 418 (455)
++.++.+.
T Consensus 92 ~a~~~~~~ 99 (116)
T 2cqd_A 92 LAYLGAKP 99 (116)
T ss_dssp ESTTTCCC
T ss_pred EcccCCCc
Confidence 99876543
No 84
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.2e-16 Score=130.12 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=75.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
+..++|||++ |+..+|+++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.++++.|+|+.|.|.+++++
T Consensus 23 ~~~~~l~V~n-l~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGG-IASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEEC-CSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 3578999999 8999999999999999999999999984 899999999999999999999999999999999999987
Q ss_pred ccc
Q 012831 416 SKL 418 (455)
Q Consensus 416 ~k~ 418 (455)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 85
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.5e-16 Score=132.62 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=72.0
Q ss_pred CCcceEEEeCCCCC-CCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcC--CeeEcCeEEEEEec
Q 012831 336 TGSRQIYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN--PHFVCGARVLVKPY 412 (455)
Q Consensus 336 ~~~rkIfVg~~l~~-~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln--~~~I~Gr~v~Vk~a 412 (455)
...++|||+| |++ ++||++|+++|++||+|.+|+|+. .||||||+|++.++|++|++.++ +..|+|++|.|.++
T Consensus 13 ~p~~~l~V~n-Lp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 13 ETRRVVHIMD-FQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCEEEEES-CCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCEEEEeC-CCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 4678999999 899 999999999999999999999998 57999999999999999999876 45699999999999
Q ss_pred ccCcc
Q 012831 413 REKSK 417 (455)
Q Consensus 413 ~~k~k 417 (455)
++++.
T Consensus 90 ~~~~~ 94 (102)
T 1x4d_A 90 QKYKR 94 (102)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 87654
No 86
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=5.5e-16 Score=146.10 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=67.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCc--eeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCe----EEE
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPV--DDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGA----RVL 408 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I--~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr----~v~ 408 (455)
.+++|||+| |++++|+++|+++|++||.| .+|+++.+ +++|||||+|.+.++|.+||..||++.|.|+ ++.
T Consensus 122 p~~~l~v~N-Lp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 122 PSNVLHFFN-APLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCSEEEEEE-ECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CcceEEEeC-CCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 456899999 89999999999999999999 89999887 4569999999999999999999999999987 567
Q ss_pred EEec
Q 012831 409 VKPY 412 (455)
Q Consensus 409 Vk~a 412 (455)
||++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7764
No 87
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1e-15 Score=123.59 Aligned_cols=76 Identities=24% Similarity=0.414 Sum_probs=70.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||+| |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. +++.|+|+.|.|+
T Consensus 8 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGG-LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEEC-CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 34678999999 8999999999999999999999999976 4689999999999999999976 8899999999999
Q ss_pred ec
Q 012831 411 PY 412 (455)
Q Consensus 411 ~a 412 (455)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 88
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.2e-16 Score=127.81 Aligned_cols=82 Identities=22% Similarity=0.174 Sum_probs=75.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCce-eEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeE---
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVD-DVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGAR--- 406 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~-~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~--- 406 (455)
....++|||++ |+..+++++|+++|++||+|. +|+|+.+ +++|||||+|.+.++|++|++.+|++.++|+.
T Consensus 6 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGD-LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECS-CCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeC-CCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 34678999999 899999999999999999999 9999987 47899999999999999999999999999999
Q ss_pred -EEEEecccCcc
Q 012831 407 -VLVKPYREKSK 417 (455)
Q Consensus 407 -v~Vk~a~~k~k 417 (455)
|+|.++++...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999987643
No 89
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=8.5e-16 Score=128.40 Aligned_cols=80 Identities=14% Similarity=0.253 Sum_probs=74.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
...++|||++ |+.++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.+|++.|+|+.|.|.+++++
T Consensus 9 ~~~~~l~V~n-l~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRN-LANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEEC-CCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 4578999999 89999999999999999999999986 579999999999999999999999999999999999987
Q ss_pred ccchh
Q 012831 416 SKLVD 420 (455)
Q Consensus 416 ~k~~~ 420 (455)
.....
T Consensus 84 ~~~~~ 88 (103)
T 2dgu_A 84 DQKRK 88 (103)
T ss_dssp CCCCC
T ss_pred cccch
Confidence 76543
No 90
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.6e-16 Score=135.03 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=74.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcC--CeeEcCeEEEEEec
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN--PHFVCGARVLVKPY 412 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln--~~~I~Gr~v~Vk~a 412 (455)
.+.+++|||+| |++++||++|+++|++||+|.+|+|+.+ ||||||+|++.++|++|++.++ +..|+|++|.|.++
T Consensus 28 ~~ps~~LfVgN-Lp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRK-LPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEES-CCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 45678999999 9999999999999999999999999984 8999999999999999999876 56899999999999
Q ss_pred ccCccch
Q 012831 413 REKSKLV 419 (455)
Q Consensus 413 ~~k~k~~ 419 (455)
+++....
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 9876543
No 91
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=7.3e-16 Score=126.46 Aligned_cols=80 Identities=24% Similarity=0.402 Sum_probs=65.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
.+...+||||+ |++++||++|+++|++||+|.+|+|+.+ +||||||+|++.++|+++.. ..+.++|+.|.|+++.+
T Consensus 8 ~~~~~~l~V~~-Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGR-CTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSLCG--EDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEES-CCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHHTT--CEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHHHcC--CCcccCCEEEEEEEcCC
Confidence 34678999999 9999999999999999999999999985 79999999999999985422 25567799999999998
Q ss_pred Cccc
Q 012831 415 KSKL 418 (455)
Q Consensus 415 k~k~ 418 (455)
+...
T Consensus 84 k~~~ 87 (89)
T 3d2w_A 84 KHNK 87 (89)
T ss_dssp ----
T ss_pred CCcC
Confidence 7653
No 92
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=8.1e-16 Score=127.00 Aligned_cols=79 Identities=11% Similarity=0.183 Sum_probs=74.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEc--CeEEEEEecc
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC--GARVLVKPYR 413 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~--Gr~v~Vk~a~ 413 (455)
+..++|||++ |+..+|+++|+++|++||+|++|.++. .||||||+|.+.++|++|++.+|++.|+ |+.|.|.+++
T Consensus 15 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGG-LGPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEEC-CCSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 4578999999 899999999999999999999999988 4899999999999999999999999999 9999999999
Q ss_pred cCcc
Q 012831 414 EKSK 417 (455)
Q Consensus 414 ~k~k 417 (455)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 93
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.5e-16 Score=128.06 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=75.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
.+..++|||++ |+..+|+++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.++++.|+|+.|.|.++++
T Consensus 12 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 12 FTQRSRLFVGN-LPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCTTEEEEES-CCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 45678999999 899999999999999999999999997 689999999999999999999999999999999999998
Q ss_pred Ccc
Q 012831 415 KSK 417 (455)
Q Consensus 415 k~k 417 (455)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 94
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.3e-16 Score=129.91 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=76.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCce--------eEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEc
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVD--------DVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVC 403 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~--------~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~ 403 (455)
...++|||+| |+..+|+++|+++|++||.|. .|+|+.+ +++|||||+|.+.++|++|++.+|++.|+
T Consensus 13 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQG-LNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEEC-CCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcC-CCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 4678999999 899999999999999999999 7999987 57999999999999999999999999999
Q ss_pred CeEEEEEecccCccc
Q 012831 404 GARVLVKPYREKSKL 418 (455)
Q Consensus 404 Gr~v~Vk~a~~k~k~ 418 (455)
|+.|.|.+++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999987654
No 95
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.63 E-value=5.8e-16 Score=140.34 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=74.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccC--CceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYG--PVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG--~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
..++|||+| |++++|+++|+++|++|| .|.+|+|+.| ++||||||+|.+.++|++||+.||++.|+|+.|.|+
T Consensus 54 ~~~~lfVgn-Lp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGS-FSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEEC-CCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 468999999 999999999999999999 9999999977 578999999999999999999999999999999999
Q ss_pred ecccCcc
Q 012831 411 PYREKSK 417 (455)
Q Consensus 411 ~a~~k~k 417 (455)
++.++..
T Consensus 133 ~a~~~~~ 139 (156)
T 3n9u_C 133 PATRQNL 139 (156)
T ss_dssp ECCHHHH
T ss_pred EcCCCcc
Confidence 9987653
No 96
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=9.4e-16 Score=134.53 Aligned_cols=84 Identities=25% Similarity=0.430 Sum_probs=77.4
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||++ |+.++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.+|+..|+|+.|.|.
T Consensus 39 ~~~~~~l~V~n-Lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNY-IPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEES-CSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34678999999 8999999999999999999999999987 368999999999999999999999999999999999
Q ss_pred ecccCccch
Q 012831 411 PYREKSKLV 419 (455)
Q Consensus 411 ~a~~k~k~~ 419 (455)
+++++.+..
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999876543
No 97
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.6e-15 Score=126.60 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=74.4
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||++ |+..+|+++|+++|++|| |.+|+|+.+ +++|||||+|.+.++|++|+ .+|++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGN-LPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEES-CCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeC-CCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 34678999999 899999999999999997 999999987 46899999999999999999 889999999999999
Q ss_pred ecccCccc
Q 012831 411 PYREKSKL 418 (455)
Q Consensus 411 ~a~~k~k~ 418 (455)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99987653
No 98
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4e-16 Score=130.51 Aligned_cols=83 Identities=28% Similarity=0.447 Sum_probs=76.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||++ |++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|+
T Consensus 13 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 13 ADEIGKLFVGG-LDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp SSSSSEECCBS-CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 34678999999 8999999999999999999999999987 4689999999999999999999 9999999999999
Q ss_pred ecccCccch
Q 012831 411 PYREKSKLV 419 (455)
Q Consensus 411 ~a~~k~k~~ 419 (455)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 999887644
No 99
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=5.6e-16 Score=131.47 Aligned_cols=81 Identities=21% Similarity=0.429 Sum_probs=75.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
.+..++|||+| |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|+..|+|+.|.|.
T Consensus 23 ~~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGS-LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEEC-CCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45678999999 8999999999999999999999999976 468999999999999999999999999999999999
Q ss_pred ecccCc
Q 012831 411 PYREKS 416 (455)
Q Consensus 411 ~a~~k~ 416 (455)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998875
No 100
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=129.74 Aligned_cols=80 Identities=28% Similarity=0.429 Sum_probs=74.9
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..++|||++ |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. +++.|+|+.|.|.++
T Consensus 26 ~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGG-LSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEEC-CTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 457999999 8999999999999999999999999986 4789999999999999999998 999999999999999
Q ss_pred ccCccc
Q 012831 413 REKSKL 418 (455)
Q Consensus 413 ~~k~k~ 418 (455)
.++.+.
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 988654
No 101
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=6.3e-16 Score=135.56 Aligned_cols=83 Identities=27% Similarity=0.281 Sum_probs=76.9
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
.....++|||+| |+..+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+|+..|+|+.|.|
T Consensus 42 ~~~~~~~l~V~n-Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFG-LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEET-CTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999 8999999999999999999999999976 57999999999999999999999999999999999
Q ss_pred EecccCcc
Q 012831 410 KPYREKSK 417 (455)
Q Consensus 410 k~a~~k~k 417 (455)
+++++++.
T Consensus 121 ~~a~~~~p 128 (129)
T 2kxn_B 121 DFSITKRP 128 (129)
T ss_dssp SCCSSSSC
T ss_pred EEecCCCC
Confidence 99988753
No 102
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=2e-15 Score=125.51 Aligned_cols=78 Identities=15% Similarity=0.380 Sum_probs=72.3
Q ss_pred CCCCcceEEEeCCCCC-CCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 334 IVTGSRQIYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~-~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..+..++|||+| |+. .+++++|+++|++||.|.+|+| +||||||+|.+.++|++|++.+|+..++|+.|.|.++
T Consensus 18 ~~~~~~~l~V~n-Lp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 18 GSHMKSRLFIGN-LPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp -CCTTCEEEEES-CCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCCEEEEeC-CCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 345788999999 898 9999999999999999999999 4899999999999999999999999999999999999
Q ss_pred ccCc
Q 012831 413 REKS 416 (455)
Q Consensus 413 ~~k~ 416 (455)
+++.
T Consensus 93 ~~~~ 96 (97)
T 2xnq_A 93 SSNA 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 103
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=128.03 Aligned_cols=81 Identities=11% Similarity=0.135 Sum_probs=74.2
Q ss_pred CCcceEEEeCCCCCCC------CHHHHHHHhhccCCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCe-E
Q 012831 336 TGSRQIYLTFPAESTF------TEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGA-R 406 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~------teedLr~~Fs~fG~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr-~ 406 (455)
...++|||+| |++.+ |+++|+++|++||+|.+|+|+.. ++||||||+|.+.++|++|++.+|++.|+|+ .
T Consensus 13 ~~~~~l~V~n-Lp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDN-VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEES-CCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeC-CCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3468999999 89998 78999999999999999999954 6899999999999999999999999999998 9
Q ss_pred EEEEecccCcc
Q 012831 407 VLVKPYREKSK 417 (455)
Q Consensus 407 v~Vk~a~~k~k 417 (455)
|.|.++.+..+
T Consensus 92 l~V~~a~~~~k 102 (105)
T 2nlw_A 92 FRVNLFTDFDK 102 (105)
T ss_dssp EEEECSCCCCC
T ss_pred EEEEEcchHhh
Confidence 99999987654
No 104
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=130.41 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=75.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCc-eeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPV-DDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I-~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||+| |++++|+++|+++|++||.| .+|+|+.| ++||||||+|.+.++|++||+. |++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITN-IPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEES-CCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeC-cCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34578999999 99999999999999999999 89999987 5899999999999999999998 9999999999999
Q ss_pred ecccCccc
Q 012831 411 PYREKSKL 418 (455)
Q Consensus 411 ~a~~k~k~ 418 (455)
++.++...
T Consensus 90 ~a~~~~~~ 97 (114)
T 2cpy_A 90 VVTLEDMR 97 (114)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99876543
No 105
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6e-16 Score=131.49 Aligned_cols=79 Identities=18% Similarity=0.392 Sum_probs=73.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..++|||+| |+..+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|+ .+|++.|+|+.|.|.++
T Consensus 24 ~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQ-LAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEES-CCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 457999999 8999999999999999999999999976 47899999999999999999 88999999999999999
Q ss_pred ccCcc
Q 012831 413 REKSK 417 (455)
Q Consensus 413 ~~k~k 417 (455)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87654
No 106
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=126.41 Aligned_cols=80 Identities=19% Similarity=0.328 Sum_probs=74.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
...++|||++ |+.++|+++|+++|++|| |.+|+|+.+ +++|||||+|.+.++|++|+ .+|++.|+|+.|.|+
T Consensus 13 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGN-LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEES-CCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCEEEEeC-CCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 4568999999 899999999999999999 999999976 35899999999999999999 889999999999999
Q ss_pred ecccCccc
Q 012831 411 PYREKSKL 418 (455)
Q Consensus 411 ~a~~k~k~ 418 (455)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987654
No 107
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.62 E-value=4.6e-16 Score=122.22 Aligned_cols=71 Identities=32% Similarity=0.457 Sum_probs=67.1
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
+|||+| ||.++|+++|+++|++||+|.+|+++.+ +++|||||+|.+.++|++|++ ++++.++|+.|.|++|
T Consensus 1 ~l~v~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGG-LSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEEC-CCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEec-CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 699999 8999999999999999999999999976 478999999999999999998 7999999999999986
No 108
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.4e-16 Score=129.54 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=75.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCC-ceeEEee-cc----CCCCeEEEEECCHHHHHHHHHhcC--CeeEcCeEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGP-VDDVRIP-CQ----QKRMFGFVTFASADTVKMILAKGN--PHFVCGARV 407 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~-I~~V~I~-~d----k~RGfaFVtF~~~e~A~~Al~~ln--~~~I~Gr~v 407 (455)
...++|||+| |+..+|+++|+++|++||. |.+|.|+ .+ ++||||||+|.+.++|++|++.++ ++.++|+.|
T Consensus 6 ~~~~~l~V~n-Lp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGG-IPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEEC-CCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeC-CCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 4578999999 8999999999999999999 9999998 44 579999999999999999999996 589999999
Q ss_pred EEEecccCccch
Q 012831 408 LVKPYREKSKLV 419 (455)
Q Consensus 408 ~Vk~a~~k~k~~ 419 (455)
.|.+++++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999887643
No 109
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=8e-16 Score=130.72 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=75.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
...++|||+| |+..+|+++|+++|++||.|.+|.|+.+ +++|||||+|.+.++|++|++.+|+..++|+.|.|.++.+
T Consensus 6 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRN-LPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEES-CCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4578999999 8999999999999999999999999987 5799999999999999999999999999999999999997
Q ss_pred Cc
Q 012831 415 KS 416 (455)
Q Consensus 415 k~ 416 (455)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 54
No 110
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-15 Score=122.49 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=73.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
...++|||+| |++++|+++|+++|++| .|.+|+|+.+ +++|||||+|.+.++|++|++ +|++.|+|+.|.|.++
T Consensus 8 ~~~~~l~v~n-Lp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRG-APFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEEC-CCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEEC-CCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4578999999 99999999999999999 9999999986 568999999999999999999 9999999999999999
Q ss_pred ccCcc
Q 012831 413 REKSK 417 (455)
Q Consensus 413 ~~k~k 417 (455)
.++.+
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 88754
No 111
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=7.8e-16 Score=130.59 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=72.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcC--CeeEcCeEEEEEec
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN--PHFVCGARVLVKPY 412 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln--~~~I~Gr~v~Vk~a 412 (455)
.+.+++|||+| |++.++|++|+++|++||+|.+|.|+. .||||||+|++.++|++|++.++ +..|+|++|.|.++
T Consensus 12 ~~p~~~l~V~n-Lp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRG-LCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEES-CCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 34678999999 899999999999999999999999988 58999999999999999999765 45699999999999
Q ss_pred ccCccc
Q 012831 413 REKSKL 418 (455)
Q Consensus 413 ~~k~k~ 418 (455)
+++...
T Consensus 89 ~~~~~~ 94 (104)
T 1wex_A 89 TSKRIT 94 (104)
T ss_dssp SSSSCC
T ss_pred cCcccc
Confidence 876643
No 112
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=125.47 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=74.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
.+..++|||++ |++.+++++|+++|++||.|.++.++.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|+
T Consensus 12 ~~~~~~l~v~n-Lp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQN-MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEES-CCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44678999999 8999999999999999999998888765 468999999999999999999999999999999999
Q ss_pred ecccCc
Q 012831 411 PYREKS 416 (455)
Q Consensus 411 ~a~~k~ 416 (455)
++..+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 988654
No 113
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=123.13 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=73.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
....++|||++ |+..+|+++|+++|++||+|.+|+|+ ++||||+|.+.++|++|++.+|++.++|+.|.|.++++
T Consensus 6 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGN-VSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEES-CCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 34678999999 89999999999999999999999997 46999999999999999999999999999999999998
Q ss_pred Cccc
Q 012831 415 KSKL 418 (455)
Q Consensus 415 k~k~ 418 (455)
+.+.
T Consensus 81 ~~~~ 84 (90)
T 2dnp_A 81 GQKK 84 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 114
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=1e-15 Score=132.12 Aligned_cols=85 Identities=13% Similarity=0.211 Sum_probs=77.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||+| |+..+|+++|+++|++||.|.+|.|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|+
T Consensus 19 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTG-VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEES-CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34578999999 8999999999999999999999999976 469999999999999999999999999999999999
Q ss_pred ecccCccchh
Q 012831 411 PYREKSKLVD 420 (455)
Q Consensus 411 ~a~~k~k~~~ 420 (455)
++.++.....
T Consensus 98 ~a~~~~~~~~ 107 (126)
T 3ex7_B 98 WCFVRGPPKG 107 (126)
T ss_dssp ESEESSSCCC
T ss_pred EecCCCCCCC
Confidence 9988765443
No 115
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.7e-15 Score=121.84 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=73.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
....++|||++ |+..+|+++|+++|++||+|.+|+|+ ++||||+|.+.++|++|++.+|++.|+|+.|.|+++++
T Consensus 7 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGN-ISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEES-CCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 34678999999 89999999999999999999999997 46999999999999999999999999999999999998
Q ss_pred Cccc
Q 012831 415 KSKL 418 (455)
Q Consensus 415 k~k~ 418 (455)
+.+.
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 116
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=126.75 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=73.4
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCcee--------EEeecc----CCCCeEEEEECCHHHHHHHHHhcCCee
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD--------VRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHF 401 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~--------V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~ 401 (455)
..+..++|||+| |+.++|+++|+++|++||.|.+ |+|+.+ ++||||||+|.+.++|++|++.+|+..
T Consensus 9 ~~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQG-LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEEC-CCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeC-CCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 345678999999 8999999999999999999999 999986 468999999999999999999999999
Q ss_pred EcCeEEEEEecc
Q 012831 402 VCGARVLVKPYR 413 (455)
Q Consensus 402 I~Gr~v~Vk~a~ 413 (455)
++|+.|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 117
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.2e-15 Score=130.20 Aligned_cols=78 Identities=21% Similarity=0.367 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
.+..++|||+| |+.++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+|++.|+|+.|+|+
T Consensus 37 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYH-LPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEEC-SCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34678999999 8999999999999999999999999976 569999999999999999999999999999999999
Q ss_pred ecc
Q 012831 411 PYR 413 (455)
Q Consensus 411 ~a~ 413 (455)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 118
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=3.7e-15 Score=128.59 Aligned_cols=83 Identities=8% Similarity=0.107 Sum_probs=76.6
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
.....++|||+| |+..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 31 ~~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSN-LDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEES-CCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345678999999 8999999999999999999999999987 478999999999999999999999999999999999
Q ss_pred ecccCcc
Q 012831 411 PYREKSK 417 (455)
Q Consensus 411 ~a~~k~k 417 (455)
+|.++..
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987654
No 119
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-15 Score=125.30 Aligned_cols=81 Identities=25% Similarity=0.358 Sum_probs=74.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||+| |++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. ++.|+|+.|.|+
T Consensus 12 ~~~~~~l~v~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCEEEES-CCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred cCCCCEEEEEc-CCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 34678999999 8999999999999999999999999986 4689999999999999999995 789999999999
Q ss_pred ecccCccc
Q 012831 411 PYREKSKL 418 (455)
Q Consensus 411 ~a~~k~k~ 418 (455)
++.++.+.
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99988664
No 120
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=5.7e-16 Score=128.69 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=73.7
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCccc
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 418 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~k~ 418 (455)
++|||++ |+..+|+++|+++|++||+|.+|+|+.+ ++|||||+|.+.++|++|++.++++.++|+.|.|.+++++.+.
T Consensus 1 ~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGN-LGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEEC-CCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 4899999 8999999999999999999999999987 7999999999999999999999999999999999999987643
No 121
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=1.9e-15 Score=126.55 Aligned_cols=78 Identities=10% Similarity=0.147 Sum_probs=73.4
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
....++|||+| |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|++
T Consensus 26 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSN-LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEES-CCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35678999999 8999999999999999999999999977 5789999999999999999999999999999999998
Q ss_pred cc
Q 012831 412 YR 413 (455)
Q Consensus 412 a~ 413 (455)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 122
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=5.3e-16 Score=129.29 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=71.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccC-----CCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ-----KRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk-----~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
....++|||+| |+.++++++|+++|++|| |.+|+|+.++ ++|||||+|.+.++|++|+ .++++.|+|+.|.|
T Consensus 16 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGN-LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESC-CSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeC-CCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 34678999999 899999999999999999 9999999763 6999999999999999999 78999999999999
Q ss_pred EecccCc
Q 012831 410 KPYREKS 416 (455)
Q Consensus 410 k~a~~k~ 416 (455)
++++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998875
No 123
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.5e-16 Score=128.45 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=76.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhc-cCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCee-EcCeEEEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNT-YGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHF-VCGARVLVK 410 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~-fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~-I~Gr~v~Vk 410 (455)
...++|||+| |+.++|+++|+++|++ ||.|.+|+|+.+ +++|||||+|.+.++|++|++.++++. |+|+.|.|.
T Consensus 7 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGD-LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEEC-CCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 4578999999 8999999999999999 999999999986 578999999999999999999999999 999999999
Q ss_pred ecccCccc
Q 012831 411 PYREKSKL 418 (455)
Q Consensus 411 ~a~~k~k~ 418 (455)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99877654
No 124
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=3.9e-16 Score=136.45 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=74.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCcee--EEeecc----CCCCeEEEEECCHHHHHHHHHhcCCe----eEcCe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD--VRIPCQ----QKRMFGFVTFASADTVKMILAKGNPH----FVCGA 405 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~--V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~----~I~Gr 405 (455)
...++|||+| |++++||++|+++|++||.|.. |+|+.| ++||||||+|.+. +|++|+..+|++ .|+|+
T Consensus 21 ~~~~~lfV~n-L~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 21 NANDTIILRN-LNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCCCEEEECS-CCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 4578999999 9999999999999999999976 999987 4899999999999 999999999999 99999
Q ss_pred EEEEEecccCccc
Q 012831 406 RVLVKPYREKSKL 418 (455)
Q Consensus 406 ~v~Vk~a~~k~k~ 418 (455)
.|.|++++++.+.
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999987554
No 125
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5e-15 Score=122.36 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=72.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
...++|||++ + ++|+++|+++|++||+|.+|.|.. +||||||+|.+.++|++|++.++++.|+|+.|.|.++.++
T Consensus 13 ~~~~~l~V~n-~--~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYG-E--DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEEC-S--SCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcC-C--CCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 4578999999 5 899999999999999999999965 8999999999999999999999999999999999999987
Q ss_pred ccc
Q 012831 416 SKL 418 (455)
Q Consensus 416 ~k~ 418 (455)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 126
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2.1e-15 Score=128.03 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=72.6
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
...++|||+| |+.++|+++|+++|++||.|.+|+|+ ||||||+|.+.++|++|++.+|+..++|+.|.|.+++++
T Consensus 29 ~~~~~l~V~n-Lp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRP-FPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECS-SCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 4678999999 89999999999999999999999997 799999999999999999999999999999999999987
Q ss_pred ccc
Q 012831 416 SKL 418 (455)
Q Consensus 416 ~k~ 418 (455)
.+.
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 653
No 127
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=6.8e-16 Score=121.46 Aligned_cols=72 Identities=24% Similarity=0.382 Sum_probs=68.3
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
++|||+| ||.++++++|+++|++||+|.+|+++.+ +++|||||+|.+.++|++|++.++ +.++|+.|.|++|
T Consensus 1 ~~l~v~n-lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGG-LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEES-CCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999 8999999999999999999999999986 468999999999999999999988 9999999999987
No 128
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=123.66 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCC-ceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCC-eeEcCeEEEEEec
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGP-VDDVRIPCQQKRMFGFVTFASADTVKMILAKGNP-HFVCGARVLVKPY 412 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~-I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~-~~I~Gr~v~Vk~a 412 (455)
....++|||++ |+.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.+|+ +.|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGN-LSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEEC-CCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeC-CCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 34678999999 8999999999999999999 6666663 589999999999999999999999 9999999999999
Q ss_pred ccCccc
Q 012831 413 REKSKL 418 (455)
Q Consensus 413 ~~k~k~ 418 (455)
+++...
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 987654
No 129
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.9e-15 Score=121.82 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=73.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhcc--CCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTY--GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~f--G~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
....++|||+| |+..+|+++|+++|++| |.|.+|+++ ||||||+|.+.++|++|++.+|++.|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRN-LMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEES-CCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred cCCcCEEEEeC-CCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34678999999 89999999999999999 999999874 789999999999999999999999999999999999
Q ss_pred ccCccc
Q 012831 413 REKSKL 418 (455)
Q Consensus 413 ~~k~k~ 418 (455)
+++.+.
T Consensus 87 ~~~~~~ 92 (99)
T 2cpd_A 87 KPVDKD 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 130
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=2.7e-15 Score=134.47 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=76.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||++ |+..+|+++|+++|++||+|..|+|+.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 36 ~~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGN-LSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34678999999 8999999999999999999999999986 468999999999999999999999999999999999
Q ss_pred ecccCccc
Q 012831 411 PYREKSKL 418 (455)
Q Consensus 411 ~a~~k~k~ 418 (455)
+++++...
T Consensus 115 ~a~~~~~~ 122 (156)
T 1h2v_Z 115 WDAGFKEG 122 (156)
T ss_dssp EESCCCTT
T ss_pred ECCCCCCc
Confidence 99876543
No 131
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=4.7e-15 Score=129.46 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=72.2
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
.....++|||+| |+..+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+|++.|+|+.|+|
T Consensus 59 ~~~~~~~l~v~n-lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 59 SATTKRVLYVGG-LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SCSSCCEEEEEC-CCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCcEEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999 8999999999999999999999999986 57999999999999999999999999999999999
Q ss_pred Eec
Q 012831 410 KPY 412 (455)
Q Consensus 410 k~a 412 (455)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 132
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=3.5e-16 Score=127.12 Aligned_cols=78 Identities=26% Similarity=0.376 Sum_probs=69.2
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
++|||+| |+.++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.+ |++|+..+|++.++|+.|.|++|.+
T Consensus 2 ~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGN-LVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEE-ECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECC-CCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 6899999 8999999999999999999999999976 46999999999999 9999999999999999999999988
Q ss_pred Cccc
Q 012831 415 KSKL 418 (455)
Q Consensus 415 k~k~ 418 (455)
+...
