Query 012833
Match_columns 455
No_of_seqs 246 out of 311
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:47:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 99.2 1.3E-08 2.8E-13 107.5 27.6 53 140-192 201-253 (428)
2 PRK11637 AmiB activator; Provi 98.8 1.5E-06 3.3E-11 91.8 24.2 79 125-203 172-250 (428)
3 COG3883 Uncharacterized protei 98.7 8.5E-06 1.8E-10 80.8 23.3 151 42-192 42-210 (265)
4 PRK09039 hypothetical protein; 98.5 5.4E-05 1.2E-09 78.3 23.6 161 4-184 24-184 (343)
5 COG1579 Zn-ribbon protein, pos 98.4 5.8E-05 1.3E-09 74.2 22.0 67 42-108 21-87 (239)
6 PF12718 Tropomyosin_1: Tropom 98.4 5.5E-05 1.2E-09 69.0 20.1 135 43-182 5-139 (143)
7 COG4942 Membrane-bound metallo 98.4 0.00013 2.9E-09 76.6 23.8 82 123-204 161-242 (420)
8 TIGR02169 SMC_prok_A chromosom 98.3 8.4E-05 1.8E-09 86.5 24.7 13 45-57 294-306 (1164)
9 PF12718 Tropomyosin_1: Tropom 98.3 0.00015 3.3E-09 66.1 19.5 53 47-99 2-54 (143)
10 PF00261 Tropomyosin: Tropomyo 98.2 0.00011 2.5E-09 72.0 18.3 149 53-202 2-150 (237)
11 COG3883 Uncharacterized protei 98.2 0.0016 3.5E-08 64.9 25.2 156 44-201 37-212 (265)
12 PRK02224 chromosome segregatio 98.1 0.0079 1.7E-07 69.0 33.9 138 45-185 468-605 (880)
13 PHA02562 46 endonuclease subun 98.1 0.00053 1.2E-08 74.3 21.8 88 111-198 301-391 (562)
14 PF00261 Tropomyosin: Tropomyo 98.0 0.00069 1.5E-08 66.5 19.7 149 47-196 3-151 (237)
15 COG1579 Zn-ribbon protein, pos 98.0 0.0017 3.6E-08 64.0 22.1 8 115-122 72-79 (239)
16 COG4942 Membrane-bound metallo 98.0 0.0023 5E-08 67.4 24.1 52 141-192 193-244 (420)
17 KOG0250 DNA repair protein RAD 98.0 0.0022 4.8E-08 73.6 25.3 76 110-185 352-428 (1074)
18 COG1196 Smc Chromosome segrega 98.0 0.0012 2.6E-08 78.2 24.3 11 371-381 1021-1031(1163)
19 COG1196 Smc Chromosome segrega 98.0 0.0012 2.5E-08 78.4 24.1 11 83-93 761-771 (1163)
20 KOG0250 DNA repair protein RAD 97.9 0.0013 2.8E-08 75.5 22.5 93 110-202 338-431 (1074)
21 TIGR01843 type_I_hlyD type I s 97.9 0.012 2.6E-07 61.0 26.9 29 41-69 77-105 (423)
22 PHA02562 46 endonuclease subun 97.9 0.0011 2.3E-08 72.0 19.8 20 43-62 179-198 (562)
23 PRK02224 chromosome segregatio 97.8 0.0025 5.4E-08 73.1 23.0 27 44-70 205-231 (880)
24 PRK03918 chromosome segregatio 97.8 0.0027 5.9E-08 72.6 23.1 37 151-187 666-702 (880)
25 PF07888 CALCOCO1: Calcium bin 97.8 0.012 2.6E-07 64.1 25.6 162 42-204 140-315 (546)
26 KOG0161 Myosin class II heavy 97.8 0.0037 8E-08 76.4 23.7 21 113-133 1010-1030(1930)
27 PRK09039 hypothetical protein; 97.8 0.004 8.7E-08 64.5 21.1 20 51-70 45-64 (343)
28 KOG0996 Structural maintenance 97.7 0.0033 7.2E-08 72.6 20.9 89 110-198 908-996 (1293)
29 PF09726 Macoilin: Transmembra 97.7 0.0078 1.7E-07 67.8 23.3 163 41-203 456-653 (697)
30 PRK04863 mukB cell division pr 97.7 0.023 4.9E-07 68.9 27.8 35 162-196 439-473 (1486)
31 KOG0933 Structural maintenance 97.6 0.017 3.7E-07 66.0 24.8 126 77-202 752-880 (1174)
32 TIGR00606 rad50 rad50. This fa 97.6 0.023 5E-07 68.3 27.4 33 229-276 1120-1152(1311)
33 KOG0996 Structural maintenance 97.6 0.017 3.8E-07 66.9 24.3 82 115-196 485-566 (1293)
34 PF07888 CALCOCO1: Calcium bin 97.6 0.02 4.3E-07 62.4 23.7 103 43-153 134-236 (546)
35 KOG0161 Myosin class II heavy 97.6 0.012 2.7E-07 72.0 24.0 8 288-295 1155-1162(1930)
36 KOG0933 Structural maintenance 97.5 0.094 2E-06 60.3 28.9 129 53-181 742-887 (1174)
37 PF12128 DUF3584: Protein of u 97.5 0.21 4.5E-06 59.9 33.8 34 346-379 982-1015(1201)
38 PF15619 Lebercilin: Ciliary p 97.5 0.057 1.2E-06 51.8 23.8 153 45-198 12-183 (194)
39 PF05667 DUF812: Protein of un 97.5 0.017 3.7E-07 64.0 22.5 150 44-198 327-480 (594)
40 PF10174 Cast: RIM-binding pro 97.5 0.044 9.5E-07 62.4 25.5 102 44-146 321-422 (775)
41 PF00038 Filament: Intermediat 97.5 0.11 2.5E-06 52.3 26.4 32 146-177 218-249 (312)
42 COG4372 Uncharacterized protei 97.4 0.21 4.5E-06 52.3 28.2 58 43-100 79-143 (499)
43 PF12128 DUF3584: Protein of u 97.4 0.52 1.1E-05 56.5 38.3 100 39-138 601-707 (1201)
44 PF05667 DUF812: Protein of un 97.4 0.03 6.6E-07 62.0 22.6 155 44-203 320-478 (594)
45 KOG0243 Kinesin-like protein [ 97.4 0.24 5.3E-06 57.5 30.1 68 324-394 636-703 (1041)
46 TIGR00606 rad50 rad50. This fa 97.3 0.7 1.5E-05 56.0 36.2 36 43-78 827-862 (1311)
47 PF00038 Filament: Intermediat 97.3 0.14 3E-06 51.7 24.9 40 146-185 211-250 (312)
48 KOG0995 Centromere-associated 97.3 0.39 8.5E-06 52.5 35.0 151 43-194 233-393 (581)
49 PRK04778 septation ring format 97.3 0.43 9.3E-06 52.7 30.0 57 146-202 378-434 (569)
50 PF09726 Macoilin: Transmembra 97.3 0.033 7.2E-07 62.8 21.4 98 43-141 423-520 (697)
51 PRK04863 mukB cell division pr 97.3 0.055 1.2E-06 65.7 24.4 9 314-322 601-609 (1486)
52 PF12795 MscS_porin: Mechanose 97.3 0.15 3.2E-06 50.1 23.5 123 76-199 81-212 (240)
53 PF08317 Spc7: Spc7 kinetochor 97.3 0.055 1.2E-06 55.6 21.3 73 125-197 211-287 (325)
54 TIGR01843 type_I_hlyD type I s 97.2 0.041 8.9E-07 57.1 20.5 24 172-195 246-269 (423)
55 KOG1029 Endocytic adaptor prot 97.2 0.029 6.3E-07 62.7 19.8 64 43-106 442-505 (1118)
56 PF15070 GOLGA2L5: Putative go 97.2 0.59 1.3E-05 52.3 30.0 130 50-179 20-150 (617)
57 PF05701 WEMBL: Weak chloropla 97.2 0.06 1.3E-06 58.9 21.9 38 110-147 296-333 (522)
58 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.2 0.069 1.5E-06 47.9 18.5 121 46-174 4-128 (132)
59 PF13851 GAS: Growth-arrest sp 97.2 0.16 3.5E-06 48.9 22.1 103 47-154 29-131 (201)
60 PF15619 Lebercilin: Ciliary p 97.1 0.24 5.3E-06 47.5 23.0 63 134-196 122-188 (194)
61 PRK01156 chromosome segregatio 97.1 0.049 1.1E-06 62.9 21.7 41 147-187 677-717 (895)
62 KOG0946 ER-Golgi vesicle-tethe 97.1 0.12 2.6E-06 58.3 23.0 93 107-199 735-833 (970)
63 PRK04778 septation ring format 97.1 0.058 1.3E-06 59.5 20.9 20 43-62 254-273 (569)
64 PF08614 ATG16: Autophagy prot 97.1 0.011 2.3E-07 56.4 13.2 62 40-101 69-130 (194)
65 PRK01156 chromosome segregatio 97.1 0.1 2.2E-06 60.2 23.3 16 370-385 760-775 (895)
66 PF10473 CENP-F_leu_zip: Leuci 97.0 0.22 4.8E-06 45.5 20.3 17 151-167 87-103 (140)
67 KOG0994 Extracellular matrix g 97.0 0.45 9.8E-06 55.6 26.9 154 44-198 1548-1701(1758)
68 KOG0995 Centromere-associated 97.0 0.16 3.4E-06 55.5 22.4 94 110-203 295-391 (581)
69 COG1340 Uncharacterized archae 97.0 0.46 9.9E-06 48.3 24.3 46 45-90 41-86 (294)
70 TIGR01000 bacteriocin_acc bact 96.9 0.33 7.1E-06 52.0 24.4 26 42-67 94-119 (457)
71 PF10174 Cast: RIM-binding pro 96.9 0.091 2E-06 59.9 20.7 16 42-57 228-243 (775)
72 PRK11281 hypothetical protein; 96.9 1.5 3.4E-05 52.1 42.3 48 351-398 416-470 (1113)
73 COG4372 Uncharacterized protei 96.9 0.44 9.6E-06 49.9 23.5 50 50-99 107-156 (499)
74 PF08317 Spc7: Spc7 kinetochor 96.9 0.21 4.5E-06 51.4 21.4 83 111-193 179-265 (325)
75 PF08614 ATG16: Autophagy prot 96.9 0.018 3.9E-07 54.8 12.6 54 134-187 120-173 (194)
76 COG1340 Uncharacterized archae 96.9 0.52 1.1E-05 47.9 23.3 52 153-204 160-211 (294)
77 PF05701 WEMBL: Weak chloropla 96.8 0.28 6.1E-06 53.7 22.9 74 66-140 281-354 (522)
78 KOG1029 Endocytic adaptor prot 96.8 0.18 4E-06 56.6 21.0 56 50-105 414-469 (1118)
79 KOG4643 Uncharacterized coiled 96.8 0.12 2.7E-06 59.3 20.0 146 40-185 172-335 (1195)
80 PRK10929 putative mechanosensi 96.8 0.43 9.4E-06 56.5 25.3 55 139-193 182-236 (1109)
81 KOG0978 E3 ubiquitin ligase in 96.8 0.62 1.3E-05 52.4 25.0 103 121-223 536-642 (698)
82 PF05911 DUF869: Plant protein 96.7 0.19 4.1E-06 57.3 21.4 121 42-163 586-706 (769)
83 PF09730 BicD: Microtubule-ass 96.7 0.78 1.7E-05 52.0 25.9 160 44-203 264-457 (717)
84 KOG0980 Actin-binding protein 96.7 0.44 9.5E-06 54.4 23.3 50 90-140 441-490 (980)
85 smart00787 Spc7 Spc7 kinetocho 96.7 0.33 7.1E-06 49.9 20.9 52 145-196 226-281 (312)
86 TIGR03007 pepcterm_ChnLen poly 96.7 0.5 1.1E-05 50.8 23.5 60 43-102 166-233 (498)
87 PF12795 MscS_porin: Mechanose 96.7 0.58 1.2E-05 45.9 21.8 60 134-193 154-213 (240)
88 KOG4643 Uncharacterized coiled 96.6 0.16 3.4E-06 58.5 19.6 152 44-200 169-336 (1195)
89 KOG1003 Actin filament-coating 96.6 0.7 1.5E-05 44.4 21.8 55 44-98 17-71 (205)
90 KOG0964 Structural maintenance 96.6 0.29 6.3E-06 56.3 21.3 46 152-197 454-499 (1200)
91 PF04849 HAP1_N: HAP1 N-termin 96.6 0.53 1.2E-05 48.1 21.5 39 41-79 156-194 (306)
92 KOG4674 Uncharacterized conser 96.6 3.1 6.8E-05 51.4 33.4 50 50-99 1234-1283(1822)
93 smart00787 Spc7 Spc7 kinetocho 96.6 0.43 9.3E-06 49.1 20.9 81 113-193 176-260 (312)
94 KOG4360 Uncharacterized coiled 96.6 0.16 3.5E-06 54.7 18.1 163 47-217 161-329 (596)
95 PF15070 GOLGA2L5: Putative go 96.5 0.43 9.4E-06 53.3 22.3 99 42-140 84-184 (617)
96 KOG0980 Actin-binding protein 96.5 0.46 9.9E-06 54.2 22.3 124 49-173 390-516 (980)
97 KOG4673 Transcription factor T 96.5 1.5 3.3E-05 49.0 25.5 39 113-151 520-558 (961)
98 TIGR01005 eps_transp_fam exopo 96.5 0.41 8.9E-06 54.4 22.4 22 171-192 375-396 (754)
99 PF06008 Laminin_I: Laminin Do 96.5 1.1 2.3E-05 44.6 23.2 178 45-226 17-199 (264)
100 KOG0977 Nuclear envelope prote 96.5 0.2 4.3E-06 54.9 18.4 82 113-194 103-184 (546)
101 TIGR01000 bacteriocin_acc bact 96.4 0.21 4.5E-06 53.5 18.5 25 40-64 99-123 (457)
102 PF13870 DUF4201: Domain of un 96.4 0.8 1.7E-05 42.9 23.4 120 44-164 5-132 (177)
103 KOG0964 Structural maintenance 96.4 0.4 8.6E-06 55.3 21.1 39 43-81 256-294 (1200)
104 PF13851 GAS: Growth-arrest sp 96.4 0.64 1.4E-05 44.8 20.1 18 178-195 149-166 (201)
105 PF11932 DUF3450: Protein of u 96.4 0.68 1.5E-05 45.7 20.8 7 173-179 132-138 (251)
106 PF04849 HAP1_N: HAP1 N-termin 96.4 0.42 9.1E-06 48.9 19.4 86 111-196 208-300 (306)
107 PF05911 DUF869: Plant protein 96.4 0.38 8.3E-06 54.9 20.8 130 50-194 587-716 (769)
108 KOG0243 Kinesin-like protein [ 96.4 3.1 6.8E-05 48.8 30.1 31 320-350 643-673 (1041)
109 PF04012 PspA_IM30: PspA/IM30 96.4 1.1 2.3E-05 43.3 23.3 117 48-167 26-142 (221)
110 PF04111 APG6: Autophagy prote 96.3 0.11 2.4E-06 53.3 14.9 84 115-198 49-132 (314)
111 KOG0979 Structural maintenance 96.3 0.7 1.5E-05 53.5 22.1 58 45-102 174-237 (1072)
112 PF04111 APG6: Autophagy prote 96.3 0.11 2.4E-06 53.3 14.7 77 117-193 58-134 (314)
113 PF05384 DegS: Sensor protein 96.3 1 2.2E-05 42.1 19.6 128 50-184 25-152 (159)
114 COG5185 HEC1 Protein involved 96.2 0.9 1.9E-05 48.8 21.1 43 337-379 564-606 (622)
115 KOG0976 Rho/Rac1-interacting s 96.2 1.7 3.6E-05 49.5 23.9 88 81-168 285-375 (1265)
116 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.2 0.85 1.8E-05 40.9 18.4 60 125-184 61-124 (132)
117 KOG0971 Microtubule-associated 96.2 0.93 2E-05 52.0 22.1 39 63-101 400-438 (1243)
118 TIGR03007 pepcterm_ChnLen poly 96.2 0.65 1.4E-05 50.0 20.8 22 171-192 354-375 (498)
119 TIGR02680 conserved hypothetic 96.1 0.98 2.1E-05 54.9 23.8 33 360-392 606-638 (1353)
120 PF05010 TACC: Transforming ac 96.1 1.5 3.2E-05 42.7 20.7 127 50-194 14-140 (207)
121 KOG0971 Microtubule-associated 96.1 1.3 2.7E-05 51.0 22.6 33 39-71 225-257 (1243)
122 PF10186 Atg14: UV radiation r 96.1 1 2.2E-05 44.6 20.3 80 114-193 68-147 (302)
123 KOG4674 Uncharacterized conser 96.1 1.2 2.6E-05 54.8 23.7 125 74-198 690-824 (1822)
124 KOG0994 Extracellular matrix g 96.1 0.91 2E-05 53.3 21.4 51 53-103 1585-1635(1758)
125 PRK11281 hypothetical protein; 96.0 1.1 2.4E-05 53.3 23.0 112 78-190 126-252 (1113)
126 PF12325 TMF_TATA_bd: TATA ele 96.0 0.44 9.5E-06 42.5 15.0 7 50-56 21-27 (120)
127 KOG0963 Transcription factor/C 96.0 1.4 3.1E-05 48.7 21.7 121 78-198 194-343 (629)
128 PRK10929 putative mechanosensi 95.9 0.89 1.9E-05 54.0 21.5 64 139-202 175-238 (1109)
129 TIGR03017 EpsF chain length de 95.9 2.7 5.8E-05 44.5 23.4 15 114-128 259-273 (444)
130 PF04582 Reo_sigmaC: Reovirus 95.9 0.015 3.4E-07 59.5 6.2 124 47-185 30-153 (326)
131 PF15397 DUF4618: Domain of un 95.8 2.3 5E-05 42.6 23.0 30 169-198 190-219 (258)
132 KOG0612 Rho-associated, coiled 95.8 1.1 2.4E-05 52.8 21.2 95 43-142 439-534 (1317)
133 KOG0977 Nuclear envelope prote 95.8 0.57 1.2E-05 51.4 18.1 142 44-186 41-190 (546)
134 PF06160 EzrA: Septation ring 95.8 1.2 2.7E-05 49.1 21.1 20 43-62 250-269 (560)
135 PF09304 Cortex-I_coil: Cortex 95.8 0.69 1.5E-05 40.3 15.0 33 117-149 59-91 (107)
136 KOG0612 Rho-associated, coiled 95.8 2.4 5.3E-05 50.2 23.6 41 66-106 494-534 (1317)
137 PF10186 Atg14: UV radiation r 95.8 1.3 2.8E-05 43.9 19.4 24 47-70 22-45 (302)
138 KOG0963 Transcription factor/C 95.7 1 2.2E-05 49.9 19.4 23 48-70 192-214 (629)
139 KOG0018 Structural maintenance 95.7 1.1 2.4E-05 52.3 20.5 68 116-183 381-448 (1141)
140 PF12325 TMF_TATA_bd: TATA ele 95.7 0.65 1.4E-05 41.4 14.9 23 78-100 21-43 (120)
141 PF04582 Reo_sigmaC: Reovirus 95.7 0.021 4.6E-07 58.5 6.2 60 42-101 32-91 (326)
142 PRK10884 SH3 domain-containing 95.7 0.23 5.1E-06 48.1 13.1 50 144-193 118-167 (206)
143 KOG0976 Rho/Rac1-interacting s 95.6 1.7 3.8E-05 49.3 20.8 54 43-96 104-157 (1265)
144 KOG0979 Structural maintenance 95.6 2.2 4.8E-05 49.6 22.1 40 44-83 180-219 (1072)
145 PF09755 DUF2046: Uncharacteri 95.6 3.3 7.2E-05 42.5 29.2 100 113-212 110-211 (310)
146 PF01576 Myosin_tail_1: Myosin 95.5 0.0037 8E-08 72.0 0.0 100 61-161 133-232 (859)
147 KOG4360 Uncharacterized coiled 95.5 1.7 3.7E-05 47.1 19.6 51 368-432 459-510 (596)
148 KOG0978 E3 ubiquitin ligase in 95.5 3.2 6.9E-05 47.0 22.6 94 111-204 519-612 (698)
149 PF01576 Myosin_tail_1: Myosin 95.4 0.004 8.6E-08 71.7 0.0 159 42-200 332-503 (859)
150 TIGR03185 DNA_S_dndD DNA sulfu 95.4 1.4 3.1E-05 49.3 20.1 22 61-82 393-414 (650)
151 PF00769 ERM: Ezrin/radixin/mo 95.4 1.6 3.6E-05 43.3 18.2 121 61-196 7-127 (246)
152 COG5185 HEC1 Protein involved 95.3 3.2 6.9E-05 44.8 20.9 66 111-176 339-407 (622)
153 PF12329 TMF_DNA_bd: TATA elem 95.3 0.2 4.4E-06 40.8 9.7 67 79-146 4-70 (74)
154 PF10481 CENP-F_N: Cenp-F N-te 95.3 1.1 2.5E-05 45.0 16.4 75 124-198 61-135 (307)
155 PF04012 PspA_IM30: PspA/IM30 95.3 3 6.4E-05 40.2 21.5 46 43-88 28-73 (221)
156 PRK10476 multidrug resistance 95.3 1.8 4E-05 44.4 18.9 20 46-65 87-106 (346)
157 KOG1003 Actin filament-coating 95.2 3.1 6.7E-05 40.1 21.4 52 46-97 5-56 (205)
158 PF09789 DUF2353: Uncharacteri 95.2 4.5 9.8E-05 41.8 22.0 81 116-196 133-227 (319)
159 PF09730 BicD: Microtubule-ass 95.2 3.8 8.1E-05 46.7 22.2 80 117-196 98-180 (717)
160 COG0419 SbcC ATPase involved i 95.1 4.6 9.9E-05 47.2 23.7 79 115-193 360-438 (908)
161 TIGR03185 DNA_S_dndD DNA sulfu 95.1 1.4 3E-05 49.5 18.8 43 110-152 422-464 (650)
162 PRK10884 SH3 domain-containing 95.1 0.48 1E-05 45.9 13.2 24 42-65 90-113 (206)
163 PF13870 DUF4201: Domain of un 95.1 2.9 6.3E-05 39.1 22.0 110 110-223 43-152 (177)
164 COG2433 Uncharacterized conser 95.1 0.39 8.4E-06 52.9 13.6 12 260-271 584-595 (652)
165 PF07106 TBPIP: Tat binding pr 95.1 0.21 4.5E-06 46.4 10.3 74 44-117 71-153 (169)
166 PF00769 ERM: Ezrin/radixin/mo 95.0 2.3 5E-05 42.2 17.8 83 114-196 31-113 (246)
167 PF10146 zf-C4H2: Zinc finger- 94.9 1.7 3.6E-05 43.0 16.5 57 145-201 47-103 (230)
168 COG0419 SbcC ATPase involved i 94.9 4.6 9.9E-05 47.2 22.9 16 47-62 554-569 (908)
169 KOG0999 Microtubule-associated 94.8 7.5 0.00016 42.8 22.1 39 158-196 170-211 (772)
170 TIGR02680 conserved hypothetic 94.8 2 4.2E-05 52.4 20.1 156 43-199 228-395 (1353)
171 KOG1899 LAR transmembrane tyro 94.8 1.3 2.9E-05 49.0 16.7 144 40-198 106-250 (861)
172 PRK10361 DNA recombination pro 94.8 7.5 0.00016 42.3 24.2 63 74-140 61-123 (475)
173 PF14362 DUF4407: Domain of un 94.8 2.2 4.8E-05 43.1 17.6 20 204-223 257-276 (301)
174 PF13166 AAA_13: AAA domain 94.8 5.3 0.00011 44.9 22.3 15 369-383 633-647 (712)
175 KOG1853 LIS1-interacting prote 94.7 5.2 0.00011 40.0 21.6 98 47-151 29-126 (333)
176 KOG0946 ER-Golgi vesicle-tethe 94.7 3.3 7.2E-05 47.3 19.6 29 174-202 801-829 (970)
177 PF06818 Fez1: Fez1; InterPro 94.6 4.6 0.0001 39.1 18.9 40 43-82 15-54 (202)
178 KOG0804 Cytoplasmic Zn-finger 94.6 2 4.2E-05 46.0 16.9 71 112-185 378-448 (493)
179 PF10146 zf-C4H2: Zinc finger- 94.6 1.5 3.3E-05 43.2 15.3 52 143-194 52-103 (230)
180 TIGR03319 YmdA_YtgF conserved 94.6 3.8 8.2E-05 45.0 19.9 39 234-272 253-291 (514)
181 PF05483 SCP-1: Synaptonemal c 94.5 11 0.00023 42.6 22.8 12 261-272 711-722 (786)
182 TIGR02977 phageshock_pspA phag 94.4 5.3 0.00011 38.8 23.6 109 50-161 29-137 (219)
183 PRK12704 phosphodiesterase; Pr 94.4 4.3 9.2E-05 44.7 19.8 10 239-248 264-273 (520)
184 TIGR00998 8a0101 efflux pump m 94.4 5.2 0.00011 40.5 19.3 54 43-96 78-131 (334)
185 PF06818 Fez1: Fez1; InterPro 94.4 5.4 0.00012 38.7 19.9 92 53-145 11-102 (202)
186 TIGR02338 gimC_beta prefoldin, 94.3 1.1 2.4E-05 38.9 12.3 40 45-84 3-42 (110)
187 PF07106 TBPIP: Tat binding pr 94.3 0.25 5.4E-06 45.9 8.8 63 68-136 74-136 (169)
188 PF06008 Laminin_I: Laminin Do 94.3 6.2 0.00014 39.2 22.2 54 48-101 62-115 (264)
189 KOG0804 Cytoplasmic Zn-finger 94.2 3 6.5E-05 44.7 17.3 88 87-178 361-448 (493)
190 KOG4809 Rab6 GTPase-interactin 94.2 9.6 0.00021 41.9 21.2 39 43-81 241-279 (654)
191 KOG4673 Transcription factor T 94.1 13 0.00027 42.1 31.9 41 340-381 632-672 (961)
192 PRK03947 prefoldin subunit alp 94.1 1.4 3.1E-05 39.5 13.1 38 44-81 5-42 (140)
193 COG1382 GimC Prefoldin, chaper 94.1 1.6 3.5E-05 38.9 12.9 44 44-87 5-48 (119)
194 PF11932 DUF3450: Protein of u 94.0 3.9 8.5E-05 40.3 17.1 50 47-96 23-72 (251)
195 TIGR00634 recN DNA repair prot 94.0 5 0.00011 44.3 19.6 43 43-85 159-201 (563)
196 COG2433 Uncharacterized conser 94.0 1 2.2E-05 49.7 13.8 47 108-154 421-467 (652)
197 PF13166 AAA_13: AAA domain 94.0 6.3 0.00014 44.3 20.8 24 157-180 430-453 (712)
198 TIGR03017 EpsF chain length de 94.0 3.4 7.3E-05 43.7 17.6 145 44-193 214-363 (444)
199 PF05622 HOOK: HOOK protein; 93.9 0.016 3.4E-07 65.5 0.0 12 299-310 538-549 (713)
200 PF11559 ADIP: Afadin- and alp 93.9 3.1 6.7E-05 37.8 15.0 13 180-192 134-146 (151)
201 TIGR01010 BexC_CtrB_KpsE polys 93.9 4.7 0.0001 41.7 18.2 127 72-198 169-304 (362)
202 KOG0288 WD40 repeat protein Ti 93.9 3.6 7.7E-05 43.7 16.9 36 114-149 46-81 (459)
203 PF13514 AAA_27: AAA domain 93.8 5.6 0.00012 47.5 20.9 38 148-185 893-930 (1111)
204 PF06785 UPF0242: Uncharacteri 93.8 9 0.0002 39.8 19.3 123 67-189 79-218 (401)
205 PF14915 CCDC144C: CCDC144C pr 93.8 8.9 0.00019 39.2 21.2 54 50-103 142-195 (305)
206 PF05335 DUF745: Protein of un 93.8 6.6 0.00014 37.6 18.8 78 110-187 96-173 (188)
207 PRK09343 prefoldin subunit bet 93.8 1.8 3.8E-05 38.4 12.7 38 43-80 5-42 (121)
208 COG4477 EzrA Negative regulato 93.7 7.8 0.00017 42.5 19.5 21 109-129 316-336 (570)
209 PRK00106 hypothetical protein; 93.6 8 0.00017 42.7 19.9 38 234-271 274-311 (535)
210 PF09755 DUF2046: Uncharacteri 93.5 11 0.00023 38.9 23.5 31 48-78 23-53 (310)
211 PHA03332 membrane glycoprotein 93.2 2.9 6.2E-05 48.9 16.0 18 109-126 930-947 (1328)
212 KOG2991 Splicing regulator [RN 93.2 10 0.00022 38.1 21.2 44 152-195 258-301 (330)
213 PF10481 CENP-F_N: Cenp-F N-te 93.2 5 0.00011 40.5 15.9 36 150-185 94-129 (307)
214 PRK10698 phage shock protein P 93.2 9.1 0.0002 37.4 23.3 112 49-160 28-143 (222)
215 TIGR02971 heterocyst_DevB ABC 93.1 8.6 0.00019 38.9 18.3 26 45-70 55-80 (327)
216 PF01442 Apolipoprotein: Apoli 93.1 6.7 0.00015 35.7 22.6 19 52-70 5-23 (202)
217 PF01442 Apolipoprotein: Apoli 93.1 6.7 0.00015 35.6 25.3 42 284-325 134-175 (202)
218 PF10168 Nup88: Nuclear pore c 93.1 5.7 0.00012 45.4 18.4 41 87-128 579-619 (717)
219 PRK03947 prefoldin subunit alp 93.1 3.7 8.1E-05 36.8 13.9 39 51-89 5-43 (140)
220 PF13514 AAA_27: AAA domain 93.0 10 0.00022 45.4 21.3 39 45-83 736-774 (1111)
221 PF11570 E2R135: Coiled-coil r 93.0 3.1 6.6E-05 37.6 12.8 36 44-79 14-49 (136)
222 PF10498 IFT57: Intra-flagella 93.0 6.7 0.00015 41.2 17.5 122 73-198 220-347 (359)
223 PF14073 Cep57_CLD: Centrosome 93.0 8.5 0.00018 36.6 20.7 141 47-195 6-164 (178)
224 PF15254 CCDC14: Coiled-coil d 92.9 20 0.00043 41.1 21.6 59 141-199 491-549 (861)
225 PF02994 Transposase_22: L1 tr 92.8 0.36 7.8E-06 50.7 7.9 19 282-300 289-307 (370)
226 PRK15178 Vi polysaccharide exp 92.7 15 0.00032 39.7 19.8 150 51-202 222-388 (434)
227 KOG1937 Uncharacterized conser 92.6 17 0.00037 39.2 26.1 44 169-212 386-429 (521)
228 PRK04406 hypothetical protein; 92.5 1.1 2.3E-05 36.7 8.6 50 140-189 7-56 (75)
229 PF10498 IFT57: Intra-flagella 92.5 3.8 8.2E-05 43.0 14.8 8 180-187 336-343 (359)
230 PRK09841 cryptic autophosphory 92.2 8.1 0.00018 44.1 18.3 72 116-191 311-389 (726)
231 PRK10869 recombination and rep 92.2 9.9 0.00021 42.1 18.4 44 160-203 319-365 (553)
232 TIGR03794 NHPM_micro_HlyD NHPM 92.1 18 0.00039 38.2 22.0 24 43-66 94-117 (421)
233 PF05278 PEARLI-4: Arabidopsis 92.1 15 0.00032 37.2 17.9 64 141-204 190-253 (269)
234 COG1842 PspA Phage shock prote 92.0 13 0.00029 36.5 22.9 116 48-166 27-142 (225)
235 COG3206 GumC Uncharacterized p 92.0 14 0.00031 39.5 19.0 144 44-191 238-392 (458)
236 PF05557 MAD: Mitotic checkpoi 92.0 0.25 5.3E-06 56.1 5.9 57 43-99 341-397 (722)
237 PF15450 DUF4631: Domain of un 92.0 22 0.00048 39.0 20.9 43 90-133 333-375 (531)
238 TIGR02977 phageshock_pspA phag 92.0 13 0.00028 36.1 19.0 35 151-185 99-133 (219)
239 PF12761 End3: Actin cytoskele 91.9 1.3 2.8E-05 42.6 9.7 96 46-142 97-193 (195)
240 PF08647 BRE1: BRE1 E3 ubiquit 91.9 4.4 9.6E-05 34.4 12.1 58 78-136 15-72 (96)
241 PF04102 SlyX: SlyX; InterPro 91.9 0.91 2E-05 36.4 7.4 51 142-192 2-52 (69)
242 PRK02119 hypothetical protein; 91.9 1.1 2.5E-05 36.3 8.1 51 140-190 5-55 (73)
243 KOG1962 B-cell receptor-associ 91.9 2.1 4.5E-05 41.9 11.2 32 149-180 163-194 (216)
244 PF15294 Leu_zip: Leucine zipp 91.9 6.6 0.00014 39.8 15.1 47 41-87 128-174 (278)
245 PRK00106 hypothetical protein; 91.8 15 0.00033 40.6 19.1 12 373-384 375-386 (535)
246 KOG4809 Rab6 GTPase-interactin 91.8 14 0.00031 40.6 18.2 14 339-352 578-591 (654)
247 COG1730 GIM5 Predicted prefold 91.8 5.3 0.00012 36.8 13.2 27 45-71 6-32 (145)
248 COG1842 PspA Phage shock prote 91.7 14 0.00031 36.3 21.2 52 144-195 92-143 (225)
249 PRK09343 prefoldin subunit bet 91.7 7.8 0.00017 34.3 13.9 33 156-188 76-108 (121)
250 PF12329 TMF_DNA_bd: TATA elem 91.6 2.4 5.1E-05 34.6 9.7 18 87-104 5-22 (74)
251 PF09728 Taxilin: Myosin-like 91.5 18 0.0004 37.1 21.8 83 110-192 224-306 (309)
252 PF05266 DUF724: Protein of un 91.5 14 0.0003 35.5 17.0 69 125-193 112-180 (190)
253 TIGR02971 heterocyst_DevB ABC 91.4 17 0.00038 36.7 19.5 21 52-72 55-75 (327)
254 KOG0999 Microtubule-associated 91.3 27 0.00059 38.7 23.4 43 121-163 147-189 (772)
255 KOG0239 Kinesin (KAR3 subfamil 91.3 16 0.00035 41.5 19.1 69 121-189 225-293 (670)
256 PRK00295 hypothetical protein; 91.3 1.7 3.6E-05 34.9 8.3 50 142-191 3-52 (68)
257 PRK02793 phi X174 lysis protei 91.3 1.5 3.2E-05 35.6 8.1 50 141-190 5-54 (72)
258 TIGR00634 recN DNA repair prot 91.2 12 0.00027 41.3 17.9 15 110-124 302-316 (563)
259 PRK00736 hypothetical protein; 91.2 1.6 3.4E-05 35.1 8.1 49 142-190 3-51 (68)
260 PF05483 SCP-1: Synaptonemal c 91.1 32 0.00069 39.0 27.0 62 113-174 584-645 (786)
261 PF05384 DegS: Sensor protein 91.0 13 0.00029 34.7 21.5 75 115-189 76-150 (159)
262 PF05557 MAD: Mitotic checkpoi 91.0 0.065 1.4E-06 60.7 0.0 8 46-53 69-76 (722)
263 PRK10246 exonuclease subunit S 91.0 22 0.00048 42.4 20.8 27 157-183 828-854 (1047)
264 PF15397 DUF4618: Domain of un 91.0 19 0.00041 36.3 22.1 42 158-199 186-227 (258)
265 KOG2991 Splicing regulator [RN 90.9 19 0.00042 36.2 19.3 70 124-193 237-306 (330)
266 PF12777 MT: Microtubule-bindi 90.8 2.6 5.7E-05 43.6 11.5 63 114-176 240-302 (344)
267 COG4026 Uncharacterized protei 90.7 3 6.5E-05 41.0 10.9 70 113-182 139-208 (290)
268 PRK04325 hypothetical protein; 90.7 1.8 4E-05 35.2 8.2 50 141-190 6-55 (74)
269 PF11559 ADIP: Afadin- and alp 90.5 13 0.00029 33.7 17.3 11 186-196 133-143 (151)
270 PRK00846 hypothetical protein; 90.5 2.7 5.9E-05 34.7 9.0 53 140-192 9-61 (77)
271 cd00632 Prefoldin_beta Prefold 90.4 9.5 0.0002 32.7 12.8 10 55-64 9-18 (105)
272 KOG4302 Microtubule-associated 90.4 37 0.0008 38.5 21.1 48 38-85 96-143 (660)
273 TIGR02231 conserved hypothetic 90.3 4.6 0.0001 44.1 13.4 23 78-100 69-91 (525)
274 COG4026 Uncharacterized protei 90.2 2.8 6.1E-05 41.2 10.3 76 111-186 130-205 (290)
275 PF10805 DUF2730: Protein of u 90.2 2.3 5.1E-05 36.8 9.0 60 42-101 32-93 (106)
276 cd00632 Prefoldin_beta Prefold 90.2 4.4 9.5E-05 34.7 10.6 27 44-70 5-31 (105)
277 PF09787 Golgin_A5: Golgin sub 90.1 33 0.00072 37.6 21.4 27 117-143 215-241 (511)
278 PF14915 CCDC144C: CCDC144C pr 90.1 25 0.00053 36.1 22.1 23 114-136 219-241 (305)
279 KOG1937 Uncharacterized conser 90.0 32 0.00069 37.2 20.3 40 163-202 387-426 (521)
280 COG3096 MukB Uncharacterized p 89.9 29 0.00062 39.9 18.8 130 51-182 292-421 (1480)
281 PRK11519 tyrosine kinase; Prov 89.9 13 0.00028 42.4 17.1 44 141-188 343-386 (719)
282 TIGR01010 BexC_CtrB_KpsE polys 89.9 19 0.00041 37.2 17.1 27 68-94 172-198 (362)
283 KOG0962 DNA repair protein RAD 89.9 55 0.0012 39.8 22.5 11 39-49 166-176 (1294)
284 COG3206 GumC Uncharacterized p 89.9 8.6 0.00019 41.2 14.9 47 45-91 285-331 (458)
285 PF15254 CCDC14: Coiled-coil d 89.8 15 0.00034 41.9 16.9 151 47-198 389-555 (861)
286 PF08581 Tup_N: Tup N-terminal 89.5 11 0.00024 31.2 12.4 74 121-197 2-75 (79)
287 PRK03598 putative efflux pump 89.4 17 0.00037 36.9 16.1 22 44-65 80-101 (331)
288 KOG2264 Exostosin EXT1L [Signa 89.2 2.9 6.3E-05 46.0 10.4 72 125-196 81-152 (907)
289 PF06785 UPF0242: Uncharacteri 89.0 17 0.00037 37.8 15.3 33 69-101 74-106 (401)
290 PF13863 DUF4200: Domain of un 89.0 15 0.00032 32.1 17.8 33 57-89 12-44 (126)
291 PF10211 Ax_dynein_light: Axon 88.9 22 0.00048 33.9 15.5 45 42-86 30-76 (189)
292 PF05266 DUF724: Protein of un 88.8 10 0.00022 36.4 13.0 29 72-100 109-137 (190)
293 KOG4603 TBP-1 interacting prot 88.7 19 0.00042 34.1 14.2 19 46-64 80-98 (201)
294 PF14197 Cep57_CLD_2: Centroso 88.7 5.7 0.00012 32.0 9.4 23 116-138 40-62 (69)
295 PRK11519 tyrosine kinase; Prov 88.7 30 0.00065 39.5 18.8 6 233-238 463-468 (719)
296 TIGR03794 NHPM_micro_HlyD NHPM 88.6 36 0.00078 36.0 19.8 26 48-73 92-117 (421)
297 PF03962 Mnd1: Mnd1 family; I 88.5 17 0.00036 34.8 14.2 21 113-133 107-127 (188)
298 TIGR02338 gimC_beta prefoldin, 88.5 13 0.00028 32.2 12.4 30 56-85 7-36 (110)
299 PF04108 APG17: Autophagy prot 88.4 38 0.00083 36.1 23.2 47 166-212 354-400 (412)
300 KOG1899 LAR transmembrane tyro 88.3 13 0.00029 41.5 14.7 47 39-85 119-165 (861)
301 PF12072 DUF3552: Domain of un 88.3 25 0.00053 33.8 22.6 7 194-200 181-187 (201)
302 PF15066 CAGE1: Cancer-associa 88.3 42 0.00091 36.4 21.8 18 84-101 387-404 (527)
303 KOG0239 Kinesin (KAR3 subfamil 88.3 41 0.0009 38.3 19.3 122 59-185 175-296 (670)
304 PF05335 DUF745: Protein of un 88.3 25 0.00054 33.8 19.6 79 114-192 93-171 (188)
305 PF08172 CASP_C: CASP C termin 88.2 11 0.00025 37.5 13.3 34 139-172 95-128 (248)
306 KOG0249 LAR-interacting protei 88.2 31 0.00067 39.4 17.5 30 108-137 155-184 (916)
307 PF03148 Tektin: Tektin family 88.1 30 0.00065 36.6 17.1 27 114-140 270-296 (384)
308 PF02403 Seryl_tRNA_N: Seryl-t 88.1 9 0.0002 32.7 11.0 26 75-100 31-56 (108)
309 PF14282 FlxA: FlxA-like prote 88.0 4 8.8E-05 35.4 8.9 24 43-66 17-40 (106)
310 PF10212 TTKRSYEDQ: Predicted 87.6 49 0.0011 36.4 21.7 55 130-184 420-474 (518)
311 TIGR03495 phage_LysB phage lys 87.5 21 0.00045 32.6 13.4 76 46-136 20-95 (135)
312 PF09787 Golgin_A5: Golgin sub 87.5 18 0.00038 39.7 15.5 38 45-82 274-311 (511)
313 PF15290 Syntaphilin: Golgi-lo 87.4 29 0.00062 35.3 15.4 29 72-100 74-102 (305)
314 PF05008 V-SNARE: Vesicle tran 87.3 11 0.00024 30.2 10.6 58 69-133 21-78 (79)
315 PF04375 HemX: HemX; InterPro 87.3 37 0.00079 35.7 17.2 25 45-69 53-77 (372)
316 KOG2264 Exostosin EXT1L [Signa 87.2 5 0.00011 44.3 10.7 69 130-198 79-147 (907)
317 COG0497 RecN ATPase involved i 87.2 51 0.0011 36.7 18.6 65 139-203 299-366 (557)
318 PF07111 HCR: Alpha helical co 87.1 55 0.0012 37.3 18.8 87 110-196 191-287 (739)
319 PRK04406 hypothetical protein; 87.1 5.6 0.00012 32.6 8.6 46 148-193 8-53 (75)
320 PRK15396 murein lipoprotein; P 87.0 7.9 0.00017 32.0 9.5 25 46-70 26-50 (78)
321 PF05010 TACC: Transforming ac 86.9 32 0.00069 33.5 26.0 51 110-160 84-134 (207)
322 PRK10246 exonuclease subunit S 86.8 78 0.0017 37.9 28.5 50 44-93 529-578 (1047)
323 PF09403 FadA: Adhesion protei 86.6 20 0.00044 32.3 12.7 20 44-63 26-45 (126)
324 PF14282 FlxA: FlxA-like prote 86.6 6.1 0.00013 34.3 9.2 28 108-135 50-77 (106)
325 TIGR00998 8a0101 efflux pump m 86.6 38 0.00083 34.1 16.8 30 48-77 76-105 (334)
326 KOG0288 WD40 repeat protein Ti 86.5 33 0.00071 36.7 15.9 58 43-100 11-68 (459)
327 PRK15422 septal ring assembly 86.5 14 0.00031 30.6 10.6 51 124-174 19-69 (79)
328 TIGR02231 conserved hypothetic 86.5 12 0.00026 40.9 13.5 35 70-104 68-102 (525)
329 PF02050 FliJ: Flagellar FliJ 86.4 18 0.00039 30.1 16.9 22 78-99 17-38 (123)
330 PRK10476 multidrug resistance 86.3 36 0.00077 34.9 16.3 26 49-74 83-108 (346)
331 PRK10869 recombination and rep 86.3 44 0.00094 37.1 17.8 16 110-125 297-312 (553)
332 PF10205 KLRAQ: Predicted coil 86.2 12 0.00026 32.5 10.5 44 75-133 28-71 (102)
333 PF07851 TMPIT: TMPIT-like pro 85.9 9.6 0.00021 39.6 11.6 57 45-101 4-60 (330)
334 PF06248 Zw10: Centromere/kine 85.8 63 0.0014 35.9 19.2 22 282-303 275-296 (593)
335 COG3352 FlaC Putative archaeal 85.8 12 0.00026 34.7 10.9 95 45-139 44-138 (157)
336 KOG4460 Nuclear pore complex, 85.7 64 0.0014 35.9 19.0 14 121-134 667-680 (741)
337 PF10212 TTKRSYEDQ: Predicted 85.7 38 0.00081 37.3 16.4 27 151-177 487-513 (518)
338 PF15450 DUF4631: Domain of un 85.7 62 0.0013 35.7 20.2 12 88-99 359-370 (531)
339 PF11570 E2R135: Coiled-coil r 85.7 20 0.00043 32.4 11.9 49 43-91 6-54 (136)
340 TIGR00293 prefoldin, archaeal 85.6 7.1 0.00015 34.2 9.3 24 113-136 90-113 (126)
341 COG2900 SlyX Uncharacterized p 85.5 6.9 0.00015 31.9 8.1 52 141-192 5-56 (72)
342 PF07889 DUF1664: Protein of u 85.5 27 0.0006 31.4 13.1 13 61-73 45-57 (126)
343 PRK11546 zraP zinc resistance 85.4 14 0.00031 33.9 11.3 34 45-78 47-80 (143)
344 TIGR00293 prefoldin, archaeal 85.2 7.2 0.00016 34.2 9.2 28 116-143 86-113 (126)
345 KOG0982 Centrosomal protein Nu 85.2 59 0.0013 35.0 21.2 56 110-165 305-360 (502)
346 PF14197 Cep57_CLD_2: Centroso 85.2 15 0.00033 29.6 10.1 32 142-173 31-62 (69)
347 COG4477 EzrA Negative regulato 85.0 67 0.0015 35.5 25.7 23 41-63 251-273 (570)
348 PF14712 Snapin_Pallidin: Snap 85.0 13 0.00029 30.7 10.2 38 43-80 12-49 (92)
349 PF09486 HrpB7: Bacterial type 84.6 35 0.00076 31.9 20.2 98 50-147 13-110 (158)
350 PLN03229 acetyl-coenzyme A car 84.6 75 0.0016 36.6 18.6 8 44-51 485-492 (762)
351 PF14362 DUF4407: Domain of un 84.6 46 0.001 33.5 15.9 20 116-135 142-161 (301)
352 KOG2391 Vacuolar sorting prote 84.5 8.3 0.00018 40.1 10.3 57 113-169 222-278 (365)
353 PF07851 TMPIT: TMPIT-like pro 84.4 12 0.00026 39.0 11.5 27 356-382 217-243 (330)
354 KOG0249 LAR-interacting protei 84.3 53 0.0011 37.6 16.9 18 111-128 165-182 (916)
355 PF08702 Fib_alpha: Fibrinogen 84.3 33 0.00073 31.5 16.9 38 147-184 93-130 (146)
356 PF05791 Bacillus_HBL: Bacillu 84.3 27 0.00058 33.1 13.1 31 110-140 104-134 (184)
357 PF06005 DUF904: Protein of un 84.3 21 0.00045 29.0 11.5 20 78-97 9-28 (72)
358 PF06120 Phage_HK97_TLTM: Tail 84.1 55 0.0012 33.7 19.7 10 45-54 55-64 (301)
359 PF07989 Microtub_assoc: Micro 84.0 13 0.00029 30.4 9.4 28 120-147 4-31 (75)
360 PF04102 SlyX: SlyX; InterPro 83.8 6.9 0.00015 31.3 7.6 47 150-196 3-49 (69)
361 cd00890 Prefoldin Prefoldin is 83.7 20 0.00044 31.1 11.3 19 64-82 11-29 (129)
362 PF01920 Prefoldin_2: Prefoldi 83.7 24 0.00053 29.4 12.4 16 117-132 13-28 (106)