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7543
No 133
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=124.23 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=72.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
....++|||++ |+..+|+++|+++|++||.| +++.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSN-LSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEES-CCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 34678999999 89999999999999999987 45544 6899999999999999999999999999999999999
Q ss_pred cccCccc
Q 012831 412 YREKSKL 418 (455)
Q Consensus 412 a~~k~k~ 418 (455)
++++.+.
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9987653
No 134
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=1.1e-15 Score=125.15 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=70.6
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
+..++|||++ ||+.+|+++|+++|++||.|..+.++.+ +++|||||+|.+.++|++|++.+|++.|+|+.|+|.+
T Consensus 13 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQN-MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEEC-CCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3568999999 8999999999999999999998888875 5789999999999999999999999999999999998
Q ss_pred ccc
Q 012831 412 YRE 414 (455)
Q Consensus 412 a~~ 414 (455)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 135
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.7e-15 Score=125.08 Aligned_cols=79 Identities=14% Similarity=0.378 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCC-CCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 336 TGSRQIYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 336 ~~~rkIfVg~~l~~-~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
+..++|||++ |++ .+|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.+++..+.|+.|.|.++++
T Consensus 8 ~~~~~l~V~n-lp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 8 PPKSRLFIGN-LPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp -CCEEEEEES-STTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCEEEEeC-CCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 4678999999 898 99999999999999999999994 79999999999999999999999999999999999988
Q ss_pred Cccch
Q 012831 415 KSKLV 419 (455)
Q Consensus 415 k~k~~ 419 (455)
+.+..
T Consensus 83 ~~~~~ 87 (96)
T 2kvi_A 83 NARPQ 87 (96)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 76543
No 136
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=130.54 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=73.2
Q ss_pred CCCcceEEEeCCCCCC-CCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcC--CeeEcCeEEEEEe
Q 012831 335 VTGSRQIYLTFPAEST-FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN--PHFVCGARVLVKP 411 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~-~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln--~~~I~Gr~v~Vk~ 411 (455)
...+++|||+| |+++ +||++|+++|++||+|.+|+|+. .||||||+|++.++|++|++.++ +..|+|++|.|.+
T Consensus 22 ~~p~~~l~V~N-Lp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSN-LPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEES-CCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeC-CCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34678999999 8998 99999999999999999999987 78999999999999999999764 5679999999999
Q ss_pred cccCccc
Q 012831 412 YREKSKL 418 (455)
Q Consensus 412 a~~k~k~ 418 (455)
++.+...
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9877654
No 137
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-15 Score=126.31 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=72.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCcee-EEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD-VRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~-V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||++ |++++|+++|+++|++||.|.+ |+|+.+ +++|||||+|.+.++|++||+. +++.|+|+.|.|.+
T Consensus 13 ~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRG-LPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEES-CCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 4578999999 9999999999999999999998 888876 6899999999999999999998 99999999999998
Q ss_pred cccCc
Q 012831 412 YREKS 416 (455)
Q Consensus 412 a~~k~ 416 (455)
+.++.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 138
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=2.4e-15 Score=129.52 Aligned_cols=79 Identities=18% Similarity=0.142 Sum_probs=73.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCC---ceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGP---VDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~---I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
...++|||++ |++++|+++|+++|++||. |.+|+|+.+ ++||||||+|.+.++|++||+ ++++.|+|+.|+|
T Consensus 15 ~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRG-LPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEES-CCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 3568999999 9999999999999999999 899999987 578999999999999999999 7999999999999
Q ss_pred EecccCc
Q 012831 410 KPYREKS 416 (455)
Q Consensus 410 k~a~~k~ 416 (455)
.++.++.
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987654
No 139
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-15 Score=126.76 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=74.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCc----eeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPV----DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I----~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||+| |+..+|+++|+++|++||.| ..+++...+++|||||+|.+.++|++|++.++++.|+|+.|.|.+
T Consensus 23 ~~~~~l~V~n-Lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKN-LSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEEC-CCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4678999999 89999999999999999999 566666667899999999999999999999999999999999999
Q ss_pred cccCccc
Q 012831 412 YREKSKL 418 (455)
Q Consensus 412 a~~k~k~ 418 (455)
++++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9987654
No 140
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=2.2e-15 Score=129.68 Aligned_cols=78 Identities=19% Similarity=0.424 Sum_probs=72.7
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
.++|||++ |+..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|+ .+|++.|+|+.|.|.+++
T Consensus 36 ~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGN-VDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEE-ECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 57999999 8999999999999999999999999976 57999999999999999999 789999999999999998
Q ss_pred cCcc
Q 012831 414 EKSK 417 (455)
Q Consensus 414 ~k~k 417 (455)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7554
No 141
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=128.45 Aligned_cols=76 Identities=9% Similarity=0.064 Sum_probs=71.9
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
..++|||+| |+..+|+++|+++|++||.|.+|.|+. .||||||+|.+.++|++|++.||+..++|+.|.|.|+..+
T Consensus 9 ~~~~l~V~n-Lp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKN-LPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEES-CCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 467999999 899999999999999999999999987 7899999999999999999999999999999999999764
No 142
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.58 E-value=1.6e-15 Score=133.80 Aligned_cols=83 Identities=22% Similarity=0.281 Sum_probs=76.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||+| |+..+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+|++.|+|+.|.|++
T Consensus 45 ~~~~~l~V~n-Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDN-LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEEC-CCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3567999999 8999999999999999999999999976 5799999999999999999999999999999999999
Q ss_pred cccCccch
Q 012831 412 YREKSKLV 419 (455)
Q Consensus 412 a~~k~k~~ 419 (455)
++++....
T Consensus 124 a~~~~~~~ 131 (135)
T 2lea_A 124 ARYGRPPD 131 (135)
T ss_dssp CCCCCCCT
T ss_pred CCCCCCCc
Confidence 99876544
No 143
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.4e-16 Score=124.24 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=70.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
+..++|||++ |+..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+|++.++|+.++|.+
T Consensus 3 ~~~~~l~v~n-lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRG-LQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEES-CCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4578999999 8999999999999999999999999986 4699999999999999999999999999999888766
Q ss_pred cc
Q 012831 412 YR 413 (455)
Q Consensus 412 a~ 413 (455)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 144
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=126.97 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=72.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||+| |+.++|+++|+++|++||.|.. .++.+ ++||||||+|.+.++|++|++ +|++.|+|+.|.|.+
T Consensus 15 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGN-LNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEEC-CCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3578999999 8999999999999999999998 55554 689999999999999999999 899999999999999
Q ss_pred cccCccc
Q 012831 412 YREKSKL 418 (455)
Q Consensus 412 a~~k~k~ 418 (455)
++++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9987654
No 145
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=2.1e-15 Score=134.07 Aligned_cols=79 Identities=18% Similarity=0.134 Sum_probs=73.3
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCC---ceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGP---VDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~---I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
...++|||+| |++++|+++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++ +|++.|+|+.|+|
T Consensus 42 ~~~~~lfVgn-Lp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRG-LPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEES-CCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 4578999999 9999999999999999999 899999987 578999999999999999999 8999999999999
Q ss_pred EecccCc
Q 012831 410 KPYREKS 416 (455)
Q Consensus 410 k~a~~k~ 416 (455)
.++.++.
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9987554
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=3.6e-15 Score=122.54 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=72.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
...++|||+| |+..+|+++|+++|++||.|..+ ....+++|||||+|.+.++|++|++.++++.|+|+.|.|.++.++
T Consensus 14 ~~~~~l~V~n-L~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKN-LSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEES-CCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 4578999999 89999999999999999999888 333368999999999999999999999999999999999999887
Q ss_pred cc
Q 012831 416 SK 417 (455)
Q Consensus 416 ~k 417 (455)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 147
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=121.05 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=65.6
Q ss_pred cceEEEeCCCCCCC------CHHHHHHHhhccCCceeEEeecc--CCCCeEEEEECCHHHHHHHHHhcCCeeEcCe-EEE
Q 012831 338 SRQIYLTFPAESTF------TEDDVSNYFNTYGPVDDVRIPCQ--QKRMFGFVTFASADTVKMILAKGNPHFVCGA-RVL 408 (455)
Q Consensus 338 ~rkIfVg~~l~~~~------teedLr~~Fs~fG~I~~V~I~~d--k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr-~v~ 408 (455)
+++|||+| ||..+ |+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+|+..++|+ .|+
T Consensus 1 ~~~l~V~n-Lp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDN-VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEES-CCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeC-CCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 36899999 89998 77999999999999999999854 6899999999999999999999999999999 877
Q ss_pred E
Q 012831 409 V 409 (455)
Q Consensus 409 V 409 (455)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 148
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=128.28 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=73.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCC---ceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGP---VDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~---I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
...++|||+| |++++|+++|+++|++||. |.+|+|+.+ ++||||||+|.+.++|++||+ ++++.|+|+.|+|
T Consensus 9 ~~~~~l~V~n-Lp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQG-LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEEC-CCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeC-CCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 4578999999 9999999999999999998 999999987 589999999999999999999 7999999999999
Q ss_pred EecccCc
Q 012831 410 KPYREKS 416 (455)
Q Consensus 410 k~a~~k~ 416 (455)
.++.++.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9998754
No 149
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=5e-15 Score=125.14 Aligned_cols=77 Identities=14% Similarity=0.338 Sum_probs=71.4
Q ss_pred CCcceEEEeCCCCCC-CCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 336 TGSRQIYLTFPAEST-FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~-~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
...++|||++ |++. +|+++|+++|++||+|.+|.| ++|||||+|.+.++|++|++.++++.|+|+.|.|.++++
T Consensus 25 ~~~~~l~V~n-l~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 25 SINSRVFIGN-LNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TCSSEEEECS-CCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCcEEEEeC-CCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3468999999 8999 999999999999999999999 589999999999999999999999999999999999986
Q ss_pred Ccc
Q 012831 415 KSK 417 (455)
Q Consensus 415 k~k 417 (455)
++.
T Consensus 100 ~~~ 102 (110)
T 1wf1_A 100 PKP 102 (110)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 150
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=4.8e-15 Score=134.45 Aligned_cols=85 Identities=13% Similarity=0.193 Sum_probs=74.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||+| |+..+|+++|+++|++||+|..|.|+.+ +++|||||+|.+.++|++||+.+|++.|+|+.|.|.+
T Consensus 70 ~~~~~l~V~n-Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTS-IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567999999 8999999999999999999999999976 3689999999999999999999999999999999999
Q ss_pred cccCccchhH
Q 012831 412 YREKSKLVDR 421 (455)
Q Consensus 412 a~~k~k~~~~ 421 (455)
+.++.....+
T Consensus 149 a~~~~~~~~~ 158 (165)
T 1rk8_A 149 CFVKGPKRVK 158 (165)
T ss_dssp SEECC-----
T ss_pred ecCCCCCCCC
Confidence 9987765433
No 151
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.9e-15 Score=121.73 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=74.3
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeE-EeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV-RIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V-~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
...++|||+| |++.+|+++|+++|++||.|.+| .|+.++..|.|||+|.+.++|++|++.+|++.|+|+.|.|+++.+
T Consensus 13 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRN-IPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEE-ECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEc-CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999 89999999999999999999999 488887677799999999999999999999999999999999998
Q ss_pred Cc
Q 012831 415 KS 416 (455)
Q Consensus 415 k~ 416 (455)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 73
No 152
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.3e-15 Score=126.08 Aligned_cols=76 Identities=24% Similarity=0.265 Sum_probs=70.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
...+|||+| |++++|+++|+++|++| .|.+|+|+.| ++||||||+|.+.++|++|| .+|++.|+||.|.|..+.
T Consensus 15 ~~~~v~V~n-Lp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHG-MPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEEC-CCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 356999999 99999999999999999 8999999987 58999999999999999999 569999999999999887
Q ss_pred cC
Q 012831 414 EK 415 (455)
Q Consensus 414 ~k 415 (455)
++
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 153
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=6.7e-15 Score=119.63 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=71.2
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~ 416 (455)
..++|||+| ||+.+++++|+++|++| .|.+|+|. ++||||||+|.+.++|++|++.+|+..++|++|.|.++..+.
T Consensus 4 ~~~~l~V~n-Lp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKN-LPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEES-CCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 467999999 89999999999999999 99999996 589999999999999999999999999999999999987654
No 154
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-15 Score=131.33 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||+| |++++|+++|+++|++||.|.++.++.+ +++|||||+|.+.++|++||+ +|++.|+|+.|.|.+
T Consensus 23 ~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 23 EAGFCVYLKG-LPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCEEEEEC-CCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4568999999 9999999999999999999998555543 579999999999999999999 899999999999999
Q ss_pred cccCcc
Q 012831 412 YREKSK 417 (455)
Q Consensus 412 a~~k~k 417 (455)
+.++..
T Consensus 101 a~~~~~ 106 (124)
T 1wel_A 101 ITKKGM 106 (124)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 988663
No 155
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.57 E-value=1.3e-15 Score=119.37 Aligned_cols=71 Identities=27% Similarity=0.510 Sum_probs=67.0
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
||||++ ||..+|+++|+++|++||+|.+|.++.+ +++|||||+|.+.++|++|++. +++.++|+.|.|++|
T Consensus 1 ~l~v~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGG-LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESC-CCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999 8999999999999999999999999976 5799999999999999999997 899999999999875
No 156
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.4e-15 Score=121.08 Aligned_cols=78 Identities=29% Similarity=0.488 Sum_probs=69.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~ 416 (455)
..++|||++ |+.++|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|+.. .+.++|++|.|.++.++.
T Consensus 4 ~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGR-CTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEES-CCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeC-CCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 468999999 8999999999999999999999999975 799999999999999876443 567799999999999876
Q ss_pred cc
Q 012831 417 KL 418 (455)
Q Consensus 417 k~ 418 (455)
..
T Consensus 80 ~~ 81 (88)
T 1wf0_A 80 NS 81 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 157
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.7e-15 Score=124.80 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=73.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeE--------cC
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFV--------CG 404 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I--------~G 404 (455)
...++|||++ |+..+|+++|+++|++||.|.+|+|+.+ ++||||||+|.+.++|++|++.+|+..| .+
T Consensus 23 ~~~~~l~V~n-lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISN-LPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEES-CCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 4568999999 8999999999999999999999999987 4689999999999999999999999999 67
Q ss_pred eEEEEEecccCc
Q 012831 405 ARVLVKPYREKS 416 (455)
Q Consensus 405 r~v~Vk~a~~k~ 416 (455)
+.|.|+++.|+.
T Consensus 102 ~~l~v~~a~p~~ 113 (114)
T 1x5o_A 102 EPLLCKFSGPSS 113 (114)
T ss_dssp SCBEEEECCCSC
T ss_pred CceeEEccCCCC
Confidence 889999998764
No 158
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=7.4e-15 Score=129.73 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=72.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeE--------Eeec-cCCCCeEEEEECCHHHHHHHHHhcCCeeEcCe
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDV--------RIPC-QQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V--------~I~~-dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr 405 (455)
...+++|||+| |++.+|+++|+++|++||.|..| ++.. .+++|||||+|.+.++|++|++.+|+..|+|+
T Consensus 42 ~~~~~~l~V~n-Lp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKN-LAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEE-ECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34578999999 89999999999999999999874 3333 37899999999999999999999999999999
Q ss_pred EEEEEecccCccchh
Q 012831 406 RVLVKPYREKSKLVD 420 (455)
Q Consensus 406 ~v~Vk~a~~k~k~~~ 420 (455)
.|.|.+++++....+
T Consensus 121 ~l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 121 PMVVQFARSARPKQD 135 (143)
T ss_dssp ECEEEECCCSCC---
T ss_pred EEEEEECCCCCCccC
Confidence 999999987655443
No 159
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.56 E-value=2.4e-15 Score=125.14 Aligned_cols=80 Identities=21% Similarity=0.424 Sum_probs=72.5
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
..++|||++ |+..+|+++|+++|++||.|.+|+|+.+ ++||||||+|.+.++|++|++ +++.++|+.|.|.++.
T Consensus 8 ~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGG-IDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEC-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 468999999 8999999999999999999999999987 478999999999999999998 8999999999999999
Q ss_pred cCccch
Q 012831 414 EKSKLV 419 (455)
Q Consensus 414 ~k~k~~ 419 (455)
++....
T Consensus 85 ~~~~~~ 90 (102)
T 2xs2_A 85 RKQNLS 90 (102)
T ss_dssp ECC---
T ss_pred cCcchh
Confidence 876544
No 160
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.8e-15 Score=125.32 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=71.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
...++|||+| |++++||++|+++|++||. .+|+|+.+ ++||||||+|.+.++|++||+ +|++.|+|+.|+|.++
T Consensus 13 ~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRG-LPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEES-CCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4568999999 9999999999999999995 59999987 578999999999999999995 5999999999999998
Q ss_pred ccCcc
Q 012831 413 REKSK 417 (455)
Q Consensus 413 ~~k~k 417 (455)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 1wez_A 90 STAGT 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=5.5e-15 Score=135.54 Aligned_cols=79 Identities=10% Similarity=0.081 Sum_probs=73.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcC--eEEEEEeccc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG--ARVLVKPYRE 414 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~G--r~v~Vk~a~~ 414 (455)
...+|||+| |++.+|+++|+++|++||+|++|+|..++++|||||+|.+.++|++|++.||+..|.| +.|+|.++++
T Consensus 45 ~vl~l~VgN-L~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 45 PVLRIIVEN-LFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CEEEEEECS-CCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred ceEEEEEeC-cCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 346899999 8999999999999999999999999876678999999999999999999999999966 9999999998
Q ss_pred Cc
Q 012831 415 KS 416 (455)
Q Consensus 415 k~ 416 (455)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 75
No 162
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.8e-15 Score=126.92 Aligned_cols=78 Identities=10% Similarity=0.157 Sum_probs=71.6
Q ss_pred CCcceEEE--eCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeE-----cCeEEE
Q 012831 336 TGSRQIYL--TFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFV-----CGARVL 408 (455)
Q Consensus 336 ~~~rkIfV--g~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I-----~Gr~v~ 408 (455)
..+++||| |+ |++.+||++|+++|++||+|++|.|+. .||||||+|.+.++|++|++.||++.+ .|+.|.
T Consensus 23 ~pt~~L~V~Ng~-L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGG-LGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SCCSEEEEETCT-GGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCEEEEECCC-CCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 45789999 99 899999999999999999999999987 589999999999999999999999998 789999
Q ss_pred EEecccCc
Q 012831 409 VKPYREKS 416 (455)
Q Consensus 409 Vk~a~~k~ 416 (455)
|.+++...
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99887544
No 163
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=3.5e-15 Score=143.20 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=73.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccC--CceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYG--PVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG--~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
..++|||+| |++.+|+++|+++|++|| +|++|+|+.| ++||||||+|.+.++|++||+.||++.|+|+.|+|+
T Consensus 67 ~~~~lfVgn-L~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGN-LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEES-CCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeC-CCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 467999999 999999999999999999 9999999987 579999999999999999999999999999999999
Q ss_pred ecccCc
Q 012831 411 PYREKS 416 (455)
Q Consensus 411 ~a~~k~ 416 (455)
+++++.
T Consensus 146 ~a~~~~ 151 (229)
T 3q2s_C 146 PVNKQF 151 (229)
T ss_dssp ECCHHH
T ss_pred ECCCCc
Confidence 998754
No 164
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=118.62 Aligned_cols=79 Identities=23% Similarity=0.434 Sum_probs=68.7
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
...++|||++ |++++|+++|+++|++||.|.+|.+.....+ ||||+|.+.++|++|++ +|++.|+|+.|.|+++.++
T Consensus 6 ~~~~~l~V~n-l~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSG-FPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEEC-CCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 3568999999 8999999999999999999999822222233 99999999999999999 9999999999999998876
Q ss_pred cc
Q 012831 416 SK 417 (455)
Q Consensus 416 ~k 417 (455)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 165
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=119.72 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=71.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||++ |+..+|+++|+++|++|+ .|+++.+ +++|||||+|.+.++|++|++.+|++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~n-Lp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKG-LSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEEC-CCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeC-CCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999 899999999999999885 5566654 568999999999999999999999999999999999
Q ss_pred ecccCccc
Q 012831 411 PYREKSKL 418 (455)
Q Consensus 411 ~a~~k~k~ 418 (455)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99987653
No 166
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=2.1e-14 Score=124.62 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=71.8
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
...++|||++ + ++|+++|+++|++||+|.+|.|+. +||||||+|.+.++|++|++.+|++.|+|+.|.|.+++++
T Consensus 37 ~~~~~lfVgn-l--~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYG-E--DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEEC-S--SCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcC-C--CCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 4678999999 5 699999999999999999999975 8999999999999999999999999999999999999987
Q ss_pred ccc
Q 012831 416 SKL 418 (455)
Q Consensus 416 ~k~ 418 (455)
...
T Consensus 112 ~~~ 114 (121)
T 2bz2_A 112 PML 114 (121)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 167
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=127.37 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=71.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCc----eeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPV----DDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I----~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
...+|||+| |++++|+++|+++|++||+| .+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|+|
T Consensus 22 ~~~~v~V~n-Lp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRG-LPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECS-CCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 357999999 99999999999999999986 69999976 6799999999999999999998 999999999999
Q ss_pred EecccCc
Q 012831 410 KPYREKS 416 (455)
Q Consensus 410 k~a~~k~ 416 (455)
..+.++.
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987654
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=3.3e-14 Score=114.30 Aligned_cols=72 Identities=24% Similarity=0.414 Sum_probs=67.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhcc----C-------CceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTY----G-------PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~f----G-------~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
...++|||+| |++++|+++|+++|++| | +|.+++++. .||||||+|.+.++|++|+ .+|++.++|
T Consensus 4 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 4 GSARRLYVGN-IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGGEEEEES-CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 3578999999 89999999999999999 8 999999987 5899999999999999999 899999999
Q ss_pred eEEEEEe
Q 012831 405 ARVLVKP 411 (455)
Q Consensus 405 r~v~Vk~ 411 (455)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 169
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=9.7e-16 Score=130.73 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=75.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCcee--------EEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEc
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDD--------VRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVC 403 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~--------V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~ 403 (455)
...++|||+| |+..+++++|+++|++||.|.+ |+|+.+ +++|||||+|.+.++|++|++.+|++.|+
T Consensus 5 ~~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQG-LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 3578999999 8999999999999999999999 889876 57999999999999999999999999999
Q ss_pred CeEEEEEecccCccc
Q 012831 404 GARVLVKPYREKSKL 418 (455)
Q Consensus 404 Gr~v~Vk~a~~k~k~ 418 (455)
|+.|.|.+++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999987654
No 170
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.51 E-value=1.2e-14 Score=124.46 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=67.5
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeE-----EEEEe
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGAR-----VLVKP 411 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~-----v~Vk~ 411 (455)
...+|||+| |++++|+++|+++|++||+|.+|.|+.+ |||||+|.+.++|++||+.||++.|+|+. |+|..
T Consensus 15 ~~~~l~V~n-Lp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 15 SENRVVVSG-LPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp --CCEEEEE-CCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCcEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 457999999 8999999999999999999999999885 99999999999999999999999999998 77877
Q ss_pred cccCcc
Q 012831 412 YREKSK 417 (455)
Q Consensus 412 a~~k~k 417 (455)
+.++..
T Consensus 91 ~~~~~~ 96 (115)
T 3beg_B 91 DGPRSP 96 (115)
T ss_dssp CC----
T ss_pred CCCCCC
Confidence 776543
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.51 E-value=4.4e-14 Score=133.01 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=73.3
Q ss_pred CCcceEEEeCCCC-CCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 336 TGSRQIYLTFPAE-STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 336 ~~~rkIfVg~~l~-~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
+.+++|||+| |+ +.+|+++|+++|++||.|.+|+|+.+ +||||||+|.+.++|++|++.||++.+.|+.|.|.+++.
T Consensus 2 ~~~~~l~V~n-L~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYG-LDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEEC-CCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeC-CCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 3578999999 88 89999999999999999999999986 489999999999999999999999999999999999875
Q ss_pred Cc
Q 012831 415 KS 416 (455)
Q Consensus 415 k~ 416 (455)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 172
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=3.7e-14 Score=133.12 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=74.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...+|||||| |++++||++|+++|++||+|.+|+|+.| +++|||||+|.+.++|++|++.+++..+.|+.++|.+
T Consensus 13 ~p~~tlfVgn-Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGD-LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeC-CCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3568999999 9999999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred cccCcc
Q 012831 412 YREKSK 417 (455)
Q Consensus 412 a~~k~k 417 (455)
+.....
T Consensus 92 ~~~~~~ 97 (213)
T 4f02_A 92 SQRDPS 97 (213)
T ss_dssp CCCCTH
T ss_pred cccccc
Confidence 876654
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.51 E-value=5e-14 Score=124.57 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=73.9
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
+++|||+| ||.++|+++|+++|++||+|.+|+++.+ +++|||||+|.+.++|++|++.+++..+.|+.|.|.++.
T Consensus 2 ~~~l~v~n-lp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNY-LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEES-CCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcC-CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 58999999 8999999999999999999999999986 467999999999999999999999999999999999998
Q ss_pred cCcc
Q 012831 414 EKSK 417 (455)
Q Consensus 414 ~k~k 417 (455)
++..
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 7654
No 174
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=4.3e-14 Score=125.55 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=74.5
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..++|||+| ||.++|+++|+++|++||+|.+|+++.+ +++|||||+|.+.++|++|++.+++..++|+.|.|.++
T Consensus 2 ~~~~l~v~n-lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNY-LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEEC-CCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeC-CCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 468999999 8999999999999999999999999976 37899999999999999999999999999999999999
Q ss_pred ccCcc
Q 012831 413 REKSK 417 (455)
Q Consensus 413 ~~k~k 417 (455)
.++..
T Consensus 81 ~~~~~ 85 (168)
T 1b7f_A 81 RPGGE 85 (168)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87654
No 175
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.50 E-value=5e-14 Score=130.04 Aligned_cols=82 Identities=9% Similarity=0.126 Sum_probs=76.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
....++|||+| |+..+++++|+++|++||+|++|.|+.+ +++|||||+|.+.++|++|++.+|+..|+|+.|.|.+
T Consensus 85 ~~~~~~l~V~n-Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSN-LDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEEC-CCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999 8999999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred cccCcc
Q 012831 412 YREKSK 417 (455)
Q Consensus 412 a~~k~k 417 (455)
+.+...
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 987644
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.50 E-value=8.4e-15 Score=130.68 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=72.3
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
...++|||+| |++++||++|+++|++|| |++|+|++| ++||||||+|.+.++|++|| .+|++.|+|+.|+|.++
T Consensus 44 ~~~~~lfV~n-Lp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRG-LPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCS-CCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3467999999 999999999999999999 779999987 58999999999999999999 67999999999999999
Q ss_pred ccCccc
Q 012831 413 REKSKL 418 (455)
Q Consensus 413 ~~k~k~ 418 (455)
.++...
T Consensus 121 ~~~~~~ 126 (139)
T 2hgn_A 121 STTGAS 126 (139)
T ss_dssp CCSCC-
T ss_pred CCCCCC
Confidence 887653
No 177
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.2e-14 Score=124.91 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=73.1
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
|+|||+| ||.++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..+.|+.|.|.++.++
T Consensus 1 R~l~V~n-lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGN-LDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEE-EETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECC-CCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999 8999999999999999999999999977 47899999999999999999999999999999999999776
Q ss_pred cc
Q 012831 416 SK 417 (455)
Q Consensus 416 ~k 417 (455)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 178
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=2e-14 Score=126.22 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=70.0
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCce--eEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVD--DVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~--~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
...++|||+| |++++||++|+++|++| .|. +|+|++| ++||||||+|.+.++|++|++. ++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgn-Lp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRG-LPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEEC-CCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 3567999999 99999999999999999 677 9999987 6899999999999999999997 7799999999999
Q ss_pred ecccC
Q 012831 411 PYREK 415 (455)
Q Consensus 411 ~a~~k 415 (455)
++.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 179
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=6.5e-14 Score=122.75 Aligned_cols=76 Identities=16% Similarity=0.051 Sum_probs=69.6
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCe-EEEEECCHHHHHHHHHhcCCeeEcC--eEEEEEecccC
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMF-GFVTFASADTVKMILAKGNPHFVCG--ARVLVKPYREK 415 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGf-aFVtF~~~e~A~~Al~~ln~~~I~G--r~v~Vk~a~~k 415 (455)
-.|||+| |++.+|+++|+++|++||+|.+|+|.. + +|| |||+|.+.++|++|++.||+..|.| +.|+|.+|+++
T Consensus 26 l~l~V~N-L~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQN-PLYPITVDVLYTVCNPVGKVQRIVIFK-R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEES-CCSCCCHHHHHHHHTTTSCEEEEEEEE-S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEcC-cCCCCCHHHHHHHHHhcCCEEEEEEEe-C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 4689999 899999999999999999999999976 3 597 9999999999999999999999988 69999999987
Q ss_pred cc
Q 012831 416 SK 417 (455)
Q Consensus 416 ~k 417 (455)
.-
T Consensus 103 ~l 104 (124)
T 2e5i_A 103 RL 104 (124)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 180
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=9.2e-14 Score=122.83 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=71.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCe-EEEEECCHHHHHHHHHhcCCeeEcC--eEEEEEecc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMF-GFVTFASADTVKMILAKGNPHFVCG--ARVLVKPYR 413 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGf-aFVtF~~~e~A~~Al~~ln~~~I~G--r~v~Vk~a~ 413 (455)
..-+|||+| |++.+|+++|+++|++||+|.+|+|+.+ .+|| |||+|.+.++|++|++.||+..|.| +.|+|.+++
T Consensus 27 ~VL~I~V~N-L~~~vte~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 27 PVLRIIVEN-LFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp SEEEEEEES-CCSCCCHHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred ceEEEEECC-CCCCCCHHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 345899999 8999999999999999999999988764 5788 9999999999999999999999998 999999999
Q ss_pred cCc
Q 012831 414 EKS 416 (455)
Q Consensus 414 ~k~ 416 (455)
++.
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 875
No 181
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=117.55 Aligned_cols=76 Identities=20% Similarity=0.374 Sum_probs=66.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc-------CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEE
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ-------QKRMFGFVTFASADTVKMILAKGNPHFVCGARVL 408 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d-------k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~ 408 (455)
...++|||++ |++++|+++|+++|++||+|. +.++.+ ++||||||+|.+.++|++|++.+ +.++|+.+.
T Consensus 6 ~~~~~lfVgn-Lp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGG-LPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYL 81 (114)
T ss_dssp SCCCCEEEEC-CCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEE
T ss_pred CCCCEEEEcC-CCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEE
Confidence 3578999999 999999999999999999999 888865 46899999999999999999997 568999888
Q ss_pred EEecccC
Q 012831 409 VKPYREK 415 (455)
Q Consensus 409 Vk~a~~k 415 (455)
+..+.+.
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 8766543
No 182
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.46 E-value=1.5e-13 Score=125.21 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=72.4
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
...++|||+| ||.++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. +++.++|+.|.|.+
T Consensus 11 ~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 11 EQLRKLFIGG-LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp GGGGEEEEES-CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 4578999999 8999999999999999999999999986 4689999999999999999988 89999999999999
Q ss_pred cccCcc
Q 012831 412 YREKSK 417 (455)
Q Consensus 412 a~~k~k 417 (455)
+.++..
T Consensus 89 ~~~~~~ 94 (196)
T 1l3k_A 89 AVSRED 94 (196)
T ss_dssp CCC---
T ss_pred ccCccc
Confidence 987654
No 183
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.46 E-value=2.2e-13 Score=142.39 Aligned_cols=82 Identities=17% Similarity=0.365 Sum_probs=75.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
....++|||+| |++.+|+++|+++|++||.|+.|.|+.+ +++|||||+|.+.++|++||+.||++.|+|+.|.|.
T Consensus 99 ~~~~~~lfV~n-L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVAR-VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999 9999999999999999999999999976 479999999999999999999999999999999999
Q ss_pred ecccCcc
Q 012831 411 PYREKSK 417 (455)
Q Consensus 411 ~a~~k~k 417 (455)
++.++..
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987654
No 184
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4.2e-13 Score=114.15 Aligned_cols=82 Identities=7% Similarity=0.176 Sum_probs=70.6
Q ss_pred CCcceEEEeCCCCCCC-----------CHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 336 TGSRQIYLTFPAESTF-----------TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~-----------teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
..+++|+|.| +-... ++++|+++|++||+|.+|.|+...++|||||+|.+.++|++|++.||++.++|
T Consensus 13 ~~s~~l~l~N-l~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKN-MFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEES-SCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEc-CCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4688999999 43222 26899999999999999977544689999999999999999999999999999
Q ss_pred eEEEEEecccCccc
Q 012831 405 ARVLVKPYREKSKL 418 (455)
Q Consensus 405 r~v~Vk~a~~k~k~ 418 (455)
+.|.|.++.++.+.
T Consensus 92 r~l~v~~a~~~~~~ 105 (112)
T 2dit_A 92 RQITAQAWDGTTDY 105 (112)
T ss_dssp EECEEEECCSCCCS
T ss_pred cEEEEEEeCCCCCc
Confidence 99999999887643
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=2e-13 Score=126.35 Aligned_cols=82 Identities=16% Similarity=0.345 Sum_probs=74.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..++|||+| |+.++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..|+|+.|.|.++
T Consensus 27 ~~~~l~V~n-Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGS-IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEEC-CCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEEC-CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 357999999 8999999999999999999999999976 47999999999999999999999999999999999998
Q ss_pred ccCccch
Q 012831 413 REKSKLV 419 (455)
Q Consensus 413 ~~k~k~~ 419 (455)
..+....
T Consensus 106 ~~~~~~~ 112 (216)
T 2qfj_A 106 SNIGQAQ 112 (216)
T ss_dssp SCCGGGH
T ss_pred CCccccc
Confidence 8776443
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=3.2e-13 Score=130.96 Aligned_cols=82 Identities=15% Similarity=0.250 Sum_probs=75.5
Q ss_pred CCCcceEEEeCCCCCCCCHHHHH----HHhhccCCceeEEeecc-CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 335 VTGSRQIYLTFPAESTFTEDDVS----NYFNTYGPVDDVRIPCQ-QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~~teedLr----~~Fs~fG~I~~V~I~~d-k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
...+++|||+| |+.++|+++|+ ++|++||.|.+|+|+.+ ++||||||+|.+.++|++|++.+|+..|.|+.|.|
T Consensus 6 ~~~~~~l~V~n-lp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINN-LNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeC-CCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34688999999 89999999977 89999999999999875 78999999999999999999999999999999999
Q ss_pred EecccCcc
Q 012831 410 KPYREKSK 417 (455)
Q Consensus 410 k~a~~k~k 417 (455)
.+++.+..
T Consensus 85 ~~a~~~~~ 92 (282)
T 3pgw_A 85 QYAKTDSD 92 (282)
T ss_pred EEeccCcc
Confidence 99987653
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=1.9e-13 Score=129.71 Aligned_cols=80 Identities=16% Similarity=0.288 Sum_probs=74.9
Q ss_pred CCCCcceEEEeCCCCC-CCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 334 IVTGSRQIYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~-~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
..+.+++|||+| |+. ++|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++|++.+++..+.|+.|.|.++
T Consensus 30 ~~~~~~~l~V~n-Lp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 30 AGAGNSVLLVSN-LNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp GCCCCSEEEEES-CCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCCCEEEEeC-CCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 345789999999 898 99999999999999999999999976 899999999999999999999999999999999999
Q ss_pred ccC
Q 012831 413 REK 415 (455)
Q Consensus 413 ~~k 415 (455)
.++
T Consensus 108 ~~~ 110 (229)
T 2adc_A 108 KHQ 110 (229)
T ss_dssp SCC
T ss_pred cCc
Confidence 865
No 188
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=2.7e-13 Score=126.69 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=69.4
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
.++|||+| ||+++|+++|+++|++||+|..|+|+++ ++||||||+|.+.++|++|++.+ ++.++|+.|.|++++.
T Consensus 109 ~~~l~V~n-Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKG-FPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEEC-CCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecC-CCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 47999999 8999999999999999999999999986 57899999999999999999875 5699999999998765
No 189
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.8e-13 Score=120.73 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=67.0
Q ss_pred ceEEEeCCC----CCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECC----HHH----HHHHHH--hcCCe
Q 012831 339 RQIYLTFPA----ESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFAS----ADT----VKMILA--KGNPH 400 (455)
Q Consensus 339 rkIfVg~~l----~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~----~e~----A~~Al~--~ln~~ 400 (455)
.+||||+ | ++.++|++|++||++||+|.+|.++.| +++|||||+|.+ +++ |.+|+. .+|+.
T Consensus 3 ~kI~Vgn-L~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYP-AQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEE-SSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeC-CCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 6899999 9 999999999999999999999999998 689999999996 333 888888 68999
Q ss_pred eEcCeEEEEEeccc
Q 012831 401 FVCGARVLVKPYRE 414 (455)
Q Consensus 401 ~I~Gr~v~Vk~a~~ 414 (455)
.|+|+.|+|..-..
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999997654
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.42 E-value=6e-13 Score=112.92 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=69.5
Q ss_pred CCcceEEEeCCCCC----CCCHHHHHHHhhccCCceeEEeecc-----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeE
Q 012831 336 TGSRQIYLTFPAES----TFTEDDVSNYFNTYGPVDDVRIPCQ-----QKRMFGFVTFASADTVKMILAKGNPHFVCGAR 406 (455)
Q Consensus 336 ~~~rkIfVg~~l~~----~~teedLr~~Fs~fG~I~~V~I~~d-----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~ 406 (455)
..+++|+|.|+... +-++++|++.|++||+|.+|.|+.+ ++||||||+|.+.++|++|++.||+..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 46789999995421 2378999999999999999999975 46999999999999999999999999999999
Q ss_pred EEEEeccc
Q 012831 407 VLVKPYRE 414 (455)
Q Consensus 407 v~Vk~a~~ 414 (455)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999875
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.42 E-value=2.2e-13 Score=121.04 Aligned_cols=77 Identities=26% Similarity=0.462 Sum_probs=71.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
.+++|||+| ||.++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. .+.++|+.|.|.++
T Consensus 2 ~~~~l~v~n-Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGG-LNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECS-CCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 368999999 8999999999999999999999999986 5789999999999999999996 68999999999998
Q ss_pred ccCc
Q 012831 413 REKS 416 (455)
Q Consensus 413 ~~k~ 416 (455)
.++.
T Consensus 79 ~~~~ 82 (167)
T 2cjk_A 79 IPRD 82 (167)
T ss_dssp CCHH
T ss_pred cchh
Confidence 7654
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.41 E-value=2.3e-13 Score=125.06 Aligned_cols=77 Identities=16% Similarity=0.290 Sum_probs=72.8
Q ss_pred cceEEEeCCCCC-CCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccCc
Q 012831 338 SRQIYLTFPAES-TFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKS 416 (455)
Q Consensus 338 ~rkIfVg~~l~~-~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k~ 416 (455)
+++|||+| |+. .+++++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++|++.+++..++|+.|.|.++.++.
T Consensus 3 ~~~l~v~n-lp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSN-LNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEEC-CCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeC-CCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 58999999 898 99999999999999999999999976 8999999999999999999999999999999999998653
No 193
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.41 E-value=3e-13 Score=120.64 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=71.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc------CCCCeEEEEECCHHHHHHHHHhcCCeeEc---CeEE
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ------QKRMFGFVTFASADTVKMILAKGNPHFVC---GARV 407 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d------k~RGfaFVtF~~~e~A~~Al~~ln~~~I~---Gr~v 407 (455)
..++|||+| ||+++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..+. ++.+
T Consensus 2 ~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQ-VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEES-CCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeC-CCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 468999999 9999999999999999999999999986 46899999999999999999998987775 6788
Q ss_pred EEEecccCcc
Q 012831 408 LVKPYREKSK 417 (455)
Q Consensus 408 ~Vk~a~~k~k 417 (455)
.+.++.++..
T Consensus 81 ~~~~~~~~~~ 90 (175)
T 3nmr_A 81 QMKPADSEKN 90 (175)
T ss_dssp EEEECGGGCC
T ss_pred EEcccccccc
Confidence 8888776543
No 194
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5e-13 Score=111.77 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=68.6
Q ss_pred CCcce-EEEeCCCCCCCCHHH----HHHHhhcc-CCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEE
Q 012831 336 TGSRQ-IYLTFPAESTFTEDD----VSNYFNTY-GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLV 409 (455)
Q Consensus 336 ~~~rk-IfVg~~l~~~~teed----Lr~~Fs~f-G~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~V 409 (455)
+++.| |||+| |++.+++++ |+++|++| |+|.+|. .|||||+|.+.++|++|++.|++..+.||.|+|
T Consensus 6 ~p~~T~lYV~N-L~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYN-LPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEES-CCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeC-CCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34555 99999 999999988 55899999 5999993 499999999999999999999999999999999
Q ss_pred EecccCccch
Q 012831 410 KPYREKSKLV 419 (455)
Q Consensus 410 k~a~~k~k~~ 419 (455)
.+|+.+++..
T Consensus 79 ~~A~~~sd~~ 88 (96)
T 2diu_A 79 SFTPKNRELC 88 (96)
T ss_dssp ESSCCSCCCC
T ss_pred EecCCCccee
Confidence 9999987654
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.36 E-value=1.6e-12 Score=118.62 Aligned_cols=77 Identities=22% Similarity=0.365 Sum_probs=68.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcc----C-------CceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCe
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTY----G-------PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~f----G-------~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr 405 (455)
.+++|||+| ||.++|+++|+++|++| | .|.++.+.. +||||||+|.+.++|++|+ .+|++.|+|+
T Consensus 3 ~~~~l~V~n-Lp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGN-IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEES-CCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEETTE
T ss_pred ceeEEEEcC-CCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEEcCc
Confidence 468999999 99999999999999999 5 666666654 7999999999999999999 7899999999
Q ss_pred EEEEEecccCcc
Q 012831 406 RVLVKPYREKSK 417 (455)
Q Consensus 406 ~v~Vk~a~~k~k 417 (455)
.|.|.++.++..
T Consensus 79 ~i~v~~~~~~~~ 90 (198)
T 2yh0_A 79 SLKIRRPHDYQP 90 (198)
T ss_dssp EEEEECCCCCCC
T ss_pred eEEEeCCCCCCC
Confidence 999999887643
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.36 E-value=9.7e-13 Score=118.17 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=70.8
Q ss_pred CCCCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeec---cCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 334 IVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPC---QQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~---dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
.....++|||+| ||.++|+++|+++|++||.|..+.+.. .++||||||+|.+.++|++|++ ++++.+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~n-Lp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGN-LNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEEC-CCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeC-CCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 345678999999 899999999999999999887732222 2689999999999999999995 89999999999999
Q ss_pred ecccCcc
Q 012831 411 PYREKSK 417 (455)
Q Consensus 411 ~a~~k~k 417 (455)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987654
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.36 E-value=2.7e-12 Score=124.11 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=72.9
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecccC
Q 012831 336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREK 415 (455)
Q Consensus 336 ~~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~k 415 (455)
...++|||+| |+.++|+++|+++|++||.|.+|.|.. .||||||+|.+.++|++|++.++++.|.|+.|.|.++.+.
T Consensus 20 ~~~~~l~V~n-Lp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGN-LPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEES-CCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 4567999999 899999999999999999999999987 6899999999999999999999999999999999999864
Q ss_pred c
Q 012831 416 S 416 (455)
Q Consensus 416 ~ 416 (455)
.
T Consensus 97 ~ 97 (261)
T 3sde_A 97 A 97 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.34 E-value=2.4e-12 Score=114.89 Aligned_cols=76 Identities=22% Similarity=0.389 Sum_probs=69.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhcc----C-------CceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCe
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTY----G-------PVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~f----G-------~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr 405 (455)
..++|||+| ||.++|+++|+++|++| | .|.++.+.. +||||||+|.+.++|++|+ .++++.++|+
T Consensus 3 ~~~~l~V~n-Lp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGN-IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEES-CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred cccEEEEcC-CCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 468999999 99999999999999999 7 777887766 7899999999999999999 7899999999
Q ss_pred EEEEEecccCc
Q 012831 406 RVLVKPYREKS 416 (455)
Q Consensus 406 ~v~Vk~a~~k~ 416 (455)
.|.|.++.+..
T Consensus 79 ~i~v~~~~~~~ 89 (172)
T 2g4b_A 79 SLKIRRPHDYQ 89 (172)
T ss_dssp ECEEECCSSCC
T ss_pred eeeecCCcccC
Confidence 99999987654
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=104.08 Aligned_cols=78 Identities=13% Similarity=0.266 Sum_probs=66.1
Q ss_pred CcceEEEeCCCC------CCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEE
Q 012831 337 GSRQIYLTFPAE------STFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVK 410 (455)
Q Consensus 337 ~~rkIfVg~~l~------~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk 410 (455)
..++|-|..... ..+|+++|+++|++||+|.+|+|+. ++||||||+|.+.++|++|++.+ ..+.|+.|.|+
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l~V~ 85 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNE--VGLVDNPLKIS 85 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTC--CBCSSSBCEEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhc--CCCCCCeEEEE
Confidence 456777776332 4589999999999999999999984 68999999999999999999984 44689999999
Q ss_pred ecccCcc
Q 012831 411 PYREKSK 417 (455)
Q Consensus 411 ~a~~k~k 417 (455)
|++++..
T Consensus 86 ~a~~~~~ 92 (100)
T 2d9o_A 86 WLEGQPQ 92 (100)
T ss_dssp CSSCCCC
T ss_pred EccCCCC
Confidence 9988764
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=7.5e-12 Score=106.05 Aligned_cols=80 Identities=18% Similarity=0.134 Sum_probs=68.8
Q ss_pred CCcceEEEeCCCCC-CC--------CHHHHHHHhhccCCceeEEeecc------CCCCeEEEEECCHHHHHHHHHhcCCe
Q 012831 336 TGSRQIYLTFPAES-TF--------TEDDVSNYFNTYGPVDDVRIPCQ------QKRMFGFVTFASADTVKMILAKGNPH 400 (455)
Q Consensus 336 ~~~rkIfVg~~l~~-~~--------teedLr~~Fs~fG~I~~V~I~~d------k~RGfaFVtF~~~e~A~~Al~~ln~~ 400 (455)
.+++.|.+.|++.. .+ .+++|++.|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999995442 22 34799999999999999999986 36899999999999999999999999
Q ss_pred eEcCeEEEEEecccC
Q 012831 401 FVCGARVLVKPYREK 415 (455)
Q Consensus 401 ~I~Gr~v~Vk~a~~k 415 (455)
.++||.|.|.++.+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999997654
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.28 E-value=1.4e-12 Score=110.20 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=60.0
Q ss_pred EeCCCCCCCCHHHHHHHh------------hccCCceeEEeecc---CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEE
Q 012831 343 LTFPAESTFTEDDVSNYF------------NTYGPVDDVRIPCQ---QKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407 (455)
Q Consensus 343 Vg~~l~~~~teedLr~~F------------s~fG~I~~V~I~~d---k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v 407 (455)
+++ |++.+++++|+++| ++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..++||.|
T Consensus 20 ~~~-l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADG-LRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCC-cccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 455 56667777776666 99999999999987 479999999999999999999999999999999
Q ss_pred EEEec
Q 012831 408 LVKPY 412 (455)
Q Consensus 408 ~Vk~a 412 (455)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 202
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=2.5e-11 Score=104.63 Aligned_cols=79 Identities=13% Similarity=0.048 Sum_probs=68.8
Q ss_pred CcceEEEeCCCCCCC---------CHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEE
Q 012831 337 GSRQIYLTFPAESTF---------TEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARV 407 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~---------teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v 407 (455)
.++.|.+.|++...- .++||++.|++||+|.+|.|+.+..+|||||+|.+.++|++|++.||+..++||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 467788888654321 24689999999999999999988789999999999999999999999999999999
Q ss_pred EEEecccC
Q 012831 408 LVKPYREK 415 (455)
Q Consensus 408 ~Vk~a~~k 415 (455)
.|.++...
T Consensus 86 ~v~~~~~~ 93 (114)
T 3s6e_A 86 TAAYVPLP 93 (114)
T ss_dssp EEEEECHH
T ss_pred EEEEEcHH
Confidence 99998644
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.20 E-value=2.4e-11 Score=105.31 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=68.1
Q ss_pred CcceEEEeCCCCC----CCCHHHHHHHhhccCCceeEEeeccC--------CCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 337 GSRQIYLTFPAES----TFTEDDVSNYFNTYGPVDDVRIPCQQ--------KRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 337 ~~rkIfVg~~l~~----~~teedLr~~Fs~fG~I~~V~I~~dk--------~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
.++.|+|.|++.. +-.++||++.|++||+|.+|.|+.++ ++|||||+|.+.++|++|++.||+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5789999995432 22478999999999999999999862 46999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 012831 405 ARVLVKPYRE 414 (455)
Q Consensus 405 r~v~Vk~a~~ 414 (455)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998865
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=4.2e-11 Score=121.67 Aligned_cols=79 Identities=11% Similarity=0.220 Sum_probs=67.5
Q ss_pred CCCCCcceEEEeCC-CCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEc---Ce--E
Q 012831 333 PIVTGSRQIYLTFP-AESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC---GA--R 406 (455)
Q Consensus 333 ~~~~~~rkIfVg~~-l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~---Gr--~ 406 (455)
.....+++|||||. |+..+||++|+++|++||+|++|.|+. +||||||+|.+.++|++|++.||+..+. |+ .
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 34567899999983 468999999999999999999999877 7899999999999999999999999883 45 4
Q ss_pred EEEEecc
Q 012831 407 VLVKPYR 413 (455)
Q Consensus 407 v~Vk~a~ 413 (455)
+.|..++
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 5666654
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=3.3e-09 Score=87.86 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=64.3
Q ss_pred CCCCcceEEEeCCCC----CCCCH----HHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCe
Q 012831 334 IVTGSRQIYLTFPAE----STFTE----DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGA 405 (455)
Q Consensus 334 ~~~~~rkIfVg~~l~----~~~te----edLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr 405 (455)
.+|..-||+|.- .+ .++-. .+|.+.|++||+|..++++.|+ +||+|.+.++|.+|++ ||+..++||
T Consensus 3 ~GPpd~tv~V~~-~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 3 SGSSGGTVLVSI-KSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CCCSSCEEEEEE-ECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCCCeEEEEe-ccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 456677888877 44 23333 6789999999999999999865 8999999999999998 899999999
Q ss_pred EEEEEecccC
Q 012831 406 RVLVKPYREK 415 (455)
Q Consensus 406 ~v~Vk~a~~k 415 (455)
.|+|+.+.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998764
No 206
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=5.4e-08 Score=81.12 Aligned_cols=74 Identities=23% Similarity=0.239 Sum_probs=63.2
Q ss_pred CCCCCcceEEEeCCCCCC------CCH---HHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEc
Q 012831 333 PIVTGSRQIYLTFPAEST------FTE---DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVC 403 (455)
Q Consensus 333 ~~~~~~rkIfVg~~l~~~------~te---edLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~ 403 (455)
..+|..-||+|.- +++. +.+ .+|.+.|++||+|..|+++.|+ +||+|.+.++|.+||+ ||+..++
T Consensus 10 ~~GPpD~Tv~V~~-~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 10 FQGPLDATVVVNL-QSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCCCTTCEEEEEE-SSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEET
T ss_pred ecCCCCCeEEEEe-cCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeC
Confidence 4567788999987 5532 221 5688999999999999999976 9999999999999999 8999999
Q ss_pred CeEEEEEec
Q 012831 404 GARVLVKPY 412 (455)
Q Consensus 404 Gr~v~Vk~a 412 (455)
||.|+|+.-
T Consensus 84 Gr~L~V~~k 92 (95)
T 1ufw_A 84 GRAVKISGP 92 (95)
T ss_dssp TEEEEEECC
T ss_pred CeEEEEecc
Confidence 999999864
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=8.2e-08 Score=83.64 Aligned_cols=77 Identities=10% Similarity=0.012 Sum_probs=67.6
Q ss_pred CCCcceEEEeCCCCCC-CCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECC-HHHHHHHHHhcC--CeeEcCeEEEEE
Q 012831 335 VTGSRQIYLTFPAEST-FTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFAS-ADTVKMILAKGN--PHFVCGARVLVK 410 (455)
Q Consensus 335 ~~~~rkIfVg~~l~~~-~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~-~e~A~~Al~~ln--~~~I~Gr~v~Vk 410 (455)
-+...-|||+| ++.. +++++|+++|++||+|..|.++.+. -.|||.|.+ +++|+.|+.++| +..|+|..+.+.
T Consensus 15 ~~~G~il~v~~-l~~~~~sredLke~F~~~G~V~~Vd~~~g~--~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 15 EKIGCLLKFSG-DLDDQTCREDLHILFSNHGEIKWIDFVRGA--KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCCEEEEEE-SCCSSCCHHHHHHHTCSSCCEEEEECCTTC--SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred ccCCeEEEEec-CCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 35677899999 8888 9999999999999999999999864 379999999 899999999984 889999988887
Q ss_pred eccc
Q 012831 411 PYRE 414 (455)
Q Consensus 411 ~a~~ 414 (455)
...-
T Consensus 92 vL~G 95 (121)
T 1owx_A 92 VLEG 95 (121)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 6654
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.51 E-value=8.9e-08 Score=90.02 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhccCCceeEEeecc--------CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEeccc
Q 012831 351 FTEDDVSNYFNTYGPVDDVRIPCQ--------QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYRE 414 (455)
Q Consensus 351 ~teedLr~~Fs~fG~I~~V~I~~d--------k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~~ 414 (455)
-.+++|++.|++||+|.+|.|+.+ +++||+||+|.+.++|++|++.||+..++||.|.|..+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 457899999999999999999843 5789999999999999999999999999999999998764
No 209
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.69 E-value=1.9e-05 Score=66.73 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=29.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh-CCCCCC--------
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN-RNERSD-------- 330 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~-r~~r~d-------- 330 (455)
+|++||+|.++. +++++ ++++|||||.|. ++|.+|+.. .+...+
T Consensus 25 ~F~~~G~v~~v~-------------------i~~d~------~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 25 TFSAFGNILSCK-------------------VVCDE------NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp HHGGGSCEEEEE-------------------EEEET------TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHhccCCEEEEE-------------------EeecC------CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 699999998876 45552 347899999996 677787753 111100
Q ss_pred ----------CCCCCCCcceEEEeCCCCCCCCHHH
Q 012831 331 ----------PGPIVTGSRQIYLTFPAESTFTEDD 355 (455)
Q Consensus 331 ----------~~~~~~~~rkIfVg~~l~~~~teed 355 (455)
........++|||+| |+.++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~N-l~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKN-FGPGSTRAA 113 (115)
T ss_dssp SSCCCC-----------------------------
T ss_pred CCCccccccccccccCCCCceEeCC-CCCCccccc
Confidence 011122445899999 899988864
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.00026 Score=59.67 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=65.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhc-----cCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEe
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNT-----YGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKP 411 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~-----fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~ 411 (455)
..++|.|.+ +|..+.++.|+-||+. =|+|++|+... +-|+|+|.+++.|+++|++ ..|.++|.+|.|.+
T Consensus 7 ~~~~I~V~~-lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRG-LPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEES-CCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEE
T ss_pred CccEEEEEC-CCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEc
Confidence 467999999 8999999999999987 38888887754 6799999999999999997 79999999999999
Q ss_pred cccCcc
Q 012831 412 YREKSK 417 (455)
Q Consensus 412 a~~k~k 417 (455)
+.++-.
T Consensus 81 ~~~~~~ 86 (104)
T 2dhx_A 81 APPRAP 86 (104)
T ss_dssp CCCCCC
T ss_pred CCCCCc
Confidence 887654
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0013 Score=56.20 Aligned_cols=74 Identities=8% Similarity=0.051 Sum_probs=65.6
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhcc-----CCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTY-----GPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~f-----G~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
.++|=+=+ +|.+++...|+.+.++| |.|+.|.+..|. +=|+|.|.+...|-+|.=.+++..|.|++|+|...
T Consensus 21 ~rtiaL~~-ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFP-LSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEEC-CCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEec-CCCCCCHHHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 57888888 89999999999999999 999999999863 56999999999988887777999999999999865
Q ss_pred cc
Q 012831 413 RE 414 (455)
Q Consensus 413 ~~ 414 (455)
.+
T Consensus 98 ~e 99 (117)
T 2l9w_A 98 ND 99 (117)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 212
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.89 E-value=0.00036 Score=56.51 Aligned_cols=56 Identities=14% Similarity=0.279 Sum_probs=38.4
Q ss_pred HHhhcC-ceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCc
Q 012831 262 YYEKYG-KVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGS 338 (455)
Q Consensus 262 yF~kfG-~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~ 338 (455)
+|++|| +|.++. ++++ +.+++++|||||.|. ++|.+|+...... ..-..
T Consensus 21 ~F~~~G~~v~~v~-------------------i~~d----~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~-----~~~~g 72 (91)
T 2lxi_A 21 QLQSHGVQAREVR-------------------LMRN----KSSGQSRGFAFVEFSHLQDATRWMEANQHS-----LNILG 72 (91)
T ss_dssp HHHHHTCCCSBCC-------------------SSSC----SSSCCCSSEEEEECSSHHHHHHHHHTTTTE-----EEETT
T ss_pred HHHHhCCEeEEEE-------------------EEec----CCCCCcCceEEEEecCHHHHHHHHHhcCCC-----eEECC
Confidence 699999 787766 4555 567999999999996 6888888632111 11134
Q ss_pred ceEEEeC
Q 012831 339 RQIYLTF 345 (455)
Q Consensus 339 rkIfVg~ 345 (455)
++|.|..