363 PRK02119 hypothetical protein; 83.6 9.2 0.0002 31.1 8.3 49 147-195 5-53 (73)
364 KOG0998 Synaptic vesicle prote 83.5 2.8 6E-05 48.7 7.3 59 43-101 433-491 (847)
365 PF15456 Uds1: Up-regulated Du 83.1 27 0.00058 31.3 11.8 20 177-196 86-105 (124)
366 PF07989 Microtub_assoc: Micro 83.0 16 0.00034 30.0 9.4 20 117-136 44-63 (75)
367 PF13747 DUF4164: Domain of un 82.8 28 0.0006 29.4 12.2 45 119-163 35-79 (89)
368 PF03904 DUF334: Domain of unk 82.8 52 0.0011 32.5 16.5 12 125-136 99-110 (230)
369 PF06103 DUF948: Bacterial pro 82.8 26 0.00056 29.0 11.0 55 45-99 26-80 (90)
370 KOG2077 JNK/SAPK-associated pr 82.7 11 0.00025 41.6 10.9 82 120-201 298-379 (832)
371 PF07058 Myosin_HC-like: Myosi 82.6 18 0.00039 37.2 11.6 34 167-200 61-94 (351)
372 cd00890 Prefoldin Prefoldin is 82.5 31 0.00068 29.8 12.2 33 50-82 4-36 (129)
373 COG3352 FlaC Putative archaeal 82.5 33 0.00072 31.9 12.3 61 108-168 43-103 (157)
374 KOG2751 Beclin-like protein [S 82.5 59 0.0013 35.0 15.8 21 410-430 425-445 (447)
375 PF06476 DUF1090: Protein of u 82.4 20 0.00044 31.6 10.7 36 50-101 22-57 (115)
376 PRK00409 recombination and DNA 82.3 35 0.00075 39.6 15.4 22 371-392 746-767 (782)
377 PRK00295 hypothetical protein; 82.1 11 0.00025 30.1 8.2 48 149-196 3-50 (68)
378 PF07798 DUF1640: Protein of u 82.1 45 0.00097 31.3 20.5 23 78-100 49-71 (177)
379 PF03148 Tektin: Tektin family 81.9 74 0.0016 33.6 21.5 158 39-196 117-303 (384)
380 KOG4603 TBP-1 interacting prot 81.9 11 0.00024 35.7 9.2 23 114-136 121-143 (201)
381 PF09738 DUF2051: Double stran 81.7 49 0.0011 34.1 14.6 9 204-212 171-179 (302)
382 PRK00286 xseA exodeoxyribonucl 81.7 37 0.0008 36.2 14.5 20 44-63 259-278 (438)
383 PF06705 SF-assemblin: SF-asse 81.6 57 0.0012 32.1 23.3 9 50-58 39-47 (247)
384 PF10205 KLRAQ: Predicted coil 81.5 35 0.00076 29.7 11.9 67 116-182 5-71 (102)
385 PF05529 Bap31: B-cell recepto 81.3 12 0.00027 35.3 9.6 14 121-134 159-172 (192)
386 KOG0982 Centrosomal protein Nu 81.3 84 0.0018 33.9 19.3 20 43-62 248-267 (502)
387 PRK04325 hypothetical protein; 81.3 12 0.00027 30.4 8.3 50 147-196 5-54 (74)
388 PF02403 Seryl_tRNA_N: Seryl-t 81.2 18 0.0004 30.8 9.8 15 169-183 78-92 (108)
389 PRK14011 prefoldin subunit alp 81.0 44 0.00095 30.7 12.7 33 57-89 8-40 (144)
390 PF09789 DUF2353: Uncharacteri 80.4 77 0.0017 32.9 20.8 28 113-140 76-103 (319)
391 PF10211 Ax_dynein_light: Axon 80.4 55 0.0012 31.2 20.8 30 119-148 123-152 (189)
392 KOG4302 Microtubule-associated 80.3 1.1E+02 0.0025 34.8 19.7 13 269-281 255-267 (660)
393 KOG2751 Beclin-like protein [S 80.3 44 0.00095 36.0 13.9 41 133-173 193-233 (447)
394 PF02050 FliJ: Flagellar FliJ 80.2 33 0.00071 28.5 16.5 9 151-159 80-88 (123)
395 KOG1853 LIS1-interacting prote 80.1 70 0.0015 32.3 21.6 10 189-198 167-176 (333)
396 COG4487 Uncharacterized protei 80.0 94 0.002 33.6 20.1 29 354-382 393-421 (438)
397 TIGR01069 mutS2 MutS2 family p 80.0 33 0.00072 39.6 14.2 23 371-393 735-757 (771)
398 COG5283 Phage-related tail pro 80.0 1.3E+02 0.0029 36.3 18.9 116 54-177 24-139 (1213)
399 KOG2685 Cystoskeletal protein 79.9 39 0.00084 36.2 13.4 38 152-189 352-389 (421)
400 PF04912 Dynamitin: Dynamitin 79.8 85 0.0018 33.1 19.3 158 18-178 218-388 (388)
401 PF08172 CASP_C: CASP C termin 79.8 33 0.00071 34.3 12.4 43 156-198 84-126 (248)
402 PRK00736 hypothetical protein; 79.6 14 0.00029 29.7 7.9 48 149-196 3-50 (68)
403 cd00584 Prefoldin_alpha Prefol 79.6 42 0.00092 29.4 12.6 11 89-99 8-18 (129)
404 PF10458 Val_tRNA-synt_C: Valy 79.6 11 0.00024 29.7 7.3 54 81-134 5-64 (66)
405 PF15294 Leu_zip: Leucine zipp 79.5 76 0.0017 32.3 20.3 73 121-193 130-211 (278)
406 PRK11020 hypothetical protein; 79.5 15 0.00033 32.4 8.7 24 43-66 3-26 (118)
407 PF15456 Uds1: Up-regulated Du 79.3 32 0.00068 30.9 10.9 19 45-63 22-40 (124)
408 KOG4438 Centromere-associated 79.3 97 0.0021 33.4 30.6 48 47-94 147-194 (446)
409 TIGR03752 conj_TIGR03752 integ 79.0 29 0.00063 37.8 12.4 36 141-176 106-141 (472)
410 PRK02793 phi X174 lysis protei 78.9 16 0.00036 29.5 8.2 49 148-196 5-53 (72)
411 PRK13729 conjugal transfer pil 78.7 9.8 0.00021 41.3 8.8 16 114-129 74-89 (475)
412 PF06810 Phage_GP20: Phage min 78.6 27 0.00058 32.4 10.6 29 114-142 18-46 (155)
413 PRK10361 DNA recombination pro 78.2 1.1E+02 0.0024 33.5 19.9 132 64-202 58-195 (475)
414 PF03915 AIP3: Actin interacti 78.0 11 0.00025 40.4 9.1 175 35-213 61-280 (424)
415 COG3074 Uncharacterized protei 78.0 36 0.00078 27.7 10.6 24 77-100 8-31 (79)
416 smart00806 AIP3 Actin interact 77.9 1.1E+02 0.0023 33.1 18.1 89 110-198 174-269 (426)
417 PRK12705 hypothetical protein; 77.6 1.2E+02 0.0026 33.5 17.8 112 82-199 25-136 (508)
418 KOG4593 Mitotic checkpoint pro 77.5 1.4E+02 0.003 34.2 22.3 18 364-381 556-573 (716)
419 TIGR03495 phage_LysB phage lys 77.5 51 0.0011 30.1 11.8 10 123-132 47-56 (135)
420 TIGR03545 conserved hypothetic 77.3 50 0.0011 36.8 14.0 13 229-241 300-312 (555)
421 PF05103 DivIVA: DivIVA protei 77.3 1.6 3.4E-05 38.3 2.1 46 50-95 23-68 (131)
422 COG3096 MukB Uncharacterized p 77.2 1.1E+02 0.0024 35.5 16.4 13 50-62 989-1001(1480)
423 PRK13729 conjugal transfer pil 77.2 12 0.00026 40.7 8.9 12 174-185 106-117 (475)
424 KOG1850 Myosin-like coiled-coi 77.1 98 0.0021 32.3 22.3 85 116-200 236-320 (391)
425 PRK06975 bifunctional uroporph 77.1 77 0.0017 36.0 15.8 23 44-66 345-367 (656)
426 PF05531 NPV_P10: Nucleopolyhe 76.7 11 0.00023 31.1 6.5 25 47-71 6-30 (75)
427 KOG3433 Protein involved in me 76.7 58 0.0013 31.3 12.2 90 72-162 73-162 (203)
428 PF06160 EzrA: Septation ring 76.6 1.3E+02 0.0028 33.4 36.1 40 347-386 300-339 (560)
429 TIGR02473 flagell_FliJ flagell 76.4 53 0.0011 28.8 18.6 49 120-168 65-113 (141)
430 PRK00846 hypothetical protein; 76.3 30 0.00066 28.6 9.1 54 145-198 7-60 (77)
431 PHA03332 membrane glycoprotein 76.3 1.1E+02 0.0023 36.7 16.4 57 75-135 893-949 (1328)
432 KOG0244 Kinesin-like protein [ 76.1 1.6E+02 0.0035 34.7 17.8 10 245-254 652-661 (913)
433 COG1729 Uncharacterized protei 75.9 10 0.00022 38.3 7.5 21 46-66 57-77 (262)
434 PF10368 YkyA: Putative cell-w 75.9 79 0.0017 30.6 18.2 24 45-68 32-55 (204)
435 PF09738 DUF2051: Double stran 75.5 84 0.0018 32.4 14.2 25 164-188 139-163 (302)
436 PRK00409 recombination and DNA 75.4 65 0.0014 37.4 14.8 22 141-162 538-559 (782)
437 TIGR01069 mutS2 MutS2 family p 75.3 58 0.0013 37.7 14.4 16 318-333 703-718 (771)
438 PF10267 Tmemb_cc2: Predicted 75.2 1.2E+02 0.0027 32.4 16.6 16 177-192 303-318 (395)
439 PF08826 DMPK_coil: DMPK coile 74.9 25 0.00055 27.8 7.9 22 142-163 30-51 (61)
440 PRK01203 prefoldin subunit alp 74.8 30 0.00066 31.3 9.6 35 116-150 87-121 (130)
441 KOG3091 Nuclear pore complex, 74.5 40 0.00087 36.8 11.9 104 65-180 340-443 (508)
442 PF09731 Mitofilin: Mitochondr 74.5 1.4E+02 0.0031 32.9 28.2 24 43-66 249-272 (582)
443 PF12761 End3: Actin cytoskele 74.5 15 0.00034 35.4 8.0 96 39-135 97-193 (195)
444 KOG2077 JNK/SAPK-associated pr 74.4 92 0.002 34.9 14.6 106 88-196 330-435 (832)
445 PF05008 V-SNARE: Vesicle tran 74.3 43 0.00093 26.8 9.9 12 89-100 5-16 (79)
446 PLN02320 seryl-tRNA synthetase 74.0 58 0.0013 35.9 13.2 55 47-103 69-123 (502)
447 KOG0240 Kinesin (SMY1 subfamil 73.5 1.6E+02 0.0035 33.0 18.3 39 108-146 413-451 (607)
448 TIGR01541 tape_meas_lam_C phag 73.2 1.2E+02 0.0027 31.5 22.6 180 88-382 2-181 (332)
449 PF06632 XRCC4: DNA double-str 73.2 96 0.0021 32.5 14.1 84 111-194 132-216 (342)
450 cd00584 Prefoldin_alpha Prefol 73.1 64 0.0014 28.3 13.4 88 112-199 2-128 (129)
451 COG1566 EmrA Multidrug resista 72.9 1.2E+02 0.0026 32.0 14.8 115 51-168 90-207 (352)
452 PF15066 CAGE1: Cancer-associa 72.8 1.5E+02 0.0033 32.4 21.3 156 45-201 348-507 (527)
453 PF10458 Val_tRNA-synt_C: Valy 72.7 35 0.00075 26.9 8.5 52 120-171 1-66 (66)
454 TIGR02132 phaR_Bmeg polyhydrox 72.6 71 0.0015 30.6 11.7 96 109-204 79-175 (189)
455 PF05377 FlaC_arch: Flagella a 72.6 15 0.00033 28.4 6.1 51 46-96 1-51 (55)
456 PRK05431 seryl-tRNA synthetase 72.6 48 0.001 35.6 12.1 89 54-142 4-99 (425)
457 KOG1760 Molecular chaperone Pr 71.9 74 0.0016 28.7 11.0 80 116-195 23-118 (131)
458 PF10779 XhlA: Haemolysin XhlA 71.9 19 0.00042 28.8 6.9 51 47-97 1-51 (71)
459 PF13805 Pil1: Eisosome compon 71.9 1.2E+02 0.0026 30.9 17.0 109 45-153 96-215 (271)
460 PF10046 BLOC1_2: Biogenesis o 71.9 62 0.0013 27.6 12.4 88 64-163 12-99 (99)
461 PF10779 XhlA: Haemolysin XhlA 71.4 17 0.00036 29.1 6.4 48 54-101 1-48 (71)
462 KOG4657 Uncharacterized conser 71.1 1.1E+02 0.0025 30.3 16.5 108 91-198 19-126 (246)
463 cd07648 F-BAR_FCHO The F-BAR ( 71.0 1.1E+02 0.0024 30.1 19.7 142 41-187 56-197 (261)
464 PF07544 Med9: RNA polymerase 70.9 17 0.00037 30.1 6.5 54 43-96 26-82 (83)
465 TIGR02894 DNA_bind_RsfA transc 70.9 64 0.0014 30.3 10.9 75 91-174 81-155 (161)
466 KOG0811 SNARE protein PEP12/VA 70.7 1.3E+02 0.0027 30.6 20.5 161 39-200 52-236 (269)
467 PF04871 Uso1_p115_C: Uso1 / p 70.6 83 0.0018 28.5 15.4 113 91-203 2-115 (136)
468 PF04912 Dynamitin: Dynamitin 70.6 1.5E+02 0.0032 31.3 20.7 157 45-202 209-387 (388)
469 KOG0244 Kinesin-like protein [ 70.6 1.4E+02 0.003 35.1 15.7 141 52-196 467-607 (913)
470 TIGR00414 serS seryl-tRNA synt 70.3 55 0.0012 35.0 12.0 96 47-142 4-102 (418)
471 COG3879 Uncharacterized protei 70.1 20 0.00044 35.8 7.9 89 1-91 13-107 (247)
472 KOG4460 Nuclear pore complex, 69.9 1.9E+02 0.0041 32.4 16.8 119 71-190 572-701 (741)
473 PF03961 DUF342: Protein of un 69.8 28 0.0006 37.4 9.7 78 113-191 331-408 (451)
474 PRK15178 Vi polysaccharide exp 69.7 1.7E+02 0.0037 31.7 17.0 131 43-174 247-385 (434)
475 PF07227 DUF1423: Protein of u 69.6 97 0.0021 33.6 13.3 123 54-184 317-445 (446)
476 PF05700 BCAS2: Breast carcino 69.3 1.2E+02 0.0025 29.6 18.3 116 75-194 99-218 (221)
477 TIGR00833 actII Transport prot 69.1 2.4E+02 0.0052 33.2 20.6 140 43-186 475-649 (910)
478 PF08581 Tup_N: Tup N-terminal 69.1 65 0.0014 26.7 12.2 78 127-207 1-78 (79)
479 PRK09973 putative outer membra 69.0 22 0.00048 30.0 6.8 46 81-127 25-70 (85)
480 PF11180 DUF2968: Protein of u 68.9 1.1E+02 0.0025 29.4 14.4 95 116-212 98-192 (192)
481 PF05791 Bacillus_HBL: Bacillu 68.6 1.1E+02 0.0023 29.0 14.2 113 75-190 68-181 (184)
482 PF04711 ApoA-II: Apolipoprote 68.6 9.9 0.00021 31.0 4.4 62 310-371 7-73 (76)
483 PLN02939 transferase, transfer 68.6 2.6E+02 0.0057 33.4 23.3 183 41-225 222-427 (977)
484 PF14817 HAUS5: HAUS augmin-li 68.5 72 0.0016 36.1 12.8 85 45-130 79-163 (632)
485 PRK03598 putative efflux pump 68.4 1.4E+02 0.0031 30.3 17.5 118 76-196 77-202 (331)
486 COG2882 FliJ Flagellar biosynt 68.0 1E+02 0.0022 28.5 18.5 127 41-183 5-131 (148)
487 KOG3850 Predicted membrane pro 67.7 1.8E+02 0.0038 31.2 16.3 109 42-171 264-373 (455)
488 KOG0998 Synaptic vesicle prote 67.5 17 0.00036 42.5 7.8 147 46-193 429-575 (847)
489 PF14257 DUF4349: Domain of un 67.5 30 0.00064 34.3 8.7 69 100-168 123-193 (262)
490 PF11853 DUF3373: Protein of u 67.3 8.7 0.00019 41.9 5.1 59 5-81 2-60 (489)
491 PF15290 Syntaphilin: Golgi-lo 67.1 1.5E+02 0.0034 30.3 15.5 111 61-186 63-173 (305)
492 PF06717 DUF1202: Protein of u 67.1 1.6E+02 0.0034 30.3 15.3 119 62-180 134-305 (308)
493 PF06476 DUF1090: Protein of u 67.0 91 0.002 27.6 13.7 113 12-176 2-114 (115)
494 TIGR00237 xseA exodeoxyribonuc 66.8 1.4E+02 0.003 32.1 14.2 150 21-170 231-386 (432)
495 PF06248 Zw10: Centromere/kine 66.6 2.2E+02 0.0047 31.7 20.5 159 33-197 2-168 (593)
496 PRK00888 ftsB cell division pr 66.6 31 0.00066 29.9 7.5 61 5-80 2-62 (105)
497 PRK09973 putative outer membra 66.5 58 0.0013 27.5 8.7 64 10-89 5-68 (85)
498 COG4717 Uncharacterized conser 66.4 2.7E+02 0.0059 32.8 20.0 150 45-194 696-854 (984)
499 PRK10780 periplasmic chaperone 66.3 1.1E+02 0.0024 28.2 12.9 123 5-127 3-134 (165)
500 COG4694 Uncharacterized protei 66.3 2.1E+02 0.0046 32.2 15.2 110 41-162 388-498 (758)
No 1
>PRK11637 AmiB activator; Provisional
Probab=99.19 E-value=1.3e-08 Score=107.48 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (455)
Q Consensus 140 eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq 192 (455)
.+++.+..+++....+.+..++.|+....+++..+.+++...+.++..|.+++
T Consensus 201 ~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 201 YEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555666666666666665555544
No 2
>PRK11637 AmiB activator; Provisional
Probab=98.79 E-value=1.5e-06 Score=91.82 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh
Q 012833 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELT 203 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei~ 203 (455)
++.+.+..+.+...+.+++.++.+++....+++.+..+|+....+.+..+..++.+++..+.++..++.+...+...|.
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555666666666777777777777777777777777777777777777666666666655554443
No 3
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=8.5e-06 Score=80.85 Aligned_cols=151 Identities=19% Similarity=0.253 Sum_probs=87.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------------
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN--------------- 106 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~--------------- 106 (455)
.+..+..++..+|+.|..+++++.+++++.+.++.+.+..|.+++++|.++.+.|.+.+.....-
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yid 121 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYID 121 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34555556667777777777777777777777777777777777777777777765544322110
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 107 ---AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV 183 (455)
Q Consensus 107 ---~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~ 183 (455)
..+.+.+.-.|+.-+..=++--++.++.+..+...|+.....++.+.+.+.....+++.....++.+..+++.-+..
T Consensus 122 vil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~ 201 (265)
T COG3883 122 VILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAA 201 (265)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11134455556666666666667777777777776666655555555555554444444444444444444444444
Q ss_pred HHHHHHHHH
Q 012833 184 AEEEMMRAK 192 (455)
Q Consensus 184 lEeeL~kaq 192 (455)
+......+.
T Consensus 202 ~aa~~a~~~ 210 (265)
T COG3883 202 LAAKEASAL 210 (265)
T ss_pred HHHHHHHhH
Confidence 433333333
No 4
>PRK09039 hypothetical protein; Validated
Probab=98.45 E-value=5.4e-05 Score=78.28 Aligned_cols=161 Identities=24% Similarity=0.285 Sum_probs=85.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhccCCCCCCCccCccCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 012833 4 SKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ 83 (455)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~ 83 (455)
+-||+..+|++.||..+.+. +..+++..+.+|++++++|.++..-+.--......++..|.
T Consensus 24 ~~ll~~~~f~l~~f~~~q~f-------------------Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~ 84 (343)
T PRK09039 24 STLLLVIMFLLTVFVVAQFF-------------------LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVA 84 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45666666665566553332 33456666677777777777666555444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 84 DKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (455)
Q Consensus 84 e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeL 163 (455)
+....+..++..-+.++.-... ..+....++.++..+..++...+........++..|..+...++.++..++..++..
T Consensus 85 ~l~~~l~~a~~~r~~Le~~~~~-~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 85 NLRASLSAAEAERSRLQALLAE-LAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444432211 011122444555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012833 164 QKINDEQKSKIRKTERALKVA 184 (455)
Q Consensus 164 ek~~eEqekkI~elE~~Lq~l 184 (455)
+....+++.+|++++.+|+.+
T Consensus 164 e~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 164 EKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444
No 5
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.43 E-value=5.8e-05 Score=74.16 Aligned_cols=67 Identities=7% Similarity=0.226 Sum_probs=53.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA 108 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~ 108 (455)
.+.+.++..+..+.+++.+++.++..+.++..++.++++++...+..|.++..+++..+.+++.+++
T Consensus 21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~ 87 (239)
T COG1579 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD 87 (239)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3456666677778888888888888888888888888888888888888888888888888766533
No 6
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.42 E-value=5.5e-05 Score=69.00 Aligned_cols=135 Identities=24% Similarity=0.359 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe 122 (455)
++.+.++...+...++.++..++++...++.+|.++...+..++.+|..++.++........ ...........|+
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le-----e~~~~~~~~E~l~ 79 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE-----ESEKRKSNAEQLN 79 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHhHHHHH
Confidence 34444555555555555555555555555555555555555555555555555554433221 1122222333555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (455)
Q Consensus 123 ~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq 182 (455)
..|+-|+.+++.....+.....++.+++.....++.++..|+...+..+.+++++..++.
T Consensus 80 rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 556666666666655555555555555555555555555555555555555555555444
No 7
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.36 E-value=0.00013 Score=76.63 Aligned_cols=82 Identities=17% Similarity=0.283 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Q 012833 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (455)
Q Consensus 123 ~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei 202 (455)
.+++.|.+.+..+......++++..++...+.+...+...+...+.+.++...+++..+..-+..++.+......+..+|
T Consensus 161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~I 240 (420)
T COG4942 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34666677777777777777777777777777777778888888888888888888888888877777777777776666
Q ss_pred hh
Q 012833 203 TE 204 (455)
Q Consensus 203 ~~ 204 (455)
+.
T Consensus 241 as 242 (420)
T COG4942 241 AS 242 (420)
T ss_pred HH
Confidence 54
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.35 E-value=8.4e-05 Score=86.48 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSL 57 (455)
Q Consensus 45 ~eL~~lr~kI~~L 57 (455)
.++..++.++..+
T Consensus 294 ~~~~~~~~~~~~~ 306 (1164)
T TIGR02169 294 EKIGELEAEIASL 306 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 9
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.28 E-value=0.00015 Score=66.09 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
++.++.+.+......++++.+++...+...+++..|..++..+..++.+|+.+
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKL 54 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544444444444444444444444444444
No 10
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.21 E-value=0.00011 Score=71.97 Aligned_cols=149 Identities=23% Similarity=0.357 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKES 132 (455)
Q Consensus 53 kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeL 132 (455)
|+..++.++++.+..+......++..+....+.+..+.+|+.+|..+......+ ++.+..+..++..++...+.....+
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~-eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERA-EERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666666666666665544432 3334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Q 012833 133 EKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (455)
Q Consensus 133 E~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei 202 (455)
..+.......+.++..++.++.+.....++.....++...++..++..+..++.....++.....+..++
T Consensus 81 k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 81 KVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444444444444333333
No 11
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.15 E-value=0.0016 Score=64.85 Aligned_cols=156 Identities=17% Similarity=0.234 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-------
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA------- 116 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~------- 116 (455)
..+|+++..+...++.+|+.+..+|++....+++++..|.+...+|..++.+|+.+...+.. .+++..-..
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~--r~~~l~~raRAmq~nG 114 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE--RQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcC
Confidence 34555555556666666666666666666666666666666666666666666555444332 111111111
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 117 -------------RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV 183 (455)
Q Consensus 117 -------------~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~ 183 (455)
-++++=.++..+...++..+.-++.+......++..-..++.+++.|..-..+++.+...|+.+...
T Consensus 115 ~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e 194 (265)
T COG3883 115 TATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAE 194 (265)
T ss_pred ChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233334555566666666777777778888888888888888888888888888888888777777
Q ss_pred HHHHHHHHHHHHhhhhHh
Q 012833 184 AEEEMMRAKFEATSRSKE 201 (455)
Q Consensus 184 lEeeL~kaq~E~~~~a~e 201 (455)
.+.-+..+..+......+
T Consensus 195 ~~~l~~~~aa~~a~~~~e 212 (265)
T COG3883 195 KNALIAALAAKEASALGE 212 (265)
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 777777666655544333
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.12 E-value=0.0079 Score=69.00 Aligned_cols=138 Identities=22% Similarity=0.387 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~q 124 (455)
.-++.++..+..+...+.+++.++++....+..++..+. ....+..++..++.++..+.. ..+++.....++..++++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~-~~~~l~~l~~~~~~l~~~~~~-~~e~le~~~~~~~~l~~e 545 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVE-AEDRIERLEERREDLEELIAE-RRETIEEKRERAEELRER 545 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHH
Confidence 445566677777777777777777776666666555433 355566666666666554322 234555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lE 185 (455)
+..|+..++........+++...++..++.++..++.+++..+..++ .+.++..++..++
T Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~ 605 (880)
T PRK02224 546 AAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAE 605 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 66666666555554444444444444444444444444444444333 2333333333333
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.06 E-value=0.00053 Score=74.32 Aligned_cols=88 Identities=18% Similarity=0.227 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNLKKESE---KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~LkkeLE---~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEee 187 (455)
+..+++++.+++.++..+...+. ....+...+..+..+++..+.+....++++......++..+.+++......+.+
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~ 380 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEE 380 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Confidence 33444444444444444433333 222222233333444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHhhh
Q 012833 188 MMRAKFEATSR 198 (455)
Q Consensus 188 L~kaq~E~~~~ 198 (455)
+.++..+....
T Consensus 381 l~~l~~~l~~~ 391 (562)
T PHA02562 381 LAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 14
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.02 E-value=0.00069 Score=66.48 Aligned_cols=149 Identities=21% Similarity=0.344 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe 126 (455)
+..++.+++..+.++......++.........+..+...+..|..+..++...+.....+ +.++..+.....+.+....
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~-~~kL~~~e~~~de~er~~k 81 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEA-TEKLEEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHH-HHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555555554444332 4444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 127 ~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
.|+.........+..++.++.++.....+...+.++....+...+..+...+.+...++..+..++.+..
T Consensus 82 ~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 82 VLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 4444444444444444444444444333333333333333333333333333333333333333333333
No 15
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.02 E-value=0.0017 Score=64.03 Aligned_cols=8 Identities=25% Similarity=0.327 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 012833 115 HARADELE 122 (455)
Q Consensus 115 e~~i~eLe 122 (455)
++++..++
T Consensus 72 r~r~~~~e 79 (239)
T COG1579 72 RERIKRAE 79 (239)
T ss_pred HHHHHHHH
Confidence 33333333
No 16
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.00 E-value=0.0023 Score=67.45 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq 192 (455)
++.++...+...+.|-.+.+..++..+...++.+.++...-..+..+|.+++
T Consensus 193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444444444444455555555555555555555444444444444444
No 17
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.98 E-value=0.0022 Score=73.62 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA-IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~-~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lE 185 (455)
+..+++.++.+.++.+..+++.++.+++.+..++++. +++..++.+.+.+++.|+.+++.++..+..+..+++...
T Consensus 352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555544444444444444443 333333333333333333333333333333333333333
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.98 E-value=0.0012 Score=78.23 Aligned_cols=11 Identities=9% Similarity=0.247 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 012833 371 QVQASVQEMLK 381 (455)
Q Consensus 371 q~q~~~~~~l~ 381 (455)
+++...+.+..
T Consensus 1021 ~F~~if~~L~~ 1031 (1163)
T COG1196 1021 NFSEIFKELFG 1031 (1163)
T ss_pred HHHHHHHHhCC
Confidence 44544444433
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.98 E-value=0.0012 Score=78.37 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 012833 83 QDKSERIVSLQ 93 (455)
Q Consensus 83 ~e~e~~I~eLq 93 (455)
...+..|..++
T Consensus 761 ~~~~~~l~~~~ 771 (1163)
T COG1196 761 EELEEELESLE 771 (1163)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 20
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.94 E-value=0.0013 Score=75.52 Aligned_cols=93 Identities=19% Similarity=0.345 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL-EKLQKINDEQKSKIRKTERALKVAEEEM 188 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Eleskv-eeLek~~eEqekkI~elE~~Lq~lEeeL 188 (455)
++..+.+.+..+..+...++.++........++..+...+++.+.+++... ..++....+.+.++..++.++..++..+
T Consensus 338 Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~ 417 (1074)
T KOG0250|consen 338 EIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQI 417 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444 4444444445555555555555555555
Q ss_pred HHHHHHHhhhhHhh
Q 012833 189 MRAKFEATSRSKEL 202 (455)
Q Consensus 189 ~kaq~E~~~~a~ei 202 (455)
.++..+.+....++
T Consensus 418 ~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 418 NSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444433
No 21
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.87 E-value=0.012 Score=61.04 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=18.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 41 SPLKIELDQLKSKIRSLESHIDEKTQELK 69 (455)
Q Consensus 41 ~~l~~eL~~lr~kI~~Leski~ele~eI~ 69 (455)
..+..++..++.++..++.++..++..++
T Consensus 77 ~~~~~~l~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 77 TDVEADAAELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566777777777777776665544443
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.87 E-value=0.0011 Score=71.96 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=8.8
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHID 62 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ 62 (455)
+..+++.++.++..++.++.
T Consensus 179 ~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 179 LNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 23
>PRK02224 chromosome segregation protein; Provisional
Probab=97.84 E-value=0.0025 Score=73.09 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~ 70 (455)
...+.+++.++..++.+++.+++++..
T Consensus 205 ~~~l~~~~~~l~el~~~i~~~~~~~~~ 231 (880)
T PRK02224 205 HERLNGLESELAELDEEIERYEEQREQ 231 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=97.83 E-value=0.0027 Score=72.59 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (455)
Q Consensus 151 kkl~EleskveeLek~~eEqekkI~elE~~Lq~lEee 187 (455)
..+.+++..+..+...++.++..+..++..++.++..
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~ 702 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE 702 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444333
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.79 E-value=0.012 Score=64.14 Aligned_cols=162 Identities=15% Similarity=0.238 Sum_probs=85.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eL 121 (455)
.++.+++.+..+...|......++.+......++..++..+.........|..+...+......+ .++.+.+..+..++
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l-~~E~~~L~~q~~e~ 218 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEEL-KEERESLKEQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 35666677667766676666666666666666666666666666666666666665554433332 33444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 122 EKQIDNLKKESEKQQKEKEALEARAIEA--------------EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (455)
Q Consensus 122 e~qIe~LkkeLE~~~~e~eeLEae~~el--------------Ekkl~EleskveeLek~~eEqekkI~elE~~Lq~lEee 187 (455)
..+|..|+.++..+.....+.+.....+ ..++.+....+..........+...+.+..++..+++.
T Consensus 219 ~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~ 298 (546)
T PF07888_consen 219 RQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQ 298 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4555555444444433332222222111 12222222222222222234455556666666666677
Q ss_pred HHHHHHHHhhhhHhhhh
Q 012833 188 MMRAKFEATSRSKELTE 204 (455)
Q Consensus 188 L~kaq~E~~~~a~ei~~ 204 (455)
+...+.+..-++.+++.
T Consensus 299 lqaSqq~~~~L~~EL~~ 315 (546)
T PF07888_consen 299 LQASQQEAELLRKELSD 315 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77666666666666644
No 26
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.78 E-value=0.0037 Score=76.38 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESE 133 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE 133 (455)
.+......++.++++++..++
T Consensus 1010 ~l~k~~~kle~~l~~le~~le 1030 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLE 1030 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444433333
No 27
>PRK09039 hypothetical protein; Validated
Probab=97.77 E-value=0.004 Score=64.53 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 012833 51 KSKIRSLESHIDEKTQELKG 70 (455)
Q Consensus 51 r~kI~~Leski~ele~eI~~ 70 (455)
..+|...++++++++.+|.+
T Consensus 45 s~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.0033 Score=72.56 Aligned_cols=89 Identities=24% Similarity=0.298 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ 189 (455)
++.++.++++.++..|.++.-.+......+..+....++++..+...+.+++.|.......+....+++..+...++-+.