T Consensus 73 r~i~V~~ 79 (91)
T 2lxi_A 73 QKVSMHY 79 (91)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 6777765
No 213
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.89 E-value=0.00057 Score=57.12 Aligned_cols=23 Identities=26% Similarity=0.785 Sum_probs=12.1
Q ss_pred Ccccccc-cCcccCCCCCCccccC
Q 012831 183 VKTCHYF-NKGFCKHGSNCRYYHG 205 (455)
Q Consensus 183 ~kpC~Yf-~rG~Ck~G~sCry~Hg 205 (455)
..+|+|| .+|.|++|..|+|.|.
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~ 59 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHD 59 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCC
Confidence 3455544 3555555555555554
No 214
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.88 E-value=0.00044 Score=57.72 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=48.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh-CCCCCCCCCCCCCc
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN-RNERSDPGPIVTGS 338 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~-r~~r~d~~~~~~~~ 338 (455)
+|++||.|..+. +.++ ++++||+||.|. ++|.+++.. .+... ..
T Consensus 28 ~F~~~G~v~~v~-------------------i~~~-------~~~~g~afV~f~~~~~A~~A~~~l~g~~~-------~g 74 (115)
T 3lqv_A 28 IFGKYGPIRQIR-------------------VGNT-------PETRGTAYVVYEDIFDAKNAVDHLSGFNV-------SN 74 (115)
T ss_dssp HHHTTSCEEEEE-------------------EECS-------TTTTTCEEEEESSHHHHHHHHHHHTTCBS-------SS
T ss_pred HHHhcCCeEEEE-------------------EeeC-------CCCCcEEEEEECCHHHHHHHHHHcCCCEE-------CC
Confidence 799999998865 3333 556999999996 577777763 22211 23
Q ss_pred ceEEEeCC--------CCCCCCHHHHHHHhhccCC
Q 012831 339 RQIYLTFP--------AESTFTEDDVSNYFNTYGP 365 (455)
Q Consensus 339 rkIfVg~~--------l~~~~teedLr~~Fs~fG~ 365 (455)
++|.|... ++...++++|+++|++||-
T Consensus 75 ~~l~v~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 75 RYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CBCEEEECCHHHHTTTSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEEEEecCChhhhhhhHhHhHHHHHHHHHHhCC
Confidence 34444331 3445779999999999984
No 215
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.85 E-value=0.00019 Score=56.73 Aligned_cols=25 Identities=28% Similarity=0.826 Sum_probs=22.8
Q ss_pred CCCcccccccCcccCCCCCCccccC
Q 012831 181 LPVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 181 ~~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
....+|+||.+|.|++|++|+|+|.
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHE 38 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCS
T ss_pred CcCeeCHHHhcCCCCCCCCCCCccc
Confidence 3567999999999999999999997
No 216
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.85 E-value=0.00073 Score=55.63 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=39.3
Q ss_pred CCccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHH
Q 012831 251 NPISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPK 320 (455)
Q Consensus 251 ~p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k 320 (455)
.-+.|.+||.. +|++||+|..+. +.++ +.+++++|||||.|. ++|.+
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~-------------------i~~d----~~tg~~kG~afV~f~~~~~A~~ 76 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAK-------------------LIRD----KVAGHSLGYGFVNYVTAKDAER 76 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEE-------------------EEEC----SSSCCEEEEEEEEESSHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeE-------------------eeec----CCCCcccccEEEEECCHHHHHH
Confidence 34566777654 799999998876 5566 567999999999996 57888
Q ss_pred HHhh
Q 012831 321 YLEN 324 (455)
Q Consensus 321 ~~~~ 324 (455)
|+..
T Consensus 77 Ai~~ 80 (99)
T 4fxv_A 77 AINT 80 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 217
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.79 E-value=0.00076 Score=56.74 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=39.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCcc
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGSR 339 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~r 339 (455)
+|++||+|.++. ++++ +.+++++|||||+|. ++|.+|+..-... .-..+
T Consensus 26 ~F~~~G~i~~v~-------------------i~~d----~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~------~~~gr 76 (110)
T 3s8s_A 26 MCRKYGEVEEVE-------------------ILLH----PRTRKHLGLARVLFTSTRGAKETVKNLHLT------SVMGN 76 (110)
T ss_dssp HHTTTSCEEEEE-------------------EEEC----TTTCCEEEEEEEEESSHHHHHHHHHHHTTC------EETTE
T ss_pred HHHhcCCeeEEE-------------------EEEC----CCCCceeeEEEEEECCHHHHHHHHHHhCCC------EECCe
Confidence 699999999876 6666 567999999999996 6788887632211 11346
Q ss_pred eEEEeC
Q 012831 340 QIYLTF 345 (455)
Q Consensus 340 kIfVg~ 345 (455)
+|.|..
T Consensus 77 ~i~V~~ 82 (110)
T 3s8s_A 77 IIHAQL 82 (110)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 677765
No 218
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.74 E-value=0.00069 Score=55.60 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=31.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. ++++ +.|++++|||||.|. ++|.+|+.
T Consensus 32 ~F~~~G~i~~v~-------------------i~~d----~~tg~~kG~afV~f~~~~~A~~Ai~ 72 (100)
T 3ns6_A 32 LFSKAGKVVNME-------------------FPID----EATGKTKGFLFVECGSMNDAKKIIK 72 (100)
T ss_dssp HHHTTSCEEEEE-------------------CCEE----TTTTEECSEEEEEESSHHHHHHHHH
T ss_pred HHHhcCCEeEEE-------------------EEEc----CCCCccceEEEEEECCHHHHHHHHH
Confidence 699999999876 4555 467899999999996 57888876
No 219
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.00038 Score=55.53 Aligned_cols=24 Identities=29% Similarity=0.899 Sum_probs=22.2
Q ss_pred CCcccccccCcccCCCCCCccccC
Q 012831 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 182 ~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
--.+|+||.+|.|++|++|+|+|.
T Consensus 9 k~~~C~~fl~G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 9 KTVVCKHWLRGLCKKGDQCEFLHE 32 (77)
T ss_dssp TTSBCHHHHTTCCSCTTSSSSBCS
T ss_pred cceeCHhHccCcCCCCCCCCCccc
Confidence 456999999999999999999997
No 220
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.58 E-value=0.0015 Score=54.24 Aligned_cols=38 Identities=29% Similarity=0.429 Sum_probs=30.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +.++ +. ++++|||||+|. ++|.+++.
T Consensus 31 ~F~~~G~v~~v~-------------------i~~d----~~-g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 31 WLEDKGQVLNIQ-------------------MRRT----LH-KAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp HHHTSSCEEEEE-------------------EECC----CT-TSCCCEEEEEESSHHHHHHHHT
T ss_pred HHhhcCCEEEEE-------------------EEEC----CC-CCCccEEEEEECCHHHHHHHHH
Confidence 799999998876 5555 23 889999999996 57778887
No 221
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.50 E-value=0.011 Score=51.18 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=59.6
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcC-eEEEEEecccCc
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG-ARVLVKPYREKS 416 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~G-r~v~Vk~a~~k~ 416 (455)
.+-|-|=| .+.. ....|-++|++||+|.+..... ...+-.|+|+++.+|++||.+ |+..|+| -.|-|++...+.
T Consensus 24 ~~wVtVFG-Fp~~-~~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~~ 98 (119)
T 1wwh_A 24 DTWVTVFG-FPQA-SASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCIDKN 98 (119)
T ss_dssp GGEEEEEC-CCGG-GHHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCCHH
T ss_pred CCEEEEEC-CCHH-HHHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCHH
Confidence 45677766 3444 3577889999999999998743 567999999999999999999 9999985 778888876543
No 222
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=96.48 E-value=0.00065 Score=53.21 Aligned_cols=22 Identities=36% Similarity=1.054 Sum_probs=20.3
Q ss_pred cccccccCcccCCCCC-CccccC
Q 012831 184 KTCHYFNKGFCKHGSN-CRYYHG 205 (455)
Q Consensus 184 kpC~Yf~rG~Ck~G~s-Cry~Hg 205 (455)
.+|++|.+|.|++|++ |+|+|.
T Consensus 7 ~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 7 EVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EBCHHHHTTCCSSCTTTCSSBCC
T ss_pred hhCHHHhcCCCCCCCCCCCCccC
Confidence 4899999999999995 999997
No 223
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.44 E-value=0.00064 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.973 Sum_probs=21.6
Q ss_pred CcccccccCcccCCCCCCccccC
Q 012831 183 VKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 183 ~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
.+.|.+|.+|.|+.|+.|.|+||
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHG 42 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSS
T ss_pred cccCcccCcCCCCCCCccCCcCC
Confidence 38999889999999999999999
No 224
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.33 E-value=0.0017 Score=51.92 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=30.1
Q ss_pred HHhhcC--ceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYG--KVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG--~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++|| +|.++. ++++ +.+++++|||||.|. ++|.+++.
T Consensus 21 ~F~~~G~~~v~~v~-------------------i~~~----~~~g~~kG~afV~f~~~~~a~~Ai~ 63 (90)
T 3p5t_L 21 AVHSLGVNDILEIK-------------------FFEN----RANGQSKGFALVGVGSEASSKKLMD 63 (90)
T ss_dssp HHHTTTCCCCCCEE-------------------EEEC----TTTCCEEEEEEECC-CHHHHHHHHH
T ss_pred HHHHhCCCceEEEE-------------------EEec----CCCCccCcEEEEEECCHHHHHHHHH
Confidence 689999 887765 5555 567999999999996 57777775
No 225
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.32 E-value=0.0013 Score=54.06 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.6
Q ss_pred cccCCCccceeEEcc--ccHHHHHhh
Q 012831 301 RLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 301 r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+.++++||||||.|. ++|.+++..
T Consensus 47 ~~tg~srG~aFV~f~~~~~A~~Ai~~ 72 (95)
T 2lkz_A 47 KQTQQNRGFAFVQLSSAMDASQLLQI 72 (95)
T ss_dssp SSSSSCSSEEEEECSSSHHHHHHHHH
T ss_pred CCCCCCceEeEEEECCHHHHHHHHHH
Confidence 567999999999996 577777763
No 226
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.23 E-value=0.0034 Score=52.26 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=39.4
Q ss_pred CCccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHH
Q 012831 251 NPISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPK 320 (455)
Q Consensus 251 ~p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k 320 (455)
..+.|.+||.. +|++||+|..+. +.++ +.+++++|||||.|. ++|.+
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~-------------------i~~~----~~tg~~kg~afV~f~~~~~A~~ 82 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFGQFGEVKECL-------------------VMRD----PLTKRSRGFGFVTFMDQAGVDK 82 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------------------ECCC----TTTCCCTTCEEEEESSHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHccCCeEEEE-------------------EEEC----CCCCCcCcEEEEEECCHHHHHH
Confidence 45677777744 899999998876 4444 457899999999996 57888
Q ss_pred HHhh
Q 012831 321 YLEN 324 (455)
Q Consensus 321 ~~~~ 324 (455)
++..
T Consensus 83 Ai~~ 86 (109)
T 2rs2_A 83 VLAQ 86 (109)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 8874
No 227
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.22 E-value=0.0031 Score=49.67 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=31.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 31 ~F~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 31 YFTKFGEVVDCT-------------------IKMD----PNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp HHTTTSCEEEEE-------------------EEEC----TTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred HHHhCCCEEEEE-------------------Eeec----CCCCccccEEEEEECCHHHHHHHHHh
Confidence 799999998876 4555 457899999999996 577888863
No 228
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0025 Score=56.17 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=27.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA 315 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~ 315 (455)
||++||+|..+. +..| +.|++++||+||.|.
T Consensus 26 ~Fs~fGeV~~~~-------------------li~D----p~Tg~slGfgfVef~ 56 (136)
T 2j8a_A 26 YFKKYGEISHFE-------------------AFND----PNSALPLHVYLIKYA 56 (136)
T ss_dssp HHHTTSCCSEEE-------------------EEEC----TTTCCEEEEEEEECC
T ss_pred HHHhcCCeEEEE-------------------EEec----CCCCceeeEEEEEEC
Confidence 799999998876 6666 778999999999998
No 229
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.21 E-value=0.0032 Score=54.30 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=44.3
Q ss_pred HHHHHHhhcCCCCccccccchH--------HHhhcCcee----eeccccccccccccccccceeeEeeccccccccCCCc
Q 012831 240 EIIELLKARRGNPISIASLPML--------YYEKYGKVL----QAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPH 307 (455)
Q Consensus 240 ei~Ell~~~~~~p~~i~~lP~~--------yF~kfG~Vl----~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsr 307 (455)
+.+++|.......+.|.+||+. +|++||.|. .+. +.++ .+++++
T Consensus 13 ~~~~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~-------------------i~~d-----~~gr~~ 68 (123)
T 2dha_A 13 EVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL-------------------FVTY-----PDGRPT 68 (123)
T ss_dssp HHHHHHHCCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEE-------------------EEEC-----TTSCEE
T ss_pred hHHhhccCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEE-------------------EEEC-----CCCCEe
Confidence 3455666555567899999976 999999763 322 3343 268999
Q ss_pred cceeEEcc--ccHHHHHhh
Q 012831 308 GQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 308 G~gfV~f~--eda~k~~~~ 324 (455)
||+||.|. ++|.+++..
T Consensus 69 G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 69 GDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp EEEEECCSSHHHHHHHHTT
T ss_pred eEEEEEECCHHHHHHHHHh
Confidence 99999996 578888873
No 230
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=96.20 E-value=0.0015 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.879 Sum_probs=21.0
Q ss_pred CcccccccCcccCCCC-CCccccC
Q 012831 183 VKTCHYFNKGFCKHGS-NCRYYHG 205 (455)
Q Consensus 183 ~kpC~Yf~rG~Ck~G~-sCry~Hg 205 (455)
..+|++|.+|.|+||+ .|+|+|.
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHP 32 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCC
T ss_pred chhcHHHhcCCCCCCCCCCCCcCC
Confidence 4589999999999995 9999997
No 231
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.15 E-value=0.0084 Score=52.61 Aligned_cols=63 Identities=17% Similarity=0.315 Sum_probs=50.2
Q ss_pred CCHHHHHHHhhccCCcee-EEeecc-----------------CCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 351 FTEDDVSNYFNTYGPVDD-VRIPCQ-----------------QKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 351 ~teedLr~~Fs~fG~I~~-V~I~~d-----------------k~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
.....|-++|++||.|.+ +.+..+ .....--|+|+++.+|++||.+ |+..|+|..|-|+++
T Consensus 18 ~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 18 TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPY 96 (132)
T ss_dssp GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEEC
T ss_pred HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEEC
Confidence 346778899999999987 322210 1245779999999999999999 999999999999998
Q ss_pred cc
Q 012831 413 RE 414 (455)
Q Consensus 413 ~~ 414 (455)
.+
T Consensus 97 ~~ 98 (132)
T 3p3d_A 97 TK 98 (132)
T ss_dssp CH
T ss_pred CH
Confidence 63
No 232
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.08 E-value=0.016 Score=48.84 Aligned_cols=75 Identities=11% Similarity=0.010 Sum_probs=62.2
Q ss_pred cceEEEeCCCCCCC-CH----HHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEec
Q 012831 338 SRQIYLTFPAESTF-TE----DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPY 412 (455)
Q Consensus 338 ~rkIfVg~~l~~~~-te----edLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a 412 (455)
.++|+|.+ ++.++ +. +.++++|.+|+++........ -.=.-|.|.++++|.+|-..+++..++|++++|..+
T Consensus 5 pntLiitn-l~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS--FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 5 SSGLIACV-ANDDVFSESETRAKFESLFRTYDKDTTFQYFKS--FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp CCEEEEEC-CCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT--TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred CceEEEec-CCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc--ceEEEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 46899999 67644 32 467899999999998877763 223799999999999999999999999999999998
Q ss_pred ccC
Q 012831 413 REK 415 (455)
Q Consensus 413 ~~k 415 (455)
.+-
T Consensus 82 q~~ 84 (104)
T 1wey_A 82 QTL 84 (104)
T ss_dssp CCS
T ss_pred CCC
Confidence 843
No 233
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.07 E-value=0.0049 Score=50.38 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=32.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. ++++ +.+++++||+||.|. ++|.+++..
T Consensus 36 ~F~~~G~v~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 36 YFSQYGEVVDCV-------------------IMKD----KTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp HHHTTSCEEEEE-------------------EEEC----SSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EeeC----CCCCCcceEEEEEECCHHHHHHHHHh
Confidence 799999998876 5555 457889999999996 678888875
No 234
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.04 E-value=0.0038 Score=55.76 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=46.0
Q ss_pred CCccccccchH--------HHhhcC--ceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccH
Q 012831 251 NPISIASLPML--------YYEKYG--KVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDA 318 (455)
Q Consensus 251 ~p~~i~~lP~~--------yF~kfG--~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda 318 (455)
..+.|.+||.. +|++|| +|..+. +++| +.+++++|||||.|. ++|
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~-------------------i~~d----~~tg~skGfaFV~f~~~~~A 112 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELK-------------------FAEN----RANGQSKGYAEVVVASENSV 112 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEE-------------------EEEC----TTTCCEEEEEEEEESCHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEE-------------------EEec----CCCCccceEEEEEECCHHHH
Confidence 34666777644 799999 888876 5566 567999999999996 578
Q ss_pred HHHHhhCCCCCCCCCCCCCcceEEEeC
Q 012831 319 PKYLENRNERSDPGPIVTGSRQIYLTF 345 (455)
Q Consensus 319 ~k~~~~r~~r~d~~~~~~~~rkIfVg~ 345 (455)
.+|+..-... .-..++|.|..
T Consensus 113 ~~Ai~~lng~------~~~Gr~l~V~~ 133 (156)
T 3n9u_C 113 HKLLELLPGK------VLNGEKVDVRP 133 (156)
T ss_dssp HHHHHHSTTC------EETTEECEEEE
T ss_pred HHHHHHcCCC------EECCeEeEEEE
Confidence 8888742211 11346677765
No 235
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=95.99 E-value=0.0036 Score=47.80 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=30.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|..+. +.++ +.+++++|++||.|. ++|.+++..
T Consensus 19 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 19 YFGGFGEVESIE-------------------LPMD----NKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp HHHHHSCCSEEC-------------------CCCS----CCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred HHHhcCCeEEEE-------------------EEec----CCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 689999998765 3333 456889999999996 578888874
No 236
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.98 E-value=0.004 Score=48.97 Aligned_cols=26 Identities=27% Similarity=0.876 Sum_probs=22.6
Q ss_pred CCCCccccccc-CcccCCCCCCccccC
Q 012831 180 ELPVKTCHYFN-KGFCKHGSNCRYYHG 205 (455)
Q Consensus 180 ~~~~kpC~Yf~-rG~Ck~G~sCry~Hg 205 (455)
...-++|+||. .|.|+.|.+|+|+|+
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~ 35 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHG 35 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSS
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCC
Confidence 44567999884 899999999999998
No 237
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.96 E-value=0.004 Score=47.70 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=31.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++|++||.|. ++|.+++..
T Consensus 20 ~F~~~G~v~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~a~~~ 61 (77)
T 1uaw_A 20 YFGQFGEVKECL-------------------VMRD----PLTKRSRGFGFVTFMDQAGVDKVLAQ 61 (77)
T ss_dssp HHTTTSCCCCEE-------------------EECC----CCSSSCSSEEEECCCCTTHHHHHHHT
T ss_pred HHHhcCCEEEEE-------------------EecC----CCCCCcCceEEEEEcCHHHHHHHHHh
Confidence 689999987765 4444 456889999999995 678888874
No 238
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.95 E-value=0.0058 Score=50.80 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=37.3
Q ss_pred CccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHH
Q 012831 252 PISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKY 321 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~ 321 (455)
.+.|.+||.. +|++||+|..+. +.++ +.+++++||+||.|. ++|.++
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~a~~A 83 (114)
T 2cq4_A 27 TVFCMQLAARIRPRDLEDFFSAVGKVRDVR-------------------IISD----RNSRRSKGIAYVEFCEIQSVPLA 83 (114)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------------------ECCS----CCSSSCCCCEEEEESCGGGHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEeEEE-------------------EEec----CCCCccCcEEEEEeCcHHHHHHH
Confidence 4566777744 899999998876 4444 456889999999996 678888
Q ss_pred Hh
Q 012831 322 LE 323 (455)
Q Consensus 322 ~~ 323 (455)
+.
T Consensus 84 ~~ 85 (114)
T 2cq4_A 84 IG 85 (114)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 239
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.94 E-value=0.0049 Score=50.18 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=31.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+. ++++ +.+++++||+||.|. ++|.+++.
T Consensus 35 ~F~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 35 YFSTFGEVLMVQ-------------------VKKD----LKTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp HHGGGSCEEEEE-------------------EEEC----SSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEec----CCCCCccceEEEEECCHHHHHHHHH
Confidence 799999998876 5555 456899999999996 57788887
No 240
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=95.94 E-value=0.0053 Score=46.90 Aligned_cols=39 Identities=31% Similarity=0.370 Sum_probs=29.9
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+. +.++ +.+++++|++||.|. ++|.+++.
T Consensus 19 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 19 YFEQFGKVDDAM-------------------LMFD----KTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp HHHTTSCCSEEC-------------------CCBC----SSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred HHHhcCCEEEEE-------------------EEec----CCCCCcCcEEEEEECCHHHHHHHHH
Confidence 689999998866 3333 346889999999996 56777775
No 241
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.92 E-value=0.0046 Score=50.01 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=31.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. ++++ +.+++++||+||.|. ++|.+++..
T Consensus 30 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2dgs_A 30 YFKKFGVVTEVV-------------------MIYD----AEKQRPRGFGFITFEDEQSVDQAVNM 71 (99)
T ss_dssp HHSSSSCEEEEE-------------------ECCC----TTTCSCCSEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEeC----CCCCCCCceEEEEECCHHHHHHHHHh
Confidence 699999998876 4444 456889999999996 577888863
No 242
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.91 E-value=0.005 Score=50.65 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=31.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|..+. ++++ +.+++++||+||.|. ++|.+++..
T Consensus 35 ~F~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 35 VLQQFGDLKYVR-------------------VVLH----PDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp HHHTTSCEEEEE-------------------CCBC----SSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEec----CCCCCCccEEEEEECCHHHHHHHHHH
Confidence 799999998876 4444 456889999999996 577888764
No 243
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=95.85 E-value=0.0066 Score=47.58 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=31.3
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 26 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 26 AFAPFGRISDAR-------------------VVKD----MATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp HHGGGSCEEEEE-------------------EEEC----TTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCEeEEE-------------------EEec----CCCCccceEEEEEECCHHHHHHHHHH
Confidence 689999998866 4454 456889999999996 577788763
No 244
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=95.84 E-value=0.0065 Score=49.35 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=31.0
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+. ++++ + +++++||+||.|. ++|.+++.
T Consensus 29 ~F~~~G~i~~v~-------------------i~~~----~-~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 29 FFARYGSVKEVK-------------------IITD----R-TGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp HHGGGSCEEEEE-------------------EEEC----T-TSCEEEEEEEEESSCCCHHHHTT
T ss_pred HHHhCCCeEEEE-------------------EEEC----C-CCCccceEEEEECCHHHHHHHHh
Confidence 799999998866 5555 3 6889999999995 68888877
No 245
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=95.82 E-value=0.0061 Score=47.33 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=30.9
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+. ++++ +.+++++|++||.|. ++|.+++.
T Consensus 21 ~f~~~G~i~~~~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~a~~ 61 (83)
T 3md1_A 21 AFKDFPSYLSGH-------------------VMWD----MQTGSSRGYGFVSFTSQDDAQNAMD 61 (83)
T ss_dssp HHTTSTTEEEEE-------------------EEEC----TTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred HHHhcCCeeEEE-------------------EEEc----CCCCCccceEEEEECCHHHHHHHHH
Confidence 689999998865 4555 456889999999996 57777776
No 246
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.81 E-value=0.0026 Score=53.12 Aligned_cols=31 Identities=29% Similarity=0.859 Sum_probs=25.0
Q ss_pred CCCcccccccCcccCCCCCCccccC-Cccchh
Q 012831 181 LPVKTCHYFNKGFCKHGSNCRYYHG-LVSESF 211 (455)
Q Consensus 181 ~~~kpC~Yf~rG~Ck~G~sCry~Hg-~~~~~~ 211 (455)
..-.+|+||.+|.|++|.+|+|.|. .+=..|
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H~~~~C~~f 42 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMHGDFPCKLY 42 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSSSSBCSHH
T ss_pred CCCccCcccccCcCCCCCCCCCCCCCCcCcCc
Confidence 3456899999999999999999995 554434
No 247
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=95.80 E-value=0.0064 Score=49.65 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=31.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 43 ~f~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 43 KFAEYGEIKNIH-------------------LNLD----RRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp HHGGGSCEEEEE-------------------EEEC----TTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred HHhccCCeEEEE-------------------EEec----CCCCceeeEEEEEECCHHHHHHHHHH
Confidence 799999998866 5555 456889999999996 577788763
No 248
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.79 E-value=0.0064 Score=49.49 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=31.3
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 33 ~f~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 33 VFEKYGRVGDVY-------------------IPRE----PHTKAPRGFAFVRFHDRRDAQDAEAA 74 (103)
T ss_dssp HHTTTSCEEEEE-------------------CCBC----SSSCSBCSCEEEEESSSSHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EEeC----CCCCCCCeEEEEEECCHHHHHHHHHH
Confidence 799999998865 3344 456889999999995 678888873
No 249
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=95.77 E-value=0.0049 Score=50.36 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=31.2
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. ++++ +.+++++||+||.|. ++|.+++..
T Consensus 33 ~F~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 33 LFEEFGKIYELT-------------------VLKD----RFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp HHHHHSCCCEEE-------------------CCCC----SSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCeeEEE-------------------EEec----CCCCCcceEEEEEECCHHHHHHHHHH
Confidence 699999998865 3444 457889999999996 577787763
No 250
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.77 E-value=0.0083 Score=47.87 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=31.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 25 ~f~~~G~v~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 25 IFEPFGKIDNIV-------------------LMKD----SDTGRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp HHTTTSCEEEEE-------------------EECC----SSSCCCCSEEEEEESCHHHHHHHHHH
T ss_pred HHHhcCCEeEEE-------------------Eeec----CCCCceeeEEEEEECCHHHHHHHHHH
Confidence 689999998866 4454 456889999999996 577788763
No 251
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.77 E-value=0.0062 Score=49.64 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=31.3
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. ++++ +.+++++||+||.|. ++|.+++..
T Consensus 35 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 35 LFLQAGPVVNTH-------------------MPKD----RVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp HHHTTSCEEEEE-------------------CCBC----SSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEec----CCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 799999998866 3343 346889999999996 578888874
No 252
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.76 E-value=0.0065 Score=47.56 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=30.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++.
T Consensus 25 ~f~~~G~i~~~~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 25 LCQPYGKIVSTK-------------------AILD----KTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp TSTTTSCEEEEE-------------------EECC----SSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEec----CCCCCcCcEEEEEECCHHHHHHHHH
Confidence 689999998865 4444 456889999999996 56777765
No 253
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.71 E-value=0.0017 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.895 Sum_probs=0.0
Q ss_pred Ccccc-cccCcccCCCCCCccccC
Q 012831 183 VKTCH-YFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 183 ~kpC~-Yf~rG~Ck~G~sCry~Hg 205 (455)
-++|. |+..|+|++|..|+|.|+
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~ 73 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHN 73 (77)
T ss_dssp ------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCC
Confidence 46898 667999999999999998
No 254
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=95.70 E-value=0.0091 Score=46.94 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=30.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+. +.++ +.+++++|++||.|. ++|.+++.
T Consensus 26 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~a~~ 66 (89)
T 3ucg_A 26 HFHGCGSVNRVT-------------------ILCD----KFSGHPKGFAYIEFSDKESVRTSLA 66 (89)
T ss_dssp HHGGGCCEEEEE-------------------EEES----CSSSSCCEEEEEEESSTHHHHHHGG
T ss_pred HHHhCCCEEEEE-------------------EEec----CCCCCcceEEEEEECCHHHHHHHHh
Confidence 799999998865 4444 456889999999996 57777773
No 255
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.70 E-value=0.0057 Score=50.98 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=37.9
Q ss_pred CccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHH
Q 012831 252 PISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKY 321 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~ 321 (455)
.+.|.+||.. +|++||+|..+. ++++ +.+++++||+||.|. ++|.++
T Consensus 29 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~a~~A 85 (116)
T 1x4b_A 29 KLFIGGLSFETTEESLRNYYEQWGKLTDCV-------------------VMRD----PASKRSRGFGFVTFSSMAEVDAA 85 (116)
T ss_dssp EEEEECCTTCCCHHHHHHHHTSSCCCSEEE-------------------EECC----TTTSSCCSEEEEECSSHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEE-------------------EEEC----CCCCCcCceEEEEeCCHHHHHHH
Confidence 4566777733 899999998765 4555 457889999999996 578888
Q ss_pred Hhh
Q 012831 322 LEN 324 (455)
Q Consensus 322 ~~~ 324 (455)
+..
T Consensus 86 i~~ 88 (116)
T 1x4b_A 86 MAA 88 (116)
T ss_dssp HTS
T ss_pred HHh
Confidence 874
No 256
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.69 E-value=0.0067 Score=48.90 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=31.3
Q ss_pred HHhhcCcee-eeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVL-QAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl-~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|. .+. +.++ +.+++++||+||.|. ++|.+++.
T Consensus 29 ~F~~~G~i~~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2div_A 29 AFATMGETVMSVK-------------------IIRN----RLTGIPAGYCFVEFADLATAEKCLH 70 (99)
T ss_dssp HHHHTTCCCCEEE-------------------EEEC----SSSCCEEEEEEEECSCHHHHHHHHH
T ss_pred HHHHhCCcceEEE-------------------Eeec----CCCCCcCCEEEEEeCCHHHHHHHHH
Confidence 699999988 765 5555 457899999999996 57888886
No 257
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=95.68 E-value=0.0088 Score=52.39 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=49.1
Q ss_pred CccccccchH--------HHhhcCc---eeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccH
Q 012831 252 PISIASLPML--------YYEKYGK---VLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDA 318 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG~---Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda 318 (455)
.+.|.+||.. +|++||. |..+. +.++ +. ++++||+||.|. ++|
T Consensus 46 ~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~-------------------i~~d----~~-g~srG~aFV~F~~~e~a 101 (136)
T 2hgl_A 46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVH-------------------FIYT----RE-GRQSGEAFVELGSEDDV 101 (136)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEE-------------------EEEC----SS-SCEEEEEEEECSSHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEE-------------------EEEC----CC-CCCCeEEEEEECCHHHH
Confidence 3566667754 8999998 55544 4555 33 899999999996 578
Q ss_pred HHHHhhCCCCCCCCCCCCCcceEEEeCCCCCCCCHHHHHHHhhccC
Q 012831 319 PKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYG 364 (455)
Q Consensus 319 ~k~~~~r~~r~d~~~~~~~~rkIfVg~~l~~~~teedLr~~Fs~fG 364 (455)
.+|+...+.. -..++|.|.. .+..++.......|
T Consensus 102 ~~Al~~~g~~-------l~gr~i~V~~-----a~~~e~~~~~~~~~ 135 (136)
T 2hgl_A 102 KMALKKDRES-------MGHRYIEVFK-----SHRTEMDWVLKHSG 135 (136)
T ss_dssp HHHHTTTEEE-------SSSSEEEEEE-----CCHHHHHHHHTTSC
T ss_pred HHHHhcCCCE-------ECCEEEEEEE-----CChHHHHHHHhhcC
Confidence 8888621111 1346777755 24566666665554
No 258
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=95.68 E-value=0.0072 Score=48.60 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=30.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+. ++++ +.+++++||+||.|. ++|.+++.
T Consensus 22 ~F~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~A~~Ai~ 62 (96)
T 2x1f_A 22 LCSNVGPVINLK-------------------MMFD----PQTGRSKGYAFIEFRDLESSASAVR 62 (96)
T ss_dssp HHHTTSCEEEEE-------------------CCBC----TTTCCBCSEEEEEESSHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EEeC----CCCCccceEEEEEECCHHHHHHHHH
Confidence 699999998866 3344 456889999999996 57777775
No 259
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.68 E-value=0.0066 Score=57.55 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=45.5
Q ss_pred CccccccchH--------HHhhcC--ceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHH
Q 012831 252 PISIASLPML--------YYEKYG--KVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAP 319 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG--~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~ 319 (455)
.+.|.+||.. +|++|| +|+.+. |+++ +.+++++||+||+|. ++|.
T Consensus 70 ~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~-------------------i~~d----~~tg~skGfaFV~f~~~~~a~ 126 (229)
T 3q2s_C 70 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK-------------------FFEN----RANGQSKGFALVGVGSEASSK 126 (229)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTTCCCEEEEE-------------------EEEC----TTTCCEEEEEEEEESCTTHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCcceEEEE-------------------EEec----CCCCccceEEEEEECCHHHHH
Confidence 4566666643 799999 898876 5666 567999999999996 5788
Q ss_pred HHHhhCCCCCCCCCCCCCcceEEEeC
Q 012831 320 KYLENRNERSDPGPIVTGSRQIYLTF 345 (455)
Q Consensus 320 k~~~~r~~r~d~~~~~~~~rkIfVg~ 345 (455)
+++..-... .-..++|.|..
T Consensus 127 ~Ai~~lng~------~~~Gr~l~V~~ 146 (229)
T 3q2s_C 127 KLMDLLPKR------ELHGQNPVVTP 146 (229)
T ss_dssp HHHTTSTTS------CBTTBCCEEEE
T ss_pred HHHHHcCCC------eECCEEeEEEE
Confidence 888732211 12346777765
No 260
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.67 E-value=0.0018 Score=54.17 Aligned_cols=23 Identities=35% Similarity=1.021 Sum_probs=19.3
Q ss_pred CcccccccCcccCCCC-CCccccC
Q 012831 183 VKTCHYFNKGFCKHGS-NCRYYHG 205 (455)
Q Consensus 183 ~kpC~Yf~rG~Ck~G~-sCry~Hg 205 (455)
..+|+||.+|.|++|+ .|+|+|.
T Consensus 20 ~~VCr~FlrG~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 20 LEVCREFQRGNCARGETDCRFAHP 43 (98)
T ss_dssp EEBCSHHHHTCCSSHHHHCSSBCC
T ss_pred hhhhHHHhcCcCCCCCCCCCCcCC
Confidence 4579988889999988 6999986
No 261
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=95.66 E-value=0.0024 Score=52.54 Aligned_cols=24 Identities=25% Similarity=0.886 Sum_probs=21.6
Q ss_pred CCcccccccCcccCCCC-CCccccC
Q 012831 182 PVKTCHYFNKGFCKHGS-NCRYYHG 205 (455)
Q Consensus 182 ~~kpC~Yf~rG~Ck~G~-sCry~Hg 205 (455)
-.-+|++|.||.|+||+ .|+|+|-
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~ 40 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHP 40 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCC
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCC
Confidence 34589999999999998 9999997
No 262
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.66 E-value=0.0028 Score=49.56 Aligned_cols=23 Identities=35% Similarity=0.921 Sum_probs=21.1
Q ss_pred CCcccccccCcccCCCCCCccccC
Q 012831 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 182 ~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
....|++|.+|.|.+| +|+|+|.
T Consensus 41 ~~~vC~~flkG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 41 TVTVCMDYIKGRCSRE-KCKYFHP 63 (70)
T ss_dssp EEEBCHHHHTTCCCCT-TCCSBCC
T ss_pred cceeccccCcCCCCCC-CcCeeCC
Confidence 4668999999999999 9999997
No 263
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.64 E-value=0.0051 Score=52.75 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=34.9
Q ss_pred ccccccchH--------HHhhcCceee--eccccccccccccccccceeeEeeccccccccCCCccceeEEccc-cHHHH
Q 012831 253 ISIASLPML--------YYEKYGKVLQ--AGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAE-DAPKY 321 (455)
Q Consensus 253 ~~i~~lP~~--------yF~kfG~Vl~--~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~e-da~k~ 321 (455)
+.|.+||.. +|++||.|.. +. +++| +.+++++|||||.|.+ +|.++
T Consensus 26 lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~-------------------i~~d----~~tg~~rG~aFV~f~~~~a~~A 82 (131)
T 2m2b_A 26 IILRNLNPHSTMDSILGALAPYAVLSSSNVR-------------------VIKD----KQTQLNRGFAFIQLSTIEAAQL 82 (131)
T ss_dssp EEECSCCTTCCSHHHHHHHGGGCCCCTTTEE-------------------CCBC----SSSSSBCSCEEEECCHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCcceeeEE-------------------EEEc----CCCCCcceEEEEEECCHHHHHH
Confidence 455666543 7999999965 43 4555 5679999999999964 66666
Q ss_pred Hhh
Q 012831 322 LEN 324 (455)
Q Consensus 322 ~~~ 324 (455)
+..
T Consensus 83 i~~ 85 (131)
T 2m2b_A 83 LQI 85 (131)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 264
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.63 E-value=0.0077 Score=48.53 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=30.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 28 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 28 LFSAYGPLSELH-------------------YPID----SLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp HHHTTSCEEEEE-------------------CCCC----TTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCEeEEE-------------------EEec----CCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 699999998865 3333 346889999999996 578888753
No 265
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=95.58 E-value=0.0091 Score=51.40 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=31.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 66 ~F~~~G~I~~v~-------------------i~~d----~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 66 VFSKYGPIADVS-------------------IVYD----QQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp HHTTTSCEEEEE-------------------EECC----SSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEec----CCCCccceEEEEEECCHHHHHHHHHH
Confidence 689999998866 4454 456889999999996 577888763
No 266
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=95.57 E-value=0.0077 Score=49.46 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=43.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCcc
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGSR 339 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~r 339 (455)
.|.+||+|..+. + ..+|||+||.|. ++|.+|+..-.. ..-..+
T Consensus 27 lF~q~G~V~~~~-------------------l----------~~~kGfaFVey~~~~eA~~Ai~~Ln~------~~l~gr 71 (89)
T 2wbr_A 27 LCMQHGPLVSFH-------------------P----------YLNQGIALCKYTTREEANKAQMALNN------CVLANT 71 (89)
T ss_dssp HHHHHSCEEEEE-------------------E----------ETTTTEEEEEESSHHHHHHHHHHHTT------EEETTE
T ss_pred HHHhhCCEEEEE-------------------E----------cCCCcEEEEEECCHHHHHHHHHHhcC------CEECCc
Confidence 499999999865 1 127999999996 577777763211 112467
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhc
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNT 362 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~ 362 (455)
+|.|.. . +|+++..+|.+
T Consensus 72 ~I~V~~-A----~e~~~~~~~~~ 89 (89)
T 2wbr_A 72 TIFAES-P----SENEVQSIMQH 89 (89)
T ss_dssp EEEEEC-C----CHHHHHHHHCC
T ss_pred EEEEEE-C----CHHHHHHHhhC
Confidence 898887 2 88999998863
No 267
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=95.56 E-value=0.009 Score=48.39 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=25.0
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +.++ ++||+||.|. ++|.+++.
T Consensus 20 ~F~~~G~i~~v~-------------------i~~~---------~~g~afV~f~~~~~a~~A~~ 55 (101)
T 2hvz_A 20 AFSYYGPLRTVW-------------------IARN---------PPGFAFVEFEDPRDAEDAVR 55 (101)
T ss_dssp HHHHHCCCSEEE-------------------EESS---------SSSEEEEECSSHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EeeC---------CCCEEEEEECCHHHHHHHHH
Confidence 689999987765 2221 7899999996 56777765
No 268
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.56 E-value=0.008 Score=50.06 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=31.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 37 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 37 YFEGFGDIEEAV-------------------VITD----RQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp HHHTTSCEEEEE-------------------ESCC----SSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred HHHhCCCeeEEE-------------------EEEc----CCCCccceEEEEEECCHHHHHHHHHh
Confidence 699999998866 4444 456889999999996 577788764
No 269
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=95.54 E-value=0.0071 Score=48.92 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=30.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..... . | .....+.++ +.+++++||+||.|. ++|.+++.
T Consensus 33 ~F~~~G~i~~~~~-------~---~-~~~v~i~~~----~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 33 YFKQIGIIKTNKK-------T---G-QPMINLYTD----RETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp HHTTTSCBCEETT-------T---T-EESEEEEEC----TTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred HHHHhCCEeeccc-------c---c-cccEEEEec----CCCCCeeeEEEEEECCHHHHHHHHH
Confidence 7999999876210 0 0 000124454 457899999999996 57777776
No 270
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.54 E-value=0.0083 Score=47.79 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=31.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++|++||.|. ++|.+++..
T Consensus 35 ~f~~~G~v~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 35 VFSKYGPIADVS-------------------IVYD----QQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp HHHTTSCEEEEE-------------------EEEC----SSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCeeEEE-------------------EEEc----CCCCCcccEEEEEECCHHHHHHHHHH
Confidence 799999998865 4555 456889999999996 577788763
No 271
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=95.50 E-value=0.0099 Score=49.33 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=31.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 35 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 35 AFAPFGRISDAR-------------------VVKD----MATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp HHGGGSCEEEEE-------------------EEEC----TTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEEc----CCCCCcceEEEEEECCHHHHHHHHHH
Confidence 699999998866 4555 347889999999996 578888763
No 272
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.50 E-value=0.0078 Score=48.13 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=30.5
Q ss_pred HHhhcCceeee-ccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQA-GGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~-~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+ . +.++ +.+++++||+||.|. ++|.+++.
T Consensus 25 ~F~~~G~i~~~~~-------------------i~~~----~~~g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 25 TFSAFGVILQTPK-------------------IMRD----PDTGNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp HHHTTSCBSSCCE-------------------ECCC----TTTCSCCSEEEEEBSSHHHHHHHHH
T ss_pred HHHhcCCeeEEEE-------------------EEEc----CCCCCcCeEEEEEECCHHHHHHHHH
Confidence 69999998776 4 3444 456889999999996 57888887
No 273
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.48 E-value=0.0071 Score=49.19 Aligned_cols=40 Identities=18% Similarity=0.343 Sum_probs=31.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 35 ~f~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 35 LFRPFGSISRIY-------------------LAKD----KTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp TSTTTCCEEEEE-------------------EEEC----SSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHhCCCeEEEE-------------------Eeec----CCCCceeeEEEEEECCHHHHHHHHHH
Confidence 689999998866 4554 456889999999996 577888773
No 274
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=95.47 E-value=0.0078 Score=50.07 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=31.3
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 45 ~F~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 45 MFMPFGNVVSAK-------------------VFID----KQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp HHGGGSCCSEEE-------------------EEEC----SSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEEC----CCCCCcCccEEEEECCHHHHHHHHHH
Confidence 799999998765 4555 456889999999996 577788753
No 275
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=95.44 E-value=0.0093 Score=49.72 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=31.3
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 60 ~F~~~G~i~~~~-------------------i~~~----~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 60 TFLPFGNVISAK-------------------VFID----KQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp HTTTSCEEEEEE-------------------ECCC----SSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EEeC----CCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 689999998865 4444 456889999999995 678888873
No 276
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=95.43 E-value=0.01 Score=48.91 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=35.4
Q ss_pred ccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHH
Q 012831 253 ISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYL 322 (455)
Q Consensus 253 ~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~ 322 (455)
+.|.+||.. +|++||+|..+. +.++ +.+++++||+||.|. ++|.+++
T Consensus 29 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~A~~Ai 85 (110)
T 1oo0_B 29 LFVTSIHEEAQEDEIQEKFCDYGEIKNIH-------------------LNLD----RRTGFSKGYALVEYETHKQALAAK 85 (110)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEE-------------------CCBC----TTTSSBCSEEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEE-------------------EEec----CCCCCcceEEEEEECCHHHHHHHH
Confidence 456666633 799999998865 3333 456889999999996 5777777
Q ss_pred h
Q 012831 323 E 323 (455)
Q Consensus 323 ~ 323 (455)
.
T Consensus 86 ~ 86 (110)
T 1oo0_B 86 E 86 (110)
T ss_dssp H
T ss_pred H
Confidence 6
No 277
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.40 E-value=0.0061 Score=50.95 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=36.2
Q ss_pred HHhhcCce-eeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCc
Q 012831 262 YYEKYGKV-LQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGS 338 (455)
Q Consensus 262 yF~kfG~V-l~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~ 338 (455)
+|++||.| ..+. ++++ + +++++||+||.|. ++|.+++.. .. . .-..
T Consensus 35 ~F~~~g~v~~~v~-------------------i~~d----~-~g~~~G~afV~F~~~~~a~~Al~~-~~-~-----~~~g 83 (114)
T 2cpy_A 35 FLEGIPVDENAVH-------------------VLVD----N-NGQGLGQALVQFKNEDDARKSERL-HR-K-----KLNG 83 (114)
T ss_dssp HTTTSCCCSTTEE-------------------ECCC----T-TSSCSSCEEEECSSHHHHHHHGGG-CS-E-----EETT
T ss_pred HHHhCCCcCCeEE-------------------EEEC----C-CCCcceEEEEEECCHHHHHHHHHh-CC-C-----ccCC
Confidence 78899987 5444 4444 3 6899999999996 678888874 11 1 1134
Q ss_pred ceEEEeC
Q 012831 339 RQIYLTF 345 (455)
Q Consensus 339 rkIfVg~ 345 (455)
++|.|..
T Consensus 84 r~i~v~~ 90 (114)
T 2cpy_A 84 REAFVHV 90 (114)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 6777765
No 278
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=95.40 E-value=0.0092 Score=50.19 Aligned_cols=50 Identities=8% Similarity=0.175 Sum_probs=38.7
Q ss_pred CCccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHH
Q 012831 251 NPISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPK 320 (455)
Q Consensus 251 ~p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k 320 (455)
..+.|.+||.. +|++||+|..+. +.++ +.+++++||+||.|. ++|.+
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~ 93 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRIT-------------------ILCD----KFSGHPKGYAYIEFAERNSVDA 93 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEE-------------------EEEE----CTTSSCEEEEEEEESSHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE-------------------EEec----CCCCCcccEEEEEECCHHHHHH
Confidence 35678888754 899999998876 4454 457899999999996 57778
Q ss_pred HHh
Q 012831 321 YLE 323 (455)
Q Consensus 321 ~~~ 323 (455)
++.
T Consensus 94 A~~ 96 (124)
T 2jwn_A 94 AVA 96 (124)
T ss_dssp HHT
T ss_pred HHh
Confidence 873
No 279
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.35 E-value=0.013 Score=46.57 Aligned_cols=39 Identities=18% Similarity=0.402 Sum_probs=30.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +.++ +.+++++|++||.|. ++|.+++.
T Consensus 36 ~f~~~G~v~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 36 IFSKYGKVVKVT-------------------IMKD----KDTRKSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp HTTTTSCEEEEE-------------------ECCC----SSSCCCTTCEEEEESCHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEeC----CCCCCcccEEEEEECCHHHHHHHHH
Confidence 689999998865 4444 456889999999996 57788876
No 280
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.35 E-value=0.011 Score=47.87 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ + +++++||+||.|. ++|.+++..
T Consensus 37 ~F~~~G~i~~v~-------------------i~~~----~-~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 37 ICKAHGTVKDLR-------------------LVTN----R-AGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp HHTTTSCEEEEE-------------------EEEC----T-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHhCCCeEEEE-------------------EEEC----C-CCCEEeEEEEEECCHHHHHHHHHH
Confidence 799999998866 4554 3 6889999999996 577788753
No 281
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.34 E-value=0.011 Score=50.43 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=30.9
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++.
T Consensus 83 ~f~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~A~~ 123 (140)
T 2ku7_A 83 AFIPFGDITDIQ-------------------IPLD----YETEKHRGFAFVEFELAEDAAAAID 123 (140)
T ss_dssp HHGGGSCEEEEE-------------------CCCC----TTTCCCCSEEEEEESCHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------Eeec----CCCCCcCcEEEEEECCHHHHHHHHH
Confidence 799999998865 3333 456889999999996 57888886
No 282
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=95.34 E-value=0.0091 Score=46.53 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=30.0
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +.++ +.+++++|++||.|. ++|.+++.
T Consensus 27 ~f~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 27 AFIPFGDITDIQ-------------------IPLD----YETEKHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp HHGGGSCEEEEE-------------------CCEE----TTTTEECSEEEEEESSHHHHHHHHH
T ss_pred HHhccCCEEEEE-------------------EEEC----CCCCccccEEEEEECCHHHHHHHHH
Confidence 689999998865 3333 356788999999996 57778775
No 283
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.33 E-value=0.0078 Score=48.87 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=37.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCcc
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGSR 339 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~r 339 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..-.... -..+
T Consensus 28 ~f~~~G~i~~~~-------------------i~~~----~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~------~~g~ 78 (104)
T 1p1t_A 28 IFSEVGPVVSFR-------------------LVYD----RETGKPKGYGFCEYQDQETALSAMRNLNGRE------FSGR 78 (104)
T ss_dssp HHHTTSCCSEEE-------------------EEEE----TTTTEEEEEEEEECSCHHHHHHHHHHSSSBS------CSSS
T ss_pred HHHhcCCeeEEE-------------------EEeC----CCCCccceEEEEEECCHHHHHHHHHHhCCCe------eCCc
Confidence 789999988765 4454 346889999999996 67888886322211 1345
Q ss_pred eEEEeC
Q 012831 340 QIYLTF 345 (455)
Q Consensus 340 kIfVg~ 345 (455)
+|.|..
T Consensus 79 ~l~v~~ 84 (104)
T 1p1t_A 79 ALRVDN 84 (104)
T ss_dssp CBEEEE
T ss_pred EEEEEe
Confidence 666665
No 284
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.33 E-value=0.0097 Score=52.14 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=31.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 90 ~F~~~G~v~~~~-------------------i~~~----~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 90 VFEKYGRVGDVY-------------------IPRD----RYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp HHHHHSCEEEEE-------------------CCCC----SSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------Eeec----CCCCccceEEEEEECCHHHHHHHHHH
Confidence 699999998876 4444 457899999999996 578888863
No 285
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=95.32 E-value=0.0085 Score=51.45 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=31.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||+|. ++|.+++..
T Consensus 62 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 62 LFERYGPIESVK-------------------IVCD----RETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp HHHHHSCEEEEE-------------------EEEE----TTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEEc----CCCCCcceEEEEEECCHHHHHHHHHH
Confidence 699999998876 4555 456889999999996 577888763
No 286
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.32 E-value=0.0069 Score=49.12 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=30.3
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. ++++ +.+++++||+||.|. ++|.+++.
T Consensus 32 ~f~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2cqb_A 32 AFIPFGDITDIQ-------------------IPLD----YETEKHRGFAFVEFELAEDAAAAID 72 (102)
T ss_dssp HHTTTSCCCCEE-------------------CCCC----SSSCCCSSEEEECCSSHHHHHHHHH
T ss_pred HhhccCCEEEEE-------------------EEec----CCCCCcceEEEEEECCHHHHHHHHH
Confidence 689999998765 3344 456889999999996 57778875
No 287
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.31 E-value=0.013 Score=47.51 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=31.2
Q ss_pred HHhh-cCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEK-YGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~k-fG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++ ||+|..+. +.++ + +++++||+||.|. ++|.+++..
T Consensus 29 ~F~~~~G~v~~v~-------------------i~~~----~-~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 29 FFVKVYPSCRGGK-------------------VVLD----Q-TGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp HHHHHCTTEEEEE-------------------EEEC----T-TCCEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHhCCCeEEEE-------------------EEEC----C-CCCccceEEEEECCHHHHHHHHHH
Confidence 7899 99998876 5555 4 6889999999996 577788763
No 288
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.29 E-value=0.011 Score=47.94 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=30.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 32 ~f~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 32 VFSKYGQISEVV-------------------VVKD----RETQRSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp HHHHHSCCCEEE-------------------ECCC----SSSCSCCSEEEEECSSHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEeC----CCCCCcccEEEEEECCHHHHHHHHHH
Confidence 689999998765 4444 456889999999996 577788753
No 289
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=95.28 E-value=0.011 Score=49.65 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=30.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|..+. +.++ + +++++||+||.|. ++|.+++..
T Consensus 27 ~F~~~G~i~~v~-------------------i~~~----~-~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 27 VFGKHGPISEVL-------------------LIKD----R-TSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp HHHTSSCCSEEE-------------------EECS----T-TTTCCCEEEEECSSHHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EEEC----C-CCCcccEEEEEECCHHHHHHHHHH
Confidence 699999988765 4444 3 6889999999996 578888763
No 290
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.24 E-value=0.01 Score=48.79 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=29.3
Q ss_pred HHhhcCceee-eccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQ-AGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~-~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|.. +. +.++ .+++++||+||.|. ++|.+++..
T Consensus 35 ~F~~~G~v~~~v~-------------------i~~~-----~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 35 FFSGLEIVPNGMT-------------------LPVD-----FQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp HTTTCCEEEEEEE-------------------CCBC-----SSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred HHHhcCCcceeEE-------------------EEEC-----CCCCcceEEEEEECCHHHHHHHHHh
Confidence 7999999876 33 2222 36889999999996 678888874
No 291
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=95.21 E-value=0.013 Score=47.77 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=30.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ + +++++||+||.|. ++|.+++..
T Consensus 35 ~F~~~G~i~~v~-------------------i~~~----~-~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 35 LFQPFGVIDECT-------------------VLRG----P-DGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp HHTTTSCEEEEE-------------------EEEC----S-SSCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEEC----C-CCCcCcEEEEEeCCHHHHHHHHHH
Confidence 799999998866 4554 2 5889999999996 577788763
No 292
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=95.20 E-value=0.0094 Score=49.51 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=31.0
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++.
T Consensus 46 ~F~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 46 IFEPFGRIESIQ-------------------LMMD----SETGRSKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp HHTTTSCEEEEE-------------------EEEE----TTTTEEEEEEEEEESCHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEEc----CCCCccceEEEEEECCHHHHHHHHH
Confidence 799999998866 4454 456889999999996 57778776
No 293
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.14 E-value=0.0094 Score=49.13 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=18.2
Q ss_pred cCCCccceeEEcc--ccHHHHHh
Q 012831 303 IDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 303 tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+++++||+||.|. ++|.+|+.
T Consensus 51 ~g~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 51 DGRVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp SSCEEEEEEEECSSSHHHHHHHT
T ss_pred CCCEeeEEEEEECCHHHHHHHHH
Confidence 6899999999996 67888885
No 294
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.10 E-value=0.0068 Score=51.35 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=29.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+. ++.+ +.+++++||+||.|. ++|.+|+.
T Consensus 45 ~F~~~G~v~~~~-------------------~~~~----~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 45 FFKKLDIVEDSI-------------------YIAY----GPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp HSCSSCBCTTTC-------------------EEEE----CTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred HHHhcCCccceE-------------------EEEE----CCCCCCCeEEEEEECCHHHHHHHHH
Confidence 788999886643 2333 346899999999996 57888887
No 295
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=95.09 E-value=0.015 Score=47.55 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=30.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|..+. +.++ + +++++|++||.|. ++|.+++..
T Consensus 49 ~F~~~G~i~~v~-------------------i~~~----~-~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 49 LFAEFGTLKKAA-------------------VHYD----R-SGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp HHHTTSCEEEEE-------------------EEEC----T-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEEC----C-CCCcceEEEEEECCHHHHHHHHHH
Confidence 699999998866 4555 3 6889999999996 577777763
No 296
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=95.09 E-value=0.014 Score=49.29 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=30.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+. ++++ +.+++++||+||.|. ++|.+++.
T Consensus 42 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 42 KFAEYGEIKNIH-------------------LNLD----RRTGYLKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp HHHTTSCEEEEE-------------------CCBC----TTTSSBCSCEEEEESSHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEec----CCCCccceEEEEEECCHHHHHHHHH
Confidence 799999998865 3344 347889999999996 57777775
No 297
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=95.09 E-value=0.0089 Score=47.69 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=29.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+. ++++ +.+++++||+||.|. ++|.+++.
T Consensus 35 ~F~~~G~i~~~~-------------------~~~~----~~~g~~~g~afV~f~~~~~a~~Ai~ 75 (95)
T 2ek1_A 35 FFYGYQVIPGSV-------------------CLKY----NEKGMPTGEAMVAFESRDEATAAVI 75 (95)
T ss_dssp HTTTSCBCTTCC-------------------EEEE----CTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred HHHhcCCccceE-------------------EEEe----CCCCCEeeEEEEEECCHHHHHHHHH
Confidence 688999887654 3444 456889999999996 57788876
No 298
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=95.09 E-value=0.016 Score=44.32 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=38.2
Q ss_pred HHHHhhhhccCCCchhhhhhhhhcc-cchhHHhhCCchHHHHHHHHHHHHHH
Q 012831 8 RIVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAEL 58 (455)
Q Consensus 8 ~~v~~ri~~~~p~~~~ki~g~ll~~-e~~m~rla~~p~~~~~~~~~~ak~~l 58 (455)
.-+|.+|++++|++|.||.|+||=- -.|++.|=-.| ..|++-|..|-.-|
T Consensus 7 e~Lyp~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~-e~L~~kv~EA~~vl 57 (61)
T 1i2t_A 7 ERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASE-DSLRARVDEAMELI 57 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchhhhhccCCHHHHHHHHcCH-HHHHHHHHHHHHHH
Confidence 4589999999999999999998864 56777775444 45677777776544
No 299
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.08 E-value=0.0046 Score=51.61 Aligned_cols=24 Identities=33% Similarity=0.820 Sum_probs=21.8
Q ss_pred CCCcccccccCcccCCCCCCccccC
Q 012831 181 LPVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 181 ~~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
.....|+||.+|.|.+| +|+|+|.