T Consensus 908 kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~ 987 (1293)
T KOG0996|consen 908 KVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLK 987 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554444444444445555556666666666665555555555555555555555555555555
Q ss_pred HHHHHHhhh
Q 012833 190 RAKFEATSR 198 (455)
Q Consensus 190 kaq~E~~~~ 198 (455)
.++.+....
T Consensus 988 E~k~~~~~~ 996 (1293)
T KOG0996|consen 988 EIKKELRDL 996 (1293)
T ss_pred HHHHHHHHH
Confidence 555544444
No 29
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.69 E-value=0.0078 Score=67.77 Aligned_cols=163 Identities=22% Similarity=0.328 Sum_probs=96.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----H---------
Q 012833 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN----A--------- 107 (455)
Q Consensus 41 ~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~----~--------- 107 (455)
-.++.+|++++.+.++|+.++..+.+....=.+.|..+|..+.+-...=..++.+|....+.-... +
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~ 535 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQAT 535 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhc
Confidence 356677777777777777777777777666666677777777777776677777665554322110 0
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----------
Q 012833 108 -AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK-------ISDLSAKLEKLQKIND----------- 168 (455)
Q Consensus 108 -~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkk-------l~EleskveeLek~~e----------- 168 (455)
.+--+.+..+..+|+.++..|+.++...++.+..+|.+..++... .+.+-.-+..++++..
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr 615 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETR 615 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 011223566778888888888888888887777777776544432 2333333344444444
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh
Q 012833 169 ---EQKSKIRKTERALKVAEEEMMRAKFEATSRSKELT 203 (455)
Q Consensus 169 ---EqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei~ 203 (455)
++-..+.+..++++.++..+.+-..|..++..+|+
T Consensus 616 iKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 616 IKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555555555555555555554444443
No 30
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.65 E-value=0.023 Score=68.88 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 162 KLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 162 eLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+|+..++....++.+.+.++...+.++..++....
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~le 473 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHS 473 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444443
No 31
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=0.017 Score=66.02 Aligned_cols=126 Identities=25% Similarity=0.335 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 77 QKEKAIQDKSERIVSLQKELSSLQKKETLNAA---EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKI 153 (455)
Q Consensus 77 ~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~---eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl 153 (455)
+.+..|.++...+..-+.+|..+++++..... .+..+++++|..+..+++.-.++.+.-..+...+.-+..++++.+
T Consensus 752 e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~ 831 (1174)
T KOG0933|consen 752 ESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEI 831 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444333211 123333333333333333333444444444444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Q 012833 154 SDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (455)
Q Consensus 154 ~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei 202 (455)
...++.+..++..++.+...+..+...+...+....+++.+.+......
T Consensus 832 ~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~ 880 (1174)
T KOG0933|consen 832 SSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQ 880 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 5555555555555556666666666666666666666666655443333
No 32
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.62 E-value=0.023 Score=68.33 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=22.5
Q ss_pred hhhcCcchHHHHHHHHHHHHHHcCccccchHHHHHhhhhhhHHHHHHh
Q 012833 229 WNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVV 276 (455)
Q Consensus 229 w~~~g~P~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~ 276 (455)
-..++.-+=..+..=|+.+|+ .+..++.+-|..
T Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~---------------~~n~~~~~~w~~ 1152 (1311)
T TIGR00606 1120 LDIYYKTLDQAIMKFHSMKME---------------EINKIIRDLWRS 1152 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH
Confidence 333444455566677888888 677788898873
No 33
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.017 Score=66.88 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (455)
Q Consensus 115 e~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E 194 (455)
++++..+..++.....++.-.+.++.-|..+.+..-+++.++++.+........+.+..+..++..|...+.++.....+
T Consensus 485 ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~ 564 (1293)
T KOG0996|consen 485 EKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKE 564 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 33333333333333333333333333444444444444444444444444444444444444444444444444444433
Q ss_pred Hh
Q 012833 195 AT 196 (455)
Q Consensus 195 ~~ 196 (455)
..
T Consensus 565 l~ 566 (1293)
T KOG0996|consen 565 LP 566 (1293)
T ss_pred HH
Confidence 33
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.59 E-value=0.02 Score=62.44 Aligned_cols=103 Identities=15% Similarity=0.237 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe 122 (455)
..+.-.-++.++...+.+..++.+....+..+..++...+.+.+..+.....+...|+.+... .......+.
T Consensus 134 V~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke--------l~~~~e~l~ 205 (546)
T PF07888_consen 134 VTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKE--------LTESSEELK 205 (546)
T ss_pred EehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 334444456666666666666666555555555555555555555555555555555433322 222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKI 153 (455)
Q Consensus 123 ~qIe~LkkeLE~~~~e~eeLEae~~elEkkl 153 (455)
.+.+.|..+.+.....+..|+.....+..+.
T Consensus 206 ~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 206 EERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 35
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.56 E-value=0.012 Score=71.96 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=3.0
Q ss_pred hhhhHHHH
Q 012833 288 LKTKTIEA 295 (455)
Q Consensus 288 ~k~k~~p~ 295 (455)
-+.+...+
T Consensus 1155 ~~k~e~e~ 1162 (1930)
T KOG0161|consen 1155 NKKREAEV 1162 (1930)
T ss_pred HHHHHHHH
Confidence 33333333
No 36
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=0.094 Score=60.30 Aligned_cols=129 Identities=22% Similarity=0.363 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhHHH-------------HHHHHH
Q 012833 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS----LQKELSSLQKKETLNAAE-------------QVDKAH 115 (455)
Q Consensus 53 kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~e----Lq~eI~sLQkK~s~~~~e-------------ei~~Ae 115 (455)
.+..+.+.+.+.+++|++...-+++.+..|...++.+.+ -..++.++++++...+.+ ....+.
T Consensus 742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~ 821 (1174)
T KOG0933|consen 742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQ 821 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555444433322 223334444444333111 222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~L 181 (455)
-+..+++.++..++.+++.....+..+..+...++.++...+..+..++..+.++...+..+..++
T Consensus 822 lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i 887 (1174)
T KOG0933|consen 822 LEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEI 887 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333344444444444444444444444444444444444444444444444444444444433333
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.55 E-value=0.21 Score=59.87 Aligned_cols=34 Identities=9% Similarity=0.253 Sum_probs=20.4
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 346 ALKPYTKKVVRAYGKFLKSATTYHHQVQASVQEM 379 (455)
Q Consensus 346 ~~~P~~~~v~~~~~~~~~~a~~~h~q~q~~~~~~ 379 (455)
.+.=+...+...+..|+..-..+++.++...++.
T Consensus 982 ~l~e~~~~~~~~i~~f~~~l~~~~r~I~~~s~~l 1015 (1201)
T PF12128_consen 982 ALIEQGRNIGNDISNFYGVLEDFDRRIKSQSRRL 1015 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444444555666667777777777776664443
No 38
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.54 E-value=0.057 Score=51.81 Aligned_cols=153 Identities=18% Similarity=0.291 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI-------QDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR 117 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I-------~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~ 117 (455)
-+|..++++|..++.++.++..+-..+..--.--+..| .+....|+...++|..|....... .+....++.+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~-q~~~r~~~~k 90 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKS-QEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45556666666666666666555544443322222333 444445555555555554433322 3344444445
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 012833 118 ADELEKQIDNLKKESEKQQK--------EKEALEARAIEAEKKISDLSAKLEKLQKIND----EQKSKIRKTERALKVAE 185 (455)
Q Consensus 118 i~eLe~qIe~LkkeLE~~~~--------e~eeLEae~~elEkkl~EleskveeLek~~e----EqekkI~elE~~Lq~lE 185 (455)
+.+.+.++.+++.++..+.. +.++|..++..++.++.+.+.++..|+..++ ....++..-......++
T Consensus 91 lk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~ 170 (194)
T PF15619_consen 91 LKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQ 170 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 55555555444444444332 1234555555555555555555555544443 23333333333444444
Q ss_pred HHHHHHHHHHhhh
Q 012833 186 EEMMRAKFEATSR 198 (455)
Q Consensus 186 eeL~kaq~E~~~~ 198 (455)
.++..++.+...+
T Consensus 171 ~~~~~l~~ei~~L 183 (194)
T PF15619_consen 171 EEVKSLQEEIQRL 183 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 39
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.51 E-value=0.017 Score=63.96 Aligned_cols=150 Identities=20% Similarity=0.239 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~ 123 (455)
..++++++.+|+.+..++.+++.+++.....+++++..+.+......+++.++.-.. +.. +-+.++++++..|+.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~-k~~----~lL~d~e~ni~kL~~ 401 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK-KTV----ELLPDAEENIAKLQA 401 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHhcCcHHHHHHHHH
Confidence 344444555555555555555555555544455444444444444444444443221 111 112344555555555
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 124 QIDNLKKESEKQQKEKE----ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 124 qIe~LkkeLE~~~~e~e----eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
.++.-...+..+..+=+ .|..+...++........+....-..+.+....++++..+++.-++.+.++..+....
T Consensus 402 ~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 402 LVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55555555554443333 2233333333333333333333444444555555555555555555555555544433
No 40
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.47 E-value=0.044 Score=62.38 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~ 123 (455)
+..|+-++..+...+...+-+.++++.+...+..++..+.+++..|..++.+.+.++.++... .+..+..+.++..|..
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l-~d~~d~~e~ki~~Lq~ 399 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDL-RDMLDKKERKINVLQK 399 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555555555555555555555555444432 3344445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 124 QIDNLKKESEKQQKEKEALEARA 146 (455)
Q Consensus 124 qIe~LkkeLE~~~~e~eeLEae~ 146 (455)
.|+.|...+.....++.....++
T Consensus 400 kie~Lee~l~ekd~ql~~~k~Rl 422 (775)
T PF10174_consen 400 KIENLEEQLREKDRQLDEEKERL 422 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444444444443
No 41
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.47 E-value=0.11 Score=52.30 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 146 AIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (455)
Q Consensus 146 ~~elEkkl~EleskveeLek~~eEqekkI~el 177 (455)
..++...+..+..+++.+...+..++..+.++
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 33333444444444444444444444444433
No 42
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.45 E-value=0.21 Score=52.31 Aligned_cols=58 Identities=14% Similarity=0.269 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-------hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQ-------ELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~-------eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
+.++|..++-++...+.++.+.+. ++....+|-+..+....+..+++..-+.++..++
T Consensus 79 i~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t 143 (499)
T COG4372 79 IRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLT 143 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655555555555 4544444555555555555555555555554443
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.43 E-value=0.52 Score=56.55 Aligned_cols=100 Identities=20% Similarity=0.359 Sum_probs=55.8
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhHHHHH
Q 012833 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL-------SSLQKKETLNAAEQV 111 (455)
Q Consensus 39 ~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI-------~sLQkK~s~~~~eei 111 (455)
+...+..++..+...|..+....+++++.+......++.....+.+....+.....++ ..++.+.....++..
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERK 680 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777776666666666666655555555555555555544444444444 444444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 112 DKAHARADELEKQIDNLKKESEKQQKE 138 (455)
Q Consensus 112 ~~Ae~~i~eLe~qIe~LkkeLE~~~~e 138 (455)
..++.++..++.++..++++++.....
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~~~~~~ 707 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELEELLEE 707 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666665555555554433
No 44
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.40 E-value=0.03 Score=62.02 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~ 123 (455)
..+...-..++..|+.+++++..+|.....+++.+...+.+...++.....+...++..... ...+-.=+.+.++
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l-----~~k~~~lL~d~e~ 394 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKL-----KKKTVELLPDAEE 394 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcCcHH
Confidence 44456678888999999999999999988888888888888888888888888777654332 1233334566678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 124 QIDNLKKESEKQQKEKEALEAR----AIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (455)
Q Consensus 124 qIe~LkkeLE~~~~e~eeLEae----~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a 199 (455)
.|..|+..++.-...+..|..+ ...+..++..+.........+.......+..+...++.+..++.........+.
T Consensus 395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~ 474 (594)
T PF05667_consen 395 NIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLV 474 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998888888887766555 444445555555555555555666667777777777777777777666666555
Q ss_pred Hhhh
Q 012833 200 KELT 203 (455)
Q Consensus 200 ~ei~ 203 (455)
.+..
T Consensus 475 ~e~e 478 (594)
T PF05667_consen 475 KELE 478 (594)
T ss_pred HHHH
Confidence 5553
No 45
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.39 E-value=0.24 Score=57.53 Aligned_cols=68 Identities=9% Similarity=0.177 Sum_probs=46.1
Q ss_pred hhhhHHHHHHhhccchhHhHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccc
Q 012833 324 FSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKFLKSATTYHHQVQASVQEMLKKHELTSPLATKEL 394 (455)
Q Consensus 324 ~~~py~~qa~~~~~p~~~~~~~~~~P~~~~v~~~~~~~~~~a~~~h~q~q~~~~~~l~~~e~~~~~a~~el 394 (455)
..+......++-+..-++.+.+-.-|+...+...+..++..+..+...+|+..+ .+-++++-+++.++
T Consensus 636 ~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~---~q~~~~~l~~~qe~ 703 (1041)
T KOG0243|consen 636 SLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLS---NQQEILSLFANQEL 703 (1041)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHhhHHHH
Confidence 333444444455555566677777788888888899999999999888887777 44555555555443
No 46
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.34 E-value=0.7 Score=55.95 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~ 78 (455)
+..+++.++.++..+...++.+..+...+..+|..+
T Consensus 827 le~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444444444444444444
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.33 E-value=0.14 Score=51.74 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 146 AIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (455)
Q Consensus 146 ~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lE 185 (455)
+..+...+.++...++.++..++.++.....++..+..++
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 3344445555555555555555555555555555555544
No 48
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.39 Score=52.50 Aligned_cols=151 Identities=20% Similarity=0.294 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKT---QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD 119 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele---~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~ 119 (455)
...+++.++..-..|..+|++++ +.++...+..+.+.+.++....-...+.++-..+.+++... .+++..-++++.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l-~~Eie~kEeE~e 311 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML-KSEIEEKEEEIE 311 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 44566666666666666666543 23444444444455555555544444444444444444433 334444455555
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKESEKQ---QKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT----ERALKVAEEEMMRAK 192 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~---~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~el----E~~Lq~lEeeL~kaq 192 (455)
.+..++++|++.++.+ -++.+....+.+.+...++.++.+++.+.+.+-+++.+++.. +..+..+...+.++.
T Consensus 312 ~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~ 391 (581)
T KOG0995|consen 312 KLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIK 391 (581)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555 234446666677777777777777777777766655544443 333344444444444
Q ss_pred HH
Q 012833 193 FE 194 (455)
Q Consensus 193 ~E 194 (455)
.-
T Consensus 392 l~ 393 (581)
T KOG0995|consen 392 LG 393 (581)
T ss_pred HH
Confidence 33
No 49
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.28 E-value=0.43 Score=52.74 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Q 012833 146 AIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (455)
Q Consensus 146 ~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei 202 (455)
.++++..+.++..+++.++....+....+..+......+...+.+.+.......+.+
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l 434 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444443333
No 50
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.27 E-value=0.033 Score=62.83 Aligned_cols=98 Identities=14% Similarity=0.254 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe 122 (455)
+..++..|+.+|...+..=+|+.++|...+..=..+...|.++..+...|+.++..|......+ ...+..+|.++.+..
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~D-Kq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQD-KQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554444434445555555555556666665554332222 335567888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 123 KQIDNLKKESEKQQKEKEA 141 (455)
Q Consensus 123 ~qIe~LkkeLE~~~~e~ee 141 (455)
.+...++++|...++.+.+
T Consensus 502 ~~R~~lEkQL~eErk~r~~ 520 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKE 520 (697)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 8888888888777655543
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.26 E-value=0.055 Score=65.66 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=4.3
Q ss_pred hchhHHHHh
Q 012833 314 VDPYFQEAK 322 (455)
Q Consensus 314 ~~Py~~e~k 322 (455)
..|-|..+.
T Consensus 601 ~ap~W~~a~ 609 (1486)
T PRK04863 601 RAPAWLAAQ 609 (1486)
T ss_pred hChHHHhhH
Confidence 445555443
No 52
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=97.26 E-value=0.15 Score=50.07 Aligned_cols=123 Identities=10% Similarity=0.150 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Q 012833 76 AQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ---------QKEKEALEARA 146 (455)
Q Consensus 76 k~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~---------~~e~eeLEae~ 146 (455)
.+++..|.+....+.+++..+...+..+... ......+...+.++..+++.+...+... ......++.+.
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~-~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~ 159 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEI-QTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAEL 159 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHH
Confidence 3444444444444444444444444433332 2334444445555555555444444432 33333555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 147 IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (455)
Q Consensus 147 ~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a 199 (455)
.-+..++..++..+.......+=.+.+.+-+..+++.++..+..++...+.+.
T Consensus 160 ~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 160 AALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444444444444444455555555555555444444443
No 53
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.25 E-value=0.055 Score=55.60 Aligned_cols=73 Identities=23% Similarity=0.374 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhh
Q 012833 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA----EEEMMRAKFEATS 197 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~l----EeeL~kaq~E~~~ 197 (455)
+..++.++.....+++....++.+++.+++.++..++.+...+.++..+|.++++..... ..++.+++.+...
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444444444444444444443322 2445555554443
No 54
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.24 E-value=0.041 Score=57.09 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 172 SKIRKTERALKVAEEEMMRAKFEA 195 (455)
Q Consensus 172 kkI~elE~~Lq~lEeeL~kaq~E~ 195 (455)
..+.+++.++..++..+..++...
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444433
No 55
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.029 Score=62.66 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN 106 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~ 106 (455)
+..+|..|+-++.+|..++.++.-.|.+...+|......++-.-.+|..|+.+|..+|.++..+
T Consensus 442 l~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 442 LQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555555666666666665555566666666666666555443
No 56
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.19 E-value=0.59 Score=52.27 Aligned_cols=130 Identities=18% Similarity=0.337 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNA-AEQVDKAHARADELEKQIDNL 128 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~-~eei~~Ae~~i~eLe~qIe~L 128 (455)
++.+...++.++..+..++..+.++....-..|.+++..|.+|.+++........... .+....++.++..|..+++.|
T Consensus 20 lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L 99 (617)
T PF15070_consen 20 LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESL 99 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666777777777777777777777777777777777766654432211111 122235667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 129 KKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (455)
Q Consensus 129 kkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~ 179 (455)
..++..+..+...|..-..+.+.++.+++..++.++....+..+.+..++.
T Consensus 100 ~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqs 150 (617)
T PF15070_consen 100 EEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQS 150 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 777777666666555555566666666666666666555555554444443
No 57
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.19 E-value=0.06 Score=58.89 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAI 147 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~ 147 (455)
.+..+++.+..+...++.|+.+++..+.++..+..+..
T Consensus 296 ~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~ 333 (522)
T PF05701_consen 296 ELEKAKEEASSLRASVESLRSELEKEKEELERLKEREK 333 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 58
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.17 E-value=0.069 Score=47.89 Aligned_cols=121 Identities=24% Similarity=0.415 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qI 125 (455)
++..+..++..+...+.....++.....++...-....+...... .++ .+-.. ..+.+..+++++..++.++
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE---~El---~~Ha~--~~~~L~~lr~e~~~~~~~~ 75 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE---REL---VKHAE--DIKELQQLREELQELQQEI 75 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HHhHH--HHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444444444444433333333333211 111 11111 1234444555555555555
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 126 DNLKKESEKQQKEKE----ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (455)
Q Consensus 126 e~LkkeLE~~~~e~e----eLEae~~elEkkl~EleskveeLek~~eEqekkI 174 (455)
..|+.+.+.....+. .++.+...+++.+.+++.++++|...+.-+-.+|
T Consensus 76 ~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 76 NELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444433 4445555555555555555555555544443333
No 59
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.16 E-value=0.16 Score=48.93 Aligned_cols=103 Identities=22% Similarity=0.339 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe 126 (455)
|..++.+|.++..+....+..+.+...+...+-.-+.....++.+|+.++...++.- .....++.++..++.++.
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK-----~~L~~~k~rl~~~ek~l~ 103 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDK-----QSLQNLKARLKELEKELK 103 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 444556666666665555555666666666666666666666666666666554321 133456667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 127 NLKKESEKQQKEKEALEARAIEAEKKIS 154 (455)
Q Consensus 127 ~LkkeLE~~~~e~eeLEae~~elEkkl~ 154 (455)
.|+-+-+.+......++.+..++..+..
T Consensus 104 ~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 104 DLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766666666655444
No 60
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.14 E-value=0.24 Score=47.53 Aligned_cols=63 Identities=27% Similarity=0.346 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 134 KQQKEKEALEARAIEAEKKISDLSAKLEKLQ----KINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 134 ~~~~e~eeLEae~~elEkkl~EleskveeLe----k~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
.+...++.++.++.+.+.++..++.+++-.+ ..+..-..+..++...++.++.++..+.....
T Consensus 122 eL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 122 ELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444332222 22223334444444444444444444444433
No 61
>PRK01156 chromosome segregation protein; Provisional
Probab=97.13 E-value=0.049 Score=62.85 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 147 IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (455)
Q Consensus 147 ~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEee 187 (455)
..++.....++..++.+...++.+...+.++..++..++.+
T Consensus 677 ~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~ee 717 (895)
T PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDR 717 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333444444444444444444444444444433333333
No 62
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.12 Score=58.31 Aligned_cols=93 Identities=19% Similarity=0.261 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 012833 107 AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK------LEKLQKINDEQKSKIRKTERA 180 (455)
Q Consensus 107 ~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Elesk------veeLek~~eEqekkI~elE~~ 180 (455)
+.+++..+..+...+..+...+.+++++.+..+..+.+...+.+.....+... +-++.....+...++++++.+
T Consensus 735 ~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e 814 (970)
T KOG0946|consen 735 QNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSE 814 (970)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 34455666666666666666777777666666666665555443322222222 222222233444444444444
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 012833 181 LKVAEEEMMRAKFEATSRS 199 (455)
Q Consensus 181 Lq~lEeeL~kaq~E~~~~a 199 (455)
+..++++++.+-.+....+
T Consensus 815 ~~~~keq~~t~~~~tsa~a 833 (970)
T KOG0946|consen 815 LTQLKEQIQTLLERTSAAA 833 (970)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4444444444444433333
No 63
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.09 E-value=0.058 Score=59.48 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHID 62 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ 62 (455)
...+++.++.+|......|.
T Consensus 254 i~~~i~~l~~~i~~~~~~l~ 273 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLE 273 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44566666666655444443
No 64
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=97.09 E-value=0.011 Score=56.43 Aligned_cols=62 Identities=26% Similarity=0.399 Sum_probs=12.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 40 ~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
..++...+..++.++..+.....++.+++.+...++..++..+...+..|.++..++..|+.
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~ 130 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEE 130 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34456677778888888888888888888888888888888888888888888777777753
No 65
>PRK01156 chromosome segregation protein; Provisional
Probab=97.06 E-value=0.1 Score=60.24 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhccc
Q 012833 370 HQVQASVQEMLKKHEL 385 (455)
Q Consensus 370 ~q~q~~~~~~l~~~e~ 385 (455)
..++....+++..-.+
T Consensus 760 ~~~~~~~~e~~~~~~~ 775 (895)
T PRK01156 760 QAMTSLTRKYLFEFNL 775 (895)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3455556666554444
No 66
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.02 E-value=0.22 Score=45.46 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012833 151 KKISDLSAKLEKLQKIN 167 (455)
Q Consensus 151 kkl~EleskveeLek~~ 167 (455)
+.+++.+.++.+|+...
T Consensus 87 k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 87 KELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333333333333
No 67
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.02 E-value=0.45 Score=55.63 Aligned_cols=154 Identities=21% Similarity=0.254 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~ 123 (455)
..+-...+++-..++.+.+++...+++-+.-....++.|++....|...++-|..++..... .++-...+..++.+|+.
T Consensus 1548 ~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~-aE~~~~~a~q~~~eL~~ 1626 (1758)
T KOG0994|consen 1548 QSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAA-AEKLATSATQQLGELET 1626 (1758)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33333445555555555555555555555555566667777777777777777777655443 35566677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 124 qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
.++.|+...-....+-...+..+..+.....+.++..+.|++..+.....++.-.+......+..+.++.|+..+
T Consensus 1627 ~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~L 1701 (1758)
T KOG0994|consen 1627 RMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKL 1701 (1758)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 777777666666655555555555555555556666665655555555555544444444544455555544433
No 68
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.16 Score=55.47 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEA---RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEa---e~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEe 186 (455)
.+...+.++..-+.+++.++.+.+.++..++.+.= +......+.+++...++.++.+++.+.+.+-+++..++..-.
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~ 374 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFK 374 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444445555555555555555555444443321 122333345556666666666667777777666666666666
Q ss_pred HHHHHHHHHhhhhHhhh
Q 012833 187 EMMRAKFEATSRSKELT 203 (455)
Q Consensus 187 eL~kaq~E~~~~a~ei~ 203 (455)
++...-.+.+..+..|.
T Consensus 375 ~le~~~~~~~~l~~~i~ 391 (581)
T KOG0995|consen 375 ELEKKFIDLNSLIRRIK 391 (581)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666665553
No 69
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.00 E-value=0.46 Score=48.31 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV 90 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~ 90 (455)
.+.+++++++..+..++.++..+-+.+.+++.++...-.+.+..++
T Consensus 41 ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~ 86 (294)
T COG1340 41 EKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQ 86 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333333333333333333333333333333333
No 70
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.95 E-value=0.33 Score=52.01 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=13.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQE 67 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~e 67 (455)
.+..+++.++.++..++.++..+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~ 119 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTL 119 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554433
No 71
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.92 E-value=0.091 Score=59.90 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=8.6
Q ss_pred ccHHHHHHHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSL 57 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~L 57 (455)
+++.-|+.-..+|..+
T Consensus 228 alq~~ie~Kd~ki~~l 243 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASL 243 (775)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555554
No 72
>PRK11281 hypothetical protein; Provisional
Probab=96.90 E-value=1.5 Score=52.12 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHhcccCccc-ccccchhhh
Q 012833 351 TKKVVRAYGKFLKSATTYH---HQVQ---ASVQEMLKKHELTSPL-ATKELEWFA 398 (455)
Q Consensus 351 ~~~v~~~~~~~~~~a~~~h---~q~q---~~~~~~l~~~e~~~~~-a~~el~w~~ 398 (455)
.+.....+..++..+++.. +|+. ..++++|.+|=|=-|= .--.+.||.
T Consensus 416 L~~l~~~~~~~l~~~~~l~~~q~Ql~~~~~~l~~~L~~~lfWv~s~~pid~~w~~ 470 (1113)
T PRK11281 416 LDQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQQIFWVNSNKPMDLDWLK 470 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcCHHHHH
Confidence 3445556666666666663 5654 4566777777664221 223556654
No 73
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.90 E-value=0.44 Score=49.93 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
.++++.....+.....++......++..-...+...+++-.+|++.+..+
T Consensus 107 ~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l 156 (499)
T COG4372 107 ARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTL 156 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444555555555555554443
No 74
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.88 E-value=0.21 Score=51.41 Aligned_cols=83 Identities=30% Similarity=0.351 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNLKKESEKQ----QKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~LkkeLE~~----~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEe 186 (455)
...+.++...|..++..|+...... ..++..+..++......++....++++++.+++.++..++++..+.+.+..
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~ 258 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLA 258 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333322 233334444444444444444444455555555555555555555555555
Q ss_pred HHHHHHH
Q 012833 187 EMMRAKF 193 (455)
Q Consensus 187 eL~kaq~ 193 (455)
+|..++.
T Consensus 259 eI~e~~~ 265 (325)
T PF08317_consen 259 EIAEAEK 265 (325)
T ss_pred HHHHHHH
Confidence 5444443
No 75
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.86 E-value=0.018 Score=54.81 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 134 KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (455)
Q Consensus 134 ~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEee 187 (455)
.+..++..++.+...++..+.+.+..++.++++...++.+...++.++..++.+
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444444444444444444444333
No 76
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.85 E-value=0.52 Score=47.91 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Q 012833 153 ISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204 (455)
Q Consensus 153 l~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei~~ 204 (455)
+.++.+++..+.....++...|.++-++++.+-.+|.++..+..+...+.-+
T Consensus 160 ~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade 211 (294)
T COG1340 160 LKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADE 211 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555566666666666666666666665555544443
No 77
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.81 E-value=0.28 Score=53.67 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=45.9
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 66 ~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
..+.....++.+....|.....++..|...+.+|..++... ...+..+.++.......|..|+.++...+.++.
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~-K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKE-KEELERLKEREKEASSEVSSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Confidence 34666666777777777777777777777777776666543 334555555555555556666555555555554
No 78
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.18 Score=56.63 Aligned_cols=56 Identities=7% Similarity=0.089 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL 105 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~ 105 (455)
-++++.++..+++.-...|--.....++++..+.-++.+++.|+.+|.+..-++..
T Consensus 414 Erar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt 469 (1118)
T KOG1029|consen 414 ERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITT 469 (1118)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccch
Confidence 45666666666666666665556666666666666666666666666666554443
No 79
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.78 E-value=0.12 Score=59.34 Aligned_cols=146 Identities=23% Similarity=0.291 Sum_probs=83.5
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH------------
Q 012833 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNA------------ 107 (455)
Q Consensus 40 ~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~------------ 107 (455)
...+..+|..++++|..|+.++.|....+-...++|.+++..|..+.++|.++..+-.+...-...+.
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ 251 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTT 251 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCc
Confidence 34456666666666666666666666666666666666666666666666666554433222111110
Q ss_pred -HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 108 -AE---QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA--IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (455)
Q Consensus 108 -~e---ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~--~elEkkl~EleskveeLek~~eEqekkI~elE~~L 181 (455)
.+ .++-.+.++.+|+..-..|..+.+.++.++..++++- .++|.++-.++++++.|+...+..+.++.++..+.
T Consensus 252 ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn 331 (1195)
T KOG4643|consen 252 YKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN 331 (1195)
T ss_pred cchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 00 2223455555555555555556666666666666554 56666666666666666666666666666655555
Q ss_pred HHHH
Q 012833 182 KVAE 185 (455)
Q Consensus 182 q~lE 185 (455)
..++
T Consensus 332 stLq 335 (1195)
T KOG4643|consen 332 STLQ 335 (1195)
T ss_pred HHHH
Confidence 4444
No 80
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.77 E-value=0.43 Score=56.54 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 139 ~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
...++.+...++......+...+=.+...+....+++.++..++.+++.++....
T Consensus 182 ~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~ 236 (1109)
T PRK10929 182 SAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQ 236 (1109)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444445555555555666666666666655554333
No 81
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.62 Score=52.43 Aligned_cols=103 Identities=22% Similarity=0.228 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012833 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (455)
Q Consensus 121 Le~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ 200 (455)
+......+.+++.....-++.......++...+..+..+++..+.+.++.+..+.+....+........++++|...+..
T Consensus 536 lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~ 615 (698)
T KOG0978|consen 536 LTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKR 615 (698)
T ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444455555555555555555555666666666666666665555555666677666666
Q ss_pred hhhhhc----cccCChHHHHHHHHHHH
Q 012833 201 ELTEVH----SAWLPPWLAVHLLQCQS 223 (455)
Q Consensus 201 ei~~~g----Gawl~Pw~~~~~~~~~~ 223 (455)
++.+++ |+=--|-|+.++..|+.
T Consensus 616 kle~~k~~~~~~s~d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 616 KLERLKKEESGASADEVLAEELKEYKE 642 (698)
T ss_pred HHHHhccccccccccHHHHHHHHHHHh
Confidence 664443 23334666777766665
No 82
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.74 E-value=0.19 Score=57.31 Aligned_cols=121 Identities=23% Similarity=0.312 Sum_probs=72.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eL 121 (455)
+.......+..++..+++.+..++..+..-.+++......+.+.+..|.+|+.++.+. ++..+..+.++...+.....+
T Consensus 586 a~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~-keS~s~~E~ql~~~~e~~e~l 664 (769)
T PF05911_consen 586 ADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESA-KESNSLAETQLKAMKESYESL 664 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677778888888888888777777788888888888888888888888765 344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (455)
Q Consensus 122 e~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeL 163 (455)
+.+...++.+++.+...+..|+.++..-.....++..+..+|
T Consensus 665 e~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~L 706 (769)
T PF05911_consen 665 ETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCREL 706 (769)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 444444444444444444444444433333333333333333
No 83
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.74 E-value=0.78 Score=51.99 Aligned_cols=160 Identities=21% Similarity=0.291 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhHH----------
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK-----ETLNAA---------- 108 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK-----~s~~~~---------- 108 (455)
-.+|..++..+.+++.++..+...+.+....+..-...+.+....|..|-..+..+..- ..+...
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d 343 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHED 343 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccc
Confidence 45667788889999989888888888888888888888887777888888877777651 000000
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 109 --------EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA----IEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (455)
Q Consensus 109 --------eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~----~elEkkl~EleskveeLek~~eEqekkI~e 176 (455)
.....++.++..+..++..|+.++..++.+...++... ..++..++.+..++..+++...+-+.++..
T Consensus 344 ~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~ 423 (717)
T PF09730_consen 344 GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISE 423 (717)
T ss_pred cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 11234566777777778888777777766666554443 333555666666666666655444555555
Q ss_pred HHHHHHHHH-------HHHHHHHHHHhhhhHhhh
Q 012833 177 TERALKVAE-------EEMMRAKFEATSRSKELT 203 (455)
Q Consensus 177 lE~~Lq~lE-------eeL~kaq~E~~~~a~ei~ 203 (455)
++.++..+. ..+..++.++.....+++
T Consensus 424 LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLA 457 (717)
T PF09730_consen 424 LEKELRALSKLAGESQGSLNSAQDELVTFSEELA 457 (717)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 555555554 445555555555555553
No 84
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.69 E-value=0.44 Score=54.35 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 90 VSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 90 ~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
.+|-.+.+++++..++ .+..+++.+++...|+.++++++.+....+...+
T Consensus 441 ~~lL~K~~di~kQle~-~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e 490 (980)
T KOG0980|consen 441 ADLLRKYDDIQKQLES-AEQSIDDVEEENTNLNDQLEELQRAAGRAETKTE 490 (980)
T ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3333444444444333 2344456666666666666666555555433333
No 85
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.69 E-value=0.33 Score=49.92 Aligned_cols=52 Identities=23% Similarity=0.387 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q 012833 145 RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE----EEMMRAKFEAT 196 (455)
Q Consensus 145 e~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lE----eeL~kaq~E~~ 196 (455)
+..+++.++++++..++.....+.+...+|++++..+.... .++.+++....
T Consensus 226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 226 KLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLK 281 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444333322 44555554444
No 86
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.68 E-value=0.5 Score=50.84 Aligned_cols=60 Identities=8% Similarity=0.179 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhh--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELK--------GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~--------~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK 102 (455)
+..+++.++.++.+.+.++.+..++-. ...+.+.+++..+.+.+.++.+.+..++.+++.
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~ 233 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQ 233 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655432211 123455555566666666666666666666554
No 87
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=96.66 E-value=0.58 Score=45.94 Aligned_cols=60 Identities=23% Similarity=0.227 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 134 KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 134 ~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
.+..+...++.+...++..+.......+=.+...+....++..++..++.++..+.....
T Consensus 154 ~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~ 213 (240)
T PF12795_consen 154 LLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRR 213 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444444455545444444433
No 88
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.64 E-value=0.16 Score=58.49 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~ 123 (455)
...-..+.-+|+.++++|.-+.++++++.+.+.++...|..++.+|..|..++......-.+ ......++..+..
T Consensus 169 ~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~r-----a~~yrdeldalre 243 (1195)
T KOG4643|consen 169 VKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHR-----ADRYRDELDALRE 243 (1195)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhHHHHHHH
Confidence 34445688999999999999999999999999999999999999999999988877643322 2222333333333
Q ss_pred H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 124 Q--------------IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL--EKLQKINDEQKSKIRKTERALKVAEEE 187 (455)
Q Consensus 124 q--------------Ie~LkkeLE~~~~e~eeLEae~~elEkkl~Eleskv--eeLek~~eEqekkI~elE~~Lq~lEee 187 (455)
+ ++.++.+++.++.+...|-++..-++.+++.+...- ..++.++-.+++++..+.......+..
T Consensus 244 ~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~k 323 (1195)
T KOG4643|consen 244 QAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHK 323 (1195)
T ss_pred hhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 2 444677777777777777777777777777766655 556666666666666666666666666
Q ss_pred HHHHHHHHhhhhH
Q 012833 188 MMRAKFEATSRSK 200 (455)
Q Consensus 188 L~kaq~E~~~~a~ 200 (455)
+.++..|...++.
T Consensus 324 teeL~eEnstLq~ 336 (1195)
T KOG4643|consen 324 TEELHEENSTLQV 336 (1195)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655554443
No 89
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.63 E-value=0.7 Score=44.35 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~s 98 (455)
..+++..+.++.-+..+..+.++.-++....++.+++.-.+.+..+..+..++..
T Consensus 17 eeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkE 71 (205)
T KOG1003|consen 17 EEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKE 71 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555655555555555555555555543
No 90
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.61 E-value=0.29 Score=56.34 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012833 152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS 197 (455)
Q Consensus 152 kl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~ 197 (455)
+..++..+.+++.....++|..-..+...+..++..+.+.+..+..
T Consensus 454 ~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~ 499 (1200)
T KOG0964|consen 454 ENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRA 499 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666677777777777777776666553
No 91
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.61 E-value=0.53 Score=48.14 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=27.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 012833 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (455)
Q Consensus 41 ~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e 79 (455)
......++.++.++..|+.+-..+..+...+..+....+
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E 194 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYE 194 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Confidence 445678888888888888877777776666655554444
No 92
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.59 E-value=3.1 Score=51.38 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
+|.+......++.++...|+.+..++.-++..+.++..+|.....++..|
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l 1283 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKL 1283 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444
No 93
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.58 E-value=0.43 Score=49.07 Aligned_cols=81 Identities=23% Similarity=0.246 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQ----QKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~----~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL 188 (455)
.+.++...|+.++..|++..+.+ ..++..+.+++.+....+....+++++++.++.+....|++...+...++.+|
T Consensus 176 ~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 176 KLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333332 12333444444444444444444444555555555555555555555555555
Q ss_pred HHHHH
Q 012833 189 MRAKF 193 (455)
Q Consensus 189 ~kaq~ 193 (455)
..++.
T Consensus 256 ~~ae~ 260 (312)
T smart00787 256 AEAEK 260 (312)
T ss_pred HHHHH
Confidence 44444
No 94
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=96.56 E-value=0.16 Score=54.67 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVA---QKEK-AIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk---~~e~-~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe 122 (455)
++.|+.++..+++++..+.++..-+..|-- ..++ ......+++.++..++.++|+.+.+ ++++.....++++.|.
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~-kt~el~~q~Ee~skLl 239 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQS-KTKELSRQQEENSKLL 239 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 444555555555555555444332222110 1111 1123334444444444444433333 2445555566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHh
Q 012833 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT-SRSKE 201 (455)
Q Consensus 123 ~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~-~~a~e 201 (455)
++|.++++.+..+.-+++++. .-+......-+.++.+..+.+.+..+....+..++++++.+..-.+ .....
T Consensus 240 sql~d~qkk~k~~~~Ekeel~-------~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~ 312 (596)
T KOG4360|consen 240 SQLVDLQKKIKYLRHEKEELD-------EHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQ 312 (596)
T ss_pred HHHHhhHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHH
Confidence 777766666555554444443 3334444444555555555555666666666666666666554333 22223
Q ss_pred hhhhccc-cCChHHHHH
Q 012833 202 LTEVHSA-WLPPWLAVH 217 (455)
Q Consensus 202 i~~~gGa-wl~Pw~~~~ 217 (455)
-+..||. |.+-=++++
T Consensus 313 ~~~~~~~~fp~~~~aae 329 (596)
T KOG4360|consen 313 EALSHGHHFPQLSLAAE 329 (596)
T ss_pred HHHHhhhhCChhhHHHH
Confidence 3556674 444333333
No 95
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.55 E-value=0.43 Score=53.31 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=53.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HHHHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA--EQVDKAHARAD 119 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~--eei~~Ae~~i~ 119 (455)
.+..++..|+.++..|..++.....+-..++.-..+.+..|.+.+..+..++....+..+-...+.. .-+..|-.+..
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~ 163 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH
Confidence 3555666677777777666665544444444444555556666665555555554433221111111 13344555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~e 140 (455)
+|..++.+++.....+.+++.
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~ 184 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENM 184 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 777777777766666655553
No 96
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.55 E-value=0.46 Score=54.22 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 012833 49 QLKSKIRSLESHIDEKTQEL---KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (455)
Q Consensus 49 ~lr~kI~~Leski~ele~eI---~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qI 125 (455)
+|+.+++++.......++-. ++........++.+++....+.++.++=..+=.|...+ ..+...++.-+.+.+++.
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di-~kQle~~~~s~~~~~~~~ 468 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDI-QKQLESAEQSIDDVEEEN 468 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHH
Confidence 45556655555555554443 55555555555555555555555555544444444433 445556666666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSK 173 (455)
Q Consensus 126 e~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekk 173 (455)
..|...++........++.+.++..+.++.++.++..+..+.++++..
T Consensus 469 ~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 469 TNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776666766666666666666666665555555554444
No 97
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.53 E-value=1.5 Score=49.05 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEk 151 (455)
...+.|..++.++.+-++.+-..+...+.+++++..++.
T Consensus 520 ~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qa 558 (961)
T KOG4673|consen 520 LLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQA 558 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544555555555444433
No 98
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.51 E-value=0.41 Score=54.36 Aligned_cols=22 Identities=5% Similarity=-0.019 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012833 171 KSKIRKTERALKVAEEEMMRAK 192 (455)
Q Consensus 171 ekkI~elE~~Lq~lEeeL~kaq 192 (455)
+.++.+++++.+..+..+..+-
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555544444444333
No 99
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.47 E-value=1.1 Score=44.62 Aligned_cols=178 Identities=18% Similarity=0.223 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~q 124 (455)
+.+.-+...+..+..++....+.+......+...+..+..++.++..|..+......++..+ ....+....+..+|...
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l-~~~t~~t~~~a~~L~~~ 95 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQL-NNNTERTLQRAQDLEQF 95 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555444555555555555555555555554443333332 33445555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 125 IDNLKKESEKQQKEKEALEA-----RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeLEa-----e~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a 199 (455)
|..+...+..+-.+...+.. .-.++...+.+.+.-+++++... ........+.++..++.-+.+.+.......
T Consensus 96 i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~ 173 (264)
T PF06008_consen 96 IQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKWFQKPQ 173 (264)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 66666666666655554444 23444444555555554444431 344444444444444444444444332222
Q ss_pred HhhhhhccccCChHHHHHHHHHHHHHH
Q 012833 200 KELTEVHSAWLPPWLAVHLLQCQSLIE 226 (455)
Q Consensus 200 ~ei~~~gGawl~Pw~~~~~~~~~~~~~ 226 (455)
.+... --.-+|-+|+.|-.+++++-.
T Consensus 174 ~~~~~-l~~~i~~~L~~~~~kL~Dl~~ 199 (264)
T PF06008_consen 174 QENES-LAEAIRDDLNDYNAKLQDLRD 199 (264)
T ss_pred HhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 11100 000145567777777776443
No 100
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.45 E-value=0.2 Score=54.87 Aligned_cols=82 Identities=26% Similarity=0.313 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq 192 (455)
.+......++.+|..|+.+++.+.....+.+........++.+....+.+++.+....+..+..++.++..+..+..++.
T Consensus 103 e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 103 ETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLR 182 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33333444444444444444444444443333333333333333334444444444444444444444333333333333
Q ss_pred HH
Q 012833 193 FE 194 (455)
Q Consensus 193 ~E 194 (455)
.+
T Consensus 183 ~~ 184 (546)
T KOG0977|consen 183 EE 184 (546)
T ss_pred HH
Confidence 33
No 101
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.45 E-value=0.21 Score=53.54 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=15.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHH
Q 012833 40 SSPLKIELDQLKSKIRSLESHIDEK 64 (455)
Q Consensus 40 ~~~l~~eL~~lr~kI~~Leski~el 64 (455)
-..+..++..++.++..|+..++.+
T Consensus 99 ~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 99 KQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777776665543
No 102
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.45 E-value=0.8 Score=42.85 Aligned_cols=120 Identities=23% Similarity=0.302 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDE--------VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAH 115 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~--------eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae 115 (455)
..+++.++.+...+..++..++.++..+++ +-.++..........|.+-..+|..+..+.... -..+....
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~-v~~L~h~k 83 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKT-VQILTHVK 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456777777777777777777777766554 233444455555555555555555554443322 22334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLe 164 (455)
+++..+..+...++.++......+..+..++..+......+......+.
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555544444444443
No 103
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.4 Score=55.27 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKA 81 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~ 81 (455)
...+++....++.++..++.+++..+..+..+..+++..
T Consensus 256 ~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~ 294 (1200)
T KOG0964|consen 256 YIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKAR 294 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777766666665554
No 104
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.44 E-value=0.64 Score=44.79 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012833 178 ERALKVAEEEMMRAKFEA 195 (455)
Q Consensus 178 E~~Lq~lEeeL~kaq~E~ 195 (455)
+++++.+.+.+.....+.
T Consensus 149 EkKl~~l~~~lE~keaqL 166 (201)
T PF13851_consen 149 EKKLQALSEQLEKKEAQL 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444443333333
No 105
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=96.43 E-value=0.68 Score=45.73 Aligned_cols=7 Identities=0% Similarity=0.292 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 012833 173 KIRKTER 179 (455)
Q Consensus 173 kI~elE~ 179 (455)
.++.+..
T Consensus 132 Rl~~L~~ 138 (251)
T PF11932_consen 132 RLARLRA 138 (251)
T ss_pred HHHHHHH
Confidence 3333333
No 106
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.41 E-value=0.42 Score=48.89 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND-------EQKSKIRKTERALKV 183 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~e-------EqekkI~elE~~Lq~ 183 (455)
...|+.+|..|..++.+-..+...+.+++..|-++..+++.++..+..+.++|...+. .+..++.+++.+...
T Consensus 208 L~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 208 LSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444443333333333 333333444444444
Q ss_pred HHHHHHHHHHHHh
Q 012833 184 AEEEMMRAKFEAT 196 (455)
Q Consensus 184 lEeeL~kaq~E~~ 196 (455)
....+..+++++.
T Consensus 288 ~~~mL~EaQEElk 300 (306)
T PF04849_consen 288 CMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444554444
No 107
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.37 E-value=0.38 Score=54.92 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~Lk 129 (455)
.......++.+...++.+.++....+....+.++....++.+++..|.+|+. ++..+++--...+
T Consensus 587 ~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~---------------eL~~~keS~s~~E 651 (769)
T PF05911_consen 587 DTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQS---------------ELESAKESNSLAE 651 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH
Confidence 3344444444555554444444444444444444444444444444444443 3333334444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (455)
Q Consensus 130 keLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E 194 (455)
.++.........++.++..++.+++++..++..|+.+++.-...-.++..+-..++.++.+...+
T Consensus 652 ~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 652 TQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKE 716 (769)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcc
Confidence 55555556666666777777777777777777777777766666666666677777777766554
No 108
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.36 E-value=3.1 Score=48.78 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=13.6
Q ss_pred HHhhhhhhHHHHHHhhccchhHhHHHhhcch
Q 012833 320 EAKKFSKPYIDQVATVAKPHVDNVRVALKPY 350 (455)
Q Consensus 320 e~k~~~~py~~qa~~~~~p~~~~~~~~~~P~ 350 (455)
..+.-+.-+++..-.-..+++..+...++-.
T Consensus 643 ~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~ 673 (1041)
T KOG0243|consen 643 VLKKDSESCLEVINSSITSSINELESMLETI 673 (1041)
T ss_pred HHhhhHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 109
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=96.35 E-value=1.1 Score=43.27 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012833 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN 127 (455)
Q Consensus 48 ~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~ 127 (455)
..++.-|..++..+......+......-..++..+.+.+..+...+.+....-..+.. .-.-.+-.+...++.++..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~e---dLAr~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGRE---DLAREALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888888888888888888888888877655444432 2223444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (455)
Q Consensus 128 LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~ 167 (455)
++..++........+...+..++.++.++..+...+....
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555554444333
No 110
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.31 E-value=0.11 Score=53.29 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (455)
Q Consensus 115 e~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E 194 (455)
.+++..++.+..++.++++.++.+.+.++.++..++.+..++...-+..-.....++.++.+..++.+.++.++.....+
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred Hhhh
Q 012833 195 ATSR 198 (455)
Q Consensus 195 ~~~~ 198 (455)
...+
T Consensus 129 L~~L 132 (314)
T PF04111_consen 129 LDRL 132 (314)
T ss_dssp HHCH
T ss_pred HHHH
Confidence 4433
No 111
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.29 E-value=0.7 Score=53.48 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhh
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSL------QKELSSLQKK 102 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eL------q~eI~sLQkK 102 (455)
++|...-.+|..|+..-..++...+...+.|..+++.++...+.+..+ .++|..+..+
T Consensus 174 ~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k 237 (1072)
T KOG0979|consen 174 EELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKK 237 (1072)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666666666666666666677777777777777666666544 4455555433
No 112
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.28 E-value=0.11 Score=53.34 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 117 ~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
+..++..++..|+++.+.+..++..++.+..+++.+-.+.-.....++....+.+...+.++.++......+.+++.
T Consensus 58 Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 58 EEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555555555555555555555555555555555666666666666666666666666666766654
No 113
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=96.26 E-value=1 Score=42.08 Aligned_cols=128 Identities=16% Similarity=0.278 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~Lk 129 (455)
.+.++..++.++.++..++...-.+...++..-......+.+.+.... ...++.+-.|-++..++.-++.-++
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~-------~ysE~dik~AYe~A~~lQ~~L~~~r 97 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFD-------RYSEEDIKEAYEEAHELQVRLAMLR 97 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------ccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444444444444444444444444333 2235566666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (455)
Q Consensus 130 keLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~l 184 (455)
.+-..+......|+-++..++.-+...+..+..+.-.++=+...+..+...++.+
T Consensus 98 e~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 98 EREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666666666666655555555555555555554444444444444443
No 114
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.23 E-value=0.9 Score=48.79 Aligned_cols=43 Identities=14% Similarity=0.324 Sum_probs=32.3
Q ss_pred cchhHhHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 337 KPHVDNVRVALKPYTKKVVRAYGKFLKSATTYHHQVQASVQEM 379 (455)
Q Consensus 337 ~p~~~~~~~~~~P~~~~v~~~~~~~~~~a~~~h~q~q~~~~~~ 379 (455)
.=-+|++...+--|-.++....--++.-++.+|--+|+++.|.
T Consensus 564 ~i~ld~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~IQssledl 606 (622)
T COG5185 564 EIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDL 606 (622)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhHHHH
Confidence 3345677777777777777777777888888998899888764
No 115
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.22 E-value=1.7 Score=49.51 Aligned_cols=88 Identities=19% Similarity=0.277 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 81 AIQDKSERIVSLQKELSSLQKKETLN---AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (455)
Q Consensus 81 ~I~e~e~~I~eLq~eI~sLQkK~s~~---~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Ele 157 (455)
++.+++..+.+++.+++.++...... .++.-..++....++..|+..++-.+-..+...+.+..+++++|++-.++.
T Consensus 285 ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al 364 (1265)
T KOG0976|consen 285 ELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMAL 364 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 33444445555555555554322111 122222344455555566666665555555555555555666665555554
Q ss_pred HHHHHHHHHHH
Q 012833 158 AKLEKLQKIND 168 (455)
Q Consensus 158 skveeLek~~e 168 (455)
..+..++..++
T Consensus 365 ~dvr~i~e~k~ 375 (1265)
T KOG0976|consen 365 MDVRSIQEKKE 375 (1265)
T ss_pred HhHHHHHHHHH
Confidence 44444444333
No 116
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.22 E-value=0.85 Score=40.86 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLS----AKLEKLQKINDEQKSKIRKTERALKVA 184 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeLEae~~elEkkl~Ele----skveeLek~~eEqekkI~elE~~Lq~l 184 (455)
+..++.++...+..+..+...+..+...+...+ .....|+..+.+.+.+++++..+-.-+
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333332222 223334444444444444444443333
No 117
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.21 E-value=0.93 Score=52.02 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=19.4
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 63 ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
.+.++++.+..|+.++...-+.++.++..+++.|.+++.
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkE 438 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKE 438 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555543
No 118
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.20 E-value=0.65 Score=49.95 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012833 171 KSKIRKTERALKVAEEEMMRAK 192 (455)
Q Consensus 171 ekkI~elE~~Lq~lEeeL~kaq 192 (455)
+.++..++++.+..+..+..+.
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~l~ 375 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQLL 375 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 119
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.13 E-value=0.98 Score=54.94 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcccccc
Q 012833 360 KFLKSATTYHHQVQASVQEMLKKHELTSPLATK 392 (455)
Q Consensus 360 ~~~~~a~~~h~q~q~~~~~~l~~~e~~~~~a~~ 392 (455)
+++..+-..=.-.|+.|...|..-.|+-.|.+-
T Consensus 606 ~l~df~e~v~~~~ra~IEaAL~~~GLLDA~v~p 638 (1353)
T TIGR02680 606 QLVDFADDVPADVRAGLEAALEAAGLLDAWVTA 638 (1353)
T ss_pred hheecCCCCCHHHHHHHHHHHHHCCCcceeeCC
Confidence 344444444456789999999999999887443
No 120
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.13 E-value=1.5 Score=42.69 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~Lk 129 (455)
++.++...+.++.++...+..+.....+....|.+.++.|..+-.+- +.+-...+.++.++.
T Consensus 14 ~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~------------------~~~~~~~~~~i~~~~ 75 (207)
T PF05010_consen 14 VQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEK------------------QKQKELSEAEIQKLL 75 (207)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------------HhhHHhHHHHHHHHH
Confidence 44444444444455555555544444445555555554444433321 111222233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (455)
Q Consensus 130 keLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E 194 (455)
.+.+....++..++.-..++-.+......-++.+...-+.+.+.+.++...+...+..+..++..
T Consensus 76 ~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~h 140 (207)
T PF05010_consen 76 KERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAH 140 (207)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444433
No 121
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.11 E-value=1.3 Score=51.00 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=19.2
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 012833 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGK 71 (455)
Q Consensus 39 ~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k 71 (455)
.+..+++++.+|..++..|+-+.+|=...+.++
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR~EDk~Kl~El 257 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKRAEDKAKLKEL 257 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 334477777777777776665555444444433
No 122
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.09 E-value=1 Score=44.57 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 114 Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
.+.++..+...++.++++++..+..+.++...+......+.......+.......+....+...+..+..++..+...+.
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~ 147 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444333333333333444444444444445555554444444444433
No 123
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.07 E-value=1.2 Score=54.78 Aligned_cols=125 Identities=21% Similarity=0.269 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 74 VVAQKEKAIQDKSERIVSLQKELSSLQKKETLN------AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAI 147 (455)
Q Consensus 74 eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~------~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~ 147 (455)
.+..+.+.|.-...++.+|...-..++.-+... ...++..++..+..++.+++.|+++..-+..-...|-.+..
T Consensus 690 kle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~ 769 (1822)
T KOG4674|consen 690 KLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELE 769 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333322 22366677778888888888888777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 148 EAEKKISDLSAKLEKLQKINDEQKSKI----RKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 148 elEkkl~EleskveeLek~~eEqekkI----~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
.+..+...+...+..++.....++.-. +.++.++..++.++.+++......
T Consensus 770 ~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~ 824 (1822)
T KOG4674|consen 770 KLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEK 824 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776666666555433322 334445555555555555544433
No 124
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.06 E-value=0.91 Score=53.26 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (455)
Q Consensus 53 kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~ 103 (455)
-|.+..+.|....+.|...+++...-|.......+.+.+|...++.|+.+.
T Consensus 1585 ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1585 AIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555556666666655555444
No 125
>PRK11281 hypothetical protein; Provisional
Probab=96.04 E-value=1.1 Score=53.32 Aligned_cols=112 Identities=14% Similarity=0.181 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ--------QKEKEALEARAIEA 149 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~--------~~e~eeLEae~~el 149 (455)
+|..+.+.+.++++.+..++++++.... .+.+-..+.+++.+...+++.+.+++... ......++++..-+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~-~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l 204 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVS-LQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALL 204 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 3334444444444444444444333322 23334444444444444444444444321 12233344444444
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 150 EKKISDLSAK-------LEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 150 Ekkl~Elesk-------veeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
+.+....... .+-.+...+....+++.++..++.+++.+..
T Consensus 205 ~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 205 NAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333333333 3333444444445555555555555544444
No 126
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.97 E-value=0.44 Score=42.45 Aligned_cols=7 Identities=43% Similarity=0.785 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 012833 50 LKSKIRS 56 (455)
Q Consensus 50 lr~kI~~ 56 (455)
+.+.|.+
T Consensus 21 L~s~lr~ 27 (120)
T PF12325_consen 21 LQSQLRR 27 (120)
T ss_pred HHHHHHH
Confidence 3333333
No 127
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.96 E-value=1.4 Score=48.67 Aligned_cols=121 Identities=23% Similarity=0.333 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAAE-----------------QVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~e-----------------ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
....+...++.|..|+..|...+++....... ++..++.+|..|+.+++.|..++...+....
T Consensus 194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34455555566666666655555544333111 4555666666666666666655555443332
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 141 --------ALEARAIEAEKKISDLSAKLE----KLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 141 --------eLEae~~elEkkl~Eleskve----eLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
.+...+...+..+..+...++ .+....+....+|..++..+.....+++.++..++..
T Consensus 274 ~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 274 LAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred hccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333334444555555444443 3444555666777777777777777777776666543
No 128
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.93 E-value=0.89 Score=54.00 Aligned_cols=64 Identities=8% Similarity=0.070 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Q 012833 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (455)
Q Consensus 139 ~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei 202 (455)
...++++..-++.++..++......+...+-.+.+.+-...+++..+.+++.++...+.+..+.
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~ 238 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQRE 238 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666666666666666554444
No 129
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.90 E-value=2.7 Score=44.49 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNL 128 (455)
Q Consensus 114 Ae~~i~eLe~qIe~L 128 (455)
+..++.+++.++..+
T Consensus 259 l~~~l~~le~~l~~l 273 (444)
T TIGR03017 259 LKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 130
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=95.89 E-value=0.015 Score=59.53 Aligned_cols=124 Identities=17% Similarity=0.280 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe 126 (455)
|..++.++..|+..+..+...+......|.+++..|......|.+++.+|.++.. .|..++..+.
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLss---------------tV~~lq~Sl~ 94 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSS---------------TVTSLQSSLS 94 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 3444455555555555444444444444444444444444444444444444432 2222333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (455)
Q Consensus 127 ~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lE 185 (455)
.+...+..+...+...+..+..+...++.+...+.+|+..+..+.-.|..++++++.+|
T Consensus 95 ~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 95 SLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 44444444444444444444445455555555555555555555555555555555443
No 131
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.84 E-value=2.3 Score=42.63 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 169 EQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 169 EqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
...+.+....+.++.++++|..++.+...+
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555444443
No 132
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.83 E-value=1.1 Score=52.82 Aligned_cols=95 Identities=20% Similarity=0.249 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ-KELSSLQKKETLNAAEQVDKAHARADEL 121 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq-~eI~sLQkK~s~~~~eei~~Ae~~i~eL 121 (455)
+.+.+.+....+..+..+...+ ++++...++++..|.++.....+++ .++..+|...+.. +++....+++...+
T Consensus 439 le~~l~~~~~~~~~~~~~~~~~----~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~-~ek~~~~~~~~~~l 513 (1317)
T KOG0612|consen 439 LEQSLVNEMQEKEKLDEKCQAV----AELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEV-EEKLSEEEAKKRKL 513 (1317)
T ss_pred cccchhhHHHHhhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHH
Confidence 3333333334444444444333 3666777778888888877777777 4666666665553 55666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012833 122 EKQIDNLKKESEKQQKEKEAL 142 (455)
Q Consensus 122 e~qIe~LkkeLE~~~~e~eeL 142 (455)
..++..++.+++..+......
T Consensus 514 ~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 514 EALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666665544433
No 133
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.82 E-value=0.57 Score=51.37 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK--------SERIVSLQKELSSLQKKETLNAAEQVDKAH 115 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~--------e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae 115 (455)
+.+|.+|+..|+..-.++.-++.+=..++.+|..+......- +.+|.+.-.-|++..++.... +.++..+.
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~-e~ei~kl~ 119 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKL-EIEITKLR 119 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhH
Confidence 445555555555555555444444444444444444332222 223333333333332222221 22333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEe 186 (455)
.++.++.....+..+....-..++..+...+.+++.+++-+...+..++.++..+..++..+...|..+..
T Consensus 120 ~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 120 EELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44444444444444444444444455555566666666666666666666666666666666665555543
No 134
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.81 E-value=1.2 Score=49.14 Aligned_cols=20 Identities=10% Similarity=0.346 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHID 62 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ 62 (455)
...++++++.++.+....+.
T Consensus 250 i~~~i~~i~~~l~~~~~~L~ 269 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLK 269 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566666655555544443
No 135
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.81 E-value=0.69 Score=40.33 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (455)
Q Consensus 117 ~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~el 149 (455)
++.+|+.+|+++...++..+.-+..++.++...
T Consensus 59 r~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~ 91 (107)
T PF09304_consen 59 RIAELQAKIDEARRNLEDEKQAKLELESRLLKA 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333333333333
No 136
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.78 E-value=2.4 Score=50.17 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=29.4
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012833 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN 106 (455)
Q Consensus 66 ~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~ 106 (455)
++++..++...+.+..++.++.++.+++.+++.+|++....
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677777777777777888888887777666554
No 137
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.78 E-value=1.3 Score=43.91 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKG 70 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~ 70 (455)
|..++.++.++....+.+..+|++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 138
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.74 E-value=1 Score=49.87 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 012833 48 DQLKSKIRSLESHIDEKTQELKG 70 (455)
Q Consensus 48 ~~lr~kI~~Leski~ele~eI~~ 70 (455)
..++.++..++++|+.+...|.+
T Consensus 192 ~~~~~q~~~le~ki~~lq~a~~~ 214 (629)
T KOG0963|consen 192 QNLQEQLEELEKKISSLQSAIED 214 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444443333
No 139
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.73 E-value=1.1 Score=52.25 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV 183 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~ 183 (455)
.++..+|.+...-+..++.......+++++...++..+.+.......|...+.+......++...++.
T Consensus 381 ~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~ 448 (1141)
T KOG0018|consen 381 EELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDS 448 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence 34444444444444444444444445555555544444444444443433333333333333333333
No 140
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.68 E-value=0.65 Score=41.35 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
+...|+.++.++..++.++..++
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~ 43 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLE 43 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 141
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=95.67 E-value=0.021 Score=58.53 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
++..+|..++.-+..|...+..+.+.|.++...|..+...|.+....|..++.+|..++.
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~ 91 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQS 91 (326)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444444444444444444444444444444444444444444444444443
No 142
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.67 E-value=0.23 Score=48.06 Aligned_cols=50 Identities=14% Similarity=0.257 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 144 ae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
++..++..++++.++.+.+|+.++++++.++..++.++..++.++...+.
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444445555555555555555554444444444443
No 143
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.60 E-value=1.7 Score=49.34 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI 96 (455)
.+.+|..|+.++..++.++..+..-|....+++++.+..|++.+..+..+.+++
T Consensus 104 ~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 104 HESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456666677777777777776666666666666666666666665555554444
No 144
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.59 E-value=2.2 Score=49.58 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ 83 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~ 83 (455)
-.+|-+++.+-.+|+.....-+..|+.+.+++..++..++
T Consensus 180 h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE 219 (1072)
T KOG0979|consen 180 HIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVE 219 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666655544
No 145
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.56 E-value=3.3 Score=42.48 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQ-KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR-KTERALKVAEEEMMR 190 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~-~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~-elE~~Lq~lEeeL~k 190 (455)
.+..++..+..+...|...++.-. .....|..++..++.........++.|.....+++..+. +.+.-+..+...+.+
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~ 189 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDK 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554422 223344444444444444444444444444444443332 222222333444445
Q ss_pred HHHHHhhhhHhhhhhccccCCh
Q 012833 191 AKFEATSRSKELTEVHSAWLPP 212 (455)
Q Consensus 191 aq~E~~~~a~ei~~~gGawl~P 212 (455)
+..+...++.++..++.....|
T Consensus 190 l~~eKr~Lq~~l~~~~s~~~s~ 211 (310)
T PF09755_consen 190 LEAEKRRLQEKLEQPVSAPPSP 211 (310)
T ss_pred HHHHHHHHHHHHccccCCCCCc
Confidence 5555555555554444333333
No 146
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.50 E-value=0.0037 Score=72.02 Aligned_cols=100 Identities=20% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 61 i~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
+.++..+|+........++..-...+..+.+|...++++++.... .+.....++.++.+++..++.....+..+...+.
T Consensus 133 ~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~-~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~ 211 (859)
T PF01576_consen 133 VAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQE-AEKKRKQLEAQLNELQAKLEESERQRNELTEQKA 211 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555555555432222 1333334444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLE 161 (455)
Q Consensus 141 eLEae~~elEkkl~Eleskve 161 (455)
.+.++..++...+.+.+..+.
T Consensus 212 kL~~E~~eL~~qLee~e~~~~ 232 (859)
T PF01576_consen 212 KLQSENSELTRQLEEAESQLS 232 (859)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444443333333333333333
No 147
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.48 E-value=1.7 Score=47.14 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhcccCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhc
Q 012833 368 YHHQVQASVQEMLKKHELTSPLATKELEWFAQSKLLVIQLLQASALLVLPVIILFRIGS-AIFCKK 432 (455)
Q Consensus 368 ~h~q~q~~~~~~l~~~e~~~~~a~~el~w~~~~~~~~~~~~~asal~~~p~~~~~~~~~-~~~~~~ 432 (455)
+-...|..|+..-.+-|+.++=+|.-- ++ .-|.++|=|-=+--++ +.||.+
T Consensus 459 ~~~e~q~~~q~l~~q~~l~sgs~t~t~--~l------------~~l~t~~~f~E~~~~e~~asc~R 510 (596)
T KOG4360|consen 459 FLEEMQRKVQTLAQQPELSSGSATPTE--SL------------VSLETLPGFSETTAEELRASCRR 510 (596)
T ss_pred ccHHHHHHHHHHHhcCCCCCCCCCCCc--hh------------hhhhcccchHHHHHHHHHHHHHh
Confidence 344677788888888899888877532 22 2355666555555555 678843
No 148
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=3.2 Score=46.96 Aligned_cols=94 Identities=26% Similarity=0.273 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
.+.....++.++.+...+.........++..+...+....+...++....+.|+...+...+++.+++........++..
T Consensus 519 ~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~ 598 (698)
T KOG0978|consen 519 VDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEI 598 (698)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555556666666666666666666666666666666666666666
Q ss_pred HHHHHhhhhHhhhh
Q 012833 191 AKFEATSRSKELTE 204 (455)
Q Consensus 191 aq~E~~~~a~ei~~ 204 (455)
.......+..++..
T Consensus 599 ~~~k~~rleEE~e~ 612 (698)
T KOG0978|consen 599 EKFKRKRLEEELER 612 (698)
T ss_pred HHHHHHHHHHHHHH
Confidence 65555555544444
No 149
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.44 E-value=0.004 Score=71.74 Aligned_cols=159 Identities=21% Similarity=0.318 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------------HH
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN-------------AA 108 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~-------------~~ 108 (455)
.+..+++..+..+..++.....+..++++...++..........++....+...+.....+.... ..
T Consensus 332 el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~ 411 (859)
T PF01576_consen 332 ELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELE 411 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34555556666666666666666666666555555554444444444344444443333322211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (455)
Q Consensus 109 eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL 188 (455)
.++..+...+.++..+++.++++...+..++..+.....+..+.+.+++.....|+..+++++..+.+++..++..+...
T Consensus 412 te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~ 491 (859)
T PF01576_consen 412 TELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKK 491 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13444444444444444444444444444454555555555555666666666777777777777777777777777777
Q ss_pred HHHHHHHhhhhH
Q 012833 189 MRAKFEATSRSK 200 (455)
Q Consensus 189 ~kaq~E~~~~a~ 200 (455)
.+++.++.....
T Consensus 492 lRl~~el~~~r~ 503 (859)
T PF01576_consen 492 LRLQVELQQLRQ 503 (859)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 777776665543
No 150
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.42 E-value=1.4 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=8.5
Q ss_pred HHHHHHhhhchHHHHHHHHHHH
Q 012833 61 IDEKTQELKGKDEVVAQKEKAI 82 (455)
Q Consensus 61 i~ele~eI~~k~~eIk~~e~~I 82 (455)
+.++..++...+.+|.+++..|
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 151
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.36 E-value=1.6 Score=43.25 Aligned_cols=121 Identities=19% Similarity=0.327 Sum_probs=56.0
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 61 i~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
..+++..+....++.......+.+.+..+..|..+....+ +....++.+..+++..+.+|+....
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~ae--------eea~~Le~k~~eaee~~~rL~~~~~------- 71 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAE--------EEAEELEQKRQEAEEEKQRLEEEAE------- 71 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3344444444444444444444444444444444333332 2222333344444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
....+...++.++.++...+..|.............++.++..+...+.++..++.
T Consensus 72 ~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~ 127 (246)
T PF00769_consen 72 MQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELL 127 (246)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666666666666667777777777767666666665553
No 152
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.35 E-value=3.2 Score=44.77 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNLKKESEKQQ---KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~LkkeLE~~~---~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~e 176 (455)
+..-+++|..|.++++.|..+++.+. ++.+...++...+-..++..+.+.++|.+.+-+.+-.++.
T Consensus 339 ie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~ 407 (622)
T COG5185 339 IELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQG 407 (622)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHH
Confidence 33444444444444444444444442 2223444555555555555555556655555544444433
No 153
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=95.34 E-value=0.2 Score=40.77 Aligned_cols=67 Identities=43% Similarity=0.534 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 79 EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (455)
Q Consensus 79 e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~ 146 (455)
+..|.++...|+.|..+-..|.++... ..+.+.++...+.+++.++..+.+.++....++..++.++
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~-~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELK-LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555544332211 1233334444555555555555555555544444444443
No 154
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.29 E-value=1.1 Score=44.98 Aligned_cols=75 Identities=23% Similarity=0.268 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 124 qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
+...|+.+.-.+-..-+.++.....+.-.+.--+..+.-|+..+...+.+|+.++.++..++.++++.+......
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~ 135 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSG 135 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 334444444444444444444455555555555666677777777778888888888888888888888777643
No 155
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.28 E-value=3 Score=40.17 Aligned_cols=46 Identities=9% Similarity=0.206 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER 88 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~ 88 (455)
+...|.++...|.+++..+......-.....++.+.+..+.+.+..
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444444444444444444444444444443
No 156
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.27 E-value=1.8 Score=44.38 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEKT 65 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele 65 (455)
+++++++.+...+.+++...
T Consensus 87 ~l~~a~a~l~~a~a~l~~~~ 106 (346)
T PRK10476 87 TVAQAQADLALADAQIMTTQ 106 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 157
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.22 E-value=3.1 Score=40.05 Aligned_cols=52 Identities=15% Similarity=0.311 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~ 97 (455)
++..++.+|..++.+.+.-+..+....+.+.+.+..-.+.+..+..+.+...
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~ 56 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQ 56 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555444444333
No 158
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.20 E-value=4.5 Score=41.80 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK--------------LEKLQKINDEQKSKIRKTERAL 181 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Elesk--------------veeLek~~eEqekkI~elE~~L 181 (455)
.++..++.++..|+.++...-.+++++..+......++..++.+ ++.|-.++--++.++..++.+.
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~ 212 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEK 212 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433 3444444445566666666666
Q ss_pred HHHHHHHHHHHHHHh
Q 012833 182 KVAEEEMMRAKFEAT 196 (455)
Q Consensus 182 q~lEeeL~kaq~E~~ 196 (455)
.-+...+.+.+.-+.
T Consensus 213 ~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 213 ELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665444
No 159
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.18 E-value=3.8 Score=46.68 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 117 RADELEKQIDNLKKESEKQQKEKEALE---ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 117 ~i~eLe~qIe~LkkeLE~~~~e~eeLE---ae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
..++|+.+-..|++++..++...-+.| -+...++....-+++.++++..-.+-.+.++++.-..++.-.++-..++.
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~Lrk 177 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRK 177 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544443333 33444444555555555555555555555555544444444444444444
Q ss_pred HHh
Q 012833 194 EAT 196 (455)
Q Consensus 194 E~~ 196 (455)
|+.
T Consensus 178 EL~ 180 (717)
T PF09730_consen 178 ELD 180 (717)
T ss_pred HHH
Confidence 444
No 160
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.14 E-value=4.6 Score=47.17 Aligned_cols=79 Identities=32% Similarity=0.450 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 115 e~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
+.+...++..++.++..+.........+......+..+..+....+.++...+.+......+++..+...+..+..++.
T Consensus 360 ~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~ 438 (908)
T COG0419 360 EERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEE 438 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444322333333333334444444444444444444444444444444444444444443333
No 161
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.13 E-value=1.4 Score=49.46 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkk 152 (455)
.+....+++..++.++.+++.+++....++..++.+...++++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKT 464 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433333333333
No 162
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.11 E-value=0.48 Score=45.91 Aligned_cols=24 Identities=13% Similarity=0.454 Sum_probs=10.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKT 65 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele 65 (455)
..+.++..++.++++++.+++++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 163
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.11 E-value=2.9 Score=39.08 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ 189 (455)
...+++-+...+.+.|++-..++..+......--.-++-...++..+......+...+...+..+..+...+.....+..
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555544444444444555555555555555555555555555555555555555555
Q ss_pred HHHHHHhhhhHhhhhhccccCChHHHHHHHHHHH
Q 012833 190 RAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQS 223 (455)
Q Consensus 190 kaq~E~~~~a~ei~~~gGawl~Pw~~~~~~~~~~ 223 (455)
++...... +...||-+--|=|...+.++..
T Consensus 123 k~~~~~~~----l~~~~~~~~~P~ll~Dy~~~~~ 152 (177)
T PF13870_consen 123 KLRKQNKK----LRQQGGLLGVPALLRDYDKTKE 152 (177)
T ss_pred HHHHHHHH----HHHhcCCCCCcHHHHHHHHHHH
Confidence 54444432 3455677666644444444443
No 164
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.39 Score=52.91 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=6.6
Q ss_pred HHHHhhhhhhHH
Q 012833 260 ETIKAKWIPAVK 271 (455)
Q Consensus 260 ~~~~~k~~p~~~ 271 (455)
++|...=+|++.
T Consensus 584 e~f~~~~iPv~~ 595 (652)
T COG2433 584 EEFFKNEIPVLP 595 (652)
T ss_pred HHHhhcCCceee
Confidence 355555566654
No 165
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=95.07 E-value=0.21 Score=46.45 Aligned_cols=74 Identities=23% Similarity=0.349 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ---------KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKA 114 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~---------~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~A 114 (455)
..++..++.+|.+|+.++.++..+++.+..+++. +...|.+++.+|..++++|..+......+..+++..+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~ 150 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKL 150 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 3455555555555555555555555555555544 3455555555666666666555543333333333333
Q ss_pred HHH
Q 012833 115 HAR 117 (455)
Q Consensus 115 e~~ 117 (455)
...
T Consensus 151 ~~~ 153 (169)
T PF07106_consen 151 EKE 153 (169)
T ss_pred HHH
Confidence 333
No 166
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=94.96 E-value=2.3 Score=42.25 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 114 Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
.+..+..|+.+...++.+-..+......++.....|+............|...+.+....+..+....+.-+.+-..++.
T Consensus 31 ~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~ 110 (246)
T PF00769_consen 31 SEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQE 110 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444454444444444444444444
Q ss_pred HHh
Q 012833 194 EAT 196 (455)
Q Consensus 194 E~~ 196 (455)
++.
T Consensus 111 el~ 113 (246)
T PF00769_consen 111 ELE 113 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 167
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.93 E-value=1.7 Score=42.97 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 012833 145 RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKE 201 (455)
Q Consensus 145 e~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~e 201 (455)
+.......+...+..+..|+..+.+.+..-......+..+.+++..++.+.++...+
T Consensus 47 Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 47 ERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444555555555555555554433
No 168
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.92 E-value=4.6 Score=47.16 Aligned_cols=16 Identities=44% Similarity=0.756 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHID 62 (455)
Q Consensus 47 L~~lr~kI~~Leski~ 62 (455)
.++++.++..+++.+.
T Consensus 554 ~~~l~~e~~~le~~~~ 569 (908)
T COG0419 554 LQQLKEELRQLEDRLQ 569 (908)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555553333333
No 169
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=7.5 Score=42.81 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q 012833 158 AKLEKLQKINDEQKSKIRKTERAL---KVAEEEMMRAKFEAT 196 (455)
Q Consensus 158 skveeLek~~eEqekkI~elE~~L---q~lEeeL~kaq~E~~ 196 (455)
+...+|+.++-.++++...+...- +-+..++.++.++..
T Consensus 170 seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~e 211 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETE 211 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 344455555555555554444332 222355555555443
No 170
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.81 E-value=2 Score=52.43 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVA----QKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk----~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i 118 (455)
...++++++.++..++..+..++.=....+.... ..-.........+..+..++..++.+.... .+++..+++++
T Consensus 228 ~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 306 (1353)
T TIGR02680 228 ALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETA-REEERELDART 306 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4556677778888877777776553333322222 112222333344444555554444433332 34445555555
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 119 DELEKQIDNLKKESEKQQ--------KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 119 ~eLe~qIe~LkkeLE~~~--------~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
..++.+++.++.+++.++ .++..++.++.++.+............+...++....+++.+......+..+..
T Consensus 307 ~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~ 386 (1353)
T TIGR02680 307 EALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRA 386 (1353)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555553 333333344444444444444444444444444444455555555555544444
Q ss_pred HHHHHhhhh
Q 012833 191 AKFEATSRS 199 (455)
Q Consensus 191 aq~E~~~~a 199 (455)
...++...+
T Consensus 387 ~~~el~~~a 395 (1353)
T TIGR02680 387 AREQLARAA 395 (1353)
T ss_pred HHHHHHHHH
Confidence 444444333
No 171
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=94.80 E-value=1.3 Score=48.95 Aligned_cols=144 Identities=20% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 012833 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD 119 (455)
Q Consensus 40 ~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~ 119 (455)
....+..|..|...-..|.=+.+-+..+++..-+.|.++|--|+++..++...++-+ |.+.-+ ..
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmL---Qqells------------rt 170 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEML---QQELLS------------RT 170 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHH---HHHHHh------------hh
Confidence 334444454444444455555555666666666666666666666666555544433 232222 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKI-NDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~-~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
.|+.|.-+|=.++..++-....+|.+..+.|+++...+..++++++. ..+...+--+.+..+..+..++..+++...++
T Consensus 171 sLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK 250 (861)
T KOG1899|consen 171 SLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEK 250 (861)
T ss_pred hHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhh
Confidence 45555555555555555555555555555555555555555555422 33444444455555555555555555444433
No 172
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=94.79 E-value=7.5 Score=42.28 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 74 VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 74 eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
++...+..+......+..+..++..++... +.....+++++..++.--++|..+.+.+..++-
T Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l----e~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~il 123 (475)
T PRK10361 61 ECELLNNEVRSLQSINTSLEADLREVTTRM----EAAQQHADDKIRQMINSEQRLSEQFENLANRIF 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443222 223334455666666666666666665554443
No 173
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=94.78 E-value=2.2 Score=43.08 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=13.4
Q ss_pred hhccccCChHHHHHHHHHHH
Q 012833 204 EVHSAWLPPWLAVHLLQCQS 223 (455)
Q Consensus 204 ~~gGawl~Pw~~~~~~~~~~ 223 (455)
..+++|++.|+-.-+.-+=+
T Consensus 257 ~~~~~~~~~~~i~llfi~ie 276 (301)
T PF14362_consen 257 EDPSALLASLFIFLLFIAIE 276 (301)
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 34467888888776665555
No 174
>PF13166 AAA_13: AAA domain
Probab=94.78 E-value=5.3 Score=44.89 Aligned_cols=15 Identities=7% Similarity=0.177 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhc
Q 012833 369 HHQVQASVQEMLKKH 383 (455)
Q Consensus 369 h~q~q~~~~~~l~~~ 383 (455)
.--+.+.++..|+-+
T Consensus 633 ~~~~~N~~RriLE~y 647 (712)
T PF13166_consen 633 AYNIPNVMRRILEAY 647 (712)
T ss_pred HHhhHHHhHHHHHHH
Confidence 334666677777766
No 175
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.71 E-value=5.2 Score=40.03 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe 126 (455)
..+.+.++...+..-.+++.+++. ++.+++.....++...+-|.-++..+..+ .+.+..+.-.++..|+....