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred CccccchhhccCCCCCC-CcCccCC
Confidence 35679999999999999 9999997
No 300
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=95.06 E-value=0.024 Score=47.25 Aligned_cols=56 Identities=27% Similarity=0.248 Sum_probs=37.3
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCcc
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGSR 339 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~r 339 (455)
.|++||+|.++. +.++++ .+++++||+||.|. ++|.+|+..-..+. -..|
T Consensus 33 ~f~~~G~V~~v~-------------------i~~~~~---~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~------~~Gr 84 (105)
T 2pe8_A 33 ECEKYGKVGKCV-------------------IFEIPG---APDDEAVRIFLEFERVESAIKAVVDLNGRY------FGGR 84 (105)
T ss_dssp HGGGGSCEEEEE-------------------EEECSS---CCTTTSEEEEEEESSHHHHHHHHHHHTTCE------ETTE
T ss_pred HHHhcCCEEEEE-------------------EecCCC---CCCCCcEEEEEEECCHHHHHHHHHHHCCCE------ECCc
Confidence 489999999876 455421 23689999999996 56777776322221 1346
Q ss_pred eEEEeC
Q 012831 340 QIYLTF 345 (455)
Q Consensus 340 kIfVg~ 345 (455)
+|.|..
T Consensus 85 ~i~v~~ 90 (105)
T 2pe8_A 85 VVKACF 90 (105)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 777766
No 301
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=95.05 E-value=0.014 Score=50.42 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=28.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|+++. + ..+++++|||||.|. ++|.+|+..
T Consensus 53 ~F~~~G~I~~v~-------------------i-------~~~~~~rG~aFV~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 53 LASSQGDILDIV-------------------V-------DLSDDNSGKAYIVFATQESAQAFVEA 91 (127)
T ss_dssp HHHHHSCEEEEE-------------------E-------CCCCSSCCCEEEEESSHHHHHHHHHH
T ss_pred HhccCCCeEEEE-------------------e-------ccCCCcCCEEEEEECCHHHHHHHHHH
Confidence 699999998754 1 124788999999996 578888763
No 302
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=95.00 E-value=0.03 Score=43.48 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=29.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +. +.+++++||+||.|. ++|.+|+..
T Consensus 27 ~F~~~G~i~~v~-------------------i~------~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 27 IFSKFGKITNDF-------------------YP------EEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp HHHTTCCEEEEE-------------------CC------CBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred HHhhcCCeEEEE-------------------ec------CCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 489999998865 11 245789999999996 578888763
No 303
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=94.98 E-value=0.011 Score=46.65 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=30.0
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEccc-cHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAE-DAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~e-da~k~~~~ 324 (455)
+|++||+|..+. +.++ +.+++++||+||.|.+ +|.+++..
T Consensus 21 ~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~a~~a~~~ 61 (90)
T 2ki2_A 21 LFSQFGKVFNVK-------------------LIYD----RETKKPKGFGFVEMQEESVSEAIAK 61 (90)
T ss_dssp THHHHTCCSEEE-------------------ECCC----SSSCCCCEEEEEEECTTHHHHHHHT
T ss_pred HHHhcCCEEEEE-------------------EEEc----CCCCCcceEEEEEECCHHHHHHHHH
Confidence 689999998765 4444 4568999999999952 37777763
No 304
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.96 E-value=0.013 Score=47.05 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=30.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++++ .+.+++++||+||.|. ++|.+++..
T Consensus 25 ~F~~~G~i~~v~-------------------i~~~~~-~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 25 VFSKVGAIKSCT-------------------ISKKKN-KAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp HHHTTSCEEEEE-------------------EEEEEC-TTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEecCC-CCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 799999998866 444411 0125588999999996 577888773
No 305
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.90 E-value=0.01 Score=47.74 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=29.9
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|..+. +.++ +.+++++||+||.|. ++|.+++..
T Consensus 35 ~F~~~G~v~~~~-------------------~~~~----~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 35 FFYGYQVIPGSV-------------------CLKY----NEKGMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp HTTTSCCCTTTC-------------------EEEE----CSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCccceE-------------------EEEE----CCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 688999887644 3333 456889999999996 578888863
No 306
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=94.85 E-value=0.02 Score=45.55 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=29.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +.++ + .++++||+||.|. ++|.+++.
T Consensus 36 ~F~~~G~i~~v~-------------------i~~~----~-~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 36 LFLQAGPLTKVT-------------------ICKD----R-EGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp HHGGGSCEEEEE-------------------EEEC----T-TSCEEEEEEEEESSTHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EEEC----C-CCCCceEEEEEECCHHHHHHHHH
Confidence 799999998865 4444 2 2788999999995 67788876
No 307
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=94.84 E-value=0.017 Score=46.24 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=28.2
Q ss_pred CccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEccc--cHH
Q 012831 252 PISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAE--DAP 319 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~e--da~ 319 (455)
.+.|.+||.. +|++||+|.++. ++ .+++|||||+|.+ +|.
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~-------------------i~---------~~srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQYGEVVDVF-------------------IP---------KPFRAFAFVTFADDKVAQ 62 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------------------CC---------SSCCSEEEEEESCHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEEEEE-------------------Ee---------eCCCCEEEEEECCHHHHH
Confidence 3455666644 899999998875 11 2389999999974 454
No 308
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.84 E-value=0.016 Score=47.40 Aligned_cols=40 Identities=15% Similarity=-0.052 Sum_probs=30.2
Q ss_pred HHhhcCc-eeeeccccccccccccccccceeeEe-eccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGK-VLQAGGYLTESQRHGKAGYSLTKLLA-RLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~-Vl~~~~~~~~sqr~g~~Gy~l~~~v~-rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||. |..+. +. ++ +.+++++||+||.|. ++|.+++..
T Consensus 28 ~f~~~G~~v~~v~-------------------i~~~~----~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 28 EIAKVTEGVLDVI-------------------VYASA----ADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp HHHHHSTTEEEEE-------------------CCSSS----CTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred HHHHhcCCceEEE-------------------EEccC----CCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 6899998 88765 22 23 456889999999996 577788763
No 309
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=94.83 E-value=0.019 Score=50.32 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=37.6
Q ss_pred CccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHH
Q 012831 252 PISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKY 321 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~ 321 (455)
.+.|.+||.. +|++||+|..+. +.++ +.+++++||+||+|. ++|.++
T Consensus 41 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~-------------------i~~~----~~~~~~~g~afV~f~~~~~A~~A 97 (156)
T 1h2v_Z 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKII-------------------MGLD----KMKKTACGFCFVEYYSRADAENA 97 (156)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEE-------------------EEEC----TTTCCEEEEEEEEESSHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------------------EEec----CCCCccceEEEEEECCHHHHHHH
Confidence 3566666643 799999998876 4555 456889999999996 578888
Q ss_pred Hhh
Q 012831 322 LEN 324 (455)
Q Consensus 322 ~~~ 324 (455)
+..
T Consensus 98 i~~ 100 (156)
T 1h2v_Z 98 MRY 100 (156)
T ss_dssp HHH
T ss_pred HHH
Confidence 773
No 310
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=94.82 E-value=0.012 Score=47.77 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=35.4
Q ss_pred CCccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeecccccc-ccCCCccceeEEcc--ccHH
Q 012831 251 NPISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVR-LIDRPHGQHAVILA--EDAP 319 (455)
Q Consensus 251 ~p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r-~tgrsrG~gfV~f~--eda~ 319 (455)
..+.|.+||.. +|++|| |..+. +.++ + .+++++||+||.|. ++|.
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~-------------------i~~~----~~~~g~~~g~afV~f~~~~~a~ 75 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVR-------------------LPRE----PSNPERLKGFGYAEFEDLDSLL 75 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEE-------------------CSCC----TTTTCCCCSCEEEEECCHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE-------------------EEec----CCcCCccCeEEEEEECCHHHHH
Confidence 34567777743 789999 87765 3333 2 46889999999996 5778
Q ss_pred HHHh
Q 012831 320 KYLE 323 (455)
Q Consensus 320 k~~~ 323 (455)
+++.
T Consensus 76 ~Ai~ 79 (100)
T 2j76_E 76 SALS 79 (100)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8884
No 311
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.81 E-value=0.0097 Score=49.69 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=17.4
Q ss_pred CCCccceeEEcc--ccHHHHHhh
Q 012831 304 DRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 304 grsrG~gfV~f~--eda~k~~~~ 324 (455)
++++||+||+|. ++|.+|+..
T Consensus 49 g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 49 FPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp SCTTSEEEECCSSHHHHHHHHHH
T ss_pred CCcccEEEEEECCHHHHHHHHHh
Confidence 789999999996 577788764
No 312
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=94.78 E-value=0.019 Score=51.04 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=36.6
Q ss_pred ccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHH
Q 012831 253 ISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYL 322 (455)
Q Consensus 253 ~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~ 322 (455)
+.|.+||.. +|++||.|..+. +.++ +.+++++||+||.|. ++|.+++
T Consensus 75 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~A~~Ai 131 (165)
T 1rk8_A 75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIH-------------------LNLD----RRTGFSKGYALVEYETHKQALAAK 131 (165)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEE-------------------EEEC----TTTSSEEEEEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHhhcCCCEEEEE-------------------EEec----CCCCcEeeEEEEEECCHHHHHHHH
Confidence 566666643 799999998876 4454 457889999999996 5777777
Q ss_pred h
Q 012831 323 E 323 (455)
Q Consensus 323 ~ 323 (455)
.
T Consensus 132 ~ 132 (165)
T 1rk8_A 132 E 132 (165)
T ss_dssp H
T ss_pred H
Confidence 6
No 313
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.76 E-value=0.015 Score=47.35 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=28.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeecccccccc-CCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLI-DRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~t-grsrG~gfV~f~--eda~k~~~ 323 (455)
+|++|| |..+. ++++ +.+ ++++||+||.|. ++|.+++.
T Consensus 35 ~F~~~G-i~~v~-------------------i~~~----~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (104)
T 1wi8_A 35 FFRGLN-ISAVR-------------------LPRE----PSNPERLKGFGYAEFEDLDSLLSALS 75 (104)
T ss_dssp HTTTSC-EEEEE-------------------CCBC----SSCTTSBCSCEEEEESSHHHHHHHHG
T ss_pred HHHHCC-ceEEE-------------------EecC----CCCCCCcCeEEEEEECCHHHHHHHHh
Confidence 789999 87765 3344 344 889999999996 57788874
No 314
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.75 E-value=0.016 Score=47.93 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=30.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ + +++++||+||.|. ++|.+++..
T Consensus 45 ~F~~~G~i~~~~-------------------i~~~----~-~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 45 MLKPFGQVISTR-------------------ILRD----S-SGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp TTTTTSCEEEEE-------------------EEEC----S-SSCEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EEEC----C-CCCcceEEEEEECCHHHHHHHHHH
Confidence 689999998865 4555 3 6889999999996 577777763
No 315
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=94.72 E-value=0.018 Score=48.52 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=29.9
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +.++ + +++++||+||.|. ++|.+++.
T Consensus 55 ~F~~~G~v~~v~-------------------i~~~----~-~g~~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 55 LFAEFGTLKKAA-------------------VDYD----R-SGRSLGTADVHFERRADALKAMK 94 (124)
T ss_dssp HHHTTSCCSEEE-------------------EECC----S-SSSCCSEEEEEESSHHHHHHHHH
T ss_pred HHHhcCCeeEEE-------------------EEEC----C-CCCEeeEEEEEECCHHHHHHHHH
Confidence 689999998765 4444 3 6889999999996 57778776
No 316
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.69 E-value=0.016 Score=47.87 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.0
Q ss_pred cccCCCccceeEEcc--ccHHHHHh
Q 012831 301 RLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 301 r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+.+++++||+||.|. ++|.+++.
T Consensus 59 ~~~g~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 59 KETGKPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp TTTCSBCSEEEEEBSSHHHHHHHHH
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHH
Confidence 457899999999996 57888876
No 317
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.66 E-value=0.021 Score=60.02 Aligned_cols=56 Identities=13% Similarity=0.382 Sum_probs=42.5
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHh
Q 012831 338 SRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAK 396 (455)
Q Consensus 338 ~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ 396 (455)
.|.|||.. +...++.+|.+||++||+|.++.+-.+ ..-||.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~~--~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIHC--PEKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEEE--CCC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEEc--CCCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHHhc
Confidence 57899986 688999999999999999999977553 345999999999999988765
No 318
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=94.61 E-value=0.036 Score=45.96 Aligned_cols=39 Identities=33% Similarity=0.337 Sum_probs=29.5
Q ss_pred HH-hhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YY-EKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF-~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
.| ++||+|..+. +.++ ..++++||+||.|. ++|.+|+..
T Consensus 46 ~f~~~~G~V~~v~-------------------i~~~-----~~~~~~G~~fV~f~~~~~A~~A~~~ 87 (104)
T 1jmt_A 46 EMEEKYGEVEEMN-------------------VCDN-----LGDHLVGNVYVKFRREEDAEKAVID 87 (104)
T ss_dssp HHHHHTCCEEEEE-------------------ECCS-----SSSSSEEEEEEEESCHHHHHHHHHH
T ss_pred HhhccCCceEEEE-------------------EEeC-----CCCCccEEEEEEECCHHHHHHHHHH
Confidence 57 9999999876 4444 23689999999996 577777763
No 319
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.61 E-value=0.02 Score=46.56 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=29.2
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++|| |..+. ++++ +.+++++||+||.|. ++|.+++.
T Consensus 35 ~F~~~g-i~~v~-------------------i~~~----~~~g~~~g~afV~f~~~~~a~~A~~ 74 (103)
T 2dng_A 35 IFKDLS-IRSVR-------------------LVRD----KDTDKFKGFCYVEFDEVDSLKEALT 74 (103)
T ss_dssp HTTTSC-EEEEE-------------------EEEC----SSSCSEEEEEEEEESSHHHHHHHGG
T ss_pred HHHhCC-ceEEE-------------------Eeec----CCCCccceEEEEEECCHHHHHHHHh
Confidence 688886 77765 5555 457899999999996 57778874
No 320
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.58 E-value=0.019 Score=47.63 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=27.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|.++. +.++++||+||+|. ++|.+++..
T Consensus 37 ~F~~~G~V~~v~----------------------------i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 37 LLQKYGEVLNLV----------------------------LSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp HHHTTSCEEEEE----------------------------EESSSSSEEEEEESCHHHHHHHHHT
T ss_pred HHHhcCCEEEEE----------------------------EccCCCCEEEEEECCHHHHHHHHHh
Confidence 599999998865 22478999999996 578888874
No 321
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.57 E-value=0.021 Score=48.00 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=25.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|.++. +++ .+|||||.|. ++|.+++.
T Consensus 36 lF~~fG~V~~v~-------------------i~~----------~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 36 LGLPFGKVTNLL-------------------MLK----------GKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp HHHHHCCEEEEE-------------------EET----------TTTEEEEEESSHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EEc----------CCCEEEEEECCHHHHHHHHH
Confidence 699999998876 222 2799999996 57778876
No 322
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=94.56 E-value=0.043 Score=44.95 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=29.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|..+. +. +.+++++|||||.|. ++|.+|+..
T Consensus 41 ~F~~~G~v~~v~-------------------i~------~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 41 IFSKFGKITNDF-------------------YP------EEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp HHGGGSCEEEEE-------------------CC------CBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred HHhcCCCEEEEE-------------------ee------CCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 489999998865 11 245789999999996 678888874
No 323
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.49 E-value=0.026 Score=45.94 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=30.3
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|..+. +.++ .+.+++++||+||.|. ++|.+++..
T Consensus 35 ~F~~~G~i~~v~-------------------i~~~---~~~~~~~~g~afV~f~~~~~a~~A~~~ 77 (107)
T 2cph_A 35 LFSTFGELKTVR-------------------LPKK---MTGTGAHRGFGFVDFITKQDAKKAFNA 77 (107)
T ss_dssp HHHTTSCEEEEE-------------------CCCC---CSSSCSSCSEEEEEESSHHHHHHHHHH
T ss_pred HHHccCCeEEEE-------------------EecC---CCCCCCcCceEEEEECCHHHHHHHHHH
Confidence 799999998876 2222 0246889999999996 577788764
No 324
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=94.48 E-value=0.029 Score=47.87 Aligned_cols=59 Identities=15% Similarity=0.069 Sum_probs=37.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCcc
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGSR 339 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~r 339 (455)
.|++||+|..+. +.++..+...+++++|++||.|. ++|.+|+..-..+. -..|
T Consensus 45 ef~k~G~V~~v~-------------------I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~------f~GR 99 (118)
T 3ue2_A 45 ECGKFGAVNRVI-------------------IYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW------FAGR 99 (118)
T ss_dssp HHTTTSCEEEEE-------------------EEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE------ETTE
T ss_pred HHhccCCEeEEE-------------------EeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE------ECCc
Confidence 488999999876 44442221235678899999996 57777776422221 1356
Q ss_pred eEEEeC
Q 012831 340 QIYLTF 345 (455)
Q Consensus 340 kIfVg~ 345 (455)
+|.|..
T Consensus 100 ~i~v~~ 105 (118)
T 3ue2_A 100 KVVAEV 105 (118)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 676665
No 325
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.42 E-value=0.0098 Score=48.17 Aligned_cols=23 Identities=39% Similarity=0.753 Sum_probs=21.3
Q ss_pred CCcccccccCcccCCCCCCccccC
Q 012831 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 182 ~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
.+..|.+|.||.|.|| +|+|+|.
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCC
T ss_pred ceeehhHhhhccccCC-CcceeCC
Confidence 4678999999999998 9999997
No 326
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=94.41 E-value=0.022 Score=49.32 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=34.3
Q ss_pred CccccccchH--------HHhhcCcee--eeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHH
Q 012831 252 PISIASLPML--------YYEKYGKVL--QAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAP 319 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG~Vl--~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~ 319 (455)
.+.|.+||+. +|++| .|+ .+. ++++ +. ++++|||||.|. ++|.
T Consensus 44 ~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~-------------------i~~d----~~-GrsrGfaFV~F~~~e~A~ 98 (126)
T 2hgm_A 44 FVRLRGLPFGCTKEEIVQFFSGL-EIVPNGIT-------------------LPVD----PE-GKITGEAFVQFASQELAE 98 (126)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTS-CEEEEEEE-------------------CCCC----SS-SSSCSEEEEEESSTTHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhcC-CceeeEEE-------------------EEEC----CC-CCCceEEEEEECCHHHHH
Confidence 4567777754 78889 566 443 3444 23 899999999995 6888
Q ss_pred HHHhh
Q 012831 320 KYLEN 324 (455)
Q Consensus 320 k~~~~ 324 (455)
+|+..
T Consensus 99 ~Al~~ 103 (126)
T 2hgm_A 99 KALGK 103 (126)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 88874
No 327
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=94.39 E-value=0.024 Score=49.76 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=34.3
Q ss_pred CCccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHH
Q 012831 251 NPISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPK 320 (455)
Q Consensus 251 ~p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k 320 (455)
..+.|.+||+. +|++|| ++.+. ++++ +. ++++||+||+|. ++|.+
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~-------------------i~~d----~~-g~srGfaFV~F~~~e~A~~ 101 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLN-PVRVH-------------------IEIG----PD-GRVTGEADVEFATHEEAVA 101 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCC-CSEEE-------------------CCCS----SS-SCSSCCCEEECSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE-------------------EEEC----CC-CCCceEEEEEeCCHHHHHH
Confidence 34566677754 799999 65554 3444 22 889999999996 67888
Q ss_pred HHh
Q 012831 321 YLE 323 (455)
Q Consensus 321 ~~~ 323 (455)
++.
T Consensus 102 Al~ 104 (139)
T 2hgn_A 102 AMS 104 (139)
T ss_dssp HTT
T ss_pred HHh
Confidence 884
No 328
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.38 E-value=0.017 Score=48.73 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=33.3
Q ss_pred ccccccchH--------HHhhcCc---eeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHH
Q 012831 253 ISIASLPML--------YYEKYGK---VLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAP 319 (455)
Q Consensus 253 ~~i~~lP~~--------yF~kfG~---Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~ 319 (455)
+.|.+||.. +|++||. |..+. +.++ +. ++++||+||.|. ++|.
T Consensus 20 l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~-------------------i~~~----~~-g~~~G~afV~F~~~~~a~ 75 (118)
T 2db1_A 20 VKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVH-------------------FIYT----RE-GRQSGEAFVELESEDDVK 75 (118)
T ss_dssp EEEESCCTTCCHHHHHHHTTTSCBTTGGGGEE-------------------EEEC----SS-SCEEEEEEEEBSSHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCccCceeEE-------------------EEEC----CC-CCCCeEEEEEECCHHHHH
Confidence 455666643 7889998 55543 4444 22 889999999996 5788
Q ss_pred HHHh
Q 012831 320 KYLE 323 (455)
Q Consensus 320 k~~~ 323 (455)
+++.
T Consensus 76 ~Al~ 79 (118)
T 2db1_A 76 LALK 79 (118)
T ss_dssp HHGG
T ss_pred HHHh
Confidence 8887
No 329
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.35 E-value=0.019 Score=48.17 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=34.1
Q ss_pred CccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHH
Q 012831 252 PISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKY 321 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~ 321 (455)
.+.|.+||+. +|++| +|.++. ++++ + .++++|||||.|. ++|.+|
T Consensus 18 ~v~V~nLp~~~te~dl~~~F~~~-~v~~v~-------------------i~~d----~-~g~~~G~afV~F~~~~~a~~A 72 (109)
T 2dnn_A 18 YVSVHGMPFSAMENDVRDFFHGL-RVDAVH-------------------LLKD----H-VGRNNGNGLVKFLSPQDTFEA 72 (109)
T ss_dssp EEEEECCCSSCCHHHHHHHTTTS-CCCEEE-------------------ECCC----T-TCCCCSEEEEECSSHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHhccC-CeeEEE-------------------EEEC----C-CCCCCeEEEEEECCHHHHHHH
Confidence 3566777754 78888 776654 4444 2 3899999999996 688888
Q ss_pred Hh
Q 012831 322 LE 323 (455)
Q Consensus 322 ~~ 323 (455)
+.
T Consensus 73 l~ 74 (109)
T 2dnn_A 73 LK 74 (109)
T ss_dssp HH
T ss_pred Hh
Confidence 85
No 330
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.34 E-value=0.028 Score=46.40 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=29.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +.++ + +++++||+||.|. ++|.+++.
T Consensus 35 ~f~~~G~i~~~~-------------------i~~~----~-~g~~~g~afV~f~~~~~a~~A~~ 74 (114)
T 2do0_A 35 VFSMAGVVVRAD-------------------ILED----K-DGKSRGIGTVTFEQSIEAVQAIS 74 (114)
T ss_dssp HHTTTSCEEEEE-------------------EEEC----T-TCSEEEEEEEEESSHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEEC----C-CCCeeeEEEEEECCHHHHHHHHH
Confidence 689999998865 4444 2 3788999999996 57778776
No 331
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=94.34 E-value=0.023 Score=49.13 Aligned_cols=39 Identities=28% Similarity=0.408 Sum_probs=30.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +.++ +.+++++||+||.|. ++|.+++.
T Consensus 67 ~F~~~G~i~~v~-------------------i~~~----~~~g~~~G~afV~F~~~~~A~~Ai~ 107 (135)
T 2lea_A 67 VFEKYGRVGDVY-------------------IPRD----RYTKESRGFAFVRFHDKRDAEDAMD 107 (135)
T ss_dssp HHGGGSCCSEEE-------------------CCCC----SSSSSCCSCCEEECSCHHHHHHHHT
T ss_pred HHHhcCCEEEEE-------------------EEec----CCCCccceEEEEEECCHHHHHHHHH
Confidence 799999998765 3333 356889999999996 57788876
No 332
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.31 E-value=0.026 Score=41.14 Aligned_cols=26 Identities=27% Similarity=0.724 Sum_probs=23.2
Q ss_pred CCCCcccc-cccCcccCCCCCCccccC
Q 012831 180 ELPVKTCH-YFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 180 ~~~~kpC~-Yf~rG~Ck~G~sCry~Hg 205 (455)
+....+|. |-+-|+|.+|..|++.|-
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHD 43 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHD 43 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred ccccchhhhccccccCCCCCCCCcccc
Confidence 45678999 889999999999999996
No 333
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=94.31 E-value=0.032 Score=44.10 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=28.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +++++||+||.|. ++|.+++..
T Consensus 28 ~f~~~G~v~~~~-------------------i~~~------~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 28 KFNECGHVLYAD-------------------IKME------NGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp HHHTTSCEEEEE-------------------EEES------SSCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EEcc------CCCcceEEEEEECCHHHHHHHHHH
Confidence 689999998765 2222 5788999999996 577777763
No 334
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=94.15 E-value=0.016 Score=47.75 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.5
Q ss_pred CCCccceeEEcc--ccHHHHHh
Q 012831 304 DRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 304 grsrG~gfV~f~--eda~k~~~ 323 (455)
++++||+||.|. ++|.+++.
T Consensus 52 g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 52 GKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp STTCSEEEEEBSSHHHHHHHHT
T ss_pred CCEeeEEEEEECCHHHHHHHHH
Confidence 889999999996 57888887
No 335
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=94.13 E-value=0.035 Score=57.69 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=31.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|..+. |+.+ +.+++++|||||+|. ++|.+|+..
T Consensus 122 ~F~~~G~I~~v~-------------------i~~d----~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 122 EFEVYGPIKRIH-------------------MVYS----KRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred HHHHcCCeeEEE-------------------eecc----CCCCCccceEEEeeccHHHHHHHHHH
Confidence 799999998876 4444 457899999999996 577788763
No 336
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.11 E-value=0.011 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.869 Sum_probs=20.2
Q ss_pred CcccccccC-cccCCCCCCccccC
Q 012831 183 VKTCHYFNK-GFCKHGSNCRYYHG 205 (455)
Q Consensus 183 ~kpC~Yf~r-G~Ck~G~sCry~Hg 205 (455)
..+|+||.+ |.|. |..|+|.|.
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~ 60 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHI 60 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCC
T ss_pred CCCCcccCCCCccC-CCCeeccCC
Confidence 458999999 9999 899999998
No 337
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=94.10 E-value=0.06 Score=44.72 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=29.6
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
.|++||+|.++. +.++.. ..+++++|++||.|. ++|.+|+..
T Consensus 35 ~f~k~G~V~~v~-------------------i~~~~~--~~~~~~~G~~fV~f~~~~~A~~Ai~~ 78 (105)
T 3v4m_A 35 ECSKYGLVKSIE-------------------IPRPVD--GVEVPGCGKIFVEFTSVFDCQKAMQG 78 (105)
T ss_dssp HHHTTSCEEEEE-------------------CCCCBT--TBCCTTTTEEEEEESSHHHHHHHHHH
T ss_pred HHHccCCEEEEE-------------------EeccCC--CCCcCCcEEEEEEECCHHHHHHHHHH
Confidence 489999999876 333311 123578999999996 577777763
No 338
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=94.06 E-value=0.03 Score=45.55 Aligned_cols=50 Identities=24% Similarity=0.371 Sum_probs=38.1
Q ss_pred HHHHhhhhccCCCchhhhhhhhhcc-cchhHHhhCCchHHHHHHHHHHHHHH
Q 012831 8 RIVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAEL 58 (455)
Q Consensus 8 ~~v~~ri~~~~p~~~~ki~g~ll~~-e~~m~rla~~p~~~~~~~~~~ak~~l 58 (455)
.-+|.+|++++||.|.||.|+||=- -.|++.|=- .+.+|++-|..|-.-|
T Consensus 29 E~LyplV~~~~p~~AgKITGMLLEmd~~ElL~Lle-~~e~L~~kV~EA~~vL 79 (85)
T 1nmr_A 29 ERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLD-TPGLLDAKVQEALEVL 79 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCC-THHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccchhhHhHhcCCHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 4589999999999999999998865 566776644 4556677777775544
No 339
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=94.02 E-value=0.026 Score=47.61 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=33.9
Q ss_pred CCccccccchH--------HHhhcC-ceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHH
Q 012831 251 NPISIASLPML--------YYEKYG-KVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAP 319 (455)
Q Consensus 251 ~p~~i~~lP~~--------yF~kfG-~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~ 319 (455)
..+.|.+||.. +|++|| +|..+. + ..++++|||||.|. ++|.
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~-------------------i--------~~~~~rGfaFV~F~~~e~A~ 81 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENSLETTFSS-------------------V--------NTRDFDGTGALEFPSEEILV 81 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEE-------------------C--------SSCSSSCCEEEEESSHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEE-------------------E--------EcCCCCCEEEEEECCHHHHH
Confidence 34667777754 899999 787754 1 12458999999996 6788
Q ss_pred HHHhh
Q 012831 320 KYLEN 324 (455)
Q Consensus 320 k~~~~ 324 (455)
+|+..
T Consensus 82 ~Ai~~ 86 (111)
T 2jvr_A 82 EALER 86 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88863
No 340
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=94.02 E-value=0.023 Score=44.33 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=28.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCC-CccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDR-PHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgr-srG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+. +.++ +.+++ ++|++||.|. ++|.+++.