T Consensus 29 f~~~reEl~EFQegSrE~Eaeles---qL~q~etrnrdl~t~nqrl~~E~e~~Kek----~e~q~~q~y~q~s~Leddls 101 (333)
T KOG1853|consen 29 FLQMREELNEFQEGSREIEAELES---QLDQLETRNRDLETRNQRLTTEQERNKEK----QEDQRVQFYQQESQLEDDLS 101 (333)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 344555665555555555543333 44444444444444333333333332111 11233333444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 127 NLKKESEKQQKEKEALEARAIEAEK 151 (455)
Q Consensus 127 ~LkkeLE~~~~e~eeLEae~~elEk 151 (455)
.+....+.+.+.+.+||.....+|.
T Consensus 102 qt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 102 QTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHH
Confidence 5555555555555555555444443
No 176
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=3.3 Score=47.25 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Q 012833 174 IRKTERALKVAEEEMMRAKFEATSRSKEL 202 (455)
Q Consensus 174 I~elE~~Lq~lEeeL~kaq~E~~~~a~ei 202 (455)
+.+...+++..+.++.+.+.+..++-..+
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~t 829 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERT 829 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555443333
No 177
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.64 E-value=4.6 Score=39.11 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I 82 (455)
++.+|.+.+.++++-.+.|-.+..++.+....+...+..+
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~ 54 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQI 54 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444444444444433333333333333333333333333
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.62 E-value=2 Score=46.04 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (455)
Q Consensus 112 ~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lE 185 (455)
..++.++..++..+.++.+++...++.-..+.+.+.....++.+++. .+...+...+.+|.++++++..+-
T Consensus 378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e---~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEE---REKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHh
Confidence 34455556666666666666555554444444444333333333332 233333444445555555555543
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.61 E-value=1.5 Score=43.24 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (455)
Q Consensus 143 Eae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E 194 (455)
..++..+..-++.++.-+...+.+.+..+..+..+.+++..+.+++.++..+
T Consensus 52 ~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 52 VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444455555555555555555555555
No 180
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.56 E-value=3.8 Score=44.98 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=20.6
Q ss_pred cchHHHHHHHHHHHHHHcCccccchHHHHHhhhhhhHHH
Q 012833 234 KPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKE 272 (455)
Q Consensus 234 ~P~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~ 272 (455)
.|+=.+....+-++.-.-|.=-|--++....|..--+..
T Consensus 253 dp~rreia~~~l~~li~dgrihp~riee~~~~~~~~~~~ 291 (514)
T TIGR03319 253 DPVRREIARMALEKLIQDGRIHPARIEEMVEKATKEVDN 291 (514)
T ss_pred chHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 455566666666666655654444444444444444443
No 181
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.48 E-value=11 Score=42.62 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=5.4
Q ss_pred HHHhhhhhhHHH
Q 012833 261 TIKAKWIPAVKE 272 (455)
Q Consensus 261 ~~~~k~~p~~~~ 272 (455)
-|+..|.-+|.+
T Consensus 711 KHK~qYDkiVEE 722 (786)
T PF05483_consen 711 KHKHQYDKIVEE 722 (786)
T ss_pred HhHHHHHHHHHH
Confidence 444444444444
No 182
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.41 E-value=5.3 Score=38.80 Aligned_cols=109 Identities=11% Similarity=0.131 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~Lk 129 (455)
++.-|.+++..+.+....+...-..-+..+..+.+....+.+.+++....-.++... -...+-.+....+.++..|+
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~Ed---LAr~Al~~k~~~~~~~~~l~ 105 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGRED---LARAALIEKQKAQELAEALE 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666666666677777777777777777765544444332 11122223333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (455)
Q Consensus 130 keLE~~~~e~eeLEae~~elEkkl~Eleskve 161 (455)
.+++.+......+...+.+++.++.+...+..
T Consensus 106 ~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 106 RELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 183
>PRK12704 phosphodiesterase; Provisional
Probab=94.38 E-value=4.3 Score=44.67 Aligned_cols=10 Identities=40% Similarity=0.235 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 012833 239 VAIQKALEKK 248 (455)
Q Consensus 239 ~~~~k~~~~~ 248 (455)
+....+-+..
T Consensus 264 e~a~~~l~~l 273 (520)
T PRK12704 264 EIARLALEKL 273 (520)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 184
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=94.36 E-value=5.2 Score=40.46 Aligned_cols=54 Identities=9% Similarity=0.214 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI 96 (455)
+..++++.+..+..++.++..++..+.....++...+..++.....+...+.++
T Consensus 78 ~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~ 131 (334)
T TIGR00998 78 AELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDL 131 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444555555555555554444444444444444444444444333333333
No 185
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.35 E-value=5.4 Score=38.68 Aligned_cols=92 Identities=12% Similarity=0.224 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKES 132 (455)
Q Consensus 53 kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeL 132 (455)
+|+=|..++.+...++..+..+|-.+...+.+....+...+..+..++.... .++-++...++++....++++-|...+
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~-~K~~ELE~ce~ELqr~~~Ea~lLrekl 89 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLR-TKQLELEVCENELQRKKNEAELLREKL 89 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhHhHHHhHHHHHHHhCHHHHhhhhh
Confidence 3444444444444444444444444444444444444444444444432211 123334444444444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 012833 133 EKQQKEKEALEAR 145 (455)
Q Consensus 133 E~~~~e~eeLEae 145 (455)
..+..++..+...
T Consensus 90 ~~le~El~~Lr~~ 102 (202)
T PF06818_consen 90 GQLEAELAELREE 102 (202)
T ss_pred hhhHHHHHHHHHH
Confidence 4444344333333
No 186
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=94.34 E-value=1.1 Score=38.87 Aligned_cols=40 Identities=10% Similarity=0.287 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e 84 (455)
|++.++-.++..++.++..+.+++..++.++.+.+..+.+
T Consensus 3 ~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 3 PQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666655555544444444444333
No 187
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=94.32 E-value=0.25 Score=45.90 Aligned_cols=63 Identities=25% Similarity=0.404 Sum_probs=33.4
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (455)
Q Consensus 68 I~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~ 136 (455)
+.+.+.+|.++..++.+....+..+.+++.+|.+..+. .++...+..++.++..++..++.+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~------~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN------EELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666666666667666554443 2334444444444444444444443
No 188
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.29 E-value=6.2 Score=39.19 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 48 ~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
+.+..+..........+....+..-..-.++...|......|.++-+++..+..
T Consensus 62 ~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 62 ENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 333333333333333344444444444445555555555555555555555543
No 189
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.24 E-value=3 Score=44.69 Aligned_cols=88 Identities=14% Similarity=0.251 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 87 ERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKI 166 (455)
Q Consensus 87 ~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~ 166 (455)
.+..+++++...+++.... .+....+.+.++.+..++...++.....+.++......++.+++...++... ..+..
T Consensus 361 ~e~~~l~~~~~~~e~~kk~-~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~---s~d~~ 436 (493)
T KOG0804|consen 361 TEADSLKQESSDLEAEKKI-VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALG---SKDEK 436 (493)
T ss_pred HHHHhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 3333344444444332222 2445556666666666666666655555555555555555554444433332 33333
Q ss_pred HHHHHHHHHHHH
Q 012833 167 NDEQKSKIRKTE 178 (455)
Q Consensus 167 ~eEqekkI~elE 178 (455)
+.+++.++..+-
T Consensus 437 I~dLqEQlrDlm 448 (493)
T KOG0804|consen 437 ITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHhHh
Confidence 444444444443
No 190
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.18 E-value=9.6 Score=41.91 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKA 81 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~ 81 (455)
.+.++.-++..+...+-.|+...+.|+.+++-|+++...
T Consensus 241 ~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEm 279 (654)
T KOG4809|consen 241 TKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEM 279 (654)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 344455555555555555555555566666655555443
No 191
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.13 E-value=13 Score=42.10 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=24.4
Q ss_pred hHhHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 340 VDNVRVALKPYTKKVVRAYGKFLKSATTYHHQVQASVQEMLK 381 (455)
Q Consensus 340 ~~~~~~~~~P~~~~v~~~~~~~~~~a~~~h~q~q~~~~~~l~ 381 (455)
+..|-..++|....+ ..++.-+.++++.++..-..+.+-|.
T Consensus 632 ~q~v~~TTrPLlRQI-E~lQ~tl~~~~tawereE~~l~~rL~ 672 (961)
T KOG4673|consen 632 IQQVPETTRPLLRQI-EALQETLSKAATAWEREERSLNERLS 672 (961)
T ss_pred HhhccccccHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 334444555555444 45677777777777765555555554
No 192
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=94.12 E-value=1.4 Score=39.48 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKA 81 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~ 81 (455)
.++|.++...+.+++..++.+.+++......+.+....
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~ 42 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTA 42 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666555544444444333
No 193
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=1.6 Score=38.86 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~ 87 (455)
.+++.+.=.++.+|+.+++.+.-+....+.+|+++++.+.+.+.
T Consensus 5 pp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 5 PPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36666666777777777777766666666666665555555443
No 194
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.03 E-value=3.9 Score=40.34 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI 96 (455)
++++.....+....-....+.++..+++...+...++..+.++..++...
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~ 72 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYN 72 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333444444444444444444444444444444433
No 195
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.03 E-value=5 Score=44.30 Aligned_cols=43 Identities=5% Similarity=0.017 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~ 85 (455)
+..+..++..++..+..++.++..+..+..+++..++.++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555544444444444444444444443
No 196
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=1 Score=49.74 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKIS 154 (455)
Q Consensus 108 ~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~ 154 (455)
.+.+....+.+..|+.++..|+.+++.++.+++.|++++.++..++.
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666655443
No 197
>PF13166 AAA_13: AAA domain
Probab=94.01 E-value=6.3 Score=44.27 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 157 SAKLEKLQKINDEQKSKIRKTERA 180 (455)
Q Consensus 157 eskveeLek~~eEqekkI~elE~~ 180 (455)
...+..++..+...+..+.+++.+
T Consensus 430 ~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 430 EKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 198
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.98 E-value=3.4 Score=43.73 Aligned_cols=145 Identities=17% Similarity=0.258 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDE--VVA--QKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD 119 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~--eIk--~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~ 119 (455)
..++++++..+...+.+..+.......... .+. .....|.....++.+++.++..+...... .--.+-.++.++.
T Consensus 214 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~-~hP~v~~l~~~i~ 292 (444)
T TIGR03017 214 RARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGP-NHPQYKRAQAEIN 292 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHH
Confidence 345666666666666555544443322100 000 01123444445555555555444322211 1114445555555
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 120 ELEKQIDNL-KKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 120 eLe~qIe~L-kkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
.++.++... .+.......+...+..+..+++..+++++..+..+... ..++..++++.+..+..+..+-.
T Consensus 293 ~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~----~~~~~~L~r~~~~~~~~y~~ll~ 363 (444)
T TIGR03017 293 SLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQ----RDEMSVLQRDVENAQRAYDAAMQ 363 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554332 11112222233333444444444444444443333332 33444555555555544444333
No 199
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.94 E-value=0.016 Score=65.53 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=0.0
Q ss_pred HhhhcchhHHHH
Q 012833 299 TKTAVTPHIIRV 310 (455)
Q Consensus 299 ~k~~~~p~~~~~ 310 (455)
.+..+..|+.++
T Consensus 538 lk~~le~~~~~l 549 (713)
T PF05622_consen 538 LKQKLEEHLEKL 549 (713)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344455555544
No 200
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.90 E-value=3.1 Score=37.80 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 012833 180 ALKVAEEEMMRAK 192 (455)
Q Consensus 180 ~Lq~lEeeL~kaq 192 (455)
++..-+.++.+++
T Consensus 134 e~rkke~E~~kLk 146 (151)
T PF11559_consen 134 ELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 201
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=93.89 E-value=4.7 Score=41.70 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 012833 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNA-AEQVDKAHARADELEKQIDNLKKESEKQQKE-------KEALE 143 (455)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~-~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e-------~eeLE 143 (455)
.+.+.-++.++.+....+.+.+.++...+++...+. +.+.......+..++.++..++.++..+... ...+.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~ 248 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQ 248 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHH
Confidence 345556666777777777777777777666554432 2223334445666666666666555544322 22455
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 144 ARAIEAEKKISDLSAKLEKL-QKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 144 ae~~elEkkl~EleskveeL-ek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
++...++.++.+..+++..- .........++.+++.+.+..+..+..+-....+.
T Consensus 249 ~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 249 ARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQT 304 (362)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556655555554444221 11233444455666666666555555444444433
No 202
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=93.87 E-value=3.6 Score=43.71 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (455)
Q Consensus 114 Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~el 149 (455)
..+.+.+.|.++.+|+++...++++.-..++....+
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~ 81 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERVREEATEKTL 81 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666555544443333
No 203
>PF13514 AAA_27: AAA domain
Probab=93.84 E-value=5.6 Score=47.50 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (455)
Q Consensus 148 elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lE 185 (455)
+++..+.+++..++.++..++++...+..++..+..++
T Consensus 893 ~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~ 930 (1111)
T PF13514_consen 893 ELEAELEELEEELEELEEELEELQEERAELEQELEALE 930 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444443
No 204
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.84 E-value=9 Score=39.76 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=56.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 67 ELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA------EQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 67 eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~------eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
.|.+.++.+.++-..+++...+-..|+..=+.|-+...-..+ .....++.-+..++++-..++-.++++..+..
T Consensus 79 k~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 79 KITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECG 158 (401)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 344556666666666666666666665544444333222211 12223333333333444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKI-----------NDEQKSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~-----------~eEqekkI~elE~~Lq~lEeeL~ 189 (455)
+.+.+..++..++.|.-.-...|.+. ++..+..|.+++.+.+++.-|+.
T Consensus 159 Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eir 218 (401)
T PF06785_consen 159 EKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIR 218 (401)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333333332 33455555666666665544443
No 205
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.81 E-value=8.9 Score=39.21 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~ 103 (455)
++..-.-|-.+++..++.++++..++-..-+.++++.--+..++.++...|-.+
T Consensus 142 lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~ 195 (305)
T PF14915_consen 142 LKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQI 195 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444555555555555555555555554444333
No 206
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=93.78 E-value=6.6 Score=37.65 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEee 187 (455)
....+..-......++..|+.-+...+..+...+.-.......+.+-...++..+..++.+..++.....+++.++..
T Consensus 96 na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~a 173 (188)
T PF05335_consen 96 NAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKA 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667777777777766666666666666666666666666666555555555555555555555443
No 207
>PRK09343 prefoldin subunit beta; Provisional
Probab=93.77 E-value=1.8 Score=38.45 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEK 80 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~ 80 (455)
+.+++.+.-.++..++.++..+..++..++.++.+.+.
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~ 42 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINK 42 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444444433333
No 208
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.68 E-value=7.8 Score=42.50 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012833 109 EQVDKAHARADELEKQIDNLK 129 (455)
Q Consensus 109 eei~~Ae~~i~eLe~qIe~Lk 129 (455)
.-+..+++....|..+|+.++
T Consensus 316 ~~l~k~ke~n~~L~~Eie~V~ 336 (570)
T COG4477 316 DYLEKAKENNEHLKEEIERVK 336 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554
No 209
>PRK00106 hypothetical protein; Provisional
Probab=93.58 E-value=8 Score=42.74 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=17.3
Q ss_pred cchHHHHHHHHHHHHHHcCccccchHHHHHhhhhhhHH
Q 012833 234 KPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVK 271 (455)
Q Consensus 234 ~P~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~ 271 (455)
.|+=.+....+-++.-.-|.==|--++....|...-+.
T Consensus 274 dpvRReiAr~~le~Li~dgrIhp~rIEe~v~k~~~e~~ 311 (535)
T PRK00106 274 DPIRREIARMTLESLIKDGRIHPARIEELVEKNRLEMD 311 (535)
T ss_pred ChHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444344444444333333
No 210
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.45 E-value=11 Score=38.94 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 012833 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (455)
Q Consensus 48 ~~lr~kI~~Leski~ele~eI~~k~~eIk~~ 78 (455)
++++..+..|+.+-..+..++.......+.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L 53 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHL 53 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5555666666555444444444433333333
No 211
>PHA03332 membrane glycoprotein; Provisional
Probab=93.21 E-value=2.9 Score=48.91 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012833 109 EQVDKAHARADELEKQID 126 (455)
Q Consensus 109 eei~~Ae~~i~eLe~qIe 126 (455)
+.|+..+.||++|++++.
T Consensus 930 ~nI~avNgRIs~Led~VN 947 (1328)
T PHA03332 930 NNIRAVNGRVSDLEDQVN 947 (1328)
T ss_pred hhHHHhcccHHHHHHHHH
Confidence 445555555555555554
No 212
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=93.19 E-value=10 Score=38.07 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (455)
Q Consensus 152 kl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~ 195 (455)
..+++...+++|...++..+..|--++++|+..+.+|++++...
T Consensus 258 sq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 258 SQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred hHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444455555555555544433
No 213
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.18 E-value=5 Score=40.52 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 150 EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (455)
Q Consensus 150 Ekkl~EleskveeLek~~eEqekkI~elE~~Lq~lE 185 (455)
|..++-++..+......++.++..+..++.+++..+
T Consensus 94 e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 214
>PRK10698 phage shock protein PspA; Provisional
Probab=93.17 E-value=9.1 Score=37.43 Aligned_cols=112 Identities=17% Similarity=0.163 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHHHH
Q 012833 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAE----QVDKAHARADELEKQ 124 (455)
Q Consensus 49 ~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~e----ei~~Ae~~i~eLe~q 124 (455)
.++.=|.+++..+.++.+.+...-..-+.++..+.+....+.+.+.+-...-.++....-. +-..+.+++..|+.+
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~ 107 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHE 107 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666677777777777777777664444444332111 122344455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeLEae~~elEkkl~Eleskv 160 (455)
++.....++.+...+..|+.++.+++.+...+..+.
T Consensus 108 ~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 108 VTLVDETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555444444433
No 215
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.14 E-value=8.6 Score=38.90 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKG 70 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~ 70 (455)
..+.+++..+...+.++..+...++.
T Consensus 55 ~~~~~a~a~l~~a~a~~~~~~~~~~~ 80 (327)
T TIGR02971 55 AELDVARTQLDEAKARLAQVRAGAKK 80 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccH
Confidence 45556666666666666655544433
No 216
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=93.10 E-value=6.7 Score=35.65 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 012833 52 SKIRSLESHIDEKTQELKG 70 (455)
Q Consensus 52 ~kI~~Leski~ele~eI~~ 70 (455)
..++.+...+.++...+..
T Consensus 5 ~~~~~l~~~~~~l~~~l~~ 23 (202)
T PF01442_consen 5 DRLDSLSSRTEELEERLEE 23 (202)
T ss_dssp HHHHHHHHHHHHHHHCHCS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 217
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=93.09 E-value=6.7 Score=35.65 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=16.8
Q ss_pred hHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhh
Q 012833 284 HVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFS 325 (455)
Q Consensus 284 ~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~ 325 (455)
+++.++..+......+...+..++..+.+.++..+..++...
T Consensus 134 ~l~~~~~~l~~~~~~~~~~i~~~~~~l~~~l~~~~~~l~~~l 175 (202)
T PF01442_consen 134 RLEELSEELTERAEELEAKISERLEELRESLEEKAEELKETL 175 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444333333
No 218
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.07 E-value=5.7 Score=45.40 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012833 87 ERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNL 128 (455)
Q Consensus 87 ~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~L 128 (455)
.+|.++++++.+++..-..+ .+++..+.++=..|.++++.+
T Consensus 579 ~~L~~l~e~~~~l~~~ae~L-aeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKL-AERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443222221 234444444444444444444
No 219
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=93.06 E-value=3.7 Score=36.80 Aligned_cols=39 Identities=5% Similarity=0.222 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 012833 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERI 89 (455)
Q Consensus 51 r~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I 89 (455)
+.++.++..+.+.+.++++.+...+..++..+.+...-+
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555444444444433
No 220
>PF13514 AAA_27: AAA domain
Probab=93.05 E-value=10 Score=45.37 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ 83 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~ 83 (455)
.++.....++..++.++..++.++......+..+-..+.
T Consensus 736 ~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~ 774 (1111)
T PF13514_consen 736 EELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLG 774 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344445566666666666666666666666665554433
No 221
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=93.03 E-value=3.1 Score=37.55 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e 79 (455)
+.||++.+..|+.+++.+....+-+..+..++.+-+
T Consensus 14 ~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~ 49 (136)
T PF11570_consen 14 RAELDQADEDIATLQERQASAEQALNGRRSELDQAN 49 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444555555555555444444444444333333333
No 222
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.01 E-value=6.7 Score=41.21 Aligned_cols=122 Identities=15% Similarity=0.242 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 73 EVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152 (455)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkk 152 (455)
.-+.+........+..+.+....|..++..++ ..+++...+=..+|+|++.+-.+......++.+...+..++...
T Consensus 220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~----~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 220 SHLEQMKQHKKSIESALPETKSQLDKLQQDIS----KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444444444444444555555555544332 34555666667777788888777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhh
Q 012833 153 ISDLSAKLEKLQKINDEQKSKIRKTERA------LKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 153 l~EleskveeLek~~eEqekkI~elE~~------Lq~lEeeL~kaq~E~~~~ 198 (455)
+.+....+..+..+++..+.++++-... +..+...+.+++.|....
T Consensus 296 V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 296 VSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777777776665433 234555566666555543
No 223
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=93.01 E-value=8.5 Score=36.61 Aligned_cols=141 Identities=24% Similarity=0.335 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE----RIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~----~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe 122 (455)
|..|+.||..|+-+....+..+..++.+...-......-.. ...++...- ..-.-++..|+.+..-|+
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~--------~dl~~qL~aAEtRCslLE 77 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQN--------QDLSSQLSAAETRCSLLE 77 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhcc--------HHHHHHHHHHHHHHHHHH
Confidence 56678888888877777777777777666554443321111 111111111 111335566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 123 KQIDNLKKESEKQQKEKEALEARAIEAEK--------------KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (455)
Q Consensus 123 ~qIe~LkkeLE~~~~e~eeLEae~~elEk--------------kl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL 188 (455)
+|++-..+-+..-+.+....-.+...++. +++-++.+...|.....-.+.+|..++.++..-+.+-
T Consensus 78 KQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqR 157 (178)
T PF14073_consen 78 KQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQR 157 (178)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666655555533333333333 3333444444444444455556666666665555444
Q ss_pred HHHHHHH
Q 012833 189 MRAKFEA 195 (455)
Q Consensus 189 ~kaq~E~ 195 (455)
.-.+..+
T Consensus 158 KlvQdkA 164 (178)
T PF14073_consen 158 KLVQDKA 164 (178)
T ss_pred HHHHHHH
Confidence 4444433
No 224
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.93 E-value=20 Score=41.11 Aligned_cols=59 Identities=8% Similarity=0.103 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a 199 (455)
..+.+...+.-++++.-.++..++-.+++-+++-.-+.-.+.+-+.|+.|+.+=...++
T Consensus 491 ~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ 549 (861)
T PF15254_consen 491 QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQ 549 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666667777777777777777777766677777777777777765444443
No 225
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=92.78 E-value=0.36 Score=50.67 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=9.5
Q ss_pred chhHHHhhhhHHHHHHHHh
Q 012833 282 EPHVQTLKTKTIEACEATK 300 (455)
Q Consensus 282 ~p~ve~~k~k~~p~~e~~k 300 (455)
-|-+..-+.+|.++...+|
T Consensus 289 S~~~l~kRr~~~~i~~~Lr 307 (370)
T PF02994_consen 289 SPETLQKRRKFNPIKKKLR 307 (370)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555444
No 226
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=92.69 E-value=15 Score=39.66 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN-AAEQVDKAHARADELEKQIDNLK 129 (455)
Q Consensus 51 r~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~-~~eei~~Ae~~i~eLe~qIe~Lk 129 (455)
+.=+..-+.-|++++..+.. +.+.-.+.++...+..+.+.+..+...+++...+ -+.+....-.-|+.|+.|+..++
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~--D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ 299 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQK--ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAK 299 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556777777665544 6777788888888888888888888888766544 33344455556666666666666
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 130 KESEKQQK-------EKEALEARAIEAEKKISDLSAKLE------KLQKIN---DEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 130 keLE~~~~-------e~eeLEae~~elEkkl~Eleskve------eLek~~---eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
.++..+.. ++..++.+...+++++.+...++. .+.... +.+.-+.+=.++.+..+-..++.+..
T Consensus 300 aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~ 379 (434)
T PRK15178 300 AEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKL 379 (434)
T ss_pred HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665543 344777777777777777766663 344334 44444555555566666666777777
Q ss_pred HHhhhhHhh
Q 012833 194 EATSRSKEL 202 (455)
Q Consensus 194 E~~~~a~ei 202 (455)
|+++..+-+
T Consensus 380 EA~RQ~~YL 388 (434)
T PRK15178 380 QALRERQYL 388 (434)
T ss_pred HHHhhhhhe
Confidence 777665544
No 227
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=17 Score=39.16 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccccCCh
Q 012833 169 EQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPP 212 (455)
Q Consensus 169 EqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei~~~gGawl~P 212 (455)
.+...|.++-..+.+.+..|-+...+..++++++-..+|+.=.-
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rs 429 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRS 429 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666666677777777777777777777775544444333
No 228
>PRK04406 hypothetical protein; Provisional
Probab=92.51 E-value=1.1 Score=36.74 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 140 eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ 189 (455)
..++++..+||.++.-.+.-+++|++.+.++++.|+.+.++++.+-+.+.
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888888888888888888888888877776655443
No 229
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.47 E-value=3.8 Score=43.04 Aligned_cols=8 Identities=38% Similarity=0.422 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 012833 180 ALKVAEEE 187 (455)
Q Consensus 180 ~Lq~lEee 187 (455)
.+..++.+
T Consensus 336 Al~kLk~E 343 (359)
T PF10498_consen 336 ALTKLKQE 343 (359)
T ss_pred HHHHHHHH
Confidence 33333333
No 230
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=92.23 E-value=8.1 Score=44.06 Aligned_cols=72 Identities=10% Similarity=0.214 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQK-------EKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~-------e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL 188 (455)
.++.+++.|+..++.....+.. ....+..+...++.+++.++.++..+. +.+.++.+++++.+..+..+
T Consensus 311 ~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p----~~e~~~~~L~R~~~~~~~lY 386 (726)
T PRK09841 311 EQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMP----STQQEVLRLSRDVEAGRAVY 386 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554433333222 122444445555555555554444333 34555556666666555544
Q ss_pred HHH
Q 012833 189 MRA 191 (455)
Q Consensus 189 ~ka 191 (455)
..+
T Consensus 387 ~~l 389 (726)
T PRK09841 387 LQL 389 (726)
T ss_pred HHH
Confidence 443
No 231
>PRK10869 recombination and repair protein; Provisional
Probab=92.19 E-value=9.9 Score=42.09 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHhhh
Q 012833 160 LEKLQKINDEQKSKIRKT---ERALKVAEEEMMRAKFEATSRSKELT 203 (455)
Q Consensus 160 veeLek~~eEqekkI~el---E~~Lq~lEeeL~kaq~E~~~~a~ei~ 203 (455)
++++-.-.++.+.+++.+ +..++.++.++.++..+....+.+++
T Consensus 319 ~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 319 PEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444332 33455555555555555555554443
No 232
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.14 E-value=18 Score=38.24 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQ 66 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~ 66 (455)
+..++..++..+.+++.++..++.
T Consensus 94 ~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 94 LRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666665544
No 233
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=92.08 E-value=15 Score=37.17 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei~~ 204 (455)
..+.+.+..+.++.....+++.+..++.+.++.+.++..++......+.+++.+...+...+..
T Consensus 190 ~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~ 253 (269)
T PF05278_consen 190 TREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKS 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777777778888888888888888888888888888877766655533
No 234
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=92.04 E-value=13 Score=36.54 Aligned_cols=116 Identities=22% Similarity=0.286 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012833 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN 127 (455)
Q Consensus 48 ~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~ 127 (455)
..++.-|...++.+.+..+.+...-..-+.++..+++....+..++++-...=.++. +.-...+-.++..+++++..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~---E~LAr~al~~~~~le~~~~~ 103 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN---EDLAREALEEKQSLEDLAKA 103 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666666666666666666655433222222 22233444555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKI 166 (455)
Q Consensus 128 LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~ 166 (455)
++..+.........++.....++.++.++..+.+.+...
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 104 LEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555555555555555555555555555555444333
No 235
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=92.00 E-value=14 Score=39.49 Aligned_cols=144 Identities=18% Similarity=0.235 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHhhhhhhHHH------HHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE---KAIQDKSE-RIVSLQKELSSLQKKETLNAAE------QVDK 113 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e---~~I~e~e~-~I~eLq~eI~sLQkK~s~~~~e------ei~~ 113 (455)
..++.+++..+...+......+..+......+.... ......+. .|++|.++..+++..+....++ +.-.
T Consensus 238 ~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~ 317 (458)
T COG3206 238 EQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVA 317 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHh
Confidence 444455555555555555554444444443333332 11111111 2555555544444333332111 3344
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNL-KKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (455)
Q Consensus 114 Ae~~i~eLe~qIe~L-kkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ka 191 (455)
++.++.+++.++... ...+.....+...++.+.+.++++++.+++.+..+. ..+.++.+++++.+..+..++.+
T Consensus 318 ~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~----~~~~~l~~L~Re~~~~r~~ye~l 392 (458)
T COG3206 318 LEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLP----KLQVQLRELEREAEAARSLYETL 392 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhch----HhhhHHHHHHHHHHHHHHHHHHH
Confidence 444455544444322 333333344444455555555555555555544433 34444455555555544444433
No 236
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.99 E-value=0.25 Score=56.10 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
+...|.+++.+...|..++..++.++..++..+..++..+.+...+|.++...+..+
T Consensus 341 l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~ 397 (722)
T PF05557_consen 341 LARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEAL 397 (722)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555555555555555544443
No 237
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=91.96 E-value=22 Score=38.95 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 90 VSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (455)
Q Consensus 90 ~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE 133 (455)
++..+.++.++ +.+.+.+..+......+.+|...+..|...+.
T Consensus 333 Qe~~~~ld~Lq-Eksqile~sv~~l~~~lkDLd~~~~aLs~rld 375 (531)
T PF15450_consen 333 QETQSELDLLQ-EKSQILEDSVAELMRQLKDLDDHILALSWRLD 375 (531)
T ss_pred hhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34455555555 23333344444555555555555544444433
No 238
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=91.96 E-value=13 Score=36.14 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (455)
Q Consensus 151 kkl~EleskveeLek~~eEqekkI~elE~~Lq~lE 185 (455)
..+..++..++.+...+++++..+..++.++...+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 239
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=91.90 E-value=1.3 Score=42.63 Aligned_cols=96 Identities=16% Similarity=0.268 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEKTQELKGKDE-VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele~eI~~k~~-eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~q 124 (455)
|.-.|+.+|+.|+.+++..++....... .-......-.+.++.+.-.+.++.++.. +.......+....+.|...+.|
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~-~~~~~~~~l~~v~~Dl~~ie~Q 175 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE-GRSKSGKNLKSVREDLDTIEEQ 175 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCCCHHHHHHHHHHHHHH
Confidence 5666777777777777777776665211 1111223344666777777777776643 2222233455666666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012833 125 IDNLKKESEKQQKEKEAL 142 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeL 142 (455)
|+.|+.=|...+.++..|
T Consensus 176 V~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 176 VDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666665555444433
No 240
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=91.90 E-value=4.4 Score=34.44 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~ 136 (455)
....+..+-.++..+++++.-+..+.+.. +.++..+......+..++..|...+....
T Consensus 15 ~~~~~~~k~~~~~~lE~k~~rl~~Ek~ka-dqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 15 LSEQADKKVKELTILEQKKLRLEAEKAKA-DQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 33333344444444444444443333221 33344444444444444444444444333
No 241
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.88 E-value=0.91 Score=36.36 Aligned_cols=51 Identities=27% Similarity=0.400 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (455)
Q Consensus 142 LEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq 192 (455)
+++++.++|.++.-.+.-++.|+..+.+++.+|+.+++.++.+...+..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777777777777777888888888888888888877777776666654
No 242
>PRK02119 hypothetical protein; Provisional
Probab=91.88 E-value=1.1 Score=36.34 Aligned_cols=51 Identities=29% Similarity=0.270 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 140 eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
..++++..++|.++.-.+.-+++|++.+.++++.|+.+.+.+..+-+.+..
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677777888888888888888888888888888888777766555443
No 243
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=91.86 E-value=2.1 Score=41.87 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (455)
Q Consensus 149 lEkkl~EleskveeLek~~eEqekkI~elE~~ 180 (455)
++.++++..++++..+...+.++++.+.+..+
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 33333333333334444444444444333333
No 244
>PF15294 Leu_zip: Leucine zipper
Probab=91.86 E-value=6.6 Score=39.83 Aligned_cols=47 Identities=13% Similarity=0.240 Sum_probs=29.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 012833 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (455)
Q Consensus 41 ~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~ 87 (455)
.-+..+|+.++.+-..|...+..++..-...-++-..++..|.++..
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777776666555555555544444443
No 245
>PRK00106 hypothetical protein; Provisional
Probab=91.84 E-value=15 Score=40.59 Aligned_cols=12 Identities=17% Similarity=0.063 Sum_probs=5.2
Q ss_pred HHHHHHHHHhcc
Q 012833 373 QASVQEMLKKHE 384 (455)
Q Consensus 373 q~~~~~~l~~~e 384 (455)
+.++-.+||+-.
T Consensus 375 ~a~~AGLLHDIG 386 (535)
T PRK00106 375 LARRAGFLHDMG 386 (535)
T ss_pred HHHHHHHHHhcc
Confidence 344444444433
No 246
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.77 E-value=14 Score=40.64 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=7.0
Q ss_pred hhHhHHHhhcchHH
Q 012833 339 HVDNVRVALKPYTK 352 (455)
Q Consensus 339 ~~~~~~~~~~P~~~ 352 (455)
|-|-.+++.+|--+
T Consensus 578 ~~d~~~~~~~~~~~ 591 (654)
T KOG4809|consen 578 HADMWRETHKPSNE 591 (654)
T ss_pred CHHHHHHHhhhhhh
Confidence 34455555555433
No 247
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=5.3 Score=36.78 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhch
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGK 71 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k 71 (455)
++++++...++.++++++.+.++|..+
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l 32 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAAL 32 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555544443
No 248
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=91.74 E-value=14 Score=36.30 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (455)
Q Consensus 144 ae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~ 195 (455)
.+...++..+..+...+..+....+.++..+..++.+|..++.....+....
T Consensus 92 ~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 92 EEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666666666666665555444433
No 249
>PRK09343 prefoldin subunit beta; Provisional
Probab=91.71 E-value=7.8 Score=34.35 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (455)
Q Consensus 156 leskveeLek~~eEqekkI~elE~~Lq~lEeeL 188 (455)
++.+++.++..+..++++...++..+...+..+
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 250
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=91.64 E-value=2.4 Score=34.55 Aligned_cols=18 Identities=6% Similarity=0.322 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 012833 87 ERIVSLQKELSSLQKKET 104 (455)
Q Consensus 87 ~~I~eLq~eI~sLQkK~s 104 (455)
..|.+....|+.|..+|.
T Consensus 5 ~~l~EKDe~Ia~L~eEGe 22 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGE 22 (74)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 344444444444444443
No 251
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.54 E-value=18 Score=37.14 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ 189 (455)
..+..+..+..-|.-....+++++.+.+.+..+|.+...+..+.+..+..+-++..+.......+..+..+++.++.-..
T Consensus 224 Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcR 303 (309)
T PF09728_consen 224 KFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCR 303 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555566666777777777777777777777777777777777777777776777766666666665554
Q ss_pred HHH
Q 012833 190 RAK 192 (455)
Q Consensus 190 kaq 192 (455)
.++
T Consensus 304 aLQ 306 (309)
T PF09728_consen 304 ALQ 306 (309)
T ss_pred HHh
Confidence 444
No 252
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.46 E-value=14 Score=35.51 Aligned_cols=69 Identities=25% Similarity=0.359 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
...+++.++....+...++....+++.++-+++.....+....+.....|..++.....+++++..++.
T Consensus 112 ~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 112 RKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455555555555555555555555555555556666666655555555555543
No 253
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=91.42 E-value=17 Score=36.66 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhhchH
Q 012833 52 SKIRSLESHIDEKTQELKGKD 72 (455)
Q Consensus 52 ~kI~~Leski~ele~eI~~k~ 72 (455)
..+.+.+.++.....++....
T Consensus 55 ~~~~~a~a~l~~a~a~~~~~~ 75 (327)
T TIGR02971 55 AELDVARTQLDEAKARLAQVR 75 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444444555554444444333
No 254
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.33 E-value=27 Score=38.69 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (455)
Q Consensus 121 Le~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeL 163 (455)
.+.+..+|+.++...+..-..+-++..++|.+--.+++.+..|
T Consensus 147 ~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~L 189 (772)
T KOG0999|consen 147 VEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNL 189 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3445555555555555555545555555554433344444333
No 255
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=91.33 E-value=16 Score=41.48 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 121 Le~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ 189 (455)
+...+..+....+...+.+..+..++.+++..+.++...+..+....++....+..+...+...+..+.
T Consensus 225 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 225 LRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444555555555555555555555555555444444444444444433
No 256
>PRK00295 hypothetical protein; Provisional
Probab=91.32 E-value=1.7 Score=34.88 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (455)
Q Consensus 142 LEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ka 191 (455)
++++..++|.++.-.+.-+++|++.+.++++.|+.+++.+..+...+...
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777778888888888888888888888887777765555443
No 257
>PRK02793 phi X174 lysis protein; Provisional
Probab=91.32 E-value=1.5 Score=35.58 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
.+++++.++|.++.-.+.-+++|++.+.++++.|+.+.+.+..+-+.+..
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777788888888888888888888888888888888777777655544
No 258
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.21 E-value=12 Score=41.26 Aligned_cols=15 Identities=7% Similarity=0.364 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQ 124 (455)
Q Consensus 110 ei~~Ae~~i~eLe~q 124 (455)
.+..+++++..++..
T Consensus 302 ~L~ele~RL~~l~~L 316 (563)
T TIGR00634 302 RLNEIEERLAQIKRL 316 (563)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 259
>PRK00736 hypothetical protein; Provisional
Probab=91.21 E-value=1.6 Score=35.07 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 142 LEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
+++++.+||.++...+.-+++|++.+.++++.|+.+.+++..+-+.+..
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888888888888888888777777665544
No 260
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=91.06 E-value=32 Score=39.02 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI 174 (455)
....++..+++.+..|++.++...+.++.+..+-..+.+++.....+...++..+..++..+
T Consensus 584 ~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~ 645 (786)
T PF05483_consen 584 KKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEEL 645 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555544444444444444444433333333333
No 261
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=91.04 E-value=13 Score=34.65 Aligned_cols=75 Identities=13% Similarity=0.218 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 115 e~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ 189 (455)
++.|.++=.+...++-++-.+.++-..|..+..++|..+..+..-++..+........-++=+...+......+.
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e 150 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIE 150 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444444444455555555555544445555555555444444444444444444444444444444444443333
No 262
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.03 E-value=0.065 Score=60.68 Aligned_cols=8 Identities=38% Similarity=0.630 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 012833 46 ELDQLKSK 53 (455)
Q Consensus 46 eL~~lr~k 53 (455)
+|..++.+
T Consensus 69 ~l~~Le~e 76 (722)
T PF05557_consen 69 QLNQLEYE 76 (722)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 263
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.01 E-value=22 Score=42.38 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 157 SAKLEKLQKINDEQKSKIRKTERALKV 183 (455)
Q Consensus 157 eskveeLek~~eEqekkI~elE~~Lq~ 183 (455)
+..+..++...+.....+..+...+..
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ 854 (1047)
T PRK10246 828 QQELAQLAQQLRENTTRQGEIRQQLKQ 854 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 264
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.00 E-value=19 Score=36.27 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 158 AKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (455)
Q Consensus 158 skveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a 199 (455)
..-..+.+........|++++..+..++.++..+........
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~R 227 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPR 227 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 344567777777777888888888888888877777766443
No 265
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=90.90 E-value=19 Score=36.21 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 124 qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
.|..|.-++.-++..-+++.+...++-.-+.++...++.++..+--++.++.+.+.+|+.++..+.....
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666777777777777777777777777777777777777777777777777777665555443
No 266
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=90.77 E-value=2.6 Score=43.63 Aligned_cols=63 Identities=30% Similarity=0.403 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (455)
Q Consensus 114 Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~e 176 (455)
.+.++.+++.++..|+.+.+....++..++.+....+.++...+..+..|..+...-...+..
T Consensus 240 ~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~ 302 (344)
T PF12777_consen 240 KQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEE 302 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHH
Confidence 333333444444444444444444444444444444444444444444444433333333333
No 267
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.72 E-value=3 Score=40.97 Aligned_cols=70 Identities=26% Similarity=0.289 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq 182 (455)
.+++++.++.++...|-++++.++.+.++.+.++..++.+.+.++.....+..+...++.+.++++..+.
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 3444444444444444444444444444444444444444444444444444444444444444444433
No 268
>PRK04325 hypothetical protein; Provisional
Probab=90.68 E-value=1.8 Score=35.21 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
.+++++.+||.++.-.+.-+++|++.+.+++++|+.+++.++.+-+.+..
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777888888888888887777776666554443
No 269
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.53 E-value=13 Score=33.69 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q 012833 186 EEMMRAKFEAT 196 (455)
Q Consensus 186 eeL~kaq~E~~ 196 (455)
.++.+...|..
T Consensus 133 ~e~rkke~E~~ 143 (151)
T PF11559_consen 133 HELRKKEREIE 143 (151)
T ss_pred HHHHHHHHHHH
Confidence 33334333333
No 270
>PRK00846 hypothetical protein; Provisional
Probab=90.53 E-value=2.7 Score=34.68 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (455)
Q Consensus 140 eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq 192 (455)
..+++++.++|.++.-.+.-++.|++.+..++..|+.+...++.+-+.+..++
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777777777777888888888888888888888877777766655544
No 271
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=90.40 E-value=9.5 Score=32.67 Aligned_cols=10 Identities=10% Similarity=0.348 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 012833 55 RSLESHIDEK 64 (455)
Q Consensus 55 ~~Leski~el 64 (455)
+.++.++..+
T Consensus 9 q~l~~~~~~l 18 (105)
T cd00632 9 QQLQQQLQAY 18 (105)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 272
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.35 E-value=37 Score=38.55 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=35.9
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 012833 38 VDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (455)
Q Consensus 38 ~~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~ 85 (455)
..+..++.++..+.-.+.++..+.++...++.+...+|..+-..|...
T Consensus 96 k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 96 KIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455588899999988888888888888777777666666665555544
No 273
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=90.26 E-value=4.6 Score=44.09 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
....+.+++++|..++.+++.++
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~ 91 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLE 91 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555554
No 274
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.24 E-value=2.8 Score=41.16 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEe 186 (455)
..++++...++....+.++++.+.+..++++++++.+++..++..++.....|+.....+.-....++.+...++.
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 4455556666666666666555555555555555555555555555555444444444444444444444444443
No 275
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.22 E-value=2.3 Score=36.82 Aligned_cols=60 Identities=8% Similarity=0.225 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGK--DEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k--~~eIk~~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
+.+.+++.+...+...+..++.++++++.. ..++.+++..|.+.+..+..++.+|+.+.-
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345678888888888899999999888888 888888888888888888888888877753
No 276
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=90.22 E-value=4.4 Score=34.73 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~ 70 (455)
..++..++.++..+..++..++.++.+
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E 31 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNE 31 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666555544
No 277
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.08 E-value=33 Score=37.59 Aligned_cols=27 Identities=30% Similarity=0.483 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 117 RADELEKQIDNLKKESEKQQKEKEALE 143 (455)
Q Consensus 117 ~i~eLe~qIe~LkkeLE~~~~e~eeLE 143 (455)
+.+++..+++-++...+..+.+.....
T Consensus 215 ~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 215 ESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444444445555544444444444333
No 278
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.06 E-value=25 Score=36.10 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNLKKESEKQQ 136 (455)
Q Consensus 114 Ae~~i~eLe~qIe~LkkeLE~~~ 136 (455)
+++++..++++---|..++++..
T Consensus 219 ~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 219 LEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333444444333
No 279
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=32 Score=37.24 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Q 012833 163 LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (455)
Q Consensus 163 Lek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei 202 (455)
....+.+.-..+.+++.++...-.+-..++.+.+.....+
T Consensus 387 ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 387 YTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666666666666666555444
No 280
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=89.95 E-value=29 Score=39.89 Aligned_cols=130 Identities=18% Similarity=0.244 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKK 130 (455)
Q Consensus 51 r~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~Lkk 130 (455)
+.++=.-..+...-+..+.+...|+.++...-..++...+..++-+.-.++-.. .+++|....+.+.++...+++-.-
T Consensus 292 R~e~~~sr~~~~~~q~r~v~~srE~ael~~~E~~LE~D~Q~A~DhLnLV~~AlR--~QEKI~RYQ~Dl~Elt~RLEEQ~~ 369 (1480)
T COG3096 292 RRELYTSRQQLAAEQYRHVDMSRELAELNGAEGDLEADYQAASDHLNLVQTALR--QQEKIERYQADLEELTIRLEEQNE 369 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHhhHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333333334444444445555555555555545555555555555544443322 245555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 131 ESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (455)
Q Consensus 131 eLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq 182 (455)
-++..+...++-+++....|.++.++.+.+.+.+..++-++-.--+.++.++
T Consensus 370 VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ 421 (1480)
T COG3096 370 VVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIA 421 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555554444444333333333
No 281
>PRK11519 tyrosine kinase; Provisional
Probab=89.92 E-value=13 Score=42.35 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL 188 (455)
.+..+...++.++++++.++..+.. .+.++.+++++.+..+..+
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~~lp~----~e~~~~~L~Re~~~~~~lY 386 (719)
T PRK11519 343 TLLEKRKALEDEKAKLNGRVTAMPK----TQQEIVRLTRDVESGQQVY 386 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555544444333 3444455555555444443
No 282
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=89.91 E-value=19 Score=37.25 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=12.4
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 68 LKGKDEVVAQKEKAIQDKSERIVSLQK 94 (455)
Q Consensus 68 I~~k~~eIk~~e~~I~e~e~~I~eLq~ 94 (455)
+.-.++++.+.+..+.+.+..+.++++
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 283
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=89.89 E-value=55 Score=39.83 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=5.4
Q ss_pred CCCccHHHHHH
Q 012833 39 DSSPLKIELDQ 49 (455)
Q Consensus 39 ~~~~l~~eL~~ 49 (455)
+...++..+|.
T Consensus 166 Ep~~LKkkfD~ 176 (1294)
T KOG0962|consen 166 EPKNLKKKFDD 176 (1294)
T ss_pred ChHHHHHHHHH
Confidence 33445555554
No 284
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=89.85 E-value=8.6 Score=41.21 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS 91 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~e 91 (455)
+-+.+++.+..++..++.++..+.....-.+..++..+.+.+..|..
T Consensus 285 ~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~ 331 (458)
T COG3206 285 PTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAA 331 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHH
Confidence 35666777777777777777776666666666666666666555443
No 285
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.84 E-value=15 Score=41.92 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDE------------VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKA 114 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~------------eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~A 114 (455)
+.-||.+.++|+.++..+++++.+++. |+-.+...=--++.++.+....++.||.+...+. +-++..
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneell-k~~e~q 467 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELL-KVIENQ 467 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH-HHHHHH
Confidence 344777777777777777777776433 2222222222333344444444444443332220 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 115 HARADELEKQIDNLKKESEK----QQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 115 e~~i~eLe~qIe~LkkeLE~----~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
.++...+.+.+.+-..++-. ..-+...+.-+.+++-.+++.+.-+++.-+++..-+...+++-+.++..+.+-..-
T Consensus 468 ~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~ 547 (861)
T PF15254_consen 468 KEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRT 547 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHH
Confidence 11111111111111111111 11222244444445555555555555555555555555555555555555554444
Q ss_pred HHHHHhhh
Q 012833 191 AKFEATSR 198 (455)
Q Consensus 191 aq~E~~~~ 198 (455)
++.-...+
T Consensus 548 LQ~Sma~l 555 (861)
T PF15254_consen 548 LQNSMAKL 555 (861)
T ss_pred HHHHHHHH
Confidence 44444433
No 286
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=89.50 E-value=11 Score=31.24 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012833 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS 197 (455)
Q Consensus 121 Le~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~ 197 (455)
++.-++.++.+.+.+..+.........+.+.++..--++++.+...+-+++..-..++. .+|++|.++..++..
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~---~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ---QYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 34455666666666666666666666666666666666666666666555555555443 457788888777653
No 287
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=89.41 E-value=17 Score=36.94 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKT 65 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele 65 (455)
..++++.+..+..++.++..+.
T Consensus 80 ~~~l~~~~a~l~~~~~~l~~~~ 101 (331)
T PRK03598 80 ENALMQAKANVSVAQAQLDLML 101 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444443
No 288
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=89.16 E-value=2.9 Score=46.05 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+.+++..++.-..++.++|.+.+++...+++++.+++++++.+...+.++..++..+++++..+..+.+..+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 334444555555666666666666666666667777777666666666666666666666666655554433
No 289
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.03 E-value=17 Score=37.78 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=20.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 69 ~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
.++-..|-+.+..+++.-..+++-+.+-+.|+.
T Consensus 74 q~kirk~~e~~eglr~i~es~~e~q~e~~qL~~ 106 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIRESVEERQQESEQLQS 106 (401)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666777776677776666666653
No 290
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=88.99 E-value=15 Score=32.05 Aligned_cols=33 Identities=21% Similarity=0.523 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 012833 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERI 89 (455)
Q Consensus 57 Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I 89 (455)
++..+.....++......+...+..+...+..|
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l 44 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQEL 44 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444433
No 291
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=88.87 E-value=22 Score=33.92 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH--HHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ--KEKAIQDKS 86 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~--~e~~I~e~e 86 (455)
+.+.+.-.+...++..-.+....+..|-...++|=. .+..|++.+
T Consensus 30 ~tR~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~ly~~~F~ELIRQVT 76 (189)
T PF10211_consen 30 ATRQDVIQLQEWLDKMLQQRQARETGICPVREELYSQCFDELIRQVT 76 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665555555555555444444433 244444443
No 292
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.80 E-value=10 Score=36.35 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
.++.+.++..|.+.+.....++++|..|+
T Consensus 109 ~e~~k~le~~~~~~~~~~~~~e~~i~~Le 137 (190)
T PF05266_consen 109 LEERKKLEKKIEEKEAELKELESEIKELE 137 (190)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33444455555555444444444444443
No 293
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=88.75 E-value=19 Score=34.15 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEK 64 (455)
Q Consensus 46 eL~~lr~kI~~Leski~el 64 (455)
++..++-+|..|+.++.++
T Consensus 80 el~~ld~~i~~l~ek~q~l 98 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSL 98 (201)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 3333444444443333333
No 294
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.70 E-value=5.7 Score=32.02 Aligned_cols=23 Identities=26% Similarity=0.357 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKE 138 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e 138 (455)
.+++.+-.++.+|+.+++.+..+
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 295
>PRK11519 tyrosine kinase; Provisional
Probab=88.69 E-value=30 Score=39.48 Aligned_cols=6 Identities=17% Similarity=0.252 Sum_probs=2.7
Q ss_pred CcchHH
Q 012833 233 GKPAMD 238 (455)
Q Consensus 233 g~P~~~ 238 (455)
|-|++-
T Consensus 463 g~pvlg 468 (719)
T PRK11519 463 GISVYA 468 (719)
T ss_pred CCCeEE
Confidence 444443
No 296
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=88.56 E-value=36 Score=35.97 Aligned_cols=26 Identities=8% Similarity=0.261 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHH
Q 012833 48 DQLKSKIRSLESHIDEKTQELKGKDE 73 (455)
Q Consensus 48 ~~lr~kI~~Leski~ele~eI~~k~~ 73 (455)
..+...+..++..+..+..+++....
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777766544
No 297
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.52 E-value=17 Score=34.78 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESE 133 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE 133 (455)
..-+++.+|..++..|+++++
T Consensus 107 ~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 107 ELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 298
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=88.52 E-value=13 Score=32.20 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 012833 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (455)
Q Consensus 56 ~Leski~ele~eI~~k~~eIk~~e~~I~e~ 85 (455)
.+-.+...+.+++......+..++..+++.
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~ 36 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEA 36 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444333333333333333
No 299
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=88.44 E-value=38 Score=36.11 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccccCCh
Q 012833 166 INDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPP 212 (455)
Q Consensus 166 ~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei~~~gGawl~P 212 (455)
++...+.--+.++.-+..+.+++.++..+-...+..=...+|.|||.
T Consensus 354 Ev~RRr~~~~k~~~i~~~~~eeL~~l~eeE~~~Re~F~~e~GdyLP~ 400 (412)
T PF04108_consen 354 EVERRRAVRDKMKKIIREANEELDKLREEEQRRREAFLKEYGDYLPE 400 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCh
Confidence 33333344455666666677777777776665555556668999997
No 300
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=88.32 E-value=13 Score=41.54 Aligned_cols=47 Identities=15% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 012833 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (455)
Q Consensus 39 ~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~ 85 (455)
+..+++-+.+-|-..+..--.+|.+++.=|+++...+...|..+++.
T Consensus 119 dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqe 165 (861)
T KOG1899|consen 119 DKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQE 165 (861)
T ss_pred chhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 33344444444444444444444444444444444444444444443
No 301
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=88.32 E-value=25 Score=33.76 Aligned_cols=7 Identities=29% Similarity=0.601 Sum_probs=2.6
Q ss_pred HHhhhhH
Q 012833 194 EATSRSK 200 (455)
Q Consensus 194 E~~~~a~ 200 (455)
++...++
T Consensus 181 ~A~~~Ar 187 (201)
T PF12072_consen 181 EADKKAR 187 (201)
T ss_pred HHHHHHH
Confidence 3333333
No 302
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.30 E-value=42 Score=36.45 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012833 84 DKSERIVSLQKELSSLQK 101 (455)
Q Consensus 84 e~e~~I~eLq~eI~sLQk 101 (455)
+.++.++.|+.-++..|+
T Consensus 387 d~~k~lqnLqe~la~tqk 404 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQK 404 (527)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 303
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=88.29 E-value=41 Score=38.30 Aligned_cols=122 Identities=18% Similarity=0.157 Sum_probs=64.0
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKE 138 (455)
Q Consensus 59 ski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e 138 (455)
++....++++.+...++......+.+....+...+.+-..+..... ........+..+...-+..++.+..+...
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-----~~~~~~~~~~~l~~~~~~~~~~i~~l~~~ 249 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG-----NYADLRRNIKPLEGLESTIKKKIQALQQE 249 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hhhhHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443332211 23344455555555555555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (455)
Q Consensus 139 ~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lE 185 (455)
+..++.+...++..+..+...+++.-.....+...+...+..+....
T Consensus 250 l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 250 LEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666665555555555554444
No 304
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=88.27 E-value=25 Score=33.76 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (455)
Q Consensus 114 Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq 192 (455)
.+..+.-...-....+..++.+..-+......+...+.-.......+.+-...++.-+.+++.|.+.+.....++.+.+
T Consensus 93 aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 93 AQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555555544444444444444444444444444444444444444444444444444444443
No 305
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=88.15 E-value=11 Score=37.52 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKS 172 (455)
Q Consensus 139 ~eeLEae~~elEkkl~EleskveeLek~~eEqek 172 (455)
..+||.++......+..+..+++.|+.++..+-.
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444333
No 306
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.15 E-value=31 Score=39.35 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 108 AEQVDKAHARADELEKQIDNLKKESEKQQK 137 (455)
Q Consensus 108 ~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~ 137 (455)
.+.....++++..++.+++++..++...+.
T Consensus 155 ee~~~~~eer~~kl~~~~qe~naeL~rarq 184 (916)
T KOG0249|consen 155 EEHSGNIEERTRKLEEQLEELNAELQRARQ 184 (916)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666555555443
No 307
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=88.08 E-value=30 Score=36.55 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 114 Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
...+|..++..|..|++.+.....-+.
T Consensus 270 ~~~ei~~~e~~i~~L~~ai~~k~~~lk 296 (384)
T PF03148_consen 270 TLQEIAEMEKNIEDLEKAIRDKEGPLK 296 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334555555555555555555554444
No 308
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=88.05 E-value=9 Score=32.69 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 75 VAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
|-+++..-.+....+.+++.+-..+.
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~s 56 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELS 56 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344444444444444444443333
No 309
>PF14282 FlxA: FlxA-like protein
Probab=88.02 E-value=4 Score=35.35 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQ 66 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~ 66 (455)
....|..|+..|..|..+|.++..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 366667777777777777666655
No 310
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=87.59 E-value=49 Score=36.43 Aligned_cols=55 Identities=11% Similarity=0.226 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (455)
Q Consensus 130 keLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~l 184 (455)
.+++.+-.++...+++..-...++..+..+++..++..+....++.+..+.+..+
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~L 474 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRL 474 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433333333333333333333333
No 311
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=87.53 E-value=21 Score=32.56 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qI 125 (455)
+++.++..++..+..+......+..++..|..+....+.++..-..|...++ .+...+..-+.+|
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~---------------~~~~~l~~re~~i 84 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLA---------------QARALLAQREQRI 84 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH
Confidence 4445555555555555555555555444444444444444443333333332 2333444555666
Q ss_pred HHHHHHHHHHH
Q 012833 126 DNLKKESEKQQ 136 (455)
Q Consensus 126 e~LkkeLE~~~ 136 (455)
.+|+.|.+.++
T Consensus 85 ~rL~~ENe~lR 95 (135)
T TIGR03495 85 ERLKRENEDLR 95 (135)
T ss_pred HHHHHcCHHHH
Confidence 66666665553
No 312
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=87.47 E-value=18 Score=39.67 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I 82 (455)
.++++++.+.+.++.++..++.+|.+...++.+.+...
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~ 311 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL 311 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555554444433
No 313
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.45 E-value=29 Score=35.34 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
...+++-++.+.+.+.+|.+|.++|..++
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455566677777777777777776665
No 314
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=87.32 E-value=11 Score=30.22 Aligned_cols=58 Identities=16% Similarity=0.350 Sum_probs=34.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (455)
Q Consensus 69 ~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE 133 (455)
+++...|..++..|.+.+..|..|+-++.++ ..........++...+.++..+++++.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~-------p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSL-------PPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555566666666666666666666665544 234445666666666666666666554
No 315
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=87.28 E-value=37 Score=35.72 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELK 69 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~ 69 (455)
.+...++.+++.|+.++..+.+.++
T Consensus 53 ~q~~~~~~~~~~L~~ql~~~~~~~~ 77 (372)
T PF04375_consen 53 QQLQQLQQQLQALQQQLQQLQQQLE 77 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555554444
No 316
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=87.20 E-value=5 Score=44.30 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 130 keLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
+.++++..-++...-++.++|.+.+++++++++++.+++++++.|..-+.++..++.+++.++....++
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 335555556666666777777777777777777777777777777777777777777776666655544
No 317
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.15 E-value=51 Score=36.73 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHhhh
Q 012833 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR---KTERALKVAEEEMMRAKFEATSRSKELT 203 (455)
Q Consensus 139 ~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~---elE~~Lq~lEeeL~kaq~E~~~~a~ei~ 203 (455)
+++.+.|+..+..-...+...++++-.-.++.+.+++ ..+..++.++.++.+++.+....+.+++
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls 366 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALS 366 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333334444333333333333 3334455555666666666655555554
No 318
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=87.13 E-value=55 Score=37.29 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA----------EKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~el----------Ekkl~EleskveeLek~~eEqekkI~elE~ 179 (455)
++..+..+.+.|++++..-+.+++.+......|.....+. +.+..++...+..|+++.+.+....+=+.-
T Consensus 191 ~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqV 270 (739)
T PF07111_consen 191 ELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQV 270 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666777777777777777666666666555333 244456666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012833 180 ALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 180 ~Lq~lEeeL~kaq~E~~ 196 (455)
+++.+...+.--+.++.
T Consensus 271 RvqSLt~IL~LQEeEL~ 287 (739)
T PF07111_consen 271 RVQSLTDILTLQEEELC 287 (739)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666555444444443
No 319
>PRK04406 hypothetical protein; Provisional
Probab=87.10 E-value=5.6 Score=32.57 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 148 elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
.++.++.+++.++.-++..++++...+-++...|..++.++..+..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555444444444433
No 320
>PRK15396 murein lipoprotein; Provisional
Probab=86.99 E-value=7.9 Score=32.03 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 012833 46 ELDQLKSKIRSLESHIDEKTQELKG 70 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele~eI~~ 70 (455)
++++|..+++.|.++++.+.++++.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~ 50 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNA 50 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544444433
No 321
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=86.90 E-value=32 Score=33.53 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Eleskv 160 (455)
.+..++.-..++-..-++++..++.....-+.|.....+....+...+.+.
T Consensus 84 dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry 134 (207)
T PF05010_consen 84 DLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRY 134 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555544444444444444444444333
No 322
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=86.75 E-value=78 Score=37.87 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq 93 (455)
..++..+...+..+......+..++......+......+.+....+..+.
T Consensus 529 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1047)
T PRK10246 529 QSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQALT 578 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666555555555444444444444444444444444333
No 323
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=86.64 E-value=20 Score=32.26 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDE 63 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~e 63 (455)
..++++|.++++.|..+=+.
T Consensus 26 ~~~l~~LEae~q~L~~kE~~ 45 (126)
T PF09403_consen 26 ESELNQLEAEYQQLEQKEEA 45 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444333
No 324
>PF14282 FlxA: FlxA-like protein
Probab=86.64 E-value=6.1 Score=34.25 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 108 AEQVDKAHARADELEKQIDNLKKESEKQ 135 (455)
Q Consensus 108 ~eei~~Ae~~i~eLe~qIe~LkkeLE~~ 135 (455)
..++..+..+|..|+.+|..++.+....
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444433
No 325
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=86.60 E-value=38 Score=34.13 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 012833 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQ 77 (455)
Q Consensus 48 ~~lr~kI~~Leski~ele~eI~~k~~eIk~ 77 (455)
..++..+.+.+.++..++.++......+.+
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~ 105 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQ 105 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666655555444443333
No 326
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=86.55 E-value=33 Score=36.73 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
....+.+++-++++-+++.+.+..+..-...+-+.+...+.++|.+|+.|+.+...+.
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777776666666666666666666666666666665553
No 327
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=86.50 E-value=14 Score=30.57 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (455)
Q Consensus 124 qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI 174 (455)
.|.-|+-+++.++.+...+..+...+.....++..+.+.+..+....+.++
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333
No 328
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=86.48 E-value=12 Score=40.88 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104 (455)
Q Consensus 70 ~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s 104 (455)
..+..+.+++++|.+.+.++..++++++.++..+.
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 102 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAK 102 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998876543
No 329
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=86.37 E-value=18 Score=30.14 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~sL 99 (455)
....+..+...+.++...+...
T Consensus 17 ~~~~l~~L~~~~~~~~~~~~~~ 38 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQLSES 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444444444444333
No 330
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=86.31 E-value=36 Score=34.90 Aligned_cols=26 Identities=0% Similarity=0.069 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHH
Q 012833 49 QLKSKIRSLESHIDEKTQELKGKDEV 74 (455)
Q Consensus 49 ~lr~kI~~Leski~ele~eI~~k~~e 74 (455)
..+..+.+++.++...+.+++.....
T Consensus 83 ~~~~~l~~a~a~l~~a~a~l~~~~~~ 108 (346)
T PRK10476 83 PYELTVAQAQADLALADAQIMTTQRS 108 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777766666554433
No 331
>PRK10869 recombination and repair protein; Provisional
Probab=86.27 E-value=44 Score=37.09 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQI 125 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qI 125 (455)
+++..++|+..++.-.
T Consensus 297 ~l~~ie~Rl~~l~~L~ 312 (553)
T PRK10869 297 RLAELEQRLSKQISLA 312 (553)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 332
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=86.17 E-value=12 Score=32.49 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 75 VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (455)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE 133 (455)
-.++...+..++..|..+++++++|.. +...|.++|+.|+.+++
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~F---------------rN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTF---------------RNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Confidence 334555555556666666666666654 33344555666665555
No 333
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=85.92 E-value=9.6 Score=39.63 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
.|.+++..+..+|++.-....+.+++...-.+..-+.|..-.+.+.++...+..+++
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~ 60 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKK 60 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456667777777777766666666666666666666666666666666666666644
No 334
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=85.83 E-value=63 Score=35.92 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=11.7
Q ss_pred chhHHHhhhhHHHHHHHHhhhc
Q 012833 282 EPHVQTLKTKTIEACEATKTAV 303 (455)
Q Consensus 282 ~p~ve~~k~k~~p~~e~~k~~~ 303 (455)
.|.+..+=.++..+.+-+..++
T Consensus 275 ~~~~~~V~~~l~~vf~fL~~~L 296 (593)
T PF06248_consen 275 RPSPKEVFSNLLLVFEFLHQHL 296 (593)
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555
No 335
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=85.81 E-value=12 Score=34.72 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~q 124 (455)
..|+++.......+.++-...-.+......+......++.++..|..+....+.+..+..-...+-.....-.+.++.+|
T Consensus 44 e~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eq 123 (157)
T COG3352 44 EVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQ 123 (157)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHH
Confidence 45555555555555554433333444444444444444444444444444444444333333222222222245555566
Q ss_pred HHHHHHHHHHHHHHH
Q 012833 125 IDNLKKESEKQQKEK 139 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~ 139 (455)
|.+++..++...+++
T Consensus 124 V~el~~i~emv~~d~ 138 (157)
T COG3352 124 VNELKMIVEMVIKDL 138 (157)
T ss_pred HHHHHHHHHHHhccc
Confidence 665555555444433
No 336
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.75 E-value=64 Score=35.90 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 012833 121 LEKQIDNLKKESEK 134 (455)
Q Consensus 121 Le~qIe~LkkeLE~ 134 (455)
++.+++.|..-+|.
T Consensus 667 ~~~~~~~L~~~iET 680 (741)
T KOG4460|consen 667 IPDQLRHLGNAIET 680 (741)
T ss_pred hHHHHHHHHHHHHH
Confidence 33333333333333
No 337
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=85.67 E-value=38 Score=37.31 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 151 KKISDLSAKLEKLQKINDEQKSKIRKT 177 (455)
Q Consensus 151 kkl~EleskveeLek~~eEqekkI~el 177 (455)
.+++.+...+..|++++..+...|+.+
T Consensus 487 ~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 487 EQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 338
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=85.67 E-value=62 Score=35.66 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 012833 88 RIVSLQKELSSL 99 (455)
Q Consensus 88 ~I~eLq~eI~sL 99 (455)
.|.+|++.|..+
T Consensus 359 ~lkDLd~~~~aL 370 (531)
T PF15450_consen 359 QLKDLDDHILAL 370 (531)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 339
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=85.67 E-value=20 Score=32.45 Aligned_cols=49 Identities=2% Similarity=0.206 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS 91 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~e 91 (455)
+...++..+++|++....|..+++.+..-..-+.+....+.+.++.+.+
T Consensus 6 a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 6 AERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455667777888777777777777776666666666666666666555
No 340
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=85.64 E-value=7.1 Score=34.24 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQ 136 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~ 136 (455)
.++.++..++++++.+.+.+..+.
T Consensus 90 ~l~~~~~~l~~~~~~l~~~l~~l~ 113 (126)
T TIGR00293 90 FLKKRIEELEKAIEKLQEALAELA 113 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443333333333
No 341
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.46 E-value=6.9 Score=31.86 Aligned_cols=52 Identities=29% Similarity=0.354 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq 192 (455)
.+++|+.++|.++..-+.-+++|+..+.+++..++.+...+..+-+.+...+
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677777777888777888888888888888888877777776666555544
No 342
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=85.45 E-value=27 Score=31.42 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=5.1
Q ss_pred HHHHHHhhhchHH
Q 012833 61 IDEKTQELKGKDE 73 (455)
Q Consensus 61 i~ele~eI~~k~~ 73 (455)
.+.+.++++...+
T Consensus 45 ~~~v~kql~~vs~ 57 (126)
T PF07889_consen 45 VASVSKQLEQVSE 57 (126)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444333
No 343
>PRK11546 zraP zinc resistance protein; Provisional
Probab=85.40 E-value=14 Score=33.91 Aligned_cols=34 Identities=9% Similarity=-0.044 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~ 78 (455)
++.+.++.-.++...+...+.++|-.+..|++.+
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555666666665555555555554
No 344
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=85.25 E-value=7.2 Score=34.20 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALE 143 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLE 143 (455)
+-+..++..++.+.+.++.+..++..+.
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~ 113 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELA 113 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333
No 345
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.22 E-value=59 Score=35.04 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek 165 (455)
.+..++....+++..+.+|+...+++..+.......+..+..++...+.....+.+
T Consensus 305 r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d 360 (502)
T KOG0982|consen 305 RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMND 360 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666555555555555554444444444444433333333
No 346
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=85.19 E-value=15 Score=29.58 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSK 173 (455)
Q Consensus 142 LEae~~elEkkl~EleskveeLek~~eEqekk 173 (455)
+..+...+..++...-....+|..+++.++++
T Consensus 31 L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 31 LRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444433333
No 347
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=85.04 E-value=67 Score=35.55 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=11.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHH
Q 012833 41 SPLKIELDQLKSKIRSLESHIDE 63 (455)
Q Consensus 41 ~~l~~eL~~lr~kI~~Leski~e 63 (455)
..+..+++.++.++......+..
T Consensus 251 ~~id~~~~~L~~~l~~~~~~l~~ 273 (570)
T COG4477 251 VNIDSRLERLKEQLVENSELLTQ 273 (570)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHH
Confidence 44455555555555544444443
No 348
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=85.02 E-value=13 Score=30.74 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEK 80 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~ 80 (455)
+.|.++.++..+..+.....++...|+....++.++..
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888777777777666655555443
No 349
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=84.64 E-value=35 Score=31.92 Aligned_cols=98 Identities=11% Similarity=0.189 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~Lk 129 (455)
.......|+..+.+....+...+.+..+....++.....+......|+.+-..+++..-..+.....=.+.+..++..++
T Consensus 13 r~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e 92 (158)
T PF09486_consen 13 RRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAE 92 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777777777778888888888888888888888776676655555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012833 130 KESEKQQKEKEALEARAI 147 (455)
Q Consensus 130 keLE~~~~e~eeLEae~~ 147 (455)
.++......+....++..
T Consensus 93 ~~~a~l~~~l~~~~~~ia 110 (158)
T PF09486_consen 93 AELAALRQALRAAEDEIA 110 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 554444444443333333
No 350
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=84.62 E-value=75 Score=36.58 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 012833 44 KIELDQLK 51 (455)
Q Consensus 44 ~~eL~~lr 51 (455)
+..|+.|+
T Consensus 485 k~kL~~Lr 492 (762)
T PLN03229 485 QERLENLR 492 (762)
T ss_pred HHHHHHHH
Confidence 33333333
No 351
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=84.57 E-value=46 Score=33.55 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQ 135 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~ 135 (455)
.++..++.++..++++++..
T Consensus 142 ~~i~~l~~~~~~~~~~~~~~ 161 (301)
T PF14362_consen 142 AEIAALQAEIDQLEKEIDRA 161 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 352
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.54 E-value=8.3 Score=40.07 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eE 169 (455)
..+++++.+..+++.|+..-|.++....+++...+.+|.+...++..++-|....++
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445566666677777777777777777777777777777777777777777666665
No 353
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=84.43 E-value=12 Score=38.96 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 356 RAYGKFLKSATTYHHQVQASVQEMLKK 382 (455)
Q Consensus 356 ~~~~~~~~~a~~~h~q~q~~~~~~l~~ 382 (455)
..|..++.-...|++.=.=.-...|.+
T Consensus 217 ~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~ 243 (330)
T PF07851_consen 217 SLYQSVVQFLQYRYQRGCLYRLRALGK 243 (330)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 456666666666666554444555544
No 354
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.35 E-value=53 Score=37.59 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNL 128 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~L 128 (455)
+.+...++.+++.++.++
T Consensus 165 ~~kl~~~~qe~naeL~ra 182 (916)
T KOG0249|consen 165 TRKLEEQLEELNAELQRA 182 (916)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 355
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=84.33 E-value=33 Score=31.47 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 147 IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (455)
Q Consensus 147 ~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~l 184 (455)
..+|..+....+.+..|+..+..+..+|..|+..+...
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~ 130 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQ 130 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555554443
No 356
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=84.30 E-value=27 Score=33.09 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
....+.+.++.|..++...+........++.
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~ 134 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELN 134 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544444443333
No 357
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.28 E-value=21 Score=29.04 Aligned_cols=20 Identities=40% Similarity=0.335 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~ 97 (455)
++..|...=..|..|+-+++
T Consensus 9 LE~ki~~aveti~~Lq~e~e 28 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENE 28 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 358
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=84.09 E-value=55 Score=33.74 Aligned_cols=10 Identities=50% Similarity=0.674 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 012833 45 IELDQLKSKI 54 (455)
Q Consensus 45 ~eL~~lr~kI 54 (455)
..|+.++.++
T Consensus 55 ~~ld~~~~kl 64 (301)
T PF06120_consen 55 DSLDELKEKL 64 (301)
T ss_pred HhhHHHHHHH
Confidence 3444444444
No 359
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=84.01 E-value=13 Score=30.37 Aligned_cols=28 Identities=43% Similarity=0.372 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKESEKQQKEKEALEARAI 147 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~eeLEae~~ 147 (455)
+.+.+|++|+++.-.++-.+.-++.++.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455566666665555555555555544
No 360
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=83.76 E-value=6.9 Score=31.27 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 150 EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 150 Ekkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+.++.+++.++.-++..++++...+.++...|..++..+..+.....
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555544444444444444444444444444444444333
No 361
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=83.73 E-value=20 Score=31.06 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=7.1
Q ss_pred HHHhhhchHHHHHHHHHHH
Q 012833 64 KTQELKGKDEVVAQKEKAI 82 (455)
Q Consensus 64 le~eI~~k~~eIk~~e~~I 82 (455)
+.++|+.....+..+...+
T Consensus 11 l~~~i~~l~~~~~~l~~~~ 29 (129)
T cd00890 11 LQQQLEALQQQLQKLEAQL 29 (129)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 362
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=83.71 E-value=24 Score=29.40 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 012833 117 RADELEKQIDNLKKES 132 (455)
Q Consensus 117 ~i~eLe~qIe~LkkeL 132 (455)
++..++.++..++.++
T Consensus 13 ~l~~~~~q~~~l~~~~ 28 (106)
T PF01920_consen 13 QLQQLEQQIQQLERQL 28 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444443333
No 363
>PRK02119 hypothetical protein; Provisional
Probab=83.62 E-value=9.2 Score=31.09 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 147 IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (455)
Q Consensus 147 ~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~ 195 (455)
..++.++.+++.++.-++..++++...+-++.+.|..++.++..+..+.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666665555555555554443
No 364
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.54 E-value=2.8 Score=48.72 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
+..+|..+.....++..+..+.....++....+...+...........+...-+.++.+
T Consensus 433 ~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~ 491 (847)
T KOG0998|consen 433 LANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDN 491 (847)
T ss_pred chhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccc
Confidence 34555666666666666655555555555555555555555444444444444444433
No 365
>PF15456 Uds1: Up-regulated During Septation
Probab=83.08 E-value=27 Score=31.33 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 012833 177 TERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 177 lE~~Lq~lEeeL~kaq~E~~ 196 (455)
.+++++....++.+++....
T Consensus 86 ~~rk~ee~~~eL~~le~R~~ 105 (124)
T PF15456_consen 86 SDRKCEELAQELWKLENRLA 105 (124)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 366
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=82.96 E-value=16 Score=29.95 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 117 RADELEKQIDNLKKESEKQQ 136 (455)
Q Consensus 117 ~i~eLe~qIe~LkkeLE~~~ 136 (455)
+..+|..++..|++++...+
T Consensus 44 eNieLKve~~~L~~el~~~~ 63 (75)
T PF07989_consen 44 ENIELKVEVESLKRELQEKK 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333
No 367
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=82.85 E-value=28 Score=29.37 Aligned_cols=45 Identities=31% Similarity=0.455 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (455)
Q Consensus 119 ~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeL 163 (455)
.+++.+++.+..+...+..++...+++.+.++.-..++...+...
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555554433
No 368
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=82.77 E-value=52 Score=32.52 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 012833 125 IDNLKKESEKQQ 136 (455)
Q Consensus 125 Ie~LkkeLE~~~ 136 (455)
++.|++++++.+
T Consensus 99 ~~~Lq~~Lk~V~ 110 (230)
T PF03904_consen 99 QDILQDELKDVD 110 (230)
T ss_pred HHHHHHHHHhhc
Confidence 344444444443
No 369
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=82.76 E-value=26 Score=28.98 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sL 99 (455)
+-+++++.-+..++.+++.+..++++.-.+.+++-..++.+.+.+..+-+.+..+
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~ 80 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADL 80 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455555555555555555555555555544444444444444444444444433
No 370
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=82.74 E-value=11 Score=41.61 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a 199 (455)
-+-.+++.|-.+...+-.-+.+|+--+++|=.++.+++.+.+-|+.+++..+..-.++++++..+|++|.+++.++....
T Consensus 298 GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar 377 (832)
T KOG2077|consen 298 GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDAR 377 (832)
T ss_pred cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777766666666677788888888889999999999999999999999999999999999999999999888664
Q ss_pred Hh
Q 012833 200 KE 201 (455)
Q Consensus 200 ~e 201 (455)
.+
T Consensus 378 ~~ 379 (832)
T KOG2077|consen 378 QK 379 (832)
T ss_pred Hh
Confidence 43
No 371
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=82.63 E-value=18 Score=37.24 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012833 167 NDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (455)
Q Consensus 167 ~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ 200 (455)
+-.++.++.++.++...++.++.+++--+++.+-
T Consensus 61 vrdYqrq~~elneEkrtLeRELARaKV~aNRVA~ 94 (351)
T PF07058_consen 61 VRDYQRQVQELNEEKRTLERELARAKVSANRVAT 94 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 3478888999999999999999999988887654
No 372
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=82.53 E-value=31 Score=29.81 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I 82 (455)
+...+.+++.+++.+.+.+......+.+.+..+
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~ 36 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAK 36 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 373
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=82.51 E-value=33 Score=31.87 Aligned_cols=61 Identities=23% Similarity=0.323 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (455)
Q Consensus 108 ~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~e 168 (455)
.+.++...++..+.++++-+.+..++-..+.+.....+++.++..++.+...++.+.....
T Consensus 43 ne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~N 103 (157)
T COG3352 43 NEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFN 103 (157)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567777777777777777665555555555555555555555555555555555544444
No 374
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=82.51 E-value=59 Score=34.99 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 012833 410 ASALLVLPVIILFRIGSAIFC 430 (455)
Q Consensus 410 asal~~~p~~~~~~~~~~~~~ 430 (455)
|.+++..-+=...-.+|+.|.
T Consensus 425 ALkFmLTnlK~~~A~vss~~~ 445 (447)
T KOG2751|consen 425 ALKFMLTNLKWLLAWVSSLFS 445 (447)
T ss_pred HHHHHHhccHHHHHHHhhhhc
Confidence 666555555444445555553
No 375
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=82.36 E-value=20 Score=31.63 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
...+...++.+|+--.. ..++..|.-|+.-|..++.
T Consensus 22 C~~K~~~Ie~qI~~Ak~----------------~gN~~rv~GLe~AL~~v~~ 57 (115)
T PF06476_consen 22 CEAKEQAIEKQIEYAKA----------------HGNQHRVAGLEKALEEVKA 57 (115)
T ss_pred HHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHHh
Confidence 46666666655554322 2334566666666655543
No 376
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=82.28 E-value=35 Score=39.55 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcccCcccccc
Q 012833 371 QVQASVQEMLKKHELTSPLATK 392 (455)
Q Consensus 371 q~q~~~~~~l~~~e~~~~~a~~ 392 (455)
.+...|.++|.+|+..+.|-.-
T Consensus 746 ~Lr~~v~~~L~~~~~V~~f~~a 767 (782)
T PRK00409 746 KLRKGVQEFLKKHPSVKSFRDA 767 (782)
T ss_pred HHHHHHHHHHcCCCceeeeeec
Confidence 6888999999999998887443
No 377
>PRK00295 hypothetical protein; Provisional
Probab=82.15 E-value=11 Score=30.08 Aligned_cols=48 Identities=8% Similarity=0.130 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 149 lEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
++.++.+++.++.-++..++++...+-++.+.|..++.++..+..+..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666555555555555544433
No 378
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=82.13 E-value=45 Score=31.28 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 78 KEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 78 ~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
.++..-.....++++..++..+.