T Consensus 24 ~F~~~G~i~~~~-------------------i~~~----~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (88)
T 4a8x_A 24 IFSTYGKIKMID-------------------MPVE----RMHPHLSKGYAYVEFENPDEAEKALK 65 (88)
T ss_dssp HHHTTSCEEEEE-------------------CCEE----TTEEEEECSEEEEEESSHHHHHHHHH
T ss_pred HHHhCCCEEEEE-------------------EEeC----CCCCCCCCcEEEEEEecHHHHHHHHH
Confidence 799999998865 2333 22233 7899999996 57777776
No 341
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=93.98 E-value=0.033 Score=45.31 Aligned_cols=50 Identities=28% Similarity=0.479 Sum_probs=38.4
Q ss_pred HHHHhhhhccCCCchhhhhhhhhcc-cchhHHhhCCchHHHHHHHHHHHHHH
Q 012831 8 RIVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAEL 58 (455)
Q Consensus 8 ~~v~~ri~~~~p~~~~ki~g~ll~~-e~~m~rla~~p~~~~~~~~~~ak~~l 58 (455)
.-+|.+|++++||+|.||.|+||=- ..|++.|=-.|| .|++-|..|-.-|
T Consensus 28 E~LyplV~~~~p~~AgKITGMLLEmd~~Ell~Lles~e-~L~~kv~EA~~vL 78 (85)
T 2dyd_A 28 ENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPD-ALKAKVAEAMEVL 78 (85)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHCHHHHHHHTTCSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccchhhhhhhcCCHHHHHHHHcCHH-HHHHHHHHHHHHH
Confidence 4589999999999999999998864 677887765555 4566666665544
No 342
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.96 E-value=0.042 Score=45.08 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=27.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +. .+++++||+||.|. ++|.+++.
T Consensus 42 ~F~~~G~v~~~~-------------------i~-------~~~~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 42 VFYKYGAIRDID-------------------LK-------NRRGGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp HHGGGSCEEEEE-------------------EC-------CSSSSSCCEEEEESCHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EE-------ECCCCCcEEEEEECCHHHHHHHHH
Confidence 799999998865 21 23568999999996 57788875
No 343
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=93.84 E-value=0.012 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.844 Sum_probs=20.9
Q ss_pred CCcccccccC-cccCCCCCCccccC
Q 012831 182 PVKTCHYFNK-GFCKHGSNCRYYHG 205 (455)
Q Consensus 182 ~~kpC~Yf~r-G~Ck~G~sCry~Hg 205 (455)
...+|+||.+ |.|.+ ..|+|.|.
T Consensus 43 ~~~~C~~f~~~G~C~~-~~C~y~H~ 66 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-KECPFLHI 66 (72)
T ss_dssp SCCBCHHHHHHSCCSB-TTCCSBCC
T ss_pred cCCcccccCCCCCCCC-CCeeccCC
Confidence 3568999999 99999 99999997
No 344
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.82 E-value=0.2 Score=41.77 Aligned_cols=55 Identities=11% Similarity=0.251 Sum_probs=44.5
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhc
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKG 397 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~l 397 (455)
..+-++| . .|.++...||.++|+.|| -..|+.+-|. -|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~-FP~ewKt~DI~~lFs~fg-gv~I~WidDT---sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-T-FPKEWKTSDLYQLFSAFG-NIQISWIDDT---SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-E-CCTTCCHHHHHHHHTTTC-SCCCEEEETT---EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-e-CChhhhhHHHHHHhhccC-CEEEEEEcCC---eEEEEecCHHHHHHHHHhc
Confidence 4455666 5 589999999999999999 4556666654 5999999999999999864
No 345
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.82 E-value=0.031 Score=46.25 Aligned_cols=47 Identities=19% Similarity=0.372 Sum_probs=32.8
Q ss_pred ccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHH
Q 012831 253 ISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYL 322 (455)
Q Consensus 253 ~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~ 322 (455)
+.|.+||.. +|++||+|..+. +.++ .++++||+||.|. ++|.+++
T Consensus 32 l~V~nLp~~~te~~l~~~F~~~G~i~~v~-------------------i~~~------~~~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 32 LHVSNIPFRFRDPDLRQMFGQFGKILDVE-------------------IIFN------ERGSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp EEEESCCTTCCHHHHHHHGGGTCCCSCEE-------------------ECCB------TTBCTTEEEEECCCSHHHHHHH
T ss_pred EEEECCCCcCCHHHHHHHHHhcCCEEEEE-------------------EEEC------CCCCceEEEEEECCHHHHHHHH
Confidence 455555533 799999998765 3333 1348999999996 5777887
Q ss_pred hh
Q 012831 323 EN 324 (455)
Q Consensus 323 ~~ 324 (455)
..
T Consensus 87 ~~ 88 (109)
T 2err_A 87 EK 88 (109)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 346
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=93.65 E-value=0.057 Score=44.15 Aligned_cols=52 Identities=31% Similarity=0.362 Sum_probs=40.8
Q ss_pred HHHhhhhccCCCchhhhhhhhhcc-cchhHHhhCCchHHHHHHHHHHHHHHHhh
Q 012831 9 IVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAELQQL 61 (455)
Q Consensus 9 ~v~~ri~~~~p~~~~ki~g~ll~~-e~~m~rla~~p~~~~~~~~~~ak~~l~~~ 61 (455)
-+|.+|++++|+.|.||.|+||=- -.|++.|==. +..|++-|..|-.-|...
T Consensus 27 ~Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~-~e~L~~kV~EA~~vL~~~ 79 (88)
T 3kuj_A 27 RLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLES-PESLRSKVDEAVAVLQAH 79 (88)
T ss_dssp HHHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHC-HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcC-HHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999865 6667766333 566788888887766553
No 347
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=93.64 E-value=0.04 Score=50.63 Aligned_cols=49 Identities=29% Similarity=0.449 Sum_probs=37.5
Q ss_pred CccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHH
Q 012831 252 PISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKY 321 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~ 321 (455)
.+.|.+||.. +|++||+|..+. +.++ .+++++||+||+|. ++|.+|
T Consensus 111 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-------------------i~~~-----~~~~~kG~aFVeF~~~e~A~~A 166 (193)
T 2voo_A 111 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQ-------------------MRRT-----LHKAFKGSIFVVFDSIESAKKF 166 (193)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSCCEEEEE-------------------EEEC-----TTCCEEEEEEEEESSHHHHHHH
T ss_pred EEEecCCCCcCCHHHHHHHHhcCCCEEEEE-------------------EEEC-----CCCCcccEEEEEECCHHHHHHH
Confidence 4677888854 899999998876 4444 23788999999996 578888
Q ss_pred Hhh
Q 012831 322 LEN 324 (455)
Q Consensus 322 ~~~ 324 (455)
+..
T Consensus 167 ~~~ 169 (193)
T 2voo_A 167 VET 169 (193)
T ss_dssp HHC
T ss_pred HHh
Confidence 863
No 348
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.62 E-value=0.054 Score=43.81 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=27.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +.++ .+.++||+||.|. ++|.+++.
T Consensus 35 ~F~~~G~i~~v~-------------------i~~~------~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 35 LFSQIGPCKSCK-------------------MITE------HTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp HHHHHSCEEEEE-------------------EECC------CCSSCCEEEEEESSHHHHHHHHH
T ss_pred HHHhcCCEeEEE-------------------EEec------CCCCCCEEEEEECCHHHHHHHHH
Confidence 799999998866 4444 1336899999996 57778876
No 349
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=93.60 E-value=0.013 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.098 Sum_probs=18.2
Q ss_pred ccCCCccceeEEcc--ccHHHHHh
Q 012831 302 LIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 302 ~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
.+++++||+||.|. ++|.+++.
T Consensus 53 ~~g~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 53 RTGTNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp EEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCcCcEEEEEECCHHHHHHHHh
Confidence 45789999999996 57888886
No 350
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.55 E-value=0.06 Score=43.55 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=28.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +++++ +.++||+||.|. ++|.+++.
T Consensus 35 ~f~~~G~v~~v~-------------------i~~~~------~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cq3_A 35 MFGQFGKILDVE-------------------IIFNE------RGSKGFGFVTFENSADADRARE 73 (103)
T ss_dssp HGGGTSCEEEEE-------------------EECCT------TTTCCEEEEEESCHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEecC------CCCcEEEEEEECCHHHHHHHHH
Confidence 799999998866 44441 248999999996 57778876
No 351
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.53 E-value=0.045 Score=44.32 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ +++++||+||.|. ++|.+++..
T Consensus 35 ~F~~~G~i~~v~-------------------i~~~------~g~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 35 AFSPFGTITSAK-------------------VMME------GGRSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp TTTTTSCEEEEE-------------------EEEC------SSSEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EEcC------CCCcCEEEEEEECCHHHHHHHHHH
Confidence 689999998765 2332 5788999999996 577788763
No 352
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.41 E-value=0.037 Score=46.03 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=25.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
.|++||+|..+. +++ .+|||||.|. ++|.+++.
T Consensus 36 lF~~fG~V~~v~-------------------i~~----------~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 36 LVEPFGVISNHL-------------------ILN----------KINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp TTGGGSCEEEEE-------------------ECS----------SSSCEEEEESSHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EEc----------CCCEEEEEECCHHHHHHHHH
Confidence 799999999875 222 3589999996 56777765
No 353
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.37 E-value=0.054 Score=44.82 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=36.8
Q ss_pred HHHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCc
Q 012831 261 LYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGS 338 (455)
Q Consensus 261 ~yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~ 338 (455)
.+|++||+|..+. +.+++.+ ...++++||+||+|. ++|.+|+..-.... -..
T Consensus 37 ~~F~~~G~i~~v~-------------------i~~~~~~-~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~------~~g 90 (111)
T 2cpi_A 37 EYFGKFGKIHKVV-------------------INNSTSY-AGSQGPSASAYVTYIRSEDALRAIQCVNNVV------VDG 90 (111)
T ss_dssp TTTTTTSCEEEEE-------------------EECCSSC-CSSSCCCEEEEEEESSHHHHHHHHHHHTTEE------ETT
T ss_pred HHhhccCCEEEEE-------------------EecCCCc-CccCCCCeEEEEEECcHHHHHHHHHHhCCCE------ECC
Confidence 3699999998876 3444111 123467899999996 57888877411110 124
Q ss_pred ceEEEeC
Q 012831 339 RQIYLTF 345 (455)
Q Consensus 339 rkIfVg~ 345 (455)
++|.|..
T Consensus 91 r~l~V~~ 97 (111)
T 2cpi_A 91 RTLKASL 97 (111)
T ss_dssp EEEEEES
T ss_pred EEEEEEe
Confidence 5677765
No 354
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=92.47 E-value=0.014 Score=48.54 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=29.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..+.. .+ .....++++ +.+++++||+||.|. ++|.+++.
T Consensus 27 ~F~~~G~i~~~~~-------~~----~~~v~i~~~----~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (116)
T 2lcw_A 27 YFKQIGIIKTNKK-------TG----QPMINLYTD----RETGKLKGEATVSFDDPPSAKAAID 75 (116)
Confidence 7999999876210 00 000113344 456889999999995 56777765
No 355
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.27 E-value=0.044 Score=47.00 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=25.2
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. ++++ +|||||.|. ++|.+++.
T Consensus 51 lF~~fG~V~~v~-------------------i~~~----------kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 51 LGLPFGKVTNLL-------------------MLKG----------KNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp HHTTTSCCCEEE-------------------EEGG----------GTEEEEECSCHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EeCC----------CCEEEEEECCHHHHHHHHH
Confidence 799999998865 2222 799999996 56777765
No 356
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=93.14 E-value=0.069 Score=44.02 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=41.4
Q ss_pred HHHHhhhhc--cCCCchhhhhhhhhcc-cchhHHhhCCchHHHHHHHHHHHHHHHhh
Q 012831 8 RIVFNRIKK--LDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAELQQL 61 (455)
Q Consensus 8 ~~v~~ri~~--~~p~~~~ki~g~ll~~-e~~m~rla~~p~~~~~~~~~~ak~~l~~~ 61 (455)
.-+|.+|++ ++||.|.||.|+||=- -.|++.|=- .+.+|++-|..|-.-|.-.
T Consensus 26 E~LyplV~~~~~~pelAgKITGMLLEmd~~ElL~LLe-s~e~L~~kV~EA~~vL~~~ 81 (92)
T 1ifw_A 26 EQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLE-SDELFEQHYKEASAAYESF 81 (92)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccchhhHhHhcCCHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence 458999999 9999999999998864 666777754 4556788888887777553
No 357
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=92.90 E-value=0.052 Score=49.24 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=30.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +..+ + +++++||+||.|. ++|.+|+..
T Consensus 108 ~F~~~G~I~~v~-------------------i~~d----~-~g~~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 108 LFAEFGTLKKAA-------------------VDYD----R-SGRSLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp HHHHTSCCSEEE-------------------ECCC----T-TSSCSCCEEEEESCHHHHHHHHHH
T ss_pred HHHhcCCeEEEE-------------------EEEC----C-CCCEeeEEEEEeCCHHHHHHHHHH
Confidence 799999998765 3444 3 6889999999996 578888773
No 358
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.63 E-value=0.084 Score=42.40 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=27.7
Q ss_pred HHHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 261 LYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 261 ~yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
.+|++||+|..+. +.+++ .+ +||+||.|. ++|.+++..
T Consensus 32 ~~F~~~G~v~~v~-------------------i~~~~----~~---rg~afV~f~~~~~A~~Ai~~ 71 (96)
T 2dgx_A 32 EAFARHGKVKSVE-------------------LSPHT----DY---QLKAVVQMENLQDAIGAVNS 71 (96)
T ss_dssp HHHHHHSCEEEEE-------------------ECSCC----ST---TCCEEEEESSHHHHHHHHHH
T ss_pred HhccccCcEEEEE-------------------EEeCC----CC---CeEEEEEECCHHHHHHHHHH
Confidence 3699999998876 44441 12 899999996 577888763
No 359
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.58 E-value=0.061 Score=44.46 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=24.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +++ .+||+||.|. ++|.+++.
T Consensus 35 ~F~~fG~v~~v~-------------------i~~----------~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 35 LGLPFGKVTNIL-------------------MLK----------GKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp TTTTTSCEEEEE-------------------EET----------TTTEEEEEESSHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EEC----------CCCEEEEEECCHHHHHHHHH
Confidence 699999998764 222 2799999996 56777775
No 360
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.55 E-value=0.037 Score=46.97 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=25.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. + .+++|||||.|. ++|.+++.
T Consensus 46 lF~~fG~V~~v~-------------------i----------~~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 46 LAEPYGKIKNYI-------------------L----------MRMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp TTTTTSCCSEEE-------------------E----------ETTTTEEEEECSSHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------E----------ecCCCEEEEEECCHHHHHHHHH
Confidence 799999998865 1 245899999996 56777776
No 361
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.48 E-value=0.071 Score=44.24 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=24.9
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +++ .+||+||.|. ++|.+++.
T Consensus 35 ~F~~fG~V~~v~-------------------i~~----------~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 35 ALEKFGTICYVM-------------------MMP----------FKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp HHTTTSCEEEEE-------------------EET----------TTTEEEEEESSHHHHHHHHH
T ss_pred HHHhCCCEEEEE-------------------EEC----------CCCEEEEEECCHHHHHHHHH
Confidence 799999998865 211 3799999996 56777775
No 362
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=92.32 E-value=0.11 Score=41.77 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=37.3
Q ss_pred HHHHHhhcCC--CCccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccce
Q 012831 241 IIELLKARRG--NPISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQH 310 (455)
Q Consensus 241 i~Ell~~~~~--~p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~g 310 (455)
..+.++...+ ..+.|.+||.. +|++||.|..+. + .+++||+
T Consensus 16 ~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~-------------------~----------~~~~g~a 66 (101)
T 2la4_A 16 VDHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFK-------------------H----------YPEKGCC 66 (101)
T ss_dssp HHHHHTTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEE-------------------E----------ETTTTEE
T ss_pred hhhhhhcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEE-------------------E----------ecCCCEE
Confidence 4445444332 23678888854 899999987765 1 1568999
Q ss_pred eEEcc--ccHHHHHh
Q 012831 311 AVILA--EDAPKYLE 323 (455)
Q Consensus 311 fV~f~--eda~k~~~ 323 (455)
||.|. ++|.+++.
T Consensus 67 fV~f~~~~~A~~Ai~ 81 (101)
T 2la4_A 67 FIKYDTHEQAAVCIV 81 (101)
T ss_dssp EEECSSHHHHHHHHH
T ss_pred EEEECCHHHHHHHHH
Confidence 99996 56777775
No 363
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.31 E-value=0.05 Score=44.89 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=18.2
Q ss_pred cCCCccceeEEcc--ccHHHHHhh
Q 012831 303 IDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 303 tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+++++||+||.|. ++|.+++..
T Consensus 63 ~g~~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 63 TGRMRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp CSSSCSEEEEECSSHHHHHHHHHH
T ss_pred CCccceEEEEEECCHHHHHHHHHH
Confidence 6889999999996 577788763
No 364
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.31 E-value=0.13 Score=43.07 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=44.1
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcC
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN 398 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln 398 (455)
+-++| + .|.++...||.++|+.|| -..|+.+-|. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~-FP~ewKt~Di~~lFs~fg-gv~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-T-FPKEWKTSDLYQLFSAFG-NIQISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-E-CCTTCCHHHHHHHTTTSE-EEEEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-e-CChhhhhHHHHHHHhccC-CEEEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 45666 4 578999999999999999 5566676654 59999999999999998653
No 365
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=91.94 E-value=0.11 Score=43.23 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=32.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCcc
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGSR 339 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~r 339 (455)
.|++||+|..+. +. +.||||||.|. ++|.+++..-... ...-..+
T Consensus 41 lF~~fG~V~~v~-------------------i~----------~~kg~AFVef~~~~~A~~Av~~ln~~----~~~i~Gr 87 (100)
T 3r27_A 41 ALQEFGPISYVV-------------------VM----------PKKRQALVEFEDVLGACNAVNYAADN----QIYIAGH 87 (100)
T ss_dssp HHGGGSCEEEEE-------------------EE----------TTTTEEEEEESSHHHHHHHHHHHHHS----CEEETTE
T ss_pred HHhccCCEEEEE-------------------EE----------cCCCEEEEEECCHHHHHHHHHHhcCC----CceeCCc
Confidence 699999998865 11 35799999996 5677776531110 0011356
Q ss_pred eEEEeC
Q 012831 340 QIYLTF 345 (455)
Q Consensus 340 kIfVg~ 345 (455)
+|+|..
T Consensus 88 ~i~V~~ 93 (100)
T 3r27_A 88 PAFVNY 93 (100)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 788876
No 366
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=91.85 E-value=0.037 Score=45.36 Aligned_cols=23 Identities=39% Similarity=0.753 Sum_probs=21.0
Q ss_pred CCcccccccCcccCCCCCCccccC
Q 012831 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 182 ~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
....|.+|.||.|.|+ +|+|+|.
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ceeeehhhhhCcCCCC-CcceecC
Confidence 4678999999999997 9999997
No 367
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.80 E-value=0.085 Score=41.62 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=17.8
Q ss_pred cCCCccceeEEcc--ccHHHHHh
Q 012831 303 IDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 303 tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+++++|++||.|. ++|.+++.
T Consensus 46 ~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 46 HGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp TSCEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCceEEEEEECCHHHHHHHHH
Confidence 5789999999996 57888887
No 368
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=91.73 E-value=0.48 Score=38.80 Aligned_cols=65 Identities=6% Similarity=0.119 Sum_probs=52.6
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccC------CCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 339 RQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQ------KRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 339 rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk------~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
.||.|.+ ||.++||+++.+..+.+.++.....+..+ .-.-|+|.|.+.+++..-.+..+++.+-+
T Consensus 2 ~KvVIRr-LPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRR-LPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEE-ECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeC-CCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5899999 99999999999999999877766655431 12359999999999999988888777643
No 369
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=91.47 E-value=0.079 Score=47.07 Aligned_cols=51 Identities=33% Similarity=0.436 Sum_probs=39.8
Q ss_pred HHHhhhhccCCCchhhhhhhhhcc-cchhHHhhCCchHHHHHHHHHHHHHHHh
Q 012831 9 IVFNRIKKLDPENVTKIIGYLLLQ-EQEMIHLAMSPDVVIQEVVYKAKAELQQ 60 (455)
Q Consensus 9 ~v~~ri~~~~p~~~~ki~g~ll~~-e~~m~rla~~p~~~~~~~~~~ak~~l~~ 60 (455)
-+|-+|++++||+|.||.|+||=- -.|++.|=-.| .+|++.|.+|-.-|.-
T Consensus 73 ~LyplV~~~~p~~A~KITGMLLEmd~~ElL~LLes~-e~L~~kV~EA~~vL~~ 124 (144)
T 1g9l_A 73 RLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP-ESLRSKVDEAVAVLQA 124 (144)
T ss_dssp SSHHHHHHHTTSCCSSHHHHTTTSSSHHHHHHHHCT-THHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCccccchhhhhhccCCHHHHHHHHcCH-HHHHHHHHHHHHHHHH
Confidence 368999999999999999998864 67788875554 4567777777666654
No 370
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.44 E-value=0.064 Score=42.17 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=22.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEccc--cHHH
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAE--DAPK 320 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~e--da~k 320 (455)
+|++||.|..+. +..+++||+||.|.+ +|.+
T Consensus 25 ~F~~~G~i~~v~----------------------------i~~~~~g~afV~f~~~~~a~~ 57 (88)
T 1wf0_A 25 FFSQYGDVMDVF----------------------------IPKPFRAFAFVTFADDQIAQS 57 (88)
T ss_dssp HSTTTSCCCEEE----------------------------CCSSCCSCCEEECSCHHHHHH
T ss_pred HHHHcCCeeEEE----------------------------EecCCCCEEEEEECCHHHHHH
Confidence 689999998765 112378999999964 4543
No 371
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.41 E-value=0.1 Score=41.98 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=18.0
Q ss_pred ccCCCccceeEEcc--ccHHHHHh
Q 012831 302 LIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 302 ~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
.+++++||+||.|. ++|.+++.
T Consensus 48 ~~g~~~g~afV~f~~~~~A~~A~~ 71 (101)
T 2fc9_A 48 QNGKSKGYAFIEFASFEDAKEALN 71 (101)
T ss_dssp SSSCBCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEeeEEEEEECCHHHHHHHHH
Confidence 35788999999996 57888877
No 372
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.38 E-value=0.075 Score=42.64 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=16.6
Q ss_pred CCCccceeEEcc--ccHHHHHhh
Q 012831 304 DRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 304 grsrG~gfV~f~--eda~k~~~~ 324 (455)
++++||+||.|. ++|.+++..
T Consensus 53 ~~~~g~afV~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 53 QGPRRRAFLHYPDSAAAQQAVSC 75 (97)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCcEEEEEECCHHHHHHHHHH
Confidence 478999999996 567777753
No 373
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.30 E-value=0.14 Score=43.58 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=33.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCcc
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGSR 339 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~r 339 (455)
+|++||+|..+. + ...+|||||.|. ++|.+|+..-..+. ........+
T Consensus 47 ~F~~fG~v~~v~-------------------i----------~~~rgfaFV~f~~~~~A~~Ai~~lnG~~-~~~~lg~g~ 96 (114)
T 2cq2_A 47 VLEKCGLVDALL-------------------M----------PPNKPYSFARYRTTEESKRAYVTLNGKE-VVDDLGQKI 96 (114)
T ss_dssp HHHHHSCEEEEE-------------------C----------CTTCSCEEEEESSHHHHHHHHHHTTTCE-EECTTSCEE
T ss_pred HHHhcCCeEEEE-------------------E----------eCCCCEEEEEECCHHHHHHHHHHhCCCE-EccccCCCc
Confidence 799999997764 1 123799999996 57888877432221 001112356
Q ss_pred eEEEeC
Q 012831 340 QIYLTF 345 (455)
Q Consensus 340 kIfVg~ 345 (455)
.|||..
T Consensus 97 ~l~v~~ 102 (114)
T 2cq2_A 97 TLYLNF 102 (114)
T ss_dssp ECEEEE
T ss_pred EEEEEe
Confidence 788876
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=91.24 E-value=0.28 Score=41.43 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=33.9
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCcc
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGSR 339 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~r 339 (455)
.|++||+|.++. +.++ .++|++||.|. ++|.+|+..-..+. -..|
T Consensus 37 ~f~kfG~V~~v~-------------------i~~~--------~~~G~~fV~f~~~e~A~~Ai~~lnG~~------f~GR 83 (114)
T 3s6e_A 37 ECNKHGGVIHIY-------------------VDKN--------SAQGNVYVKCPSIAAAIAAVNALHGRW------FAGK 83 (114)
T ss_dssp HHTTTTCCSEEE-------------------ECTT--------CTTCCEEEECSSHHHHHHHHHHHTTCE------ETTE
T ss_pred HHhccCCEEEEE-------------------EecC--------CCcEEEEEEECCHHHHHHHHHHhCCCE------ECCE
Confidence 389999998765 2222 25899999996 57777776422221 1357
Q ss_pred eEEEeC
Q 012831 340 QIYLTF 345 (455)
Q Consensus 340 kIfVg~ 345 (455)
+|.|..
T Consensus 84 ~i~v~~ 89 (114)
T 3s6e_A 84 MITAAY 89 (114)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 777777
No 375
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.22 E-value=0.19 Score=41.54 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=26.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. + .+ ..++||+||.|. ++|.+|+..
T Consensus 46 ~f~~~G~v~~v~-------------------i-~~-------~~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 46 ECSKFGQIRKLL-------------------L-FD-------RHPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp HGGGTSCCSEEE-------------------E-ET-------TCTTCEEEEECSCHHHHHHHHHH
T ss_pred HHHccCCEeEEE-------------------E-ec-------CCCCEEEEEEECCHHHHHHHHHH
Confidence 589999998764 1 22 137899999996 577888763
No 376
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=91.05 E-value=0.074 Score=42.33 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=27.8
Q ss_pred HHHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 261 LYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 261 ~yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
.+|++||.|..+. +. .+++++||+||.|. ++|.+++..
T Consensus 31 ~~f~~~G~i~~v~-------------------i~-------~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 31 AIFSRFGQILDIL-------------------VS-------RSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp HHHGGGSCEEEEE-------------------CC-------HHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred HHHHhCCCEEEEE-------------------EE-------cCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 3799999998865 11 13567899999996 577777763
No 377
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.95 E-value=0.16 Score=42.07 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=25.8
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|..+. +-+++||+||.|. ++|.+|+..
T Consensus 30 ~F~~~G~i~~v~-----------------------------i~~~~g~afV~f~~~~~A~~Ai~~ 65 (111)
T 1whx_A 30 TFSRFGSLGRVL-----------------------------LPEGGITAIVEFLEPLEARKAFRH 65 (111)
T ss_dssp HHHTTSCEEEEE-----------------------------CCSSSSCEEEEESCHHHHHHHHHH
T ss_pred HHHhcCCEEEEE-----------------------------EeCCCCEEEEEeCCHHHHHHHHHH
Confidence 699999998765 1136899999996 577777763
No 378
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.44 E-value=0.17 Score=41.50 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=25.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +.++ ||+||+|. ++|.+|+..
T Consensus 35 ~F~~~G~i~~~~-------------------i~~~-----------g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 35 HMREAGDVCYAD-------------------VYRD-----------GTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp HHGGGSCEEEEE-------------------EETT-----------TEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCEeEEE-------------------EecC-----------CEEEEEECCHHHHHHHHHH
Confidence 799999998865 2221 99999996 578888873
No 379
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.42 E-value=0.089 Score=45.69 Aligned_cols=41 Identities=12% Similarity=-0.062 Sum_probs=37.2
Q ss_pred CCCCeEEEEECCHHHHHHHHHhc-CCeeEcCeEEEEEecccCc
Q 012831 375 QKRMFGFVTFASADTVKMILAKG-NPHFVCGARVLVKPYREKS 416 (455)
Q Consensus 375 k~RGfaFVtF~~~e~A~~Al~~l-n~~~I~Gr~v~Vk~a~~k~ 416 (455)
+.+|+++|+|.+.++|++|++.+ |+..++| .+.+.++..+.
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~ 52 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTF 52 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcc
Confidence 57899999999999999999999 9999999 99999887654
No 380
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=90.14 E-value=0.15 Score=46.32 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=26.7
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
.|++||+|..+. +. +++++||+||.|. ++|.+++..