T Consensus 49 ~e~~~~~~~a~~~eLr~el~~~~ 71 (177)
T PF07798_consen 49 LENQEYLFKAAIAELRSELQNSR 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666665543
No 379
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=81.92 E-value=74 Score=33.64 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=72.9
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh----h--------
Q 012833 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE--RIVSLQKELSSLQKKE----T-------- 104 (455)
Q Consensus 39 ~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~--~I~eLq~eI~sLQkK~----s-------- 104 (455)
....|..|++-+..=-.-|+..+.+...+|.....-...++..+.++.. .|....-.+..-...+ .
T Consensus 117 ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~ 196 (384)
T PF03148_consen 117 VEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNS 196 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccC
Confidence 3344566666665555556666666666666655555556655555544 2222222221111000 0
Q ss_pred hh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 105 LN-------AAEQVDKAHARADELEKQIDNLKKESEKQQKEKE--------ALEARAIEAEKKISDLSAKLEKLQKINDE 169 (455)
Q Consensus 105 ~~-------~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e--------eLEae~~elEkkl~EleskveeLek~~eE 169 (455)
+. ....+..++........--..+...+.....++. .+..+..+.+.-.++++..+.....++.+
T Consensus 197 ~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~ 276 (384)
T PF03148_consen 197 STPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAE 276 (384)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 00 1113334444333332222222222222222222 44455555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 170 QKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 170 qekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
.+..|..++..+..-+.-+.-++..+.
T Consensus 277 ~e~~i~~L~~ai~~k~~~lkvaqTRL~ 303 (384)
T PF03148_consen 277 MEKNIEDLEKAIRDKEGPLKVAQTRLE 303 (384)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 555555555555555555555555444
No 380
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=81.92 E-value=11 Score=35.65 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNLKKESEKQQ 136 (455)
Q Consensus 114 Ae~~i~eLe~qIe~LkkeLE~~~ 136 (455)
..+.|.+|.+++....+.|..++
T Consensus 121 mQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 121 MQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 381
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.74 E-value=49 Score=34.09 Aligned_cols=9 Identities=44% Similarity=0.530 Sum_probs=4.5
Q ss_pred hhccccCCh
Q 012833 204 EVHSAWLPP 212 (455)
Q Consensus 204 ~~gGawl~P 212 (455)
+.||--|.|
T Consensus 171 ~khGlVlv~ 179 (302)
T PF09738_consen 171 EKHGLVLVP 179 (302)
T ss_pred HHCCeeeCC
Confidence 445554444
No 382
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=81.74 E-value=37 Score=36.20 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDE 63 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~e 63 (455)
.+.+.+...+++.+...+..
T Consensus 259 ~~~~~e~~q~Ld~l~~rL~~ 278 (438)
T PRK00286 259 VPDRAELLQRLQQLQQRLAR 278 (438)
T ss_pred CccHHHHHHHHHHHHHHHHH
Confidence 34556666666666655543
No 383
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=81.57 E-value=57 Score=32.11 Aligned_cols=9 Identities=44% Similarity=0.774 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 012833 50 LKSKIRSLE 58 (455)
Q Consensus 50 lr~kI~~Le 58 (455)
++..|..|+
T Consensus 39 i~e~i~~Le 47 (247)
T PF06705_consen 39 IKEQIQKLE 47 (247)
T ss_pred HHHHHHHHH
Confidence 333333333
No 384
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=81.53 E-value=35 Score=29.69 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq 182 (455)
.+...|+.|...|++-+-+-+..-..|...+..-+..+..++++++.|.=.++.+.+++..++.++.
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888777766665555666655555555555555555555555544444444444433
No 385
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=81.33 E-value=12 Score=35.28 Aligned_cols=14 Identities=57% Similarity=0.793 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 012833 121 LEKQIDNLKKESEK 134 (455)
Q Consensus 121 Le~qIe~LkkeLE~ 134 (455)
++++++++++++++
T Consensus 159 ~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 159 LSEEIEKLKKELEK 172 (192)
T ss_pred hHHHHHHHHHHHHH
Confidence 33334444443333
No 386
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.29 E-value=84 Score=33.92 Aligned_cols=20 Identities=35% Similarity=0.238 Sum_probs=9.2
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHID 62 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ 62 (455)
++.+--+|......|+.+..
T Consensus 248 lkqEnlqLvhR~h~LEEq~r 267 (502)
T KOG0982|consen 248 LKQENLQLVHRYHMLEEQRR 267 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445444444444433
No 387
>PRK04325 hypothetical protein; Provisional
Probab=81.28 E-value=12 Score=30.39 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 147 IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 147 ~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+.++.++.+++.++.-++..++++...+-++...|..++.++..+..+..
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666555555555544433
No 388
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.18 E-value=18 Score=30.77 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 012833 169 EQKSKIRKTERALKV 183 (455)
Q Consensus 169 EqekkI~elE~~Lq~ 183 (455)
+...++..++.++..
T Consensus 78 ~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 78 ELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 389
>PRK14011 prefoldin subunit alpha; Provisional
Probab=80.97 E-value=44 Score=30.72 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 012833 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERI 89 (455)
Q Consensus 57 Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I 89 (455)
+...++.+.++++.+...|..++..+.+...-|
T Consensus 8 ~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~i 40 (144)
T PRK14011 8 QFMALEVYNQQVQKLQEELSSIDMMKMELLKSI 40 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444443333333
No 390
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.44 E-value=77 Score=32.93 Aligned_cols=28 Identities=11% Similarity=0.397 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
++.++...|..++..|++.+....-+..
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~K 103 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIK 103 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3444444444444444444444444433
No 391
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.42 E-value=55 Score=31.23 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 119 DELEKQIDNLKKESEKQQKEKEALEARAIE 148 (455)
Q Consensus 119 ~eLe~qIe~LkkeLE~~~~e~eeLEae~~e 148 (455)
.+++.+|..|+.+++.+......+..+...
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333333333333333
No 392
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.31 E-value=1.1e+02 Score=34.78 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=8.1
Q ss_pred hHHHHHHhhhccc
Q 012833 269 AVKEQWVVFTTNV 281 (455)
Q Consensus 269 ~~~~~w~~~~~~~ 281 (455)
-+.+=||.+.++.
T Consensus 255 ~~~~LWn~l~ts~ 267 (660)
T KOG4302|consen 255 KLLELWNLLDTSD 267 (660)
T ss_pred HHHHHHHhccCCH
Confidence 3455688766665
No 393
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=80.27 E-value=44 Score=35.97 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 133 EKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSK 173 (455)
Q Consensus 133 E~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekk 173 (455)
+.+-.++..++.+-.++...+.+++.+-+.+..+...+++.
T Consensus 193 ~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~e 233 (447)
T KOG2751|consen 193 ERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWRE 233 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334344444444444444444433333
No 394
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=80.24 E-value=33 Score=28.53 Aligned_cols=9 Identities=0% Similarity=0.272 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 012833 151 KKISDLSAK 159 (455)
Q Consensus 151 kkl~Elesk 159 (455)
..+.+....
T Consensus 80 ~~l~~a~~~ 88 (123)
T PF02050_consen 80 EELQEARRE 88 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 395
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.11 E-value=70 Score=32.28 Aligned_cols=10 Identities=40% Similarity=0.178 Sum_probs=3.9
Q ss_pred HHHHHHHhhh
Q 012833 189 MRAKFEATSR 198 (455)
Q Consensus 189 ~kaq~E~~~~ 198 (455)
.+++.|+..+
T Consensus 167 qRLkdEardl 176 (333)
T KOG1853|consen 167 QRLKDEARDL 176 (333)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 396
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.00 E-value=94 Score=33.63 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 354 VVRAYGKFLKSATTYHHQVQASVQEMLKK 382 (455)
Q Consensus 354 v~~~~~~~~~~a~~~h~q~q~~~~~~l~~ 382 (455)
.-.....+.+++.+..+.+++...+.+.+
T Consensus 393 ~Ek~i~k~~e~se~~l~~~~n~~~~~i~~ 421 (438)
T COG4487 393 REKEIEKLIESTENMLGSLLNILGKKIGE 421 (438)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33345556666666666666666655553
No 397
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=80.00 E-value=33 Score=39.62 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcccCccccccc
Q 012833 371 QVQASVQEMLKKHELTSPLATKE 393 (455)
Q Consensus 371 q~q~~~~~~l~~~e~~~~~a~~e 393 (455)
.+...|.++|.+|+..+.|....
T Consensus 735 ~Lr~~v~~~L~~~~~V~~f~~a~ 757 (771)
T TIGR01069 735 KLRKGVQELLKNHPKVKSFRDAP 757 (771)
T ss_pred HHHHHHHHHhcCCcceeeecccC
Confidence 58899999999999998885443
No 398
>COG5283 Phage-related tail protein [Function unknown]
Probab=79.97 E-value=1.3e+02 Score=36.31 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (455)
Q Consensus 54 I~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE 133 (455)
|+.|.+.|..-++.-+..+.+.+...+.+.......+.|.+.++.. +.=+..+.+++.+.+.-.+..++...
T Consensus 24 in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~--------k~~~~~~kqe~~evn~at~a~~kay~ 95 (1213)
T COG5283 24 INVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQ--------KKAYEDLKQEVKEVNRATQASKKAYQ 95 (1213)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555444444444444455555555555555444332 22333445555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 134 KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (455)
Q Consensus 134 ~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~el 177 (455)
....+....|..+..+-.++.-....+.-.++.+..++..+..+
T Consensus 96 e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t 139 (1213)
T COG5283 96 EYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTL 139 (1213)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555544444444444333333333333333333333
No 399
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=79.91 E-value=39 Score=36.17 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 152 kl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ 189 (455)
++.++..-+..|+.++++.+..+..+......++.+|.
T Consensus 352 EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~ 389 (421)
T KOG2685|consen 352 EVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIA 389 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 400
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=79.81 E-value=85 Score=33.06 Aligned_cols=158 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHhhhhccCCCCCCC-ccCccCCCCccHHHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHHHHHHH---------HHH
Q 012833 18 TAADVSIQGEDVPPL-TASDAVDSSPLKIELDQLKSKIRSL-ESHIDEKTQELKGKDEVVAQKEKAIQ---------DKS 86 (455)
Q Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~eL~~lr~kI~~L-eski~ele~eI~~k~~eIk~~e~~I~---------e~e 86 (455)
.+.....-|.+.+.. ..+.......+.+-++.|..+++-| ...++.++..+..+..++..+...-. .+=
T Consensus 218 L~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI 297 (388)
T PF04912_consen 218 LARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKI 297 (388)
T ss_pred HHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHH
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 87 ERIVSLQKELSSLQKKETLNAAE--QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (455)
Q Consensus 87 ~~I~eLq~eI~sLQkK~s~~~~e--ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLe 164 (455)
.+|=++-..++.+..-+-.+-++ .+..++.++...-..+..|+.....+...+..++.-+..++.. ....++.++
T Consensus 298 ~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~ 374 (388)
T PF04912_consen 298 DELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIE 374 (388)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 012833 165 KINDEQKSKIRKTE 178 (455)
Q Consensus 165 k~~eEqekkI~elE 178 (455)
..+..++.+|..|+
T Consensus 375 ~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 375 KNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHhccC
No 401
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.78 E-value=33 Score=34.28 Aligned_cols=43 Identities=12% Similarity=0.298 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 156 leskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
+.++-+.....+.+++.++..+.+.+..++.++..++.....+
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555556666665555544
No 402
>PRK00736 hypothetical protein; Provisional
Probab=79.64 E-value=14 Score=29.65 Aligned_cols=48 Identities=10% Similarity=0.208 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 149 lEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
++.++.+++.++.-++..++++...+-++.+.|..++.++..+..+..
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666655555544443
No 403
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=79.61 E-value=42 Score=29.42 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 012833 89 IVSLQKELSSL 99 (455)
Q Consensus 89 I~eLq~eI~sL 99 (455)
++.++.+|+.+
T Consensus 8 ~~~l~~~i~~l 18 (129)
T cd00584 8 LQVLQQEIEEL 18 (129)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 404
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=79.59 E-value=11 Score=29.73 Aligned_cols=54 Identities=28% Similarity=0.465 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 81 AIQDKSERIVSLQKELSSLQKKETL------NAAEQVDKAHARADELEKQIDNLKKESEK 134 (455)
Q Consensus 81 ~I~e~e~~I~eLq~eI~sLQkK~s~------~~~eei~~Ae~~i~eLe~qIe~LkkeLE~ 134 (455)
.+..+++++..++.+|+.++++++. +-.+-+..-..++.++..++..+...++.
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444332 11223344444555555555555554443
No 405
>PF15294 Leu_zip: Leucine zipper
Probab=79.55 E-value=76 Score=32.35 Aligned_cols=73 Identities=32% Similarity=0.426 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 012833 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQK---------SKIRKTERALKVAEEEMMRA 191 (455)
Q Consensus 121 Le~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqe---------kkI~elE~~Lq~lEeeL~ka 191 (455)
++.+|++|+.+.+.++..+..++.+....-.+-..++..+.+++.....++ ..+.+++..+..++.++.+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 666677777777777777776666666666666666666666666333222 23455555555555555554
Q ss_pred HH
Q 012833 192 KF 193 (455)
Q Consensus 192 q~ 193 (455)
-.
T Consensus 210 ~~ 211 (278)
T PF15294_consen 210 LQ 211 (278)
T ss_pred HH
Confidence 33
No 406
>PRK11020 hypothetical protein; Provisional
Probab=79.51 E-value=15 Score=32.43 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQ 66 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~ 66 (455)
++.||..|+.+++.++.+.....+
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~ 26 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASL 26 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555554433
No 407
>PF15456 Uds1: Up-regulated During Septation
Probab=79.32 E-value=32 Score=30.87 Aligned_cols=19 Identities=37% Similarity=0.660 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDE 63 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~e 63 (455)
.|.++++.++..|...++.
T Consensus 22 eEVe~LKkEl~~L~~R~~~ 40 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEY 40 (124)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455544444444443
No 408
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.32 E-value=97 Score=33.40 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~ 94 (455)
-.++++++.++..++...+..-..=.+++++++..|+++.+.+-.+-.
T Consensus 147 ~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~ 194 (446)
T KOG4438|consen 147 RKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFN 194 (446)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666667777777777776665544433
No 409
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.98 E-value=29 Score=37.77 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~e 176 (455)
.++.+..++..+.+.+..++..++..+.+++.+++.
T Consensus 106 av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 106 AVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455555555555555555555555555543
No 410
>PRK02793 phi X174 lysis protein; Provisional
Probab=78.90 E-value=16 Score=29.51 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 148 elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+++.++.+++.++.-++..++++...+-++...|..++.++..+..+..
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666665555555555544443
No 411
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=78.71 E-value=9.8 Score=41.31 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNLK 129 (455)
Q Consensus 114 Ae~~i~eLe~qIe~Lk 129 (455)
.+.+..+|+++++.++
T Consensus 74 qQ~kasELEKqLaaLr 89 (475)
T PRK13729 74 MQVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 412
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=78.56 E-value=27 Score=32.37 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 114 AHARADELEKQIDNLKKESEKQQKEKEAL 142 (455)
Q Consensus 114 Ae~~i~eLe~qIe~LkkeLE~~~~e~eeL 142 (455)
.+.++..++.++..++.++...+.++..|
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~L 46 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDL 46 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333
No 413
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=78.21 E-value=1.1e+02 Score=33.49 Aligned_cols=132 Identities=9% Similarity=0.137 Sum_probs=62.6
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--
Q 012833 64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKES-EKQQKEKE-- 140 (455)
Q Consensus 64 le~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeL-E~~~~e~e-- 140 (455)
...++....+++.............+.+++..++..+... .++...+++--..|..+-+.|-.++ +.......
T Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~----~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~ 133 (475)
T PRK10361 58 WRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHA----DDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQ 133 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666777777777777666554322 2333333333444555555553322 22222222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Q 012833 141 ---ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (455)
Q Consensus 141 ---eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei 202 (455)
.++.-+.=+..++.....++++........ -..+..+|..+.+.-.++..++..+.+-+
T Consensus 134 ~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~---~~~L~~qi~~L~~~n~~i~~ea~nLt~AL 195 (475)
T PRK10361 134 NRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQE---RHTLAHEIRNLQQLNAQMAQEAINLTRAL 195 (475)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333444444444444444444332222 23344444444444455555555554444
No 414
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=78.04 E-value=11 Score=40.38 Aligned_cols=175 Identities=21% Similarity=0.351 Sum_probs=0.0
Q ss_pred CccCCCCccHHHHHH-------HHHHHHHHHHHHHHHHHhhhchHHHH-HHHHHHHHHHHH-------------------
Q 012833 35 SDAVDSSPLKIELDQ-------LKSKIRSLESHIDEKTQELKGKDEVV-AQKEKAIQDKSE------------------- 87 (455)
Q Consensus 35 ~~~~~~~~l~~eL~~-------lr~kI~~Leski~ele~eI~~k~~eI-k~~e~~I~e~e~------------------- 87 (455)
.+-.+++.+.-.... ...-+..+...+.++.+.|.+....+ ..+.+.......
T Consensus 61 ~dikd~s~l~l~~~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 140 (424)
T PF03915_consen 61 SDIKDGSVLSLNEEPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSS 140 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCeeEEEecccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccccccc
Q ss_pred -----------HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 012833 88 -----------RIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ--KEKEALEARAIEAEKKIS 154 (455)
Q Consensus 88 -----------~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~--~e~eeLEae~~elEkkl~ 154 (455)
+|++|..+|..|- .+.........+-|..+..++..++.---... ....-++.-...+.....
T Consensus 141 ~~~~~~~~~~~Ev~~LRreLavLR----Ql~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd 216 (424)
T PF03915_consen 141 SPQSTSKSDLKEVQSLRRELAVLR----QLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESD 216 (424)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred CcCCCCcchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccccCChH
Q 012833 155 DLSAKLEKLQKINDEQKSKI-----RKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPW 213 (455)
Q Consensus 155 EleskveeLek~~eEqekkI-----~elE~~Lq~lEeeL~kaq~E~~~~a~ei~~~gGawl~Pw 213 (455)
.+..++++|++.++++.+.. .-...+++....++..+..++.....-+...-..|-=-|
T Consensus 217 ~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 217 RLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
No 415
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.03 E-value=36 Score=27.72 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 77 QKEKAIQDKSERIVSLQKELSSLQ 100 (455)
Q Consensus 77 ~~e~~I~e~e~~I~eLq~eI~sLQ 100 (455)
+++..|.+.-..|.=|+=+|+.|.
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELK 31 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555554443
No 416
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=77.92 E-value=1.1e+02 Score=33.11 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q 012833 110 QVDKAHARADELEKQIDNLKKESEKQQ--KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR-----KTERALK 182 (455)
Q Consensus 110 ei~~Ae~~i~eLe~qIe~LkkeLE~~~--~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~-----elE~~Lq 182 (455)
.......-++.+..++...+.---... ....-.+.-...+......+-.++++|++.++.+.+..- -..++++
T Consensus 174 ~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe 253 (426)
T smart00806 174 FFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLE 253 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 444555666666666666655311111 122222333444444555555556666666665554432 1233344
Q ss_pred HHHHHHHHHHHHHhhh
Q 012833 183 VAEEEMMRAKFEATSR 198 (455)
Q Consensus 183 ~lEeeL~kaq~E~~~~ 198 (455)
....+|..+..++...
T Consensus 254 ~v~kdi~~a~keL~~m 269 (426)
T smart00806 254 TVQKELETARKELKKM 269 (426)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 417
>PRK12705 hypothetical protein; Provisional
Probab=77.60 E-value=1.2e+02 Score=33.53 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 82 IQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (455)
Q Consensus 82 I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Eleskve 161 (455)
+............-+.+.+++......+....+++++..++.+.+ +++...+.+....+.++...|..++.-...++
T Consensus 25 ~~~~~~~~~~a~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~e---~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~ 101 (508)
T PRK12705 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQR---QEARREREELQREEERLVQKEEQLDARAEKLD 101 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 162 KLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (455)
Q Consensus 162 eLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a 199 (455)
..+..+++.+..+...+..++.. ......++.+.+
T Consensus 102 ~~~~~l~~~~~~l~~~~~~~~~~---~~~~~~~Le~ia 136 (508)
T PRK12705 102 NLENQLEEREKALSARELELEEL---EKQLDNELYRVA 136 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
No 418
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.53 E-value=1.4e+02 Score=34.18 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012833 364 SATTYHHQVQASVQEMLK 381 (455)
Q Consensus 364 ~a~~~h~q~q~~~~~~l~ 381 (455)
...+-|.++|+.+.++..
T Consensus 556 ~~k~~~e~LqaE~~~lk~ 573 (716)
T KOG4593|consen 556 IKKNRLEELQAELERLKE 573 (716)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355667788887776655
No 419
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=77.47 E-value=51 Score=30.06 Aligned_cols=10 Identities=20% Similarity=0.006 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 012833 123 KQIDNLKKES 132 (455)
Q Consensus 123 ~qIe~LkkeL 132 (455)
++|..|....
T Consensus 47 ~qL~~l~~~a 56 (135)
T TIGR03495 47 NQLIVLLALA 56 (135)
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 420
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=77.31 E-value=50 Score=36.80 Aligned_cols=13 Identities=8% Similarity=0.360 Sum_probs=7.7
Q ss_pred hhhcCcchHHHHH
Q 012833 229 WNAHGKPAMDVAI 241 (455)
Q Consensus 229 w~~~g~P~~~~~~ 241 (455)
|-.-+.|.+....
T Consensus 300 ~y~~~~p~i~~~~ 312 (555)
T TIGR03545 300 YYDQAEPLLNKSK 312 (555)
T ss_pred HHHHHhHhhccch
Confidence 5555666666653
No 421
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.29 E-value=1.6 Score=38.30 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE 95 (455)
Q Consensus 50 lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~e 95 (455)
+..=|+.+...+..+..++.++..++..++..+.+.......++..
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~ 68 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRA 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Confidence 3344444444444444444443333333333333333333333333
No 422
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=77.22 E-value=1.1e+02 Score=35.45 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 012833 50 LKSKIRSLESHID 62 (455)
Q Consensus 50 lr~kI~~Leski~ 62 (455)
+++++.+.+++-.
T Consensus 989 Lr~rL~q~eaeR~ 1001 (1480)
T COG3096 989 LRQRLEQAEAERT 1001 (1480)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 423
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=77.15 E-value=12 Score=40.72 Aligned_cols=12 Identities=17% Similarity=0.063 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 012833 174 IRKTERALKVAE 185 (455)
Q Consensus 174 I~elE~~Lq~lE 185 (455)
|++++.+++.++
T Consensus 106 IkeLEaE~~~Lk 117 (475)
T PRK13729 106 IEKLGQDNAALA 117 (475)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 424
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=77.10 E-value=98 Score=32.27 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~ 195 (455)
.-+..-|.-....+.+++.+.+.+..+|.+.-....+-+..+..+=.|-.....+.+.+.-++..|+.++.-...++.+-
T Consensus 236 ~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~er 315 (391)
T KOG1850|consen 236 TTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTER 315 (391)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444556667888888888888888888888888888888888888888888999999999999988888888777
Q ss_pred hhhhH
Q 012833 196 TSRSK 200 (455)
Q Consensus 196 ~~~a~ 200 (455)
+++..
T Consensus 316 nel~~ 320 (391)
T KOG1850|consen 316 NELNK 320 (391)
T ss_pred ccHHH
Confidence 76543
No 425
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=77.10 E-value=77 Score=35.95 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012833 44 KIELDQLKSKIRSLESHIDEKTQ 66 (455)
Q Consensus 44 ~~eL~~lr~kI~~Leski~ele~ 66 (455)
..++..++.++.++..+.+...+
T Consensus 345 ~q~~~~~~~~l~~~~~~~~~~~~ 367 (656)
T PRK06975 345 NRKVDRLDQELVQRQQANDAQTA 367 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556555555555444333
No 426
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=76.71 E-value=11 Score=31.06 Aligned_cols=25 Identities=12% Similarity=0.345 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhch
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGK 71 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k 71 (455)
|-.++..|..+..+...+++.+++.
T Consensus 6 Ll~Ir~dIk~vd~KVdaLq~~V~~l 30 (75)
T PF05531_consen 6 LLVIRQDIKAVDDKVDALQTQVDDL 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555443
No 427
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=76.68 E-value=58 Score=31.31 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151 (455)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEk 151 (455)
++.|..+....++++.+++..+.++.++...+... .......+++-+++.+....|+++++.++.++..++.--..+-.
T Consensus 73 s~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~-K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~ 151 (203)
T KOG3433|consen 73 SEAICDRKSVLQELESQLATGSQKKATLGESIENR-KAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFE 151 (203)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q ss_pred HHHHHHHHHHH
Q 012833 152 KISDLSAKLEK 162 (455)
Q Consensus 152 kl~Eleskvee 162 (455)
....+++...+
T Consensus 152 k~~~~~K~~~e 162 (203)
T KOG3433|consen 152 KKVHLEKTMAE 162 (203)
T ss_pred HHHHHHHHHHH
No 428
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=76.63 E-value=1.3e+02 Score=33.44 Aligned_cols=40 Identities=15% Similarity=0.319 Sum_probs=20.2
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 012833 347 LKPYTKKVVRAYGKFLKSATTYHHQVQASVQEMLKKHELT 386 (455)
Q Consensus 347 ~~P~~~~v~~~~~~~~~~a~~~h~q~q~~~~~~l~~~e~~ 386 (455)
++|||++-...+..++..+..--+++..-+.+.=..+.|+
T Consensus 300 Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~ 339 (560)
T PF06160_consen 300 AKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLN 339 (560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4455555555555555555555555555554444444443
No 429
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=76.39 E-value=53 Score=28.80 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~e 168 (455)
..+.-+..|...+..+...+..++.........+.+...+...++.-.+
T Consensus 65 ~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~e 113 (141)
T TIGR02473 65 NYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKE 113 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444
No 430
>PRK00846 hypothetical protein; Provisional
Probab=76.34 E-value=30 Score=28.57 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 145 RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 145 e~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
+-..++.++.+++.++.-.+..++++...+-.+...+..+..++..+.....+.
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666666666666666666666666666666666666666655555443
No 431
>PHA03332 membrane glycoprotein; Provisional
Probab=76.29 E-value=1.1e+02 Score=36.69 Aligned_cols=57 Identities=9% Similarity=0.126 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 75 VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ 135 (455)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~ 135 (455)
|+++.+.|...++.|..+++.+..+.+.+.. -...+.++|.+-|.+|+.|+++++..
T Consensus 893 ia~mksaIg~tNaAV~~lsDai~klGnti~k----isatl~~nI~avNgRIs~Led~VN~r 949 (1328)
T PHA03332 893 TAEMASKIGGLNARVDKTSDVITKLGDTIAK----ISATLDNNIRAVNGRVSDLEDQVNLR 949 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHhhHHHhcccHHHHHHHHHHH
Confidence 3334455555555555555555444433322 12356777777777777777666544
No 432
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=76.08 E-value=1.6e+02 Score=34.66 Aligned_cols=10 Identities=30% Similarity=0.282 Sum_probs=4.4
Q ss_pred HHHHHHcCcc
Q 012833 245 LEKKAQAGKW 254 (455)
Q Consensus 245 ~~~~~~~~~w 254 (455)
++....+.+|
T Consensus 652 t~eas~~~kr 661 (913)
T KOG0244|consen 652 TEEASAANKR 661 (913)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 433
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.88 E-value=10 Score=38.27 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEKTQ 66 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele~ 66 (455)
.+.+++.+|.+++.+|+++..
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~ 77 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG 77 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh
Confidence 344455555555555555443
No 434
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=75.85 E-value=79 Score=30.57 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 012833 45 IELDQLKSKIRSLESHIDEKTQEL 68 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI 68 (455)
.-+.....+|..|+.+..++=.+|
T Consensus 32 k~~~~~~k~L~~lE~~~q~lY~~i 55 (204)
T PF10368_consen 32 KPFKEQQKKLNELEKKEQELYEQI 55 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777776666665555
No 435
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=75.50 E-value=84 Score=32.39 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 164 QKINDEQKSKIRKTERALKVAEEEM 188 (455)
Q Consensus 164 ek~~eEqekkI~elE~~Lq~lEeeL 188 (455)
...++.++..++.+..++..+.+++
T Consensus 139 ~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 139 IRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444333
No 436
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.42 E-value=65 Score=37.36 Aligned_cols=22 Identities=45% Similarity=0.348 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEK 162 (455)
Q Consensus 141 eLEae~~elEkkl~Eleskvee 162 (455)
+++....+++...++++.+.+.
T Consensus 538 ~~~~~~~e~~~~~~~l~~~~~~ 559 (782)
T PRK00409 538 EAEALLKEAEKLKEELEEKKEK 559 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 437
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.26 E-value=58 Score=37.69 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=6.9
Q ss_pred HHHHhhhhhhHHHHHH
Q 012833 318 FQEAKKFSKPYIDQVA 333 (455)
Q Consensus 318 ~~e~k~~~~py~~qa~ 333 (455)
+.+|...++-|+|+|.
T Consensus 703 ~~eA~~~l~~~ld~a~ 718 (771)
T TIGR01069 703 SEEALDRLEKFLNDAL 718 (771)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 438
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=75.16 E-value=1.2e+02 Score=32.41 Aligned_cols=16 Identities=0% Similarity=0.105 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 012833 177 TERALKVAEEEMMRAK 192 (455)
Q Consensus 177 lE~~Lq~lEeeL~kaq 192 (455)
+.+.++..+..+.+++
T Consensus 303 i~E~~Es~qtRisklE 318 (395)
T PF10267_consen 303 IWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 439
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=74.87 E-value=25 Score=27.75 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012833 142 LEARAIEAEKKISDLSAKLEKL 163 (455)
Q Consensus 142 LEae~~elEkkl~EleskveeL 163 (455)
.+.++.+.+.+-.++..+++.|
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 440
>PRK01203 prefoldin subunit alpha; Provisional
Probab=74.83 E-value=30 Score=31.32 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elE 150 (455)
..+..++++++.|++-+..+...+.+++...+++-
T Consensus 87 ~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 87 RTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777777766666666655553
No 441
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.54 E-value=40 Score=36.84 Aligned_cols=104 Identities=27% Similarity=0.312 Sum_probs=48.4
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (455)
Q Consensus 65 e~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEa 144 (455)
.+.++-.+++.+.-...|+.....+.+|+ |...+..-+|.+++.+..+|..+|-++=-.++-++..--.|..
T Consensus 340 ~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq--------k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~ 411 (508)
T KOG3091|consen 340 RQRLKVQDQEVKQHRIRINAIGERVTELQ--------KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTP 411 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence 33333334444444444444444444443 2222334466667777777777777665444444333223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 145 RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (455)
Q Consensus 145 e~~elEkkl~EleskveeLek~~eEqekkI~elE~~ 180 (455)
.-+++..++..+...++.= .+++.+++++.+.
T Consensus 412 ~EE~Lr~Kldtll~~ln~P----nq~k~Rl~~L~e~ 443 (508)
T KOG3091|consen 412 DEEELRAKLDTLLAQLNAP----NQLKARLDELYEI 443 (508)
T ss_pred cHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHH
Confidence 3333334443333333222 4555555555543
No 442
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=74.52 E-value=1.4e+02 Score=32.91 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQ 66 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~ 66 (455)
...-+..+..++.+|..++.+++.
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELKE 272 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655544
No 443
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=74.46 E-value=15 Score=35.37 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=42.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 012833 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDE-VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR 117 (455)
Q Consensus 39 ~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~-eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~ 117 (455)
+.+.|+.||.+|..+|...+...+.....-..... --.+.+..+.=++.++.++.+.-..-.....+ ..+.++.++++
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~-v~~Dl~~ie~Q 175 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKS-VREDLDTIEEQ 175 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHH-HHHHHHHHHHH
Confidence 33446666666666666666555552111111111 11233444444555555554200000001111 23445555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012833 118 ADELEKQIDNLKKESEKQ 135 (455)
Q Consensus 118 i~eLe~qIe~LkkeLE~~ 135 (455)
+..|+.-+..-+.+|+.+
T Consensus 176 V~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 176 VDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666665555555555544
No 444
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=74.36 E-value=92 Score=34.89 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 88 RIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (455)
Q Consensus 88 ~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~ 167 (455)
++.+|..+-..|+.+.... ..-..+++++|.++++++.+++.+.+..+.+-...+..---.-.+......+++..--+.
T Consensus 330 kVDeL~~E~~vLrgElea~-kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeR 408 (832)
T KOG2077|consen 330 KVDELTCEKDVLRGELEAV-KQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMER 408 (832)
T ss_pred HHHhhccHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444433332 222346777777777777777766665543322111111111112222333444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 168 DEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 168 eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
..++.++-++++.+.=+| +.++.++..
T Consensus 409 NqYKErLMELqEavrWTE--MiRAsre~p 435 (832)
T KOG2077|consen 409 NQYKERLMELQEAVRWTE--MIRASRENP 435 (832)
T ss_pred hHHHHHHHHHHHHHhHHH--HHHHhhcCc
Confidence 677777778777776665 334444443
No 445
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=74.28 E-value=43 Score=26.77 Aligned_cols=12 Identities=8% Similarity=0.379 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 012833 89 IVSLQKELSSLQ 100 (455)
Q Consensus 89 I~eLq~eI~sLQ 100 (455)
++++.+.|..+.
T Consensus 5 ~~~i~~~l~~~~ 16 (79)
T PF05008_consen 5 TAEIKSKLERIK 16 (79)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHhh
Confidence 334444444443
No 446
>PLN02320 seryl-tRNA synthetase
Probab=73.96 E-value=58 Score=35.88 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~ 103 (455)
+.-++...+.+...+......++ -++|-+++....+...++..+..+...+.+++
T Consensus 69 ~k~ir~n~~~v~~~l~~R~~~~~--vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i 123 (502)
T PLN02320 69 FKWIRDNKEAVAINIRNRNSNAN--LELVLELYENMLALQKEVERLRAERNAVANKM 123 (502)
T ss_pred HHHHHhCHHHHHHHHHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444432221 23455555555555555555555555554433
No 447
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=73.51 E-value=1.6e+02 Score=32.99 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (455)
Q Consensus 108 ~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~ 146 (455)
++..+..++++..|..|++....+++.+.+...++..++
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~ 451 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQL 451 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555544444444444333
No 448
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=73.23 E-value=1.2e+02 Score=31.54 Aligned_cols=180 Identities=9% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 88 RIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (455)
Q Consensus 88 ~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~ 167 (455)
++..++.+|+++.-+.-...++++...+..+-....++..+. |..+++.....+.+....+....-...--.--..-
T Consensus 2 ~~~~~~~q~a~~~lk~~~~~~qk~l~~~~~l~~~~~k~~~~~---e~~~~k~~~~~~~~~~~~~~~~~~~~~~la~~G~g 78 (332)
T TIGR01541 2 QLLLLTQQIADRKLKKLNTADEKSLQSRSDEIIALIKLEKLL---EEAERKALEALKKLAEATASIRAQNKRQLDRFGLG 78 (332)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccccCChHHHHHHHHHHHHHHhhhhhcCcchHHHHHHHHHHH
Q 012833 168 DEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEK 247 (455)
Q Consensus 168 eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei~~~gGawl~Pw~~~~~~~~~~~~~~~w~~~g~P~~~~~~~k~~~~ 247 (455)
+.++.+++++.+.-+.+++++..+.......
T Consensus 79 ~~~~~r~~~~~~i~~~~~~q~~~l~~~~~~~------------------------------------------------- 109 (332)
T TIGR01541 79 DKQRERLDARLQIDRTFRKQQRDLNKAMTAK------------------------------------------------- 109 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-------------------------------------------------
Q ss_pred HHHcCccccchHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhhHHHHHHHHhhhcchhHHHHHhhhchhHHHHhhhhhh
Q 012833 248 KAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKP 327 (455)
Q Consensus 248 ~~~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~e~~k~~~~p~~~~~~~~~~Py~~e~k~~~~p 327 (455)
.++-++.+++--...+-
T Consensus 110 ---------------------------------------------------------------~~~s~~~y~~~~~~l~~ 126 (332)
T TIGR01541 110 ---------------------------------------------------------------GLAGSDLYKEQLAAIKA 126 (332)
T ss_pred ---------------------------------------------------------------cccCHHHHHHHHHHHHH
Q ss_pred HHHHHHhhccchhHhHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 328 YIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKFLKSATTYHHQVQASVQEMLKK 382 (455)
Q Consensus 328 y~~qa~~~~~p~~~~~~~~~~P~~~~v~~~~~~~~~~a~~~h~q~q~~~~~~l~~ 382 (455)
+.++....-.-|.+++...-...+.-+...|..|.++|++++.+++..+...|..
T Consensus 127 ~l~~~l~~~~~~y~~~d~~q~dw~~G~~~a~~~y~d~a~n~a~~~~~~~~~af~g 181 (332)
T TIGR01541 127 ALNEALAELHAYYAAEDALQGDWLAGARSGLADYGETATNVASAAAQLATNAFGG 181 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 449
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=73.22 E-value=96 Score=32.51 Aligned_cols=84 Identities=26% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL-EKLQKINDEQKSKIRKTERALKVAEEEMM 189 (455)
Q Consensus 111 i~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Eleskv-eeLek~~eEqekkI~elE~~Lq~lEeeL~ 189 (455)
++-+-..+..+..++..|.++.+.+..+...+.+++.++-....+.+..+ ..--..+++.+.+|+++++.|..++....
T Consensus 132 ~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 132 FDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccc
Q ss_pred HHHHH
Q 012833 190 RAKFE 194 (455)
Q Consensus 190 kaq~E 194 (455)
..+.+
T Consensus 212 ~~~~~ 216 (342)
T PF06632_consen 212 SPKQE 216 (342)
T ss_dssp HHH--
T ss_pred chhhh
No 450
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=73.09 E-value=64 Score=28.25 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Q 012833 112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKIS------------------------------------- 154 (455)
Q Consensus 112 ~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~------------------------------------- 154 (455)
..+...+..+..+++.++++++.++..+.+++.-++.++.-..
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v 81 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012833 155 --DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (455)
Q Consensus 155 --EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a 199 (455)
.+..-++-++..++.++..+.+++..+..+..++...+.....+.
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~ 128 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ 128 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 451
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=72.92 E-value=1.2e+02 Score=31.95 Aligned_cols=115 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHH
Q 012833 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER-IVSLQKELSSLQKKE--TLNAAEQVDKAHARADELEKQIDN 127 (455)
Q Consensus 51 r~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~-I~eLq~eI~sLQkK~--s~~~~eei~~Ae~~i~eLe~qIe~ 127 (455)
+..+.+.+..+...+..+...+.+++..+..|.+.+.. +...+.+....+.=. .....++++.+...+...+..+..
T Consensus 90 ~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~ 169 (352)
T COG1566 90 RAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAA 169 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (455)
Q Consensus 128 LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~e 168 (455)
-+ +..+..+..++....+.+..+..+...++...-.++
T Consensus 170 a~---~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~ 207 (352)
T COG1566 170 AQ---AAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLE 207 (352)
T ss_pred hH---HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhh
No 452
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=72.80 E-value=1.5e+02 Score=32.39 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~q 124 (455)
.+|..--.+...+-.-|+++...|+++-++--.+--.-.+.++.++.|+.-++..|+....- ..+-..+.-++..+...
T Consensus 348 keLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEs-r~eKetLqlelkK~k~n 426 (527)
T PF15066_consen 348 KELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQES-RNEKETLQLELKKIKAN 426 (527)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012833 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKI----RKTERALKVAEEEMMRAKFEATSRSK 200 (455)
Q Consensus 125 Ie~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI----~elE~~Lq~lEeeL~kaq~E~~~~a~ 200 (455)
--.|+.+--.--.++..--..--++++-+..-+..++.|+....++++.. +-+.++-+..+.+...++.|-....+
T Consensus 427 yv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ek 506 (527)
T PF15066_consen 427 YVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEK 506 (527)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 012833 201 E 201 (455)
Q Consensus 201 e 201 (455)
+
T Consensus 507 e 507 (527)
T PF15066_consen 507 E 507 (527)
T ss_pred h
No 453
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=72.74 E-value=35 Score=26.85 Aligned_cols=52 Identities=37% Similarity=0.547 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKESEKQQKEKEALEAR--------------AIEAEKKISDLSAKLEKLQKINDEQK 171 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~eeLEae--------------~~elEkkl~EleskveeLek~~eEqe 171 (455)
+++.++.+|+++++.++.++..++.+ ...-..++.++...++.++..++.++
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 454
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=72.61 E-value=71 Score=30.56 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 012833 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE-EE 187 (455)
Q Consensus 109 eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lE-ee 187 (455)
+.+-.++++++.++.+++.+=..++.+.+..-.+..+...++..+..+..+++.+=.-++.+.+..+++.+.|+..- -.
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~~~~~~ 158 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQKQIKTQ 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhhh
Q ss_pred HHHHHHHHhhhhHhhhh
Q 012833 188 MMRAKFEATSRSKELTE 204 (455)
Q Consensus 188 L~kaq~E~~~~a~ei~~ 204 (455)
=..++..+-+++.++..
T Consensus 159 ~~~~~~~~~~~~~~~~~ 175 (189)
T TIGR02132 159 GEQLQAQLLEKQEALAA 175 (189)
T ss_pred HHHHHHHHHHHHHHHHH
No 455
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=72.59 E-value=15 Score=28.42 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI 96 (455)
.++++.+++..+++.++.+.+++++..+.+..++..+.+.=....--+++|
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~i 51 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQI 51 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
No 456
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.55 E-value=48 Score=35.56 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH--HHHHHHHHHHHHHHHH
Q 012833 54 IRSLESHIDEKTQELKGK-----DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQ--VDKAHARADELEKQID 126 (455)
Q Consensus 54 I~~Leski~ele~eI~~k-----~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~ee--i~~Ae~~i~eLe~qIe 126 (455)
+.-++...+.+...++.+ =++|-+++....+...++.+|+.+...+++++...+... ...+.+++.++.+++.
T Consensus 4 ~k~ir~n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~ 83 (425)
T PRK05431 4 IKLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIK 83 (425)
T ss_pred HHHHHhCHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 012833 127 NLKKESEKQQKEKEAL 142 (455)
Q Consensus 127 ~LkkeLE~~~~e~eeL 142 (455)
.+++++..++.++..+
T Consensus 84 ~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 84 ALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHH
No 457
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=71.95 E-value=74 Score=28.69 Aligned_cols=80 Identities=23% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISD----------------LSAKLEKLQKINDEQKSKIRKTER 179 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~E----------------leskveeLek~~eEqekkI~elE~ 179 (455)
++-..++.++..++.++...+++++.++.-..+++--=++ ...-.+.|+...+.+.+.|+.++.
T Consensus 23 N~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les 102 (131)
T KOG1760|consen 23 NEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELES 102 (131)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 012833 180 ALKVAEEEMMRAKFEA 195 (455)
Q Consensus 180 ~Lq~lEeeL~kaq~E~ 195 (455)
+...+...+..++.-+
T Consensus 103 ~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 103 ELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHH
No 458
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=71.91 E-value=19 Score=28.79 Aligned_cols=51 Identities=18% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~ 97 (455)
+.+++.++..++.+++..+..++.++......+..|...+..|.++.+...
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=71.90 E-value=1.2e+02 Score=30.85 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAE-----QVDKAHARAD 119 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~e-----ei~~Ae~~i~ 119 (455)
+.|.++-.++.-|-.++.+++......-++....=+.|+..|..++.....-..++.++..++.. ++..++.++.
T Consensus 96 ddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELv 175 (271)
T PF13805_consen 96 DDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELV 175 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKESEKQQKEKE------ALEARAIEAEKKI 153 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~e------eLEae~~elEkkl 153 (455)
.++.+....+.+|.....+.- .+.+-.+-.|+.+
T Consensus 176 raEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~ 215 (271)
T PF13805_consen 176 RAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQA 215 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
No 460
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=71.88 E-value=62 Score=27.55 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE 143 (455)
Q Consensus 64 le~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLE 143 (455)
++.++..-..+.+-+++.=........++.+...++..... ++.....++...-+.|+.++.+...||
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~------------~l~~k~~~l~~~l~~Id~Ie~~V~~LE 79 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLE------------DLNQKYEELQPYLQQIDQIEEQVTELE 79 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012833 144 ARAIEAEKKISDLSAKLEKL 163 (455)
Q Consensus 144 ae~~elEkkl~EleskveeL 163 (455)
+-...++.-..+++.++..+
T Consensus 80 ~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 80 QTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHhhcC
No 461
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=71.38 E-value=17 Score=29.14 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (455)
Q Consensus 54 I~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQk 101 (455)
+..++.++..++..+++.++.+..+|......+..|..+..+|+.+..
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.08 E-value=1.1e+02 Score=30.26 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 91 SLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQ 170 (455)
Q Consensus 91 eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEq 170 (455)
...++|......+.+.-+.......+.+.+.-.++..-+.+.+.+.+.+.+.++++...-+.+.+-+.....+++.+...
T Consensus 19 ~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~ 98 (246)
T KOG4657|consen 19 ICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKAT 98 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012833 171 KSKIRKTERALKVAEEEMMRAKFEATSR 198 (455)
Q Consensus 171 ekkI~elE~~Lq~lEeeL~kaq~E~~~~ 198 (455)
+.+++-+...+|.+++++...++-..++
T Consensus 99 q~elEvl~~n~Q~lkeE~dd~keiIs~k 126 (246)
T KOG4657|consen 99 QSELEVLRRNLQLLKEEKDDSKEIISQK 126 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
No 463
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=71.01 E-value=1.1e+02 Score=30.14 Aligned_cols=142 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 012833 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (455)
Q Consensus 41 ~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~e 120 (455)
+++.+-.+.+......+-..-..+-+.|.+.-.++...-....+.-+.+.+..+.....++..... ...+.+++.+...
T Consensus 56 gt~~~~w~~i~~~~e~~a~~H~~l~~~L~~~~~~l~~~~~~~~k~rK~~k~~~~~~~k~~~~~~~~-~~~l~KaK~~Y~~ 134 (261)
T cd07648 56 GTFAPLWLVLRVSTEKLSELHLQLVQKLQELIKDVQKYGEEQHKKHKKVKEEESGTAEAVQAIQTT-TAALQKAKEAYHA 134 (261)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (455)
Q Consensus 121 Le~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEee 187 (455)
.-.+.++++.... ..++++.++.++.... +++.+.++.++....+........=+.++.+|++
T Consensus 135 ~c~e~e~~~~~~~-s~k~~eK~~~K~~ka~---~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~ 197 (261)
T cd07648 135 RCLELERLRRENA-SPKEIEKAEAKLKKAQ---DEYKALVEKYNNIRADFETKMTDSCKRFQEIEES 197 (261)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=70.89 E-value=17 Score=30.12 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDE---KTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~e---le~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI 96 (455)
+....+.++.+|...++.+.+ +...+++...+|.+++..|+.+..-|..+.+.+
T Consensus 26 ~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 26 LDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 465
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=70.87 E-value=64 Score=30.31 Aligned_cols=75 Identities=25% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 91 SLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQ 170 (455)
Q Consensus 91 eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEq 170 (455)
++++=|.-|| .+.........+..+...|+.++..+..+.+.|+.+...++++...++...+.|-...+..
T Consensus 81 tl~~vI~fLq---------~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 81 TLQDVISFLQ---------NLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred CHHHHHHHHH---------HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 012833 171 KSKI 174 (455)
Q Consensus 171 ekkI 174 (455)
.+..
T Consensus 152 Rkl~ 155 (161)
T TIGR02894 152 RKLA 155 (161)
T ss_pred HHHH
No 466
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.74 E-value=1.3e+02 Score=30.63 Aligned_cols=161 Identities=18% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-------
Q 012833 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQV------- 111 (455)
Q Consensus 39 ~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei------- 111 (455)
++..++..+...+....++.+.+...-.++.+... =.......-..+....+++.-+...++---...+...
T Consensus 52 ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~~~~a~~ 130 (269)
T KOG0811|consen 52 DSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL-ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREKIPMVARG 130 (269)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccc
Q ss_pred -------HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 112 -------DKAHARADELE----------KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (455)
Q Consensus 112 -------~~Ae~~i~eLe----------~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI 174 (455)
+....+...+. ....-...+++.....+++.+.....+|..+.+++.-..+|-..+.++-..+
T Consensus 131 s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~V 210 (269)
T KOG0811|consen 131 SQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELV 210 (269)
T ss_pred cccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012833 175 RKTERALKVAEEEMMRAKFEATSRSK 200 (455)
Q Consensus 175 ~elE~~Lq~lEeeL~kaq~E~~~~a~ 200 (455)
+.++..+..+..-.+....++...+.
T Consensus 211 DsIe~nve~a~~nveqg~~~L~kA~~ 236 (269)
T KOG0811|consen 211 DSIEANVENASVNVEQGTENLRKAAK 236 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=70.65 E-value=83 Score=28.51 Aligned_cols=113 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 012833 91 SLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN-DE 169 (455)
Q Consensus 91 eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~-eE 169 (455)
++..++...+.--..+...+..........+......++.+...+.................+..+....+.+.... ..
T Consensus 2 ~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~ 81 (136)
T PF04871_consen 2 ELKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKE 81 (136)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh
Q 012833 170 QKSKIRKTERALKVAEEEMMRAKFEATSRSKELT 203 (455)
Q Consensus 170 qekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei~ 203 (455)
.+..++.|--=+...+..+.+.+..+..+...++
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eVS 115 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKELGEEVS 115 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCcc
No 468
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=70.63 E-value=1.5e+02 Score=31.32 Aligned_cols=157 Identities=19% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----------------HHHhhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh-----
Q 012833 45 IELDQLKSKIRSLESHIDE----------------KTQELKGKDEVVAQK-EKAIQDKSERIVSLQKELSSLQKK----- 102 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~e----------------le~eI~~k~~eIk~~-e~~I~e~e~~I~eLq~eI~sLQkK----- 102 (455)
..+.++...|..||+-+-- +..-++.+...+.-+ ...+...+..+..|..+++.+.++
T Consensus 209 a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~ 288 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAK 288 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (455)
Q Consensus 103 ~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq 182 (455)
.....+.+|..+-+.+..++.-...|=.-++.+ ..+..+...+.++-..+..+++....++..+...+.-+..++..+.
T Consensus 289 ~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL-~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~ 367 (388)
T PF04912_consen 289 EDAEQESKIDELYEILPRWDPYAPSLPSLVERL-KTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFK 367 (388)
T ss_pred ccccchhHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhHhh
Q 012833 183 VAEEEMMRAKFEATSRSKEL 202 (455)
Q Consensus 183 ~lEeeL~kaq~E~~~~a~ei 202 (455)
.-...+...-..+...-..+
T Consensus 368 ~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 368 ENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHhcc
No 469
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=70.59 E-value=1.4e+02 Score=35.15 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKE 131 (455)
Q Consensus 52 ~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~Lkke 131 (455)
.++..+..+.++++.+|..++...+.....+.+++..-+..+++.-.+......+ +.+...+.+++..... .-.+.
T Consensus 467 ~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~l-e~E~~~l~~el~~~~~---~~~kl 542 (913)
T KOG0244|consen 467 QKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPL-ESERSRLRNELNVFNR---LAAKL 542 (913)
T ss_pred HHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhccc-ccccHHHHHHHHhhhH---HHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 132 SEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 132 LE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
-+.-...+..+|.....+++.+.+-.+.+..-....+...+-.+++..--...-+.+.+...++.
T Consensus 543 ~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~e 607 (913)
T KOG0244|consen 543 GEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAE 607 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
No 470
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=70.34 E-value=55 Score=35.01 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHHHHHHH
Q 012833 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQ---VDKAHARADELEK 123 (455)
Q Consensus 47 L~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~ee---i~~Ae~~i~eLe~ 123 (455)
+.-++...+.....+....-.....-++|-.++..-++...++.+|+.+...+.+++...+... ...+.+++.++.+
T Consensus 4 ik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~ 83 (418)
T TIGR00414 4 RKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKE 83 (418)
T ss_pred HHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 124 QIDNLKKESEKQQKEKEAL 142 (455)
Q Consensus 124 qIe~LkkeLE~~~~e~eeL 142 (455)
++..+++++..++.++..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 84 ELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 471
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.13 E-value=20 Score=35.80 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred Ccchh--hhHHHHHHHHHHHHhhhhccCCCCCCCccCccCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchH----HH
Q 012833 1 MAASK--LVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKD----EV 74 (455)
Q Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~----~e 74 (455)
|.++. +.++..++.++++...+.......-+ .+......-+..++.+++++..+|.+++..+++.+++.. ..
T Consensus 13 ~l~a~v~~~~s~~~~~~l~~~~~a~~~q~~k~~--~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~ 90 (247)
T COG3879 13 MLDAGVFWMLSISLAMLLAGVMLAAVFQTSKGE--SVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTD 90 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012833 75 VAQKEKAIQDKSERIVS 91 (455)
Q Consensus 75 Ik~~e~~I~e~e~~I~e 91 (455)
-+.+++.++.+...+..
T Consensus 91 ~~~ie~~l~~l~~~aG~ 107 (247)
T COG3879 91 DAALEDRLEKLRMLAGS 107 (247)
T ss_pred HHHHHHHHHHHHHHhcc
No 472
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.86 E-value=1.9e+02 Score=32.37 Aligned_cols=119 Identities=10% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 012833 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEAR----- 145 (455)
Q Consensus 71 k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae----- 145 (455)
.+++|..-+..-.+...++.-++.+++.--.+++.. .+++...+++...|.+++++....-|.+.....+|-..
T Consensus 572 rEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~-~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~l 650 (741)
T KOG4460|consen 572 REQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYC-REERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSEL 650 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 146 ------AIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 146 ------~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
--++.+++.-+...++.|..-++....+.++++.-+....+.+.+
T Consensus 651 p~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K 701 (741)
T KOG4460|consen 651 PVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPK 701 (741)
T ss_pred CcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 473
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=69.80 E-value=28 Score=37.42 Aligned_cols=78 Identities=27% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (455)
Q Consensus 113 ~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~ka 191 (455)
.+.+++..++.++..++.+++.++..+..+..... ....-.+....+..+......+..++.+++.++..+++++...
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 474
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=69.68 E-value=1.7e+02 Score=31.73 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh--hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQE--LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~e--I~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~e 120 (455)
...+++....++...+..+.+..++ +=+-..+....-..|..++.++.+++.++..++.-.+.. .-++..++.+|..
T Consensus 247 Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~-sPqV~~l~~rI~a 325 (434)
T PRK15178 247 LENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQ-NPLIPRLSAKIKV 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCchhHHHHHHHH
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 121 LEKQIDNLKKESE------KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (455)
Q Consensus 121 Le~qIe~LkkeLE------~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI 174 (455)
|+.||+..+..+- .....+.+.+.-.-+.+=--+.+..-+..++....+...+.
T Consensus 326 Le~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~ 385 (434)
T PRK15178 326 LEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRER 385 (434)
T ss_pred HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 475
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=69.59 E-value=97 Score=33.61 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (455)
Q Consensus 54 I~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE 133 (455)
+............+++++..++.+..-.-..+...|.+|++ +-.+++.+..-.+.+.++++.+.++|++...
T Consensus 317 ~kka~~~~~~~~~~l~~k~k~~~e~~~~~~~kk~~~eeLES--------IVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~ 388 (446)
T PF07227_consen 317 LKKARLALETCDRELEDKAKEVAELQFERQRKKPQIEELES--------IVRIKQAEAKMFQLKADEARREAEGLQRIAL 388 (446)
T ss_pred hhhhhhhhhhhhhHHHhhhhhhhhhhHHhhhcccchHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 134 KQQKEKE------ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (455)
Q Consensus 134 ~~~~e~e------eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~l 184 (455)
....+.+ -+.-+++++|.+....=.++.-++...-++...-..++.+|+.+
T Consensus 389 aK~~k~EEEYas~~~kl~l~eaee~r~~~~eelk~~e~s~~~~~~mk~rM~~~I~~L 445 (446)
T PF07227_consen 389 AKSEKIEEEYASRYLKLRLNEAEEERKKKFEELKVLENSHRDYDNMKMRMQSEIQDL 445 (446)
T ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhh
No 476
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=69.32 E-value=1.2e+02 Score=29.62 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 012833 75 VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEAR----AIEAE 150 (455)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae----~~elE 150 (455)
+..-+..+......+......+..|+ ....-....-.-....|+..+..+++++..++.+++.++.. ..++-
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLe----Ll~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~ 174 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLE----LLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAG 174 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (455)
Q Consensus 151 kkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E 194 (455)
.++..++.+-.++-..+-+.+..+..++.++..++.+....+..
T Consensus 175 ~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 175 EELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 477
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=69.13 E-value=2.4e+02 Score=33.23 Aligned_cols=140 Identities=8% Similarity=0.105 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-------------
Q 012833 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAE------------- 109 (455)
Q Consensus 43 l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~e------------- 109 (455)
+...+++....+.+..+.+.....++.+..+.+.+.++.+++...-..++.+.++.++...+.....
T Consensus 475 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (910)
T TIGR00833 475 LGDQLDEFSDQLTSRQAYLLQDAEKIAEAIAGLRLVQAGMRLDGENLGQVSLAVRLMQQAISKLQGSAGDVFDIFDPLRR 554 (910)
T ss_pred HhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 110 ----------------------QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (455)
Q Consensus 110 ----------------------ei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~ 167 (455)
+++.......++++..+++..-.....+....+ ..+...+..+...+.++++-.
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 630 (910)
T TIGR00833 555 FVAAIPECRANPVCSVAREIVQAADTVVSSAAKLADAAGQLARGIADVASALSQV----SGLPNALDGIGTQLAQMRESA 630 (910)
T ss_pred HhccCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012833 168 DEQKSKIRKTERALKVAEE 186 (455)
Q Consensus 168 eEqekkI~elE~~Lq~lEe 186 (455)
......+.++...+.....
T Consensus 631 ~~~~~~~~~~~~~~~~~~~ 649 (910)
T TIGR00833 631 AGVQDLLNELSDYSMTMGK 649 (910)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 478
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=69.05 E-value=65 Score=26.67 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhc
Q 012833 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVH 206 (455)
Q Consensus 127 ~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~~~~a~ei~~~g 206 (455)
+|..-++.++.+.+.+-.+.........+++.++...-.+.+..+..+-+++..-....... +.|...+..++..-|
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhC
Q ss_pred c
Q 012833 207 S 207 (455)
Q Consensus 207 G 207 (455)
|
T Consensus 78 ~ 78 (79)
T PF08581_consen 78 R 78 (79)
T ss_dssp T
T ss_pred C
No 479
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=69.00 E-value=22 Score=29.95 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012833 81 AIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN 127 (455)
Q Consensus 81 ~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~ 127 (455)
.+.+++.+++.|+++++.++...... ...+..+.++...+|.+|+.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a-~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKAL-RPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
No 480
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=68.94 E-value=1.1e+02 Score=29.44 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (455)
Q Consensus 116 ~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E~ 195 (455)
.++.+.+-+-..|+.+....+..+..-++++..|...+.-....-............+...++.+-..++..+..++...
T Consensus 98 ~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 98 ARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHhhhhhccccCCh
Q 012833 196 TSRSKELTEVHSAWLPP 212 (455)
Q Consensus 196 ~~~a~ei~~~gGawl~P 212 (455)
..+..+... |.|--|
T Consensus 178 ~~Lq~q~~~--~~~~lp 192 (192)
T PF11180_consen 178 RQLQRQANE--PIPSLP 192 (192)
T ss_pred HHHHHHhcC--CCCCCC
No 481
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=68.63 E-value=1.1e+02 Score=29.00 Aligned_cols=113 Identities=14% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 75 VAQKEKAIQDKSERIVSLQKELSSLQKKETLN-AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKI 153 (455)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~-~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl 153 (455)
+..+.-.|-.....|-.......+.-..+... .++....+.+.++.|..++...+........++..... .+.+-.
T Consensus 68 ~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~---~l~~D~ 144 (184)
T PF05791_consen 68 LDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKD---KLQKDS 144 (184)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 154 SDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (455)
Q Consensus 154 ~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~k 190 (455)
..+......++..+......|..++.+|..+..+|..
T Consensus 145 ~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 145 RNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
No 482
>PF04711 ApoA-II: Apolipoprotein A-II (ApoA-II); InterPro: IPR006801 Apolipoprotein A-II (ApoA-II) is the second major apolipoprotein of high density lipoprotein in human plasma. Mature ApoA-II is present as a dimer of two 77-amino acid chains joined by a disulphide bridge []. ApoA-II regulates many steps in HDL metabolism, and its role in coronary heart disease is unclear []. In bovine serum, the ApoA-II homologue is present in almost free form. Bovine ApoA-II shows antimicrobial activity against Escherichia coli and yeasts in phosphate buffered saline (PBS) [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1L6L_W 2OU1_E.
Probab=68.62 E-value=9.9 Score=31.02 Aligned_cols=62 Identities=26% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHhhhchhHHHHhhhhhhHHHHHH-----hhccchhHhHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Q 012833 310 VQEVVDPYFQEAKKFSKPYIDQVA-----TVAKPHVDNVRVALKPYTKKVVRAYGKFLKSATTYHHQ 371 (455)
Q Consensus 310 ~~~~~~Py~~e~k~~~~py~~qa~-----~~~~p~~~~~~~~~~P~~~~v~~~~~~~~~~a~~~h~q 371 (455)
|+..++-|+++.-+..+--++.|+ +-.+-|+++-++-+.|.|+++.+-+-.|+.+-...|.|
T Consensus 7 lq~lfsqY~qt~TdYgKDL~Ekvk~pElqsQakaYfektqeQltPlvkKagtdl~nflS~~v~~~~q 73 (76)
T PF04711_consen 7 LQSLFSQYFQTVTDYGKDLVEKVKGPELQSQAKAYFEKTQEQLTPLVKKAGTDLMNFLSSFVELKTQ 73 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHSHHTSSTCHHHHHHHHHHHHHHHHGGHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhcccCC
No 483
>PLN02939 transferase, transferring glycosyl groups
Probab=68.61 E-value=2.6e+02 Score=33.44 Aligned_cols=183 Identities=23% Similarity=0.214 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 012833 41 SPLKIELDQLKSKIRSLESHIDEKTQEL---KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR 117 (455)
Q Consensus 41 ~~l~~eL~~lr~kI~~Leski~ele~eI---~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~ 117 (455)
.++-.+++.++.+=--|...|..+..++ .+.++-+-.++++-.-+...+.+|++++...|...+.+..-+.+-.-++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (977)
T PLN02939 222 HSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEK 301 (977)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 118 ADELEKQIDNLKKESEKQ----------QKEKEALEARAIEA----------EKKISDLSAKLEKLQKINDEQKSKIRKT 177 (455)
Q Consensus 118 i~eLe~qIe~LkkeLE~~----------~~e~eeLEae~~el----------Ekkl~EleskveeLek~~eEqekkI~el 177 (455)
+..|+.-++...++.+.. ....+.||+-+.+. +.-.+.++..-+.++....+...+++-.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (977)
T PLN02939 302 VENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLY 381 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhhccccCChHHHHHHHHHHHHH
Q 012833 178 ERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLI 225 (455)
Q Consensus 178 E~~Lq~lEeeL~kaq~E~~~~a~ei~~~gGawl~Pw~~~~~~~~~~~~ 225 (455)
+..++..++.+..+..|....+.+... ..+.|-.-..-+.+.-.++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lll~id~~~ 427 (977)
T PLN02939 382 QESIKEFQDTLSKLKEESKKRSLEHPA--DDMPSEFWSRILLLIDGWL 427 (977)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccCch--hhCCHHHHHHHHHHHHHHH
No 484
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=68.46 E-value=72 Score=36.14 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 012833 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (455)
Q Consensus 45 ~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~q 124 (455)
.+-.++..+|..|+++|..+.++|+....++...|..+.+.-.+|.+.+.+---|+.-.... ........+-...+..+
T Consensus 79 ~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c-~~~~~~l~e~~~rl~~~ 157 (632)
T PF14817_consen 79 RRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQC-EEQRRILREYTKRLQGQ 157 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 012833 125 IDNLKK 130 (455)
Q Consensus 125 Ie~Lkk 130 (455)
++.+++
T Consensus 158 ~~~~q~ 163 (632)
T PF14817_consen 158 VEQLQD 163 (632)
T ss_pred HHHHHH
No 485
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=68.42 E-value=1.4e+02 Score=30.27 Aligned_cols=118 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 012833 76 AQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE---ALEARAIEAEKK 152 (455)
Q Consensus 76 k~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e---eLEae~~elEkk 152 (455)
...+..+.+....+..++.++..++.... ..++..++.++..++.+++..++.++..+.-.. --..+..+.+..
T Consensus 77 ~~~~~~l~~~~a~l~~~~~~l~~~~~~~~---~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~ 153 (331)
T PRK03598 77 APYENALMQAKANVSVAQAQLDLMLAGYR---DEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSS 153 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 012833 153 ISDLSAKLEKLQKINDEQK-----SKIRKTERALKVAEEEMMRAKFEAT 196 (455)
Q Consensus 153 l~EleskveeLek~~eEqe-----kkI~elE~~Lq~lEeeL~kaq~E~~ 196 (455)
+......++..+....... .++...+.++..++..+..++....
T Consensus 154 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~l~ 202 (331)
T PRK03598 154 RDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNLQ 202 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
No 486
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=68.05 E-value=1e+02 Score=28.55 Aligned_cols=127 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 012833 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (455)
Q Consensus 41 ~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~e 120 (455)
+++..-++-.+.+..++..+++...++.++....|..+...-++....+.+.-. +..+.. +...
T Consensus 5 ~~L~~l~dl~~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~------~G~s~~----------q~~n 68 (148)
T COG2882 5 FALQKLLDLAKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLK------SGVSAA----------QWQN 68 (148)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccccHH----------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV 183 (455)
Q Consensus 121 Le~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~ 183 (455)
.+..|+.|...++.....+..+....+.......+-......++.-.+.........+...+.
T Consensus 69 yq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~ek~~~~k~~e~L~er~~~e~~~~e~~~Eq 131 (148)
T COG2882 69 YQQFISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQIELKALEKLKERQKTEFLLEENRREQ 131 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
No 487
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=67.74 E-value=1.8e+02 Score=31.16 Aligned_cols=109 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 012833 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (455)
Q Consensus 42 ~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eL 121 (455)
++-.+|.+++.-...|+...+.++.++..=-.-|.+.=.+-+-.-..+++--+++..|+.
T Consensus 264 aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQ-------------------- 323 (455)
T KOG3850|consen 264 AILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQ-------------------- 323 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------------------
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 122 EKQIDNLKKESEKQQKEKE-ALEARAIEAEKKISDLSAKLEKLQKINDEQK 171 (455)
Q Consensus 122 e~qIe~LkkeLE~~~~e~e-eLEae~~elEkkl~EleskveeLek~~eEqe 171 (455)
++|..|+.++..+.+... .-..+..+++.-++..+..+..|+-....++
T Consensus 324 -nEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~qq 373 (455)
T KOG3850|consen 324 -NEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQQQ 373 (455)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.45 E-value=17 Score=42.49 Aligned_cols=147 Identities=14% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 012833 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (455)
Q Consensus 46 eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qI 125 (455)
....+..+|..+.+....+...-.+......++...+...+......+.+....-..++.. ...+..+..++.-.+.+|
T Consensus 429 ~~~~~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~-~~~~~~~~~~~~~~~~ei 507 (847)
T KOG0998|consen 429 PVLELANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSL-DNDLNLLPLQLSNDNREI 507 (847)
T ss_pred ccccchhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccc-cchhhhcccccccchhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (455)
Q Consensus 126 e~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~ 193 (455)
..+.++++.+.++...++......+.+++.+.+.+..+..+..........++............+..
T Consensus 508 ~~~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~ 575 (847)
T KOG0998|consen 508 SSLEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLK 575 (847)
T ss_pred HHHHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhh
No 489
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=67.45 E-value=30 Score=34.26 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 100 QKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ--QKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (455)
Q Consensus 100 QkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~--~~e~eeLEae~~elEkkl~EleskveeLek~~e 168 (455)
++-...+.+++..+.+.++..++.+.++|.+-+++- -+++-++|.++.+++.+++.++.++..|++.++
T Consensus 123 ~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 123 RNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred eeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 490
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=67.27 E-value=8.7 Score=41.92 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhhhhccCCCCCCCccCccCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 012833 5 KLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKA 81 (455)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~ 81 (455)
|-+++.+|+++++++...+.+..+ +++.++ +|++|++++++++++.++.++.++..|..
T Consensus 2 kk~~~l~l~aall~~s~~~~a~~~-----------------~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 2 KKLISLSLAAALLFLSLPAAAMAD-----------------DIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred chhHHHHHHHHHHHhccchhhhhh-----------------hhHHHH-HHHHHHHHHHHHHHhhcccccccchhhHh
No 491
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=67.15 E-value=1.5e+02 Score=30.27 Aligned_cols=111 Identities=14% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (455)
Q Consensus 61 i~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~e 140 (455)
+...+=-|.-+...+++-++.+.+.+.+|.+|.++|..++ .+=++++...-++|+. |...++++.
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMr----------EDWIEEECHRVEAQLA-----LKEARkEIk 127 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMR----------EDWIEEECHRVEAQLA-----LKEARKEIK 127 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH-----HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (455)
Q Consensus 141 eLEae~~elEkkl~EleskveeLek~~eEqekkI~elE~~Lq~lEe 186 (455)
.|..-.+.+...+.+-.+-++..=..++-|+.+++.+-+..+-++.
T Consensus 128 QLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~ 173 (305)
T PF15290_consen 128 QLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQS 173 (305)
T ss_pred HHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHh
No 492
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=67.12 E-value=1.6e+02 Score=30.29 Aligned_cols=119 Identities=22% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------HHHHHHHHHHHHHHHHHH------
Q 012833 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN-----------AAEQVDKAHARADELEKQ------ 124 (455)
Q Consensus 62 ~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~-----------~~eei~~Ae~~i~eLe~q------ 124 (455)
+...-+|..++.++....+.|..++.+|.+|..++..++++++.- ..+--.++.++..+.+.|
T Consensus 134 ~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgkda~gk~~tR~~~q~k~~ke~~e~dkqNd~~~f 213 (308)
T PF06717_consen 134 QDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGKDANGKQLTRYEVQRKLLKERDEFDKQNDPEKF 213 (308)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHHhhhccChHHH
Q ss_pred -----------------------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 125 -----------------------------------IDNLKKESEKQQKEKE-ALEARAIEAEKKISDLSAKLEKLQKIND 168 (455)
Q Consensus 125 -----------------------------------Ie~LkkeLE~~~~e~e-eLEae~~elEkkl~EleskveeLek~~e 168 (455)
|.+-+.+.-.+.+++. .+.+.-..+++.+..++.++.+|+.+..
T Consensus 214 ~~kY~~eVy~PAl~AC~k~~~~c~~~pIr~kRd~vi~eqkr~~~~q~~~~~ekik~d~~~ldkg~~pL~~k~~el~~q~~ 293 (308)
T PF06717_consen 214 EEKYYKEVYQPALAACQKQSEECYEAPIRAKRDAVINEQKRQYFLQSQEMSEKIKADMATLDKGQYPLNMKVSELNSQQS 293 (308)
T ss_pred HHhcccccccHHHHHhccccccCccchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 012833 169 EQKSKIRKTERA 180 (455)
Q Consensus 169 EqekkI~elE~~ 180 (455)
.+.-+|++++..
T Consensus 294 ~i~~~i~dl~~~ 305 (308)
T PF06717_consen 294 AISMKIRDLNDA 305 (308)
T ss_pred HHHHHHHHHHHH
No 493
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=67.01 E-value=91 Score=27.56 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhccCCCCCCCccCccCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 012833 12 FFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS 91 (455)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~e 91 (455)
|++++++.+.++.+...... ...+...++.+|+--...=+. ..|.-
T Consensus 2 l~~~~~~~~~a~~~~~~~~g------------------C~~K~~~Ie~qI~~Ak~~gN~----------------~rv~G 47 (115)
T PF06476_consen 2 LAALLALSSAAAAAAAALTG------------------CEAKEQAIEKQIEYAKAHGNQ----------------HRVAG 47 (115)
T ss_pred hHHHHHHHHHHHhhccccCc------------------HHHHHHHHHHHHHHHHHcCCH----------------HHHHH
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 92 LQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQK 171 (455)
Q Consensus 92 Lq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqe 171 (455)
|+.-|..++..=+.. ....+.+..++..+.++.+.+.++.+....=+. .+|..-+.++.+.+
T Consensus 48 Le~AL~~v~~~Ctd~----------------~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~ 109 (115)
T PF06476_consen 48 LEKALEEVKAHCTDE----------------GLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAK 109 (115)
T ss_pred HHHHHHHHHhhcCCc----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 012833 172 SKIRK 176 (455)
Q Consensus 172 kkI~e 176 (455)
.++.+
T Consensus 110 ~eL~~ 114 (115)
T PF06476_consen 110 AELKE 114 (115)
T ss_pred HHHhh
No 494
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=66.82 E-value=1.4e+02 Score=32.08 Aligned_cols=150 Identities=13% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhhccCCCCCCCccCccCCCCccHHHHHHHHHHHHHHHHHHHHH-HHhhhchHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 012833 21 DVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEK-TQELKGKDEVVAQKEKAIQDKS--ERIVSLQKELS 97 (455)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~eL~~lr~kI~~Leski~el-e~eI~~k~~eIk~~e~~I~e~e--~~I~eLq~eI~ 97 (455)
|..+.+-+++--++-....+.-+.|...++..+++.++..+... .+.+......+..+...+.-.. ..|.....+++
T Consensus 231 D~ti~D~vAd~ra~TPtaaae~~~p~~~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd 310 (432)
T TIGR00237 231 DFTISDFVADLRAPTPSAAAEIVSPNQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFE 310 (432)
T ss_pred CccHHHHhhhccCCCcHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 98 SLQKKETLNAAEQVDKAHARADELEKQIDNL--KKESEKQQKEKEALEAR-AIEAEKKISDLSAKLEKLQKINDEQ 170 (455)
Q Consensus 98 sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~L--kkeLE~~~~e~eeLEae-~~elEkkl~EleskveeLek~~eEq 170 (455)
.++..+...-...+...+.++..+...++.+ .+.+...+..+..+..+ .......+......++.+...++.+
T Consensus 311 ~L~~RL~~a~~~~L~~k~~rL~~L~~rL~aLSPl~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~l~~~~~~l~~l 386 (432)
T TIGR00237 311 KLEKRKQAALNKQLERTRQKKTRLTKRLTQTNPSPQILRAQTRTEQLNRRLNALKNAQANLKLPQFGTLVGKLNAL 386 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 495
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=66.62 E-value=2.2e+02 Score=31.74 Aligned_cols=159 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred ccCccCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhHHHHH
Q 012833 33 TASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL-SSLQKKETLNAAEQV 111 (455)
Q Consensus 33 ~~~~~~~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~eI-~sLQkK~s~~~~eei 111 (455)
+..+.-....+...|..+..++.+++.++... |++...+....-....+.-.....+..+| +.++.++...-..++
T Consensus 2 ~~~~~l~~edl~~~I~~L~~~i~~~k~eV~~~---I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l 78 (593)
T PF06248_consen 2 ASSGPLSKEDLRKSISRLSRRIEELKEEVHSM---INKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQL 78 (593)
T ss_pred CCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q 012833 112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT-------ERALKVA 184 (455)
Q Consensus 112 ~~Ae~~i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~EleskveeLek~~eEqekkI~el-------E~~Lq~l 184 (455)
..+.+++..+..|+.....-++-++ .+.++...+.+++.-+.+ +.+-..-..+++.+..++.+ -.-+..+
T Consensus 79 ~~a~~e~~~L~~eL~~~~~~l~~L~-~L~~i~~~l~~~~~al~~--~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~L 155 (593)
T PF06248_consen 79 RDAAEELQELKRELEENEQLLEVLE-QLQEIDELLEEVEEALKE--GNYLDAADLLEELKSLLDDLKSSKFEELKILKLL 155 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHH
Q ss_pred HHHHHHHHHHHhh
Q 012833 185 EEEMMRAKFEATS 197 (455)
Q Consensus 185 EeeL~kaq~E~~~ 197 (455)
..++.........
T Consensus 156 k~e~~~lr~~L~~ 168 (593)
T PF06248_consen 156 KDEYSELRENLQY 168 (593)
T ss_pred HHHHHHHHHHHHH
No 496
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=66.59 E-value=31 Score=29.92 Aligned_cols=61 Identities=5% Similarity=0.034 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhhhhccCCCCCCCccCccCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 012833 5 KLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEK 80 (455)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~ 80 (455)
|++++.++++++++...+.+.... .....+++.++.+++.++.+++.+-..+..+|..+.+
T Consensus 2 ~~~~~vll~ll~~l~y~l~~g~~G---------------~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 2 RLLTLLLLALLVWLQYSLWFGKNG---------------ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred cHHHHHHHHHHHHHHHHHhccCCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 497
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=66.50 E-value=58 Score=27.48 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCccCccCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 012833 10 SLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERI 89 (455)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I 89 (455)
.++.+++++.+.+++.... ++++++.++++.|.++++.+.++++.....+..-..+=...++-|
T Consensus 5 lll~aviLs~~LLaGCAs~----------------~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 5 FTVGAVVLATCLLSGCVNE----------------QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred HHHHHHHHHHHHHHHcCCc----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 498
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=66.43 E-value=2.7e+02 Score=32.84 Aligned_cols=150 Identities=22% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhhchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHH
Q 012833 45 IELD-QLKSKIRSLESHIDEKTQELKGKDE----VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAE--QVDKAHAR 117 (455)
Q Consensus 45 ~eL~-~lr~kI~~Leski~ele~eI~~k~~----eIk~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~e--ei~~Ae~~ 117 (455)
.|+. .+++++.--+.+|.++=....-.++ +......+..+....+.++...+.....+.-.+... +....+++
T Consensus 696 ~El~~~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E 775 (984)
T COG4717 696 KELNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEE 775 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEK--KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (455)
Q Consensus 118 i~eLe~qIe~LkkeLE~~~~e~eeLEae~~elEk--kl~EleskveeLek~~eEqekkI~elE~~Lq~lEeeL~kaq~E 194 (455)
...+++.++.+..+++.+..++..++...+.+|. .+.++....+.+...+.+.-+.-..+.-..+.+++.|...+..
T Consensus 776 ~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~ 854 (984)
T COG4717 776 LALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKER 854 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 499
>PRK10780 periplasmic chaperone; Provisional
Probab=66.35 E-value=1.1e+02 Score=28.24 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhhhhccCCCCCCCccCccCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH---------
Q 012833 5 KLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVV--------- 75 (455)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eI--------- 75 (455)
|++.+.+|++++++.+.+..+.-.+-.....--......+.--..+..+....+.++.....++....+.+
T Consensus 3 k~~~~~~l~l~~~~~~~a~a~~KIg~Vd~q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~ 82 (165)
T PRK10780 3 KWLLAAGLGLALATSAGAQAADKIAIVNMGSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKG 82 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCeEEeeHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012833 76 AQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN 127 (455)
Q Consensus 76 k~~e~~I~e~e~~I~eLq~eI~sLQkK~s~~~~eei~~Ae~~i~eLe~qIe~ 127 (455)
.+....-.+....-++++.....++.....-..+....+-.++.+.=+.+..
T Consensus 83 ~~~~~~~~el~~~~~~~q~~~~~~qq~~~~~~~e~~~~i~~ki~~ai~~vak 134 (165)
T PRK10780 83 SDRTKLEKDVMAQRQTFSQKAQAFEQDRRRRSNEERNKILTRIQTAVKSVAN 134 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.34 E-value=2.1e+02 Score=32.23 Aligned_cols=110 Identities=16% Similarity=0.275 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 012833 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV-SLQKELSSLQKKETLNAAEQVDKAHARAD 119 (455)
Q Consensus 41 ~~l~~eL~~lr~kI~~Leski~ele~eI~~k~~eIk~~e~~I~e~e~~I~-eLq~eI~sLQkK~s~~~~eei~~Ae~~i~ 119 (455)
++.+.+++.++.=+......+-+.+..|.+...+.++ .+..++..|. +.-+.++... ..--+++.++
T Consensus 388 d~t~d~id~i~~l~k~~na~V~~~N~ri~nf~k~~~~---sk~~le~~~v~~~~~~VQe~~---------~Y~g~ekk~n 455 (758)
T COG4694 388 DSTKDEIDAIKDLIKKANAQVVNHNERIKNFEKQKKS---SKEQLEKFLVNEFKSDVQEYN---------KYCGLEKKIN 455 (758)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012833 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (455)
Q Consensus 120 eLe~qIe~LkkeLE~~~~e~eeLEae~~elEkkl~Eleskvee 162 (455)
.|+.++...+++++.+.++..++|+-+....--++++++-+..
T Consensus 456 ~LE~e~kn~~~ev~kls~ei~~ie~~l~~~~~~vke~nq~l~~ 498 (758)
T COG4694 456 NLEKEIKNNQEEVKKLSNEIKEIEKFLVSIKPIVKEINQTLLK 498 (758)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Done!