T Consensus 66 ~Fs~fG~V~~V~-------------------i~--------~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 66 IFSKFGTVLKII-------------------TF--------TKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp HHHHHSCEEEEE-------------------EE--------ESSSCEEEEEEESCHHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EE--------eCCCCCEEEEEECCHHHHHHHHHH
Confidence 699999998865 11 1336899999996 467777764
No 381
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=90.10 E-value=0.053 Score=46.74 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=34.4
Q ss_pred ccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHH
Q 012831 253 ISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYL 322 (455)
Q Consensus 253 ~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~ 322 (455)
+.|.+||.. +|++||.|..+... .+.. .+ ...+++++|||||.|. ++|.+|+
T Consensus 48 l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~------------~~~d--i~----~~~~g~~~g~afV~f~~~~~A~~Ai 109 (143)
T 3egn_A 48 IYVKNLAKHVQEKDLKYIFGRYVDFSSETQR------------IMFD--IR----LMKEGRMKGQAFIGLPNEKAAAKAL 109 (143)
T ss_dssp EEEEEECTTCCHHHHHHHHGGGCCTTCHHHH------------HHCE--EE----EEEETTTEEEEEEECSSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCccccccc------------ceee--EE----eccCCCcccEEEEEeCCHHHHHHHH
Confidence 567777753 89999988764100 0000 00 1235889999999996 5777777
Q ss_pred hh
Q 012831 323 EN 324 (455)
Q Consensus 323 ~~ 324 (455)
..
T Consensus 110 ~~ 111 (143)
T 3egn_A 110 KE 111 (143)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 382
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=90.05 E-value=0.17 Score=42.16 Aligned_cols=44 Identities=27% Similarity=0.343 Sum_probs=30.9
Q ss_pred CCccccccch--------HHHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHH
Q 012831 251 NPISIASLPM--------LYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPK 320 (455)
Q Consensus 251 ~p~~i~~lP~--------~yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k 320 (455)
..+.|.+||. .+|++||+|..+. +.. + ||+||+|. ++|.+
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~-------------------i~~--------~---g~afV~f~~~~~a~~ 66 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREAGDVCYAD-------------------VYR--------D---GTGVVEFVRKEDMTY 66 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGGSCEEEEE-------------------ECT--------T---SEEEEEESSHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------------------Eec--------C---CEEEEEECCHHHHHH
Confidence 4456666663 3899999998865 111 1 99999996 57778
Q ss_pred HHhh
Q 012831 321 YLEN 324 (455)
Q Consensus 321 ~~~~ 324 (455)
|+..
T Consensus 67 Ai~~ 70 (115)
T 3beg_B 67 AVRK 70 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 383
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.81 E-value=0.24 Score=38.29 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=25.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +. +++|++||.|. ++|.+++.
T Consensus 32 ~f~~~G~i~~~~-------------------~~----------~~kg~afV~f~~~~~A~~a~~ 66 (85)
T 2ytc_A 32 HFYQFGEIRTIT-------------------VV----------QRQQCAFIQFATRQAAEVAAE 66 (85)
T ss_dssp HHHTTSCEEEEE-------------------EE----------GGGTEEEEEESSHHHHHHHHH
T ss_pred HHHhCCCEeEEE-------------------EE----------CCCCEEEEEECCHHHHHHHHH
Confidence 799999998765 22 14799999996 57778876
No 384
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.42 E-value=0.14 Score=41.11 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +. +.+||+||.|. ++|.+++..
T Consensus 35 ~F~~~G~i~~v~-------------------~~----------~~kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 35 LFEKYGKAGEVF-------------------IH----------KDKGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp HTSTTCCCSEEE-------------------EE----------TTTTEEEEECSSSHHHHHHHHH
T ss_pred HHhhcCCeEEEE-------------------Ee----------cCCCEEEEEECCHHHHHHHHHH
Confidence 689999987754 11 34799999996 577777753
No 385
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.04 E-value=0.25 Score=39.41 Aligned_cols=34 Identities=6% Similarity=0.167 Sum_probs=25.2
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. +. +.+||+||.|. ++|.+++..
T Consensus 37 ~F~~~G~v~~v~-------------------~~----------~~~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 37 EFDRFGSIRTID-------------------HV----------KGDSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp HHHTTSCEEEEE-------------------EC----------SSSCCEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCeeEEE-------------------Ee----------CCCCEEEEEECCHHHHHHHHHH
Confidence 699999998865 11 12789999996 577777763
No 386
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.79 E-value=0.21 Score=39.91 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=26.5
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. + .+++||+||.|. ++|.+++..
T Consensus 33 ~F~~~G~i~~v~-------------------i----------~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 33 AFSPFGNIIDLS-------------------M----------DPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp HHTTTSCEEEEE-------------------E----------ETTTTEEEEEESSHHHHHHHHHH
T ss_pred HHhhCCCEEEEE-------------------e----------cCCCCEEEEEECCHHHHHHHHHH
Confidence 589999998765 1 357899999996 578888763
No 387
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=88.66 E-value=0.27 Score=45.42 Aligned_cols=59 Identities=15% Similarity=0.069 Sum_probs=39.0
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhhCCCCCCCCCCCCCcc
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLENRNERSDPGPIVTGSR 339 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~r~~r~d~~~~~~~~r 339 (455)
-|++||+|..+. +.++....+.+++++|++||.|. ++|.+++..-..+. -..|
T Consensus 149 e~~~~G~v~~~~-------------------v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~------~~gr 203 (222)
T 3dxb_A 149 ECGKFGAVNRVI-------------------IYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW------FAGR 203 (222)
T ss_dssp HHTTTSCEEEEE-------------------EEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB------SSSS
T ss_pred HHHccCCeEEEE-------------------EecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce------ECCe
Confidence 578899998875 44443444667899999999996 46777776433221 1345
Q ss_pred eEEEeC
Q 012831 340 QIYLTF 345 (455)
Q Consensus 340 kIfVg~ 345 (455)
+|.+..
T Consensus 204 ~i~~~~ 209 (222)
T 3dxb_A 204 KVVAEV 209 (222)
T ss_dssp BCEEEE
T ss_pred EEEEEE
Confidence 666655
No 388
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.65 E-value=0.25 Score=40.36 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=32.4
Q ss_pred CCccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHH
Q 012831 251 NPISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPK 320 (455)
Q Consensus 251 ~p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k 320 (455)
..+.|.+||.. +|++||+|..+. +++ .+||+||.|. ++|.+
T Consensus 26 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~-------------------i~~----------~~g~afV~f~~~~~a~~ 76 (109)
T 1x4g_A 26 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIR-------------------VFP----------EKGYSFVRFSTHESAAH 76 (109)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHSCEEEEE-------------------EET----------TTTEEEEEESSHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------------------EeC----------CCCEEEEEECCHHHHHH
Confidence 34677888843 899999998865 222 1799999996 57777
Q ss_pred HHh
Q 012831 321 YLE 323 (455)
Q Consensus 321 ~~~ 323 (455)
++.
T Consensus 77 A~~ 79 (109)
T 1x4g_A 77 AIV 79 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 389
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=88.22 E-value=0.13 Score=40.86 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=17.7
Q ss_pred ccCCCccceeEEcc--ccHHHHHh
Q 012831 302 LIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 302 ~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
.+++++||+||.|. ++|.+++.
T Consensus 48 ~~~~~~g~afV~f~~~~~a~~A~~ 71 (96)
T 1fjc_A 48 QDGKSKGIAYIEFKSEADAEKNLE 71 (96)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCcceEEEEEECCHHHHHHHHH
Confidence 34778999999996 57888877
No 390
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=86.74 E-value=0.4 Score=39.48 Aligned_cols=42 Identities=19% Similarity=0.400 Sum_probs=30.4
Q ss_pred CccccccchH--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHH
Q 012831 252 PISIASLPML--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKY 321 (455)
Q Consensus 252 p~~i~~lP~~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~ 321 (455)
.+.|.+||.. +|++||+|..+. + . +||+||.|. ++|.++
T Consensus 33 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~-------------------i---------~---kg~afV~f~~~~~A~~A 81 (108)
T 2jvo_A 33 RLFVRPFPLDVQESELNEIFGPFGPMKEVK-------------------I---------L---NGFAFVEFEEAESAAKA 81 (108)
T ss_dssp EEEECSSCTTCCHHHHHHHHTTTSCCCEEE-------------------E---------E---TTEEEEECSSHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEE-------------------E---------E---CCEEEEEECCHHHHHHH
Confidence 3566666643 799999998765 1 1 699999996 577777
Q ss_pred Hhh
Q 012831 322 LEN 324 (455)
Q Consensus 322 ~~~ 324 (455)
+..
T Consensus 82 i~~ 84 (108)
T 2jvo_A 82 IEE 84 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 391
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=86.55 E-value=0.25 Score=42.96 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=25.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccc-eeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQ-HAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~-gfV~f~--eda~k~~~~ 324 (455)
.|++||+|.++. +.+ +.+|| +||.|. ++|.+|+..
T Consensus 48 lFs~yG~V~~V~-------------------i~~---------~~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 48 IFSKFGTVLKII-------------------TFT---------KNNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp HHTTSSCEEEEE-------------------EEE---------ETTEEEEEEEESCHHHHHHHHHH
T ss_pred HHhCcCCEEEEE-------------------EEc---------CCCCcEEEEEECCHHHHHHHHHH
Confidence 799999998865 111 23677 999996 467777653
No 392
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=86.39 E-value=0.23 Score=39.65 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=29.9
Q ss_pred ccccccch---------HHHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHH
Q 012831 253 ISIASLPM---------LYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKY 321 (455)
Q Consensus 253 ~~i~~lP~---------~yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~ 321 (455)
+.|.+||. .+|++||.|..+. + ++||+||.|. ++|.++
T Consensus 13 l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~-------------------i------------~~g~afV~f~~~~~A~~A 61 (96)
T 2kvi_A 13 LFIGNLPLKNVSKEDLFRIFSPYGHIMQIN-------------------I------------KNAFGFIQFDNPQSVRDA 61 (96)
T ss_dssp EEEESSTTSCCCHHHHHHHHTTTCCCCEEE-------------------E------------ETTEEEEEESCHHHHHHH
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCCEEEEE-------------------E------------eCCEEEEEECCHHHHHHH
Confidence 45566664 2799999998765 1 2799999996 577777
Q ss_pred Hhh
Q 012831 322 LEN 324 (455)
Q Consensus 322 ~~~ 324 (455)
+..
T Consensus 62 ~~~ 64 (96)
T 2kvi_A 62 IEC 64 (96)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 393
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=86.27 E-value=0.39 Score=38.60 Aligned_cols=43 Identities=16% Similarity=0.391 Sum_probs=31.7
Q ss_pred CCccccccch-H--------HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHH
Q 012831 251 NPISIASLPM-L--------YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAP 319 (455)
Q Consensus 251 ~p~~i~~lP~-~--------yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~ 319 (455)
..+.|.+||. . +|++||+|..+. + ++||+||.|. ++|.
T Consensus 23 ~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~-------------------i------------~~g~afV~f~~~~~A~ 71 (97)
T 2xnq_A 23 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQIN-------------------I------------KNAFGFIQFDNPQSVR 71 (97)
T ss_dssp CEEEEESCCSSCCCHHHHHHHHGGGSCEEEEE-------------------E------------CSSEEEEEESSHHHHH
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEE-------------------E------------eCCEEEEEECCHHHHH
Confidence 3456777775 2 899999998865 1 3799999996 5777
Q ss_pred HHHhh
Q 012831 320 KYLEN 324 (455)
Q Consensus 320 k~~~~ 324 (455)
+++..
T Consensus 72 ~Ai~~ 76 (97)
T 2xnq_A 72 DAIEX 76 (97)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77763
No 394
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=86.19 E-value=0.57 Score=47.24 Aligned_cols=19 Identities=5% Similarity=-0.052 Sum_probs=15.7
Q ss_pred CccceeEEcc--ccHHHHHhh
Q 012831 306 PHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 306 srG~gfV~f~--eda~k~~~~ 324 (455)
+|||+||+|. ++|.+|++.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHH
Confidence 5799999996 578888874
No 395
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.92 E-value=0.52 Score=36.91 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=24.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. +. +||+||.|. ++|.+++.
T Consensus 28 ~F~~~G~i~~v~-------------------~~------------~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 28 LFEQYGKVLECD-------------------II------------KNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp HHHTSSCEEEEE-------------------EE------------TTEEEEEESSHHHHHHHHH
T ss_pred HHHhCCCEEEEE-------------------EE------------CCEEEEEECCHHHHHHHHH
Confidence 699999998865 11 689999996 57777775
No 396
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=85.86 E-value=0.27 Score=41.56 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=26.0
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||+|..+. + .+++||+||.|. ++|.+|+..
T Consensus 57 ~F~~~G~I~~v~-------------------i----------~~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 57 AFSPFGNIIDLS-------------------M----------DPPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp HHSTTCCCSCEE-------------------E----------ETTTTEEEEECSSHHHHHHHHHH
T ss_pred HHHccCCEEEEE-------------------E----------eCCCCEEEEEECCHHHHHHHHHH
Confidence 489999998765 1 257899999996 577788753
No 397
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.00 E-value=0.43 Score=38.19 Aligned_cols=23 Identities=30% Similarity=0.188 Sum_probs=18.7
Q ss_pred cccCCCccceeEEcc--ccHHHHHh
Q 012831 301 RLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 301 r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+.+++++||+||.|. ++|.+++.
T Consensus 48 ~~~~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2fc8_A 48 RETGSSKGFGFVDFNSEEDAKAAKE 72 (102)
T ss_dssp SSSCSEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCCcCcEEEEEECCHHHHHHHHH
Confidence 456889999999996 57778876
No 398
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=84.63 E-value=0.43 Score=41.01 Aligned_cols=34 Identities=24% Similarity=0.141 Sum_probs=24.0
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccc-eeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQ-HAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~-gfV~f~--eda~k~~~~ 324 (455)
.|++||+|..+. +. .+ .|| |||.|. ++|.+|+..
T Consensus 45 ~Fs~yG~V~~v~-------------------i~---------~~-~Gf~aFVef~~~~~A~~A~~~ 81 (124)
T 2e5i_A 45 VCNPVGKVQRIV-------------------IF---------KR-NGIQAMVEFESVLCAQKAKAA 81 (124)
T ss_dssp HHTTTSCEEEEE-------------------EE---------ES-SSEEEEEEESSHHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------EE---------eC-CCCEEEEEECCHHHHHHHHHH
Confidence 699999998865 11 11 285 999996 467777663
No 399
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=84.21 E-value=0.65 Score=35.80 Aligned_cols=19 Identities=0% Similarity=0.086 Sum_probs=14.9
Q ss_pred CCccceeEEcc--ccHHHHHh
Q 012831 305 RPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 305 rsrG~gfV~f~--eda~k~~~ 323 (455)
+.+||+||.|. ++|.+++.
T Consensus 51 ~~kg~afV~f~~~~~a~~A~~ 71 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAMA 71 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHGG
T ss_pred CCCcEEEEEcCCHHHHHHHHh
Confidence 34899999996 57778873
No 400
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=83.64 E-value=0.6 Score=37.58 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=24.0
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. + .+||+||.|. ++|.+++.
T Consensus 31 ~F~~~G~i~~v~-------------------~------------~~~~afV~f~~~~~a~~A~~ 63 (103)
T 2dgu_A 31 AFSQFGKLERVK-------------------K------------LKDYAFIHFDERDGAVKAME 63 (103)
T ss_dssp HHHHHSCEEEEE-------------------E------------CSSCEEEEESSHHHHHHHHH
T ss_pred HHHhcCCEEEEE-------------------E------------ECCEEEEEeCCHHHHHHHHH
Confidence 699999998765 1 1579999996 57777776
No 401
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=83.33 E-value=0.53 Score=38.39 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=24.4
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||+|..+. + ++||+||.|. ++|.+++.
T Consensus 48 ~F~~~G~v~~v~----------------------------i---~~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 48 IFSKYGRVAGCS----------------------------V---HKGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp HHGGGSCCSEEE----------------------------E---ETTEEEEECSSSHHHHHHHH
T ss_pred HHHhCCCeEEEE----------------------------E---eCCEEEEEECCHHHHHHHHH
Confidence 689999998765 1 5799999996 57777775
No 402
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.52 E-value=0.75 Score=36.66 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=14.3
Q ss_pred CccceeEEcc--ccHHHHHh
Q 012831 306 PHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 306 srG~gfV~f~--eda~k~~~ 323 (455)
.+||+||.|. ++|.+++.
T Consensus 50 ~~g~afV~f~~~~~A~~A~~ 69 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMK 69 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHH
T ss_pred eCCeEEEEeCCHHHHHHHHH
Confidence 3689999996 57778776
No 403
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.46 E-value=0.4 Score=37.78 Aligned_cols=19 Identities=21% Similarity=0.069 Sum_probs=15.0
Q ss_pred CccceeEEcc--ccHHHHHhh
Q 012831 306 PHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 306 srG~gfV~f~--eda~k~~~~ 324 (455)
++||+||.|. ++|.+++..
T Consensus 43 ~~g~afV~f~~~~~A~~A~~~ 63 (93)
T 2cqh_A 43 KSGYAFVDYPDQNWAIRAIET 63 (93)
T ss_dssp ETTEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHH
Confidence 4799999996 577788763
No 404
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=80.27 E-value=1.7 Score=41.59 Aligned_cols=28 Identities=32% Similarity=0.883 Sum_probs=24.5
Q ss_pred CCcccccccCcccCCCCCCccccCCccch
Q 012831 182 PVKTCHYFNKGFCKHGSNCRYYHGLVSES 210 (455)
Q Consensus 182 ~~kpC~Yf~rG~Ck~G~sCry~Hg~~~~~ 210 (455)
...+|+||+||+|++|..|+|.|. +|..
T Consensus 69 ~~~~C~ffakG~C~~G~~C~y~H~-lPt~ 96 (240)
T 3u1l_A 69 QLFFCLFFAKGMCCLGPKCEYLHH-IPDE 96 (240)
T ss_dssp CCSBCHHHHTTCCSCGGGCSSBBS-CCCH
T ss_pred CCeEcCccccCCCCCCCCCCccCC-CCCc
Confidence 356999999999999999999998 6653
No 405
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=80.18 E-value=0.48 Score=37.11 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.5
Q ss_pred CCccceeEEcc--ccHHHHHh
Q 012831 305 RPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 305 rsrG~gfV~f~--eda~k~~~ 323 (455)
+++||+||.|. ++|.+++.
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~ 58 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQ 58 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHH
T ss_pred CCCcEEEEEECCHHHHHHHHH
Confidence 57899999996 57777776
No 406
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.03 E-value=1.7 Score=34.27 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=12.2
Q ss_pred ceeEEcc--ccHHHHHh
Q 012831 309 QHAVILA--EDAPKYLE 323 (455)
Q Consensus 309 ~gfV~f~--eda~k~~~ 323 (455)
|+||.|. ++|.+++.
T Consensus 47 ~afV~f~~~~~a~~ai~ 63 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS 63 (94)
T ss_dssp EEEEEESSHHHHHHHHT
T ss_pred EEEEEECCHHHHHHHHh
Confidence 9999996 56777776
No 407
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.12 E-value=1.3 Score=34.57 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=24.1
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHhh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~~ 324 (455)
+|++||.|..+. + .+||+||.|. ++|.+++..
T Consensus 29 ~F~~~G~v~~~~-------------------~------------~~~~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 29 LFERRGRVIECD-------------------V------------VKDYAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp HHHHHSCEEEEE-------------------E------------CSSCEEEEESCHHHHHHHHHH
T ss_pred HHHcCCCEEEEE-------------------E------------ECCEEEEEECCHHHHHHHHHH
Confidence 799999998765 1 1469999996 577777763
No 408
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=78.23 E-value=3.4 Score=34.17 Aligned_cols=67 Identities=7% Similarity=0.092 Sum_probs=47.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeecc----C--CCCeEEEEECCHHHHHHHHHhcCCeeEcC
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQ----Q--KRMFGFVTFASADTVKMILAKGNPHFVCG 404 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~d----k--~RGfaFVtF~~~e~A~~Al~~ln~~~I~G 404 (455)
.+-||.|.. ||+.+||+++.+.++.+=++..-..... + .-.-|+|.|.+.+++..-.+..+++.+-+
T Consensus 8 ~~~KvVIRr-LPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRR-LPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEEC-CCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeC-CCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 356899999 9999999998877765533222111111 0 11248999999999999999888887743
No 409
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.08 E-value=1 Score=35.37 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=13.2
Q ss_pred ccceeEEcc--ccHHHHHh
Q 012831 307 HGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 307 rG~gfV~f~--eda~k~~~ 323 (455)
+||+||.|. ++|.+++.
T Consensus 44 ~~~afV~f~~~~~a~~A~~ 62 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIR 62 (92)
T ss_dssp SSEEEEEESCHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHH
Confidence 459999996 57777775
No 410
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.63 E-value=1.6 Score=36.16 Aligned_cols=17 Identities=6% Similarity=0.055 Sum_probs=13.3
Q ss_pred cceeEEcc--ccHHHHHhh
Q 012831 308 GQHAVILA--EDAPKYLEN 324 (455)
Q Consensus 308 G~gfV~f~--eda~k~~~~ 324 (455)
||+||+|. ++|.+|+..
T Consensus 47 G~AfV~F~~~esA~~A~~~ 65 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKR 65 (96)
T ss_dssp TCEEEEESSHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHH
Confidence 99999996 567777653
No 411
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.47 E-value=2 Score=33.74 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=23.9
Q ss_pred HHhhcCceeeeccccccccccccccccceeeEeeccccccccCCCccceeEEcc--ccHHHHHh
Q 012831 262 YYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILA--EDAPKYLE 323 (455)
Q Consensus 262 yF~kfG~Vl~~~~~~~~sqr~g~~Gy~l~~~v~rd~n~~r~tgrsrG~gfV~f~--eda~k~~~ 323 (455)
+|++||.|..++ .++++ +..|.+||.|. ++|.+++.
T Consensus 35 ~F~~~G~v~~~~------------------~i~~~--------~~~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 35 LLVQYGVVESCE------------------QVNTD--------SETAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp HHHHHSCEEEEE------------------EECCS--------SSSEEEEEEESSHHHHHHHHH
T ss_pred HHHhcCCeEEEE------------------EeecC--------CCCCEEEEEECCHHHHHHHHH
Confidence 799999998762 02222 23344999996 56777776
No 412
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=70.45 E-value=12 Score=39.32 Aligned_cols=56 Identities=14% Similarity=0.332 Sum_probs=44.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhhccCCceeEEeeccCCCCeEEEEECCHHHHHHHHHhcC
Q 012831 337 GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGN 398 (455)
Q Consensus 337 ~~rkIfVg~~l~~~~teedLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln 398 (455)
....++|+. +..+...+|.+.|+.||. .+|+.+. ...|||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~f--~~~~~~~~i~~~fs~fg~-v~V~wid---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVTF--PKEWKTSDLYQLFSAFGN-IQISWID---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEEC--CTTCCHHHHHHHGGGGCC-CEEEECS---SSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEeC--CCCCCHHHHHHHHHhcCC-EEEEEEc---CCeEEEEECCHHHHHHHHHHHH
Confidence 345667765 567788999999999995 4666655 3479999999999999998864
No 413
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=48.21 E-value=5.4 Score=37.83 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=21.7
Q ss_pred CCCcccccccCccc----CCCCCCccccC
Q 012831 181 LPVKTCHYFNKGFC----KHGSNCRYYHG 205 (455)
Q Consensus 181 ~~~kpC~Yf~rG~C----k~G~sCry~Hg 205 (455)
..+..|+||--|.| ..|+.|+|.|.
T Consensus 87 ~~LHLCK~~l~G~C~~~~~~~~~Ck~SHd 115 (229)
T 3u9g_A 87 DSLHLCKLNLLGRCHYAQSQRNLCKYSHD 115 (229)
T ss_dssp CSBCCCHHHHTTCCGGGTCCSSCCSSCSC
T ss_pred cceeechhhhcCcCCcccCCCCCcccccc
Confidence 36889999999999 46799999997
No 414
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=44.32 E-value=8.6 Score=36.45 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=21.1
Q ss_pred CCcccccccCcccCCCCCCccccC
Q 012831 182 PVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 182 ~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
-+.+|.||-+|.|+. .+|+-.|.
T Consensus 174 kLHIC~~Fl~G~C~f-~~CkRsH~ 196 (229)
T 3u9g_A 174 RLHICEHFTRGNCSY-LNCLRSHN 196 (229)
T ss_dssp SBCSCHHHHTTCCCC-SSCSSCCC
T ss_pred ceeccchhhcCCcCC-CCccCccC
Confidence 478999999999999 89999997
No 415
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=32.60 E-value=9.3 Score=36.14 Aligned_cols=24 Identities=33% Similarity=0.784 Sum_probs=0.0
Q ss_pred CCCCcccccccCcccCCCCCCccccC
Q 012831 180 ELPVKTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 180 ~~~~kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
+..|.||-|-. -|.-|+.|+|.|-
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~~ 212 (223)
T 3v33_A 189 EHRKQPCPYGR--KCTYGIKCRFFHP 212 (223)
T ss_dssp --------------------------
T ss_pred ccCCCCCCCCc--ccccCCcceecCC
Confidence 44688999954 5999999999995
No 416
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=23.85 E-value=19 Score=25.97 Aligned_cols=21 Identities=33% Similarity=0.833 Sum_probs=16.2
Q ss_pred cccccccCcccCCCCCCccccC
Q 012831 184 KTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 184 kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
.||.=-.++||-|| .|.|.+.
T Consensus 6 ~~C~~~~~~yC~nG-~C~~~~~ 26 (50)
T 3e50_C 6 NDCPDSHTQFCFHG-TCRFLVQ 26 (50)
T ss_pred cccChhhcCcccCC-EEeeccC
Confidence 47773338999999 9999764
No 417
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=23.49 E-value=19 Score=25.95 Aligned_cols=21 Identities=33% Similarity=0.896 Sum_probs=17.0
Q ss_pred cccccccCcccCCCCCCccccC
Q 012831 184 KTCHYFNKGFCKHGSNCRYYHG 205 (455)
Q Consensus 184 kpC~Yf~rG~Ck~G~sCry~Hg 205 (455)
.||.=..++||.|| .|.|.++
T Consensus 10 ~~C~~~~~~yC~nG-~C~~i~~ 30 (50)
T 2rnl_A 10 NPCNAEFQNFCIHG-ECKYIEH 30 (50)
T ss_dssp CTTTTTGGGTCSSS-EEEEETT
T ss_pred cccCchhhCcCCCC-EEEEecC
Confidence 48885556999999 9999876
No 418
>1i25_A Huwentoxin-II, HWTX-II; neurotoxin, insecticidal toxin, disulfide bonds; NMR {Ornithoctonus huwena} SCOP: g.3.6.2
Probab=23.18 E-value=25 Score=23.53 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=17.0
Q ss_pred CCCCcccccccCcccCCCCCCccc
Q 012831 180 ELPVKTCHYFNKGFCKHGSNCRYY 203 (455)
Q Consensus 180 ~~~~kpC~Yf~rG~Ck~G~sCry~ 203 (455)
-.|.|||. +--|+-|..|+|-
T Consensus 12 KeG~kpCK---~KKC~GGWkCK~n 32 (37)
T 1i25_A 12 KEGDKPCK---KKKCKGGWKCKFN 32 (37)
T ss_dssp BCSSSBCB---CCCCCTTEEECSS
T ss_pred ccCCCccc---cccCCCCceEEEE
Confidence 34779997 7789999999873
No 419
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=21.36 E-value=19 Score=31.63 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=17.5
Q ss_pred HHHHHHhhccCCceeEEeeccCCCCeEEEEEC
Q 012831 354 DDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFA 385 (455)
Q Consensus 354 edLr~~Fs~fG~I~~V~I~~dk~RGfaFVtF~ 385 (455)
+|+.++|...|.|.... ..||||||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn----~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN----VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE----TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE----CCCCeeEEeeC
Confidence 45566677777665543 36899999976
No 420
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=20.74 E-value=1.6e+02 Score=21.90 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=41.2
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhccCCc-----eeEEeeccCCCCeEEEEECCHHHHHHHHHhcCCeeEcCeEEEEEecc
Q 012831 340 QIYLTFPAESTFTEDDVSNYFNTYGPV-----DDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYR 413 (455)
Q Consensus 340 kIfVg~~l~~~~teedLr~~Fs~fG~I-----~~V~I~~dk~RGfaFVtF~~~e~A~~Al~~ln~~~I~Gr~v~Vk~a~ 413 (455)
++||..--...++..+|-.++..-+.| -.|+|. -.|.||.-.. +.++.+++.++...++|+.+.|..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 455543234556667777777655444 345553 3589998866 45677788888899999999988764
No 421
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}
Probab=20.12 E-value=21 Score=32.10 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=34.4
Q ss_pred CCchhhHHHHHhhhhccCCCchhhhhhhhhcccchhHHhhCCchH
Q 012831 1 MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQEQEMIHLAMSPDV 45 (455)
Q Consensus 1 md~~e~t~~v~~ri~~~~p~~~~ki~g~ll~~e~~m~rla~~p~~ 45 (455)
|..||-++-+|..+..++|+....+|.-+-+.+.+..+++++|+.
T Consensus 11 ~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~w~~~~~~~~~ 55 (171)
T 3eqe_A 11 MELYECIQDIFGGLKNPSVKDLATSLKQIPNAAKLSQPYIKEPDQ 55 (171)
T ss_dssp CCHHHHHHHHHTTCSSCCHHHHHHHHTTSTTHHHHHTTSCCCCSS
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCCHHHHhhcccCCCC
Confidence 778899999999988888888888777665557777666665543
Done!